title: Inactive_10

city: Cincinnati

first: Grant

last: Schulert

state: OH

address: 3333 Burnet Ave

department: Pediatrics

institute: Cincinnati Children's Hospital

data_processing:
Index Homo_sapiens.grch38.cdna.all.release-94_k31.idx was downloaded from github repository pachterlab/kallisto-transcriptome-indices
kallisto version 0.46.0 used for quantification with parameters --single -l 200 -s 20
Supplementary_files_format_and_content: Tab-delimited text files include kallisto abundance estimates for each sample.

extract_protocol:
Total RNA was extracted following cell separation using the mirVana miRNA isolation kit (Life technologies, Carlsbad, CA)
Genomic libraries were created using TruSeq Stranded mRNA Sample Prep Kits (Illumina, San Diego, CA, USA)

tag: batch

tag: sample type

value: Inactive

value: F

tag: age

tag: fever

value: N

tag: rash

tag: arthritis

tag: hepatosplenomegaly

tag: lymphoadenopathy

tag: wbc

tag: hemoglobin

tag: platelets

tag: esr

tag: crp

tag: ferritin (ng/ml)

tag: sil2r (pg/ml)


title: Inactive_9

status: Public on Mar 27 2020

type: SRA

country: USA

library_source: transcriptomic

molecule: total RNA

organism: Homo sapiens

tag: Sex


title: Inactive_8


title: WHEL ID 1403

type: RNA

city: La Jolla

first: Loki

last: Natarajan

address: 3855 Health Sciences DR

institute: University of California, San Diego

description:
NanoString reporter probe
X2895390531_4

hyb_protocol: Transcript expression was quantified with 250 ng of total RNA using the NanoString nCounter analysis system with a custom miRGE CodeSet. Assay reactions were assembled per manufacturer’s specifications (NanoString Technologies, INC Seattle, WA).

scan_protocol: See manufacturer's website http://www.nanostring.com for procedures.  Digital Analyzer was set to scan at 1155 FOV (fields of view).

data_processing: R-NanoStringNorm package was used to normalize data. Code count normalization used 6 positive controls and background subtraction used 8 negative controls. All expression values were first log2 transformed.  For mRNAs, five (ACTB, PSMC4, MRPL19, RPLPO, SF3A1) genes were used as housekeepers; the data matrix elements are relative gene expression values (log2 transformed) compared to log2 value of the geometric mean of the five house-keepers within each sample. For miRNAs, log2 expression values are presented.  For miRNAs, quantile normalization was performed. Normalized datasets for both mRNA and miRNA are available on the series record. Sample data tables include data only for mRNAs.

source_name: primary breast cancer

extract_protocol: Unstained slides from archival specimens with ≥ 40% tumor cellularity were incubated at 65 °C for 30 minutes and deparaffinized using Citrisolv  (Fisher Scientific, Pittsburgh, PA) followed by ethanol wash. Tumor tissues were macrodissected into RNAse-free microfuge tubes, and nucleic acids isolated using the Qiagen AllPrep FFPE kit (#80234).  Manufacturer’s instructions were followed with the exception that the proteinase K digestion step was extended to an overnight incubation for the DNA isolation.

tag: tissue

value: primary breast cancer


title: MCF7, control, replicate N1

city: Trieste

first: Silvano

last: Piazza

address: localita' Padriciano 99

country: Italy

institute: ICGEB

description: Gene expression of MCF7 cells

hyb_protocol: 1.65 mg of Cy3-labeled cRNA (specific activity: 19.4 ±1.6 pmol Cy3 per mg cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 55 ml containing 1x Fragmentation Buffer and 2x GE (Gene Expression) Blocking Agent (Gene Expression Hybridization Kit, p/n 5188-5242, Agilent Technologies) following manufacturer’s instructions. On completion of the fragmentation reaction, 55 ml of 2x Hi-RPM Hybridization Buffer were added to the fragmentation mixture and hybridized to Agilent Mouse GE 4x44K V2 Microarray kit (G4846A, Agilent Technologies) for 17 hours at 65°C in a rotating hybridization oven.

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2505C, Agilent Technologies) using the AgilentHD_GX_1Color Profile (Scan Area: 61x21.6 mm; Scan resolution: 5 mm, dye channel set to 100% Green PMT) of Agilent ScanControl software 8.1.3 (Agilent Technologies).

data_processing:
The scanned images were analyzed with Feature Extraction Software 10.7.3.1 (Agilent Technologies) using default parameters protocol GE1_107_Sep09).
Background signal has been correct using Edwards method as implemented in limma package. Normalization between samples has been performed using quantile method as implemented in limma package.

source_name: MCF7, control, replicate N1

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.2 g RNA using the One-Color Low Input Quick Amp Labeling Kit (p/n 5190-2331, Agilent Technologies)

growth_protocol: MCF7 breast cancer cells were plated in 10 cm dishes in regular DMEM medium containing 10% FBS and 1.0 g/L glucose

extract_protocol: TRIZOL RNA Isolation Protocol was followed.

treatment_protocol: The DMEM cell medium was removed and cells were incubated for 24h either in the same medium or in low-glucose (0.5 g/L) DMEM medium with 1 % FBS (short-term starvation conditions). 24h later, tamoxifen (5 uM) or vehicle were added to the culture medium. 24 h later, cells were used for RNA extraction and gene expression was assessed by standard gene expression microarrays.

tag: cell line

tag: protocol

value: control


title: Inactive_7

tag: batch

tag: sample type

tag: age


title: MCF7, control, replicate N4

description: Gene expression of MCF7 cells

source_name: MCF7, control, replicate N4


title: MCF7, control, replicate N3

description: Gene expression of MCF7 cells

source_name: MCF7, control, replicate N3


title: MCF7, control, replicate N2

description: Gene expression of MCF7 cells

source_name: MCF7, control, replicate N2


title: WHEL ID 1225

description:
NanoString reporter probe
X2895390537_11

label_protocol: See manufacturer's website http://www.nanostring.com for procedures


title: MCF7, starvation, replicate N4

description: Gene expression of MCF7 cells grown for 24 hours in low-glucose (0.5 g/L) DMEM medium with 1 % FBS

source_name: MCF7, starvation, replicate N4

value: starvation


title: WHEL ID 1318

description:
NanoString reporter probe
X2895390529_2


title: WHEL ID 5501

description:
NanoString reporter probe
X2895390528_1


title: WHEL ID 9401

description:
NanoString reporter probe
X2895390527_12


title: Inactive_5


title: Inactive_4


title: WHEL ID 9309

description:
NanoString reporter probe
X2895390526_11


title: WHEL ID 7327

description:
NanoString reporter probe
X2895390524_8


title: WHEL ID 3267

description:
NanoString reporter probe
X2895390525_10


title: Inactive_3


title: 172455

type: genomic

city: NICE

first: Thibault

last: FABAS

address: 28 av Valombrose

country: France

institute: CHU Nice

hyb_protocol: DNA was hybridized with the hybridization kit according the Agilent protocol

scan_protocol: We used a Surescan provided by Agilent and controled by SureScan Software

data_processing: the data was processed on Cytogenomics 2.9.1.3 using the Default Analysis Method - CGH v2 proposed by Agilent

molecule: genomic DNA

source_name: chromophobe rcc

label_protocol: DNA was labeled with the sureTag labeling kit accirding the agilent protocol

extract_protocol: DNA was extracted from fresh, frozen or formol fixed-paraffin embedded fragments using Qiamp DNA mini kit.

value: chromophobe rcc

source_name: Male DNA control provided in SureTag Labeling kit

value: commercial DNA from cell lines


title: Inactive_2

value: M

tag: fever

tag: rash

tag: arthritis


title: 194882

source_name: Female DNA control provided in SureTag Labeling kit


title: Control_11

value: Control


title: Inactive_1

tag: hepatosplenomegaly

tag: lymphoadenopathy

tag: wbc


title: WHEL ID 1385

description:
NanoString reporter probe
X2895390521_5


title: Control_7


title: Control_9


title: Control_8


title: WHEL ID 3229

description:
NanoString reporter probe
X2895390522_6


title: WHEL ID 5417

description:
NanoString reporter probe
X2895390520_4


title: Control_4


title: Control_10


title: WHEL ID 5394

description:
NanoString reporter probe
X2895390519_3


title: Control_5


title: WHEL ID 3226

description:
NanoString reporter probe
X2895390514_10


title: WHEL ID 7348

description:
NanoString reporter probe
X2895390516_12


title: WHEL ID 3231

description:
NanoString reporter probe
X2895390517_1


title: WHEL ID 13025

description:
NanoString reporter probe
X2895390513_9


title: WHEL ID 5392

description:
NanoString reporter probe
X2895390512_8


title: WHEL ID 1359

description:
NanoString reporter probe
X2895390511_7


title: Control_2


title: Control_3


title: Active_16

value: Active

value: Y

tag: hemoglobin

tag: platelets


title: WHEL ID 1181

description:
NanoString reporter probe
X2895390510_6


title: Control_1


title: WHEL ID 13047

description:
NanoString reporter probe
X2895390509_5


title: WHEL ID 13116

description:
NanoString reporter probe
X2895390508_4


title: Inactive_6

tag: ferritin (ng/ml)


title: Active_14

tag: esr

tag: sil2r (pg/ml)


title: WHEL ID 11158

description:
NanoString reporter probe
X2895390507_2

tag: tissue


title: WHEL ID 9301

description:
NanoString reporter probe
X2895390506_1


title: Active_13

tag: Sex


title: Active_10

tag: crp


title: Active_12

tag: batch


title: Active_11

tag: sample type

value: NOS


title: Active_9

tag: age


title: Active_8


title: WHEL ID 5300

description:
NanoString reporter probe
X2895390503_10


title: WHEL ID 5371

description:
NanoString reporter probe
X2895390501_8


title: WHEL ID 5398

description:
NanoString reporter probe
X2895390505_3


title: WHEL ID 5368

description:
NanoString reporter probe
X2895390502_9


title: Active_6

tag: fever


title: WHEL ID 13055

description:
NanoString reporter probe
X2895390500_7


title: WHEL ID 5389

description:
NanoString reporter probe
X2895390499_6


title: Active_7

tag: rash


title: Control_6


title: WHEL ID 1316

description:
NanoString reporter probe
X2895390504_11


title: Active_5

tag: arthritis


title: WHEL ID 9142

description:
NanoString reporter probe
X2895390498_5


title: WHEL ID 7282

description:
NanoString reporter probe
X2895390497_3


title: Active_2

value: NOS/MAS

tag: hepatosplenomegaly


title: Active_3

tag: lymphoadenopathy


title: WHEL ID 1329

description:
NanoString reporter probe
X2895390495_1


title: Active_1

tag: wbc


title: WHEL ID 7205

description:
NanoString reporter probe
X2895390494_12


title: Active_15

tag: hemoglobin


title: set4_undepleted

city: Baltimore

first: Boris

last: Zinshteyn

state: Maryland

address: 725 N Wolfe St, PCTB 714

department: Molecular Biology and Genetics

institute: Johns Hopkins University School of Medicine

description:
set4_undepleted
processed data file: set4_CDS_counts.tsv
processed data file: set4_CDS_rpms.tsv

data_processing:
Base calling was performed at Johns Hopkins core facilities with CASAVA 1.8
5 prime ends of reads were trimmed using seqtk removing 4 nucleotides of degenerate RT primer sequence (RNNNAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGC/iSP18/TTCAGACGTGTGCTCTTCCGATCTGTCCTTGGTGCCCGAGTG)
Linker sequence (NNNNNNCACTCGGGCACCAAGGAC) was trimmed using Skewer
reads aligning to phiX and non-coding RNA sequences including rRNA and tRNA were depleted using STAR
remaining reads were aligned to the human genome using STAR
Genome_build: GRCh38 (hg38), Gencode release 30
Supplementary_files_format_and_content: Count and RPM (reads per million) tables for ribosome profiling samples

source_name: HEK293FT cells

growth_protocol: HEK Cells were grown in DMEM with 10% FBS to ~75% confluency before harvest, K562 Cells were grown in RPMI with 10% FBS to 500,000 cells/ml for harvest.

extract_protocol:
Cells were lysed on ice in the presence of cycloheximide. Lysates were clarified by centrifugation. For ribosome profiling, monosomes were generated by RNaseI digest followed by ultracentrifugation.
For ribosome profiling, fragments ranging from 15-34 nt were gel purified. rRNA depletion was performed with the kit indicated at the step indicated. Upon dephosphorylation of sample RNA, the linker was ligated. This was followed by reverse transcription and gel purification. Libraries were then circularized, PCR-amplified, and gel-purified cDNA was submitted for sequencing.

tag: cell line

tag: depletion strategy

value: undepleted

tag: sizes selected (nt)

tag: adapter

value: NNNNNNCACTCGGGCACCAAGGAC

tag: depletion step

tag: molecule subtype

value: Ribosome Protected mRNA (15-35 nt)


title: set4_oligo_depletion

description:
set4_oligo_depletion
processed data file: set4_CDS_counts.tsv
processed data file: set4_CDS_rpms.tsv

value: custom oligos


title: set3_undepleted_2

description:
set3_undepleted_2
processed data file: set3_CDS_counts.tsv
processed data file: set3_CDS_rpms.tsv

source_name: K562 cells


title: set3_undepleted_1

description:
set3_undepleted_1
processed data file: set3_CDS_counts.tsv
processed data file: set3_CDS_rpms.tsv


title: set3_ribozero_p_of

description:
set3_ribozero_p_of
processed data file: set3_CDS_counts.tsv
processed data file: set3_CDS_rpms.tsv

value: ribo-zero plus, oligos, formaldehyde


title: set3_ribozero_p_o

description:
set3_ribozero_p_o
processed data file: set3_CDS_counts.tsv
processed data file: set3_CDS_rpms.tsv

value: ribo-zero plus, oligos


title: WHEL ID 7356

description:
NanoString reporter probe
X2895390491_9

tag: tissue

value: primary breast cancer


title: WHEL ID 9141

description:
NanoString reporter probe
X2895390490_7


title: WHEL ID 13097

description:
NanoString reporter probe
X2895390489_6


title: Active_4

tag: batch

tag: Sex

value: N

tag: platelets

tag: esr

tag: crp

tag: ferritin (ng/ml)


title: WHEL ID 7287

description:
NanoString reporter probe
X2895390487_4


title: WHEL ID 9249

description:
NanoString reporter probe
X2895390485_2


title: set3_ribozero_p

description:
set3_ribozero_p
processed data file: set3_CDS_counts.tsv
processed data file: set3_CDS_rpms.tsv

value: ribo-zero plus


title: set3_ribozero_p_f

description:
set3_ribozero_p_f
processed data file: set3_CDS_counts.tsv
processed data file: set3_CDS_rpms.tsv

value: ribo-zero plus, formaldehyde


title: WHEL ID 9281

description:
NanoString reporter probe
X2895390496_2


title: WHEL ID 9222

description:
NanoString reporter probe
X2895390493_11


title: set3_ribopools_2

description:
set3_ribopools_2
processed data file: set3_CDS_counts.tsv
processed data file: set3_CDS_rpms.tsv

value: ribopools


title: WHEL ID 7380

description:
NanoString reporter probe
X2895390488_5


title: set3_ribopools_no_heat_1

description:
set3_ribopools_no_heat_1
processed data file: set3_CDS_counts.tsv
processed data file: set3_CDS_rpms.tsv

value: ribopools, cold elution


title: WHEL ID 11211

description:
NanoString reporter probe
X2895390492_10


title: WHEL ID 13102

description:
NanoString reporter probe
X2895390486_7


title: set3_ribopools_1

description:
set3_ribopools_1
processed data file: set3_CDS_counts.tsv
processed data file: set3_CDS_rpms.tsv


title: WHEL ID 9373

description:
NanoString reporter probe
X2895390484_1


title: WHEL ID 9227

description:
NanoString reporter probe
X2895390482_11


title: WHEL ID 7330

description:
NanoString reporter probe
X2895390483_12


title: WHEL ID 9197

description:
NanoString reporter probe
X2895390481_10


title: WHEL ID 5321

description:
NanoString reporter probe
X2895390480_9


title: set3_qiagen_fastselect_2

description:
set3_qiagen_fastselect_2
processed data file: set3_CDS_counts.tsv
processed data file: set3_CDS_rpms.tsv

value: qiagen fastselect


title: set3_qiagen_fastselect_1

description:
set3_qiagen_fastselect_1
processed data file: set3_CDS_counts.tsv
processed data file: set3_CDS_rpms.tsv


title: set2_undepleted_20_60

description:
set2_undepleted_20_60
processed data file: set2_CDS_counts.tsv
processed data file: set2_CDS_rpms.tsv

value: NEBNExt


title: WHEL ID 7004

description:
NanoString reporter probe
X2895390478_7


title: set3_ribopools_no_heat_2

description:
set3_ribopools_no_heat_2
processed data file: set3_CDS_counts.tsv
processed data file: set3_CDS_rpms.tsv


title: set2_NEBNext_20_60

description:
set2_NEBNext_20_60
processed data file: set2_CDS_counts.tsv
processed data file: set2_CDS_rpms.tsv


title: WHEL ID 7010

description:
NanoString reporter probe
X2895390476_4


title: set2_NEBNext_20_34

description:
set2_NEBNext_20_34
processed data file: set2_CDS_counts.tsv
processed data file: set2_CDS_rpms.tsv


title: WHEL ID 7054

description:
NanoString reporter probe
X2895390477_5


title: WHEL ID 7135

description:
NanoString reporter probe
X2895390479_8


title: set1_2B_riboZero

description:
set1_2B_riboZero_ATTCGG
processed data file: set1_CDS_counts.tsv
processed data file: set1_CDS_rpms.tsv

source_name: HEK293T cells

value: legacy riboZero gold


title: set1_2C_riboCop

description:
set1_2C_riboCop_CGAATC
processed data file: set1_CDS_counts.tsv
processed data file: set1_CDS_rpms.tsv

value: riboCop


title: WHEL ID 7099

description:
NanoString reporter probe
X2895390474_2


title: WHEL ID 7162

description:
NanoString reporter probe
X2895390473_1


title: set1_2D_NEB

description:
set1_2D_NEB_GCCTAA
processed data file: set1_CDS_counts.tsv
processed data file: set1_CDS_rpms.tsv


title: WHEL ID 9160

description:
NanoString reporter probe
X2895390475_3


title: set1_2A_noDep

description:
set1_2A_noDep_TAGGCT
processed data file: set1_CDS_counts.tsv
processed data file: set1_CDS_rpms.tsv


title: WHEL ID 7084

description:
NanoString reporter probe
X2895390471_11


title: WHEL ID 5464

description:
NanoString reporter probe
X2895390472_12


title: WHEL ID 1315

description:
NanoString reporter probe
X2895390467_7


title: set1_1D_NEB

description:
set1_1D_NEB_TCGTCA
processed data file: set1_CDS_counts.tsv
processed data file: set1_CDS_rpms.tsv


title: WHEL ID 3169

description:
NanoString reporter probe
X2895390470_10


title: set1_1C_riboCop

description:
set1_1C_riboCop_GGCAAC
processed data file: set1_CDS_counts.tsv
processed data file: set1_CDS_rpms.tsv


title: set1_1B_riboZero

description:
set1_1B_riboZero_CTACTG
processed data file: set1_CDS_counts.tsv
processed data file: set1_CDS_rpms.tsv


title: WHEL ID 13190

description:
NanoString reporter probe
X2895390465_5


title: WHEL ID 3303

description:
NanoString reporter probe
X2895390468_8


title: set2_undepleted_20_34

description:
set2_undepleted_20_34
processed data file: set2_CDS_counts.tsv
processed data file: set2_CDS_rpms.tsv


title: WHEL ID 13195

description:
NanoString reporter probe
X2895390466_6


title: WHEL ID 13193

description:
NanoString reporter probe
X2895390461_12


title: WHEL ID 13093

description:
NanoString reporter probe
X2895390460_11


title: WHEL ID 13075

description:
NanoString reporter probe
X2895390462_1


title: WHEL ID 1296

description:
NanoString reporter probe
X2895390463_3


title: WHEL ID 3261

description:
NanoString reporter probe
X2895390469_9


title: WHEL ID 7252

description:
NanoString reporter probe
X2895390459_10


title: WHEL ID 13098

description:
NanoString reporter probe
X2895390456_7


title: WHEL ID 13161

description:
NanoString reporter probe
X2895390458_9


title: WHEL ID 13076

description:
NanoString reporter probe
X2895390457_8


title: WHEL ID 13170

description:
NanoString reporter probe
X2895390455_6


title: WHEL ID 13094

description:
NanoString reporter probe
X2895390454_5


title: WHEL ID 13079

description:
NanoString reporter probe
X2895390452_3


title: WHEL ID 13070

description:
NanoString reporter probe
X2895390453_4


title: WHEL ID 1396

description:
NanoString reporter probe
X2895390449_10


title: set1_1A_noDep

description:
set1_1A_noDep_AATGGT
processed data file: set1_CDS_counts.tsv
processed data file: set1_CDS_rpms.tsv

value: after ligation


title: WHEL ID 13111

description:
NanoString reporter probe
X2895390451_1


title: WHEL ID 1518

description:
NanoString reporter probe
X2895390450_11


title: WHEL ID 13245

description:
NanoString reporter probe
X2895390464_4


title: WHEL ID 1352

description:
NanoString reporter probe
X2895390445_6


title: WHEL ID 1514

description:
NanoString reporter probe
X2895390442_3


title: WHEL ID 1409

description:
NanoString reporter probe
X2895390448_9


title: WHEL ID 1502

description:
NanoString reporter probe
X2895390441_2


title: WHEL ID 1312

description:
NanoString reporter probe
X2895390447_8


title: WHEL ID 1519

description:
NanoString reporter probe
X2895390443_4


title: WHEL ID 13187

description:
NanoString reporter probe
X2895390446_7


title: WHEL ID 1503

description:
NanoString reporter probe
X2895390444_5


title: WHEL ID 13026

description:
NanoString reporter probe
X2895390440_1


title: WHEL ID 13033

description:
NanoString reporter probe
X2895390435_11


title: WHEL ID 1168

description:
NanoString reporter probe
X2895390437_10


title: WHEL ID 13024

description:
NanoString reporter probe
X2895390434_10


title: WHEL ID 1508

description:
NanoString reporter probe
X2895390431_7


title: WHEL ID 13069

description:
NanoString reporter probe
X2895390432_6


title: WHEL ID 1175

description:
NanoString reporter probe
X2895390436_12


title: WHEL ID 1195

description:
NanoString reporter probe
X2895390427_2


title: WHEL ID 13029

description:
NanoString reporter probe
X2895390439_8


title: WHEL ID 13183

description:
NanoString reporter probe
X2895390428_3


title: WHEL ID 1251

description:
NanoString reporter probe
X2895390433_9


title: WHEL ID 13107

description:
NanoString reporter probe
X2895390438_1


title: WHEL ID 11077

description:
NanoString reporter probe
X2895390423_4


title: WHEL ID 13066

description:
NanoString reporter probe
X2895390430_5


title: WHEL ID 9259

description:
NanoString reporter probe
X2895390422_9


title: WHEL ID 11146

description:
NanoString reporter probe
X2895390429_4


title: WHEL ID 1521

description:
NanoString reporter probe
X2895390421_8


title: WHEL ID 1546

description:
NanoString reporter probe
X2895390418_4


title: WHEL ID 11128

description:
NanoString reporter probe
X2895390420_6


title: WHEL ID 1208

description:
NanoString reporter probe
X2895390417_3


title: WHEL ID 1543

description:
NanoString reporter probe
X2895390413_10


title: WHEL ID 1469

description:
NanoString reporter probe
X2895390415_1


title: WHEL ID 1492

description:
NanoString reporter probe
X2895390414_11


title: WHEL ID 11031

description:
NanoString reporter probe
X2895390419_5


title: WHEL ID 11394

description:
NanoString reporter probe
X2895390425_12


title: WHEL ID 1534

description:
NanoString reporter probe
X2895390412_9


title: WHEL ID 1533

description:
NanoString reporter probe
X2895390411_8


title: WHEL ID 1523

description:
NanoString reporter probe
X2895390409_6


title: WHEL ID 1506

description:
NanoString reporter probe
X2895390410_7


title: WHEL ID 1060

description:
NanoString reporter probe
X2895390424_11


title: WHEL ID 9305

description:
NanoString reporter probe
X2895390426_5


title: WHEL ID 1538

description:
NanoString reporter probe
X2895390408_5


title: WHEL ID 1536

description:
NanoString reporter probe
X2895390404_12


title: Major Depressive Disorder MDD197

city: Rotterdam

first: Hemmo

last: Drexhage

address: Dr Molewaterplein 40

department: Immunology

country: Netherlands

institute: Erasmus MC

description: Test

data_processing:
Matrix normalized worksheet report normalized signal against housekeeping gene ABL1:(Ct_Target − Ct_ABL1)
Fold Change worksheet report relative signal to the average healthy control value: (dCT- AVG dCT Healthy Controls)
ddCT (relative values)

label: FAM

source_name: Monocytes

label_protocol: 1 ug RNA was converted into cDNA using the High Capacity cDNA synthesis kit (Applied Biosystems)

extract_protocol: Total RNA was extracted using QIAgen Rneasy Mini kit

tag: sex (0=m)

tag: group (0=control)

tag: age

tag: bmi

tag: episodes

tag: ctanysubscale (0=no)

tag: ctqemoabuse

tag: ctqphyabuse

tag: ctqsexabuse

tag: ctqemoneglect

tag: ctqphyneglect


title: Major Depressive Disorder MDD196

description: Test

value: MEDIUM

value: NO


title: WHEL ID 1544

description:
NanoString reporter probe
X2895390403_11

tag: tissue


title: Major Depressive Disorder MDD194

description: Test


title: Major Depressive Disorder MDD195

description: Test


title: Major Depressive Disorder MDD193

description: Test


title: Major Depressive Disorder MDD192

description: Test


title: WHEL ID 1530

description:
NanoString reporter probe
X2895390416_2


title: WHEL ID 1511

description:
NanoString reporter probe
X2895390402_10


title: WHEL ID 1407

description:
NanoString reporter probe
X2895390401_9


title: Major Depressive Disorder MDD191

description: Test


title: Major Depressive Disorder MDD190

description: Test


title: WHEL ID 1513

description:
NanoString reporter probe
X2895390398_6


title: Major Depressive Disorder MDD188

description: Test


title: Major Depressive Disorder MDD189

description: Test

value: PAST


title: WHEL ID 1165

description:
NanoString reporter probe
X2895390397_5


title: WHEL ID 1522

description:
NanoString reporter probe
X2895390399_7


title: WHEL ID 1266

description:
NanoString reporter probe
X2895390400_8


title: WHEL ID 1510

description:
NanoString reporter probe
X2895390407_4


title: WHEL ID 1399

description:
NanoString reporter probe
X2895390523_7


title: WHEL ID 1516

description:
NanoString reporter probe
X2895390406_2


title: WHEL ID 1525

description:
NanoString reporter probe
X2895390396_3


title: WHEL ID 1378

description:
NanoString reporter probe
X2895390394_1


title: Major Depressive Disorder MDD185

description: Test

value: LOW


title: WHEL ID 1265

description:
NanoString reporter probe
X2895390395_2


title: Major Depressive Disorder MDD184

description: Test

value: HIGH

value: YES


title: WHEL ID 1323

description:
NanoString reporter probe
X2895390393_12

value: primary breast cancer


title: Major Depressive Disorder MDD183

description: Test


title: WHEL ID 1551

description:
NanoString reporter probe
X2895390391_10


title: Major Depressive Disorder MDD179

description: Test


title: Major Depressive Disorder MDD180

description: Test


title: WHEL ID 1200

description:
NanoString reporter probe
X2895390389_7


title: WHEL ID 1290

description:
NanoString reporter probe
X2895390390_8


title: Major Depressive Disorder MDD181

description: Test


title: Major Depressive Disorder MDD187

description: Test


title: Major Depressive Disorder MDD186

description: Test


title: WHEL ID 3392

description:
NanoString reporter probe
X2895390388_6


title: WHEL ID 13005

description:
NanoString reporter probe
X2895390386_4


title: Major Depressive Disorder MDD177

description: Test


title: Major Depressive Disorder MDD176

description: Test


title: WHEL ID 5247

description:
NanoString reporter probe
X2895390384_2


title: Major Depressive Disorder MDD175

description: Test


title: Major Depressive Disorder MDD173

description: Test


title: Major Depressive Disorder MDD172

description: Test


title: Major Depressive Disorder MDD174

description: Test


title: Major Depressive Disorder MDD182

description: Test


title: WHEL ID 13007

description:
NanoString reporter probe
X2895390383_1


title: WHEL ID 11277

description:
NanoString reporter probe
X2895390380_9


title: WHEL ID 1304

description:
NanoString reporter probe
X2895390392_11


title: WHEL ID 3085

description:
NanoString reporter probe
X2895390382_11


title: WHEL ID 11123

description:
NanoString reporter probe
X2895390381_10


title: Major Depressive Disorder MDD170

description: Test


title: WHEL ID 3155

description:
NanoString reporter probe
X2895390387_5


title: WHEL ID 3353

description:
NanoString reporter probe
X2895390379_8


title: Major Depressive Disorder MDD169

description: Test


title: Major Depressive Disorder MDD178

description: Test


title: WHEL ID 11147

description:
NanoString reporter probe
X2895390378_7


title: WHEL ID 11131

description:
NanoString reporter probe
X2895390376_5


title: WHEL ID 11153

description:
NanoString reporter probe
X2895390377_6


title: Major Depressive Disorder MDD166

description: Test


title: Major Depressive Disorder MDD168

description: Test


title: Major Depressive Disorder MDD167

description: Test


title: WHEL ID 9191

description:
NanoString reporter probe
X2895390385_3


title: WHEL ID 11002

description:
NanoString reporter probe
X2895390375_4


title: Major Depressive Disorder MDD165

description: Test


title: WHEL ID 11025

description:
NanoString reporter probe
X2895390374_3


title: Major Depressive Disorder MDD171

description: Test


title: WHEL ID 11037

description:
NanoString reporter probe
X2895390373_2


title: Major Depressive Disorder MDD164

description: Test


title: Major Depressive Disorder MDD162

description: Test


title: Major Depressive Disorder MDD161

description: Test


title: Major Depressive Disorder MDD160

description: Test


title: WHEL ID 5359

description:
NanoString reporter probe
X2895390371_12


title: WHEL ID 11363

description:
NanoString reporter probe
X2895390369_10


title: Major Depressive Disorder MDD159

description: Test


title: WHEL ID 9144

description:
NanoString reporter probe
X2895390367_8


title: WHEL ID 9471

description:
NanoString reporter probe
X2895390368_9


title: Major Depressive Disorder MDD158

description: Test


title: Major Depressive Disorder MDD156

description: Test


title: WHEL ID 5372

description:
NanoString reporter probe
X2895390366_7


title: WHEL ID 9173

description:
NanoString reporter probe
X2895390365_6


title: Major Depressive Disorder MDD157

description: Test


title: WHEL ID 7173

description:
NanoString reporter probe
X2895390362_2


title: WHEL ID 5377

description:
NanoString reporter probe
X2895390363_3


title: Major Depressive Disorder MDD155

description: Test


title: WHEL ID 13181

description:
NanoString reporter probe
X2895390372_1


title: WHEL ID 7221

description:
NanoString reporter probe
X2895390361_1


title: Major Depressive Disorder MDD153

description: Test


title: Major Depressive Disorder MDD152

description: Test


title: Major Depressive Disorder MDD154

description: Test


title: Major Depressive Disorder MDD151

description: Test


title: WHEL ID 1410

description:
NanoString reporter probe
X2895390370_11


title: Major Depressive Disorder MDD163

description: Test


title: Major Depressive Disorder MDD150

description: Test


title: WHEL ID 7237

description:
NanoString reporter probe
X2895390360_12


title: WHEL ID 3128

description:
NanoString reporter probe
X2895390359_11


title: WHEL ID 13126

description:
NanoString reporter probe
X2895390358_10


title: Major Depressive Disorder MDD149

description: Test


title: WHEL ID 7151

description:
NanoString reporter probe
X2895390356_8


title: WHEL ID 13123

description:
NanoString reporter probe
X2895390364_4


title: WHEL ID 7254

description:
NanoString reporter probe
X2895390355_7


title: Major Depressive Disorder MDD148

description: Test


title: Major Depressive Disorder MDD147

description: Test


title: WHEL ID 13124

description:
NanoString reporter probe
X2895390354_6


title: Major Depressive Disorder MDD143

description: Test


title: Major Depressive Disorder MDD144

description: Test


title: Major Depressive Disorder MDD146

description: Test


title: WHEL ID 7168

description:
NanoString reporter probe
X2895390352_4


title: Major Depressive Disorder MDD142

description: Test


title: WHEL ID 3339

description:
NanoString reporter probe
X2895390351_3


title: Major Depressive Disorder MDD141

description: Test


title: WHEL ID 7226

description:
NanoString reporter probe
X2895390350_2


title: Major Depressive Disorder MDD145

description: Test


title: WHEL ID 13127

description:
NanoString reporter probe
X2895390349_12


title: Major Depressive Disorder MDD138

description: Test


title: WHEL ID 13120

description:
NanoString reporter probe
X2895390345_7


title: Major Depressive Disorder MDD139

description: Test


title: WHEL ID 7204

description:
NanoString reporter probe
X2895390347_9


title: WHEL ID 7192

description:
NanoString reporter probe
X2895390357_9


title: WHEL ID 5410

description:
NanoString reporter probe
X2895390344_6


title: Major Depressive Disorder MDD140

description: Test


title: Major Depressive Disorder MDD137

description: Test


title: Major Depressive Disorder MDD136

description: Test


title: Major Depressive Disorder MDD135

description: Test


title: Major Depressive Disorder MDD134

description: Test


title: WHEL ID 7130

description:
NanoString reporter probe
X2895390343_5


title: WHEL ID 13117

description:
NanoString reporter probe
X2895390342_4


title: WHEL ID 7264

description:
NanoString reporter probe
X2895390353_5


title: WHEL ID 7153

description:
NanoString reporter probe
X2895390340_2


title: Major Depressive Disorder MDD132

description: Test


title: Major Depressive Disorder MDD133

description: Test


title: WHEL ID 1228

description:
NanoString reporter probe
X2895390341_3


title: Major Depressive Disorder MDD130

description: Test


title: Major Depressive Disorder MDD129

description: Test


title: WHEL ID 9055

description:
NanoString reporter probe
X2895390339_2


title: WHEL ID 5044

description:
NanoString reporter probe
X2895390338_1


title: WHEL ID 7181

description:
NanoString reporter probe
X2895390348_10


title: Major Depressive Disorder MDD128

description: Test


title: WHEL ID 1049

description:
NanoString reporter probe
X2895390337_12


title: WHEL ID 3028

description:
NanoString reporter probe
X2895390335_10


title: Major Depressive Disorder MDD127

description: Test


title: Major Depressive Disorder MDD131

description: Test


title: Major Depressive Disorder MDD126

description: Test


title: WHEL ID 5057

description:
NanoString reporter probe
X2895390336_11


title: WHEL ID 3024

description:
NanoString reporter probe
X2895390333_8


title: WHEL ID 1017

description:
NanoString reporter probe
X2895390334_9


title: Major Depressive Disorder MDD125

description: Test


title: WHEL ID 1002

description:
NanoString reporter probe
X2895390332_7


title: Major Depressive Disorder MDD124

description: Test


title: WHEL ID 1018

description:
NanoString reporter probe
X2895390331_6


title: Major Depressive Disorder MDD123

description: Test


title: WHEL ID 9056

description:
NanoString reporter probe
X2895390330_5


title: Major Depressive Disorder MDD120

description: Test


title: Major Depressive Disorder MDD121

description: Test


title: WHEL ID 1031

description:
NanoString reporter probe
X2895390329_4


title: Major Depressive Disorder MDD122

description: Test


title: Major Depressive Disorder MDD119

description: Test


title: Major Depressive Disorder MDD118

description: Test


title: WHEL ID 9038

description:
NanoString reporter probe
X2895390328_3


title: WHEL ID 5055

description:
NanoString reporter probe
X2895390326_12


title: WHEL ID 5042

description:
NanoString reporter probe
X2895390327_1


title: Major Depressive Disorder MDD117

description: Test


title: WHEL ID 9031

description:
NanoString reporter probe
X2895390325_11


title: Major Depressive Disorder MDD115

description: Test


title: WHEL ID 3031

description:
NanoString reporter probe
X2895390324_10


title: Major Depressive Disorder MDD116

description: Test


title: WHEL ID 1043

description:
NanoString reporter probe
X2895390323_9


title: WHEL ID 5070

description:
NanoString reporter probe
X2895390322_8


title: Major Depressive Disorder MDD112

description: Test


title: Major Depressive Disorder MDD113

description: Test


title: WHEL ID 5067

description:
NanoString reporter probe
X2895390321_6


title: Major Depressive Disorder MDD114

description: Test


title: WHEL ID 5025

description:
NanoString reporter probe
X2895390320_5


title: Major Depressive Disorder MDD111

description: Test


title: Healthy Control with CA C151

description: Test


title: WHEL ID 1080

description:
NanoString reporter probe
X2895390319_4


title: WHEL ID 7213

description:
NanoString reporter probe
X2895390318_3


title: Healthy Control with CA C150

description: Test


title: Healthy Control with CA C149

description: Test


title: Healthy Control with CA C148

description: Test


title: WHEL ID 1192

description:
NanoString reporter probe
X2895390317_2


title: Healthy Control with CA C147

description: Test


title: WHEL ID 3029

description:
NanoString reporter probe
X2895390314_11


title: Healthy Control with CA C146

description: Test


title: Healthy Control with CA C144

description: Test


title: Healthy Control with CA C145

description: Test


title: WHEL ID 3022

description:
NanoString reporter probe
X2895390311_8


title: WHEL ID 1076

description:
NanoString reporter probe
X2895390312_9


title: WHEL ID 1057

description:
NanoString reporter probe
X2895390315_12


title: WHEL ID 1054

description:
NanoString reporter probe
X2895390313_10


title: Healthy Control with CA C142

description: Test


title: WHEL ID 1052

description:
NanoString reporter probe
X2895390310_7


title: WHEL ID 1075

description:
NanoString reporter probe
X2895390308_5


title: WHEL ID 1048

description:
NanoString reporter probe
X2895390316_1


title: WHEL ID 1078

description:
NanoString reporter probe
X2895390309_6


title: Healthy Control with CA C143

description: Test


title: WHEL ID 3041

description:
NanoString reporter probe
X2895390306_2


title: Healthy Control with CA C139

description: Test


title: WHEL ID 9023

description:
NanoString reporter probe
X2895390305_1


title: Healthy Control with CA C138

description: Test


title: WHEL ID 1072

description:
NanoString reporter probe
X2895390307_3


title: Healthy Control with CA C137

description: Test


title: Healthy Control with CA C140

description: Test


title: Healthy Control with CA C136

description: Test


title: WHEL ID 9003

description:
NanoString reporter probe
X2895390303_11


title: WHEL ID 9009

description:
NanoString reporter probe
X2895390304_12


title: Healthy Control with CA C135

description: Test


title: WHEL ID 9004

description:
NanoString reporter probe
X2895390302_10


title: WHEL ID 9021

description:
NanoString reporter probe
X2895390301_9


title: Healthy Control with CA C132

description: Test


title: WHEL ID 9024

description:
NanoString reporter probe
X2895390300_8


title: WHEL ID 9037

description:
NanoString reporter probe
X2895390299_7


title: Healthy Control with CA C133

description: Test


title: Healthy Control with CA C141

description: Test


title: Healthy Control with CA C130

description: Test


title: Healthy Control with CA C129

description: Test


title: WHEL ID 9017

description:
NanoString reporter probe
X2895390298_6


title: WHEL ID 5043

description:
NanoString reporter probe
X2895390296_4


title: WHEL ID 5019

description:
NanoString reporter probe
X2895390295_2


title: WHEL ID 5012

description:
NanoString reporter probe
X2895390294_1


title: Healthy Control without CA C127

description: Control 3


title: Healthy Control without CA C128

description: Control 3


title: WHEL ID 9001

description:
NanoString reporter probe
X2895390292_11


title: WHEL ID 5045

description:
NanoString reporter probe
X2895390293_12


title: Healthy Control without CA C123

description: Control 3


title: Healthy Control without CA C124

description: Control 3


title: WHEL ID 5026

description:
NanoString reporter probe
X2895390290_8


title: Healthy Control without CA C125

description: Control 3


title: WHEL ID 5036

description:
NanoString reporter probe
X2895390291_9


title: Healthy Control with CA C134

description: Test


title: Healthy Control without CA C121

description: Control 3


title: Healthy Control without CA C122

description: Control 3


title: Healthy Control with CA C131

description: Test


title: WHEL ID 5016

description:
NanoString reporter probe
X2895390297_5


title: WHEL ID 5039

description:
NanoString reporter probe
X2895390289_7


title: Healthy Control without CA C120

description: Control 3


title: WHEL ID 3014

description:
NanoString reporter probe
X2895390234_2


title: WHEL ID 5035

description:
NanoString reporter probe
X2895390288_6


title: WHEL ID 3015

description:
NanoString reporter probe
X2895390235_3


title: Healthy Control without CA C119

description: Control 3


title: Healthy Control without CA C117

description: Control 3


title: WHEL ID 5017

description:
NanoString reporter probe
X2895390287_5


title: Healthy Control without CA C126

description: Control 3


title: Healthy Control without CA C118

description: Control 3


title: WHEL ID 3011

description:
NanoString reporter probe
X2895390231_11


title: WHEL ID 5007

description:
NanoString reporter probe
X2895390232_12


title: Healthy Control without CA C116

description: Control 3


title: Healthy Control without CA C114

description: Control 3


title: WHEL ID 5010

description:
NanoString reporter probe
X2895390230_10


title: Healthy Control without CA C113

description: Control 3


title: WHEL ID 5008

description:
NanoString reporter probe
X2895390229_9


title: Healthy Control without CA C110

description: Control 3


title: Healthy Control without CA C111

description: Control 3


title: Healthy Control without CA C112

description: Control 3


title: Healthy Control without CA C115

description: Control 3


title: Healthy Control without CA C109

description: Control 3


title: WHEL ID 5009

description:
NanoString reporter probe
X2895390226_5


title: WHEL ID 5001

description:
NanoString reporter probe
X2895390227_7


title: WHEL ID 5003

description:
NanoString reporter probe
X2895390233_1


title: WHEL ID 1067

description:
NanoString reporter probe
X2895390224_3


title: Healthy Control without CA C107

description: Control 3


title: WHEL ID 1040

description:
NanoString reporter probe
X2895390222_1


title: Healthy Control without CA C105

description: Control 3


title: Healthy Control without CA C106

description: Control 3


title: WHEL ID 1063

description:
NanoString reporter probe
X2895390220_11


title: Healthy Control without CA C104

description: Control 3


title: WHEL ID 1046

description:
NanoString reporter probe
X2895390223_2


title: WHEL ID 5006

description:
NanoString reporter probe
X2895390228_8


title: Major Depressive Disorder MDD110

description:
Major Depressive Disorder
Test


title: Healthy Control without CA C103

description: Control 3


title: WHEL ID 1062

description:
NanoString reporter probe
X2895390218_9


title: WHEL ID 3007

description:
NanoString reporter probe
X2895390219_10


title: Major Depressive Disorder MDD108

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD109

description:
Major Depressive Disorder
Test


title: WHEL ID 1050

description:
NanoString reporter probe
X2895390217_8


title: WHEL ID 1035

description:
NanoString reporter probe
X2895390216_7


title: WHEL ID 3004

description:
NanoString reporter probe
X2895390225_4


title: Healthy Control without CA C108

description: Control 3


title: WHEL ID 1037

description:
NanoString reporter probe
X2895390215_6


title: Major Depressive Disorder MDD106

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD104

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD107

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD103

description:
Major Depressive Disorder
Test


title: WHEL ID 1032

description:
NanoString reporter probe
X2895390214_5


title: WHEL ID 1039

description:
NanoString reporter probe
X2895390212_3


title: WHEL ID 1029

description:
NanoString reporter probe
X2895390213_4


title: WHEL ID 1045

description:
NanoString reporter probe
X2895390221_12


title: WHEL ID 1022

description:
NanoString reporter probe
X2895390211_2


title: Major Depressive Disorder MDD105

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD102

description:
Major Depressive Disorder
Test


title: WHEL ID 1005

description:
NanoString reporter probe
X2895390210_1


title: Major Depressive Disorder MDD099

description:
Major Depressive Disorder
Test


title: WHEL ID 13119

description:
NanoString reporter probe
X2895383300_11


title: WHEL ID 1231

description:
NanoString reporter probe
X2895383301_12


title: Major Depressive Disorder MDD100

description:
Major Depressive Disorder
Test


title: WHEL ID 13122

description:
NanoString reporter probe
X2895383298_9


title: Major Depressive Disorder MDD101

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD096

description:
Major Depressive Disorder
Test


title: WHEL ID 7306

description:
NanoString reporter probe
X2895383299_10


title: WHEL ID 5443

description:
NanoString reporter probe
X2895383302_1


title: Major Depressive Disorder MDD095

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD094

description:
Major Depressive Disorder
Test


title: WHEL ID 1480

description:
NanoString reporter probe
X2895383297_7


title: Major Depressive Disorder MDD098

description:
Major Depressive Disorder
Test


title: WHEL ID 5471

description:
NanoString reporter probe
X2895383295_5


title: Major Depressive Disorder MDD093

description:
Major Depressive Disorder
Test


title: WHEL ID 1400

description:
NanoString reporter probe
X2895383296_6


title: Major Depressive Disorder MDD097

description:
Major Depressive Disorder
Test


title: WHEL ID 1253

description:
NanoString reporter probe
X2895383294_4


title: Major Depressive Disorder MDD091

description:
Major Depressive Disorder
Test


title: WHEL ID 11210

description:
NanoString reporter probe
X2895383291_1


title: Major Depressive Disorder MDD088

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD089

description:
Major Depressive Disorder
Test


title: WHEL ID 9381

description:
NanoString reporter probe
X2895383293_3


title: WHEL ID 9220

description:
NanoString reporter probe
X2895383290_12


title: WHEL ID 7379

description:
NanoString reporter probe
X2895383289_11


title: WHEL ID 7290

description:
NanoString reporter probe
X2895383288_10


title: Major Depressive Disorder MDD087

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD085

description:
Major Depressive Disorder
Test


title: WHEL ID 3030

description:
NanoString reporter probe
X2895383287_9


title: WHEL ID 3110

description:
NanoString reporter probe
X2895383286_8


title: WHEL ID 1416

description:
NanoString reporter probe
X2895383285_7


title: Major Depressive Disorder MDD086

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD083

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD084

description:
Major Depressive Disorder
Test


title: WHEL ID 11241

description:
NanoString reporter probe
X2895383283_4


title: WHEL ID 3318

description:
NanoString reporter probe
X2895383282_3


title: Major Depressive Disorder MDD082

description:
Major Depressive Disorder
Test


title: WHEL ID 1425

description:
NanoString reporter probe
X2895383284_6


title: Major Depressive Disorder MDD081

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD090

description:
Major Depressive Disorder
Test


title: WHEL ID 1417

description:
NanoString reporter probe
X2895383280_1


title: WHEL ID 1411

description:
NanoString reporter probe
X2895383281_2


title: WHEL ID 1398

description:
NanoString reporter probe
X2895383292_2


title: Major Depressive Disorder MDD079

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD078

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD092

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD080

description:
Major Depressive Disorder
Test


title: WHEL ID 1324

description:
NanoString reporter probe
X2895383279_12


title: Major Depressive Disorder MDD076

description:
Major Depressive Disorder
Test


title: WHEL ID 3299

description:
NanoString reporter probe
X2895383278_11


title: WHEL ID 3256

description:
NanoString reporter probe
X2895383276_9


title: Major Depressive Disorder MDD074

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD075

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD073

description:
Major Depressive Disorder
Test


title: WHEL ID 3293

description:
NanoString reporter probe
X2895383275_8


title: WHEL ID 11205

description:
NanoString reporter probe
X2895383274_7


title: WHEL ID 3321

description:
NanoString reporter probe
X2895383271_3


title: Major Depressive Disorder MDD072

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD070

description:
Major Depressive Disorder
Test


title: WHEL ID 9351

description:
NanoString reporter probe
X2895383273_5


title: WHEL ID 1319

description:
NanoString reporter probe
X2895383269_1


title: Major Depressive Disorder MDD077

description:
Major Depressive Disorder
Test


title: WHEL ID 5434

description:
NanoString reporter probe
X2895383268_11


title: WHEL ID 3198

description:
NanoString reporter probe
X2895383277_10


title: Healthy Control with CA C102

description:
Healthy Control with CA
Test


title: WHEL ID 9289

description:
NanoString reporter probe
X2895383265_8


title: Major Depressive Disorder MDD071

description:
Major Depressive Disorder
Test


title: WHEL ID 5451

description:
NanoString reporter probe
X2895383272_4


title: Healthy Control with CA C096

description:
Healthy Control with CA
Test


title: WHEL ID 1386

description:
NanoString reporter probe
X2895383267_10


title: WHEL ID 9347

description:
NanoString reporter probe
X2895383266_9


title: Healthy Control with CA C099

description:
Healthy Control with CA
Test


title: Healthy Control with CA C097

description:
Healthy Control with CA
Test


title: Healthy Control with CA C100

description:
Healthy Control with CA
Test


title: Healthy Control with CA C095

description:
Healthy Control with CA
Test


title: Healthy Control with CA C094

description:
Healthy Control with CA
Test


title: Major Depressive Disorder MDD069

description:
Major Depressive Disorder
Test


title: Healthy Control without CA C093

description:
Healthy Control without CA
Control 2


title: WHEL ID 7325

description:
NanoString reporter probe
X2895383261_4


title: Healthy Control with CA C101

description:
Healthy Control with CA
Test


title: WHEL ID 11082

description:
NanoString reporter probe
X2895383260_2


title: WHEL ID 3285

description:
NanoString reporter probe
X2895383270_2


title: WHEL ID 5412

description:
NanoString reporter probe
X2895383259_1


title: Healthy Control without CA C092

description:
Healthy Control without CA
Control 2


title: Healthy Control with CA C098

description:
Healthy Control with CA
Test


title: Healthy Control without CA C091

description:
Healthy Control without CA
Control 2


title: WHEL ID 3176

description:
NanoString reporter probe
X2895383264_7


title: Healthy Control without CA C090

description:
Healthy Control without CA
Control 2


title: WHEL ID 13017

description:
NanoString reporter probe
X2895383256_9


title: WHEL ID 11079

description:
NanoString reporter probe
X2895383258_12


title: WHEL ID 7298

description:
NanoString reporter probe
X2895383255_8


title: WHEL ID 13062

description:
NanoString reporter probe
X2895383263_6


title: WHEL ID 13083

description:
NanoString reporter probe
X2895383257_11


title: WHEL ID 13021

description:
NanoString reporter probe
X2895383262_5


title: Healthy Control without CA C088

description:
Healthy Control without CA
Control 2


title: Healthy Control without CA C089

description:
Healthy Control without CA
Control 2


title: WHEL ID 13009

description:
NanoString reporter probe
X2895383254_7


title: Healthy Control without CA C086

description:
Healthy Control without CA
Control 2


title: WHEL ID 5552

description:
NanoString reporter probe
X2895383253_6


title: WHEL ID 3363

description:
NanoString reporter probe
X2895383250_3


title: Healthy Control without CA C082

description:
Healthy Control without CA
Control 2


title: Healthy Control without CA C083

description:
Healthy Control without CA
Control 2


title: Healthy Control without CA C085

description:
Healthy Control without CA
Control 2


title: Healthy Control without CA C084

description:
Healthy Control without CA
Control 2


title: WHEL ID 3263

description:
NanoString reporter probe
X2895383249_2


title: WHEL ID 3383

description:
NanoString reporter probe
X2895383251_4


title: WHEL ID 13008

description:
NanoString reporter probe
X2895383252_5


title: Healthy Control without CA C081

description:
Healthy Control without CA
Control 2


title: Healthy Control without CA C080

description:
Healthy Control without CA
Control 2


title: Healthy Control without CA C087

description:
Healthy Control without CA
Control 2


title: WHEL ID 1452

description:
NanoString reporter probe
X2895383248_1


title: WHEL ID 11166

description:
NanoString reporter probe
X2895383247_12


title: Healthy Control without CA C078

description:
Healthy Control without CA
Control 2


title: Healthy Control without CA C076

description:
Healthy Control without CA
Control 2


title: Healthy Control without CA C075

description:
Healthy Control without CA
Control 2


title: Healthy Control without CA C077

description:
Healthy Control without CA
Control 2


title: WHEL ID 3151

description:
NanoString reporter probe
X2895383246_11


title: Healthy Control without CA C074

description:
Healthy Control without CA
Control 2


title: WHEL ID 9522

description:
NanoString reporter probe
X2895383245_10


title: WHEL ID 11186

description:
NanoString reporter probe
X2895383241_6


title: WHEL ID 3387

description:
NanoString reporter probe
X2895383242_7


title: Healthy Control without CA C073

description:
Healthy Control without CA
Control 2


title: WHEL ID 11376

description:
NanoString reporter probe
X2895383239_4


title: WHEL ID 11396

description:
NanoString reporter probe
X2895383240_5


title: Healthy Control without CA C071

description:
Healthy Control without CA
Control 2


title: WHEL ID 3296

description:
NanoString reporter probe
X2895383238_3


title: Healthy Control without CA C079

description:
Healthy Control without CA
Control 2


title: Healthy Control without CA C070

description:
Healthy Control without CA
Control 2


title: Healthy Control without CA C069

description:
Healthy Control without CA
Control 2


title: WHEL ID 11343

description:
NanoString reporter probe
X2895383235_11


title: Major Depressive Disorder MDD067

description:
Major Depressive Disorder
Test


title: WHEL ID 3337

description:
NanoString reporter probe
X2895383236_12


title: WHEL ID 13214

description:
NanoString reporter probe
X2895383237_2


title: WHEL ID 3386

description:
NanoString reporter probe
X2895383243_8


title: Major Depressive Disorder MDD066

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD065

description:
Major Depressive Disorder
Test


title: WHEL ID 11109

description:
NanoString reporter probe
X2895383234_10


title: WHEL ID 9509

description:
NanoString reporter probe
X2895383233_9


title: WHEL ID 3385

description:
NanoString reporter probe
X2895383244_9


title: Healthy Control without CA C072

description:
Healthy Control without CA
Control 2


title: Major Depressive Disorder MDD068

description:
Major Depressive Disorder
Test


title: WHEL ID 9486

description:
NanoString reporter probe
X2895383232_8


title: Major Depressive Disorder MDD063

description:
Major Depressive Disorder
Test


title: WHEL ID 9524

description:
NanoString reporter probe
X2895383231_7


title: Oct4-Day6-R1

city: Nijmegen

first: Georgina

last: Peñalosa Ruiz

address: Geert Grooteplein 30

institute: Radboud University

description: tet-OSKM lentiviral cassette was induced with doxycycline

data_processing:
RNA-seq reads from mouse cells were mapped to genome mm10 using STAR version 2.5.2b with --quantMode geneCounts
Low-count gene filtering and normalization by log-cpm (log2-counts per million reads) were done with R package edgeR version 3.20.9
Genome_build: mm10 (GRCm38)
Supplementary_files_format_and_content: tab delimited text files (.txt) containing normalized values in log counts per million reads

organism: Mus musculus

source_name: primary Mouse Embryonic Fibroblasts transduced with tet-STEMCCA lentiviruses containing Oct4, Sox2, Klf4 and c-Myc transgenes.

growth_protocol: Passage 1 MEFs were plated on gelatin-coated plates at a density of 10 000 cells per cm2. Next day they were incubated for 24 hours with inducible tet-OSKM (STEMCCA) and rtTA lentiviruses at an MOI of 1. Reprogramming medium was composed of DMEM, 10 % FBS, 2ug/mL doxycycline, 3uM chiron, 0.25 uM Alk5i (TGFb-inhibitor), 50 ug/mL ascorbic acid and LIF.

extract_protocol:
RNA was isolated with the kit Quick-RNA microprep from Zymo Research (Cat# R1051), according to the manufacturer's instructions
200 ng total RNA were used to start the double-strand cDNA sysnthesis and library preparation with the Kapa RNA Hyper Prep Kit with Ribo Erase (Roche, #KK8561) following standard Illumina protocols

treatment_protocol: After OSKM-rtTA transduction, cells were reverse transfected with 40 nM pooled siRNAs and RNAiMAX lipofectamine. 24 hours post-transfection, cells were re-plated on gelatin-coated wells, and induced for reprogramming with doxycycline and reprogramming medium

tag: time when rna was collected

value: Day 6 of reprogramming

tag: strain

tag: genotype

value: Wild-type

tag: passages

value: Reprogrammed at passage 2

tag: sirna

value: transfected with Oct4 siRNA


title: Major Depressive Disorder MDD064

description:
Major Depressive Disorder
Test

tag: sex (0=m)


title: WHEL ID 11320

description:
NanoString reporter probe
X2895383228_3


title: WHEL ID 13244

description:
NanoString reporter probe
X2895383230_5


title: WHEL ID 9475

description:
NanoString reporter probe
X2895383229_4


title: Major Depressive Disorder MDD062

description:
Major Depressive Disorder
Test

tag: group (0=control)


title: Ncor1-Day6-R2

value: transfected with Ncor1 siRNA


title: WHEL ID 1541

description:
NanoString reporter probe
X2895383226_1


title: Major Depressive Disorder MDD061

description:
Major Depressive Disorder
Test

tag: age


title: WHEL ID 11314

description:
NanoString reporter probe
X2895383225_12


title: Major Depressive Disorder MDD060

description:
Major Depressive Disorder
Test

tag: bmi


title: Oct4-Day6-R2


title: WHEL ID 5570

description:
NanoString reporter probe
X2895383224_11


title: Oct4-Day3-R1

value: Day 3 of reprogramming


title: Major Depressive Disorder MDD058

description:
Major Depressive Disorder
Test

tag: episodes


title: Ncor1-Day3-R2


title: WHEL ID 7431

description:
NanoString reporter probe
X2895383221_8


title: Major Depressive Disorder MDD059

description:
Major Depressive Disorder
Test

tag: ctanysubscale (0=no)


title: WHEL ID 5565

description:
NanoString reporter probe
X2895383227_2


title: WHEL ID 13153

description:
NanoString reporter probe
X2895383218_5


title: Major Depressive Disorder MDD057

description:
Major Depressive Disorder
Test

tag: ctqemoabuse


title: Oct4-Day3-R2


title: Ncor1-Day6-R1


title: WHEL ID 9461

description:
NanoString reporter probe
X2895383217_4


title: Ncor1-Day3-R1


title: Major Depressive Disorder MDD056

description:
Major Depressive Disorder
Test

tag: ctqphyabuse


title: WHEL ID 7495

description:
NanoString reporter probe
X2895383222_9


title: WHEL ID 1448

description:
NanoString reporter probe
X2895383214_11


title: WHEL ID 11297

description:
NanoString reporter probe
X2895383212_9


title: WHEL ID 13155

description:
NanoString reporter probe
X2895383213_10


title: Major Depressive Disorder MDD055

description:
Major Depressive Disorder
Test

tag: ctqsexabuse


title: Major Depressive Disorder MDD054

description:
Major Depressive Disorder
Test

tag: ctqemoneglect


title: WHEL ID 11331

description:
NanoString reporter probe
X2895383219_6


title: WHEL ID 13168

description:
NanoString reporter probe
X2895383211_8


title: WHEL ID 13233

description:
NanoString reporter probe
X2895383215_1


title: WHEL ID 9459

description:
NanoString reporter probe
X2895383210_7


title: WHEL ID 5563

description:
NanoString reporter probe
X2895383223_10


title: Major Depressive Disorder MDD053

description:
Major Depressive Disorder
Test

tag: ctqphyneglect


title: WHEL ID 1422

description:
NanoString reporter probe
X2895383209_6

tag: tissue


title: WHEL ID 13210

description:
NanoString reporter probe
X2895383207_4


title: WHEL ID 13201

description:
NanoString reporter probe
X2895383208_5


title: WHEL ID 5524

description:
NanoString reporter probe
X2895383206_3


title: Major Depressive Disorder MDD052

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD051

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD050

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD049

description:
Major Depressive Disorder
Test


title: WHEL ID 5195

description:
NanoString reporter probe
X2895383200_9


title: B6_mac_12w_4

city: St. Louis

first: Pavel

last: Zakharov

state: MO

address: 660 S Euclid Ave Box 8118

department: Pathology and Immunology

institute: Wash.Univ in St. Louis

description: processed data file: Expression_table.txt

data_processing:
Raw reads were aligned with the STAR aligner.
Counts were generated with htseq-count utility from the HTSeq Python library.
Differential gene expression was performed using DESeq2 R package with Benjamini-Hochberg adjusted P-value = 0.05 as a threshold.
Genome_build: mm10 (GRCm38)
Supplementary_files_format_and_content: Expression_table.txt: Tab-delimited text file

source_name: Pancreatic islets

extract_protocol:
Pancreatic islets were isolated and dispersed into single-cell suspension using non-enzymatic Cell Dissociation Solution (Sigma-Aldrich) for 5 min at 37°C. Then to block Fc-receptors engaging, the cell suspensions were incubated at 4°C for 15 min in PBS (pH 7.4) supplemented with 1% BSA and 50% of FC-block (made in-house). For surface staining, cells were incubated with fluorescently labeled antibodies (1:200 v/v) supplemented with Fixable viability Dye eFuor780 (1:1000 v/v) at 4°C for 20 minutes. Cells were then washed and subjected to FACS. Live B220-, CD90-, CD45+, F4/80+, CD11c+ cells were sorted using islet cells from 6-14 mice per one sample.
mRNA was isolated with RNAqueous-MicroKit (Thermo Fisher Scientific), and SeqPlex RNA Amplification kit (Sigma-Aldrich) was used for cDNA preparation following manufacturer’s instructions.

tag: strain/background

value: 12 weeks

tag: Sex

value: female

tag: cell type

value: Pancreatic islet macrophages


title: B6_mac_12w_3


title: WHEL ID 1454

description:
NanoString reporter probe
X2895383203_12


title: WHEL ID 13130

description:
NanoString reporter probe
X2895383202_11


title: WHEL ID 3388

description:
NanoString reporter probe
X2895383201_10


title: WHEL ID 5488

description:
NanoString reporter probe
X2895383204_1


title: WHEL ID 13128

description:
NanoString reporter probe
X2895383205_2


title: Major Depressive Disorder MDD048

description:
Major Depressive Disorder
Test


title: WHEL ID 7457

description:
NanoString reporter probe
X2895383198_6


title: WHEL ID 7342

description:
NanoString reporter probe
X2895383199_7


title: Major Depressive Disorder MDD047

description:
Major Depressive Disorder
Test


title: WHEL ID 5485

description:
NanoString reporter probe
X2895383197_5


title: Major Depressive Disorder MDD046

description:
Major Depressive Disorder
Test


title: B6_mac_12w_2


title: WHEL ID 11252

description:
NanoString reporter probe
X2895383196_4


title: B6_mac_12w_1


title: Major Depressive Disorder MDD045

description:
Major Depressive Disorder
Test


title: WHEL ID 1446

description:
NanoString reporter probe
X2895383194_2


title: WHEL ID 7460

description:
NanoString reporter probe
X2895383195_3


title: WHEL ID 9420

description:
NanoString reporter probe
X2895383193_1


title: WHEL ID 9464

description:
NanoString reporter probe
X2895383192_12


title: B6_mac_4w_4

value: 4 weeks


title: WHEL ID 11261

description:
NanoString reporter probe
X2895383191_11


title: WHEL ID 1437

description:
NanoString reporter probe
X2895383190_10


title: B6_mac_4w_3


title: Major Depressive Disorder MDD044

description:
Major Depressive Disorder
Test


title: WHEL ID 5521

description:
NanoString reporter probe
X2895383187_6


title: WHEL ID 5514

description:
NanoString reporter probe
X2895383189_9


title: B6_mac_4w_2


title: WHEL ID 13221

description:
NanoString reporter probe
X2895383188_8


title: B6_mac_4w_1


title: Major Depressive Disorder MDD042

description:
Major Depressive Disorder
Test

value: MEDIUM


title: WHEL ID 11152

description:
NanoString reporter probe
X2895383182_1


title: B6_mac_2w_3

value: 2 weeks


title: WHEL ID 11254

description:
NanoString reporter probe
X2895383184_3


title: B6_mac_2w_2


title: WHEL ID 5525

description:
NanoString reporter probe
X2895383186_5


title: WHEL ID 1499

description:
NanoString reporter probe
X2895383181_12


title: WHEL ID 5503

description:
NanoString reporter probe
X2895383180_11


title: Major Depressive Disorder MDD041

description:
Major Depressive Disorder
Test

value: NO


title: Major Depressive Disorder MDD040

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD039

description:
Major Depressive Disorder
Test


title: WHEL ID 9460

description:
NanoString reporter probe
X2895383183_2


title: WHEL ID 7436

description:
NanoString reporter probe
X2895383179_10


title: Major Depressive Disorder MDD038

description:
Major Depressive Disorder
Test


title: B6_mac_2w_1


title: WHEL ID 7425

description:
NanoString reporter probe
X2895383178_9


title: WHEL ID 1420

description:
NanoString reporter probe
X2895383177_8


title: Major Depressive Disorder MDD043

description:
Major Depressive Disorder
Test

value: PAST


title: NOD_mac_12w_3

value: NOD/ShiLtJ (NOD)


title: WHEL ID 1419

description:
NanoString reporter probe
X2895383174_4


title: Major Depressive Disorder MDD036

description:
Major Depressive Disorder
Test


title: NOD_mac_12w_2


title: WHEL ID 9397

description:
NanoString reporter probe
X2895383171_3


title: WHEL ID 7441

description:
NanoString reporter probe
X2895383170_2


title: Major Depressive Disorder MDD034

description:
Major Depressive Disorder
Test


title: WHEL ID 1414

description:
NanoString reporter probe
X2895383168_12


title: WHEL ID 1453

description:
NanoString reporter probe
X2895383169_1


title: Major Depressive Disorder MDD035

description:
Major Depressive Disorder
Test


title: NOD_mac_8w_4

value: 8 weeks


title: WHEL ID 7230

description:
NanoString reporter probe
X2895383166_10

value: primary breast cancer


title: Major Depressive Disorder MDD033

description:
Major Depressive Disorder
Test

value: LOW

value: YES


title: WHEL ID 7424

description:
NanoString reporter probe
X2895383167_11


title: NOD_mac_8w_3


title: WHEL ID 5499

description:
NanoString reporter probe
X2895383165_9


title: NOD_mac_8w_2


title: WHEL ID 7403

description:
NanoString reporter probe
X2895383164_8


title: Major Depressive Disorder MDD032

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD037

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD031

description:
Major Depressive Disorder
Test


title: WHEL ID 13184

description:
NanoString reporter probe
X2895383175_6


title: WHEL ID 13171

description:
NanoString reporter probe
X2895383161_5


title: NOD_mac_8w_1


title: WHEL ID 7429

description:
NanoString reporter probe
X2895383160_4


title: Major Depressive Disorder MDD030

description:
Major Depressive Disorder
Test


title: NOD_mac_4w_4


title: NOD_mac_12w_1


title: WHEL ID 9406

description:
NanoString reporter probe
X2895383159_2


title: WHEL ID 11008

description:
NanoString reporter probe
X2895383158_1


title: NOD_mac_4w_3


title: NOD_mac_4w_1


title: WHEL ID 7430

description:
NanoString reporter probe
X2895383162_6


title: NOD_mac_4w_2


title: WHEL ID 7405

description:
NanoString reporter probe
X2895383157_2


title: WHEL ID 7391

description:
NanoString reporter probe
X2895383163_7


title: Major Depressive Disorder MDD027

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD029

description:
Major Depressive Disorder
Test


title: WHEL ID 5506

description:
NanoString reporter probe
X2895383156_11


title: NOD_mac_2w_4


title: Major Depressive Disorder MDD028

description:
Major Depressive Disorder
Test


title: WHEL ID 3200

description:
NanoString reporter probe
X2895383149_6


title: Major Depressive Disorder MDD026

description:
Major Depressive Disorder
Test


title: WHEL ID 7271

description:
NanoString reporter probe
X2895383154_9


title: NOD_mac_2w_3


title: WHEL ID 3222

description:
NanoString reporter probe
X2895383155_10


title: WHEL ID 3096

description:
NanoString reporter probe
X2895383151_8


title: WHEL ID 5537

description:
NanoString reporter probe
X2895383147_4


title: WHEL ID 3026

description:
NanoString reporter probe
X2895383148_5


title: WHEL ID 7455

description:
NanoString reporter probe
X2895383146_3


title: Major Depressive Disorder MDD024

description:
Major Depressive Disorder
Test

value: HIGH


title: Major Depressive Disorder MDD025

description:
Major Depressive Disorder
Test


title: NOD_mac_2w_2


title: NOD_mac_2w_1


title: WHEL ID 13132

description:
NanoString reporter probe
X2895383145_2


title: WHEL ID 3418

description:
NanoString reporter probe
X2895383144_1


title: WHEL ID 9386

description:
NanoString reporter probe
X2895383142_11


title: Major Depressive Disorder MDD023

description:
Major Depressive Disorder
Test


title: WHEL ID 5479

description:
NanoString reporter probe
X2895383141_10


title: Major Depressive Disorder MDD022

description:
Major Depressive Disorder
Test


title: WHEL ID 1326

description:
NanoString reporter probe
X2895383139_8


title: NE IL (CMV-Mycl)_MR6010a

city: Amsterdam

first: Oscar

last: Krijgsman

state: Outside the US or Canada

address: Plesmanlaan 121

department: Molecular Oncology and Immunology

institute: Netherlands Cancer Institute

data_processing:
Raw sequence reads were mapped with STAR
Read count data was generated using HTseq-count.
Genome_build: mm10
Supplementary_files_format_and_content: Raw read count data

source_name: Mouse lung (SCLC)

extract_protocol: RNA libraries were prepared for sequencing using standard Illumina protocols

value: tumor

tag: histology

value: NE

tag: location

value: IL

tag: genotype

value: Mycl overexpression

tag: virus

value: CMV


title: WHEL ID 5492

description:
NanoString reporter probe
X2895383140_9


title: NE junction (CMV-Mycl)_MR6009c

value: junction


title: WHEL ID 1498

description:
NanoString reporter probe
X2895383138_7


title: NE IL (CMV-Mycl)_MR6009a


title: WHEL ID 1487

description:
NanoString reporter probe
X2895383135_3


title: Major Depressive Disorder MDD021

description:
Major Depressive Disorder
Test

tag: sex (0=m)

tag: group (0=control)

tag: age


title: WHEL ID 7398

description:
NanoString reporter probe
X2895383137_6


title: WHEL ID 13131

description:
NanoString reporter probe
X2895383136_5


title: Major Depressive Disorder MDD018

description:
Major Depressive Disorder
Test

tag: bmi

tag: episodes

tag: ctanysubscale (0=no)


title: Major Depressive Disorder MDD019

description:
Major Depressive Disorder
Test

tag: ctqemoabuse

tag: ctqphyabuse

tag: ctqsexabuse


title: WHEL ID 7396

description:
NanoString reporter probe
X2895383133_1

tag: tissue


title: AdC (SPC-FGFR1)_MR6007a

value: AdC

value: FGFR1 overexpression

value: SPC


title: WHEL ID 5495

description:
NanoString reporter probe
X2895383134_3


title: AdC (SPC-FGFR1)_MR6006a


title: WHEL ID 11358

description:
NanoString reporter probe
X2895383216_3


title: WHEL ID 1483

description:
NanoString reporter probe
X2895383131_11


title: Major Depressive Disorder MDD017

description:
Major Depressive Disorder
Test

tag: ctqemoneglect

tag: ctqphyneglect

value: NO


title: WHEL ID 13133

description:
NanoString reporter probe
X2895383130_9


title: AdC (CGRP-FGFR1)_MR5999c

value: CGRP


title: WHEL ID 13129

description:
NanoString reporter probe
X2895383128_7


title: Major Depressive Disorder MDD016

description:
Major Depressive Disorder
Test


title: AdC (CGRP-FGFR1)_MR5998c


title: AdC (SPC-FGFR1)_MR6008a


title: WHEL ID 13141

description:
NanoString reporter probe
X2895383127_6


title: Major Depressive Disorder MDD015

description:
Major Depressive Disorder
Test


title: WHEL ID 13162

description:
NanoString reporter probe
X2895383129_8


title: WHEL ID 3310

description:
NanoString reporter probe
X2895383124_3


title: AdC (CGRP-FGFR1)_MR5997c


title: WHEL ID 3306

description:
NanoString reporter probe
X2895383125_4


title: WHEL ID 1449

description:
NanoString reporter probe
X2895383132_12


title: WHEL ID 11193

description:
NanoString reporter probe
X2895383126_5


title: Major Depressive Disorder MDD020

description:
Major Depressive Disorder
Test

value: MEDIUM


title: WHEL ID 3330

description:
NanoString reporter probe
X2895383123_2


title: Major Depressive Disorder MDD013

description:
Major Depressive Disorder
Test


title: WHEL ID 5433

description:
NanoString reporter probe
X2895383122_1


title: Major Depressive Disorder MDD014

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD012

description:
Major Depressive Disorder
Test


title: WHEL ID 3083

description:
NanoString reporter probe
X2895383120_10


title: Major Depressive Disorder MDD011

description:
Major Depressive Disorder
Test


title: NE junction (CMV-Mycl)_MR6004c


title: NE central (CMV-Mycl)_MR6005a

value: central


title: WHEL ID 3254

description:
NanoString reporter probe
X2895383119_9

value: primary breast cancer


title: WHEL ID 3102

description:
NanoString reporter probe
X2895383118_8


title: WHEL ID 9343

description:
NanoString reporter probe
X2895383117_7


title: NE central (CMV-Mycl)_MR6004a


title: WHEL ID 11215

description:
NanoString reporter probe
X2895383116_6


title: WHEL ID 3302

description:
NanoString reporter probe
X2895383115_5


title: Major Depressive Disorder MDD009

description:
Major Depressive Disorder
Test


title: NE central (CMV-Mycl)_MR6003a


title: Major Depressive Disorder MDD008

description:
Major Depressive Disorder
Test

value: LOW


title: NE central(CGRP-Mycl)_MR6002a


title: WHEL ID 3300

description:
NanoString reporter probe
X2895383113_3


title: WHEL ID 3297

description:
NanoString reporter probe
X2895383114_4


title: Major Depressive Disorder MDD007

description:
Major Depressive Disorder
Test


title: WHEL ID 1335

description:
NanoString reporter probe
X2895383111_4


title: WHEL ID 3291

description:
NanoString reporter probe
X2895383112_2


title: Major Depressive Disorder MDD010

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD006

description:
Major Depressive Disorder
Test


title: NE IL (CMV-Mycl)_MR6005c


title: WHEL ID 13101

description:
NanoString reporter probe
X2895383110_12


title: WHEL ID 3295

description:
NanoString reporter probe
X2895383107_8


title: WHEL ID 3243

description:
NanoString reporter probe
X2895383106_7


title: WHEL ID 7222

description:
NanoString reporter probe
X2895383105_6


title: Major Depressive Disorder MDD004

description:
Major Depressive Disorder
Test


title: NE central(CGRP-Mycl)_MR6001a


title: WHEL ID 1295

description:
NanoString reporter probe
X2895383108_10


title: Major Depressive Disorder MDD003

description:
Major Depressive Disorder
Test


title: Major Depressive Disorder MDD005

description:
Major Depressive Disorder
Test


title: NE central (CGRP-FGFR1)_MR5999a


title: Major Depressive Disorder MDD002

description:
Major Depressive Disorder
Test

value: YES


title: WHEL ID 7353

description:
NanoString reporter probe
X2895383099_12


title: NE junction (CMV-Mycl)_MR6003c


title: NE central (CGRP-Mycl)_MR6000a


title: Healthy Control with CA C068

description:
Healthy Control with CA
Test


title: WHEL ID 13071

description:
NanoString reporter probe
X2895383097_9


title: WHEL ID 1340

description:
NanoString reporter probe
X2895383098_10


title: NE central (CGRP-FGFR1)_MR5998a


title: WHEL ID 3348

description:
NanoString reporter probe
X2895383103_4


title: WHEL ID 9302

description:
NanoString reporter probe
X2895383101_2


title: WHEL ID 7203

description:
NanoString reporter probe
X2895383109_11


title: WHEL ID 5442

description:
NanoString reporter probe
X2895383100_1


title: Major Depressive Disorder MDD001

description:
Major Depressive Disorder
Test


title: WHEL ID 7331

description:
NanoString reporter probe
X2895383092_2


title: Healthy Control with CA C065

description:
Healthy Control with CA
Test


title: WHEL ID 1342

description:
NanoString reporter probe
X2895383095_7


title: WHEL ID 7310

description:
NanoString reporter probe
X2895383096_8


title: CCI 2

city: Hefei

first: zhi

last: zhang

state: Anhui

address: 443 Huangshan Road

department: School of Life Science

country: China

institute: University of Science and Technology of China

data_processing:
Basecalls were performed using CASAVA version 1.8.0
Adaptor trimmed sequenced reads were filtered by removing low-quality bases (quality < 20), short sequences (length < 25 bp) and ribosome RNA reads using Seqtk
Clean reads were aligned to the mm10 genome assembly using Hissat version 2.0.4 with default parameters
Gene abundance measurements, Fragments Per Kilobase of exon model per Million mapped reads (FPKM), were generationed and normalized using Stringtie version 1.3.0 and Perl version 5.8.8.
Differential gene expression were analysed using bioconductor package edgeR
Genome_build: UCSC mm10
Supplementary_files_format_and_content: Tab-delimited text files containing normalized FPKM value of detected gene for each sample.

molecule: polyA RNA

source_name: A glutamatergic neuron

growth_protocol: Mice were housed 4-5 per cage during a 12 hours’ light-dark cycle at a comfortable temperature (21 ± 3°C) with free access to water and food in clean environment. The brain slices containing S1L2/3 were prepared in ice-cold artificial cerebrospinal fluid with continuous 5% CO2 and 95% O2.

extract_protocol:
A tdTomat-labeled neuron was recorded by whole-cell patch clamp, then was aspirated into a glass pipette for single-cell RNA extraction using lysis buffer. Single-cell RNA was amplificated using Improved SMART-Seq2 method according to manufacturer’s protocol.
Purified cDNA was sheared into 150-350 bp fragments by Covaris S2. cDNA libraries were constructed using Ovation Ultralow Library System V2 (Nugen 0347) following manufacturer’s protocol.

treatment_protocol: CCI maternal mice were subjected to chronic constraint injury, then produced offspring (CCI offspring) after mating normal mice. And sham mice were used to control.

tag: strain

tag: gender

value: female

value: Somatosensory cortex


title: Healthy Control with CA C067

description:
Healthy Control with CA
Test


title: NE central (CGRP-C)_MR5994a

value: tumor

tag: histology

value: NE

tag: location

value: CTR


title: CCI 3


title: CCI 1


title: NE central (CGRP-C)_MR5996a

tag: genotype

tag: virus


title: Healthy Control with CA C064

description:
Healthy Control with CA
Test

tag: sex (0=m)

tag: group (0=control)


title: NE central (CGRP-C)_MR5995a


title: WHEL ID 1393

description:
NanoString reporter probe
X2895383091_3

source_name: primary breast cancer


title: WHEL ID 1327

description:
NanoString reporter probe
X2895383150_7


title: Healthy Control with CA C066

description:
Healthy Control with CA
Test

tag: age

tag: bmi


title: NE central (CGRP-FGFR1)_MR5997a


title: WHEL ID 11135

description:
NanoString reporter probe
X2895383093_5


title: Healthy Control with CA C062

description:
Healthy Control with CA
Test

tag: episodes

tag: ctanysubscale (0=no)


title: WHEL ID 3074

description:
NanoString reporter probe
X2895383085_9


title: WHEL ID 5439

description:
NanoString reporter probe
X2895383089_1


title: WHEL ID 3242

description:
NanoString reporter probe
X2895383090_2


title: WHEL ID 9352

description:
NanoString reporter probe
X2895383094_6


title: Sham 3


title: Healthy Control with CA C061

description:
Healthy Control with CA
Test

tag: ctqemoabuse

tag: ctqphyabuse


title: WHEL ID 1212

description:
NanoString reporter probe
X2895383087_11

tag: tissue


title: WHEL ID 5341

description:
NanoString reporter probe
X2895383086_10


title: Healthy Control with CA C063

description:
Healthy Control with CA
Test

tag: ctqsexabuse

tag: ctqemoneglect


title: WHEL ID 5244

description:
NanoString reporter probe
X2895383088_12


title: CCI offspring 3

tag: strain


title: WHEL ID 1149

description:
NanoString reporter probe
X2895383083_7


title: WHEL ID 11162

description:
NanoString reporter probe
X2895383080_3


title: CCI offspring 2

tag: gender


title: Healthy Control with CA C059

description:
Healthy Control with CA
Test

tag: ctqphyneglect


title: WHEL ID 13049

description:
NanoString reporter probe
X2895383078_1


title: Sham 2


title: Healthy Control with CA C058

description:
Healthy Control with CA
Test


title: CCI offspring 1


title: WHEL ID 9299

description:
NanoString reporter probe
X2895383079_2


title: WHEL ID 1339

description:
NanoString reporter probe
X2895383104_5


title: WHEL ID 5403

description:
NanoString reporter probe
X2895383081_4


title: WHEL ID 9098

description:
NanoString reporter probe
X2895383077_12


title: Healthy Control with CA C057

description:
Healthy Control with CA
Test


title: Sham 1


title: MEF_shLmnAC_DamID_pupx17_replicate2 [control]

first: Karen

last: Reddy

state: MD

address: 855 North Wolfe Street

department: Center for Epigenetics/Biological Chemistry

institute: Johns Hopkins University

description:
processed data file: MEF_shAC_DamID_pupx17_replicate2_log2.bw
processed data file: MEF_shAC_DamID_pupx17_replicate2.LADs.bed.gz

library_source: genomic

data_processing:
Library strategy: DamID-seq
DamID reads were processed using LADetector (https://github.com/thereddylab/pyLAD) with quality-trimming and multmapping on. All other settings were default.
Genome_build: mm9 (MGSCv37)
Supplementary_files_format_and_content: BigWig files were output from LADetector as bedgraphs, converted with the UCSC genome browser utility bedGraphToBigWig, and represent the normalized log2 ratio of Dam-LaminB1/Dam.
Supplementary_files_format_and_content: Bed files were output from LADetector and represent the LAD calls from the DamID data.

source_name: MEF

growth_protocol: Primary MEFs were isolated from e13.5 embryos, cultured no more than 5 passes.

extract_protocol:
Genomic DNA was extracted and DamID was performed as described.
Library was generated using NEBNext Ultra DNA library prep kit (E7370) as described.

treatment_protocol: MEFs were treated with TSA, BIX01294, DZNep for 18-24 hours, then DamID virus was added. Cells were harvested at 60 hours. For knockdown experiment, MEFs were infected with shLaminA/C pviruses overnight, cells were then selected with puromycin. 4 days post infection with knockdown constructs, DamID virus was added and cells were harvested 48 hours later.

tag: strain/background

tag: cell type

value: MEF

tag: developmental stage

tag: treatment

value: shLaminA/C


title: WHEL ID 5408

description:
NanoString reporter probe
X2895383076_11


title: WHEL ID 9091

description:
NanoString reporter probe
X2895383075_10


title: WHEL ID 3262

description:
NanoString reporter probe
X2895383074_9


title: WHEL ID 7352

description:
NanoString reporter probe
X2895383102_3


title: Healthy Control with CA C060

description:
Healthy Control with CA
Test

tag: sex (0=m)

tag: group (0=control)


title: WHEL ID 3272

description:
NanoString reporter probe
X2895383072_7


title: Healthy Control with CA C056

description:
Healthy Control with CA
Test

tag: age

tag: bmi


title: WHEL ID 9187

description:
NanoString reporter probe
X2895383073_8


title: Healthy Control with CA C055

description:
Healthy Control with CA
Test

tag: episodes

tag: ctanysubscale (0=no)


title: WHEL ID 1183

description:
NanoString reporter probe
X2895383070_5


title: WHEL ID 1362

description:
NanoString reporter probe
X2895383069_4


title: Healthy Control with CA C054

description:
Healthy Control with CA
Test

tag: ctqemoabuse

tag: ctqphyabuse


title: MEF_shLmnAC_DamID_pup1.5_replicate1 [experiment]

description:
processed data file: MEF_shAC_DamID_pup1.5_replicate1_log2.bw
processed data file: MEF_shAC_DamID_pup1.5_replicate1.LADs.bed.gz


title: WHEL ID 1190

description:
NanoString reporter probe
X2895383067_1

tag: tissue


title: WHEL ID 9292

description:
NanoString reporter probe
X2895383066_12


title: MEF_TSA_DamID_pupx17_replicate2 [control]

description:
processed data file: MEF_TSA_DamID_pupx17_replicate2_log2.bw
processed data file: MEF_TSA_DamID_pupx17_replicate2.LADs.bed.gz

value: TSA


title: MEF_shLmnAC_DamID_pupx17_replicate2 [experiment]


title: WHEL ID 5354

description:
NanoString reporter probe
X2895383071_6


title: WHEL ID 5346

description:
NanoString reporter probe
X2895383064_10


title: WHEL ID 5325

description:
NanoString reporter probe
X2895383063_9


title: WHEL ID 1354

description:
NanoString reporter probe
X2895383061_7


title: Healthy Control with CA C053

description:
Healthy Control with CA
Test

tag: ctqsexabuse

tag: ctqemoneglect


title: MEF_TSA_DamID_pupx17_replicate2 [experiment]


title: Healthy Control with CA C052

description:
Healthy Control with CA
Test


title: MEF_TSA_DamID_pup1.8_replicate1 [control]

description:
processed data file: MEF_TSA_DamID_pup1.8_replicate1_log2.bw
processed data file: MEF_TSA_DamID_pup1.8_replicate1.LADs.bed.gz


title: Healthy Control with CA C051

description:
Healthy Control with CA
Test


title: WHEL ID 13060

description:
NanoString reporter probe
X2895383062_8


title: MEF_shLmnAC_DamID_pup1.5_replicate1 [control]


title: WHEL ID 5373

description:
NanoString reporter probe
X2895383059_4


title: Healthy Control with CA C049

description:
Healthy Control with CA
Test


title: WHEL ID 13058

description:
NanoString reporter probe
X2895383057_2


title: MEF_DZNep_DamID_pupx17_replicate2 [control]

description:
processed data file: MEF_DZNep_DamID_pupx17_replicate2_log2.bw
processed data file: MEF_DZNep_DamID_pupx17_replicate2.LADs.bed.gz

value: DZNep


title: WHEL ID 7243

description:
NanoString reporter probe
X2895383058_3


title: WHEL ID 11139

description:
NanoString reporter probe
X2895383060_5


title: Healthy Control with CA C050

description:
Healthy Control with CA
Test


title: WHEL ID 1209

description:
NanoString reporter probe
X2895383055_11


title: MEF_DZNep_DamID_pupx17_replicate2 [experiment]


title: WHEL ID 5383

description:
NanoString reporter probe
X2895383053_9


title: Healthy Control with CA C048

description:
Healthy Control with CA
Test


title: WHEL ID 7318

description:
NanoString reporter probe
X2895383054_10


title: MEF_DZNep_DamID_pup1.8_replicate1 [control]

description:
processed data file: MEF_DZNep_DamID_pup1.8_replicate1_log2.bw
processed data file: MEF_DZNep_DamID_pup1.8_replicate1.LADs.bed.gz


title: Healthy Control with CA C047

description:
Healthy Control with CA
Test


title: MEF_DZNep_DamID_pup1.8_replicate1 [experiment]


title: WHEL ID 9154

description:
NanoString reporter probe
X2895383051_7


title: MEF_TSA_DamID_pup1.8_replicate1 [experiment]


title: WHEL ID 5380

description:
NanoString reporter probe
X2895383048_4


title: WHEL ID 13032

description:
NanoString reporter probe
X2895383049_5


title: Healthy Control with CA C046

description:
Healthy Control with CA
Test


title: WHEL ID 3219

description:
NanoString reporter probe
X2895383050_6


title: MEF_BIX01294_DamID_pupx17_replicate2 [experiment]

description:
processed data file: MEF_BIX01294_DamID_pupx17_replicate2_log2.bw
processed data file: MEF_BIX01294_DamID_pupx17_replicate2.LADs.bed.gz


title: MEF_BIX01294_DamID_pupx17_replicate2 [control]


title: WHEL ID 5381

description:
NanoString reporter probe
X2895383046_2


title: WHEL ID 5384

description:
NanoString reporter probe
X2895383047_3


title: MEF_BIX01294_DamID_pup1.8_replicate1 [control]

description:
processed data file: MEF_BIX01294_DamID_pup1.8_replicate1_log2.bw
processed data file: MEF_BIX01294_DamID_pup1.8_replicate1.LADs.bed.gz


title: WHEL ID 3238

description:
NanoString reporter probe
X2895383082_5


title: WHEL ID 13027

description:
NanoString reporter probe
X2895383044_10


title: Healthy Control without CA C044

description:
Healthy Control without CA
Control 1


title: Healthy Control with CA C045

description:
Healthy Control with CA
Test


title: WHEL ID 11074

description:
NanoString reporter probe
X2895383045_11


title: WHEL ID 3320

description:
NanoString reporter probe
X2895383043_9


title: Healthy Control without CA C043

description:
Healthy Control without CA
Control 1


title: WHEL ID 5142

description:
NanoString reporter probe
X2895383042_8


title: MEF_BIX01294_DamID_pup1.8_replicate1 [experiment]


title: Healthy Control without CA C042

description:
Healthy Control without CA
Control 1


title: WHEL ID 9151

description:
NanoString reporter probe
X2895383052_8


title: Healthy Control without CA C041

description:
Healthy Control without CA
Control 1


title: WHEL ID 5125

description:
NanoString reporter probe
X2895383040_6


title: WHEL ID 9126

description:
NanoString reporter probe
X2895383041_7


title: WHEL ID 5147

description:
NanoString reporter probe
X2895383039_5


title: WHEL ID 3097

description:
NanoString reporter probe
X2895383121_11


title: MEF_WT_DamID_pupx17_replicate2 [control]

description:
processed data file: MEF_WT_DamID_pupx17_replicate2_log2.bw
processed data file: MEF_WT_DamID_pupx17_replicate2.LADs.bed.gz


title: MEF_WT_DamID_pupx17_replicate2 [experiment]


title: Healthy Control without CA C040

description:
Healthy Control without CA
Control 1


title: WHEL ID 1299

description:
NanoString reporter probe
X2895383036_2


title: MEF_WT_DamID_pup1.8_replicate1 [experiment]

description:
processed data file: MEF_WT_DamID_pup1.8_replicate1_log2.bw
processed data file: MEF_WT_DamID_pup1.8_replicate1.LADs.bed.gz


title: WHEL ID 9118

description:
NanoString reporter probe
X2895383038_4


title: MEF_WT_DamID_pup1.8_replicate1 [control]


title: WHEL ID 7275

description:
NanoString reporter probe
X2895382985_1


title: MEF_WT_DamID_pup1.5_replicate1 [control]

description:
processed data file: MEF_WT_DamID_pup1.5_replicate1_log2.bw
processed data file: MEF_WT_DamID_pup1.5_replicate1.LADs.bed.gz


title: WHEL ID 3225

description:
NanoString reporter probe
X2895382983_11


title: WHEL ID 5364

description:
NanoString reporter probe
X2895382984_12


title: WHEL ID 9169

description:
NanoString reporter probe
X2895382982_10


title: WHEL ID 3284

description:
NanoString reporter probe
X2895382980_8


title: WHEL ID 5333

description:
NanoString reporter probe
X2895382979_6


title: WHEL ID 5353

description:
NanoString reporter probe
X2895382981_9


title: Healthy Control without CA C036

description:
Healthy Control without CA
Control 1


title: Healthy Control without CA C037

description:
Healthy Control without CA
Control 1


title: WHEL ID 5343

description:
NanoString reporter probe
X2895382978_5


title: WHEL ID 9258

description:
NanoString reporter probe
X2895382975_2


title: Healthy Control without CA C035

description:
Healthy Control without CA
Control 1


title: WHEL ID 3271

description:
NanoString reporter probe
X2895382977_4


title: Healthy Control without CA C039

description:
Healthy Control without CA
Control 1


title: AML12_Ulk1KD_rep1

city: SINGAPORE

first: SUJOY

last: GHOSH

address: 8 COLLEGE ROAD

department: Cardiovascular & Metabolic Diseases

country: Singapore

institute: DUKE-NUS Graduate Medical School

hyb_protocol: Following fragmentation, samples were hybridized on the Affymetrix Mouse Gene 2_0-st array for 16hrs at 45oC.

scan_protocol: Array scanning was performed according to manufacturer's instructions

data_processing: Raw cell files were processed with R via the RMA package

label: Biotin

source_name: Hepatocyte (cell culture)

label_protocol: Biotinylated cRNA were prepared according to the Affymetrix protocol from 250ng of total RNA (GeneChip® WT PLUS Reagent Kit User Manual, Affymetrix).

growth_protocol: Mouse hepatocytes AML12 (CRL-2254) cells were maintained at 37°C in DMEM-F12 1:1  containing 10% fetal bovine serum, 1x ITS (Thermo Fisher Scientific, 41400), 10 nM  dexamethasone and 1x penicillin/streptomycin in a 5% CO2 humidified incubator. HepG2 cells  were maintained at 37°C in DMEM containing 10% fetal bovine serum.

extract_protocol: Total RNA was extracted according to the manufacturer's instructions (Rneasy Mini kit, Qiagen)

treatment_protocol: Samples were treated with control of Ulk1 targeting siRNAs prior to RNA extraction

value: Hepatocyte

tag: background strain

tag: Sex

value: male

tag: genotype

value: Ulk1 siRNA

tag: cell line


title: Healthy Control without CA C038

description:
Healthy Control without CA
Control 1

tag: ctqphyneglect


title: WHEL ID 9251

description:
NanoString reporter probe
X2895382974_1


title: WHEL ID 7268

description:
NanoString reporter probe
X2895382973_12


title: Healthy Control without CA C034

description:
Healthy Control without CA
Control 1


title: WHEL ID 5311

description:
NanoString reporter probe
X2895382971_11


title: MEF_WT_DamID_pup1.5_replicate1 [experiment]

tag: strain/background

tag: cell type

tag: developmental stage

tag: treatment


title: AML12_control_rep1

value: WT


title: Healthy Control without CA C033

description:
Healthy Control without CA
Control 1

tag: sex (0=m)

tag: group (0=control)

tag: age

tag: bmi


title: WHEL ID 5316

description:
NanoString reporter probe
X2895382970_10


title: WHEL ID 5331

description:
NanoString reporter probe
X2895382969_9


title: Healthy Control without CA C032

description:
Healthy Control without CA
Control 1

tag: episodes

tag: ctanysubscale (0=no)

tag: ctqemoabuse

tag: ctqphyabuse


title: Liver_control_rep1

source_name: Liver

tag: tissue

value: liver

tag: background strain

value: 6 weeks


title: Healthy Control without CA C031

description:
Healthy Control without CA
Control 1

tag: ctqsexabuse

tag: ctqemoneglect


title: WHEL ID 1303

description:
NanoString reporter probe
X2895382966_6

value: primary breast cancer


title: WHEL ID 7241

description:
NanoString reporter probe
X2895382968_8


title: WHEL ID 9156

description:
NanoString reporter probe
X2895382967_7


title: Liver_Ulk1KD_rep1

tag: Sex

tag: genotype


title: WHEL ID 3183

description:
NanoString reporter probe
X2895382963_2


title: WHEL ID 1237

description:
NanoString reporter probe
X2895382962_1


title: WHEL ID 7150

description:
NanoString reporter probe
X2895382964_4


title: Healthy Control without CA C029

description:
Healthy Control without CA
Control 1

tag: ctqphyneglect


title: WHEL ID 1307

description:
NanoString reporter probe
X2895382965_5


title: Healthy Control without CA C030

description:
Healthy Control without CA
Control 1


title: Healthy Control without CA C028

description:
Healthy Control without CA
Control 1


title: WHEL ID 7231

description:
NanoString reporter probe
X2895382959_9