title: Patient_1_R_Tm

tag: batch

tag: gender

tag: age at diagnosis

tag: smoker

value: Tongue + FOM SCC

tag: treatment

value: bilta ND, mandibulotomy with resection of tongue & FOM, free forearm flap

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_1_Q_Nr

status: Public on Feb 07 2020

type: RNA

city: Toronto

first: Igor

last: Jurisica

state: Ontario

address: 60 Leonard Avenue

department: Krembil Research Institute

country: Canada

institute: University Health Network

hyb_protocol: As described in Reis et al. 2011 [PMID: 21549012]

scan_protocol: According to the manufacturer’s instructions (NanoStrings Technologies, Seattle, WA)

data_processing: Raw data extracted from the RCC files were assembled into matrix

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: Normal

label_protocol: Using 400 ng total RNA, gene transcrpts levels were assayed using Nanostring nCounter assay kits by direct digital detection following the manufacturer’s guidelines (NanoString Technologies, Seattle, WA).

extract_protocol: RNA from FFPE samples was isolated using the RecoverAll Total Nucleic Acid Isolation kit (Ambion/Life Technologies, Carlsbad, CA, USA), following our previously reported protocol with modifications to improve RNA yield [PMID: 23835716]. RNA was stored at -80ºC until RNA extraction

tag: patient id

value: F

value: never

tag: drinker

value: Y

tag: pathology report

value: Medial margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

value: moderate

tag: rtx

tag: qtx

value: N

tag: recurrence status

value: no recurrence

tag: date of diagnosis

tag: date of 1st recurrence


title: BRx-221-2--10-13-15

type: SRA

city: Boston

first: Ben

middle: S.

last: Wittner

state: MA

address: 149 13th Street

department: Center for Cancer Research

country: USA

institute: Massachusetts General Hospital

library_source: transcriptomic

data_processing:
Trimmomatic was used to crop reads to length 50 and to remove the TruSeq3-PE-2 Illumina adapters
The paired-end reads were then aligned using tophat2 and bowtie1 with the no-novel-juncs argument set with human genome version hg19 and transcriptome defined by the hg19 genes.gtf table from http://genome.ucsc.edu
Reads that did not align or aligned to multiple locations were discarded.
The number of reads aligning to each gene was then determined using htseq-count.
Samples that had fewer than 100,000 reads were discarded. Samples for which PTPRC expression was greater than 10 reads-per-million were deemed possible white blood cells and were discarded.
Genome_build: hg19
Supplementary_files_format_and_content: The readCounts.xls file gives the read counts described above for each sample (columns) and gene (rows).

source_name: candidate CTC

extract_protocol:
Single CTCs were isolated from fresh whole blood following leukocyte depletion using the microfluidic CTC-iChip as described in PMID 23552373. Single cells were individually micromanipulated using a 10 μm transfer tip on an Eppendorf TransferMan NK 2 micromanipulator, transferred into PCR tubes containing RNA protective lysis buffer, and flash frozen in liquid nitrogen.
Clontech SMARTer Ultra Low Input Kit for RNA v3 for cDNA synthesis and the Nextera XT kit for library construction

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: Patient_1_Q_Tm

source_name: Tumour

tag: batch

tag: gender

tag: age at diagnosis

tag: smoker

tag: treatment

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_20_2A_Tm

tag: patient id

tag: drinker

tag: pathology report

value: Buccal alveolar SCC

tag: tumor size at maximum dimension

tag: Stage

tag: grade

value: bilat ND, mandibulotomy with resection FOM & inner mandible, parotidectomy, free forearm flap

tag: rtx

tag: qtx

tag: recurrence status

value: probable recurrence


title: Patient_1_O_Tm

tag: batch

tag: gender

tag: date of diagnosis

tag: date of 1st recurrence


title: BRx-221-1--10-13-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: RBG18112_GM-CSF_Day7_ME-Parental

city: Shanghai

first: Xiaonan

last: Wang

address: 227 Chongqing South Road

department: School of Public Health

country: China

institute: Shanghai Jiao Tong University School of Medicine

data_processing:
Raw reads were aligned to Mus musculus genome (GRCm38.81) using G-SNAP (version 2015-09-29) with the following parameters: –B 5 –n 1 –N 1 –Q. HTSeq-count (version 0.6.0) was run to assign mapped reads to Ensembl genes (GRCm38.81).
Genome_build: GRCm38.81
Supplementary_files_format_and_content: HT-Seq counts / gene counts (.txt)

organism: Mus musculus

source_name: Hoxb8 Cell line

growth_protocol: Conditionally immortalised early hematopoietic progenitor cells (Hoxb8-FL cells) (Redecke et al., 2013) were cultured in RPMI 1640 medium (Sigma-R8758) supplemented with 10% Fetal Bovine Serum (FBS) (HyCloneTM GE Healthcare), 5% Flt3L conditional medium, 1% Penicillin/Streptomycin (Sigma-P0781), 1% L-Glutamine (Sigma-G7513), 0.1% 2-Mercaptoethanol (50mM stock)(Gibco®), 0.001% β-estradiol (10mM stock) at 37 ̊C and 5% CO2.

extract_protocol:
GFP positive and DAPI negative cells were FACS sorted into individual wells of a 96 well plates containing lysis buffer and processed using Smart-Seq2 protocol as previously described (Picelli et al., 2014).
Pooled libraries were run on the Illumina Hi-Seq 4000.
Libraries were prepared using the Illumina Nextera XT Libraries were prepared using the Illumina Nextera XT DNA preparation kit.

tag: treatment

value: GM-CSF

tag: day

tag: condition

value: ME-Parental


title: BRx-233-2-10-13-15

value: fail


title: Patient_19_2Q_Tm

tag: patient id

value: M

tag: age at diagnosis

tag: smoker

value: current

tag: drinker

tag: pathology report

value: Tongue SCC

tag: tumor size at maximum dimension

tag: Stage

value: well

value: bilat ND, mandibulotomy with glossectomy, free ALT flap

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_1_O_Nr

tag: batch

tag: gender

value: F

value: never

value: Y

value: Normal margin

tag: grade

value: bilta ND, mandibulotomy with resection of tongue & FOM, free forearm flap

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence


title: BRx-213-3--09-16-15

tag: patient

tag: clinical hormone receptor

value: HR-

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression

value: pass


title: RBG18100_GM-CSF_Day7_ME-Parental

tag: treatment

tag: day

tag: condition


title: RBG18124_GM-CSF_Day7_ME-Parental


title: Patient_1_P_Tm

tag: patient id

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

value: Tongue + FOM SCC

tag: tumor size at maximum dimension

tag: Stage

value: moderate

value: N

value: no recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_1_P_Nr

tag: batch

tag: gender

value: Medial margin

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence


title: Patient_19_2N_Nr

tag: patient id

value: M

tag: age at diagnosis

tag: smoker

value: Posterior margin

tag: treatment


title: Patient_19_2L_Nr

value: current

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage


title: RBG18088_GM-CSF_Day7_ME-Parental

value: GM-CSF

tag: day

tag: condition

value: ME-Parental


title: BRx-233-1--09-16-15

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression

value: fail


title: Patient_19_2K_Nr

tag: batch

tag: gender

value: Y

value: Anterior margin

tag: grade

value: well

value: bilat ND, mandibulotomy with glossectomy, free ALT flap

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: BRx-213-2--09-16-15

value: HR-

value: pass


title: RBG18064_GM-CSF_Day7_ME-Parental

tag: treatment

tag: day

tag: condition


title: Patient_19_2J_Tm

tag: patient id

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

value: Tongue SCC

tag: tumor size at maximum dimension

tag: Stage

tag: date of 1st recurrence


title: Patient_19_2H_Tm

tag: batch

tag: gender

tag: grade

tag: rtx

value: N

tag: qtx

tag: recurrence status


title: Reanalysis Brx-213-2--08-26-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_19_2F_Nr

tag: patient id

tag: age at diagnosis

tag: smoker

value: Anterior mucosal margin

tag: treatment

value: no recurrence

tag: date of diagnosis

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: RBG18052_ME-Parental

value: Untreated

tag: day

tag: batch

tag: condition


title: BRx-213-1--09-16-15

tag: patient


title: Patient_19_2E_Nr

tag: gender

value: M

tag: drinker

tag: pathology report

value: Lateral posterior margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: date of 1st recurrence


title: Patient_19_2B_Nr

tag: patient id

tag: age at diagnosis

tag: smoker

value: current

value: Posterior margin

tag: treatment

tag: date of diagnosis

tag: date of 2nd recurrence

tag: date of 3rd recurrence


title: RBG18040_ME-Parental

tag: day

tag: batch

tag: condition

value: ME-Parental


title: BRx-213-1--08-26-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

value: fail

tag: ptprc expression


title: Patient_19_2A_Dys

source_name: Dysplasia

tag: gender

tag: drinker

value: Y

tag: pathology report

value: Medial margin (Exclude this sample)

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: last follow-up

tag: date of death


title: RBG18028_ME-Parental

tag: treatment

tag: day

tag: batch

tag: condition


title: Patient_18_5G_Tm

tag: patient id

tag: age at diagnosis

tag: smoker

value: FOM SCC

value: moderate

value: bilat ND, composite resection FOM & tongue, local flap

value: local recurrence; distant (lung) mets

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence


title: Patient_18_5D_Tm

tag: gender

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade


title: BRx-212-4--08-25-15

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: Reanalysis Brx-213-3--08-26-15

value: HR-


title: RBG18016_ME-Parental

tag: treatment

tag: day

tag: batch

tag: condition


title: Patient_18_5C_Tm

tag: patient id

tag: age at diagnosis

tag: smoker

tag: rtx

value: N

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: last follow-up

tag: date of death


title: BRx-212-3--08-25-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads


title: Patient_18_5D_Nr

tag: batch

tag: gender

tag: drinker

tag: pathology report

value: Posterior FOM margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment

tag: date of 3rd recurrence


title: Patient_18_5C_Nr

tag: patient id

value: M

tag: age at diagnosis

tag: smoker

value: Medial FOM margin

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence


title: BRx-212-1--08-25-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_18_5A_Nr

tag: batch

tag: gender

value: current

tag: drinker

tag: pathology report

value: Anterior gingiva margin

tag: tumor size at maximum dimension

tag: Stage

tag: date of 2nd recurrence

tag: last follow-up

tag: date of death


title: RBG17992_ME-Parental

tag: treatment

value: Untreated

tag: day

tag: condition

value: ME-Parental


title: RBG18004_ME-Parental


title: Patient_19_2C_Tm

tag: patient id

tag: age at diagnosis

tag: smoker

value: Y

value: Tongue SCC

tag: grade

value: well

value: bilat ND, mandibulotomy with glossectomy, free ALT flap

tag: rtx

tag: qtx

tag: recurrence status

value: no recurrence

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 3rd recurrence


title: Patient_17_E_Nr

tag: batch

tag: gender

value: F

value: never

tag: drinker

tag: pathology report

value: Posterior end of specimen

tag: tumor size at maximum dimension

tag: Stage

value: poor

value: transoral resection of tongue

value: local recurrence


title: Patient_17_D_Tm

value: N

tag: treatment

tag: date of 2nd recurrence

tag: last follow-up

tag: date of death


title: BRx-206-4--01-15-16

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: RBG17968_ME-Parental

tag: day

tag: condition


title: BRx-206-3--01-15-16


title: Patient_17_B_Tm

tag: batch

tag: patient id

tag: age at diagnosis

tag: smoker

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 3rd recurrence


title: Patient_17_A_Nr_1

tag: gender

tag: drinker

tag: pathology report

value: Normal

tag: tumor size at maximum dimension

tag: Stage

tag: treatment

tag: date of 2nd recurrence

tag: last follow-up

tag: date of death


title: Patient_17_A_Nr_2

tag: batch

tag: patient id

tag: age at diagnosis

tag: smoker


title: Patient_17_A_Nr

value: Anterior end of specimen

tag: grade

tag: rtx

tag: qtx

tag: recurrence status


title: BRx-206-2--10-23-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_16_E_Tm

tag: gender

value: M

value: current

tag: drinker

tag: pathology report

value: FOM SCC

tag: tumor size at maximum dimension

tag: Stage

tag: treatment

value: bilat ND, transoral resection FOM

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 3rd recurrence


title: RBG18147_GM-CSF_Day7_ME-Parental

value: GM-CSF

tag: day

tag: batch

tag: condition

value: ME-Parental


title: BRx-206-2--01-15-16

tag: patient


title: BRx-212-2--08-25-15

tag: clinical hormone receptor


title: RBG18135_GM-CSF_Day7_ME-Parental


title: Patient_17_C_Tm

tag: patient id

value: F

tag: age at diagnosis

tag: smoker

value: Tongue SCC

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: date of 2nd recurrence

tag: last follow-up

tag: date of death


title: Patient_16_D_Nr

tag: gender

tag: drinker

value: Y

tag: pathology report

value: Anterior margin

tag: tumor size at maximum dimension

tag: Stage

value: well

tag: treatment

value: no recurrence

tag: date of diagnosis

tag: date of 1st recurrence


title: Patient_15_F_Nr

tag: batch

tag: patient id

tag: age at diagnosis

value: never

value: Inferior margin

value: moderate

value: partial glossectomy

value: N

tag: date of 3rd recurrence


title: Patient_17_C_Nr

tag: smoker

value: Normal

tag: grade

value: poor

value: transoral resection of tongue

tag: rtx

tag: qtx

value: local recurrence


title: Patient_15_E_Tm

value: M

value: FOM SCC

tag: recurrence status

tag: date of 2nd recurrence

tag: last follow-up

tag: date of death


title: BRx-206-1--01-15-16

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: RBG18087_GM-CSF_Day7_ME-Parental

tag: treatment

value: GM-CSF

tag: day

tag: batch

tag: condition

value: ME-Parental


title: BRx-194-5--08-03-15

value: fail


title: Patient_15_D_Tm

tag: patient id

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

value: Y

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

value: no recurrence

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 3rd recurrence


title: BRx-194-4--08-03-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads


title: Patient_14_Z_Tm

tag: batch

value: current

value: Tongue and FOM SCC Alveolar tumor

tag: grade

tag: treatment

value: bilat ND, mandibulectomy with resection of FOM, free fibula flap

tag: rtx

tag: qtx

tag: recurrence status

tag: date of 2nd recurrence

tag: last follow-up

tag: date of death


title: RBG18075_GM-CSF_Day7_ME-Parental

tag: day

tag: condition


title: Patient_16_F_Nr

tag: patient id

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

value: Posterior margin

tag: tumor size at maximum dimension

tag: Stage

value: well

value: bilat ND, transoral resection FOM

value: N

tag: date of diagnosis

tag: date of 1st recurrence


title: RBG18111_GM-CSF_Day7_ME-Parental

tag: treatment

tag: batch


title: RBG18099_GM-CSF_Day7_ME-Parental


title: Patient_14_Z_Nr

value: Deep and medial margins

tag: grade

value: moderate

tag: rtx

tag: qtx

tag: recurrence status

tag: date of 2nd recurrence

tag: date of 3rd recurrence


title: Patient_15_B_Tm

tag: patient id

tag: gender

value: M

value: never

value: FOM SCC

value: partial glossectomy

tag: last follow-up

tag: date of death


title: BRx-194-4--04-21-15

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: Patient_14_Y_Tm

tag: age at diagnosis

tag: smoker

tag: drinker

value: Y

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: treatment

tag: date of diagnosis

tag: date of 1st recurrence


title: RBG18123_GM-CSF_Day7_ME-Parental

value: GM-CSF

tag: day

tag: batch

tag: condition

value: ME-Parental


title: RBG18063_GM-CSF_Day7_ME-Parental


title: Patient_15_A_Tm

tag: patient id

tag: gender

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

value: no recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: BRx-194-3--08-03-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression

value: fail


title: Patient_14_W_Tm

tag: batch

tag: age at diagnosis

tag: smoker

value: current

tag: drinker

tag: pathology report

value: Tongue and FOM SCC Alveolar tumor

tag: tumor size at maximum dimension

tag: Stage

tag: treatment

value: bilat ND, mandibulectomy with resection of FOM, free fibula flap

tag: date of diagnosis

tag: date of 1st recurrence


title: Patient_14_F_Nr

tag: patient id

tag: gender

value: Posterior margin

tag: grade

tag: rtx

tag: qtx

value: N

tag: recurrence status

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: BRx-194-3--04-21-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_14_H_Nr

tag: batch

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

value: Alveolar mucosa buccal surphace

tag: tumor size at maximum dimension

tag: Stage

value: moderate

tag: treatment

tag: date of death


title: RBG18051_ME-Parental

value: Untreated

tag: day

tag: condition


title: Patient_14_D_Tm

tag: patient id

tag: gender

value: M

value: Deep and medial margins

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: RBG18039_ME-Parental

tag: batch


title: BRx-206-1--10-23-15

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_14_C_Tm

tag: patient id

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: treatment

tag: date of death


title: BRx-194-2--08-03-15

value: pass


title: RBG18027_ME-Parental

tag: day

tag: condition


title: Patient_14_A_Tm

tag: batch

tag: gender

value: Y

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: Patient_15_C_Tm

tag: patient id

tag: age at diagnosis

tag: smoker

value: never

tag: drinker

tag: pathology report

value: FOM SCC

tag: tumor size at maximum dimension

value: partial glossectomy


title: BRx-194-1--08-18-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_14_B_Tm

tag: batch

tag: gender

tag: Stage

tag: grade

tag: treatment

tag: rtx

tag: qtx

tag: recurrence status

value: no recurrence

tag: date of death


title: BRx-194-1--08-03-15


title: Patient_13_H_Tm

tag: patient id

tag: age at diagnosis

tag: smoker

value: current

tag: drinker

value: well

value: left ND, transoral resection FOM

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: Patient_13_F_Tm

tag: batch

tag: gender

tag: pathology report

tag: tumor size at maximum dimension


title: RBG17991_ME-Parental

tag: treatment

tag: day

tag: condition

value: ME-Parental


title: Patient_13_G_Tm

tag: Stage

tag: grade

tag: rtx

value: N

tag: qtx

tag: recurrence status

tag: date of death


title: RBG18015_ME-Parental


title: Patient_13_G_Nr

tag: patient id

tag: age at diagnosis

tag: smoker

tag: drinker

value: Normal

tag: date of diagnosis

tag: date of 1st recurrence


title: Patient_13_D_Nr

tag: batch

tag: gender

tag: pathology report

value: Anterior margin

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: BRx-194-1--06-09-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: BRx-194-1--04-21-15


title: Patient_13_E_Nr

tag: patient id

value: Posterior margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment

tag: rtx

tag: qtx

tag: recurrence status

tag: date of death


title: BRx-193-1--07-21-15


title: Patient_12_R_Tm

tag: batch

tag: gender

value: F

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

value: Tongue SCC

value: right ND, mandibulotomy with glossecotmy, free forearm flap

value: local recurrence

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence


title: Patient_12_S_Dys

tag: patient id

value: anterior to sections P and Q (exclude)

tag: tumor size at maximum dimension

tag: date of 3rd recurrence

tag: last follow-up


title: RBG17967_ME-Parental

tag: treatment

value: Untreated

tag: day

tag: condition


title: BRx-189-2--11-06-15

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: Patient_12_R_Nr

tag: batch

tag: gender

tag: age at diagnosis

tag: smoker

value: never

tag: drinker

tag: Stage

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: date of death


title: RBG18146_GM-CSF_Day7_Parental

tag: treatment

value: GM-CSF

tag: day

tag: condition

value: Parental


title: Patient_12_Q_Tm

tag: patient id

tag: pathology report

tag: tumor size at maximum dimension

value: well

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: RBG18003_ME-Parental

tag: batch

value: ME-Parental


title: BRx-189-1--11-06-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: RBG18134_GM-CSF_Day7_Parental

tag: treatment


title: Patient_12_Q_Nr

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

value: N

value: Medial margin

tag: Stage

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: date of death


title: RBG17979_ME-Parental

tag: day

tag: batch

tag: condition


title: BRx-188-1--07-21-15

tag: patient

value: fail


title: BRx-189-1--10-15-15

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads


title: RBG18122_GM-CSF_Day7_Parental

tag: treatment


title: Patient_12_S_Tm

tag: patient id

tag: gender

tag: age at diagnosis

tag: pathology report

tag: tumor size at maximum dimension

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: Patient_12_S_Nr

tag: batch

tag: smoker

tag: drinker

value: Normal

tag: Stage

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: date of death


title: Patient_12_P_Tm

tag: patient id

tag: gender

value: F

tag: age at diagnosis

tag: treatment


title: Patient_11_O_Tm

value: M

value: current

value: Y

tag: pathology report

value: FOM mandible SCC

tag: tumor size at maximum dimension

value: moderate

value: bilat ND, mandibulectomy with resection of oral ca, free fibula flap

value: no recurrence

tag: date of diagnosis

tag: date of 1st recurrence


title: Patient_11_O_Nr

tag: batch

value: Mid posterior margin

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: Patient_11_S_Tm

tag: smoker

tag: drinker

tag: Stage

tag: grade


title: Patient_12_O_Tm

value: never

value: Tongue SCC

value: right ND, mandibulotomy with glossecotmy, free forearm flap

tag: rtx

tag: qtx

tag: recurrence status

value: local recurrence

tag: date of death


title: RBG18098_GM-CSF_Day7_Parental

tag: treatment

value: GM-CSF

tag: day

tag: condition

value: Parental


title: Patient_11_M_Nr

tag: patient id

tag: gender

tag: age at diagnosis

tag: pathology report

value: Right anterior margin

tag: tumor size at maximum dimension

value: N

tag: date of diagnosis


title: Reanalysis Brx-180-1--07-02-15

tag: patient

tag: clinical hormone receptor

value: HR-

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: Patient_11_L_Tm

tag: batch

value: M

tag: smoker

value: current

tag: drinker

tag: Stage

tag: grade

tag: rtx

tag: qtx

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: Reanalysis Brx-180-1--06-12-15

value: fail


title: RBG18086_GM-CSF_Day7_Parental

tag: treatment

tag: day

tag: condition


title: Patient_11_L_Nr

tag: patient id

tag: gender

tag: age at diagnosis

value: Y

tag: pathology report

value: Mid anterior margin

tag: tumor size at maximum dimension

value: moderate

tag: recurrence status

tag: date of diagnosis

tag: date of death


title: Patient_11_K_Tm

tag: batch

tag: smoker

tag: drinker

value: FOM mandible SCC

tag: Stage

tag: grade

value: bilat ND, mandibulectomy with resection of oral ca, free fibula flap

tag: rtx

value: no recurrence


title: Reanalysis Brx-172-3--07-07-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_11_J_Nr

tag: patient id

tag: gender

tag: age at diagnosis

value: Left lateral margin

tag: treatment

tag: qtx

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: RBG17980_ME-Parental

value: Untreated

tag: day

tag: batch

tag: condition

value: ME-Parental


title: RBG18074_GM-CSF_Day7_Parental

value: GM-CSF

value: Parental


title: Patient_10_T_Tm

value: F

tag: smoker

value: never

tag: drinker

value: N

tag: pathology report

value: Tongue + Mandible  SCC

tag: tumor size at maximum dimension

tag: Stage

tag: grade

value: bilat ND, mandibulectomy with resection oral ca, free fibula flap

tag: rtx

tag: recurrence status

value: local recurrence

tag: date of diagnosis

tag: date of death


title: Patient_10_S_Tm

tag: patient id

tag: gender

tag: age at diagnosis

tag: treatment

tag: qtx

tag: date of 1st recurrence


title: RBG18110_GM-CSF_Day7_Parental

tag: day

tag: batch

tag: condition


title: RBG18062_GM-CSF_Day7_Parental


title: Reanalysis Brx-172-2--08-25-15

tag: patient

tag: clinical hormone receptor

value: HR-

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: RBG18038_Parental


title: Patient_10_S_Nr

tag: smoker

tag: drinker

tag: pathology report

value: Medial superior margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

value: moderate

tag: rtx

tag: recurrence status

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: BRx-172-2-08-04-15

value: fail


title: Patient_10_P_Nr

tag: batch

tag: patient id

tag: gender

tag: age at diagnosis

value: Posterior margin

tag: treatment

tag: qtx

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of death


title: Reanalysis Brx-172-2--07-07-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: BRx-172-2--06-25-15


title: Patient_10_L_Nr

tag: smoker

tag: drinker

tag: pathology report

value: Anterior superior FOM margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: rtx

tag: recurrence status

tag: date of 2nd recurrence


title: RBG18014_Parental

tag: treatment

value: Untreated

tag: day

tag: batch

tag: condition


title: Patient_10_L_Tm

tag: patient id

tag: gender

tag: age at diagnosis

tag: qtx

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: RBG18026_Parental


title: Reanalysis Brx-172-1--09-09-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_10_J_Tm

tag: smoker

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment

tag: rtx

tag: recurrence status

tag: date of 2nd recurrence


title: Patient_10_H_Nr

tag: batch

tag: patient id

tag: gender

tag: age at diagnosis

value: Deep margin

tag: qtx

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: Patient_10_I_Nr

tag: smoker

tag: drinker

tag: pathology report

value: Posterior tongue base margin

tag: date of death


title: Patient_10_N_Nr

value: Anterior deep FOM margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment


title: Patient_10_K_Tm

tag: batch

value: F

tag: rtx

tag: recurrence status

tag: date of 2nd recurrence


title: Patient_10_G_Tm

tag: patient id

tag: gender

tag: age at diagnosis

value: never

tag: qtx


title: Reanalysis Brx-172-1--08-25-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: RBG17990_Parental

tag: day

tag: condition

value: Parental


title: RBG18002_Parental


title: Patient_10_G_Nr

tag: smoker

tag: drinker

value: N

tag: pathology report

value: Lateral margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Reanalysis Brx-172-1--08-18-15

tag: patient

tag: clinical hormone receptor


title: RBG17978_Parental

tag: treatment

tag: batch


title: Patient_10_F_Tm

tag: patient id

tag: gender

tag: age at diagnosis

value: Tongue + Mandible  SCC

value: bilat ND, mandibulectomy with resection oral ca, free fibula flap

tag: rtx

tag: qtx

tag: recurrence status

value: local recurrence

tag: date of 2nd recurrence


title: Patient_10_E_Tm

tag: smoker

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade


title: RBG17966_Parental

tag: day

tag: condition


title: Patient_10_E_Nr

value: Superior margin

tag: treatment

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Reanalysis Brx-172-1-08-04-15

tag: patient

tag: clinical hormone receptor

value: HR-

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: BRx-172-1--07-07-15

value: fail


title: Reanalysis Brx-172-1--06-25-15


title: RBG18145_GM-CSF_Day7_Parental

value: GM-CSF

tag: batch


title: RBG18133_GM-CSF_Day7_Parental


title: Reanalysis Brx-172-1--02-01-15


title: RBG18109_GM-CSF_Day7_Parental


title: RBG18121_GM-CSF_Day7_Parental


title: RBG18097_GM-CSF_Day7_Parental


title: BRx-164-1--06-25-15

value: HR+


title: Reanalysis Brx-16-4--09-09-15


title: Reanalysis Brx-16-3--09-09-15


title: Patient_9_W_Nr

tag: patient id

tag: gender

value: M

tag: age at diagnosis

tag: smoker

tag: drinker

value: Y

tag: pathology report

value: Anterior margn

tag: tumor size at maximum dimension

value: well

value: left ND, partial glossectomy, free forearm flap

tag: rtx

tag: qtx

tag: recurrence status

value: no recurrence

tag: date of 2nd recurrence


title: Patient_8_F_Nr

value: never

value: Anterior margin

tag: Stage

tag: grade

tag: treatment

value: lateral rhinotomy approach, left maxillectomy

value: N

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_8_E_Tm

tag: batch

tag: patient id

tag: gender

tag: age at diagnosis

value: Maxillary SCC


title: Patient_8_E_Nr

tag: smoker

tag: drinker

tag: pathology report

value: Posterior margin

tag: tumor size at maximum dimension


title: Patient_9_X_Nr

value: Inferior FOM margin

tag: rtx

tag: qtx

tag: recurrence status

tag: date of 2nd recurrence


title: Patient_9_W_Tm

value: Tongue SCC

tag: Stage

tag: grade

tag: treatment

tag: date of diagnosis


title: RBG18085_GM-CSF_Day7_Parental

tag: day

tag: condition

value: Parental


title: Patient_8_D_Tm

tag: batch

tag: patient id

tag: date of 1st recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_8_D_Nr

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

value: Superior margin

tag: tumor size at maximum dimension


title: BRx-16-2--09-09-15

tag: patient

tag: clinical hormone receptor

value: HR-

tag: clinical her2

tag: number uniquely mapped reads

value: fail

tag: ptprc expression

value: pass


title: Patient_7_L_Tm

tag: batch

value: F

tag: Stage

tag: grade

tag: treatment

value: left ND, mandibulotomy with resection of tongue, free forearm flap

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 2nd recurrence


title: Patient_9_Y_Nr

tag: patient id

tag: gender

value: M

tag: age at diagnosis

tag: smoker

tag: drinker

value: Y

value: well

value: left ND, partial glossectomy, free forearm flap

tag: date of 1st recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_9_Y_Tm

tag: batch

value: never

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

value: no recurrence


title: Patient_9_Z_Tm

tag: grade

tag: treatment

tag: rtx

tag: qtx

value: N


title: RBG18073_GM-CSF_Day7_Parental

value: GM-CSF

tag: day

tag: condition


title: Patient_7_L_Nr

tag: patient id

tag: gender

tag: age at diagnosis

value: Mid medial margin

tag: recurrence status

tag: date of diagnosis

tag: date of 2nd recurrence


title: Patient_7_J_Tm

tag: smoker

tag: drinker

value: Tongue SCC

tag: date of 1st recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: BRx-156-2--12-01-15

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_7_J_Nr

tag: batch

tag: patient id

tag: pathology report

value: Anterior medial margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment

tag: rtx

tag: qtx


title: RBG18061_GM-CSF_Day7_Parental

tag: day

tag: condition

value: Parental


title: BRx-156-1--12-01-15

value: fail


title: Patient_7_I_Nr

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

value: Posterior margin

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: RBG18049_Parental

value: Untreated

tag: batch


title: Patient_7_G_Tm

tag: patient id

value: F

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment

value: left ND, mandibulotomy with resection of tongue, free forearm flap


title: Reanalysis Brx-146-1--08-06-15

tag: patient

tag: clinical hormone receptor

value: HR-

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: Patient_7_H_Nr

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

value: Posterior lateral margin

value: well

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence


title: Patient_7_M_Nr

tag: batch

tag: patient id

value: never

tag: pathology report

value: Posterior medial margin

tag: tumor size at maximum dimension

tag: Stage

value: no recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_7_G_Nr

tag: gender

tag: age at diagnosis

value: N

value: Mid lateral margin

tag: grade

tag: treatment


title: RBG18037_Parental

tag: day

tag: condition


title: RBG18025_Parental


title: Reanalysis Brx-132-1--06-09-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: RBG18013_Parental

tag: batch


title: Patient_7_F_Tm

tag: patient id

tag: smoker

tag: drinker

tag: pathology report

value: Tongue SCC

tag: tumor size at maximum dimension

tag: Stage

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence


title: Reanalysis Brx-131-1--09-15-15

tag: patient


title: Patient_7_E_Tm

tag: gender

tag: age at diagnosis

tag: grade

tag: treatment

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_7_E_Nr

tag: batch

tag: patient id

tag: smoker

tag: drinker

tag: pathology report

value: Anterior lateral


title: Reanalysis Brx-111-3--10-08-15

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_7_D_Tm

tag: gender

tag: tumor size at maximum dimension

tag: Stage

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence


title: Patient_7_D_Nr

tag: batch

tag: age at diagnosis

value: Anterior margin

tag: grade

tag: treatment

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: RBG17989_Parental

tag: day

tag: condition

value: Parental


title: Patient_7_A_Tm

tag: patient id

tag: gender

tag: smoker

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension


title: RBG18001_Parental


title: Patient_6_H_Nr

value: Inferior Posterior margin

tag: Stage

value: moderate

value: transoral resection of tongue

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence


title: Patient_6_G_Nr

tag: batch

value: F

tag: age at diagnosis

value: Superior Posterior margin

tag: grade

tag: treatment

tag: date of 2nd recurrence

tag: date of 3rd recurrence


title: Reanalysis Brx-111-2--10-08-15

tag: patient

tag: clinical hormone receptor

value: HR-

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: Patient_6_F_Tm

tag: patient id

tag: gender

tag: smoker

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: last follow-up

tag: date of death


title: Patient_14_X_Nr

tag: batch

value: M

tag: age at diagnosis

value: current

value: Y

value: Deep and medial margins

tag: grade

tag: treatment

value: bilat ND, mandibulectomy with resection of FOM, free fibula flap

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence


title: RBG17977_Parental

value: Untreated

tag: day

tag: condition


title: Reanalysis Brx-111-1--10-19-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: RBG17965_Parental


title: Reanalysis Brx-111-1--10-08-15


title: RBG18144_GM-CSF_Day7_Parental

value: GM-CSF


title: BRx-110-3--06-29-15

value: HR+


title: Patient_67_I_Tm

tag: patient id

tag: gender

tag: smoker

tag: drinker

tag: pathology report

value: Tongue SCC

tag: tumor size at maximum dimension

tag: Stage

value: bilat ND, glossectomy & midline FOM resection, free forearm flap

value: N

value: no recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: BRx-131-1--09-01-15

value: fail


title: Patient_67_E_Nr

tag: batch

value: F

tag: age at diagnosis

value: Medial and deep margins

tag: grade

value: moderate

tag: treatment

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence


title: RBG18132_GM-CSF_Day7_Parental

tag: day

tag: condition

value: Parental


title: BRx-110-2--10-13-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: Patient_67_D_Nr

tag: patient id

tag: gender

tag: smoker

value: current

tag: drinker

tag: pathology report

value: Lateral margin

tag: tumor size at maximum dimension

tag: Stage

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_67_C_Nr

tag: batch

tag: age at diagnosis

value: Y

tag: grade

tag: treatment

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence


title: Patient_6_D_Nr

tag: patient id

tag: gender

tag: smoker

value: never

tag: drinker

value: Anterior superior margin

value: transoral resection of tongue


title: RBG18120_GM-CSF_Day7_Parental

value: GM-CSF

tag: day

tag: condition


title: Patient_6_E_Nr

tag: pathology report

value: Inferior margin

tag: tumor size at maximum dimension

tag: Stage

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: Patient_66_W_Nr

tag: batch

tag: age at diagnosis

value: Normal FOM tissue and normal sublingual glands

tag: grade

tag: treatment

value: bilat ND, resection FOM ca, free forearm flap

tag: rtx

tag: date of death


title: Patient_66_V_Tm

tag: patient id

tag: gender

value: FOM SCC

value: N

tag: qtx

tag: recurrence status

value: no recurrence

tag: date of diagnosis

tag: date of 1st recurrence


title: BRx-110-2--06-29-15

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

value: fail

tag: ptprc expression


title: RBG18108_GM-CSF_Day7_Parental

tag: day

tag: batch

tag: condition

value: Parental


title: BRx-110-1--10-13-15

value: pass


title: Patient_66_U_Tm

value: F

tag: age at diagnosis

tag: smoker

value: current

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade

value: moderate

tag: treatment

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: Patient_66_S_Tm

tag: patient id

tag: gender

value: Y

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of death


title: Patient_65_R_Tm

tag: batch

tag: age at diagnosis

tag: smoker

value: never

tag: drinker

value: well

value: bilat ND, mandibulectomy with resection of FOM, free fibula flap

value: local recurrence


title: Patient_66_R_Tm

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade


title: Patient_67_H_Nr

value: Normal

tag: treatment

value: bilat ND, glossectomy & midline FOM resection, free forearm flap

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: RBG18084_GM-CSF_Day7_Parental

value: GM-CSF

tag: day

tag: condition


title: Patient_66_T_Tm

tag: patient id

tag: gender

value: FOM SCC

value: bilat ND, resection FOM ca, free forearm flap

tag: rtx

value: N

tag: qtx

tag: recurrence status

tag: date of diagnosis


title: Patient_67_G_Tm

tag: batch

tag: age at diagnosis

tag: smoker

tag: drinker

value: Tongue SCC

value: no recurrence

tag: date of 1st recurrence

tag: date of death


title: BRx-110-1--09-17-15

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: Patient_65_R_Nr

tag: patient id

value: F

tag: pathology report

value: Posterior margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: Patient_65_Q_Tm

tag: batch

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis


title: RBG18072_GM-CSF_Day7_Parental

tag: day

tag: condition

value: Parental


title: RBG18060_GM-CSF_Day7_Parental


title: BRx-110-1--07-27-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression

value: fail


title: BRx-110-2--09-17-15


title: Patient_65_Q_Nr

tag: patient id

value: never

tag: pathology report

value: Anterior margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

value: well

tag: treatment

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: BRx-110-1--06-29-15


title: Patient_65_P_Tm

tag: batch

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

value: bilat ND, mandibulectomy with resection of FOM, free fibula flap

tag: rtx

tag: qtx

tag: recurrence status

value: local recurrence

tag: date of diagnosis


title: RBG18096_GM-CSF_Day7_Parental

value: GM-CSF

tag: day

tag: condition


title: Patient_65_O_Tm

tag: patient id

tag: pathology report

value: FOM SCC

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment


title: RBG18036_Parental

value: Untreated

tag: batch


title: Patient_65_P_Nr

tag: gender

value: N

value: Medial margin

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Reanalysis Brx-82-8--3-9-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: BRx-96_1_111814


title: Reanalysis Brx-82_7_030915


title: RBG18048_Parental

tag: day

tag: condition


title: RBG18012_Parental


title: Patient_64_X_Nr

tag: patient id

value: M

tag: age at diagnosis

tag: smoker

value: former

tag: drinker

value: Y

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

value: moderate

value: bilat ND, mandibulotomy with glossectomy, free forearm flap

tag: rtx

tag: qtx

tag: recurrence status

value: no recurrence

tag: date of diagnosis


title: Patient_64_U_Nr

tag: batch

tag: gender

value: Posterior margin

tag: grade

tag: treatment

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_64_U_Tm

tag: patient id

tag: age at diagnosis

tag: smoker

tag: drinker

value: Tongue SCC


title: Patient_64_W_Tm

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: rtx


title: Patient_64_V_Nr

tag: batch

tag: qtx

tag: recurrence status

tag: date of diagnosis


title: Patient_64_I_Tm

tag: gender

value: center of the tumor

tag: grade

tag: treatment

tag: date of 1st recurrence


title: Patient_64_G_Tm

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Reanalysis Brx-82_6_030915

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: RBG18000_Parental

tag: day

tag: batch

tag: condition

value: Parental


title: Reanalysis Brx-82_5_030915


title: RBG17988_Parental


title: Patient_64_D_Tm

tag: patient id

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis


title: Patient_64_F_Tm

tag: gender

tag: grade

tag: treatment

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: BRx-82_4_030915

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

value: fail

tag: ptprc expression


title: Patient_64_E_Tm

tag: batch

tag: patient id

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: rtx


title: Patient_64_X_Tm

tag: gender

tag: grade

tag: treatment

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence


title: Patient_64_C_Tm

tag: batch

tag: patient id

tag: last follow-up

tag: date of death


title: Reanalysis Brx-82_3_030915

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: RBG17976_Parental

tag: day

tag: condition


title: Patient_64_C_Nr

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment

tag: rtx

tag: qtx


title: RBG18024_Parental

tag: batch


title: Patient_63_Q_Tm

tag: patient id

value: F

value: Alveolar SCC

value: bilat ND, marginal mandibulectomy, resection oral ca, free forearm flap

tag: recurrence status

value: local recurrence

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: RBG17964_Parental

value: Untreated

tag: day

tag: condition


title: RBG18143_GM-CSF_Day7_Parental

value: GM-CSF


title: Reanalysis Brx-82_2_030915

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: RBG18131_GM-CSF_Day7_Parental

tag: treatment


title: BRx-82_2_012015


title: RBG18119_GM-CSF_Day7_Parental

tag: batch


title: Patient_63_P_Nr

tag: patient id

tag: gender

tag: age at diagnosis

tag: smoker

value: former

tag: drinker

value: Y

tag: pathology report

value: Left lateral margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: rtx

tag: qtx

value: N


title: Patient_62_J_Tm

value: M

value: never

value: well

value: left ND, mandibulotomy with partial glossectomy, free forearm flap

tag: recurrence status

value: local & distant recurrence

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_63_P_Tm

tag: batch

tag: patient id

tag: gender

value: moderate

tag: treatment


title: Patient_62_K_Tm

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

value: Tongue SCC


title: Reanalysis Brx-82-1--1-12-15

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: Patient_62_I_Tm

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence


title: Patient_62_K_Nr

tag: batch

tag: patient id

tag: gender

tag: age at diagnosis

tag: smoker

value: Posterior lateral margin

tag: treatment

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: RBG18095_GM-CSF_Day7_Parental

tag: day

tag: condition

value: Parental


title: Patient_62_J_Nr

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: rtx


title: Patient_62_G_Tm

tag: batch

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence


title: RBG18083_GM-CSF_Day7_Parental

tag: treatment


title: Reanalysis Brx-82_1_030915

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_63_Q_Nr

tag: patient id

tag: gender

value: F

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

value: Right medial margin

value: bilat ND, marginal mandibulectomy, resection oral ca, free forearm flap

value: local recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Reanalysis Brx-82_1_012015


title: Reanalysis Brx-82-1--11-13-14


title: RBG18071_GM-CSF_Day7_Parental

value: GM-CSF

tag: day

tag: batch

tag: condition


title: Patient_62_G_Nr

value: Y

value: Superior medial margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment

tag: rtx

tag: qtx

value: N

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence


title: Patient_62_F_Nr

tag: patient id

tag: gender

value: M

tag: age at diagnosis

tag: smoker

value: never

tag: drinker

tag: pathology report

value: well


title: Patient_62_F_Tm

tag: batch

value: left ND, mandibulotomy with partial glossectomy, free forearm flap

value: local & distant recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Reanalysis Brx-82-2--11-13-14

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_61_J_Tm

value: Tongue SCC

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment

value: transoral resection of tongue

tag: rtx

tag: qtx

tag: recurrence status

value: local & regional recurrence

tag: date of diagnosis

tag: date of 1st recurrence


title: Patient_61_J_Nr

tag: batch

tag: patient id

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

value: Medial lateral margin

tag: date of 2nd recurrence

tag: date of 3rd recurrence


title: Patient_62_L_Tm

tag: tumor size at maximum dimension

tag: Stage

tag: last follow-up

tag: date of death


title: BRx-65_1_120314

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: Patient_61_I_Tm

tag: batch

tag: patient id

tag: grade

tag: treatment

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence


title: RBG18059_GM-CSF_Day7_Parental

tag: day

tag: condition

value: Parental


title: RBG18107_GM-CSF_Day7_Parental


title: BRx-55_2_120114

value: fail


title: RBG18047_Parental

value: Untreated


title: BRx-55_1_120114


title: Patient_61_G_Nr

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

value: Y

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_61_G_Tm

tag: batch

tag: patient id

tag: grade

tag: treatment

tag: rtx

tag: qtx


title: Patient_61_C_Nr

tag: gender

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence


title: BRx-47_4_070115

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: RBG18035_Parental

tag: day

tag: condition


title: Patient_60_G_Tm_2

tag: batch

value: F

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

value: Tongue + FOM SCC

tag: tumor size at maximum dimension

tag: Stage

value: moderate

value: right ND, composite resection, free forearm flap

value: local recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_61_C_Tm

tag: patient id

tag: gender

value: M

value: never

tag: grade

value: well

tag: treatment

tag: rtx

value: N

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence


title: BRx-47_3_070115

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: RBG18011_Parental

tag: day

tag: batch

tag: condition


title: BRx-47_2_070115


title: BRx-47_1_111114


title: RBG17987_Parental


title: RBG17999_Parental


title: Patient_60_G_Nr_2

tag: patient id

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

value: Normal

tag: tumor size at maximum dimension

tag: Stage

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_60_G_Tm_1

tag: gender

value: Tongue SCC

tag: grade

tag: treatment

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence


title: RBG17975_Parental

tag: day

tag: batch

tag: condition


title: Patient_60_F_Tm_1

tag: patient id

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

value: Tongue + FOM SCC (REPEATED CASE)

tag: tumor size at maximum dimension


title: Patient_60_F_Tm

tag: gender

value: repeated case, listed in Batch#2 file

tag: Stage

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_60_F_ Tm

tag: grade

tag: treatment

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis


title: Patient_60_G_Nr_1

tag: batch

tag: patient id

tag: age at diagnosis

value: Posterior margin

tag: date of 1st recurrence


title: RBG17963_Parental

value: Untreated

tag: day

tag: condition

value: Parental


title: BRx-47_1_070115

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

value: fail

tag: ptprc expression

value: pass


title: Patient_60_F_Nr_1

tag: gender

value: F

tag: smoker

tag: drinker

value: Y

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade

value: moderate

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_60_F_Nr

tag: batch

tag: patient id

tag: age at diagnosis

tag: treatment

value: right ND, composite resection, free forearm flap

tag: rtx

tag: qtx

tag: recurrence status

value: local recurrence

tag: date of diagnosis

tag: date of 1st recurrence


title: Patient_60_C_Nr_1

tag: gender

tag: smoker

value: never

tag: drinker

tag: pathology report


title: RBG18023_Parental

tag: day

tag: condition


title: Reanalysis Brx-42_2_110314

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: RBG18142_GM-CSF_Day7_Parental

tag: treatment

value: GM-CSF

tag: batch


title: Patient_60_G_Tm

tag: patient id

tag: age at diagnosis

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: rtx

value: N

tag: qtx

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_60_C_Nr

tag: gender

tag: smoker

tag: drinker

tag: pathology report

value: Medial margin

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence


title: Reanalysis Brx-42_1_110314

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_5_W_Nr

tag: batch

tag: patient id

tag: age at diagnosis

value: former

tag: tumor size at maximum dimension

tag: Stage

tag: grade

value: well

tag: treatment

value: right ND, mandibulotomy with resection of tongue, free forearm flap

tag: rtx

tag: qtx

value: no recurrence


title: RBG18130_GM-CSF_Day7_Parental

tag: day

tag: condition

value: Parental


title: Patient_5_W_Tm

tag: gender

tag: smoker

tag: drinker

tag: pathology report

value: Tumor

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: BRx-194-2--4-21-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: Patient_5_R_Tm

tag: batch

tag: patient id

value: F

tag: age at diagnosis

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment

tag: rtx

tag: qtx


title: RBG18118_GM-CSF_Day7_Parental

tag: day

tag: condition


title: Patient_5_Q_Tm

tag: gender

tag: smoker

tag: drinker

value: Y

tag: pathology report

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_5_P_Tm

tag: batch

tag: patient id

tag: age at diagnosis

value: P-S tumor from superior to inferior portions

tag: tumor size at maximum dimension

tag: Stage

tag: grade


title: BRx-193-2--5-26-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

value: fail

tag: ptprc expression


title: Patient_5_U_Tm

tag: gender

tag: smoker

tag: drinker

tag: pathology report

tag: treatment

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis


title: BRx-47_1_102914


title: RBG18106_GM-CSF_Day7_Parental

tag: day

tag: batch

tag: condition


title: Patient_60_F_ Nr

tag: patient id

tag: age at diagnosis

value: Anterior margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

value: moderate

value: right ND, composite resection, free forearm flap

value: local recurrence

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: BRx-189-3--4-10-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: BRx-193-1--5-26-15


title: RBG18094_GM-CSF_Day7_Parental

tag: treatment

value: GM-CSF

tag: day

tag: batch


title: RBG18082_GM-CSF_Day7_Parental

tag: condition


title: BRx-189_2_041015

value: HR+


title: Patient_59_K_Tm

tag: patient id

tag: gender

value: M

tag: age at diagnosis

tag: smoker

value: former

tag: drinker

value: N

tag: pathology report

value: Alveolar mucosa Mandible SCC

tag: tumor size at maximum dimension

value: right ND, mandibulectomy with resection oral cavity, free flap

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis


title: Patient_59_I_Tm

tag: Stage

tag: grade

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_59_J_Tm

tag: batch

tag: patient id

tag: gender

tag: treatment


title: Patient_5_P_Nr

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

value: Normal

value: well

value: right ND, mandibulotomy with resection of tongue, free forearm flap

value: no recurrence


title: RBG18070_GM-CSF_Day7_Parental

tag: day

tag: condition

value: Parental


title: Patient_59_I_Nr

value: Medial posterior margin

tag: tumor size at maximum dimension

tag: Stage

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis


title: Patient_59_H_Tm

tag: grade

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_59_G_Tm

tag: batch

tag: patient id

tag: gender

tag: age at diagnosis

tag: smoker

tag: treatment


title: Patient_59_H_Nr

tag: drinker

tag: pathology report

value: Posterior margin

tag: tumor size at maximum dimension

tag: Stage


title: RBG18058_GM-CSF_Day7_Parental

tag: day

tag: condition


title: RBG18046_Parental

value: Untreated


title: Patient_59_F_Tm

value: Lateral margin

tag: grade

value: moderate

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence


title: Patient_59_G_Nr

tag: batch

tag: patient id

value: Posterior lateral margin

value: local recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: RBG18034_Parental

tag: treatment


title: Reanalysis Brx-183_6_031015

tag: patient

tag: clinical hormone receptor

value: HR-

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: Patient_59_E_Tm

tag: gender

value: M

tag: age at diagnosis

tag: smoker

value: former

tag: drinker

value: N

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: rtx


title: Patient_59_E_Nr

tag: batch

tag: patient id

value: Anterior margin

value: right ND, mandibulectomy with resection oral cavity, free flap

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: Reanalysis Brx-183_5_031015

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: RBG18022_Parental

tag: treatment

tag: day

tag: condition


title: Patient_58_O_Nr

tag: batch

tag: gender

value: F

tag: age at diagnosis

tag: smoker

tag: drinker

value: Y

tag: pathology report

value: Anterior to Posterior margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

value: rigth ND, composite resection, partial glossectomy, free forearm flap

tag: rtx

tag: date of death


title: Patient_59_K_Nr

tag: patient id

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: Reanalysis Brx-183_4_031015

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_58_M_Tm

tag: batch

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

value: Alveolar SCC

tag: tumor size at maximum dimension

tag: Stage

tag: treatment


title: Patient_58_M_Nr

tag: patient id

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of death


title: Patient_57_X_Tm

tag: batch

tag: gender

value: well

value: left supraomohyoid ND, marginal mandibulectomy, resection tongue cancer

value: local recurrence; new regional recurrence - Jun24, 2013

tag: date of 3rd recurrence

tag: last follow-up


title: RBG17998_Parental

value: Untreated

tag: day

tag: condition

value: Parental


title: BRx-189-1--4-10-15

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

value: fail

tag: ptprc expression


title: Reanalysis Brx-183-3--3-10-15

value: HR-

value: pass


title: RBG18010_Parental

tag: treatment


title: Reanalysis Brx-183_2_031015


title: Reanalysis Brx-183-7--3-10-15


title: Patient_57_R_Tm

tag: patient id

value: M

tag: age at diagnosis

tag: smoker

value: former

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: rtx

tag: qtx

value: N

tag: recurrence status


title: RBG17986_Parental

tag: day

tag: batch

tag: condition


title: Patient_57_R_Nr

tag: gender

value: Lateral margin

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Reanalysis Brx-183_1_031015

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_57_Q_Tm

tag: patient id

tag: age at diagnosis

tag: smoker

tag: drinker

value: Y

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment

tag: rtx

tag: qtx


title: Patient_57_N_Tm

tag: batch

tag: gender

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: BRx-18-1--1-12-15

tag: patient

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: RBG17962_Parental

tag: day

tag: condition


title: Patient_57_Q_Nr

tag: patient id

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment

tag: rtx


title: Reanalysis Brx-172-5--11-11-14

tag: clinical hormone receptor


title: RBG18141_GM-CSF_Day7_Parental

value: GM-CSF

tag: batch


title: RBG18129_GM-CSF_Day7_Parental


title: BRx-172-4-11-11-14

tag: patient

tag: clinical her2


title: Patient_56_R_Nr

tag: gender

value: Anterior right margin

value: moderate

value: lateral rhinotomy approach, bilat maxillectomy

tag: qtx

tag: recurrence status

value: local recurrence

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_57_N_O_Nr

tag: patient id

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

value: Posterior margin

tag: tumor size at maximum dimension

tag: Stage

value: well

value: left supraomohyoid ND, marginal mandibulectomy, resection tongue cancer

value: local recurrence; new regional recurrence - Jun24, 2013


title: Patient_56_R_Tm

tag: batch

value: Maxillary SCC

tag: grade

tag: treatment

tag: rtx


title: Patient_57_N_Nr

tag: gender

value: Anterior margin

tag: qtx

tag: recurrence status

tag: date of diagnosis


title: RBG18117_GM-CSF_Day7_Parental

tag: day

tag: condition

value: Parental


title: RBG18105_GM-CSF_Day7_Parental


title: Reanalysis Brx-172_2_111114

tag: patient

tag: clinical hormone receptor

value: HR-

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: BRx-172_3_111114

value: fail


title: Patient_60_G_Nr

tag: patient id

value: F

tag: age at diagnosis

tag: smoker

value: never

tag: drinker

tag: tumor size at maximum dimension

value: right ND, composite resection, free forearm flap

value: N

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: RBG17974_Parental

tag: treatment

value: Untreated

tag: day

tag: batch


title: Patient_56_P_Nr

tag: gender

value: M

value: former

value: Y

tag: pathology report

value: Right palate margin

tag: Stage

tag: grade

value: moderate

value: lateral rhinotomy approach, bilat maxillectomy

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis


title: Patient_56_N_Tm

tag: patient id

tag: age at diagnosis

tag: smoker

tag: drinker

value: Maxillary SCC

tag: tumor size at maximum dimension

value: local recurrence


title: Patient_56_N_Nr

value: Left surgical margin

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_56_M_Tm

tag: batch

tag: gender

tag: pathology report

tag: treatment


title: Reanalysis Brx-172-1--4-16-15

tag: patient

tag: clinical hormone receptor

value: HR-

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: RBG18093_GM-CSF_Day7_Parental

value: GM-CSF

tag: day

tag: condition

value: Parental


title: Patient_57_P_Tm

tag: patient id

tag: age at diagnosis

tag: smoker

tag: drinker

value: Alveolar SCC

tag: tumor size at maximum dimension

tag: Stage

tag: grade

value: well

value: left supraomohyoid ND, marginal mandibulectomy, resection tongue cancer

tag: rtx

tag: qtx

tag: recurrence status

value: local recurrence; new regional recurrence - Jun24, 2013

tag: date of diagnosis


title: Patient_55_H_Tm

tag: batch

tag: gender

value: F

value: current

tag: pathology report

value: FOM SCC

tag: treatment

value: bilat ND, composite resection, free forearm flap

value: N

value: no recurrence

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Reanalysis Brx-172_1_120114

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression

value: fail


title: Patient_57_N_O_Tm

tag: patient id

value: M

tag: age at diagnosis

tag: smoker

value: former

tag: drinker

value: Y

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: rtx

tag: qtx


title: RBG18081_GM-CSF_Day7_Parental

tag: treatment

value: GM-CSF

tag: day

tag: batch

tag: condition


title: Patient_56_M_Nr

tag: gender

tag: pathology report

value: Posterior margin

value: moderate

value: lateral rhinotomy approach, bilat maxillectomy

tag: recurrence status

value: local recurrence

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_55_E_Nr

tag: patient id

tag: age at diagnosis

tag: smoker

tag: drinker

value: Right posterior gingival mucosal margin

tag: tumor size at maximum dimension

tag: Stage


title: Reanalysis Brx-172_1_111114

tag: patient

tag: clinical hormone receptor

value: HR-

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_56_P_Tm

tag: batch

tag: gender

tag: pathology report

value: Maxillary SCC

tag: grade

tag: treatment

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis


title: Reanalysis Brx-16_3_120314


title: RBG18057_GM-CSF_Day7_Parental

tag: day

tag: condition

value: Parental


title: RBG18069_GM-CSF_Day7_Parental


title: Patient_55_C_Tm

tag: patient id

value: F

tag: age at diagnosis

tag: smoker

value: current

tag: drinker

value: FOM SCC

tag: tumor size at maximum dimension

tag: Stage

value: bilat ND, composite resection, free forearm flap

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_55_B_Tm

tag: batch

tag: gender

tag: pathology report

tag: grade

tag: treatment

tag: rtx

value: N

value: no recurrence


title: Patient_55_B_Nr

tag: patient id

value: Right lateral posterior margin

tag: qtx

tag: recurrence status

tag: date of diagnosis


title: Patient_55_A_Tm

tag: age at diagnosis

tag: smoker

tag: drinker

value: Y

tag: tumor size at maximum dimension


title: Patient_56_O_Nr

value: M

value: former

value: Anterior left margin

tag: Stage

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence


title: Reanalysis Brx-16_2_120314

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: RBG18045_Parental

tag: treatment

value: Untreated

tag: day

tag: batch

tag: condition


title: Patient_54_M_Tm

tag: patient id

tag: gender

tag: age at diagnosis

tag: grade

value: moderate

value: left ND, left partial glossectomy & FOM

tag: rtx

tag: qtx

tag: recurrence status

value: local recurrence

tag: date of diagnosis

tag: last follow-up

tag: date of death


title: Reanalysis Brx-16_2_102214

tag: patient

tag: clinical hormone receptor

value: HR-

tag: clinical her2

value: fail


title: Patient_54_M_Nr

tag: smoker

tag: drinker

tag: pathology report

value: Superior half from anterior to posterior margins

tag: tumor size at maximum dimension

tag: Stage

tag: treatment

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence


title: Reanalysis Brx-16_1_120314

tag: number uniquely mapped reads

tag: ptprc expression


title: RBG18021_Parental

tag: day

tag: batch

tag: condition

value: Parental


title: Patient_54_L_Tm

tag: patient id

tag: gender

tag: age at diagnosis

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: last follow-up

tag: date of death


title: RBG18033_Parental

tag: treatment


title: Patient_54_J_Tm

tag: smoker

tag: drinker

tag: tumor size at maximum dimension

tag: Stage

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence


title: Patient_54_K_Tm

tag: batch

tag: patient id

tag: gender


title: Reanalysis Brx-16_1_102214

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_54_K_Nr

tag: age at diagnosis

tag: pathology report

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: last follow-up

tag: date of death


title: Patient_54_J_Nr

tag: batch

tag: smoker

tag: drinker

tag: tumor size at maximum dimension

tag: Stage

tag: treatment

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence


title: Reanalysis Brx-146-1--4-16-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: RBG18009_Parental

tag: day

tag: condition


title: Patient_54_I_Nr

tag: patient id

tag: gender

tag: age at diagnosis

tag: pathology report

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: last follow-up

tag: date of death


title: RBG17997_Parental

tag: treatment

tag: batch


title: BRx-139_1_102814

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads


title: Patient_54_E_Tm

tag: patient id

tag: smoker

tag: drinker

value: Tongue SCC

tag: tumor size at maximum dimension

tag: Stage

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence


title: Patient_54_G_Tm

tag: gender

tag: age at diagnosis

tag: pathology report

tag: grade

tag: rtx

tag: qtx

value: N

tag: recurrence status

tag: date of diagnosis


title: RBG17985_Parental

tag: treatment

tag: day

tag: batch

tag: condition


title: Reanalysis Brx-136_2_123014

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: RBG17973_Parental


title: Reanalysis Brx-136_1_123014


title: Patient_54_D_Nr

tag: patient id

tag: gender

tag: smoker

tag: drinker

value: Inferior half from anterior to posterior margins

tag: tumor size at maximum dimension

tag: Stage

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_54_E_Nr

tag: batch

tag: age at diagnosis

tag: pathology report

tag: grade

tag: treatment

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis


title: RBG17961_Parental

tag: day

tag: condition


title: Patient_53_T_Tm

tag: patient id

tag: gender

tag: smoker

value: current

tag: drinker

value: Tongue + FOM SCC

tag: tumor size at maximum dimension

tag: Stage

value: bilat ND, mandibulotomy with tongue, FOM, free forearm flap


title: BRx-131_2_031715

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: RBG12501_ME-Transformed

tag: treatment

value: Immort

tag: batch

value: ME-Transformed


title: BRx-132_2_111314

value: pass


title: Patient_53_S_Dys

value: M

tag: age at diagnosis

value: Y

tag: pathology report

value: Anterior and medial margin of tongue (exclude)

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_53_S_Tm

tag: patient id

tag: gender

tag: smoker

tag: drinker

tag: tumor size at maximum dimension

tag: Stage

value: moderate

value: local recurrence

tag: date of diagnosis


title: RBG12500_ME-Transformed

tag: treatment

tag: day

tag: batch

tag: condition


title: Patient_53_Q_Tm

tag: age at diagnosis

tag: pathology report

tag: grade

tag: rtx

tag: qtx

tag: recurrence status


title: Patient_53_R_Tm

tag: patient id

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: BRx-131_1_031715

tag: patient

tag: clinical hormone receptor

value: HR-

tag: clinical her2

tag: number uniquely mapped reads

value: fail

tag: ptprc expression


title: RBG12499_ME-Transformed

tag: treatment

tag: day

tag: batch

tag: condition


title: RBG12498_ME-Transformed


title: Patient_54_I_Tm

tag: gender

tag: age at diagnosis

tag: smoker

value: former

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade

value: left ND, left partial glossectomy & FOM

tag: rtx

tag: qtx

tag: date of diagnosis


title: Patient_52_U_Nr

tag: patient id

value: FOM margin

value: right modified radical ND, left suprahyoid ND, right mandibulectomy, hemi-glossectomy, left free fibula flap

value: N

tag: recurrence status

value: no recurrence

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_52_T_Nr

tag: batch

tag: gender

tag: age at diagnosis

value: current

tag: treatment


title: Patient_53_P_Tm

tag: smoker

tag: drinker

tag: pathology report

value: Tongue + FOM SCC

tag: tumor size at maximum dimension

value: bilat ND, mandibulotomy with tongue, FOM, free forearm flap


title: RBG12497_ME-Transformed

value: Immort

tag: day

tag: condition

value: ME-Transformed


title: BRx-129_1_111814

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression

value: pass


title: Patient_52_S_Nr

tag: patient id

value: M

value: Y

value: Lateral gingival margin

tag: Stage

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: Patient_54_D_Tm

tag: batch

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

tag: pathology report

value: Tongue SCC

tag: tumor size at maximum dimension

value: moderate

tag: treatment

value: local recurrence

tag: date of death


title: Patient_52_F_Tm

tag: patient id

value: Mouth SCC

tag: Stage

tag: grade

tag: rtx


title: BRx-122-3--11-13-14

tag: patient

tag: number uniquely mapped reads

value: fail

tag: ptprc expression


title: Patient_52_S_Tm

value: right modified radical ND, left suprahyoid ND, right mandibulectomy, hemi-glossectomy, left free fibula flap

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: BRx-122_2_111314


title: RBG12495_ME-Transformed

tag: day

tag: batch

tag: condition


title: Patient_51_G_Tm

tag: patient id

tag: gender

value: F

tag: age at diagnosis

tag: smoker

value: never

tag: drinker

value: N

tag: pathology report

value: Mandible SCC

tag: tumor size at maximum dimension

tag: treatment

value: right modified radical ND, right mandibulectomy, composite resection, left free fibula flap

tag: date of death


title: RBG12494_ME-Transformed

value: Immort


title: Patient_51_H_Tm

tag: Stage

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

value: no recurrence

tag: date of diagnosis


title: BRx-122-1--11-13-14

tag: patient

tag: number uniquely mapped reads

tag: ptprc expression

value: pass


title: RBG12496_ME-Transformed

tag: day

tag: batch

tag: condition

value: ME-Transformed


title: BRx-97-3

tag: clinical hormone receptor

value: HR+

tag: clinical her2


title: RBG12493_ME-Transformed


title: Patient_53_Q_Nr

tag: patient id

tag: gender

value: M

tag: age at diagnosis

tag: smoker

value: current

tag: drinker

value: Y

tag: pathology report

value: Medial margin

tag: tumor size at maximum dimension

value: bilat ND, mandibulotomy with tongue, FOM, free forearm flap

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: Patient_51_G_Nr

value: Lateral margin

tag: Stage

tag: grade

value: moderate

tag: treatment

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of death


title: Patient_51_E_Tm

tag: batch

tag: patient id

tag: gender

value: F

tag: age at diagnosis

value: Medial lateral margin


title: Patient_51_F_Tm

tag: smoker

value: never

tag: drinker

value: N

tag: pathology report

tag: tumor size at maximum dimension


title: Reanalysis Brx-129_2_111814

tag: patient

tag: clinical hormone receptor

value: HR-

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression

value: fail


title: BRx-97-2


title: Patient_51_D_Nr

value: Medial anterior margin

tag: Stage

tag: grade

tag: treatment

value: right modified radical ND, right mandibulectomy, composite resection, left free fibula flap

tag: rtx

tag: qtx

value: no recurrence

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: Patient_51_C_Tm

tag: batch

tag: patient id

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

value: Mandible SCC

tag: recurrence status

tag: date of diagnosis

tag: date of death


title: RBG12492_ME-Transformed

value: Immort

tag: day

tag: condition

value: ME-Transformed


title: BRx-97-1

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression

value: pass


title: Patient_52_F_Nr

value: M

value: current

value: Y

tag: pathology report

value: Tongue margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment

value: right modified radical ND, left suprahyoid ND, right mandibulectomy, hemi-glossectomy, left free fibula flap

tag: rtx

tag: qtx

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: Patient_51_D_Tm

tag: batch

tag: patient id

tag: gender

value: F

tag: age at diagnosis

tag: smoker

value: never

tag: drinker

value: moderate

tag: recurrence status

tag: date of diagnosis

tag: date of death


title: BRx-82-4--9-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

value: fail

tag: ptprc expression


title: Patient_51_C_Nr

value: N

tag: pathology report

value: Anterior mucosal margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment

tag: rtx

tag: qtx

tag: date of 1st recurrence

tag: date of 2nd recurrence


title: Patient_50_S_Nr

tag: batch

tag: patient id

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

value: Anterior lateral FOM margin

value: left ND, partial glossectomy, composite resection, free forearm flap

tag: recurrence status

value: regional recurrence-ipsilateral

tag: date of 3rd recurrence

tag: last follow-up


title: Patient_50_W_Nr

tag: pathology report

value: Posterior margin

tag: tumor size at maximum dimension

tag: date of diagnosis

tag: date of death


title: Patient_50_W_Tm

tag: Stage

tag: grade

tag: treatment

tag: rtx


title: Patient_50_R_Tm

tag: batch

tag: qtx

tag: date of 1st recurrence

tag: date of 2nd recurrence


title: RBG12490_ME-Transformed

value: Immort

tag: day

tag: condition

value: ME-Transformed


title: Reanalysis Brx-82-3--9-15

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: RBG12489_ME-Transformed


title: RBG12488_ME-Transformed


title: Reanalysis Brx-82-2--9-29


title: Reanalysis Brx-82-2--9-15


title: Patient_50_Q_Tm

tag: patient id

tag: gender

value: M

tag: age at diagnosis

tag: smoker

value: current

tag: drinker

value: Y

tag: tumor size at maximum dimension

tag: recurrence status

tag: date of diagnosis

tag: date of 3rd recurrence

tag: last follow-up


title: RBG12487_ME-Transformed

tag: treatment

tag: day

tag: batch


title: Patient_50_O_Nr

tag: pathology report

value: Anterior tip margin

tag: Stage

tag: grade

tag: rtx

tag: qtx

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of death


title: Patient_50_N_Nr

tag: patient id

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

value: Superior midline margin


title: Patient_50_Q_Nr

value: Lateral FOM margin

tag: tumor size at maximum dimension

value: moderate

tag: recurrence status

tag: date of diagnosis

tag: date of 3rd recurrence

tag: last follow-up


title: RBG12486_ME-Transformed

tag: treatment

tag: day

tag: batch

tag: condition


title: RBG12491_ME-Transformed


title: Reanalysis Brx-82-1--9-15

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression

value: fail


title: Patient_4_S_Tm

tag: patient id

tag: gender

value: F

tag: age at diagnosis

value: former

tag: pathology report

value: Maxillary SCC

tag: Stage

tag: grade

value: left ND, partial maxillectomy, free forearm flap

tag: rtx

value: N

tag: qtx

value: local recurrence

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of death


title: Patient_4_T_Nr

tag: batch

tag: smoker

tag: drinker

value: Medial margin

tag: tumor size at maximum dimension

tag: treatment

tag: recurrence status

tag: date of diagnosis

tag: date of 3rd recurrence

tag: last follow-up


title: Patient_4_W_Nr

tag: patient id

tag: gender

tag: age at diagnosis

tag: pathology report

value: Anterior margin


title: RBG12485_ME-Transformed

value: Immort

tag: day

tag: condition

value: ME-Transformed


title: Patient_4_S_Nr

value: Lateral margin near anterior end

tag: Stage

tag: grade

tag: rtx

tag: qtx

tag: date of 1st recurrence

tag: date of 2nd recurrence


title: Reanalysis Brx-42-3--9-29

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: RBG12484_ME-Transformed

tag: treatment

tag: batch


title: Patient_4_R_Tm

tag: patient id

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

tag: tumor size at maximum dimension

tag: recurrence status

tag: date of diagnosis

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_4_R_Nr

tag: pathology report

value: Lateral margin near posterior end

tag: Stage

tag: grade

tag: rtx

tag: qtx

tag: date of 1st recurrence

tag: date of 2nd recurrence


title: Reanalysis Brx-42-2--9-29

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_49_G_Nr

tag: batch

tag: patient id

tag: gender

tag: age at diagnosis

tag: smoker

value: never

tag: drinker

value: Posterior margin

tag: tumor size at maximum dimension

tag: treatment

value: partial glossectomy

tag: recurrence status


title: RBG12483_ME-Transformed

tag: day

tag: condition


title: Patient_49_E_Nr

value: F

tag: pathology report

value: Inferior margin

tag: Stage

tag: grade

value: moderate

tag: rtx

tag: qtx

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_49_E_Tm

tag: batch

tag: patient id

tag: gender

tag: age at diagnosis

tag: smoker

tag: drinker

value: Tongue SCC


title: Reanalysis Brx-82-1--9-29

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Reanalysis Brx-42-2--9-14


title: RBG12482_ME-Transformed

tag: treatment

tag: day

tag: condition


title: Patient_49_D_Tm

value: N

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: rtx

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence


title: Reanalysis Brx-42-1--9-29

tag: patient

tag: clinical hormone receptor

tag: clinical her2


title: Patient_4_W_Tm

tag: batch

tag: patient id

tag: gender

tag: age at diagnosis

tag: smoker

value: former

tag: drinker

value: Maxillary SCC

tag: treatment

value: left ND, partial maxillectomy, free forearm flap

value: local recurrence

tag: last follow-up

tag: date of death


title: Patient_49_D_Dys

tag: pathology report

value: Margin with dysplasia ΓÇô exclude this sample or the entire case

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: rtx

tag: qtx

tag: recurrence status


title: Reanalysis Brx-42-1--9-22

tag: patient

tag: clinical hormone receptor

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_48_L_Nr

tag: batch

tag: patient id

tag: gender

tag: age at diagnosis

tag: smoker

value: Y

value: bilat ND, mandibulotomy with partial glossectomy, free forearm flap

value: probable recurrence

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence


title: Patient_48_L_Tm

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment

tag: rtx

tag: last follow-up

tag: date of death


title: Patient_48_J_Tm

tag: batch

tag: patient id

tag: qtx

tag: recurrence status


title: RBG12479_ME-Transformed

value: Immort

tag: day

tag: condition

value: ME-Transformed


title: Patient_48_K_Tm

tag: gender

tag: age at diagnosis

tag: smoker

value: never

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence


title: Reanalysis Brx-42-1--9-14

tag: patient

tag: clinical hormone receptor

value: HR+

tag: clinical her2

tag: number uniquely mapped reads

value: pass

tag: ptprc expression


title: Reanalysis Brx-42-1--10-20


title: Patient_48_I_Tm

tag: batch

value: F

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: treatment

tag: rtx

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: RBG12478_ME-Transformed

tag: day

tag: condition


title: Patient_48_I_Nr

tag: patient id

tag: gender

tag: age at diagnosis

tag: smoker

value: Inferior margin

value: moderate

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of 2nd recurrence


title: Patient_48_J_Nr

tag: batch

tag: drinker

tag: pathology report

value: Superior margin

tag: tumor size at maximum dimension

tag: Stage

tag: grade

value: N


title: RBG12481_ME-Transformed

tag: treatment

tag: day


title: RBG12477_ME-Transformed

tag: condition


title: Patient_48_H_Nr

tag: patient id

tag: gender

value: Anterior margin

tag: rtx

tag: date of 3rd recurrence

tag: last follow-up

tag: date of death


title: Patient_48_H_Tm

tag: age at diagnosis

tag: smoker

value: Tongue SCC

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence


title: RBG12476_ME-Transformed

tag: batch


title: BRx-18du42

tag: patient

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: BRx-18-1

value: fail


title: RBG12475_ME-Transformed

tag: treatment

tag: day

tag: condition


title: BRx-172-2--9-30

tag: clinical hormone receptor

value: HR-


title: RBG12480_ME-Transformed


title: Patient_48_G_Nr

tag: patient id

tag: gender

tag: drinker

value: Y

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: rtx

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: Patient_48_E_Tm

tag: batch

tag: age at diagnosis

tag: smoker

value: bilat ND, mandibulotomy with partial glossectomy, free forearm flap

tag: qtx

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of death


title: Patient_49_D_Nr

tag: patient id

tag: gender

tag: drinker

tag: treatment

value: partial glossectomy

value: local recurrence


title: RBG12474_ME-Transformed

value: Immort

tag: day

tag: condition

value: ME-Transformed


title: Patient_48_F_Tm

value: never

tag: pathology report

tag: tumor size at maximum dimension

tag: Stage

tag: grade

tag: rtx

value: probable recurrence

tag: date of 2nd recurrence


title: Patient_48_E_Nr

tag: batch

value: F

tag: age at diagnosis

tag: smoker

tag: qtx

tag: date of 3rd recurrence

tag: last follow-up


title: Patient_48_G_Tm

tag: patient id

tag: gender

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of death


title: Patient_48_F_Nr

tag: drinker

tag: pathology report

tag: tumor size at maximum dimension

tag: treatment


title: BRx-171-1--9-30

tag: patient

tag: number uniquely mapped reads

tag: ptprc expression

value: pass


title: BRx-42-1

tag: clinical hormone receptor

value: HR+

tag: clinical her2


title: Reanalysis Brx-172-1--9-30


title: RBG12472_ME-Transformed

tag: day

tag: batch

tag: condition


title: Patient_47_H_Tm

tag: patient id

tag: gender

tag: age at diagnosis

tag: smoker

value: former

tag: Stage

tag: grade

value: poor

value: left ND, left hemiglossectomy

tag: rtx

tag: qtx

value: no recurrence

tag: date of 2nd recurrence

tag: date of 3rd recurrence

tag: last follow-up


title: Patient_47_G_Tm

tag: drinker

value: N

tag: pathology report

value: Tongue SCC

tag: tumor size at maximum dimension

tag: treatment

tag: recurrence status

tag: date of diagnosis

tag: date of 1st recurrence

tag: date of death


title: Reanalysis Brx-170-2

tag: patient

tag: clinical hormone receptor

value: HR-

tag: clinical her2

tag: number uniquely mapped reads

tag: ptprc expression


title: Patient_47_I_Nr

tag: batch

tag: patient id

tag: gender

tag: age at diagnosis

tag: smoker

value: Inferior margin

tag: Stage

tag: grade

tag: rtx

tag: qtx


title: RBG12471_ME-Transformed

tag: treatment

tag: day

tag: condition


title: Reanalysis Brx-170-1

tag: patient