title: SA1-AID input

description: Input

data_processing:
ChIP-seq data was aligned to hg19 using Bowtie under default settings.
Peak calling was carried out using MACS2, setting a q-value to 0.01. All data were normalized against the corresponding input control using the '-c' option of MACS 2.0.
Genome_build: hg19
Supplementary_files_format_and_content: Signal tracks (wig files) were generated with the "bamCoverage" function of deepTools 3.1.3 and were normalized to sequencing depth. The signal was further normalized against input data. Bigwig files were created from wig files using the wigToBigWig command line tool from UCSC Genome Browser Utilities.

growth_protocol: STAG1-AID cells were cultured in McCoy's 5A medium supplemented with 10% FBS and PSG. For all auxin degradation experiments using SA1-AID and SA2-AID cells auxin or the solvent ethanol as control were added for 12 hours.

extract_protocol:
ChIP-Seq for SMC3 was performed as described (Cabianca, Casa et al. 2012) with some adaptations. Approximately 5*107-1*108 cells were crosslinked by replacing the medium with the same volume 1% formaldehyde in PBS  for 10’ at RT. After quenching with 0.125M Glycine (final concentration), cells were washed three times with PBS, harvested using a silicon scraper. Lysis of the cells was carried out by incubating the cells in LB1 buffer (50 mM Hepes-KOH, pH 7.5, 140 mM NaCl, 1 mM EDTA, 10% glycerol, 0,5% NP-40, 0,25% Triton X-100) for 5’, followed by centrifugation at 1,350g for 5 min and incubation with LB2 buffer (10 mM Tris-HCl, pH= 8.0, 200 mM NaCl, 1 mM EDTA, 0,5 mM EGTA) for 10’. Nuclei were pelleted down by centrifugation of the cells at 1,350g for 5 min and were resuspended in LB3 buffer (10 mM Tris-HCl, ph=8,0, 100 mM NaCl, 1 mM EDTA, 0,5 mM EGTA, 0,1% Na-Deoxycholate, 0,5% N-lauroylsarcosine). All lysis buffer contained 1x protease inhibitors. This protocol ensures the removal of cytoplasmic proteins from the lysates. Sonication was performed using a Diagenode bioruptor (15 min, 5-7 cycles, 30” each). Sonicated lysates were cleared by the addition of Triton X-100 to a final concentration of 1% and by centrifugation at maximum speed for 10 min at 4°C. 50 µl of the sonicated lysates were reserved for input and the remaining material stored at – 80°C until use. To prepare the antibody-loaded beads, 100 µl of Dynabeads were washed three times with blocking solution (1x PBS, 0,5% BSA) and incubated overnight with 10 µg of the required antibodies. For each ChIP 100 µg  chromatin was incubated overnight at 4°C with the antibody-bound beads. Beads were washed 6X with RIPA buffer (50 mM Hepes-KOH, pH= 7,6, 500 mM LiCl, 1 mM EDTA, 1% NP-40, 0,7% Na-Deoxycholate), 1X with TE/50mM NaCl. The DNA was eluted from the beads by incubation with 250 µl of elution buffer (1x TE , 2% SDS) for 15 min at 65°C. Crosslinking of the ChIP and input samples was reversed by incubation at 65°C overnight, proteins were digested  by incubation with 8 µl of 10 mg/ml of Proteinase K at 55°C for 1 hour and RNA degraded by incubation with 8µl of 10 mg/ml  at 37°C for 30 min. DNA was purified then purified using phenol-chloroform extraction followed by ethanol precipitation. The DNA was then resuspended in 25 µL TE and used sequencing. The samples were prepared as Chip Seq Multiplex samples using the NEXTFlex ChIP-Seq kit from BioO Scientific and sequenced them according to the Illumina TruSeq v3 protocol on the HiSeq2000 for a single read 50bp in length and a 7bp index read. The data were de-multiplexed and mapped against GRCh38/hg19 as indicated below.
NGS libraries have been prepped from the ChIP DNA using the NEXTFlex ChIP-seq kit from BioO Scientific and sequenced according to the Illumina TruSeq Rapid v2 protocol on the HiSeq2500 for a single read 50bp in length and a 8bp dual index read.

treatment_protocol: The mAIDmClover neomycin cassette (plasmid pMK289 obtained from Addgene) was inserted at the 3' end of the STAG1 and STAG2 genes, 500-800nt homology arms were inserted left and right to the cassette present in the pMK289 plasmid. A gRNA targeting the 3' end of the SA1 or SA2 gene in front of the stop codon was cloned into a Cas9 expression construct (Addgene p48193). Both, the gRNA/Cas9 plasmid as well as the plasmid carrying homology arms and mAID-mClover neomycin cassette were transfected into HCT116 CMV-OsTIR1 cells using FuGene HD (Promega). After 6 days selection with 700 µg/ml G418 the cells were FACS-sorted for mClover expression and seeded into 96 well plates to grow single clones. To induce protein degradation 500 µM indole-3-acetic acid (auxin, IAA) dissolved in ethanol was added to the cells.


title: SA1-AID no aux SMC3 ChIP

status: Public on Mar 06 2020

type: SRA

city: Göttingen

first: Argyris

last: Papantonis

address: Robert-Koch-Straße 40

department: Institut für Pathologie

country: Germany

institute: Universitätsmedizin Göttingen

description: ChIP-Seq for SMC3 was performed as described (Cabianca, Casa et al. 2012) with some adaptations. Approximately 5*107-1*108 cells were crosslinked by replacing the medium with the same volume 1% formaldehyde in PBS  for 10’ at RT. After quenching with 0.125M Glycine (final concentration), cells were washed three times with PBS, harvested using a silicon scraper. Lysis of the cells was carried out by incubating the cells in LB1 buffer (50 mM Hepes-KOH, pH 7.5, 140 mM NaCl, 1 mM EDTA, 10% glycerol, 0,5% NP-40, 0,25% Triton X-100) for 5’, followed by centrifugation at 1,350g for 5 min and incubation with LB2 buffer (10 mM Tris-HCl, pH= 8.0, 200 mM NaCl, 1 mM EDTA, 0,5 mM EGTA) for 10’. Nuclei were pelleted down by centrifugation of the cells at 1,350g for 5 min and were resuspended in LB3 buffer (10 mM Tris-HCl, ph=8,0, 100 mM NaCl, 1 mM EDTA, 0,5 mM EGTA, 0,1% Na-Deoxycholate, 0,5% N-lauroylsarcosine). All lysis buffer contained 1x protease inhibitors. This protocol ensures the removal of cytoplasmic proteins from the lysates. Sonication was performed using a Diagenode bioruptor (15 min, 5-7 cycles, 30” each). Sonicated lysates were cleared by the addition of Triton X-100 to a final concentration of 1% and by centrifugation at maximum speed for 10 min at 4°C. 50 µl of the sonicated lysates were reserved for input and the remaining material stored at – 80°C until use. To prepare the antibody-loaded beads, 100 µl of Dynabeads were washed three times with blocking solution (1x PBS, 0,5% BSA) and incubated overnight with 10 µg of the required antibodies. For each ChIP 100 µg  chromatin was incubated overnight at 4°C with the antibody-bound beads. Beads were washed 6X with RIPA buffer (50 mM Hepes-KOH, pH= 7,6, 500 mM LiCl, 1 mM EDTA, 1% NP-40, 0,7% Na-Deoxycholate), 1X with TE/50mM NaCl. The DNA was eluted from the beads by incubation with 250 µl of elution buffer (1x TE , 2% SDS) for 15 min at 65°C. Crosslinking of the ChIP and input samples was reversed by incubation at 65°C overnight, proteins were digested  by incubation with 8 µl of 10 mg/ml of Proteinase K at 55°C for 1 hour and RNA degraded by incubation with 8µl of 10 mg/ml  at 37°C for 30 min. DNA was purified then purified using phenol-chloroform extraction followed by ethanol precipitation. The DNA was then resuspended in 25 µL TE and used sequencing. The samples were prepared as Chip Seq Multiplex samples using the NEXTFlex ChIP-Seq kit from BioO Scientific and sequenced them according to the Illumina TruSeq v3 protocol on the HiSeq2000 for a single read 50bp in length and a 7bp index read. The data were de-multiplexed and mapped against GRCh38/hg19 as indicated below.

library_source: genomic

molecule: genomic DNA

organism: Homo sapiens

source_name: HCT116 cells

tag: cell type

value: HCT116 CMV-OsTIR1

tag: genotype


title: ASD-2 ELUTED

type: RNA

city: Barcelona

first: Camille

last: Stephan Otto Attolini

state: Select a State or Province

address: Baldiri Reixac 10

department: Biostatistics and bioinformatics Unit

country: Spain

institute: IRB Barcelona

hyb_protocol: cDNA was hybridized to the microarray for 16 hours at 45ºC, washing and staining of microarrays was performed using a GeneChip Fluidics Station 450 (Affymetrix, Santa Clara, CA)

scan_protocol: Arrays were scanned with GeneChip scanner GSC3000 (Affymetrix, Santa Clara, CA)

data_processing: Normalized expression signals were calculated from Affymetrix CEL files using RMA algorithm (Irizarry et al., 2003)

label: biotin

molecule: polyA RNA

source_name: Prefrontal Cortex BA8/9

label_protocol: 5 ng total RNA was amplified using the TransPlex® Complete Whole Transcriptome Amplification Kit (Sigma; reference WTA2). Amplification was performed for 21 cycles. 8 µg of cDNA was subsequently fragmented and labeled using GeneChip Human Mapping 250K Nsp Assay Kit (Affymetrix; catalog # 900766), according to manufacturer's instructions.

growth_protocol: Brain specimens used in this study from frontal and temporal cortex of ASD patients and controls were provided by University of Maryland Brain and Tissue Bank, NIH NeuroBioBank (NBB) (Baltimore,MD). Written informed consent for brain removal after death for diagnostic and research purposes was obtained from brain donors and/or next of kin. Procedures, information and consent forms have been approved by the Bioethics Subcommittee.

extract_protocol: Prefrontal cortex samples were homogenized and total RNA (Input) was extracted using the Maxwell® 16 LEV simplyRNA Tissue Kit (Promega). The poly(A) RNA fraction was purified by poly(U) chromatography (Poly(U)-agarose, Sigma). Differential elution with 25% or 90% formamide yielded two fractions of mRNAs enriched for short (WASH) or long (ELUTED) poly(A)-tails, respectively. The RNA of the two poly(A) fractions was precipitated with isopropanol and purified by Phenol:Chloroform protocol.

tag: group

value: ASD

tag: material

value: ELUTED

tag: age

tag: postmorten interval (h)

tag: hybridization batch

value: A

tag: tissue

value: Prefrontal Cortex BA8/9

tag: rna fraction

value: Enriched in long poly(A)-tail RNA


title: Hi-C: SA2-AID clone 1 auxin

data_processing:
Raw reads were mapped, annotated, and corrected for biases using the Juicer suite 1.5 with default parameters.
After ensuring replicate reproducibility using HiCRep, data from the same treatments were merged for all downstream analyses also using Juicer 1.5 suite.
Compartment analysis was performed using the signal of the first principal component of the Pearson's Hi-C contact matrices.
TAD boundaries were identified using TADtool with default settings.
Chromatin contacts (loops) were called using Fit-Hi-C 2.0.5 with default settings.
Genome_build: hg19
Supplementary_files_format_and_content: Juicer suite's .hic contact matrices

growth_protocol: SA1-AID and SA2-AID cells were cultured in McCoy's 5A medium supplemented with 10% FBS and PSG. For all auxin degradation experiments using SA1-AID and SA2-AID cells auxin or the solvent ethanol as control were added for 12 hours.

extract_protocol:
Biotynilated DNA (Hi-C ligation junctions) was isolated using standard phenol/chloroform extraction followed by EtOH precipitation, sonicated to ~800 bp and repurified.
Libraries were prepared as described (Zirkel et al, Mol Cell, 2018) on the basis of the Illumina Mate-Pair protocol, by ligating sequencing linkers onto streptavidin-captured biotinylated DNA. All resulting DNA libraries were paired-end sequenced on an Illumina HSeq4000 platform to ~300 million read pairs each on a HiSeq4000 platform (Illumina).

treatment_protocol: mAIDmClover neomycin cassette (plasmid pMK289 obtained from Addgene) was inserted at the 3' end of the SA1 and SA2 genes, 500-800nt homology arms were inserted left and right to the cassette present in the pMK289 plasmid. A gRNA targeting the 3' end of the SA1 or SA2 gene in front of the stop codon was cloned into a Cas9 expression construct (Addgene p48193). Both, the gRNA/Cas9 plasmid as well as the plasmid carrying homology arms and mAID-mClover neomycin cassette were transfected into HCT116 CMV-OsTIR1 cells using FuGene HD (Promega). After 6 days selection with 700 µg/ml G418 the cells were FACS-sorted for mClover expression and seeded into 96 well plates to grow single clones. To induce protein degradation 500 µM indole-3-acetic acid (auxin, IAA) dissolved in ethanol was added to the cells.

tag: library id

tag: treatment

value: auxin


title: CTRL-3 ELUTED

value: CTRL

value: B


title: Vehicle replicate 3, GFP- cells from 3 mice [V4-_030917]

city: Lexington

first: Timothy

middle: S

last: McClintock

state: Kentucky

address: 508 Medical Science Buildi

department: Physiology

country: USA

institute: University of kentucky

description: mRNA abundance data

hyb_protocol: after fragmentation cRNA was hybridized for 16 hr at 45C on Clariom S Arrays. These were washed and stained in an Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using an Affymetrix GCS3000 7G Scanner

data_processing: The data were analyzed with Affymetrix Gene Expression Console software using default analysis settings and global scaling as normalization method.

molecule: total RNA

organism: Mus musculus

source_name: Olfactory mucosa; Vehicle-stimulated

label_protocol: Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 50 - 100 ng of total RNA.

growth_protocol: 24 mice of both sexes, ages 7 - 12 weeks, were placed individuallly in clean air chambers for 40 hrs under air flow of 3.1L/min

extract_protocol: Mice were euthanized, olfactory mucosa were dissected, dissociated, and subjected to FACS.

treatment_protocol: After 26 hrs, half the mice were intermittently stimulated with vehicle (filtered air) or odorant for 10 sec every 20 min.

tag: agent

value: Vehicle-stimulated

value: FACS sample, GFP-


title: Vehicle replicate 3, GFP- cells from 3 mice [V5-_030917]

description: mRNA abundance data


title: CTRL-4 INPUT

description: Pool of two CTRL individuals

source_name: Prefrontal Cortex BA9

value: INPUT

value: Prefrontal Cortex BA9

value: total RNA


title: Hi-C: SA2-AID clone 1 noauxin

value: no auxin


title: Vehicle replicate 3, GFP+ cells from 3 mice [V4+_030917]

description: mRNA abundance data

value: FACS sample, GFP+


title: Vehicle replicate 2, GFP- cells from 3 mice [V3-_030917]

description: mRNA abundance data


title: Vehicle replicate 1, GFP- cells from 3 mice [V2-_030917]

description: mRNA abundance data


title: ASD-1 ELUTED

source_name: Prefrontal Cortex BA8

value: Prefrontal Cortex BA8


title: ASD-2 INPUT


title: Vehicle replicate 2, GFP+cells from 3 mice [V3+_030917]

description: mRNA abundance data


title: Vehicle replicate 3, GFP+ cells from 3 mice [V5+_030917]

description: mRNA abundance data


title: Hi-C: SA1-AID clone 2 noauxin

value: HCT116 CMV-OsTIR1


title: Vehicle replicate 1, GFP+ cells from 3 mice [V2+_030917]

description: mRNA abundance data


title: Hi-C: SA1-AID clone 1 noauxin


title: ASD-2 WASH

value: ASD

value: WASH

value: Enriched in short poly(A)-tail RNA


title: Hi-C: SA1-AID clone 1 auxin


title: ASD-1 INPUT

value: A


title: Odor replicate 4, GFP- cells from 3 mice [INA5-_030917]

description: mRNA abundance data

value: indole/ionone-stimulated


title: ASD-1 WASH


title: CTRL-2 ELUTED

value: ELUTED

value: Prefrontal Cortex BA8/9

value: Enriched in long poly(A)-tail RNA


title: D6_L4440_3: Day 6 replicate 3

city: Villanova

first: Matthew

last: Youngman

state: PA

address: 800 E. Lancaster Ave., Mendel Hall Rm. 118

department: Biology

institute: Villanova University

library_source: transcriptomic

data_processing:
Sequences were checked for ribosomal depletion, contamination, and leftover adapter sequences
Sequences were trimmed and alinged to the C. elegans genome using TopHat2
Alignments were run with featureCounts then normalized using edgeR's calcNormFactors then transformmed using limma's voom
Changes in gene expression were identified by performing a differential expression analysis using DESeq2 on the igenbio ERGO platform (Igenbio, Inc., Chicago, Il)
Genome_build: WS253
Supplementary_files_format_and_content: Excel files contain RPKM values for each sample

organism: Caenorhabditis elegans

source_name: worm lysate

growth_protocol: Wild type N2 animals were synchronized by sodium hypochlorite treatment and dropped as L1 larvae to NGM RNAi plates containing 2mM IPTG, 100 mg/mL carbenicillin and seeded with E. coli strain HT115 harboring the L4440 plasmid (vector only control for feeding-based RNAi experiments). Animals were maintained on these plates at 20˚C until the L4 larval stage when half of the cohort was harvested for total RNA (brief description to follow). The other half of the cohort was transferred to new NGM RNAi plates containing 2mM IPTG, 100 mg/mL carbenicillin, 25ug/mL FUDR and seeded with E. coli strain HT115 harboring the L4440 plasmid. C. elegans were maintained on these plates at 20˚C until they reached the sixth day of adulthood when they were harvested for total RNA.

extract_protocol:
Worms were harvested from plates in M9 buffer, pelleted, then resuspended in Trizol. After a phenol-chloroform extraction, total RNA was precipitated in isopropanol, washed with ethanol, and resuspended in H2O. RNA was then treated with DNase, cleaned up using a Qiagen RNeasy column, and eluted in H2O.
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: strain

value: wildtype

value: Day 6 adults

value: worm lysate


title: Odor replicate 4, GFP+ cells from 3 mice [INA5+_030917]

description: mRNA abundance data


title: Odor replicate 3, GFP+ cells from 3 mice [INA4+_030917]

description: mRNA abundance data


title: Hi-C: SA1-AID clone 2 auxin

value: auxin


title: CTRL-2 WASH

value: CTRL


title: CTRL-1 ELUTED

value: Prefrontal Cortex BA9


title: D6_L4440_2: Day 6 replicate 2


title: Odor replicate 3, GFP- cells from 3 mice [INA4-_030917]

description: mRNA abundance data

value: FACS sample, GFP-


title: CTRL-2 INPUT

value: INPUT

value: total RNA


title: D6_L4440_1: Day 6 replicate 1


title: Odor replicate 2, GFP+ cells from 3 mice [INA3+_030917]

description: mRNA abundance data

value: FACS sample, GFP+


title: CTRL-1 INPUT


title: L4_L4440_2: L4 replicate 1


title: CTRL-1 WASH

value: WASH


title: Odor replicate 1, GFP- cells from 3 mice [INA2-_030917]

description: mRNA abundance data


title: Odor replicate 1, GFP+ cells from 3 mice [INA2+_030917]

description: mRNA abundance data


title: L4_L4440_3: L4 replicate 2


title: PfRrp6-FKBP-Shld1-_R_rep2_RNA-seq

city: Shanghai

first: Shijun

last: Shen

state: Shanghai

address: 1239 Siping Road, Shanghai, P.R. China

department: Bioninformatics

country: China

institute: Tongji University

description:
PfRrp6-DD clone line PfRrp6-DD-1C cultured without Shld1
PfRrp6-FKBP_rep1_rep2_Raw_Counts_sense_and_antisense_RNA.xlsx

data_processing:
Low-quality and adaptor sequences were trimmed from the reads using cutadapt (v1.16)  with parameters: -a AGATCGGAAGAGC -A AGATCGGAAGAGC --trim-n -m 75 -q 20,20.
Then, the reads were mapped to the Plasmodium falciparum 3D7 genome (Pf 3D7 v32, obtained from PlasmoDB) using Hisat2 strand-specific mode (v2.1.0)  with parameters: --rna-strandness RF --dta --no-discordant --no-mixed --no-unal.
The Samtools (v1.9)  was used to transfer the mapping results from sam format to position sorted bam format.
Mapped reads were subsequently assembled into transcripts guided by the PlasmoDB gff annotation files (Pf 3D7 v32) using featureCounts (v1.6.1)  with parameters: -M -p -B -C for all; -s 2 for sense transcripts; -s 1 for antisense transcripts.
The bam files were converted to bigwig files using bamCoverage from the deeptools suite  (v3.1.3) with parameters: --normalizeUsing RPKM --binSize 10 --smoothLength 30 -ignore Pf3D7_API_v3 Pf_M76611
Genome_build: Pf 3D7 v32
Supplementary_files_format_and_content: The raw counts were calculated by featureCounts as described above.

organism: Plasmodium falciparum

growth_protocol: Parasite-infected red blood cells were cultured in T75 flask at 2% hematocrit in the presence of 5% O2 and 5% CO2 (rest N2) in RPMI 1640 supplemented with 25mM Hepes, 50mg/l Hypoxanthine, 0.21% NaHCO3, 0.5% Albumax I and 20mg/l Gentamicin. The vector line was selected and cultured with 2.5nM WR99210. The 5mM GlcN was added in the inducible knock down culture.

extract_protocol:
Highly synchronous parasites were harvested at the ring stage (10 h after invasion), Total RNA was isolated using TRIzol (Life) according to the manufacturer’s manual and further purified using the Direct-zol RNA Kit (ZYMO RESEARCH) for removal of gDNA. Residual gDNA was digested with TURBO DNA-freeTM DNaseI (Ambion) and the RNA was quantified by NanoDrop.
The RNA isolation, mRNA enrichment and library construction were performed as described using 15 cycles of library amplification. The mRNA was enriched by poly(A) selection with the KAPA mRNA Capture Beads (KAPA), and fragmented to about 300–400 nucleotides (nt) in length, then all subsequent steps were performed in accordance with an KAPA Stranded mRNA-Seq Kit Illumina platform (KAPABIOSYSTEMS KK8421-96 libraries).

treatment_protocol: Parasite cultures were synchronized by repeated sorbitol and percoll-sorbitol treatments ((Lambros and Vanderberg, 1979)

tag: development stage

value: Ring

value: Pf 3D7

tag: host

value: Homo sapiens


title: del-hutC_RNASeq

city: Auckland

first: Xue-Xian

last: Zhang

address: 14.02 The Station Cre., Albany

department: School of Natural and Computational Sciences

country: New Zealand

institute: Massey University

data_processing:
The paired-end reads from Novogene were processed in the Geneious 9.0.5 program following the instructions
Reads were mapped to the reference genome of Pseudomonas fluorescens SBW25 (GenBank: AM181176.4)
Differentially expressed genes were determined based on transcripts comparison normalized using the Median of Gene Expression Ratios method implemented in Geneious 9.0.5.
Genome_build: Pseudomonas fluorescens SBW25 (GenBank: AM181176.4)
Supplementary_files_format_and_content: a csv file exported from Geneious containing raw read counts for both wild type and its derived del-hutC mutants, and ratios of differential expression for all genes in the genome.

organism: Pseudomonas fluorescens

source_name: bacterial cells

growth_protocol: Bacteria were exponentially grown in triplicate in the M9 mininmal salt medium summplemented with succinate (20 mM) and histidine (10 mM)

extract_protocol:
Total RNA was preparated using the SV Total RNA Isolation System purchased from Promega (Madison, WI)
RNA libraries were prepared for sequencing by Novogene Technology Co. Ltd, using the standard Illumina protocols

value: Isogenic hutC deletion mutant of SBW25


title: PfRrp6-FKBP-Shld1-_R_rep1_RNA-seq


title: WT_RNASeq

value: wild type


title: PfRrp6-FKBP-Shld1+_R_rep2_RNA-seq

description:
PfRrp6-DD clone line PfRrp6-DD-1C cultured with Shld1
PfRrp6-FKBP_rep1_rep2_Raw_Counts_sense_and_antisense_RNA.xlsx


title: P68-ph-rep2

city: Frederiksberg C

first: Søren

middle: K.

last: Rasmussen

state: Region Hovedstaden

address: Thorvaldsensvej 40

department: Department of Plant and Environmentalt Sciences

country: Denmark

institute: University of Copenhagen

data_processing:
The original raw data from Illumina HiSeqTM are transformed to Sequenced Reads by base calling.
Raw data (raw reads) of fastq format were firstly processed through in-house perl scripts. In this step, clean data (clean reads) were obtained by removing reads containing adapter, reads containing ploy-N and low quality reads from raw data.
Reference genome and gene model annotation files were downloaded from genome website directly. Index of the reference genome was built using Bowtie v2.2.3 and paired-end clean reads were aligned to the reference genome using TopHat v2.0.12. We
HTSeq v0.6.1 was used to count the reads numbers mapped to each gene. And then FPKM of each gene was calculated based on the length of the gene and reads count mapped to this gene. FPKM, expected number of Fragments Per Kilobase of transcript sequence per Millions base pairs sequenced, considers the effect of sequencing depth and gene length for the reads count at the same time
Differential expression analysis of two conditions/groups (two biological replicates per condition) was performed using the DESeq R package (1.18.0). DESeq.The resulting P-values were adjusted using the Benjamini and Hochberg’s approach for controlling the false discovery rate . Genes with an adjusted P-value <0.05 found by DESeq were assigned as differentially expressed.
Genome_build: ASM162521v1
Supplementary_files_format_and_content: tab-delimited text files include RPKM values for each Sample.

organism: Daucus carota

source_name: carrot

growth_protocol: grown in a greenhouse under 16 h:8 h light:dark photoperiod with day/night temperature regimes on ~ 25/20 °C

extract_protocol:
Total RNA was harvested from the frozen carrot samples with TRIzol reagent (Sigma-Aldrich, Inc) following the manufacturer’s protocol.
A total amount of 3 µg RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using NEBNext® Ultra™ RNA Library Prep Kit for Illumina® (NEB, USA) following manufacturer’s recommendations and index codes were added to attribute sequences to each sample.

tag: cultivar

value: Purple 68

value: taproot

tag: tissue type

value: phloem

tag: color

value: purple


title: Vehicle replicate 4, GFP- cells from 3 mice

description: mRNA abundance data

value: Vehicle-stimulated

tag: cell type


title: PfRrp6-FKBP-Shld1+_R_rep1_RNA-seq

tag: genotype


title: Transfection_control_RNA-seq

description:
Transfection_control
Transfection_control_Raw_Counts_sense_and_antisense_RNA.xlsx

value: WT


title: Vehicle replicate 3, GFP+ cells from 3 mice

description: mRNA abundance data


title: Odor replicate 2, GFP- cells from 3 mice [INA3-_030917]

description: mRNA abundance data

value: indole/ionone-stimulated


title: Human normal oral mucosal epithelial keratinocytes [Kera (I)]

city: Chiba　City

first: Yutaro

last: Kase

state: Chiba Prefecture

address: 1-8-1 Inohana, Chuo-ku, Chiba, 260–8670, Japan

country: Japan

institute: Department of Oral Science, Graduate School of Medicine, Chiba University

description:
Kera (I)
Cultured cell line

hyb_protocol: 0.6 μg of Cy3-labelled cRNA was fragmented at 60°C for 30 minutes in a reaction volume of 25 μl containing 1x Agilent fragmentation buffer and 2x Agilent blocking agent following the manufacturer’s instructions. On completion of the fragmentation reaction, 25 μl of 2x Agilent hybridization buffer was added to the fragmentation mixture and hybridized to SurePrint G3 Human GE 8x60K Microarray Ver3.0 (Agilent Technologies) for 17 hours at 65°C in a rotating Agilent hybridization oven. After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent Technologies) and 1 minute with 37°C GE Wash buffer 2 (Agilent Technologies).

scan_protocol: Slides were scanned immediately after washing on the Agilent SureScan Microarray Scanner (G2600D) using one color scan setting for 8x60k array slides (Scan Area 61x21.6 mm, Scan resolution 3um, Dye channel is set to Green PMT is set to 100%).

data_processing: The scanned images were analyzed with Feature Extraction Software 12.0.3.1 (Agilent Technologies) using default parameters to obtain background subtracted and spatially detrended Processed Signal intensities. Processed signal intensities were normalized by the global scaling method. A trimmed mean probe intensity was determined by removing 2% of the lower and the higher end of the probe intensities in order to calculate the scaling factor. Normalized signal intensities were then calculated from the target intensity on each array using the scaling factor, so that the trimmed mean target intensity of each array was arbitrarily set to 2500.

label_protocol: Cyanine3 (Cy3) labeled cRNA was prepared from 0.1 μg Total RNA using the Low Input Quick Amp Labeling Kit (Agilent Technologies) according to the manufacturer's instructions, followed by RNeasy column purification (QIAGEN). Dye incorporation and cRNA yield were checked with the NanoDrop ND-2000 Spectrophotometer.

extract_protocol: Total RNA was isolated using Trizol Reagent (Invitrogen, Carlsbad, CA, USA), according to the manufacturer’s instructions.

treatment_protocol: All OSCC-derived cells were grown in Dulbecco’s modified Eagle medium (DMEM) supplemented with 10% fetal bovine serum (FBS) and 50 units/ml penicillin and streptomycin. The cultures were incubated at 37 ºC in a humidified incubator with 5% CO2.

value: Normal oral mucosal epithelial keratinocytes


title: OV_30h_3 [RNA-seq]

city: Haikou

first: Feng

last: Pang

address: Renmin Road 58

institute: Hainan University

data_processing:
paired-end sequencing on an Illumina Hiseq4000
Cutadapt  was utilized to remove reads containing undetermined bases, adaptors, and low quality bases. Then sequence quality was verified using FastQC  (http://www.bioinformatics.babraham.ac.uk/projects/fastqc/).
Genome_build: GCF_001704415.1
Supplementary_files_format_and_content: FPKM

organism: Capra hircus

source_name: GSF cells infected by ORFV at 30h.p.i

extract_protocol: RNA libraries were prepared for sequencing using standard Illumina protocols

tag: tissue source

value: skin

value: primary goat skin fibroblast (GSF) cells

value: GSF cells infected by ORFV at 30h.p.i


title: Human normal oral mucosal epithelial keratinocytes [Kera (S)]

description:
Kera (S)
Cultured cell line


title: P68-ph-rep1

tag: age


title: Human normal oral mucosal epithelial keratinocytes [Kera (1)]

description:
Kera (1)
Cultured cell line


title: Vehicle replicate 4, GFP+ cells from 3 mice

description: mRNA abundance data

value: FACS sample, GFP+


title: Oral squamous carcinoma (OSCC) [HSC3 (2)]

description:
HSC3 (2)
Cultured cell line

source_name: Oral squamous carcinoma (OSCC)

value: Oral squamous carcinoma (OSCC)


title: Vehicle replicate 3, GFP- cells from 3 mice

description: mRNA abundance data

value: FACS sample, GFP-


title: Oral squamous carcinoma (OSCC) [HSC4 (2)]

description:
HSC4 (2)
Cultured cell line


title: P68-xy-rep2

value: xylem


title: OV_30h_2 [RNA-seq]


title: Vehicle replicate 2, GFP+ cells from 3 mice

description: mRNA abundance data


title: P68-xy-rep1


title: OV_30h_1 [RNA-seq]


title: Oral squamous carcinoma (OSCC) [Sa3 new]

description:
Sa3 new
Cultured cell line


title: NT non-transgenic seedlings

city: Granada

first: Jose

middle: Luis

last: Ruiz Rodriguez

state: Granada

address: Avda. del Conocimiento 17. P. T. Ciencias de la Salud

institute: IPBLN-CSIC

data_processing:
Sequenced reads were trimmed to remove adaptor sequences, and masked to remove low-complexity or low-quality sequence (reads in which N bases were more than 5% abundant, or base quality was lower than 15 for more than 20% of the bases were removed)
The sequenced "clean reads" from each sample (at least 4.44 Gb bases) were mapped to a Nicotiana tabacum reference genome using HISAT (v0.1.6-beta) with default parameters except for: --phred64 --sensitive --no-discordant --no-mixed -I 1 -X 1000
Novel transcripts prediction was performed using StringTie (v1.04) with default parameters except for: -f 0.3 -j 3 -c 5 -g 100 -s 10000 -p 8
CuffCompare (v2.2.1) with default parameters except for -p 12 was used to compare reconstructed transcripts to reference annotation, and coding potential of novel transcripts ('u','i','o','j' CuffCompare class code types) was predicted using CPC (v0.9-r2) with default parameters
The coding novel transcripts were merged with the reference Nicotiana tabacum transcriptome to get a complete reference to be used in gene expression analyses
Clean reads were mapped to the complete reference using Bowtie2 (v2.2.5) with default parameters except for -q --phred64 --sensitive --dpad 0 --gbar 99999999 --mp 1,1 --np 1 --score-min L,0,-0.1 -I 1 -X 1000 --no-mixed --no-discordant -p 1 -k 200
Gene expression levels for each sample were calculated with RSEM (v1.2.12) with default parameters
Using PoissonDis (Poisson Distribution), the expression results were analyzed to detect Differentially Expressed Genes (DEG) between the corresponding pairs of non-transgenic and transgenic samples. We considered genes with a Fold Change (Log2) > 1.5 as DEG
Genome_build: Nicotiana tabacum (Ntab-BX_AWOK-SS.fa.gz/Ntab-BX_AWOK-SS_Basma.mrna.annot.fna)
Supplementary_files_format_and_content: Processed tables showing the functional annotation of genes, the gene expression levels per condition and the output of the differential gene expression analyses bvetween each pair of conditions

organism: Nicotiana tabacum

source_name: Seedlings

growth_protocol: Tobacco (Nicotiana tabacum L. var. Xanthi) was used for all experiments. Seed sterilization, germination and seedling growth under controlled photoperiodic illumination conditions of 16 h light/8h dark, and 100 µmol m-2 s-1 fluence intensity for white-light, were as previously described (Prieto-Dapena et al., 2017 and references therein).

extract_protocol:
Total RNA samples were prepared by the LiCl method from 3-week old seedlings (in the 35:A9 experiment), or from seeds (in the DSA10:A9 and DS10:A4a experiments)
Library preparation and sequencing on an Illumina HiSeq 4000 sequencer using 100-bp paired-end reads protocol were performed by BGI Co., Ltd (https://en.genomics.cn/). Agilent 2100 Bioanaylzer and ABI StepOnePlus Real-Time PCR were used in quantification and in qualification of the sample libraries.

treatment_protocol: For sequencing, which was performed twice for each RNA sample, we used in each case equimolecular mixtures of 4, replicate RNA samples were prepared from corresponding pairs of transgenic (T: 35S:A9,  DS10:A9 or DS10:A4a), and sibling non-transgenic (NT) lines

value: Seedlings

tag: time

value: 3-weeks old

tag: genotype/variation

value: Non-transgenic


title: PHa-ph-rep2

value: Purple Haze

tag: tissue

value: taproot


title: Oral squamous carcinoma (OSCC) [Sa3 (2)]

description:
Sa3 (2)
Cultured cell line


title: OV_18h_3 [RNA-seq]

source_name: GSF cells infected by ORFV at 18h.p.i

value: GSF cells infected by ORFV at 18h.p.i


title: 35S:A9 transgenic seedlings


title: PHa-ph-rep1

value: phloem

value: purple


title: OV_18h_2 [RNA-seq]


title: Vehicle replicate 1, GFP- cells from 3 mice

description: mRNA abundance data

value: Vehicle-stimulated


title: NT non-transgenic seeds

source_name: Seeds

value: Seeds

value: 1 dpi


title: PHa-xy-rep2

value: orange


title: OV_18h_1 [RNA-seq]

value: skin

value: primary goat skin fibroblast (GSF) cells


title: PHa-xy-rep1


title: DS10:A4a transgenic seeds


title: Vehicle replicate 2, GFP- cells from 3 mice

description: mRNA abundance data


title: Oral squamous carcinoma (OSCC) [HSC2 (2)]

description:
HSC2 (2)
Cultured cell line

value: Oral squamous carcinoma (OSCC)


title: Odor replicate 4, GFP- cells from 3 mice

description: mRNA abundance data

source_name: Olfactory mucosa; bourgeonal-stimulated

value: bourgeonal-stimulated

value: FACS sample, GFP-


title: Vehicle replicate 1, GFP+ cells from 3 mice

description: mRNA abundance data

value: FACS sample, GFP+


title: H13-rep2

value: whole slice


title: Oral squamous carcinoma (OSCC) [HSC3 (1)]

description:
HSC3 (1)
Cultured cell line


title: DG_2 [RNA-seq]

source_name: mock-infected control

value: mock-infected control


title: H13-rep1


title: DG_1 [RNA-seq]


title: Odor replicate 3, GFP+ cells from 3 mice

description: mRNA abundance data


title: Oral squamous carcinoma (OSCC) [HSC4 (1)]

description:
HSC4 (1)
Cultured cell line


title: Oral squamous carcinoma (OSCC) [HSC2 (1)]

description:
HSC2 (1)
Cultured cell line


title: DG_3 [RNA-seq]


title: Odor replicate 4, GFP+ cells from 3 mice

description: mRNA abundance data


title: NT non-transgenic  seeds

value: Non-transgenic


title: Odor replicate 2, GFP+ cells from 3 mice

description: mRNA abundance data


title: DS10:A9 transgenic seeds


title: Odor replicate 1, GFP+ cells from 3 mice

description: mRNA abundance data


title: Odor replicate 1, GFP- cells from 3 mice

description: mRNA abundance data


title: Odor replicate 3, GFP- cells from 3 mice

description: mRNA abundance data


title: post-vaccination blood sample from animal R783 at w12.w12h [P168_R783_w12.0h]

status: Public on Mar 05 2020

city: Chicago

first: Slim

last: Fourati

state: Illinois

address: 300 E Superior St

department: Medicine

institute: Northwestern University

description: transcriptional profilling of blood taken at w12.0h after vaccination with ALV-SIV

hyb_protocol: The Agilent One-Color Microarray-Based Gene Expression Analysis Protocol was followed for hybridization and array washing. Fifty nanograms of each RNA sample were hybridized to one Agilent 8×60 rhesus macaque array (Agilent, G4102A).

scan_protocol: Dry slides were scanned on an Agilent DNA microarray scanner (Model G2505B) using the XDR setting.

data_processing: Raw images were analyzed using the Agilent Feature Extraction software. Extracted raw data were background corrected with the norm-exp method, quantile-normalized and log2 transformed for variance stability, using functions implemented in the R package limma. For each array, intensities of replicated probes were averaged.

organism: Macaca mulatta

source_name: Blood sample from animal R783

label_protocol: The Agilent One-Color Microarray-Based Gene Expression Analysis Protocol was followed for the Cy3-cDNA probe preparation.

extract_protocol: Total RNA was isolated from Paxgene tubes by the use of Paxgene Blood RNeasy minikits (Qiagen) following the manufacturer's protocol.

tag: donor id

tag: vaccine

value: ALV-SIV

tag: time of acquisition

tag: timepoint

tag: time of acquisition unit

value: week

value: blood


title: post-vaccination blood sample from animal R791 at w1.w1h [P168_R791_w1.0h]

description: transcriptional profilling of blood taken at w1.0h after vaccination with ALV-SIV

source_name: Blood sample from animal R791

value: not infected


title: Odor replicate 2, GFP- cells from 3 mice

description: mRNA abundance data

tag: agent


title: post-vaccination blood sample from animal R783 at w25.w25h [P168_R783_w25.0h]

description: transcriptional profilling of blood taken at w25.0h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R784 at w26.w26h [P168_R784_w26.0h]

description: transcriptional profilling of blood taken at w26.0h after vaccination with ALV-SIV

source_name: Blood sample from animal R784


title: post-vaccination blood sample from animal R781 at w12.w12h [P168_R781_w12.6h]

description: transcriptional profilling of blood taken at w12.6h after vaccination with ALV-SIV

source_name: Blood sample from animal R781


title: pre-vaccination blood sample from animal R781 at w0.w0h [P168_R781_w0.0h]

description: transcriptional profilling of blood taken pre-vaccination


title: post-vaccination blood sample from animal R781 at w4.w4h [P168_R781_w4.6h]

description: transcriptional profilling of blood taken at w4.6h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R760 at w24.w24h [P168_R760_w24.24h]

description: transcriptional profilling of blood taken at w24.24h after vaccination with ALV-SIV

source_name: Blood sample from animal R760


title: post-vaccination blood sample from animal R783 at w24.w24h [P168_R783_w24.24h]


title: post-vaccination blood sample from animal R781 at w12.w12h [P168_R781_w12.0h]


title: post-vaccination blood sample from animal R791 at w12.w12h [P168_R791_w12.6h]


title: post-vaccination blood sample from animal R768 at w12.w12h [P168_R768_w12.0h]

source_name: Blood sample from animal R768


title: post-vaccination blood sample from animal R783 at w0.w0h [P168_R783_w0.6h]

description: transcriptional profilling of blood taken at w0.6h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R776 at w2.w2h [P168_R776_w2.0h]

description: transcriptional profilling of blood taken at w2.0h after vaccination with ALV-SIV

source_name: Blood sample from animal R776


title: post-vaccination blood sample from animal R760 at w4.w4h [P168_R760_w4.6h]


title: post-vaccination blood sample from animal R768 at w5.w5h [P168_R768_w5.0h]

description: transcriptional profilling of blood taken at w5.0h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R767 at w12.w12h [P168_R767_w12.6h]

source_name: Blood sample from animal R767


title: post-vaccination blood sample from animal R806 at w5.w5h [P168_R806_w5.0h]

description: transcriptional profilling of blood taken at w5.0h after vaccination with NYV-SIV

source_name: Blood sample from animal R806

value: NYV-SIV


title: post-vaccination blood sample from animal R760 at w25.w25h [P168_R760_w25.0h]


title: post-vaccination blood sample from animal R785 at w2.w2h [P168_R785_w2.0h]

description: transcriptional profilling of blood taken at w2.0h after vaccination with NYV-SIV

source_name: Blood sample from animal R785


title: post-vaccination blood sample from animal R780 at w12.w12h [P168_R780_w12.24h]

description: transcriptional profilling of blood taken at w12.24h after vaccination with NYV-SIV

source_name: Blood sample from animal R780


title: pre-vaccination blood sample from animal R806 at w0.w0h [P168_R806_w0.0h]


title: post-vaccination blood sample from animal R790 at w5.w5h [P168_R790_w5.0h]

source_name: Blood sample from animal R790


title: post-vaccination blood sample from animal R808 at w12.w12h [P168_R808_w12.0h]

description: transcriptional profilling of blood taken at w12.0h after vaccination with NYV-SIV

source_name: Blood sample from animal R808


title: post-vaccination blood sample from animal R780 at w1.w1h [P168_R780_w1.0h]

description: transcriptional profilling of blood taken at w1.0h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R760 at w12.w12h [P168_R760_w12.0h]


title: post-vaccination blood sample from animal R776 at w4.w4h [P168_R776_w4.6h]


title: post-vaccination blood sample from animal R768 at w12.w12h [P168_R768_w12.24h]

description: transcriptional profilling of blood taken at w12.24h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R767 at w5.w5h [P168_R767_w5.0h]


title: post-vaccination blood sample from animal R767 at w0.w0h [P168_R767_w0.24h]

description: transcriptional profilling of blood taken at w0.24h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R765 at w25.w25h [P168_R765_w25.0h]

source_name: Blood sample from animal R765


title: post-vaccination blood sample from animal R767 at w12.w12h [P168_R767_w12.24h]


title: post-vaccination blood sample from animal R760 at w2.w2h [P168_R760_w2.0h]


title: post-vaccination blood sample from animal R776 at w5.w5h [P168_R776_w5.0h]


title: post-vaccination blood sample from animal P390 at w4.w4h [P168_P390_w4.6h]

source_name: Blood sample from animal P390


title: post-vaccination blood sample from animal P390 at w4.w4h [P168_P390_w4.0h]

description: transcriptional profilling of blood taken at w4.0h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal P390 at w0.w0h [P168_P390_w0.24h]


title: post-vaccination blood sample from animal R768 at w26.w26h [P168_R768_w26.0h]


title: post-vaccination blood sample from animal R765 at w12.w12h [P168_R765_w12.24h]


title: post-vaccination blood sample from animal R767 at w1.w1h [P168_R767_w1.0h]

description: transcriptional profilling of blood taken at w1.0h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R768 at w4.w4h [P168_R768_w4.0h]


title: post-vaccination blood sample from animal P397 at w14.w14h [P168_P397_w14.0h]

description: transcriptional profilling of blood taken at w14.0h after vaccination with NYV-SIV

source_name: Blood sample from animal P397


title: post-vaccination blood sample from animal R808 at w2.w2h [P168_R808_w2.0h]


title: post-vaccination blood sample from animal P390 at w12.w12h [P168_P390_w12.6h]

description: transcriptional profilling of blood taken at w12.6h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R776 at w26.w26h [P168_R776_w26.0h]

description: transcriptional profilling of blood taken at w26.0h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R808 at w14.w14h [P168_R808_w14.0h]


title: post-vaccination blood sample from animal R776 at w12.w12h [P168_R776_w12.6h]


title: post-vaccination blood sample from animal R785 at w14.w14h [P168_R785_w14.0h]


title: post-vaccination blood sample from animal R776 at w24.w24h [P168_R776_w24.24h]


title: post-vaccination blood sample from animal R808 at w26.w26h [P168_R808_w26.0h]

description: transcriptional profilling of blood taken at w26.0h after vaccination with NYV-SIV


title: pre-vaccination blood sample from animal R767 at w0.w0h [P168_R767_w0.0h]

description: transcriptional profilling of blood taken pre-vaccination


title: post-vaccination blood sample from animal R780 at w14.w14h [P168_R780_w14.0h]


title: post-vaccination blood sample from animal R790 at w14.w14h [P168_R790_w14.0h]


title: post-vaccination blood sample from animal R806 at w1.w1h [P168_R806_w1.0h]


title: post-vaccination blood sample from animal R765 at w12.w12h [P168_R765_w12.0h]

description: transcriptional profilling of blood taken at w12.0h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R779 at w14.w14h [P168_R779_w14.0h]

source_name: Blood sample from animal R779


title: post-vaccination blood sample from animal R808 at w4.w4h [P168_R808_w4.6h]

description: transcriptional profilling of blood taken at w4.6h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R779 at w1.w1h [P168_R779_w1.0h]


title: post-vaccination blood sample from animal R785 at w26.w26h [P168_R785_w26.0h]


title: post-vaccination blood sample from animal R779 at w12.w12h [P168_R779_w12.24h]


title: post-vaccination blood sample from animal R806 at w0.w0h [P168_R806_w0.6h]

description: transcriptional profilling of blood taken at w0.6h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R780 at w2.w2h [P168_R780_w2.0h]


title: post-vaccination blood sample from animal R779 at w4.w4h [P168_R779_w4.6h]


title: post-vaccination blood sample from animal R779 at w12.w12h [P168_R779_w12.0h]


title: post-vaccination blood sample from animal R790 at w0.w0h [P168_R790_w0.6h]


title: post-vaccination blood sample from animal R790 at w1.w1h [P168_R790_w1.0h]


title: post-vaccination blood sample from animal R806 at w4.w4h [P168_R806_w4.0h]

description: transcriptional profilling of blood taken at w4.0h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R785 at w1.w1h [P168_R785_w1.0h]


title: pre-vaccination blood sample from animal R779 at w0.w0h [P168_R779_w0.0h]


title: post-vaccination blood sample from animal R790 at w4.w4h [P168_R790_w4.0h]


title: post-vaccination blood sample from animal R806 at w12.w12h [P168_R806_w12.6h]

description: transcriptional profilling of blood taken at w12.6h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R779 at w2.w2h [P168_R779_w2.0h]

description: transcriptional profilling of blood taken at w2.0h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R808 at w0.w0h [P168_R808_w0.6h]


title: post-vaccination blood sample from animal R760 at w12.w12h [P168_R760_w12.6h]


title: post-vaccination blood sample from animal R806 at w12.w12h [P168_R806_w12.24h]

description: transcriptional profilling of blood taken at w12.24h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R779 at w4.w4h [P168_R779_w4.0h]


title: post-vaccination blood sample from animal R806 at w14.w14h [P168_R806_w14.0h]


title: post-vaccination blood sample from animal R790 at w12.w12h [P168_R790_w12.6h]


title: post-vaccination blood sample from animal R780 at w24.w24h [P168_R780_w24.24h]

description: transcriptional profilling of blood taken at w24.24h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R779 at w24.w24h [P168_R779_w24.24h]


title: post-vaccination blood sample from animal R785 at w0.w0h [P168_R785_w0.6h]


title: post-vaccination blood sample from animal R806 at w0.w0h [P168_R806_w0.24h]

description: transcriptional profilling of blood taken at w0.24h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R785 at w0.w0h [P168_R785_w0.24h]


title: pre-vaccination blood sample from animal R780 at w0.w0h [P168_R780_w0.0h]


title: post-vaccination blood sample from animal R779 at w25.w25h [P168_R779_w25.0h]

description: transcriptional profilling of blood taken at w25.0h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R806 at w25.w25h [P168_R806_w25.0h]


title: post-vaccination blood sample from animal R790 at w24.w24h [P168_R790_w24.24h]


title: post-vaccination blood sample from animal R808 at w5.w5h [P168_R808_w5.0h]

description: transcriptional profilling of blood taken at w5.0h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R780 at w5.w5h [P168_R780_w5.0h]


title: post-vaccination blood sample from animal R780 at w12.w12h [P168_R780_w12.6h]


title: post-vaccination blood sample from animal R808 at w0.w0h [P168_R808_w0.24h]


title: post-vaccination blood sample from animal R779 at w0.w0h [P168_R779_w0.6h]


title: post-vaccination blood sample from animal R785 at w12.w12h [P168_R785_w12.0h]

description: transcriptional profilling of blood taken at w12.0h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R790 at w26.w26h [P168_R790_w26.0h]


title: post-vaccination blood sample from animal R790 at w4.w4h [P168_R790_w4.6h]


title: post-vaccination blood sample from animal R785 at w4.w4h [P168_R785_w4.0h]


title: post-vaccination blood sample from animal R790 at w12.w12h [P168_R790_w12.24h]


title: pre-vaccination blood sample from animal R808 at w0.w0h [P168_R808_w0.0h]


title: post-vaccination blood sample from animal R780 at w25.w25h [P168_R780_w25.0h]


title: post-vaccination blood sample from animal R790 at w12.w12h [P168_R790_w12.0h]


title: pre-vaccination blood sample from animal R790 at w0.w0h [P168_R790_w0.0h]


title: post-vaccination blood sample from animal R785 at w4.w4h [P168_R785_w4.6h]


title: post-vaccination blood sample from animal R785 at w5.w5h [P168_R785_w5.0h]


title: pre-vaccination blood sample from animal R785 at w0.w0h [P168_R785_w0.0h]


title: post-vaccination blood sample from animal R785 at w25.w25h [P168_R785_w25.0h]


title: post-vaccination blood sample from animal R808 at w12.w12h [P168_R808_w12.6h]


title: post-vaccination blood sample from animal R808 at w24.w24h [P168_R808_w24.24h]


title: post-vaccination blood sample from animal R806 at w4.w4h [P168_R806_w4.6h]


title: post-vaccination blood sample from animal R785 at w12.w12h [P168_R785_w12.24h]


title: post-vaccination blood sample from animal R790 at w25.w25h [P168_R790_w25.0h]


title: post-vaccination blood sample from animal R779 at w5.w5h [P168_R779_w5.0h]


title: post-vaccination blood sample from animal R806 at w2.w2h [P168_R806_w2.0h]


title: post-vaccination blood sample from animal R779 at w26.w26h [P168_R779_w26.0h]


title: post-vaccination blood sample from animal R780 at w4.w4h [P168_R780_w4.0h]


title: post-vaccination blood sample from animal R780 at w26.w26h [P168_R780_w26.0h]


title: post-vaccination blood sample from animal R780 at w4.w4h [P168_R780_w4.6h]


title: post-vaccination blood sample from animal R779 at w0.w0h [P168_R779_w0.24h]


title: post-vaccination blood sample from animal R779 at w12.w12h [P168_R779_w12.6h]


title: post-vaccination blood sample from animal R806 at w26.w26h [P168_R806_w26.0h]


title: post-vaccination blood sample from animal R780 at w0.w0h [P168_R780_w0.6h]


title: post-vaccination blood sample from animal R808 at w25.w25h [P168_R808_w25.0h]


title: post-vaccination blood sample from animal R780 at w12.w12h [P168_R780_w12.0h]


title: post-vaccination blood sample from animal R780 at w0.w0h [P168_R780_w0.24h]


title: post-vaccination blood sample from animal R808 at w1.w1h [P168_R808_w1.0h]

description: transcriptional profilling of blood taken at w1.0h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R806 at w12.w12h [P168_R806_w12.0h]


title: post-vaccination blood sample from animal R808 at w12.w12h [P168_R808_w12.24h]


title: post-vaccination blood sample from animal R785 at w12.w12h [P168_R785_w12.6h]


title: post-vaccination blood sample from animal R790 at w0.w0h [P168_R790_w0.24h]


title: post-vaccination blood sample from animal R790 at w2.w2h [P168_R790_w2.0h]


title: post-vaccination blood sample from animal R785 at w24.w24h [P168_R785_w24.24h]


title: post-vaccination blood sample from animal R773 at w1.w1h [P168_R773_w1.0h]

source_name: Blood sample from animal R773


title: post-vaccination blood sample from animal P397 at w12.w12h [P168_P397_w12.24h]


title: post-vaccination blood sample from animal R764 at w0.w0h [P168_R764_w0.6h]

description: transcriptional profilling of blood taken at w0.6h after vaccination with ALV-Control

source_name: Blood sample from animal R764

value: ALV-Control


title: post-vaccination blood sample from animal R770 at w14.w14h [P168_R770_w14.0h]

description: transcriptional profilling of blood taken at w14.0h after vaccination with NYV-SIV

source_name: Blood sample from animal R770


title: post-vaccination blood sample from animal R772 at w14.w14h [P168_R772_w14.0h]

source_name: Blood sample from animal R772


title: pre-vaccination blood sample from animal R766 at w0.w0h [P168_R766_w0.0h]

source_name: Blood sample from animal R766


title: post-vaccination blood sample from animal R766 at w0.w0h [P168_R766_w0.6h]


title: post-vaccination blood sample from animal P397 at w5.w5h [P168_P397_w5.0h]


title: post-vaccination blood sample from animal R773 at w14.w14h [P168_R773_w14.0h]


title: post-vaccination blood sample from animal R766 at w4.w4h [P168_R766_w4.6h]


title: post-vaccination blood sample from animal R773 at w24.w24h [P168_R773_w24.24h]


title: post-vaccination blood sample from animal R773 at w0.w0h [P168_R773_w0.24h]


title: post-vaccination blood sample from animal R769 at w0.w0h [P168_R769_w0.24h]

source_name: Blood sample from animal R769


title: post-vaccination blood sample from animal R770 at w5.w5h [P168_R770_w5.0h]


title: post-vaccination blood sample from animal R766 at w14.w14h [P168_R766_w14.0h]


title: pre-vaccination blood sample from animal R773 at w0.w0h [P168_R773_w0.0h]


title: post-vaccination blood sample from animal R769 at w12.w12h [P168_R769_w12.6h]


title: post-vaccination blood sample from animal R772 at w0.w0h [P168_R772_w0.24h]


title: post-vaccination blood sample from animal R766 at w0.w0h [P168_R766_w0.24h]


title: post-vaccination blood sample from animal R770 at w4.w4h [P168_R770_w4.6h]


title: post-vaccination blood sample from animal R769 at w12.w12h [P168_R769_w12.24h]


title: post-vaccination blood sample from animal R772 at w2.w2h [P168_R772_w2.0h]


title: post-vaccination blood sample from animal R772 at w4.w4h [P168_R772_w4.0h]


title: post-vaccination blood sample from animal R770 at w12.w12h [P168_R770_w12.24h]


title: post-vaccination blood sample from animal P397 at w25.w25h [P168_P397_w25.0h]


title: post-vaccination blood sample from animal R772 at w25.w25h [P168_R772_w25.0h]


title: post-vaccination blood sample from animal R768 at w4.w4h [P168_R768_w4.6h]

description: transcriptional profilling of blood taken at w4.6h after vaccination with ALV-SIV

source_name: Blood sample from animal R768


title: post-vaccination blood sample from animal R765 at w12.w12h [P168_R765_w12.6h]

description: transcriptional profilling of blood taken at w12.6h after vaccination with ALV-SIV


title: pre-vaccination blood sample from animal R776 at w0.w0h [P168_R776_w0.0h]

description: transcriptional profilling of blood taken pre-vaccination

source_name: Blood sample from animal R776


title: post-vaccination blood sample from animal P390 at w24.w24h [P168_P390_w24.24h]

description: transcriptional profilling of blood taken at w24.24h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R772 at w5.w5h [P168_R772_w5.0h]


title: post-vaccination blood sample from animal R776 at w12.w12h [P168_R776_w12.24h]

description: transcriptional profilling of blood taken at w12.24h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R760 at w12.w12h [P168_R760_w12.24h]

source_name: Blood sample from animal R760


title: post-vaccination blood sample from animal P390 at w26.w26h [P168_P390_w26.0h]

description: transcriptional profilling of blood taken at w26.0h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R767 at w24.w24h [P168_R767_w24.24h]

source_name: Blood sample from animal R767


title: post-vaccination blood sample from animal R767 at w4.w4h [P168_R767_w4.0h]

description: transcriptional profilling of blood taken at w4.0h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R765 at w1.w1h [P168_R765_w1.0h]

description: transcriptional profilling of blood taken at w1.0h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R776 at w0.w0h [P168_R776_w0.24h]

description: transcriptional profilling of blood taken at w0.24h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal P409 at w0.w0h [P168_P409_w0.24h]

source_name: Blood sample from animal P409


title: pre-vaccination blood sample from animal P409 at w0.w0h [P168_P409_w0.0h]


title: post-vaccination blood sample from animal R768 at w12.w12h [P168_R768_w12.6h]


title: post-vaccination blood sample from animal R760 at w26.w26h [P168_R760_w26.0h]


title: post-vaccination blood sample from animal R765 at w5.w5h [P168_R765_w5.0h]

description: transcriptional profilling of blood taken at w5.0h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R781 at w24.w24h [P168_R781_w24.24h]

source_name: Blood sample from animal R781


title: post-vaccination blood sample from animal R765 at w4.w4h [P168_R765_w4.0h]


title: post-vaccination blood sample from animal P403 at w5.w5h [P168_P403_w5.0h]

description: transcriptional profilling of blood taken at w5.0h after vaccination with ALV-Control

source_name: Blood sample from animal P403


title: post-vaccination blood sample from animal R784 at w0.w0h [P168_R784_w0.6h]

description: transcriptional profilling of blood taken at w0.6h after vaccination with ALV-SIV

source_name: Blood sample from animal R784


title: post-vaccination blood sample from animal R784 at w4.w4h [P168_R784_w4.0h]


title: post-vaccination blood sample from animal R791 at w26.w26h [P168_R791_w26.0h]

source_name: Blood sample from animal R791


title: post-vaccination blood sample from animal R765 at w0.w0h [P168_R765_w0.24h]

source_name: Blood sample from animal R765


title: post-vaccination blood sample from animal P403 at w4.w4h [P168_P403_w4.6h]

description: transcriptional profilling of blood taken at w4.6h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R771 at w25.w25h [P168_R771_w25.0h]

description: transcriptional profilling of blood taken at w25.0h after vaccination with ALV-Control

source_name: Blood sample from animal R771


title: post-vaccination blood sample from animal P409 at w1.w1h [P168_P409_w1.0h]


title: post-vaccination blood sample from animal R771 at w5.w5h [P168_R771_w5.0h]


title: post-vaccination blood sample from animal R770 at w2.w2h [P168_R770_w2.0h]

description: transcriptional profilling of blood taken at w2.0h after vaccination with NYV-SIV


title: pre-vaccination blood sample from animal P403 at w0.w0h [P168_P403_w0.0h]


title: pre-vaccination blood sample from animal R771 at w0.w0h [P168_R771_w0.0h]


title: post-vaccination blood sample from animal R761 at w2.w2h [P168_R761_w2.0h]

description: transcriptional profilling of blood taken at w2.0h after vaccination with ALV-SIV

source_name: Blood sample from animal R761


title: post-vaccination blood sample from animal P403 at w0.w0h [P168_P403_w0.6h]

description: transcriptional profilling of blood taken at w0.6h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R794 at w0.w0h [P168_R794_w0.6h]

source_name: Blood sample from animal R794


title: post-vaccination blood sample from animal P409 at w14.w14h [P168_P409_w14.0h]

description: transcriptional profilling of blood taken at w14.0h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R764 at w26.w26h [P168_R764_w26.0h]

description: transcriptional profilling of blood taken at w26.0h after vaccination with ALV-Control

source_name: Blood sample from animal R764


title: post-vaccination blood sample from animal R784 at w12.w12h [P168_R784_w12.6h]

description: transcriptional profilling of blood taken at w12.6h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R794 at w24.w24h [P168_R794_w24.24h]

description: transcriptional profilling of blood taken at w24.24h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R771 at w2.w2h [P168_R771_w2.0h]

description: transcriptional profilling of blood taken at w2.0h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R817 at w14.w14h [P168_R817_w14.0h]

description: transcriptional profilling of blood taken at w14.0h after vaccination with ALV-Control

source_name: Blood sample from animal R817


title: post-vaccination blood sample from animal R767 at w4.w4h [P168_R767_w4.6h]

description: transcriptional profilling of blood taken at w4.6h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal P403 at w0.w0h [P168_P403_w0.24h]

description: transcriptional profilling of blood taken at w0.24h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R761 at w14.w14h [P168_R761_w14.0h]


title: post-vaccination blood sample from animal R771 at w14.w14h [P168_R771_w14.0h]


title: post-vaccination blood sample from animal P403 at w14.w14h [P168_P403_w14.0h]


title: post-vaccination blood sample from animal R806 at w24.w24h [P168_R806_w24.24h]

description: transcriptional profilling of blood taken at w24.24h after vaccination with NYV-SIV

source_name: Blood sample from animal R806


title: post-vaccination blood sample from animal P403 at w24.w24h [P168_P403_w24.24h]


title: pre-vaccination blood sample from animal R794 at w0.w0h [P168_R794_w0.0h]

description: transcriptional profilling of blood taken pre-vaccination


title: post-vaccination blood sample from animal R774 at w14.w14h [P168_R774_w14.0h]

source_name: Blood sample from animal R774


title: post-vaccination blood sample from animal R764 at w14.w14h [P168_R764_w14.0h]


title: post-vaccination blood sample from animal P403 at w2.w2h [P168_P403_w2.0h]


title: post-vaccination blood sample from animal R794 at w14.w14h [P168_R794_w14.0h]


title: pre-vaccination blood sample from animal R817 at w0.w0h [P168_R817_w0.0h]


title: post-vaccination blood sample from animal R774 at w0.w0h [P168_R774_w0.24h]


title: post-vaccination blood sample from animal R774 at w12.w12h [P168_R774_w12.24h]

description: transcriptional profilling of blood taken at w12.24h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R772 at w26.w26h [P168_R772_w26.0h]

description: transcriptional profilling of blood taken at w26.0h after vaccination with NYV-SIV

source_name: Blood sample from animal R772


title: post-vaccination blood sample from animal R769 at w14.w14h [P168_R769_w14.0h]

description: transcriptional profilling of blood taken at w14.0h after vaccination with NYV-SIV

source_name: Blood sample from animal R769


title: post-vaccination blood sample from animal R817 at w12.w12h [P168_R817_w12.24h]


title: post-vaccination blood sample from animal R774 at w1.w1h [P168_R774_w1.0h]

description: transcriptional profilling of blood taken at w1.0h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R817 at w12.w12h [P168_R817_w12.6h]

description: transcriptional profilling of blood taken at w12.6h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R817 at w1.w1h [P168_R817_w1.0h]


title: post-vaccination blood sample from animal R794 at w4.w4h [P168_R794_w4.6h]

description: transcriptional profilling of blood taken at w4.6h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R764 at w1.w1h [P168_R764_w1.0h]


title: post-vaccination blood sample from animal R817 at w2.w2h [P168_R817_w2.0h]


title: post-vaccination blood sample from animal R817 at w26.w26h [P168_R817_w26.0h]


title: post-vaccination blood sample from animal R771 at w12.w12h [P168_R771_w12.6h]


title: post-vaccination blood sample from animal R794 at w26.w26h [P168_R794_w26.0h]


title: post-vaccination blood sample from animal R794 at w12.w12h [P168_R794_w12.24h]


title: post-vaccination blood sample from animal R771 at w4.w4h [P168_R771_w4.6h]


title: post-vaccination blood sample from animal R771 at w0.w0h [P168_R771_w0.6h]

description: transcriptional profilling of blood taken at w0.6h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R771 at w12.w12h [P168_R771_w12.0h]

description: transcriptional profilling of blood taken at w12.0h after vaccination with ALV-Control


title: pre-vaccination blood sample from animal R764 at w0.w0h [P168_R764_w0.0h]


title: post-vaccination blood sample from animal R764 at w5.w5h [P168_R764_w5.0h]

description: transcriptional profilling of blood taken at w5.0h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R817 at w5.w5h [P168_R817_w5.0h]


title: post-vaccination blood sample from animal R774 at w26.w26h [P168_R774_w26.0h]

description: transcriptional profilling of blood taken at w26.0h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R774 at w0.w0h [P168_R774_w0.6h]


title: post-vaccination blood sample from animal R771 at w26.w26h [P168_R771_w26.0h]


title: post-vaccination blood sample from animal R794 at w25.w25h [P168_R794_w25.0h]

description: transcriptional profilling of blood taken at w25.0h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R817 at w4.w4h [P168_R817_w4.0h]

description: transcriptional profilling of blood taken at w4.0h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R771 at w12.w12h [P168_R771_w12.24h]


title: post-vaccination blood sample from animal P403 at w12.w12h [P168_P403_w12.6h]


title: post-vaccination blood sample from animal P403 at w25.w25h [P168_P403_w25.0h]


title: post-vaccination blood sample from animal R764 at w25.w25h [P168_R764_w25.0h]


title: post-vaccination blood sample from animal R764 at w4.w4h [P168_R764_w4.6h]


title: post-vaccination blood sample from animal R817 at w12.w12h [P168_R817_w12.0h]


title: post-vaccination blood sample from animal R764 at w24.w24h [P168_R764_w24.24h]

description: transcriptional profilling of blood taken at w24.24h after vaccination with ALV-Control


title: post-vaccination blood sample from animal P403 at w12.w12h [P168_P403_w12.0h]


title: post-vaccination blood sample from animal R794 at w12.w12h [P168_R794_w12.6h]


title: pre-vaccination blood sample from animal R774 at w0.w0h [P168_R774_w0.0h]


title: post-vaccination blood sample from animal R774 at w4.w4h [P168_R774_w4.6h]


title: post-vaccination blood sample from animal P403 at w26.w26h [P168_P403_w26.0h]


title: post-vaccination blood sample from animal P403 at w12.w12h [P168_P403_w12.24h]


title: post-vaccination blood sample from animal R774 at w24.w24h [P168_R774_w24.24h]


title: post-vaccination blood sample from animal R774 at w25.w25h [P168_R774_w25.0h]


title: post-vaccination blood sample from animal R817 at w24.w24h [P168_R817_w24.24h]


title: post-vaccination blood sample from animal R794 at w0.w0h [P168_R794_w0.24h]


title: post-vaccination blood sample from animal R817 at w0.w0h [P168_R817_w0.24h]


title: post-vaccination blood sample from animal R778 at w14.w14h [P168_R778_w14.0h]

description: transcriptional profilling of blood taken at w14.0h after vaccination with NYV-Control

source_name: Blood sample from animal R778

value: NYV-Control


title: post-vaccination blood sample from animal R763 at w14.w14h [P168_R763_w14.0h]

source_name: Blood sample from animal R763


title: post-vaccination blood sample from animal R764 at w4.w4h [P168_R764_w4.0h]


title: post-vaccination blood sample from animal R782 at w14.w14h [P168_R782_w14.0h]

source_name: Blood sample from animal R782


title: post-vaccination blood sample from animal R794 at w12.w12h [P168_R794_w12.0h]


title: post-vaccination blood sample from animal R794 at w4.w4h [P168_R794_w4.0h]


title: post-vaccination blood sample from animal R794 at w5.w5h [P168_R794_w5.0h]


title: post-vaccination blood sample from animal R764 at w12.w12h [P168_R764_w12.6h]


title: post-vaccination blood sample from animal P404 at w14.w14h [P168_P404_w14.0h]

source_name: Blood sample from animal P404


title: post-vaccination blood sample from animal R814 at w14.w14h [P168_R814_w14.0h]

source_name: Blood sample from animal R814


title: post-vaccination blood sample from animal R771 at w0.w0h [P168_R771_w0.24h]

description: transcriptional profilling of blood taken at w0.24h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R762 at w14.w14h [P168_R762_w14.0h]

source_name: Blood sample from animal R762


title: post-vaccination blood sample from animal R817 at w0.w0h [P168_R817_w0.6h]


title: post-vaccination blood sample from animal R771 at w24.w24h [P168_R771_w24.24h]


title: post-vaccination blood sample from animal P404 at w26.w26h [P168_P404_w26.0h]

description: transcriptional profilling of blood taken at w26.0h after vaccination with NYV-Control


title: post-vaccination blood sample from animal P404 at w2.w2h [P168_P404_w2.0h]

description: transcriptional profilling of blood taken at w2.0h after vaccination with NYV-Control


title: pre-vaccination blood sample from animal R814 at w0.w0h [P168_R814_w0.0h]

description: transcriptional profilling of blood taken pre-vaccination


title: post-vaccination blood sample from animal R782 at w5.w5h [P168_R782_w5.0h]

description: transcriptional profilling of blood taken at w5.0h after vaccination with NYV-Control


title: post-vaccination blood sample from animal R794 at w1.w1h [P168_R794_w1.0h]


title: post-vaccination blood sample from animal R778 at w12.w12h [P168_R778_w12.0h]

description: transcriptional profilling of blood taken at w12.0h after vaccination with NYV-Control


title: post-vaccination blood sample from animal R763 at w0.w0h [P168_R763_w0.6h]

description: transcriptional profilling of blood taken at w0.6h after vaccination with NYV-Control


title: post-vaccination blood sample from animal R778 at w12.w12h [P168_R778_w12.6h]

description: transcriptional profilling of blood taken at w12.6h after vaccination with NYV-Control


title: post-vaccination blood sample from animal R814 at w4.w4h [P168_R814_w4.0h]

description: transcriptional profilling of blood taken at w4.0h after vaccination with NYV-Control


title: post-vaccination blood sample from animal R782 at w0.w0h [P168_R782_w0.24h]

description: transcriptional profilling of blood taken at w0.24h after vaccination with NYV-Control


title: post-vaccination blood sample from animal R782 at w4.w4h [P168_R782_w4.0h]


title: post-vaccination blood sample from animal R782 at w2.w2h [P168_R782_w2.0h]


title: pre-vaccination blood sample from animal R762 at w0.w0h [P168_R762_w0.0h]


title: post-vaccination blood sample from animal R814 at w26.w26h [P168_R814_w26.0h]


title: post-vaccination blood sample from animal R814 at w12.w12h [P168_R814_w12.24h]

description: transcriptional profilling of blood taken at w12.24h after vaccination with NYV-Control


title: post-vaccination blood sample from animal R764 at w12.w12h [P168_R764_w12.24h]

description: transcriptional profilling of blood taken at w12.24h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R763 at w12.w12h [P168_R763_w12.0h]


title: post-vaccination blood sample from animal R774 at w4.w4h [P168_R774_w4.0h]


title: post-vaccination blood sample from animal R762 at w1.w1h [P168_R762_w1.0h]

description: transcriptional profilling of blood taken at w1.0h after vaccination with NYV-Control


title: post-vaccination blood sample from animal R763 at w4.w4h [P168_R763_w4.6h]

description: transcriptional profilling of blood taken at w4.6h after vaccination with NYV-Control


title: post-vaccination blood sample from animal P404 at w25.w25h [P168_P404_w25.0h]

description: transcriptional profilling of blood taken at w25.0h after vaccination with NYV-Control


title: post-vaccination blood sample from animal R762 at w12.w12h [P168_R762_w12.6h]


title: post-vaccination blood sample from animal R778 at w2.w2h [P168_R778_w2.0h]


title: post-vaccination blood sample from animal R814 at w12.w12h [P168_R814_w12.0h]


title: post-vaccination blood sample from animal R778 at w4.w4h [P168_R778_w4.6h]


title: post-vaccination blood sample from animal R763 at w1.w1h [P168_R763_w1.0h]


title: post-vaccination blood sample from animal R763 at w4.w4h [P168_R763_w4.0h]


title: post-vaccination blood sample from animal R814 at w4.w4h [P168_R814_w4.6h]


title: post-vaccination blood sample from animal P404 at w12.w12h [P168_P404_w12.0h]


title: post-vaccination blood sample from animal R782 at w12.w12h [P168_R782_w12.0h]


title: post-vaccination blood sample from animal R814 at w2.w2h [P168_R814_w2.0h]


title: post-vaccination blood sample from animal R778 at w12.w12h [P168_R778_w12.24h]


title: post-vaccination blood sample from animal P404 at w24.w24h [P168_P404_w24.24h]

description: transcriptional profilling of blood taken at w24.24h after vaccination with NYV-Control


title: post-vaccination blood sample from animal R814 at w1.w1h [P168_R814_w1.0h]


title: post-vaccination blood sample from animal R778 at w0.w0h [P168_R778_w0.6h]


title: post-vaccination blood sample from animal P404 at w4.w4h [P168_P404_w4.0h]


title: post-vaccination blood sample from animal P404 at w0.w0h [P168_P404_w0.6h]


title: post-vaccination blood sample from animal R763 at w26.w26h [P168_R763_w26.0h]


title: post-vaccination blood sample from animal R814 at w5.w5h [P168_R814_w5.0h]


title: post-vaccination blood sample from animal R762 at w4.w4h [P168_R762_w4.6h]


title: post-vaccination blood sample from animal R814 at w25.w25h [P168_R814_w25.0h]


title: post-vaccination blood sample from animal R763 at w25.w25h [P168_R763_w25.0h]


title: post-vaccination blood sample from animal P404 at w5.w5h [P168_P404_w5.0h]


title: pre-vaccination blood sample from animal R763 at w0.w0h [P168_R763_w0.0h]


title: post-vaccination blood sample from animal R762 at w4.w4h [P168_R762_w4.0h]


title: post-vaccination blood sample from animal R814 at w24.w24h [P168_R814_w24.24h]


title: post-vaccination blood sample from animal R763 at w5.w5h [P168_R763_w5.0h]


title: post-vaccination blood sample from animal R778 at w24.w24h [P168_R778_w24.24h]


title: post-vaccination blood sample from animal P404 at w0.w0h [P168_P404_w0.24h]


title: post-vaccination blood sample from animal R814 at w0.w0h [P168_R814_w0.6h]


title: post-vaccination blood sample from animal R762 at w12.w12h [P168_R762_w12.0h]


title: post-vaccination blood sample from animal R782 at w26.w26h [P168_R782_w26.0h]


title: post-vaccination blood sample from animal R763 at w24.w24h [P168_R763_w24.24h]


title: post-vaccination blood sample from animal R778 at w0.w0h [P168_R778_w0.24h]


title: post-vaccination blood sample from animal R814 at w12.w12h [P168_R814_w12.6h]


title: post-vaccination blood sample from animal R762 at w24.w24h [P168_R762_w24.24h]


title: post-vaccination blood sample from animal R782 at w24.w24h [P168_R782_w24.24h]


title: post-vaccination blood sample from animal R762 at w26.w26h [P168_R762_w26.0h]


title: post-vaccination blood sample from animal R782 at w1.w1h [P168_R782_w1.0h]


title: post-vaccination blood sample from animal R782 at w4.w4h [P168_R782_w4.6h]


title: post-vaccination blood sample from animal R778 at w1.w1h [P168_R778_w1.0h]


title: post-vaccination blood sample from animal R762 at w12.w12h [P168_R762_w12.24h]


title: post-vaccination blood sample from animal P404 at w12.w12h [P168_P404_w12.24h]


title: pre-vaccination blood sample from animal P404 at w0.w0h [P168_P404_w0.0h]


title: post-vaccination blood sample from animal P404 at w1.w1h [P168_P404_w1.0h]


title: post-vaccination blood sample from animal R762 at w2.w2h [P168_R762_w2.0h]


title: post-vaccination blood sample from animal R762 at w25.w25h [P168_R762_w25.0h]


title: post-vaccination blood sample from animal R778 at w4.w4h [P168_R778_w4.0h]


title: post-vaccination blood sample from animal P404 at w4.w4h [P168_P404_w4.6h]


title: post-vaccination blood sample from animal R778 at w25.w25h [P168_R778_w25.0h]


title: post-vaccination blood sample from animal R782 at w0.w0h [P168_R782_w0.6h]


title: post-vaccination blood sample from animal R762 at w5.w5h [P168_R762_w5.0h]


title: post-vaccination blood sample from animal R778 at w5.w5h [P168_R778_w5.0h]


title: post-vaccination blood sample from animal R762 at w0.w0h [P168_R762_w0.24h]


title: post-vaccination blood sample from animal R763 at w12.w12h [P168_R763_w12.24h]


title: post-vaccination blood sample from animal R782 at w12.w12h [P168_R782_w12.6h]


title: post-vaccination blood sample from animal R782 at w25.w25h [P168_R782_w25.0h]


title: post-vaccination blood sample from animal R778 at w26.w26h [P168_R778_w26.0h]


title: post-vaccination blood sample from animal R763 at w0.w0h [P168_R763_w0.24h]


title: post-vaccination blood sample from animal R782 at w12.w12h [P168_R782_w12.24h]


title: post-vaccination blood sample from animal P404 at w12.w12h [P168_P404_w12.6h]


title: post-vaccination blood sample from animal R762 at w0.w0h [P168_R762_w0.6h]


title: pre-vaccination blood sample from animal R782 at w0.w0h [P168_R782_w0.0h]


title: pre-vaccination blood sample from animal R778 at w0.w0h [P168_R778_w0.0h]


title: post-vaccination blood sample from animal R765 at w24.w24h [P168_R765_w24.24h]

description: transcriptional profilling of blood taken at w24.24h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R767 at w26.w26h [P168_R767_w26.0h]

description: transcriptional profilling of blood taken at w26.0h after vaccination with ALV-SIV

source_name: Blood sample from animal R767


title: post-vaccination blood sample from animal P390 at w25.w25h [P168_P390_w25.0h]

description: transcriptional profilling of blood taken at w25.0h after vaccination with ALV-SIV

source_name: Blood sample from animal P390


title: post-vaccination blood sample from animal R760 at w4.w4h [P168_R760_w4.0h]

description: transcriptional profilling of blood taken at w4.0h after vaccination with ALV-SIV

source_name: Blood sample from animal R760


title: post-vaccination blood sample from animal R767 at w2.w2h [P168_R767_w2.0h]

description: transcriptional profilling of blood taken at w2.0h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R763 at w2.w2h [P168_R763_w2.0h]

description: transcriptional profilling of blood taken at w2.0h after vaccination with NYV-Control


title: post-vaccination blood sample from animal P390 at w12.w12h [P168_P390_w12.24h]

description: transcriptional profilling of blood taken at w12.24h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R763 at w12.w12h [P168_R763_w12.6h]


title: post-vaccination blood sample from animal P390 at w1.w1h [P168_P390_w1.0h]

description: transcriptional profilling of blood taken at w1.0h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R814 at w0.w0h [P168_R814_w0.24h]


title: post-vaccination blood sample from animal R776 at w25.w25h [P168_R776_w25.0h]

source_name: Blood sample from animal R776


title: post-vaccination blood sample from animal R765 at w0.w0h [P168_R765_w0.6h]

description: transcriptional profilling of blood taken at w0.6h after vaccination with ALV-SIV

source_name: Blood sample from animal R765


title: post-vaccination blood sample from animal R765 at w26.w26h [P168_R765_w26.0h]


title: post-vaccination blood sample from animal R768 at w24.w24h [P168_R768_w24.24h]

source_name: Blood sample from animal R768


title: post-vaccination blood sample from animal R776 at w12.w12h [P168_R776_w12.0h]

description: transcriptional profilling of blood taken at w12.0h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R767 at w0.w0h [P168_R767_w0.6h]


title: post-vaccination blood sample from animal P390 at w2.w2h [P168_P390_w2.0h]


title: pre-vaccination blood sample from animal R760 at w0.w0h [P168_R760_w0.0h]

description: transcriptional profilling of blood taken pre-vaccination


title: pre-vaccination blood sample from animal P390 at w0.w0h [P168_P390_w0.0h]


title: post-vaccination blood sample from animal R767 at w25.w25h [P168_R767_w25.0h]


title: post-vaccination blood sample from animal R760 at w1.w1h [P168_R760_w1.0h]


title: post-vaccination blood sample from animal R768 at w0.w0h [P168_R768_w0.6h]


title: post-vaccination blood sample from animal R765 at w2.w2h [P168_R765_w2.0h]


title: post-vaccination blood sample from animal R768 at w0.w0h [P168_R768_w0.24h]

description: transcriptional profilling of blood taken at w0.24h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal P390 at w12.w12h [P168_P390_w12.0h]


title: post-vaccination blood sample from animal R760 at w0.w0h [P168_R760_w0.6h]


title: post-vaccination blood sample from animal R760 at w0.w0h [P168_R760_w0.24h]


title: post-vaccination blood sample from animal R776 at w4.w4h [P168_R776_w4.0h]


title: post-vaccination blood sample from animal P409 at w12.w12h [P168_P409_w12.0h]

source_name: Blood sample from animal P409


title: post-vaccination blood sample from animal R765 at w4.w4h [P168_R765_w4.6h]

description: transcriptional profilling of blood taken at w4.6h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal P390 at w0.w0h [P168_P390_w0.6h]


title: post-vaccination blood sample from animal R761 at w0.w0h [P168_R761_w0.6h]

source_name: Blood sample from animal R761


title: pre-vaccination blood sample from animal R784 at w0.w0h [P168_R784_w0.0h]

source_name: Blood sample from animal R784


title: post-vaccination blood sample from animal P390 at w5.w5h [P168_P390_w5.0h]

description: transcriptional profilling of blood taken at w5.0h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R784 at w12.w12h [P168_R784_w12.0h]


title: post-vaccination blood sample from animal R776 at w0.w0h [P168_R776_w0.6h]


title: post-vaccination blood sample from animal R767 at w12.w12h [P168_R767_w12.0h]


title: pre-vaccination blood sample from animal R768 at w0.w0h [P168_R768_w0.0h]


title: post-vaccination blood sample from animal R768 at w1.w1h [P168_R768_w1.0h]


title: post-vaccination blood sample from animal R760 at w5.w5h [P168_R760_w5.0h]


title: post-vaccination blood sample from animal R783 at w1.w1h [P168_R783_w1.0h]

source_name: Blood sample from animal R783


title: post-vaccination blood sample from animal R783 at w12.w12h [P168_R783_w12.24h]


title: post-vaccination blood sample from animal R768 at w25.w25h [P168_R768_w25.0h]


title: post-vaccination blood sample from animal R784 at w2.w2h [P168_R784_w2.0h]


title: post-vaccination blood sample from animal R781 at w2.w2h [P168_R781_w2.0h]

source_name: Blood sample from animal R781


title: post-vaccination blood sample from animal R761 at w5.w5h [P168_R761_w5.0h]


title: post-vaccination blood sample from animal R768 at w2.w2h [P168_R768_w2.0h]


title: post-vaccination blood sample from animal P409 at w25.w25h [P168_P409_w25.0h]


title: post-vaccination blood sample from animal R776 at w1.w1h [P168_R776_w1.0h]


title: post-vaccination blood sample from animal R791 at w24.w24h [P168_R791_w24.24h]

source_name: Blood sample from animal R791


title: post-vaccination blood sample from animal R791 at w2.w2h [P168_R791_w2.0h]


title: post-vaccination blood sample from animal P409 at w24.w24h [P168_P409_w24.24h]


title: post-vaccination blood sample from animal R761 at w4.w4h [P168_R761_w4.6h]


title: post-vaccination blood sample from animal R761 at w12.w12h [P168_R761_w12.6h]

description: transcriptional profilling of blood taken at w12.6h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R761 at w12.w12h [P168_R761_w12.24h]


title: post-vaccination blood sample from animal R791 at w12.w12h [P168_R791_w12.0h]


title: post-vaccination blood sample from animal R784 at w12.w12h [P168_R784_w12.24h]


title: post-vaccination blood sample from animal R781 at w4.w4h [P168_R781_w4.0h]


title: post-vaccination blood sample from animal R761 at w0.w0h [P168_R761_w0.24h]


title: post-vaccination blood sample from animal R791 at w5.w5h [P168_R791_w5.0h]


title: post-vaccination blood sample from animal P409 at w2.w2h [P168_P409_w2.0h]


title: post-vaccination blood sample from animal P409 at w4.w4h [P168_P409_w4.6h]


title: post-vaccination blood sample from animal R791 at w0.w0h [P168_R791_w0.6h]


title: post-vaccination blood sample from animal R791 at w12.w12h [P168_R791_w12.24h]


title: post-vaccination blood sample from animal P409 at w4.w4h [P168_P409_w4.0h]


title: post-vaccination blood sample from animal R783 at w5.w5h [P168_R783_w5.0h]


title: post-vaccination blood sample from animal R791 at w4.w4h [P168_R791_w4.6h]


title: post-vaccination blood sample from animal R791 at w4.w4h [P168_R791_w4.0h]


title: post-vaccination blood sample from animal R784 at w5.w5h [P168_R784_w5.0h]


title: post-vaccination blood sample from animal R784 at w1.w1h [P168_R784_w1.0h]


title: post-vaccination blood sample from animal P409 at w0.w0h [P168_P409_w0.6h]


title: post-vaccination blood sample from animal P409 at w12.w12h [P168_P409_w12.24h]


title: post-vaccination blood sample from animal R784 at w4.w4h [P168_R784_w4.6h]


title: post-vaccination blood sample from animal R781 at w0.w0h [P168_R781_w0.6h]


title: post-vaccination blood sample from animal R781 at w1.w1h [P168_R781_w1.0h]


title: post-vaccination blood sample from animal P409 at w12.w12h [P168_P409_w12.6h]


title: post-vaccination blood sample from animal R781 at w25.w25h [P168_R781_w25.0h]


title: post-vaccination blood sample from animal R784 at w25.w25h [P168_R784_w25.0h]


title: post-vaccination blood sample from animal R784 at w0.w0h [P168_R784_w0.24h]


title: post-vaccination blood sample from animal R791 at w25.w25h [P168_R791_w25.0h]


title: post-vaccination blood sample from animal P409 at w5.w5h [P168_P409_w5.0h]


title: post-vaccination blood sample from animal R761 at w1.w1h [P168_R761_w1.0h]


title: post-vaccination blood sample from animal R783 at w4.w4h [P168_R783_w4.6h]


title: post-vaccination blood sample from animal R783 at w2.w2h [P168_R783_w2.0h]


title: post-vaccination blood sample from animal R783 at w12.w12h [P168_R783_w12.6h]


title: pre-vaccination blood sample from animal R761 at w0.w0h [P168_R761_w0.0h]


title: post-vaccination blood sample from animal R783 at w0.w0h [P168_R783_w0.24h]


title: pre-vaccination blood sample from animal R783 at w0.w0h [P168_R783_w0.0h]


title: post-vaccination blood sample from animal R781 at w0.w0h [P168_R781_w0.24h]


title: post-vaccination blood sample from animal R791 at w14.w14h [P168_R791_w14.0h]

description: transcriptional profilling of blood taken at w14.0h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R781 at w14.w14h [P168_R781_w14.0h]


title: post-vaccination blood sample from animal R781 at w12.w12h [P168_R781_w12.24h]


title: post-vaccination blood sample from animal R784 at w14.w14h [P168_R784_w14.0h]


title: pre-vaccination blood sample from animal R791 at w0.w0h [P168_R791_w0.0h]


title: post-vaccination blood sample from animal R761 at w4.w4h [P168_R761_w4.0h]


title: post-vaccination blood sample from animal R761 at w12.w12h [P168_R761_w12.0h]


title: post-vaccination blood sample from animal R768 at w14.w14h [P168_R768_w14.0h]


title: post-vaccination blood sample from animal R765 at w14.w14h [P168_R765_w14.0h]


title: post-vaccination blood sample from animal P390 at w14.w14h [P168_P390_w14.0h]


title: post-vaccination blood sample from animal R760 at w14.w14h [P168_R760_w14.0h]


title: post-vaccination blood sample from animal R767 at w14.w14h [P168_R767_w14.0h]


title: post-vaccination blood sample from animal R783 at w14.w14h [P168_R783_w14.0h]


title: pre-vaccination blood sample from animal R772 at w0.w0h [P168_R772_w0.0h]

source_name: Blood sample from animal R772


title: post-vaccination blood sample from animal R783 at w26.w26h [P168_R783_w26.0h]


title: post-vaccination blood sample from animal R776 at w14.w14h [P168_R776_w14.0h]


title: post-vaccination blood sample from animal P397 at w0.w0h [P168_P397_w0.24h]

description: transcriptional profilling of blood taken at w0.24h after vaccination with NYV-SIV

source_name: Blood sample from animal P397


title: post-vaccination blood sample from animal R769 at w26.w26h [P168_R769_w26.0h]

description: transcriptional profilling of blood taken at w26.0h after vaccination with NYV-SIV

source_name: Blood sample from animal R769


title: pre-vaccination blood sample from animal R769 at w0.w0h [P168_R769_w0.0h]


title: post-vaccination blood sample from animal R773 at w4.w4h [P168_R773_w4.6h]

description: transcriptional profilling of blood taken at w4.6h after vaccination with NYV-SIV

source_name: Blood sample from animal R773


title: post-vaccination blood sample from animal R769 at w4.w4h [P168_R769_w4.6h]


title: post-vaccination blood sample from animal P397 at w2.w2h [P168_P397_w2.0h]

description: transcriptional profilling of blood taken at w2.0h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R766 at w1.w1h [P168_R766_w1.0h]

description: transcriptional profilling of blood taken at w1.0h after vaccination with NYV-SIV

source_name: Blood sample from animal R766


title: post-vaccination blood sample from animal R773 at w25.w25h [P168_R773_w25.0h]

description: transcriptional profilling of blood taken at w25.0h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R773 at w2.w2h [P168_R773_w2.0h]


title: post-vaccination blood sample from animal P397 at w12.w12h [P168_P397_w12.6h]

description: transcriptional profilling of blood taken at w12.6h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R769 at w2.w2h [P168_R769_w2.0h]


title: post-vaccination blood sample from animal R773 at w0.w0h [P168_R773_w0.6h]

description: transcriptional profilling of blood taken at w0.6h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R769 at w5.w5h [P168_R769_w5.0h]

description: transcriptional profilling of blood taken at w5.0h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R769 at w4.w4h [P168_R769_w4.0h]

description: transcriptional profilling of blood taken at w4.0h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal P397 at w0.w0h [P168_P397_w0.6h]


title: post-vaccination blood sample from animal P397 at w4.w4h [P168_P397_w4.6h]


title: post-vaccination blood sample from animal R770 at w25.w25h [P168_R770_w25.0h]

source_name: Blood sample from animal R770


title: post-vaccination blood sample from animal R769 at w0.w0h [P168_R769_w0.6h]


title: post-vaccination blood sample from animal R766 at w4.w4h [P168_R766_w4.0h]


title: post-vaccination blood sample from animal R766 at w24.w24h [P168_R766_w24.24h]

description: transcriptional profilling of blood taken at w24.24h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R770 at w1.w1h [P168_R770_w1.0h]


title: post-vaccination blood sample from animal P397 at w12.w12h [P168_P397_w12.0h]

description: transcriptional profilling of blood taken at w12.0h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R766 at w2.w2h [P168_R766_w2.0h]


title: post-vaccination blood sample from animal R770 at w0.w0h [P168_R770_w0.6h]


title: post-vaccination blood sample from animal R766 at w12.w12h [P168_R766_w12.0h]


title: pre-vaccination blood sample from animal R765 at w0.w0h [P168_R765_w0.0h]

description: transcriptional profilling of blood taken pre-vaccination


title: pre-vaccination blood sample from animal R770 at w0.w0h [P168_R770_w0.0h]


title: post-vaccination blood sample from animal R772 at w0.w0h [P168_R772_w0.6h]


title: post-vaccination blood sample from animal R773 at w12.w12h [P168_R773_w12.0h]


title: post-vaccination blood sample from animal R766 at w5.w5h [P168_R766_w5.0h]


title: post-vaccination blood sample from animal R773 at w12.w12h [P168_R773_w12.24h]

description: transcriptional profilling of blood taken at w12.24h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R772 at w24.w24h [P168_R772_w24.24h]


title: post-vaccination blood sample from animal R770 at w12.w12h [P168_R770_w12.0h]


title: post-vaccination blood sample from animal R773 at w12.w12h [P168_R773_w12.6h]


title: post-vaccination blood sample from animal R770 at w26.w26h [P168_R770_w26.0h]


title: post-vaccination blood sample from animal R769 at w12.w12h [P168_R769_w12.0h]


title: post-vaccination blood sample from animal P397 at w24.w24h [P168_P397_w24.24h]


title: post-vaccination blood sample from animal P397 at w1.w1h [P168_P397_w1.0h]


title: post-vaccination blood sample from animal P397 at w4.w4h [P168_P397_w4.0h]


title: post-vaccination blood sample from animal R781 at w5.w5h [P168_R781_w5.0h]

description: transcriptional profilling of blood taken at w5.0h after vaccination with ALV-SIV


title: post-vaccination blood sample from animal R764 at w0.w0h [P168_R764_w0.24h]

description: transcriptional profilling of blood taken at w0.24h after vaccination with ALV-Control

source_name: Blood sample from animal R764


title: post-vaccination blood sample from animal P403 at w4.w4h [P168_P403_w4.0h]

description: transcriptional profilling of blood taken at w4.0h after vaccination with ALV-Control

source_name: Blood sample from animal P403


title: post-vaccination blood sample from animal P403 at w1.w1h [P168_P403_w1.0h]

description: transcriptional profilling of blood taken at w1.0h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R770 at w0.w0h [P168_R770_w0.24h]

description: transcriptional profilling of blood taken at w0.24h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R817 at w4.w4h [P168_R817_w4.6h]

description: transcriptional profilling of blood taken at w4.6h after vaccination with ALV-Control

source_name: Blood sample from animal R817


title: post-vaccination blood sample from animal R769 at w24.w24h [P168_R769_w24.24h]


title: post-vaccination blood sample from animal R771 at w4.w4h [P168_R771_w4.0h]

source_name: Blood sample from animal R771


title: post-vaccination blood sample from animal R773 at w5.w5h [P168_R773_w5.0h]


title: post-vaccination blood sample from animal R774 at w2.w2h [P168_R774_w2.0h]

description: transcriptional profilling of blood taken at w2.0h after vaccination with ALV-Control

source_name: Blood sample from animal R774


title: post-vaccination blood sample from animal R764 at w2.w2h [P168_R764_w2.0h]


title: post-vaccination blood sample from animal R774 at w5.w5h [P168_R774_w5.0h]

description: transcriptional profilling of blood taken at w5.0h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R769 at w25.w25h [P168_R769_w25.0h]

description: transcriptional profilling of blood taken at w25.0h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R794 at w2.w2h [P168_R794_w2.0h]

source_name: Blood sample from animal R794


title: post-vaccination blood sample from animal R817 at w25.w25h [P168_R817_w25.0h]

description: transcriptional profilling of blood taken at w25.0h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R774 at w12.w12h [P168_R774_w12.0h]

description: transcriptional profilling of blood taken at w12.0h after vaccination with ALV-Control


title: post-vaccination blood sample from animal R764 at w12.w12h [P168_R764_w12.0h]


title: post-vaccination blood sample from animal R772 at w4.w4h [P168_R772_w4.6h]

description: transcriptional profilling of blood taken at w4.6h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R772 at w12.w12h [P168_R772_w12.0h]


title: post-vaccination blood sample from animal R770 at w24.w24h [P168_R770_w24.24h]


title: post-vaccination blood sample from animal R771 at w1.w1h [P168_R771_w1.0h]


title: post-vaccination blood sample from animal R766 at w25.w25h [P168_R766_w25.0h]


title: post-vaccination blood sample from animal R772 at w12.w12h [P168_R772_w12.24h]


title: post-vaccination blood sample from animal R766 at w26.w26h [P168_R766_w26.0h]

description: transcriptional profilling of blood taken at w26.0h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R769 at w1.w1h [P168_R769_w1.0h]

description: transcriptional profilling of blood taken at w1.0h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal R772 at w12.w12h [P168_R772_w12.6h]

description: transcriptional profilling of blood taken at w12.6h after vaccination with NYV-SIV


title: post-vaccination blood sample from animal P397 at w26.w26h [P168_P397_w26.0h]


title: post-vaccination blood sample from animal R774 at w12.w12h [P168_R774_w12.6h]

description: transcriptional profilling of blood taken at w12.6h after vaccination with ALV-Control