title: Cervical cancer_CC140

description: Cervical cancer_microdissected, squamous cell carcinoma

source_name: Cervical cancer_CC140

tag: Cervical cancer, squamous cell carcinoma, microdissected, age 41, stage IIIB, HPV 16


title: Normal cervix_03-5611

status: Public on Jun 04 2008

type: RNA

city: New York

first: Murty

last: Vundavalli

state: NY

address: 1130 St Nicholas Ave

department: Pathology

country: USA

institute: Columbia University Medical Center

description: Normal Cervix Epithelium, microdissected

hyb_protocol: Affymetrix

scan_protocol: Affymetrix

data_processing: GCOS

label: Biotin

molecule: total RNA

organism: Homo sapiens

source_name: Normal cervix_03-5611

label_protocol: Affymetrix

extract_protocol: TRIzol

tag: Normal cervix epithelium, microdissected, Age 44


title: Normal cervix epithelium_03-3505

description: Normal cervix, microdissected epithelium

label: biotin

source_name: Normal cervix epithelium_03-3505

tag: Normal cervix epithelium, microdissected, Age 43


title: Normal cervix epithelium_03-4216

source_name: Normal cervix epithelium_03-4216

tag: Normal cervix, microdissected, Age 42


title: Normal cervix epithelium_03-4986

source_name: Normal cervix epithelium_03-4986

tag: Normal cervix epithelium, microdissected, Age 42


title: Normal cervix epithelium_CaCx4

description: Columbia University Medical Center

source_name: Normal cervix epithelium_CaCx4

tag: Microdissected normal cervical epithelium, Age 38


title: Normal cervix epithelium_03-4508

description: Normal cervix epithelium

source_name: Normal cervix epithelium_03-4508

tag: Normal cervix epiethelium, microdissected, Age 48


title: Normal cervix, commercial_BioChain

description: BioChain

source_name: Normal cervix, commercial_BioChain

tag: Total RNA from cervix


title: Normal cervix epithelium_CaCx5

description: Columbia University Medical Center

source_name: Normal cervix epithelium_CaCx5

tag: Normal cervical epithelium, microdissected, Age 30


title: Normal cervix epithelium_CaCX3

description: Microdissected_Normal Cervical epithelium

source_name: Normal cervix epithelium_CaCX3

tag: Normal cervix, age 27 years, micordissected squamous epitheilium


title: Normal cervix, commercial_Stratagene

description: Stratagene

source_name: Normal cervix, commercial_Stratagene

tag: Toral RNA, commercial


title: Normal cervix, commercial_Ambion

description: Commercial RNA from cervix

source_name: Normal cervix, commercial_Ambion

tag: Commercial RNA from normal cervix


title: squamous cell carcinoma of the cervix SCC__UMC-9T

status: Public on Dec 11 2007

city: Ann Arbor

first: Rork

last: Kuick

state: MI

address: University of Michigan, SPH II, 1415 Washington Heights, Room M2533

institute: University of Michigan

hyb_protocol: standard Affymetrix procedures

scan_protocol: standard Affymetrix procedures

data_processing: Ann Arbor quantile-normalized trimmed-mean method

source_name: invasive squamous cell carcinoma of the cervix

label_protocol: 20-100 ng of total RNA was processed to produce biotinylated cRNA targets, using two rounds of T7-base RNA amplification with the Arcturus RiboAmp kit (KIT0201).

extract_protocol: Total RNA was extracted from 1000-5000 laser capture microdissected cells using the Arcturus PicoPure RNA isolation Kit (KIT0202).

tag: frank carcinoma


title: squamous cell carcinoma of the cervix SCC__CS-196T


title: squamous cell carcinoma of the cervix SCC__CS-87


title: squamous cell carcinoma of the cervix SCC__C-33T


title: squamous cell carcinoma of the cervix SCC__UMC-8T


title: squamous cell carcinoma of the cervix SCC__UMC-5T


title: squamous cell carcinoma of the cervix SCC__CS-16T


title: squamous cell carcinoma of the cervix SCC__CS-48


title: squamous cell carcinoma of the cervix SCC__CS-188T


title: squamous cell carcinoma of the cervix SCC__C-31T


title: squamous cell carcinoma of the cervix SCC__UMC-4T


title: squamous cell carcinoma of the cervix SCC__CS-80T


title: squamous cell carcinoma of the cervix SCC__C-9T


title: squamous cell carcinoma of the cervix SCC__C-3T


title: squamous cell carcinoma of the cervix SCC__C-20T


title: squamous cell carcinoma of the cervix SCC__C-2T-3


title: squamous cell carcinoma of the cervix SCC__C-27T


title: high grade squamous intraepithelial lesion of the cervix HSIL__H7_A

tag: intraepithelial lesion


title: squamous cell carcinoma of the cervix SCC__UMC-11T


title: squamous cell carcinoma of the cervix SCC__C-30T


title: high grade squamous intraepithelial lesion of the cervix HSIL__H4_A


title: squamous cell carcinoma of the cervix SCC__C-16T


title: high grade squamous intraepithelial lesion of the cervix HSIL__H3-2_A


title: high grade squamous intraepithelial lesion of the cervix HSIL__H9_A


title: high grade squamous intraepithelial lesion of the cervix HSIL__H10_A


title: high grade squamous intraepithelial lesion of the cervix HSIL__H1_A


title: high grade squamous intraepithelial lesion of the cervix HSIL__H2_A


title: Normal Cervix NC__N4

description: Normal Cervix NC__N4

source_name: normal squamous cervical epitheilium

tag: normal


title: Normal Cervix NC__UMC-7N

description: Normal Cervix NC__UMC-7N


title: squamous cell carcinoma of the cervix SCC__C-19T


title: Normal Cervix NC__C-9N

description: Normal Cervix NC__C-9N


title: Normal Cervix NC__CN9

description: Normal Cervix NC__CN9


title: Normal Cervix NC__C-6N

description: Normal Cervix NC__C-6N


title: Normal Cervix NC__C-3N

description: Normal Cervix NC__C-3N


title: Normal Cervix NC__C-2N

description: Normal Cervix NC__C-2N


title: Normal Cervix NC__C-12N

description: Normal Cervix NC__C-12N


title: CN001

status: Public on May 15 2007

city: Madison

first: Paul

last: Ahlquist

state: WI

address: 1525 Linden Dr.

department: Oncology

institute: University of Wisconsin-Madison

description: Head and neck cancer

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station

scan_protocol: GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.

data_processing: The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.

source_name: Cervical normal

label_protocol: Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit  according to manufacturer's instructions.

growth_protocol: Sample was harvested without further growth

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.

tag: Case

value: Cervical normal

tag: Anatomical sites

value: Cervix

tag: gender

value: Female

tag: age

tag: Tumor Stage


title: CN022

description: Head and neck cancer


title: Normal Cervix NC__CN55

description: Normal Cervix NC__CN55


title: CC600

description: Head and neck cancer

source_name: Cervical cancer

value: Cervical cancer


title: CN018

description: Head and neck cancer


title: Normal Cervix NC__N2

description: Normal Cervix NC__N2


title: CN530

description: Head and neck cancer


title: CC553

description: Head and neck cancer

value: IB


title: CN243

description: Head and neck cancer


title: CN407

description: Head and neck cancer


title: CC515

description: Head and neck cancer


title: CC519

description: Head and neck cancer


title: CC701

description: Head and neck cancer


title: CN206

description: Head and neck cancer


title: CC300

description: Head and neck cancer


title: CC507

description: Head and neck cancer

value: IIIB


title: CC304

description: Head and neck cancer


title: CC243

description: Head and neck cancer


title: CN543

description: Head and neck cancer


title: CC237

description: Head and neck cancer


title: CC437

description: Head and neck cancer


title: CC233

description: Head and neck cancer


title: CC225

description: Head and neck cancer

value: IV


title: CC034B

description: Head and neck cancer

value: II/III


title: CC205

description: Head and neck cancer


title: CC029

description: Head and neck cancer


title: CC034A

description: Head and neck cancer


title: CC028

description: Head and neck cancer


title: CC068

description: Head and neck cancer


title: CC010

description: Head and neck cancer

value: II