title: 3964_Treg_Lung_94_S94_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_46_S238_P1

status: Public on Dec 03 2019

type: SRA

city: Cambridge

first: Rebecca

middle: H

last: Herbst

state: MA

address: 415 Main Street

department: Klarman Cell Observatory

country: USA

institute: Broad Institute of MIT and Harvard

description: Full-length RNAseq (SMART-Seq2) reads

library_source: transcriptomic

data_processing:
Full-length RNAseq (SMART-Seq2)
Tophat
Bowtie mapping to UCSC mm10 mouse transcriptome with parameters `-n 0 -m 10`
RSEM v1.2.8
Supplementary_files_format_and_content: Transcripts per million (TPM) expression values (derived from RSEM  for each gene (rows) in each cell (columns)

molecule: total RNA

organism: Mus musculus

source_name: mouse tissue

extract_protocol:
Dissociated individual cells from lung. Isolated Treg and Tconv cells by FACS based on CD4, Thy1.2, FoxP3, GFP staining.
Full length RNAseq (SMART-Seq2)

tag: mouse-id

tag: tissue

value: Lung

tag: cell-id-assigned

value: Tconv

tag: cell-id-sorted


title: 3964_CD4_Lung_45_S237_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_11_S203_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_86_S86_P1

description: Full-length RNAseq (SMART-Seq2) reads

value: Treg


title: 3964_CD4_Lung_12_S204_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_21_S213_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_35_S35_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_39_S39_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_96_S288_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_50_S50_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_85_S85_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_87_S87_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_43_S235_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_90_S90_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_55_S55_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_51_S243_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_20_S20_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_81_S81_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_42_S234_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_10_S10_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_17_S17_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_16_S208_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_57_S249_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_59_S59_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_46_S46_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_11_S11_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_91_S91_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_52_S244_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_52_S52_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_10_S202_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_63_S63_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_78_S270_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_82_S274_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_74_S266_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_65_S257_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_12_S12_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_4_S196_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_60_S60_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_36_S228_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_49_S241_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_64_S256_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_40_S232_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_68_S68_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_Treg_Lung_6_S6_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3964_CD4_Lung_63_S255_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_22_S118_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_55_S151_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_62_S158_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_30_S126_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_14_S110_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_80_S176_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_26_S122_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_27_S123_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_6_S102_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_36_S132_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_70_S166_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_76_S172_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_84_S180_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_77_S173_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_24_S120_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_40_S136_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_11_S107_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_38_S134_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_4_S100_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_68_S164_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_20_S116_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_10_S106_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_51_S147_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_60_S156_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_45_S141_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_67_S163_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_31_S127_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_37_S133_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_3_S99_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_47_S143_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_96_S192_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_81_S177_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_9_S105_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_12_S108_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_41_S137_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_33_S129_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_64_S160_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_29_S125_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_56_S152_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_42_S42_P1

description: Full-length RNAseq (SMART-Seq2) reads

value: LN


title: 3839_Treg_Lung_67_S355_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_16_S16_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_50_S50_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_80_S368_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_32_S32_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_28_S316_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_14_S302_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_62_S62_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_52_S52_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_48_S48_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_77_S365_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_Lung_52_S148_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_12_S12_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_46_S334_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_7_S7_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_56_S56_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_64_S352_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_38_S326_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_16_S304_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_17_S305_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_85_S85_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_76_S76_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_92_S92_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_84_S84_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_72_S72_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_48_S336_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_73_S73_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_6_S294_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_58_S346_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_59_S347_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_39_S39_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_86_S374_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_8_S8_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_74_S362_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_26_S314_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_36_S324_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_71_S71_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_37_S37_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_92_S380_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_15_S15_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_51_S339_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_94_S382_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_85_S373_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_37_S325_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_8_S296_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_41_S329_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_52_S340_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_34_S322_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_4_S4_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_49_S49_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_78_S366_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_10_S10_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_55_S343_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_20_S20_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_30_S318_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_53_S341_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_53_S53_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_38_S38_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_77_S77_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_64_S64_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_9_S297_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_31_S31_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_54_S54_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_83_S83_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_40_S328_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_18_S306_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_91_S91_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_21_S21_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_11_S299_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_9_S9_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_43_S43_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_3_S291_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_69_S69_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_89_S89_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_42_S330_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_25_S25_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_81_S369_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_87_S87_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_65_S353_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_32_S320_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_93_S93_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_75_S363_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_44_S44_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_67_S67_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_51_S51_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_78_S78_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_66_S354_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_55_S55_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_68_S68_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_75_S75_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_5_S5_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_88_S376_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_27_S315_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_71_S359_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_34_S34_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_95_S95_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_29_S317_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_30_S30_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_57_S345_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_65_S65_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_39_S327_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_45_S333_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_86_S86_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_89_S377_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_15_S303_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_62_S350_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_19_S19_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_90_S90_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_40_S40_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_5_S293_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_94_S94_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_80_S80_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_35_S323_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_27_S27_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_28_S28_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_81_S81_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_3_S3_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_11_S11_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_70_S70_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_73_S361_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_84_S372_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_61_S349_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_68_S356_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_24_S312_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_82_S82_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_21_S309_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_22_S310_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_58_S58_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_17_S17_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_6_S6_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_46_S46_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_19_S307_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_60_S60_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_25_S313_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_10_S298_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_90_S378_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_49_S337_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_96_S96_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_47_S47_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_33_S33_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_95_S383_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_4_S292_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_96_S384_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_45_S45_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_57_S57_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_12_S300_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_23_S23_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_91_S379_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_Lung_50_S338_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_7_S103_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_58_S346_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_19_S307_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_60_S348_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_6_S294_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_75_S363_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_46_S334_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_11_S107_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_11_S299_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_7_S295_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_25_S121_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_78_S174_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_91_S379_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_90_S378_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_CD4_LN_41_S41_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_17_S113_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_88_S376_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_22_S118_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_70_S166_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_24_S312_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_68_S164_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_40_S136_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_87_S375_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_35_S323_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_55_S343_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_47_S143_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_23_S311_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_38_S326_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_86_S374_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_33_S129_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_91_S187_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_84_S180_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_39_S327_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_56_S344_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_43_S331_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_53_S149_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_12_S108_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_49_S337_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_65_S161_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_57_S345_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_8_S296_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_51_S147_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_41_S137_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_20_S308_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_18_S306_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_73_S361_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_60_S156_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_43_S139_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_69_S165_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_84_S372_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_71_S167_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_48_S144_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_94_S190_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_74_S362_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_61_S157_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_30_S318_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_14_S110_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_87_S183_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_69_S357_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_26_S122_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_6_S102_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_63_S351_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_10_S106_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_94_S382_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_46_S142_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_80_S176_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_23_S119_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_56_S152_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_76_S172_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_39_S135_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_53_S341_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_20_S116_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_36_S132_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_79_S367_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_17_S305_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_92_S380_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_41_S329_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_73_S169_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_15_S303_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_68_S356_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_54_S342_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_74_S170_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_37_S133_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_67_S355_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_59_S347_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_85_S181_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_76_S364_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_82_S178_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_63_S159_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_64_S352_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_95_S191_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_29_S317_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_5_S101_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_77_S365_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_22_S310_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_8_S104_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_81_S177_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_77_S173_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_54_S150_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_29_S125_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_28_S124_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_89_S377_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_26_S314_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_83_S179_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_89_S185_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_9_S105_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_93_S189_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_21_S117_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_36_S324_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_49_S145_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_45_S141_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_79_S175_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_24_S120_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_28_S316_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_34_S322_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_45_S333_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_47_S335_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_67_S163_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_33_S321_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_72_S360_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_92_S188_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_15_S111_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_13_S301_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_9_S297_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_55_S151_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_27_S123_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_44_S332_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_16_S304_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_44_S140_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_62_S350_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_32_S320_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_96_S192_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_34_S130_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_82_S370_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_72_S168_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_57_S153_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_18_S114_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_50_S338_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_37_S325_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_64_S160_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_52_S340_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_31_S319_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_3_S291_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_65_S353_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_42_S330_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_58_S154_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_80_S368_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_31_S127_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_32_S128_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_51_S339_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_4_S292_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3839_Treg_LN_59_S155_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_81_S369_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_71_S359_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_21_S309_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_71_S167_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_81_S177_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_94_S190_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_12_S300_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_76_S172_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_85_S181_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_33_S321_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_29_S125_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_57_S153_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_82_S178_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_28_S124_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_LN_48_S336_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_27_S123_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_34_S130_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_30_S318_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_37_S325_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_69_S357_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_9_S105_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_59_S155_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_11_S299_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_29_S317_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_66_S354_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_17_S113_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_41_S329_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_35_S131_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_25_S313_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_3_S291_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_10_S106_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_87_S183_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_16_S112_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_75_S171_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_6_S294_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_26_S122_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_89_S377_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_86_S182_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_24_S120_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_27_S315_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_32_S128_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_44_S332_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_49_S337_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_56_S344_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_8_S296_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_54_S150_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_42_S330_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_62_S158_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_51_S339_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_85_S373_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_15_S111_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_68_S164_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_47_S335_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_64_S352_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_55_S343_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_47_S143_P1

description: Full-length RNAseq (SMART-Seq2) reads

value: Ambiguous


title: 3642_CD4_LN_22_S310_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_46_S334_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_22_S118_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_34_S322_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_20_S308_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_96_S384_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_32_S320_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_79_S175_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_77_S173_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_60_S156_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_35_S323_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_78_S174_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_80_S368_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_67_S163_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_79_S367_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_62_S350_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_77_S365_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_64_S160_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_43_S331_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_91_S187_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_54_S342_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_61_S157_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_41_S137_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_10_S298_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_83_S179_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_88_S184_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_28_S316_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_84_S180_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_58_S154_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_53_S341_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_37_S133_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_63_S159_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_57_S345_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_19_S115_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_38_S326_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_6_S102_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_69_S165_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_82_S370_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_11_S107_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_14_S302_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_70_S358_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_73_S169_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_23_S311_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_8_S104_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_94_S382_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_93_S189_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_36_S324_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_43_S139_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_75_S363_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_51_S147_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_17_S305_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_4_S292_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_44_S140_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_72_S168_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_7_S295_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_76_S364_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_52_S148_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_83_S371_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_58_S346_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_96_S192_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_68_S356_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_74_S170_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_39_S327_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_42_S138_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_12_S108_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_36_S132_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_16_S304_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_93_S381_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_95_S383_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_55_S151_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_45_S333_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_21_S309_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_90_S378_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_61_S349_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_4_S100_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_7_S103_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_25_S121_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_72_S360_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_38_S134_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_46_S142_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_86_S374_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_21_S117_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_24_S312_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_56_S152_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_65_S161_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_65_S353_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_87_S375_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_49_S145_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_13_S109_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_5_S293_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_50_S146_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_59_S347_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_40_S328_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_26_S314_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_40_S136_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_71_S359_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_60_S348_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_48_S336_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_67_S355_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_LN_74_S362_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_88_S88_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_18_S306_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_90_S186_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_84_S84_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_22_S22_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_23_S23_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_76_S76_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_81_S369_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_4_S4_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_10_S10_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_11_S299_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_LN_5_S101_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_87_S87_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_26_S314_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_20_S308_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_70_S70_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_33_S33_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_7_S295_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_10_S298_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_44_S44_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_43_S331_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_35_S323_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_77_S77_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_62_S350_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_34_S34_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_53_S53_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_38_S38_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_20_S20_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_44_S332_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_5_S293_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_40_S40_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_11_S11_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_51_S339_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_45_S333_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_6_S294_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_30_S30_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_55_S343_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_49_S337_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_42_S330_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_26_S26_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_90_S90_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_14_S14_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_74_S362_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_59_S59_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_8_S296_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_68_S68_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_57_S345_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_17_S305_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_78_S78_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_71_S71_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_30_S318_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_74_S74_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_47_S47_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_9_S297_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_80_S80_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_18_S18_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_48_S48_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_46_S46_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_5_S5_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_57_S57_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_32_S32_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_92_S380_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_3_S291_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_63_S63_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_21_S21_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_35_S35_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_41_S41_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_72_S72_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_85_S85_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_77_S365_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_34_S322_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_39_S39_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_65_S65_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_22_S310_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_56_S344_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_24_S312_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_58_S58_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_80_S368_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_93_S381_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_19_S19_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_29_S317_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_64_S64_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_92_S92_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_42_S42_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_29_S29_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, 4-chloromercuribenzoic acid for 6 days, Tanja_Waldmann_8.1

type: RNA

city: Konstanz

first: Marcel

last: Leist

address: Universitätsstraße 10

country: Germany

institute: University of Konstanz

hyb_protocol: 12.5µg of fragmented aRNA was hybridized to the Human Genome U133 plus 2.0 microarrays in the Genechip Hybridisation Oven-645 (Affymetrix, United Kingdom) for 16 h at 45º C.

scan_protocol: Arrays were washed and stained with phycoerythrin with Fluidics Station 450 and scanned using the Gene-Chip Scanner 3000 7G (Affymetrix, United Kingdom) according to the manufacturer's instructions

data_processing: The quality control (QC) matrices were confirmed with expression console software (Affymertix, USA) and Partek genomics suite version 6.6 (Partek Inc.St.Louis,USA). QC passed CEL files were further analyzed using Partek genomics suite version 6.6. All CEL files were RMA background corrected, quantile normalized and all probe sets were summarized using median polish algorithm.

label: biotin

organism: Homo sapiens

source_name: hESCs have been treated with 4-chloromercuribenzoic acid for 6 days

label_protocol: 100ng total RNA was used for aRNA amplification with GeneChip® 3’ IVT Express Kit (Affymetrix, United Kingdom) according to the manufacturer’s instructions. After 16 h of biotinylated in vitro transcription, aRNA was purified using magnetic beads and 15µg of purified aRNA was fragmented with fragmentation buffer

growth_protocol: According to Krug AK et al. (2013) Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach. Arch Toxicol 87(1):123-43).

extract_protocol: Total RNA from 6 days differentiated hESCs in the presence and absence of benchmark concentration (BMC) of toxicants has  been isolated with  Trizol reagent (Invitrogen) and purified with the RNeasy Plus kit from Qiagen

treatment_protocol: H9 hESCs were differentiated for 6 days in the presence and absence of the toxicants into neuroepithelia progenitors (NEP)  (Krug AK et al. (2013) Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach. Arch Toxicol 87(1):123-43).

tag: gender

value: female

tag: cell status

value: differentiated state

tag: cell type

value: hESCs

tag: incubated or treated with

value: 4-chloromercuribenzoic acid for 6 days


title: hESCs, 4-chloromercuribenzoic acid for 6 days, Tanja_Waldmann_8.4


title: hESCs,  entinostat for 6 days, Tanja_Waldmann_5.4

source_name: hESCs have been treated with  entinostat for 6 days

value: entinostat for 6 days


title: hESCs,  entinostat for 6 days, Tanja_Waldmann_5.3


title: hESCs,  entinostat for 6 days, Tanja_Waldmann_5.1


title: 3889_CD4_LN_33_S321_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, phenylmercuric acetate for 6 days, Tanja_Waldmann_7.4

source_name: hESCs have been treated with phenylmercuric acetate for 6 days

value: phenylmercuric acetate for 6 days


title: hESCs, 4-chloromercuribenzoic acid for 6 days, Tanja_Waldmann_8.2


title: hESCs, phenylmercuric acetate for 6 days, Tanja_Waldmann_7.2


title: hESCs, 4-chloromercuribenzoic acid for 6 days, Tanja_Waldmann_8.3


title: hESCs, phenylmercuric acetate for 6 days, Tanja_Waldmann_7.3


title: hESCs,  HgBr2 for 6 days, Tanja_Waldmann_4.3

source_name: hESCs have been treated with  HgBr2 for 6 days

value: HgBr2 for 6 days


title: hESCs,  HgBr2 for 6 days, Tanja_Waldmann_4.4


title: hESCs, phenylmercuric acetate for 6 days, Tanja_Waldmann_7.1


title: 3889_Treg_LN_36_S36_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_69_S69_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_60_S348_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_70_S358_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_55_S55_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs,  HgBr2 for 6 days, Tanja_Waldmann_4.1


title: hESCs,  panobinostat for 6 days, Tanja_Waldmann_3.2

source_name: hESCs have been treated with  panobinostat for 6 days

value: panobinostat for 6 days


title: hESCs,  panobinostat for 6 days, Tanja_Waldmann_3.4


title: hESCs,  panobinostat for 6 days, Tanja_Waldmann_3.1


title: hESCs,  entinostat for 6 days, Tanja_Waldmann_5.2


title: hESCs,  panobinostat for 6 days, Tanja_Waldmann_3.3


title: hESCs,  HgBr2 for 6 days, Tanja_Waldmann_4.2


title: 3889_CD4_LN_65_S353_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_38_S326_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_6_S6_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_58_S346_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_54_S54_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs,  belinostat for 6 days, Tanja_Waldmann_1.4

source_name: hESCs have been treated with  belinostat for 6 days

value: belinostat for 6 days


title: hESCs,  belinostat for 6 days, Tanja_Waldmann_1.3


title: hESCs,  belinostat for 6 days, Tanja_Waldmann_1.2


title: 3889_Treg_LN_86_S86_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_52_S52_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_54_S342_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs,  belinostat for 6 days, Tanja_Waldmann_1.1


title: hESCs, culturing medium for 6 days, Tanja_Waldmann_6.3

source_name: hESCs have been incubated with culturing medium for 6 days

value: culturing medium for 6 days


title: hESCs, culturing medium for 6 days, Tanja_Waldmann_6.1


title: 3889_CD4_LN_87_S375_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_64_S352_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, culturing medium for 6 days, Tanja_Waldmann_6.2


title: hESCs, culturing medium for 6 days, Tanja_Waldmann_2.4


title: 3889_CD4_LN_53_S341_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_73_S73_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, culturing medium for 6 days, Tanja_Waldmann_2.3


title: hESCs, culturing medium for 6 days, Tanja_Waldmann_2.2


title: hESCs,  HgCl2 for 6 days, D12_19

source_name: hESCs have been treated with  HgCl2 for 6 days

value: HgCl2 for 6 days


title: 3889_CD4_LN_52_S340_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, culturing medium for 6 days, Tanja_Waldmann_2.1


title: hESCs,  HgCl2 for 6 days, D12_20


title: hESCs,  HgCl2 for 6 days, D12_21


title: hESCs,  thimerosal for 6 days, D12_20

source_name: hESCs have been treated with  thimerosal for 6 days

value: thimerosal for 6 days


title: 3889_CD4_LN_84_S372_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_83_S83_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, culturing medium for 6 days, Tanja_Waldmann_6.4


title: hESCs, culturing medium for 6 days, D12_21


title: 3889_CD4_LN_91_S379_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs,  thimerosal for 6 days, D12_18


title: hESCs, suberanilohydroxamic acid for 6 days, D12_21

source_name: hESCs have been treated with suberanilohydroxamic acid for 6 days

value: suberanilohydroxamic acid for 6 days


title: 3889_CD4_LN_12_S300_P1

description: Full-length RNAseq (SMART-Seq2) reads

value: Tconv


title: hESCs, culturing medium for 6 days, D12_18


title: 3889_Treg_LN_8_S8_P1

description: Full-length RNAseq (SMART-Seq2) reads

value: Treg


title: 3889_CD4_LN_31_S319_P1

description: Full-length RNAseq (SMART-Seq2) reads

value: LN


title: hESCs,  HgCl2 for 6 days, D12_18


title: hESCs, culturing medium for 6 days, D12_20


title: 3889_Treg_LN_66_S66_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs,  thimerosal for 6 days, D12_21


title: 3889_CD4_LN_68_S356_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_46_S334_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_17_S17_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_13_S301_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_CD4_LN_39_S327_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs,  thimerosal for 6 days, D12_19


title: 3889_CD4_LN_36_S324_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, suberanilohydroxamic acid for 6 days, D12_20


title: 3889_Treg_LN_60_S60_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, suberanilohydroxamic acid for 6 days, D12_19


title: hESCs, culturing medium for 6 days, D12_19


title: 338_CD4_Lung_26_S122_P1

description: Full-length RNAseq (SMART-Seq2) reads

value: Lung


title: 338_CD4_Lung_32_S128_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, DMSO (suberanilohydroxamic acid solvent) as a vehicle for 6 days, D12_20

source_name: hESCs have been incubated with DMSO (suberanilohydroxamic acid solvent) as a vehicle for 6 days

value: female


title: 3889_CD4_LN_63_S351_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_53_S149_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_48_S144_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_54_S150_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_42_S138_P1

description: Full-length RNAseq (SMART-Seq2) reads

value: Ambiguous


title: 338_CD4_Lung_7_S103_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_81_S81_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, valproic acid for 6 days, D12_10

source_name: hESCs have been treated with valproic acid for 6 days

value: differentiated state

value: hESCs

value: valproic acid for 6 days


title: 338_CD4_Lung_85_S181_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, suberanilohydroxamic acid for 6 days, D12_18


title: hESCs, valproic acid for 6 days, D12_08


title: 3889_Treg_LN_37_S37_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_84_S180_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_12_S108_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, culturing medium for 6 days, D12_10


title: hESCs, valproic acid for 6 days, D12_09


title: hESCs, DMSO (suberanilohydroxamic acid solvent) as a vehicle for 6 days, D12_21


title: 338_CD4_Lung_94_S190_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_55_S151_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3889_Treg_LN_9_S9_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, culturing medium for 6 days, D12_07


title: hESCs, culturing medium for 6 days, D12_08


title: hESCs, DMSO (suberanilohydroxamic acid solvent) as a vehicle for 6 days, D12_19


title: 338_CD4_Lung_4_S100_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, DMSO (suberanilohydroxamic acid solvent) as a vehicle for 6 days, D12_18


title: 3889_CD4_LN_37_S325_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, culturing medium for 6 days, D11_21


title: hESCs, valproic acid for 6 days, D12_07


title: 338_CD4_Lung_65_S161_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, culturing medium for 6 days, D12_09


title: hESCs, culturing medium for 6 days, D11_25


title: 338_CD4_Lung_80_S176_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_30_S126_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_66_S162_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, culturing medium for 6 days, D11_24


title: 338_CD4_Lung_73_S169_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_9_S105_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_63_S159_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_21_S117_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_89_S185_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_79_S175_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_27_S123_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, culturing medium for 6 days, D11_23


title: hESCs, trichostatin-A  for 6 days, D11_23

source_name: hESCs have been treated with trichostatin-A  for 6 days

value: trichostatin-A  for 6 days


title: hESCs, trichostatin-A  for 6 days, D11_22


title: 338_CD4_Lung_15_S111_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, trichostatin-A  for 6 days, D11_21


title: hESCs, DMSO (trichostatin-A solvent) as a vehicle for 6 days, D11_25

source_name: hESCs have been incubated with DMSO (trichostatin-A solvent) as a vehicle for 6 days


title: hESCs, DMSO (trichostatin-A solvent) as a vehicle for 6 days, D11_23


title: hESCs, trichostatin-A  for 6 days, D11_25


title: 338_CD4_Lung_47_S143_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_72_S168_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, DMSO (trichostatin-A solvent) as a vehicle for 6 days, D11_24


title: hESCs, culturing medium for 6 days, D11_22


title: hESCs, trichostatin-A  for 6 days, D11_24


title: hESCs, DMSO (trichostatin-A solvent) as a vehicle for 6 days, D11_22


title: hESCs, DMSO (trichostatin-A solvent) as a vehicle for 6 days, D11_21


title: hESCs, MeHg  for 6 days, D11_22

source_name: hESCs have been treated with MeHg  for 6 days

value: MeHg  for 6 days


title: 338_CD4_Lung_57_S153_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, MeHg  for 6 days, D11_25


title: hESCs, MeHg  for 6 days, D11_21


title: 338_CD4_Lung_17_S113_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_74_S170_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_35_S131_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_51_S147_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, MeHg  for 6 days, D11_23


title: 338_CD4_Lung_19_S115_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_6_S102_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_28_S124_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_41_S137_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_29_S125_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_61_S157_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_46_S142_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, ethanol (MeHg solvent) as a vehicle for 6 days, D11_25

source_name: hESCs have been treated with ethanol (MeHg solvent) as a vehicle for 6 days


title: 338_CD4_Lung_24_S120_P1

description: Full-length RNAseq (SMART-Seq2) reads

source_name: mouse tissue


title: hESCs, MeHg  for 6 days, D11_24


title: 338_CD4_Lung_76_S172_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_60_S156_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_62_S158_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, ethanol (MeHg solvent) as a vehicle for 6 days, D11_24


title: hESCs, ethanol (MeHg solvent) as a vehicle for 6 days, D11_22


title: hESCs, ethanol (MeHg solvent) as a vehicle for 6 days, D11_21


title: 338_CD4_Lung_13_S109_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, ethanol (MeHg solvent) as a vehicle for 6 days, D11_23


title: hESCs, Interferon beta (0.0000000005 M) for 6 days, Exp5

source_name: hESCs have been treated with Interferon beta (0.0000000005 M) for 6 days

tag: cell line

value: ESC

tag: treatment

value: Interferon beta

tag: state


title: hESCs, Interferon beta (0.0000000005 M) for 6 days, Exp4


title: 338_CD4_Lung_90_S186_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, Gleevec (0.00001 M) for 6 days, Exp4

source_name: hESCs have been treated with Gleevec (0.00001 M) for 6 days

value: Gleevec


title: hESCs, Gleevec (0.00001 M) for 6 days, Exp5


title: hESCs, Geldanamycin (0.000000001 M) for 6 days, Exp4

source_name: hESCs have been treated with Geldanamycin (0.000000001 M) for 6 days

value: Geldanamycin


title: hESCs, Geldanamycin (0.000000001 M) for 6 days, Exp5


title: 338_CD4_Lung_10_S106_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, Gleevec (0.00001 M) for 6 days, Exp3


title: hESCs, Interferon beta (0.0000000005 M) for 6 days, Exp2


title: hESCs, Interferon beta (0.0000000005 M) for 6 days, Exp1


title: hESCs, Gleevec (0.00001 M) for 6 days, Exp2


title: hESCs, Gleevec (0.00001 M) for 6 days, Exp1


title: hESCs, Geldanamycin (0.000000001 M) for 6 days, Exp2


title: hESCs, Geldanamycin (0.000000001 M) for 6 days, Exp3


title: 338_CD4_Lung_56_S152_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_33_S129_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_52_S148_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_67_S163_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, Interferon beta (0.0000000005 M) for 6 days, Exp3


title: 338_CD4_Lung_16_S112_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_82_S178_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_5_S101_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_75_S171_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_50_S146_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_44_S140_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_11_S107_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_96_S192_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_93_S189_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_70_S166_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_38_S134_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_25_S121_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 338_CD4_Lung_58_S154_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, incubated with culturing medium for 6 days, Exp3

value: culturing medium


title: 338_CD4_Lung_64_S160_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, Galnon (0.00001 M) for 6 days, Exp3

source_name: hESCs have been treated with Galnon (0.00001 M) for 6 days

value: Galnon


title: hESCs, Galnon (0.00001 M) for 6 days, Exp4


title: hESCs, Geldanamycin (0.000000001 M) for 6 days, Exp1


title: hESCs, Galnon (0.00001 M) for 6 days, Exp2


title: 338_CD4_Lung_49_S145_P1

description: Full-length RNAseq (SMART-Seq2) reads

value: Tconv


title: 338_CD4_Lung_43_S139_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, Retionic acid (0.00000001 M) for 6 days, D15_19MK_147

source_name: hESCs have been treated with Retionic acid (0.00000001 M) for 6 days

value: Retionic acid


title: 338_CD4_Lung_22_S118_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, FK506/Cyclosporin A (0.000015 M/ 0.0000025 M) for 6 days, D15_19MK_151

source_name: hESCs have been treated with FK506/Cyclosporin A (0.000015 M/ 0.0000025 M) for 6 days

value: FK506/Cyclosporin A


title: hESCs, incubated with culturing medium for 6 days, Exp2

source_name: hESCs have been incubated with culturing medium for 6 days


title: hESCs, incubated with culturing medium for 6 days, Exp1


title: hESCs, Retionic acid (0.00000001 M) for 6 days, D15_19MK_146


title: hESCs, incubated with culturing medium for 6 days, D15_19MK_156


title: hESCs, incubated with culturing medium for 6 days, D15_17MK_155


title: hESCs, LiCl (0.00000001 M) for 6 days, D15_19MK_154

source_name: hESCs have been treated with LiCl (0.00000001 M) for 6 days

value: LiCl


title: hESCs, incubated with culturing medium for 6 days, Exp4

value: female


title: hESCs, incubated with culturing medium for 6 days, Exp5


title: hESCs, incubated with culturing medium for 6 days, D15_18MK_143


title: 338_CD4_Lung_83_S179_P1

description: Full-length RNAseq (SMART-Seq2) reads

value: Lung


title: hESCs, Galnon (0.00001 M) for 6 days, Exp1

value: differentiated state


title: 338_CD4_Lung_69_S165_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, FK506/Cyclosporin A (0.000015 M/ 0.0000025 M) for 6 days, D15_19MK_152


title: 3642_CD4_Lung_10_S10_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_Lung_81_S81_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_Lung_16_S16_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_Lung_17_S305_P1

description: Full-length RNAseq (SMART-Seq2) reads

value: Treg


title: hESCs, Retionic acid (0.00000001 M) for 6 days, D15_18MK_140


title: 3642_CD4_Lung_88_S88_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_Lung_72_S360_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_Lung_41_S329_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, BPA (0.000000001 M) for 6 days, D15_17MK_116

source_name: hESCs have been treated with BPA (0.000000001 M) for 6 days

value: BPA


title: 3642_Treg_Lung_75_S363_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, Estradiol (0.000000001 M) for 6 days, D15_16MK_126

source_name: hESCs have been treated with Estradiol (0.000000001 M) for 6 days

value: Estradiol


title: hESCs, FK506/Cyclosporin A (0.000015 M/ 0.0000025 M) for 6 days, D15_17MK_111


title: 3642_CD4_Lung_18_S18_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_Lung_93_S93_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, incubated with culturing medium for 6 days, D15_16MK_124


title: hESCs, Estradiol (0.000000001 M) for 6 days, D15_17MK_115


title: hESCs, Estradiol (0.000000001 M) for 6 days, D15_16MK_125


title: hESCs, LiCl (0.00000001 M) for 6 days, D15_14MK_161


title: hESCs, Bisphenol A (0.000000001 M) for 6 days, D15_16MK_122

source_name: hESCs have been treated with Bisphenol A (0.000000001 M) for 6 days

value: Bisphenol A


title: 3642_CD4_Lung_70_S70_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, Bisphenol A (0.000000001 M) for 6 days, D15_16MK_123

value: ESC


title: hESCs, incubated with culturing medium for 6 days, D15_14MK_158


title: hESCs, Estradiol (0.000000001 M) for 6 days, D15_14MK_162


title: 3642_CD4_Lung_72_S72_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_Lung_90_S378_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_Lung_8_S8_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_Lung_61_S61_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_Lung_32_S320_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_Lung_4_S4_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, incubated with culturing medium for 6 days, D15_13MK_107


title: 3642_CD4_Lung_55_S55_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, LiCl (0.00000001 M) for 6 days, D15_13MK_103


title: hESCs, incubated with culturing medium for 6 days, D15_13MK_100


title: hESCs, LiCl (0.00000001 M) for 6 days, D15_11MK_96


title: hESCs, Bisphenol A (0.000000001 M) for 6 days, D15_14MK_160


title: hESCs, LiCl (0.00000001 M) for 6 days, D15_11MK_71


title: hESCs, incubated with culturing medium for 6 days, D15_11MK_79


title: 3642_CD4_Lung_53_S53_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_Lung_60_S60_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, BIO (0.000002 M) for 6 days, D15_08AH_174

source_name: hESCs have been treated with BIO (0.000002 M) for 6 days

value: BIO


title: 3642_CD4_Lung_44_S44_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, CHIR99021 (0.000002 M) for 6 days, D15_08AH_173

source_name: hESCs have been treated with CHIR99021 (0.000002 M) for 6 days


title: 3642_CD4_Lung_85_S85_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_Lung_83_S371_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_Lung_42_S42_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: hESCs, incubated with culturing medium for 6 days, D14_15MK_172


title: M_Ref.3 BALB\c Ref 4 NA weeks

city: Milan

first: Matteo

last: Milani

state: Milan

address: Via Amadeo, 42

country: Italy

institute: IRCCS Istituto Nazionale dei Tumori

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol using an Illumina BeadArray reader

data_processing: Raw data were log2 transformed and normalized with robust spline normalization using the lumi package from Bioconductor

label: Biotin

source_name: Bone marrow tissue

label_protocol: According to Illumina whole genome DASL assay

growth_protocol: MMTV-NeuT transgenic females, and age-matched non transgenic siblings, were sacrified at 6, 12 and 24 weeks of age

extract_protocol: RNA was extracted using Trizol reagent (Life Technologies)

value: Female

tag: genotype

value: BALB\c Ref 4

tag: age (weeks)

tag: tumor grade

tag: tumor burden


title: hESCs, CHIR (0.000002 M) for 6 days, D14_15MK_170

source_name: hESCs have been treated with CHIR (0.000002 M) for 6 days

value: CHIR


title: hESCs, BIO (0.000002 M) for 6 days, D14_15MK_171


title: M_Ref.1 BALB\c Ref 2 NA weeks

value: BALB\c Ref 2


title: hESCs, incubated with culturing medium for 6 days, D15_08AH_175

value: culturing medium


title: M_Ref BALB\c Ref 1 NA weeks

value: BALB\c Ref 1


title: M_17015 BALB\c NeuT+ 6 weeks

value: BALB\c NeuT+

value: no


title: M_Ref.4 BALB\c Ref 5 NA weeks

value: BALB\c Ref 5


title: hESCs, incubated with culturing medium for 6 days, D14_14MK_169

value: female


title: 3642_Treg_Lung_8_S296_P1

description: Full-length RNAseq (SMART-Seq2) reads

value: Lung


title: M_17016 BALB\c NeuT+ 6 weeks


title: 3642_Treg_Lung_81_S369_P1

description: Full-length RNAseq (SMART-Seq2) reads

value: Treg


title: hESCs, CHIR (0.000002 M) for 6 days, D14_14MK_167

value: differentiated state


title: hESCs, BIO (0.000002 M) for 6 days, D14_14MK_168


title: M_17011 BALB\c NeuT- 6 weeks

value: BALB\c NeuT-


title: M_Ref.2 BALB\c Ref 3 NA weeks

value: BALB\c Ref 3


title: 3642_CD4_Lung_54_S54_P1

description: Full-length RNAseq (SMART-Seq2) reads

value: Tconv


title: M_17007 BALB\c NeuT- 6 weeks


title: 3642_CD4_Lung_63_S63_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: M_17010 BALB\c NeuT- 6 weeks


title: M_15656 BALB\c NeuT+ 12 weeks

value: early ca


title: hESCs, CHIR (0.000002 M) for 6 days, D14_14MK_164

value: ESC


title: E16_control_Replicate6 [99382]

city: Klosterneuburg

first: Florian

middle: M

last: Pauler

address: Am Campus 1

country: Austria

institute: Institute of Science and Technology Austria (IST Austria)

data_processing:
Raw reads were delivered as BAM files and converted to fastq format using bamToFastq (bedtools suite v2.26.0) for alignment. Reads within transcripts were counted using STAR_2.5.0c with an index prepared from GRCm38 and Gencode M16 gene annotation. Note that for optimal representation of the long non-coding RNA Meg3 the spliced ENSMUST00000143836.7 transcript was modified to represent a single exon transcript. Parameters used for STAR alignment: --outFilterMultimapNmax 1 --outSAMstrandField intronMotif --outFilterIntronMotifs RemoveNoncanonical --quantMode GeneCounts
Genome_build: GRCm38/mm10
Supplementary_files_format_and_content: Read counts in transcripts as reported by STAR as tab delimited text

molecule: polyA RNA

growth_protocol: Mouse protocols were reviewed by institutional preclinical core facility (PCF) at IST Austria and all breeding and experimentation was performed under a license approved by the Austrian Federal Ministry of Science and Research in accordance with the Austrian and EU animal laws. Mice were maintained and housed in animal facilities with a 12-hour day/night cycle and adequate food/water conditions according to IST Austria institutional regulations. Mouse lines with chromosome 7 MADM cassettes: MADM-7-GT JAX stock # 021457, MADM-7-TG JAX stock # 021458, Cdkn1c-flox allele: (Matsumoto et al. 2011, PMID: 21885021), Emx1-Cre: JAX stock # 005628. All MADM-based analyses were carried out in a mixed C57BL/6J, CD1 genetic background.

extract_protocol:
sorted cells were directly processed without RNA extraction
Smart-Seq2 (VBCF GmbH Vienna)

treatment_protocol: Pregnant females were sacrificed and E16 embryos were collected. Neocortex area was dissected. Single individuals were used as replicates. Single cell suspensions were prepared by using Papain containing L-cysteine and EDTA (vial 2, Worthington), DNase I (vial 3, Worthington), Ovomucoid protease inhibitor (vial 4, Worthington), EBSS (Thermo Fisher Scientific), DMEM/F12 (Thermo Fisher Scientific), FBS and HS. All vials from Worthington kit were reconstituted according to the manufacturer’s instructions using EBSS. The dissected brain area was directly placed into Papain-DNase solution (20units/ml papain and 1000 units DNase). Enzymatic digestion was performed for 30min at 37°C in a shaking water bath. Next, solution 2 (EBSS containing 0.67mg Ovomucoid protease inhibitor and 166.7 U/ml DNase I) was added, the whole suspension was thoroughly mixed and centrifuged for 5min at 1000rpm at RT. Supernatant was removed and cell pellet was resuspended in solution 2. Trituration with p1000 pipette was performed to mechanically dissolve any remaining tissue parts. DMEM/F12 was added to the cell suspension as a washing solution, followed by a centrifugation step of 5min with 1500rpm at RT. Cells were resuspended in media (DMEM/F12 containing 10% FBS and 10% HS) and kept on ice until sorted. Right before sorting, cell suspension was filtered using a 40µm cell strainer. FACS was performed on a BD FACS Aria III using 100 nozzle and keeping sample and collection devices (0.8ml PCR tubes) at 4°C. Duplet exclusion was performed to ensure sorting of true single cells. Cells were sorted into 4µl lysis buffer (0.2% Triton X-100, 2U/µl RNase Inhibitor [Clonetech]). Immediately after sorting was completed samples were transferred into a 96 well plate (Bio-Rad) that was kept on dry ice. All MADM-labeled cells (GFP+, tdT+ and GFP+/tdT+) were sorted together in order to ensure sufficient number of cells (400 cells) as starting material.

tag: strain background

tag: age

tag: cdkn1c locus

value: control

tag: cre

value: cortex

tag: madm

value: Chr. 7


title: M_17014 BALB\c NeuT+ 6 weeks

value: Female


title: hESCs, incubated with culturing medium for 6 days, D15_13MK_166

value: culturing medium


title: hESCs, BIO (0.000002 M) for 6 days, D14_13MK_165

value: BIO


title: M_15657 BALB\c NeuT- 12 weeks

value: normal


title: M_15659 BALB\c NeuT+ 12 weeks

value: BALB\c NeuT+

value: severe dys


title: E16_control_Replicate4 [99380]

tag: tissue


title: E16_control_Replicate5 [99381]


title: M_15653 BALB\c NeuT- 12 weeks

tag: gender


title: E16_control_Replicate7 [99383]


title: M_15655 BALB\c NeuT+ 12 weeks


title: M_14204 BALB\c NeuT+ 6 weeks

value: ripetizione in corso


title: 3642_CD4_Lung_95_S95_P1

description: Full-length RNAseq (SMART-Seq2) reads

tag: mouse-id

value: Lung

tag: cell-id-assigned

tag: cell-id-sorted


title: M_14202 BALB\c NeuT+ 6 weeks


title: M_14200 BALB\c NeuT- 6 weeks

value: mild/moderate dys


title: 3642_CD4_Lung_45_S45_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_Lung_9_S9_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: M_15654 BALB\c NeuT- 12 weeks

value: BALB\c NeuT-


title: M_14198 BALB\c NeuT+ 6 weeks


title: M_14205 BALB\c NeuT- 6 weeks


title: E16_control_Replicate2 [99378]


title: M_15652 BALB\c NeuT- 12 weeks


title: M_13716 BALB\c NeuT- 24 weeks


title: E16_control_Replicate1 [99377]


title: 3642_Treg_Lung_54_S342_P1

description: Full-length RNAseq (SMART-Seq2) reads

value: Treg


title: 3642_Treg_Lung_16_S304_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: M_13711 BALB\c NeuT+ 24 weeks


title: E16_control_Replicate3 [99379]


title: E16_KO_Replicate2 [99375]

value: KO


title: 3642_CD4_Lung_33_S33_P1

description: Full-length RNAseq (SMART-Seq2) reads

value: Tconv


title: 3642_CD4_Lung_17_S17_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: E16_KO_Replicate1 [99374]


title: 3642_CD4_Lung_94_S94_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_Lung_11_S11_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: E16_KO_Replicate3 [99376]


title: 3642_Treg_Lung_48_S336_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: M_13710 BALB\c NeuT- 24 weeks


title: M_12478 BALB\c NeuT+ 12 weeks

value: early carcinoma


title: M_13709 BALB\c NeuT+ 24 weeks


title: 3642_CD4_Lung_68_S68_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: M_13707 BALB\c NeuT- 24 weeks


title: M_14197 BALB\c NeuT- 6 weeks


title: M_13705 BALB\c NeuT+ 24 weeks


title: M_13703 BALB\c NeuT+ 24 weeks


title: M_12476 BALB\c NeuT+ 12 weeks

value: early ca


title: M_12477 BALB\c NeuT- 12 weeks


title: M_13712 BALB\c NeuT- 24 weeks


title: M_12199 BALB\c NeuT- 6 weeks


title: M_12475 BALB\c NeuT+ 12 weeks


title: M_12197 BALB\c NeuT+ 6 weeks


title: M_12159 BALB\c NeuT+ 6 weeks


title: M_12198 BALB\c NeuT- 6 weeks


title: Healthy volunteer-8

city: Chengdu

first: Yi

last: Wang

state: Sichuan

address: 132 West First Section First Ring Road

country: China

institute: Sichuan Provincial Orthopedic Hospital

description: Gene expression in  human blood

hyb_protocol: 1.5 ug of Cy3-labelled cRNA (specific activity >10.0 pmol Cy3/ug cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 250 ml containing 1x Agilent fragmentation buffer and 2x Agilent blocking agent following the manufacturers instructions. On completion of the fragmentation reaction, 250 ml of 2x Agilent hybridization buffer was added to the fragmentation mixture and hybridized to Agilent Whole Human Genome Oligo Microarrays (G4112A) for 17 hours at 65Â°C in a rotating Agilent hybridization oven.  After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37Â°C GE Wash buffer 2 (Agilent), then dried immediately by brief centrifugation.

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2505B) using one color scan setting for 1x44k array slides (Scan Area 61x21.6 mm, Scan resolution 10um, Dye channel is set to Green and Green PMT is set to 100%).

data_processing: The scanned images were analyzed with Feature Extraction Software 9.1 (Agilent) using default parameters (protocol GE1-v1_91 and Grid: 012391_D_20060331) to obtain background subtracted and spatially detrended Processed Signal intensities.  Features flagged in Feature Extraction as Feature Non-uniform outliers were excluded.

source_name: Peripheral Blood

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).  Dye incorporation and cRNA yield were checked with the NanoDrop ND-1000 Spectrophotometer.

extract_protocol: Not provided

value: whole blood

tag: diagnosis

value: healthy


title: M_12160 BALB\c NeuT+ 6 weeks

value: Female


title: 3642_Treg_Lung_77_S365_P1

description: Full-length RNAseq (SMART-Seq2) reads

source_name: mouse tissue


title: M_12157 BALB\c NeuT+ 24 weeks


title: Healthy volunteer-7

description: Gene expression in  human blood


title: 3642_CD4_Lung_21_S21_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_Lung_5_S5_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: M_12152 BALB\c NeuT- 24 weeks


title: M_12154 BALB\c NeuT+ 24 weeks


title: Healthy volunteer-5

description: Gene expression in  human blood


title: 3642_CD4_Lung_19_S19_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_Lung_28_S316_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_Lung_12_S12_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_CD4_Lung_37_S37_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_Lung_6_S294_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: 3642_Treg_Lung_43_S331_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: Healthy volunteer-3

description: Gene expression in  human blood


title: M_12149 BALB\c NeuT- 12 weeks


title: M_11771 BALB\c NeuT+ 12 weeks


title: M_12148 BALB\c NeuT- 12 weeks


title: Healthy volunteer-4

description: Gene expression in  human blood


title: M_12150 BALB\c NeuT- 6 weeks


title: M_11766 BALB\c NeuT+ 12 weeks


title: 3642_CD4_Lung_80_S80_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: Healthy volunteer-1

description: Gene expression in  human blood


title: M_11769 BALB\c NeuT+ 12 weeks


title: Healthy volunteer-6

description: Gene expression in  human blood


title: M_11765 BALB\c NeuT- 12 weeks


title: M_11752 BALB\c NeuT- 12 weeks


title: IDD patient-8

description: Gene expression in  human blood

value: intervertebral disc degeneration


title: Trail knock out 1

city: Sydney

first: Ruby

middle: CY

last: Lin

state: NSW

address: 176 Hawkesbury Road, Westmead

country: Australia

institute: The Westmead Institute for Medical Research

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Gene ST 1.0 were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.

source_name: Aorta from 6 weeks old Trail knockout

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

growth_protocol: Aortic tissue from 6 weeks old mice were collected for RNA extraction

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: Gene expression of aortic tissue from wildtype C57Bl6/J mice were compared to Trail-/- knockout mice

tag: strain

value: Aorta

value: 6 weeks old

value: Trail knockout


title: 3642_Treg_Lung_91_S379_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: Wildtype 2

source_name: Aorta from 6 weeks old Wildtype

value: Wildtype


title: Trail knock out 3


title: 3642_CD4_Lung_43_S43_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: Wildtype 1


title: IDD patient-7

description: Gene expression in  human blood


title: Healthy volunteer-2

description: Gene expression in  human blood


title: Wildtype 3


title: 3642_Treg_Lung_36_S324_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: IDD patient-6

description: Gene expression in  human blood


title: Trail knock out 2


title: IDD patient-5

description: Gene expression in  human blood


title: 3642_Treg_Lung_67_S355_P1

description: Full-length RNAseq (SMART-Seq2) reads


title: Coho smolt Liver_4218 [62892]

city: Nanaimo

first: Shaorong

last: Li

state: British Columbia

address: 3190 Hammond Bay Road

department: Salmon and Freshwater Ecosystems Division

country: Canada

institute: Fisheries and Oceans Canada

description:
Sample array position within slide:
Array1Onkism0809_liver_10322
raw data files:
Onkism0809_liver_10322.txt
Onkism0809_liver_10322_ref.txt
*ref.txt is the raw file for the pooled reference sample
sample name in processed data file:
62892

hyb_protocol: Gene expression was quantified using 44K cGRASP salmonid microarrays (Koop et al., 2008) for each of the four tissues. Fragmented sample and reference cRNA (dye coupled aRNA) in GEx Hybridization HI-RPM buffer (Agilent) were hybridized to microarray slides using aHS4800 Pro Hybridization Station (TecanTrading AG), which automatically washed, hybridized, denatured, and dried the slides. To reduce technical variance, hybridizations were performed by a single technician in batches of up to 48 samples during a two-week period.

scan_protocol: Slides were read using a LS Reloaded scanner (TecanTrading AG) and Array- Pro Analyzer software. Images were quantified using ImaGene software (BioDiscovery) with spots being automatically flagged if both dye wavelengths were empty, poor, or negative and manually flagged for reasons such as filaments, blobs, or smears.

data_processing:
Low quality slides (>50% missing spots or spatial problems) and spots (<2 standard deviations from the mean background at both dye wavelengths) were removed using BASE software (Lund University). Local background correction using background mean and a lowess normalization algorithm were also applied.
The file processed_data_liver_withallcontrols.txt includes the normalized log2 background-subtracted intensity ratio (each fish/reference) with 'flagged' spots or poor signals removed for all probes including the DCP* controls. Sample data tables do not include the DCP* control probes.

label: Alexa 555

organism: Oncorhynchus kisutch

source_name: liver

label_protocol: RNA extracts were amplified for microarray hybridizations using Amino Allyl MessageAmpª II-96 kits (Ambion). Amplified RNA extracts (5?g, aRNA) were labelled with Alexa dyes using Indirect Labelling kits (Invitrogen). Dye coupling reactions were performed using all aRNA samples with Alexa 555 dye and the reference aRNA (a pool of all samples for a tissue) with Alexa 647.

extract_protocol: RNA was extracted from four tissues separately: brain, gill, muscle, and liver. Tissues (10mg) were homogenized in TRI reagent (Ambion) using stainless steel beads on a MM301 mixer mill (Retsch Inc.). Aqueous layer homogenate aliquots (100?L) were transferred to three U-bottom 96 well plates. RNA was extracted from the homogenates using the ÔNo-Spin ProcedureÕ of MagMAX-96 for Microarrays Total RNA Isolation kits (Ambion) and a Biomek NXP automation workstation (Beckman- Coulter). RNA yield and purity were measured by spectrophotometry (A?260 value or A?260/A?280 ratio). RNA extracts were stored in a ?80¡C freezer.

value: liver

tag: FISH #

tag: fw/sw

value: SW

tag: year

tag: season

tag: origin

value: Wild

tag: fork length (cm)

tag: total mass (g)

tag: Sex

value: F

tag: latitude

tag: longitude

value: WCVI

value: Salish

label: Alexa 647

source_name: liver from all samples in the series

tag: sample type

value: Pooled cRNA reference


title: 3642_CD4_Lung_67_S67_P1

description: Full-length RNAseq (SMART-Seq2) reads

tag: tissue

value: Lung

value: Tconv


title: IDD patient-4

description: Gene expression in  human blood

value: whole blood


title: IDD patient-3

description: Gene expression in  human blood


title: Coho smolt Liver_4217 [62761]

description:
Sample array position within slide:
Array4Onkism0809_liver_10276
raw data files:
Onkism0809_liver_10276.txt
Onkism0809_liver_10276_ref.txt
*ref.txt is the raw file for the pooled reference sample
sample name in processed data file:
62761

value: Hatchery


title: Coho smolt Liver_4216 [62886]

description:
Sample array position within slide:
Array2Onkism0809_liver_10103
raw data files:
Onkism0809_liver_10103.txt
Onkism0809_liver_10103_ref.txt
*ref.txt is the raw file for the pooled reference sample
sample name in processed data file:
62886

value: Columbia

value: North


title: Coho smolt Liver_4207 [62877]

description:
Sample array position within slide:
Array2Onkism0809_liver_10276
raw data files:
Onkism0809_liver_10276.txt
Onkism0809_liver_10276_ref.txt
*ref.txt is the raw file for the pooled reference sample
sample name in processed data file:
62877

value: M


title: IDD patient-2

description: Gene expression in  human blood

value: intervertebral disc degeneration


title: Coho smolt Liver_4213 [62932]

description:
Sample array position within slide:
Array1Onkism0809_liver_10275
raw data files:
Onkism0809_liver_10275.txt
Onkism0809_liver_10275_ref.txt
*ref.txt is the raw file for the pooled reference sample
sample name in processed data file:
62932