title: MED13-13lfl_ES_UNT_rep2_CapC_set1

description:
processed data file:
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title: FBXL19fl_RA_TAM_rep2_CapC_set1

status: Public on Jan 21 2020

type: SRA

city: Oxford

first: Angelika

last: Feldmann

state: England

address: South Parks Road

country: United Kingdom

institute: University of Oxford, Department of Biochemistry

description:
processed data file:
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Megf10_id5749717_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
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Cabp1_id1973991_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
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Hoxb1_id3958722_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Hoxb5_id3958568_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Hpgd_id2929245_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Klf2_id2969645_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Lfng_id2036913_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Mapkapk2_id323408_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Mcm3_id47198_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Mmp15_id3027407_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Mmp2_id3020918_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Gadd45b_id3605594_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Pla2r1_id622128_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Ptprn_id180345_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Ptrf_id3970218_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
S100a10_id1149986_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Nkx1-2_id2768203_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Scd1_id5933791_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Supt4a_id3937444_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Tal2_id1439711_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Hnf1a_id1973455_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Ttf1_id545321_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Vipr2_id4301021_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Abcg1_id5455875_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Asic1_id5143940_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Capn2_id449358_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Cd24a_id3512611_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Cdh11_id3045509_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Chat,Slc18a3_id4678235_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
S1pr3_id4431509_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Efs_id4735760_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Ephb3_id5201786_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Fhl3_id1618914_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Gsto1_id5942000_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Hoxb3_id3958676_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Igfbp5_id174464_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Itga5_id5153214_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Lama3_id5639740_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Large_id2972265_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Ndufa4_id2086878_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Nfkbia_id4151479_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Numbl_id2500220_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Pou3f1_id1618825_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Prlr_id4923288_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Pros1_id5303530_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Ptprd_id1501257_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Scnn1g_id2741113_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
St8sia1_id2413404_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Sox2_id1003349_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Tcea3_id1647459_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Tubb5_id5468158_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Ercc5_id104061_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Amfr_id3024072_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
C1ql1_id3975329_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Creg1_id407574_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Twf2_id3367775_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
St6galnac5_id1294639_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Asns_id2075943_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Fkbp9_id2196958_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Cpt1a_id5832120_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Frg1_id2894123_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Hebp1_id2394582_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Lrpap1_id1775334_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Atp5l_id3218128_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Tnfrsf19_id4750989_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Scly_id220349_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Gipc2_id1292782_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Insm1_id832241_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Ctnnal1_id1447659_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Ntsr1_id917074_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Slc1a4_id3770078_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Ppie_id1615141_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Htra1_id2764107_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Arl10_id4439192_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Angptl4_id5462755_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Egr4_id2270850_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Snrpb2_id824501_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Shank3_id5119599_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Isl1_id4592795_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Slc4a8_id5146726_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Foxj2_id2362399_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Paqr4_id5438307_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Tbc1d20_id847836_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Rexo2_id3226797_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Tomm7_id1746923_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Llph_id3700641_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Tma16_id2954862_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Mrps14_id394136_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Isoc1_id5753246_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Polr2e_id3603475_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Mrps25_id2287411_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Sorcs3_id5942915_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Uqcrfs1_id4380171_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Tril_id2189634_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Eef1g_id5846437_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Snrpd3_id3591800_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Map1lc3b_id3091625_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Pkp2_id5188447_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Dph2_id1601224_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Ufm1_id1050580_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Tmem86a_id2552408_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Mrpl19_id2261989_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Cdc42ep3_id5577780_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Ndufb4_id5241422_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
1110007C09Rik_id4425616_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Mocos_id5670125_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Dus1l_id4018609_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Slc52a3_id847064_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Rhpn2_id2522257_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Nkd2_id4487550_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Wdr89_id4201123_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Lrpprc_id5590892_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Phykpl_id3847043_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Zfp493_id4472135_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Ptchd4_id5486398_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Zbtb8a_id1630475_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Irak3_id3700588_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Zfp819_id2543728_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Pck2_id4737370_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Pcdh1_id5703772_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Fam101b_id3908213_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Sgpp1_id4201286_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Hspa8_id3208123_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Kcnn1_id2965914_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Spred2_id3769103_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Tshz2_id890477_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Acss1_id843594_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Nphs2_id384824_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Arhgef5_id2164246_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Abhd17c_id2645639_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Cdcp1_id3409272_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Cisd1_id3581396_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Hoxb2_id3958685_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Smim3_id5757976_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Socs7_id3961207_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Nlgn1_id982921_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Susd4_id449923_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Zswim6_id4572766_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Zfp503_id4652828_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Pim3_id5118011_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Lace1_id3510061_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Lrrc3b_id4635973_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Cpped1_id5177046_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Aars_id3066336_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Prss50_id3379869_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Slc1a3_id4919615_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Rbm17_id500778_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Cd109_id3300227_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Cadm4_id2492585_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Gpr156_id5242053_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Cmtm4_id3049681_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Acsf2_id3954253_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Nfkbid_id2508402_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Oscp1_id1622319_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Rbm34_id3104231_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Sh3rf3_id3550886_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Tbcel_id3212157_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Galnt18_id2716596_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Mamdc2_id5882597_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Fbxl22_id3270912_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Mael_id408645_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Mroh1_id5086983_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Zfp770_id754414_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Prtg_id3286160_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Aard_id5025738_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Rab11fip4_id3917225_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Pld5_id434386_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Nwd2_id1845589_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Samd12_id5030415_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Arl4c_id214048_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Arap2_id1843354_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Tagln2_id424572_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Zfp365_id3573106_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Mapkapk3_id3370575_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Champ1_id2826164_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Tnrc6c_id4011171_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Dagla_id5850122_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Bahcc1_id4017212_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Mex3d_id3604301_FBXL19_RA_TAM_bg.bed_bg_sorted.bw

library_source: genomic

data_processing:
library strategy: CaptureC
For CaptureC, paired-end reads were aligned and filtered for HiC artefacts using HiCUP (Wingett S, et al. (2015)) and Bowtie2 (Langmead and Salzberg, 2012) with fragment filter set to 100-800bp. Read counts of reads aligning to captured gene promoters and interaction scores (=significant interactions) were then called  by CHiCAGO (Cairns et al., 2016).
For visualisation of CaptureC data weighted pooled read counts from chicago data files were normalized to total read count aligning to captured gene promoters in the sample and further to the number of promoters in the respective capture experiment. Bigwig files were generated from these normalized read counts.
For comparative boxplot analysis interactions called by chicago (score >= 5) across all samples were aggregated and interactions with a distance of less than 4 DpnII fragments were merged to a single interaction peak. For each interaction peak we then quantified mean normalized read count and chicago score of all overlapping DpnII fragments.
Genome_build: mm10
Supplementary_files_format_and_content: bigWig files showing the genome coverage of normalized read counts for each sample and each promoter were generated from chicago data object.

molecule: genomic DNA

organism: Mus musculus

source_name: mESCs_tamoxifen-treated (96hr OHT),  retinoic-acid treated (72hr RA), CaptureC

growth_protocol: Mouse embryonic stem cells were grown on gelatin-coated plates at 37°C and 5% CO2, in Dulbecco’s Modified Eagle Medium (DMEM) supplemented with 15% fetal bovine serum (Labtech), 2 mM L-glutamine (Life Technologies), 1x penicillin-streptomycin solution (Life Technologies), 1x non-essential amino acids (Life Technologies), 0.5 mM beta-mercaptoethanol (Life Technologies), and 10 ng/mL leukemia inhibitory factor. Human HEK293T cells used for calibrated ChIP-seq were grown at 37°C and 5% CO2, in Dulbecco’s Modified Eagle Medium (DMEM) supplemented with 10% fetal bovine serum (Labtech), 2 mM L-glutamine (Life Technologies), 1x penicillin-streptomycin solution (Life Technologies), and 0.5 mM beta-mercaptoethanol (Life Technologies). Drosophila S2 (SG4) cells were grown adhesively at 25°C in Schneider’s Drosophila Medium (Life Technologies), supplemented with 1x penicillin-streptomycin solution (Life Technologies) and 10% heat-inactivated fetal bovine serum (Labtech).

extract_protocol:
CaptureC libraries were prepared as described previously (Hughes et al., Nature Genetics 2014). Briefly, 10 Million mouse ES cells were trypsinized, collected in 50ml falcon tubes in 9.3ml media and crosslinked with 1.25ml 16% formaldehyde for 10min at room temperature. Cells were quenched with 1.5M glycine, washed with PBS and lysed for 20 minutes at 4oC lysis buffer (10mM Tris pH 8, 10mM NaCl, 0.2% NP-40, supplemented with complete proteinase inhibitors) prior to snap freezing in 1ml lysis buffer at -80oC.
Lysates were then thawed on ice, pelleted and resuspended in 650µl 1x DpnII buffer (NEB). Three 1.5ml tubes with 200µl lysate each were treated in parallel with SDS (0.28% final concentration, 1hr, 37 oC, interval shaking 500rpm, 30sec on/30sec off), quenched with trypsin (1.67% final concentration, 1hr, 37 oC, interval shaking 500rpm, 30sec on/30sec off) and subjected to a 24 hour digestion with 3x10µl DpnII (homemade, 37 oC, interval shaking 500rpm, 30sec on/30sec off). Each chromatin aliquot was independently ligated with 8 µl T4 Ligase (240 U) in a volume of 1440µl (20 hours, 16oC). Following this, the nuclei containing ligated chromatin were pelleted to remove any non-nuclear chromatin, reverse-crosslinked and the ligated DNA was phenol-chloroform purified. The sample was resupended in 300µl water and sonicated 13x (Pico Bioruptor, 30sec on, 30sec off) or until a fragment size of approximately 200bp was reached. Fragments were size selected using AmpureX beads (Beckman Coulter: A63881, selection ratios: 0.85x / 0.4x). 2x 1-5µg of DNA were adaptor ligated and indexed using the NEBNext DNA library Prep Reagent Set (New England Biolabs: E6040S/L) and NEBNext Multiplex Oligos for Illumina Primer sets 1 (New England: E7335S/L) and 2 (New England: E7500S/L). The libraries were amplified 7x using Herculase II Fusion Polymerase kit (Agilent: 600677). Libraries were hybridized in teh following way: Probes were designed using the online tool by the Hughes lab (CapSequm: http://apps.molbiol.ox.ac.uk/CaptureC/cgi-bin/CapSequm.cgi) to be either 120bp (Sox2) or 70bp long each, two probes for each promoter of interest. The probes were pooled at a 2.9nM each and the samples were multiplexed by mass prior to hybridization. Hybridization was carried out using the Nimblegen SeqCap system (Roche, Nimblegen SeqCap EZ HE-oligo kit A # 06777287001, Nimblegen SeqCap EZ HE-oligo kit B # 06777317001, Nimblegen SeqCap EZ Accessory kit v2 # 07145594001, Nimblegen SeqCap EZ Hybridisation and wash kit # 05634261001) according to Roche protocol for 72 hours followed by a 24 hours hybridization (double Capture). The captured libraries were sequenced on Illumina NextSeq.

treatment_protocol: To induce conditional removal of the Fbxl19 CxxC domain or Med13 and Med13l in FBXL19fl and MED13/13lfl ESC lines, cells were treated with 800nM 4-hydroxytamoxifen (TAM) for 96 hours. To induce differentiation, ES cells were treated with 1uM retinoic acid (RA) for 72 hours.

tag: cell type

value: Mouse embryonic stem cells

tag: cell line background

tag: cell line

tag: genotype

value: Fbxl19-CxxCfl/fl; Rosa26::ERT2-Cre

tag: replicate

tag: treatment agent

value: tamoxifen (OHT), retinoic acid (RA)

tag: treatment time point


title: FBXL19fl_ES_TAM_rep2_CapC_set2

description:
processed data file:
Fli1_id3186524_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Mn1_id1964984_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Kif26b_id440003_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Dlk1_id4283906_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Spry1_id1010657_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Igdcc3_id3267532_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Col26a1_id2027715_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Samd14_id3955395_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Atoh8_id2237664_FBXL19_ES_TAM_bg.bed_bg_sorted.bw

source_name: mESCs_tamoxifen-treated (96hr OHT), CaptureC

value: tamoxifen (OHT)

value: 96 hr


title: FBXL19fl_ES_TAM_rep4_CapC_set2


title: FBXL19fl_RA_TAM_rep1_CapC_set2

description:
processed data file:
Fli1_id3186524_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Mn1_id1964984_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Kif26b_id440003_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Dlk1_id4283906_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Spry1_id1010657_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Igdcc3_id3267532_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Col26a1_id2027715_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Samd14_id3955395_FBXL19_RA_TAM_bg.bed_bg_sorted.bw
Atoh8_id2237664_FBXL19_RA_TAM_bg.bed_bg_sorted.bw


title: FBXL19fl_RA_UNT_rep2_CapC_set2

description:
processed data file:
Fli1_id3186524_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Mn1_id1964984_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Kif26b_id440003_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Dlk1_id4283906_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Spry1_id1010657_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Igdcc3_id3267532_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Col26a1_id2027715_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Samd14_id3955395_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Atoh8_id2237664_FBXL19_RA_UNT_bg.bed_bg_sorted.bw

source_name: mESCs_control, retinoic-acid treated (72hr RA), CaptureC

value: retinoic acid (RA)

value: 72 hr


title: FBXL19fl_ES_TAM_rep1_CapC_set2


title: FBXL19fl_RA_UNT_rep2_CapC_set1

description:
processed data file:
Tpm4_id2969160_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Megf10_id5749717_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Ckap2_id2847141_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Ccdc177_id4213506_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Ankrd6_id1387983_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Pdp2_id3050157_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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Lonrf1_id2881524_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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1500009L16Rik_id3612757_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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E030018B13Rik_id2596176_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Sema6d_id778751_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Inafm2_id765330_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Cabp1_id1973991_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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Arg1_id3465762_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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Casp2_id2161600_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Cdh6_id4930340_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Cnn2_id3603335_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Col8a1_id5290658_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Epha5_id1896100_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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Fzd8_id5631876_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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Hoxb1_id3958722_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Hoxb5_id3958568_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Hpgd_id2929245_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Klf2_id2969645_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Lfng_id2036913_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Mapkapk2_id323408_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Mcm3_id47198_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Mmp15_id3027407_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Mmp2_id3020918_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Gadd45b_id3605594_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Pla2r1_id622128_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Ptprn_id180345_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Ptrf_id3970218_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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Tal2_id1439711_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Hnf1a_id1973455_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Ttf1_id545321_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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Cd24a_id3512611_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Cdh11_id3045509_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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S1pr3_id4431509_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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Fhl3_id1618914_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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Igfbp5_id174464_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Itga5_id5153214_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Lama3_id5639740_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Large_id2972265_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Ndufa4_id2086878_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Nfkbia_id4151479_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Numbl_id2500220_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Pou3f1_id1618825_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Prlr_id4923288_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Pros1_id5303530_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Ptprd_id1501257_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Scnn1g_id2741113_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
St8sia1_id2413404_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Sox2_id1003349_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Tcea3_id1647459_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Tubb5_id5468158_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Ercc5_id104061_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Amfr_id3024072_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
C1ql1_id3975329_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Creg1_id407574_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Twf2_id3367775_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
St6galnac5_id1294639_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Asns_id2075943_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Fkbp9_id2196958_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Cpt1a_id5832120_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Frg1_id2894123_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Hebp1_id2394582_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Lrpap1_id1775334_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Atp5l_id3218128_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Tnfrsf19_id4750989_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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Gipc2_id1292782_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Insm1_id832241_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Ctnnal1_id1447659_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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Slc1a4_id3770078_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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Htra1_id2764107_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Arl10_id4439192_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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Mrps14_id394136_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Isoc1_id5753246_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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Mrps25_id2287411_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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Dph2_id1601224_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Ufm1_id1050580_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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Mocos_id5670125_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
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Nkd2_id4487550_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Wdr89_id4201123_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Lrpprc_id5590892_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Phykpl_id3847043_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Zfp493_id4472135_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Ptchd4_id5486398_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Zbtb8a_id1630475_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Irak3_id3700588_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Zfp819_id2543728_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Pck2_id4737370_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Pcdh1_id5703772_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Fam101b_id3908213_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Sgpp1_id4201286_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Hspa8_id3208123_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Kcnn1_id2965914_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Spred2_id3769103_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Tshz2_id890477_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Acss1_id843594_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Nphs2_id384824_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Arhgef5_id2164246_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Abhd17c_id2645639_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Cdcp1_id3409272_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Cisd1_id3581396_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Hoxb2_id3958685_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Smim3_id5757976_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Socs7_id3961207_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Nlgn1_id982921_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Susd4_id449923_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Zswim6_id4572766_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Zfp503_id4652828_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Pim3_id5118011_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Lace1_id3510061_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Lrrc3b_id4635973_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Cpped1_id5177046_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Aars_id3066336_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Prss50_id3379869_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Slc1a3_id4919615_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Rbm17_id500778_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Cd109_id3300227_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Cadm4_id2492585_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Gpr156_id5242053_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Cmtm4_id3049681_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Acsf2_id3954253_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Nfkbid_id2508402_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Oscp1_id1622319_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Rbm34_id3104231_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Sh3rf3_id3550886_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Tbcel_id3212157_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Galnt18_id2716596_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Mamdc2_id5882597_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Fbxl22_id3270912_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Mael_id408645_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Mroh1_id5086983_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Zfp770_id754414_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Prtg_id3286160_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Aard_id5025738_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Rab11fip4_id3917225_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Pld5_id434386_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Nwd2_id1845589_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Samd12_id5030415_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Arl4c_id214048_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Arap2_id1843354_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Tagln2_id424572_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Zfp365_id3573106_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Mapkapk3_id3370575_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Champ1_id2826164_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Tnrc6c_id4011171_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Dagla_id5850122_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Bahcc1_id4017212_FBXL19_RA_UNT_bg.bed_bg_sorted.bw
Mex3d_id3604301_FBXL19_RA_UNT_bg.bed_bg_sorted.bw


title: FBXL19fl_ES_TAM_rep3_CapC_set1

description:
processed data file:
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Megf10_id5749717_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ckap2_id2847141_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ccdc177_id4213506_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
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Slc47a2_id3871357_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Asic2_id3923197_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
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Evi5l_id2802851_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Arrdc3_id4506220_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Cep126_id3124148_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
C77370_id6243560_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Lonrf1_id2881524_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ermp1_id5897272_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Polr3a_id4659089_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ccdc142_id2265006_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Stat5b_id3969874_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Tiam2_id5387471_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ednrb_id4854605_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Syce1_id2788219_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ppfia4_id331310_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
1500009L16Rik_id3612757_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Dnajc13_id3362998_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Adamtsl3_id2641148_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Pak3_id6344953_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
E030018B13Rik_id2596176_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Sema6d_id778751_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Inafm2_id765330_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Cabp1_id1973991_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Prdx3_id5973264_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Aplp1_id2508467_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Arg1_id3465762_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Rhob_id4035130_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Casp2_id2161600_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Cdh6_id4930340_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Cnn2_id3603335_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Col8a1_id5290658_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Epha5_id1896100_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Mpzl2_id3218449_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Fasn_id4018679_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Fzd7_id142589_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Fzd8_id5631876_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Gas1_id4452406_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Hoxb1_id3958722_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Hoxb5_id3958568_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Hpgd_id2929245_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Klf2_id2969645_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Lfng_id2036913_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Mapkapk2_id323408_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Mcm3_id47198_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Mmp15_id3027407_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Mmp2_id3020918_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Gadd45b_id3605594_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Pla2r1_id622128_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ptprn_id180345_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ptrf_id3970218_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
S100a10_id1149986_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Nkx1-2_id2768203_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Scd1_id5933791_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Supt4a_id3937444_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Tal2_id1439711_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Hnf1a_id1973455_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ttf1_id545321_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Vipr2_id4301021_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Abcg1_id5455875_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Asic1_id5143940_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Capn2_id449358_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Cd24a_id3512611_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Cdh11_id3045509_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Chat,Slc18a3_id4678235_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
S1pr3_id4431509_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Efs_id4735760_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ephb3_id5201786_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Fhl3_id1618914_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Gsto1_id5942000_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Hoxb3_id3958676_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Igfbp5_id174464_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Itga5_id5153214_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Lama3_id5639740_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Large_id2972265_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ndufa4_id2086878_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Nfkbia_id4151479_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Numbl_id2500220_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Pou3f1_id1618825_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Prlr_id4923288_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Pros1_id5303530_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ptprd_id1501257_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Scnn1g_id2741113_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
St8sia1_id2413404_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Sox2_id1003349_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Tcea3_id1647459_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Tubb5_id5468158_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ercc5_id104061_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Amfr_id3024072_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
C1ql1_id3975329_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Creg1_id407574_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Twf2_id3367775_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
St6galnac5_id1294639_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Asns_id2075943_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Fkbp9_id2196958_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Cpt1a_id5832120_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Frg1_id2894123_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Hebp1_id2394582_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Lrpap1_id1775334_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Atp5l_id3218128_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Tnfrsf19_id4750989_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Scly_id220349_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Gipc2_id1292782_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Insm1_id832241_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ctnnal1_id1447659_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ntsr1_id917074_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Slc1a4_id3770078_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ppie_id1615141_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Htra1_id2764107_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Arl10_id4439192_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Angptl4_id5462755_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Egr4_id2270850_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Snrpb2_id824501_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Shank3_id5119599_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Isl1_id4592795_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Slc4a8_id5146726_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Foxj2_id2362399_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Paqr4_id5438307_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Tbc1d20_id847836_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Rexo2_id3226797_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Tomm7_id1746923_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Llph_id3700641_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Tma16_id2954862_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Mrps14_id394136_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Isoc1_id5753246_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Polr2e_id3603475_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Mrps25_id2287411_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Sorcs3_id5942915_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Uqcrfs1_id4380171_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Tril_id2189634_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Eef1g_id5846437_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Snrpd3_id3591800_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Map1lc3b_id3091625_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Pkp2_id5188447_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Dph2_id1601224_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ufm1_id1050580_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Tmem86a_id2552408_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Mrpl19_id2261989_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Cdc42ep3_id5577780_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ndufb4_id5241422_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
1110007C09Rik_id4425616_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Mocos_id5670125_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Dus1l_id4018609_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Slc52a3_id847064_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Rhpn2_id2522257_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Nkd2_id4487550_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Wdr89_id4201123_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Lrpprc_id5590892_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Phykpl_id3847043_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Zfp493_id4472135_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Ptchd4_id5486398_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Zbtb8a_id1630475_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Irak3_id3700588_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Zfp819_id2543728_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Pck2_id4737370_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Pcdh1_id5703772_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Fam101b_id3908213_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Sgpp1_id4201286_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Hspa8_id3208123_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Kcnn1_id2965914_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Spred2_id3769103_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Tshz2_id890477_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Acss1_id843594_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Nphs2_id384824_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Arhgef5_id2164246_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Abhd17c_id2645639_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Cdcp1_id3409272_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Cisd1_id3581396_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Hoxb2_id3958685_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Smim3_id5757976_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Socs7_id3961207_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Nlgn1_id982921_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Susd4_id449923_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Zswim6_id4572766_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Zfp503_id4652828_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Pim3_id5118011_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Lace1_id3510061_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Lrrc3b_id4635973_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Cpped1_id5177046_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Aars_id3066336_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Prss50_id3379869_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Slc1a3_id4919615_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Rbm17_id500778_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Cd109_id3300227_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Cadm4_id2492585_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Gpr156_id5242053_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Cmtm4_id3049681_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Acsf2_id3954253_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Nfkbid_id2508402_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Oscp1_id1622319_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Rbm34_id3104231_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Sh3rf3_id3550886_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Tbcel_id3212157_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Galnt18_id2716596_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Mamdc2_id5882597_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Fbxl22_id3270912_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Mael_id408645_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Mroh1_id5086983_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Zfp770_id754414_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Prtg_id3286160_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Aard_id5025738_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Rab11fip4_id3917225_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Pld5_id434386_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Nwd2_id1845589_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Samd12_id5030415_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Arl4c_id214048_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Arap2_id1843354_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Tagln2_id424572_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Zfp365_id3573106_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Mapkapk3_id3370575_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Champ1_id2826164_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Tnrc6c_id4011171_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Dagla_id5850122_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Bahcc1_id4017212_FBXL19_ES_TAM_bg.bed_bg_sorted.bw
Mex3d_id3604301_FBXL19_ES_TAM_bg.bed_bg_sorted.bw


title: FBXL19fl_ES_TAM_rep2_CapC_set1


title: FBXL19fl_ES_TAM_rep4_CapC_set1


title: FBXL19fl_ES_UNT_rep3_CapC_set2

description:
processed data file:
Fli1_id3186524_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Mn1_id1964984_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Kif26b_id440003_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Dlk1_id4283906_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Spry1_id1010657_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Igdcc3_id3267532_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Col26a1_id2027715_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Samd14_id3955395_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Atoh8_id2237664_FBXL19_ES_UNT_bg.bed_bg_sorted.bw

source_name: mESCs_untreated control, CaptureC

value: 0 hr


title: FBXL19fl_ES_UNT_rep4_CapC_set2


title: MED13-13lfl_ES_UNT_rep3_CapC_set1

value: Med13/13lfl/fl; Rosa26::ERT2-Cre


title: FBXL19fl_RA_TAM_rep2_CapC_set2


title: FBXL19fl_ES_UNT_rep4_CapC_set1

description:
processed data file:
Tpm4_id2969160_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Megf10_id5749717_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Ckap2_id2847141_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Ccdc177_id4213506_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Ankrd6_id1387983_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Pdp2_id3050157_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Kdm7a_id2153561_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
AW146154_id2537634_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Slc47a2_id3871357_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Asic2_id3923197_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Tmco1_id411517_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Evi5l_id2802851_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Arrdc3_id4506220_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Cep126_id3124148_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
C77370_id6243560_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Lonrf1_id2881524_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Ermp1_id5897272_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Polr3a_id4659089_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Ccdc142_id2265006_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Stat5b_id3969874_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Tiam2_id5387471_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Ednrb_id4854605_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Syce1_id2788219_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Ppfia4_id331310_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
1500009L16Rik_id3612757_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Dnajc13_id3362998_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Adamtsl3_id2641148_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Pak3_id6344953_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
E030018B13Rik_id2596176_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Sema6d_id778751_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Inafm2_id765330_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Cabp1_id1973991_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Prdx3_id5973264_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Aplp1_id2508467_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Arg1_id3465762_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Rhob_id4035130_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Casp2_id2161600_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Cdh6_id4930340_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Cnn2_id3603335_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Col8a1_id5290658_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Epha5_id1896100_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Mpzl2_id3218449_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Fasn_id4018679_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Fzd7_id142589_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Fzd8_id5631876_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Gas1_id4452406_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Hoxb1_id3958722_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Hoxb5_id3958568_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Hpgd_id2929245_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Klf2_id2969645_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Lfng_id2036913_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Mapkapk2_id323408_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Mcm3_id47198_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Mmp15_id3027407_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Mmp2_id3020918_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Gadd45b_id3605594_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Pla2r1_id622128_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Ptprn_id180345_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Ptrf_id3970218_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
S100a10_id1149986_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Nkx1-2_id2768203_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Scd1_id5933791_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Supt4a_id3937444_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Tal2_id1439711_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Hnf1a_id1973455_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Ttf1_id545321_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Vipr2_id4301021_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Abcg1_id5455875_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Asic1_id5143940_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Capn2_id449358_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Cd24a_id3512611_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Cdh11_id3045509_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Chat,Slc18a3_id4678235_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
S1pr3_id4431509_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Efs_id4735760_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
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Pros1_id5303530_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
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C1ql1_id3975329_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
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Hebp1_id2394582_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
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Ntsr1_id917074_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
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Paqr4_id5438307_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
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Rexo2_id3226797_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Tomm7_id1746923_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Llph_id3700641_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Tma16_id2954862_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Mrps14_id394136_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Isoc1_id5753246_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Polr2e_id3603475_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Mrps25_id2287411_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Sorcs3_id5942915_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Uqcrfs1_id4380171_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Tril_id2189634_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Eef1g_id5846437_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Snrpd3_id3591800_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Map1lc3b_id3091625_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
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Dph2_id1601224_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Ufm1_id1050580_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Tmem86a_id2552408_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Mrpl19_id2261989_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Cdc42ep3_id5577780_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
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1110007C09Rik_id4425616_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Mocos_id5670125_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
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Irak3_id3700588_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Zfp819_id2543728_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Pck2_id4737370_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Pcdh1_id5703772_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Fam101b_id3908213_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Sgpp1_id4201286_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Hspa8_id3208123_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Kcnn1_id2965914_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Spred2_id3769103_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Tshz2_id890477_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Acss1_id843594_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Nphs2_id384824_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Arhgef5_id2164246_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Abhd17c_id2645639_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Cdcp1_id3409272_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Cisd1_id3581396_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Hoxb2_id3958685_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
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Nlgn1_id982921_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
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Zswim6_id4572766_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Zfp503_id4652828_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Pim3_id5118011_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Lace1_id3510061_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Lrrc3b_id4635973_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Cpped1_id5177046_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Aars_id3066336_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
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Slc1a3_id4919615_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Rbm17_id500778_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Cd109_id3300227_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Cadm4_id2492585_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
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Cmtm4_id3049681_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
Acsf2_id3954253_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
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Mamdc2_id5882597_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
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Dagla_id5850122_FBXL19_ES_UNT_bg.bed_bg_sorted.bw
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title: Dox_1: miR-26a_Dox_1

city: Dallas

first: Joshua

last: Mendell

state: TX

address: 6000 Harry Hines Blvd., NA6.200A

department: Molecular Biology

country: USA

institute: UT Southwestern Medical Center

description: Treated with 1mg/ml of doxycycline for 4 days in vitro

library_source: transcriptomic

data_processing:
Quality assessment of the RNA-seq data was performed using NGS QC Toolkit (v2.3.3). Reads with more than 30% of nucleotides with a Phred quality score of less than 20 were removed from further analysis.
Quality-filtered reads were aligned to the mouse reference genome GRCm38 (mm10) using Tophat2 (v2.0.12) with default settings.
Aligned reads were counted per gene using featureCount (v1.4.6).
Differential gene expression analysis was carried out using EdgeR (v3.8.6).
Fragments per kilobase million (FPKM) were obtained using Stringtie (v1.2.2).
Genome_build: GRCm38 (mm10)
Supplementary_files_format_and_content: Tab-delimited text files including gene ID and FPKM

molecule: total RNA

source_name: Cultured primary SVFs from WAT

growth_protocol: Primary wild-type and TKO SVFs were isolated and cultured to confluency prior to RNA isolation. miR-26a transgenic SVFs were grown to confluency in presence or absence of doxycycline (1mg/ml) for 4 days.

extract_protocol:
Total RNA was isolated from i) wild-type and miR-26-TKO (mR-26a-1-/-; miR-26a-2-/-; miR-26b-/-) primary SVFs or ii) miR-26a transgenic primary SVFs with and without doxycycline treatment using the miRNeasy Mini Kit (Qiagen) including an on-column DNAse I digestion step.
RNA-seq libraries were prepared using the TruSeq Stranded mRNA Library Prep Kit (Illumina) and sequenced using the 75 bp single-read protocol on a NextSeq 500 platform (Illumina).

treatment_protocol: miR-26a transgenic mice were cultured in vitro with or without doxycycline (1mg/ml) for 4 days in culture.

tag: strain

value: stromal vascular fraction

tag: genotype/variation

value: M2rtTA;eGFP.miR-26a +Doxycycline

tag: age

value: 6 weeks


title: Dox_3: miR-26a_Dox_3


title: Dox_2: miR-26a_Dox_2


title: FBXL19fl_ES_TAM_rep3_CapC_set2


title: FBXL19fl_ES_UNT_rep1_CapC_set2


title: CTL_1: miR-26a_CTL_1

description: No treatment


title: CTL_3: miR-26a_CTL_3

description: No treatment


title: CTL_2: miR-26a_CTL_2

description: No treatment


title: TKO_3: miR-26-TKO-3


title: TKO_1: miR-26-TKO-1


title: TKO_2: miR-26-TKO-2


title: FBXL19fl_ES_UNT_rep2_CapC_set2


title: WT_3: Wildtype 3

value: Wildtype


title: WT_2: Wildtype 2


title: WT_1: Wildtype 1


title: ShhGli3_input

city: Austin

first: Steven

last: Vokes

state: Texas

address: 2500 Speedway, Stop A4800

department: Department of Molecular Biosciences, Institute for Cellular & Molecular Biology

institute: The University of Texas at Austin

description: limbs were dissociated using 100ug/mL Liberase (Roche 05401119001) in PBS at 37 degrees for 6 minutes.

data_processing:
Base calling was done using Illumina bcl2fasq version 1.8.4 or version 2.17.1
Raw sequencing reads are mapped to mouse mm10 genome using Bowtie2 (version 2.2.5).
Peak calling was done using CisGenome with default parameters.
Genome_build: mm10
Supplementary_files_format_and_content: BedGraph files
Supplementary_files_format_and_content: txt files: peaks called by CisGenome

source_name: E10.5  forelimb bud

extract_protocol:
Limb buds were dissected and dissociated prior to fixation.
ChIP libraries were prepared with True microChIP library*** with 12 cycles  of library amplifications. Excess primers were removed from PCR reactions using AmpureXP beads (A63880) at a ratio of 0.8x beads.
DNA library- Diagenode True MicroChIP

tag: strain background

value: mixed

tag: tissue/chip rxn

value: single pair of limb buds

value: wild type


title: FBXL19fl_ES_UNT_rep3_CapC_set1


title: Shh_input


title: FBXL19fl_ES_UNT_rep2_CapC_set1


title: ShhGli3_1


title: Shh_2


title: WT_2


title: MED13-13lfl_ES_TAM_rep1_CapC_set1

description:
processed data file:
Tpm4_id2969160_MED13_ES_TAM_bg.bed_bg_sorted.bw
Megf10_id5749717_MED13_ES_TAM_bg.bed_bg_sorted.bw
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AW146154_id2537634_MED13_ES_TAM_bg.bed_bg_sorted.bw
Slc47a2_id3871357_MED13_ES_TAM_bg.bed_bg_sorted.bw
Asic2_id3923197_MED13_ES_TAM_bg.bed_bg_sorted.bw
Tmco1_id411517_MED13_ES_TAM_bg.bed_bg_sorted.bw
Evi5l_id2802851_MED13_ES_TAM_bg.bed_bg_sorted.bw
Arrdc3_id4506220_MED13_ES_TAM_bg.bed_bg_sorted.bw
Cep126_id3124148_MED13_ES_TAM_bg.bed_bg_sorted.bw
C77370_id6243560_MED13_ES_TAM_bg.bed_bg_sorted.bw
Lonrf1_id2881524_MED13_ES_TAM_bg.bed_bg_sorted.bw
Ermp1_id5897272_MED13_ES_TAM_bg.bed_bg_sorted.bw
Polr3a_id4659089_MED13_ES_TAM_bg.bed_bg_sorted.bw
Ccdc142_id2265006_MED13_ES_TAM_bg.bed_bg_sorted.bw
Stat5b_id3969874_MED13_ES_TAM_bg.bed_bg_sorted.bw
Tiam2_id5387471_MED13_ES_TAM_bg.bed_bg_sorted.bw
Ednrb_id4854605_MED13_ES_TAM_bg.bed_bg_sorted.bw
Syce1_id2788219_MED13_ES_TAM_bg.bed_bg_sorted.bw
Ppfia4_id331310_MED13_ES_TAM_bg.bed_bg_sorted.bw
1500009L16Rik_id3612757_MED13_ES_TAM_bg.bed_bg_sorted.bw
Dnajc13_id3362998_MED13_ES_TAM_bg.bed_bg_sorted.bw
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Pak3_id6344953_MED13_ES_TAM_bg.bed_bg_sorted.bw
E030018B13Rik_id2596176_MED13_ES_TAM_bg.bed_bg_sorted.bw
Sema6d_id778751_MED13_ES_TAM_bg.bed_bg_sorted.bw
Inafm2_id765330_MED13_ES_TAM_bg.bed_bg_sorted.bw
Cabp1_id1973991_MED13_ES_TAM_bg.bed_bg_sorted.bw
Prdx3_id5973264_MED13_ES_TAM_bg.bed_bg_sorted.bw
Aplp1_id2508467_MED13_ES_TAM_bg.bed_bg_sorted.bw
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Rhob_id4035130_MED13_ES_TAM_bg.bed_bg_sorted.bw
Casp2_id2161600_MED13_ES_TAM_bg.bed_bg_sorted.bw
Cdh6_id4930340_MED13_ES_TAM_bg.bed_bg_sorted.bw
Cnn2_id3603335_MED13_ES_TAM_bg.bed_bg_sorted.bw
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Epha5_id1896100_MED13_ES_TAM_bg.bed_bg_sorted.bw
Mpzl2_id3218449_MED13_ES_TAM_bg.bed_bg_sorted.bw
Fasn_id4018679_MED13_ES_TAM_bg.bed_bg_sorted.bw
Fzd7_id142589_MED13_ES_TAM_bg.bed_bg_sorted.bw
Fzd8_id5631876_MED13_ES_TAM_bg.bed_bg_sorted.bw
Gas1_id4452406_MED13_ES_TAM_bg.bed_bg_sorted.bw
Hoxb1_id3958722_MED13_ES_TAM_bg.bed_bg_sorted.bw
Hoxb5_id3958568_MED13_ES_TAM_bg.bed_bg_sorted.bw
Hpgd_id2929245_MED13_ES_TAM_bg.bed_bg_sorted.bw
Klf2_id2969645_MED13_ES_TAM_bg.bed_bg_sorted.bw
Lfng_id2036913_MED13_ES_TAM_bg.bed_bg_sorted.bw
Mapkapk2_id323408_MED13_ES_TAM_bg.bed_bg_sorted.bw
Mcm3_id47198_MED13_ES_TAM_bg.bed_bg_sorted.bw
Mmp15_id3027407_MED13_ES_TAM_bg.bed_bg_sorted.bw
Mmp2_id3020918_MED13_ES_TAM_bg.bed_bg_sorted.bw
Gadd45b_id3605594_MED13_ES_TAM_bg.bed_bg_sorted.bw
Pla2r1_id622128_MED13_ES_TAM_bg.bed_bg_sorted.bw
Ptprn_id180345_MED13_ES_TAM_bg.bed_bg_sorted.bw
Ptrf_id3970218_MED13_ES_TAM_bg.bed_bg_sorted.bw
S100a10_id1149986_MED13_ES_TAM_bg.bed_bg_sorted.bw
Nkx1-2_id2768203_MED13_ES_TAM_bg.bed_bg_sorted.bw
Scd1_id5933791_MED13_ES_TAM_bg.bed_bg_sorted.bw
Supt4a_id3937444_MED13_ES_TAM_bg.bed_bg_sorted.bw
Tal2_id1439711_MED13_ES_TAM_bg.bed_bg_sorted.bw
Hnf1a_id1973455_MED13_ES_TAM_bg.bed_bg_sorted.bw
Ttf1_id545321_MED13_ES_TAM_bg.bed_bg_sorted.bw
Vipr2_id4301021_MED13_ES_TAM_bg.bed_bg_sorted.bw
Abcg1_id5455875_MED13_ES_TAM_bg.bed_bg_sorted.bw
Asic1_id5143940_MED13_ES_TAM_bg.bed_bg_sorted.bw
Capn2_id449358_MED13_ES_TAM_bg.bed_bg_sorted.bw
Cd24a_id3512611_MED13_ES_TAM_bg.bed_bg_sorted.bw
Cdh11_id3045509_MED13_ES_TAM_bg.bed_bg_sorted.bw
Chat,Slc18a3_id4678235_MED13_ES_TAM_bg.bed_bg_sorted.bw
S1pr3_id4431509_MED13_ES_TAM_bg.bed_bg_sorted.bw
Efs_id4735760_MED13_ES_TAM_bg.bed_bg_sorted.bw
Ephb3_id5201786_MED13_ES_TAM_bg.bed_bg_sorted.bw
Fhl3_id1618914_MED13_ES_TAM_bg.bed_bg_sorted.bw
Gsto1_id5942000_MED13_ES_TAM_bg.bed_bg_sorted.bw
Hoxb3_id3958676_MED13_ES_TAM_bg.bed_bg_sorted.bw
Igfbp5_id174464_MED13_ES_TAM_bg.bed_bg_sorted.bw
Itga5_id5153214_MED13_ES_TAM_bg.bed_bg_sorted.bw
Lama3_id5639740_MED13_ES_TAM_bg.bed_bg_sorted.bw
Large_id2972265_MED13_ES_TAM_bg.bed_bg_sorted.bw
Ndufa4_id2086878_MED13_ES_TAM_bg.bed_bg_sorted.bw
Nfkbia_id4151479_MED13_ES_TAM_bg.bed_bg_sorted.bw
Numbl_id2500220_MED13_ES_TAM_bg.bed_bg_sorted.bw
Pou3f1_id1618825_MED13_ES_TAM_bg.bed_bg_sorted.bw
Prlr_id4923288_MED13_ES_TAM_bg.bed_bg_sorted.bw
Pros1_id5303530_MED13_ES_TAM_bg.bed_bg_sorted.bw
Ptprd_id1501257_MED13_ES_TAM_bg.bed_bg_sorted.bw
Scnn1g_id2741113_MED13_ES_TAM_bg.bed_bg_sorted.bw
St8sia1_id2413404_MED13_ES_TAM_bg.bed_bg_sorted.bw
Sox2_id1003349_MED13_ES_TAM_bg.bed_bg_sorted.bw
Tcea3_id1647459_MED13_ES_TAM_bg.bed_bg_sorted.bw
Tubb5_id5468158_MED13_ES_TAM_bg.bed_bg_sorted.bw
Ercc5_id104061_MED13_ES_TAM_bg.bed_bg_sorted.bw
Amfr_id3024072_MED13_ES_TAM_bg.bed_bg_sorted.bw
C1ql1_id3975329_MED13_ES_TAM_bg.bed_bg_sorted.bw
Creg1_id407574_MED13_ES_TAM_bg.bed_bg_sorted.bw
Twf2_id3367775_MED13_ES_TAM_bg.bed_bg_sorted.bw
St6galnac5_id1294639_MED13_ES_TAM_bg.bed_bg_sorted.bw
Asns_id2075943_MED13_ES_TAM_bg.bed_bg_sorted.bw
Fkbp9_id2196958_MED13_ES_TAM_bg.bed_bg_sorted.bw
Cpt1a_id5832120_MED13_ES_TAM_bg.bed_bg_sorted.bw
Frg1_id2894123_MED13_ES_TAM_bg.bed_bg_sorted.bw
Hebp1_id2394582_MED13_ES_TAM_bg.bed_bg_sorted.bw
Lrpap1_id1775334_MED13_ES_TAM_bg.bed_bg_sorted.bw
Atp5l_id3218128_MED13_ES_TAM_bg.bed_bg_sorted.bw
Tnfrsf19_id4750989_MED13_ES_TAM_bg.bed_bg_sorted.bw
Scly_id220349_MED13_ES_TAM_bg.bed_bg_sorted.bw
Gipc2_id1292782_MED13_ES_TAM_bg.bed_bg_sorted.bw
Insm1_id832241_MED13_ES_TAM_bg.bed_bg_sorted.bw
Ctnnal1_id1447659_MED13_ES_TAM_bg.bed_bg_sorted.bw
Ntsr1_id917074_MED13_ES_TAM_bg.bed_bg_sorted.bw
Slc1a4_id3770078_MED13_ES_TAM_bg.bed_bg_sorted.bw
Ppie_id1615141_MED13_ES_TAM_bg.bed_bg_sorted.bw
Htra1_id2764107_MED13_ES_TAM_bg.bed_bg_sorted.bw
Arl10_id4439192_MED13_ES_TAM_bg.bed_bg_sorted.bw
Angptl4_id5462755_MED13_ES_TAM_bg.bed_bg_sorted.bw
Egr4_id2270850_MED13_ES_TAM_bg.bed_bg_sorted.bw
Snrpb2_id824501_MED13_ES_TAM_bg.bed_bg_sorted.bw
Shank3_id5119599_MED13_ES_TAM_bg.bed_bg_sorted.bw
Isl1_id4592795_MED13_ES_TAM_bg.bed_bg_sorted.bw
Slc4a8_id5146726_MED13_ES_TAM_bg.bed_bg_sorted.bw
Foxj2_id2362399_MED13_ES_TAM_bg.bed_bg_sorted.bw
Paqr4_id5438307_MED13_ES_TAM_bg.bed_bg_sorted.bw
Tbc1d20_id847836_MED13_ES_TAM_bg.bed_bg_sorted.bw
Rexo2_id3226797_MED13_ES_TAM_bg.bed_bg_sorted.bw
Tomm7_id1746923_MED13_ES_TAM_bg.bed_bg_sorted.bw
Llph_id3700641_MED13_ES_TAM_bg.bed_bg_sorted.bw
Tma16_id2954862_MED13_ES_TAM_bg.bed_bg_sorted.bw
Mrps14_id394136_MED13_ES_TAM_bg.bed_bg_sorted.bw
Isoc1_id5753246_MED13_ES_TAM_bg.bed_bg_sorted.bw
Polr2e_id3603475_MED13_ES_TAM_bg.bed_bg_sorted.bw
Mrps25_id2287411_MED13_ES_TAM_bg.bed_bg_sorted.bw
Sorcs3_id5942915_MED13_ES_TAM_bg.bed_bg_sorted.bw
Uqcrfs1_id4380171_MED13_ES_TAM_bg.bed_bg_sorted.bw
Tril_id2189634_MED13_ES_TAM_bg.bed_bg_sorted.bw
Eef1g_id5846437_MED13_ES_TAM_bg.bed_bg_sorted.bw
Snrpd3_id3591800_MED13_ES_TAM_bg.bed_bg_sorted.bw
Map1lc3b_id3091625_MED13_ES_TAM_bg.bed_bg_sorted.bw
Pkp2_id5188447_MED13_ES_TAM_bg.bed_bg_sorted.bw
Dph2_id1601224_MED13_ES_TAM_bg.bed_bg_sorted.bw
Ufm1_id1050580_MED13_ES_TAM_bg.bed_bg_sorted.bw
Tmem86a_id2552408_MED13_ES_TAM_bg.bed_bg_sorted.bw
Mrpl19_id2261989_MED13_ES_TAM_bg.bed_bg_sorted.bw
Cdc42ep3_id5577780_MED13_ES_TAM_bg.bed_bg_sorted.bw
Ndufb4_id5241422_MED13_ES_TAM_bg.bed_bg_sorted.bw
1110007C09Rik_id4425616_MED13_ES_TAM_bg.bed_bg_sorted.bw
Mocos_id5670125_MED13_ES_TAM_bg.bed_bg_sorted.bw
Dus1l_id4018609_MED13_ES_TAM_bg.bed_bg_sorted.bw
Slc52a3_id847064_MED13_ES_TAM_bg.bed_bg_sorted.bw
Rhpn2_id2522257_MED13_ES_TAM_bg.bed_bg_sorted.bw
Nkd2_id4487550_MED13_ES_TAM_bg.bed_bg_sorted.bw
Wdr89_id4201123_MED13_ES_TAM_bg.bed_bg_sorted.bw
Lrpprc_id5590892_MED13_ES_TAM_bg.bed_bg_sorted.bw
Phykpl_id3847043_MED13_ES_TAM_bg.bed_bg_sorted.bw
Zfp493_id4472135_MED13_ES_TAM_bg.bed_bg_sorted.bw
Ptchd4_id5486398_MED13_ES_TAM_bg.bed_bg_sorted.bw
Zbtb8a_id1630475_MED13_ES_TAM_bg.bed_bg_sorted.bw
Irak3_id3700588_MED13_ES_TAM_bg.bed_bg_sorted.bw
Zfp819_id2543728_MED13_ES_TAM_bg.bed_bg_sorted.bw
Pck2_id4737370_MED13_ES_TAM_bg.bed_bg_sorted.bw
Pcdh1_id5703772_MED13_ES_TAM_bg.bed_bg_sorted.bw
Fam101b_id3908213_MED13_ES_TAM_bg.bed_bg_sorted.bw
Sgpp1_id4201286_MED13_ES_TAM_bg.bed_bg_sorted.bw
Hspa8_id3208123_MED13_ES_TAM_bg.bed_bg_sorted.bw
Kcnn1_id2965914_MED13_ES_TAM_bg.bed_bg_sorted.bw
Spred2_id3769103_MED13_ES_TAM_bg.bed_bg_sorted.bw
Tshz2_id890477_MED13_ES_TAM_bg.bed_bg_sorted.bw
Acss1_id843594_MED13_ES_TAM_bg.bed_bg_sorted.bw
Nphs2_id384824_MED13_ES_TAM_bg.bed_bg_sorted.bw
Arhgef5_id2164246_MED13_ES_TAM_bg.bed_bg_sorted.bw
Abhd17c_id2645639_MED13_ES_TAM_bg.bed_bg_sorted.bw
Cdcp1_id3409272_MED13_ES_TAM_bg.bed_bg_sorted.bw
Cisd1_id3581396_MED13_ES_TAM_bg.bed_bg_sorted.bw
Hoxb2_id3958685_MED13_ES_TAM_bg.bed_bg_sorted.bw
Smim3_id5757976_MED13_ES_TAM_bg.bed_bg_sorted.bw
Socs7_id3961207_MED13_ES_TAM_bg.bed_bg_sorted.bw
Nlgn1_id982921_MED13_ES_TAM_bg.bed_bg_sorted.bw
Susd4_id449923_MED13_ES_TAM_bg.bed_bg_sorted.bw
Zswim6_id4572766_MED13_ES_TAM_bg.bed_bg_sorted.bw
Zfp503_id4652828_MED13_ES_TAM_bg.bed_bg_sorted.bw
Pim3_id5118011_MED13_ES_TAM_bg.bed_bg_sorted.bw
Lace1_id3510061_MED13_ES_TAM_bg.bed_bg_sorted.bw
Lrrc3b_id4635973_MED13_ES_TAM_bg.bed_bg_sorted.bw
Cpped1_id5177046_MED13_ES_TAM_bg.bed_bg_sorted.bw
Aars_id3066336_MED13_ES_TAM_bg.bed_bg_sorted.bw
Prss50_id3379869_MED13_ES_TAM_bg.bed_bg_sorted.bw
Slc1a3_id4919615_MED13_ES_TAM_bg.bed_bg_sorted.bw
Rbm17_id500778_MED13_ES_TAM_bg.bed_bg_sorted.bw
Cd109_id3300227_MED13_ES_TAM_bg.bed_bg_sorted.bw
Cadm4_id2492585_MED13_ES_TAM_bg.bed_bg_sorted.bw
Gpr156_id5242053_MED13_ES_TAM_bg.bed_bg_sorted.bw
Cmtm4_id3049681_MED13_ES_TAM_bg.bed_bg_sorted.bw
Acsf2_id3954253_MED13_ES_TAM_bg.bed_bg_sorted.bw
Nfkbid_id2508402_MED13_ES_TAM_bg.bed_bg_sorted.bw
Oscp1_id1622319_MED13_ES_TAM_bg.bed_bg_sorted.bw
Rbm34_id3104231_MED13_ES_TAM_bg.bed_bg_sorted.bw
Sh3rf3_id3550886_MED13_ES_TAM_bg.bed_bg_sorted.bw
Tbcel_id3212157_MED13_ES_TAM_bg.bed_bg_sorted.bw
Galnt18_id2716596_MED13_ES_TAM_bg.bed_bg_sorted.bw
Mamdc2_id5882597_MED13_ES_TAM_bg.bed_bg_sorted.bw
Fbxl22_id3270912_MED13_ES_TAM_bg.bed_bg_sorted.bw
Mael_id408645_MED13_ES_TAM_bg.bed_bg_sorted.bw
Mroh1_id5086983_MED13_ES_TAM_bg.bed_bg_sorted.bw
Zfp770_id754414_MED13_ES_TAM_bg.bed_bg_sorted.bw
Prtg_id3286160_MED13_ES_TAM_bg.bed_bg_sorted.bw
Aard_id5025738_MED13_ES_TAM_bg.bed_bg_sorted.bw
Rab11fip4_id3917225_MED13_ES_TAM_bg.bed_bg_sorted.bw
Pld5_id434386_MED13_ES_TAM_bg.bed_bg_sorted.bw
Nwd2_id1845589_MED13_ES_TAM_bg.bed_bg_sorted.bw
Samd12_id5030415_MED13_ES_TAM_bg.bed_bg_sorted.bw
Arl4c_id214048_MED13_ES_TAM_bg.bed_bg_sorted.bw
Arap2_id1843354_MED13_ES_TAM_bg.bed_bg_sorted.bw
Tagln2_id424572_MED13_ES_TAM_bg.bed_bg_sorted.bw
Zfp365_id3573106_MED13_ES_TAM_bg.bed_bg_sorted.bw
Mapkapk3_id3370575_MED13_ES_TAM_bg.bed_bg_sorted.bw
Champ1_id2826164_MED13_ES_TAM_bg.bed_bg_sorted.bw
Tnrc6c_id4011171_MED13_ES_TAM_bg.bed_bg_sorted.bw
Dagla_id5850122_MED13_ES_TAM_bg.bed_bg_sorted.bw
Bahcc1_id4017212_MED13_ES_TAM_bg.bed_bg_sorted.bw
Mex3d_id3604301_MED13_ES_TAM_bg.bed_bg_sorted.bw


title: WT_input


title: Shh_1


title: E10_Gli3_input

extract_protocol:
Limb buds were dissected and dissociated prior to fixation.
ChIP libraries were prepared with NEBNext Ultra II Library Prep Kit series with 15 cycles of library amplifications. Excess primers were removed from PCR reactions using AmpureXP beads (A63880) at a ratio of 0.8x beads.
DNA library- NEBNext Ultra II Library Prep Kit

value: 2 litters of limb buds


title: WT_1


title: MLN.cr.T6

city: Valbonne - Sophia-Antipolis

first: Kevin

last: Lebrigand

address: 660 route des lucioles

country: France

institute: IPMC/CNRS

description:
T6_GM_CR
c-myc Igh transgenic mouse.
processed data file: kallisto_tpm.txt

data_processing:
Reads quality control using fastQC and Fastq-scren.
Kallisto v0.43 quantification versus cdna and ncrna from Ensembl release 91 of mm10 build.
Genome_build: mm10 (GRCm38)
Supplementary_files_format_and_content: kallisto_tpm.txt: Matrix text file with tpm estimates; rows are transcripts, columns are samples.

source_name: Mesenteric lymph node

extract_protocol:
Trizol extraction.
500ng of total RNA were depleted of ribosomal RNA, ligated, reverse transcribed and amplified (12 cycles) with the reagents from the TruSeq Stranded Total RNA kit (Illumina). Libraries were quantified with the Bioanalyzer 2100 Kit (Agilent) and Qubit (Thermo Fisher). 4nM of libraries were then diluted and denatured according to the Illumina recommendations. Paired-end 2x150bp reads were sequenced on an Illumina Nextseq 500 sequencer.

value: Malignant B cells

value: cr


title: E10_Gli3_1


title: E10_Gli3_2


title: FBXL19fl_RA_TAM_rep1_CapC_set1

value: Mouse embryonic stem cells

value: Fbxl19-CxxCfl/fl; Rosa26::ERT2-Cre

value: tamoxifen (OHT), retinoic acid (RA)


title: PLN.co.T2

description:
T2_GP_CO
c-myc Igh transgenic mouse.
processed data file: kallisto_tpm.txt

source_name: Peripheric lymph node

value: co


title: FBXL19fl_RA_UNT_rep1_CapC_set1

value: retinoic acid (RA)

value: 72 hr


title: Lung.hv.T39

description:
T39_POU_CO
c-myc Igh transgenic mouse.
processed data file: kallisto_tpm.txt

source_name: Lung

value: hv


title: ShhGli3_2


title: MLN.cr.T1

description:
T1_GM_CR
c-myc Igh transgenic mouse.
processed data file: kallisto_tpm.txt


title: MLN.cr.T35

description:
T35_GM1_CR
c-myc Igh transgenic mouse.
processed data file: kallisto_tpm.txt


title: PLN.hv.T8

description:
T8_Cou_HV
c-myc Igh transgenic mouse.
processed data file: kallisto_tpm.txt


title: Lung.hv.T7

description:
T7_POU_HV
c-myc Igh transgenic mouse.
processed data file: kallisto_tpm.txt


title: PLN.hv.T15

description:
T15_GP_HV
c-myc Igh transgenic mouse.
processed data file: kallisto_tpm.txt


title: Lung.cr.T14

description:
T14poumonCr
c-myc Igh transgenic mouse.
processed data file: kallisto_tpm.txt


title: Lung.cr.T9

description:
T9poumonCr
c-myc Igh transgenic mouse.
processed data file: kallisto_tpm.txt


title: MED13-13lfl_ES_UNT_rep1_CapC_set1

description:
processed data file:
Tpm4_id2969160_MED13_ES_UNT_bg.bed_bg_sorted.bw
Megf10_id5749717_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ckap2_id2847141_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ccdc177_id4213506_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ankrd6_id1387983_MED13_ES_UNT_bg.bed_bg_sorted.bw
Pdp2_id3050157_MED13_ES_UNT_bg.bed_bg_sorted.bw
Kdm7a_id2153561_MED13_ES_UNT_bg.bed_bg_sorted.bw
AW146154_id2537634_MED13_ES_UNT_bg.bed_bg_sorted.bw
Slc47a2_id3871357_MED13_ES_UNT_bg.bed_bg_sorted.bw
Asic2_id3923197_MED13_ES_UNT_bg.bed_bg_sorted.bw
Tmco1_id411517_MED13_ES_UNT_bg.bed_bg_sorted.bw
Evi5l_id2802851_MED13_ES_UNT_bg.bed_bg_sorted.bw
Arrdc3_id4506220_MED13_ES_UNT_bg.bed_bg_sorted.bw
Cep126_id3124148_MED13_ES_UNT_bg.bed_bg_sorted.bw
C77370_id6243560_MED13_ES_UNT_bg.bed_bg_sorted.bw
Lonrf1_id2881524_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ermp1_id5897272_MED13_ES_UNT_bg.bed_bg_sorted.bw
Polr3a_id4659089_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ccdc142_id2265006_MED13_ES_UNT_bg.bed_bg_sorted.bw
Stat5b_id3969874_MED13_ES_UNT_bg.bed_bg_sorted.bw
Tiam2_id5387471_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ednrb_id4854605_MED13_ES_UNT_bg.bed_bg_sorted.bw
Syce1_id2788219_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ppfia4_id331310_MED13_ES_UNT_bg.bed_bg_sorted.bw
1500009L16Rik_id3612757_MED13_ES_UNT_bg.bed_bg_sorted.bw
Dnajc13_id3362998_MED13_ES_UNT_bg.bed_bg_sorted.bw
Adamtsl3_id2641148_MED13_ES_UNT_bg.bed_bg_sorted.bw
Pak3_id6344953_MED13_ES_UNT_bg.bed_bg_sorted.bw
E030018B13Rik_id2596176_MED13_ES_UNT_bg.bed_bg_sorted.bw
Sema6d_id778751_MED13_ES_UNT_bg.bed_bg_sorted.bw
Inafm2_id765330_MED13_ES_UNT_bg.bed_bg_sorted.bw
Cabp1_id1973991_MED13_ES_UNT_bg.bed_bg_sorted.bw
Prdx3_id5973264_MED13_ES_UNT_bg.bed_bg_sorted.bw
Aplp1_id2508467_MED13_ES_UNT_bg.bed_bg_sorted.bw
Arg1_id3465762_MED13_ES_UNT_bg.bed_bg_sorted.bw
Rhob_id4035130_MED13_ES_UNT_bg.bed_bg_sorted.bw
Casp2_id2161600_MED13_ES_UNT_bg.bed_bg_sorted.bw
Cdh6_id4930340_MED13_ES_UNT_bg.bed_bg_sorted.bw
Cnn2_id3603335_MED13_ES_UNT_bg.bed_bg_sorted.bw
Col8a1_id5290658_MED13_ES_UNT_bg.bed_bg_sorted.bw
Epha5_id1896100_MED13_ES_UNT_bg.bed_bg_sorted.bw
Mpzl2_id3218449_MED13_ES_UNT_bg.bed_bg_sorted.bw
Fasn_id4018679_MED13_ES_UNT_bg.bed_bg_sorted.bw
Fzd7_id142589_MED13_ES_UNT_bg.bed_bg_sorted.bw
Fzd8_id5631876_MED13_ES_UNT_bg.bed_bg_sorted.bw
Gas1_id4452406_MED13_ES_UNT_bg.bed_bg_sorted.bw
Hoxb1_id3958722_MED13_ES_UNT_bg.bed_bg_sorted.bw
Hoxb5_id3958568_MED13_ES_UNT_bg.bed_bg_sorted.bw
Hpgd_id2929245_MED13_ES_UNT_bg.bed_bg_sorted.bw
Klf2_id2969645_MED13_ES_UNT_bg.bed_bg_sorted.bw
Lfng_id2036913_MED13_ES_UNT_bg.bed_bg_sorted.bw
Mapkapk2_id323408_MED13_ES_UNT_bg.bed_bg_sorted.bw
Mcm3_id47198_MED13_ES_UNT_bg.bed_bg_sorted.bw
Mmp15_id3027407_MED13_ES_UNT_bg.bed_bg_sorted.bw
Mmp2_id3020918_MED13_ES_UNT_bg.bed_bg_sorted.bw
Gadd45b_id3605594_MED13_ES_UNT_bg.bed_bg_sorted.bw
Pla2r1_id622128_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ptprn_id180345_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ptrf_id3970218_MED13_ES_UNT_bg.bed_bg_sorted.bw
S100a10_id1149986_MED13_ES_UNT_bg.bed_bg_sorted.bw
Nkx1-2_id2768203_MED13_ES_UNT_bg.bed_bg_sorted.bw
Scd1_id5933791_MED13_ES_UNT_bg.bed_bg_sorted.bw
Supt4a_id3937444_MED13_ES_UNT_bg.bed_bg_sorted.bw
Tal2_id1439711_MED13_ES_UNT_bg.bed_bg_sorted.bw
Hnf1a_id1973455_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ttf1_id545321_MED13_ES_UNT_bg.bed_bg_sorted.bw
Vipr2_id4301021_MED13_ES_UNT_bg.bed_bg_sorted.bw
Abcg1_id5455875_MED13_ES_UNT_bg.bed_bg_sorted.bw
Asic1_id5143940_MED13_ES_UNT_bg.bed_bg_sorted.bw
Capn2_id449358_MED13_ES_UNT_bg.bed_bg_sorted.bw
Cd24a_id3512611_MED13_ES_UNT_bg.bed_bg_sorted.bw
Cdh11_id3045509_MED13_ES_UNT_bg.bed_bg_sorted.bw
Chat,Slc18a3_id4678235_MED13_ES_UNT_bg.bed_bg_sorted.bw
S1pr3_id4431509_MED13_ES_UNT_bg.bed_bg_sorted.bw
Efs_id4735760_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ephb3_id5201786_MED13_ES_UNT_bg.bed_bg_sorted.bw
Fhl3_id1618914_MED13_ES_UNT_bg.bed_bg_sorted.bw
Gsto1_id5942000_MED13_ES_UNT_bg.bed_bg_sorted.bw
Hoxb3_id3958676_MED13_ES_UNT_bg.bed_bg_sorted.bw
Igfbp5_id174464_MED13_ES_UNT_bg.bed_bg_sorted.bw
Itga5_id5153214_MED13_ES_UNT_bg.bed_bg_sorted.bw
Lama3_id5639740_MED13_ES_UNT_bg.bed_bg_sorted.bw
Large_id2972265_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ndufa4_id2086878_MED13_ES_UNT_bg.bed_bg_sorted.bw
Nfkbia_id4151479_MED13_ES_UNT_bg.bed_bg_sorted.bw
Numbl_id2500220_MED13_ES_UNT_bg.bed_bg_sorted.bw
Pou3f1_id1618825_MED13_ES_UNT_bg.bed_bg_sorted.bw
Prlr_id4923288_MED13_ES_UNT_bg.bed_bg_sorted.bw
Pros1_id5303530_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ptprd_id1501257_MED13_ES_UNT_bg.bed_bg_sorted.bw
Scnn1g_id2741113_MED13_ES_UNT_bg.bed_bg_sorted.bw
St8sia1_id2413404_MED13_ES_UNT_bg.bed_bg_sorted.bw
Sox2_id1003349_MED13_ES_UNT_bg.bed_bg_sorted.bw
Tcea3_id1647459_MED13_ES_UNT_bg.bed_bg_sorted.bw
Tubb5_id5468158_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ercc5_id104061_MED13_ES_UNT_bg.bed_bg_sorted.bw
Amfr_id3024072_MED13_ES_UNT_bg.bed_bg_sorted.bw
C1ql1_id3975329_MED13_ES_UNT_bg.bed_bg_sorted.bw
Creg1_id407574_MED13_ES_UNT_bg.bed_bg_sorted.bw
Twf2_id3367775_MED13_ES_UNT_bg.bed_bg_sorted.bw
St6galnac5_id1294639_MED13_ES_UNT_bg.bed_bg_sorted.bw
Asns_id2075943_MED13_ES_UNT_bg.bed_bg_sorted.bw
Fkbp9_id2196958_MED13_ES_UNT_bg.bed_bg_sorted.bw
Cpt1a_id5832120_MED13_ES_UNT_bg.bed_bg_sorted.bw
Frg1_id2894123_MED13_ES_UNT_bg.bed_bg_sorted.bw
Hebp1_id2394582_MED13_ES_UNT_bg.bed_bg_sorted.bw
Lrpap1_id1775334_MED13_ES_UNT_bg.bed_bg_sorted.bw
Atp5l_id3218128_MED13_ES_UNT_bg.bed_bg_sorted.bw
Tnfrsf19_id4750989_MED13_ES_UNT_bg.bed_bg_sorted.bw
Scly_id220349_MED13_ES_UNT_bg.bed_bg_sorted.bw
Gipc2_id1292782_MED13_ES_UNT_bg.bed_bg_sorted.bw
Insm1_id832241_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ctnnal1_id1447659_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ntsr1_id917074_MED13_ES_UNT_bg.bed_bg_sorted.bw
Slc1a4_id3770078_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ppie_id1615141_MED13_ES_UNT_bg.bed_bg_sorted.bw
Htra1_id2764107_MED13_ES_UNT_bg.bed_bg_sorted.bw
Arl10_id4439192_MED13_ES_UNT_bg.bed_bg_sorted.bw
Angptl4_id5462755_MED13_ES_UNT_bg.bed_bg_sorted.bw
Egr4_id2270850_MED13_ES_UNT_bg.bed_bg_sorted.bw
Snrpb2_id824501_MED13_ES_UNT_bg.bed_bg_sorted.bw
Shank3_id5119599_MED13_ES_UNT_bg.bed_bg_sorted.bw
Isl1_id4592795_MED13_ES_UNT_bg.bed_bg_sorted.bw
Slc4a8_id5146726_MED13_ES_UNT_bg.bed_bg_sorted.bw
Foxj2_id2362399_MED13_ES_UNT_bg.bed_bg_sorted.bw
Paqr4_id5438307_MED13_ES_UNT_bg.bed_bg_sorted.bw
Tbc1d20_id847836_MED13_ES_UNT_bg.bed_bg_sorted.bw
Rexo2_id3226797_MED13_ES_UNT_bg.bed_bg_sorted.bw
Tomm7_id1746923_MED13_ES_UNT_bg.bed_bg_sorted.bw
Llph_id3700641_MED13_ES_UNT_bg.bed_bg_sorted.bw
Tma16_id2954862_MED13_ES_UNT_bg.bed_bg_sorted.bw
Mrps14_id394136_MED13_ES_UNT_bg.bed_bg_sorted.bw
Isoc1_id5753246_MED13_ES_UNT_bg.bed_bg_sorted.bw
Polr2e_id3603475_MED13_ES_UNT_bg.bed_bg_sorted.bw
Mrps25_id2287411_MED13_ES_UNT_bg.bed_bg_sorted.bw
Sorcs3_id5942915_MED13_ES_UNT_bg.bed_bg_sorted.bw
Uqcrfs1_id4380171_MED13_ES_UNT_bg.bed_bg_sorted.bw
Tril_id2189634_MED13_ES_UNT_bg.bed_bg_sorted.bw
Eef1g_id5846437_MED13_ES_UNT_bg.bed_bg_sorted.bw
Snrpd3_id3591800_MED13_ES_UNT_bg.bed_bg_sorted.bw
Map1lc3b_id3091625_MED13_ES_UNT_bg.bed_bg_sorted.bw
Pkp2_id5188447_MED13_ES_UNT_bg.bed_bg_sorted.bw
Dph2_id1601224_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ufm1_id1050580_MED13_ES_UNT_bg.bed_bg_sorted.bw
Tmem86a_id2552408_MED13_ES_UNT_bg.bed_bg_sorted.bw
Mrpl19_id2261989_MED13_ES_UNT_bg.bed_bg_sorted.bw
Cdc42ep3_id5577780_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ndufb4_id5241422_MED13_ES_UNT_bg.bed_bg_sorted.bw
1110007C09Rik_id4425616_MED13_ES_UNT_bg.bed_bg_sorted.bw
Mocos_id5670125_MED13_ES_UNT_bg.bed_bg_sorted.bw
Dus1l_id4018609_MED13_ES_UNT_bg.bed_bg_sorted.bw
Slc52a3_id847064_MED13_ES_UNT_bg.bed_bg_sorted.bw
Rhpn2_id2522257_MED13_ES_UNT_bg.bed_bg_sorted.bw
Nkd2_id4487550_MED13_ES_UNT_bg.bed_bg_sorted.bw
Wdr89_id4201123_MED13_ES_UNT_bg.bed_bg_sorted.bw
Lrpprc_id5590892_MED13_ES_UNT_bg.bed_bg_sorted.bw
Phykpl_id3847043_MED13_ES_UNT_bg.bed_bg_sorted.bw
Zfp493_id4472135_MED13_ES_UNT_bg.bed_bg_sorted.bw
Ptchd4_id5486398_MED13_ES_UNT_bg.bed_bg_sorted.bw
Zbtb8a_id1630475_MED13_ES_UNT_bg.bed_bg_sorted.bw
Irak3_id3700588_MED13_ES_UNT_bg.bed_bg_sorted.bw
Zfp819_id2543728_MED13_ES_UNT_bg.bed_bg_sorted.bw
Pck2_id4737370_MED13_ES_UNT_bg.bed_bg_sorted.bw
Pcdh1_id5703772_MED13_ES_UNT_bg.bed_bg_sorted.bw
Fam101b_id3908213_MED13_ES_UNT_bg.bed_bg_sorted.bw
Sgpp1_id4201286_MED13_ES_UNT_bg.bed_bg_sorted.bw
Hspa8_id3208123_MED13_ES_UNT_bg.bed_bg_sorted.bw
Kcnn1_id2965914_MED13_ES_UNT_bg.bed_bg_sorted.bw
Spred2_id3769103_MED13_ES_UNT_bg.bed_bg_sorted.bw
Tshz2_id890477_MED13_ES_UNT_bg.bed_bg_sorted.bw
Acss1_id843594_MED13_ES_UNT_bg.bed_bg_sorted.bw
Nphs2_id384824_MED13_ES_UNT_bg.bed_bg_sorted.bw
Arhgef5_id2164246_MED13_ES_UNT_bg.bed_bg_sorted.bw
Abhd17c_id2645639_MED13_ES_UNT_bg.bed_bg_sorted.bw
Cdcp1_id3409272_MED13_ES_UNT_bg.bed_bg_sorted.bw
Cisd1_id3581396_MED13_ES_UNT_bg.bed_bg_sorted.bw
Hoxb2_id3958685_MED13_ES_UNT_bg.bed_bg_sorted.bw
Smim3_id5757976_MED13_ES_UNT_bg.bed_bg_sorted.bw
Socs7_id3961207_MED13_ES_UNT_bg.bed_bg_sorted.bw
Nlgn1_id982921_MED13_ES_UNT_bg.bed_bg_sorted.bw
Susd4_id449923_MED13_ES_UNT_bg.bed_bg_sorted.bw
Zswim6_id4572766_MED13_ES_UNT_bg.bed_bg_sorted.bw
Zfp503_id4652828_MED13_ES_UNT_bg.bed_bg_sorted.bw
Pim3_id5118011_MED13_ES_UNT_bg.bed_bg_sorted.bw
Lace1_id3510061_MED13_ES_UNT_bg.bed_bg_sorted.bw
Lrrc3b_id4635973_MED13_ES_UNT_bg.bed_bg_sorted.bw
Cpped1_id5177046_MED13_ES_UNT_bg.bed_bg_sorted.bw
Aars_id3066336_MED13_ES_UNT_bg.bed_bg_sorted.bw
Prss50_id3379869_MED13_ES_UNT_bg.bed_bg_sorted.bw
Slc1a3_id4919615_MED13_ES_UNT_bg.bed_bg_sorted.bw
Rbm17_id500778_MED13_ES_UNT_bg.bed_bg_sorted.bw
Cd109_id3300227_MED13_ES_UNT_bg.bed_bg_sorted.bw
Cadm4_id2492585_MED13_ES_UNT_bg.bed_bg_sorted.bw
Gpr156_id5242053_MED13_ES_UNT_bg.bed_bg_sorted.bw
Cmtm4_id3049681_MED13_ES_UNT_bg.bed_bg_sorted.bw
Acsf2_id3954253_MED13_ES_UNT_bg.bed_bg_sorted.bw
Nfkbid_id2508402_MED13_ES_UNT_bg.bed_bg_sorted.bw
Oscp1_id1622319_MED13_ES_UNT_bg.bed_bg_sorted.bw
Rbm34_id3104231_MED13_ES_UNT_bg.bed_bg_sorted.bw
Sh3rf3_id3550886_MED13_ES_UNT_bg.bed_bg_sorted.bw
Tbcel_id3212157_MED13_ES_UNT_bg.bed_bg_sorted.bw
Galnt18_id2716596_MED13_ES_UNT_bg.bed_bg_sorted.bw
Mamdc2_id5882597_MED13_ES_UNT_bg.bed_bg_sorted.bw
Fbxl22_id3270912_MED13_ES_UNT_bg.bed_bg_sorted.bw
Mael_id408645_MED13_ES_UNT_bg.bed_bg_sorted.bw
Mroh1_id5086983_MED13_ES_UNT_bg.bed_bg_sorted.bw
Zfp770_id754414_MED13_ES_UNT_bg.bed_bg_sorted.bw
Prtg_id3286160_MED13_ES_UNT_bg.bed_bg_sorted.bw
Aard_id5025738_MED13_ES_UNT_bg.bed_bg_sorted.bw
Rab11fip4_id3917225_MED13_ES_UNT_bg.bed_bg_sorted.bw
Pld5_id434386_MED13_ES_UNT_bg.bed_bg_sorted.bw
Nwd2_id1845589_MED13_ES_UNT_bg.bed_bg_sorted.bw
Samd12_id5030415_MED13_ES_UNT_bg.bed_bg_sorted.bw
Arl4c_id214048_MED13_ES_UNT_bg.bed_bg_sorted.bw
Arap2_id1843354_MED13_ES_UNT_bg.bed_bg_sorted.bw
Tagln2_id424572_MED13_ES_UNT_bg.bed_bg_sorted.bw
Zfp365_id3573106_MED13_ES_UNT_bg.bed_bg_sorted.bw
Mapkapk3_id3370575_MED13_ES_UNT_bg.bed_bg_sorted.bw
Champ1_id2826164_MED13_ES_UNT_bg.bed_bg_sorted.bw
Tnrc6c_id4011171_MED13_ES_UNT_bg.bed_bg_sorted.bw
Dagla_id5850122_MED13_ES_UNT_bg.bed_bg_sorted.bw
Bahcc1_id4017212_MED13_ES_UNT_bg.bed_bg_sorted.bw
Mex3d_id3604301_MED13_ES_UNT_bg.bed_bg_sorted.bw

value: Med13/13lfl/fl; Rosa26::ERT2-Cre

value: 0 hr


title: Lung.co.T30

description:
T30poumonCo
c-myc Igh transgenic mouse.
processed data file: kallisto_tpm.txt


title: Lung.hv.T14

description:
T14poumonHV
c-myc Igh transgenic mouse.
processed data file: kallisto_tpm.txt


title: Lung.co.T9

description:
T9poumonCo
c-myc Igh transgenic mouse.
processed data file: kallisto_tpm.txt


title: MLN.cr.T20

description:
T20_GM1_CR
c-myc Igh transgenic mouse.
processed data file: kallisto_tpm.txt