title: 13499X13

data_processing:
Analysis Description  1. Read were aligned to dm3 + splices using novoalign allowing up to 50 alignments per read. (Alignments/Processed)  2. USeq 8.8.9 SamTranscriptomeParser was used to select the best alignment for each read, remove repetitive or low quality reads and convert spliced alignment coordinates to genomic space (Alignments/raw)  3. USeq DefinedRegionDifferentialSeq was used to generate per gene read counts.  4. Gene counts were used in DESeq2 to determine differential experssion  Notes  1. Alignment rate was fantastic, >90% of reads aligned uniquely, >95% of these fell within known genes.  2. Samples clustered by treatment
Genome_build: dm3
Supplementary_files_format_and_content: excel file, per gene read counts

source_name: Control

growth_protocol: All flies maintained on regular diet after eclosion and collected at day 6 of adulthood for RNA preparation

extract_protocol:
Total RNA, Tripure extraction followed by column/DNase
Illumina TruSeq Stranded mRNA Library Preparation Kit with poly(A) selection. Intact poly(A) RNA was purified from total RNA samples (100-500 ng) with oligo(dT) magnetic beads and stranded mRNA sequencing libraries were prepared as described using the Illumina TruSeq Stranded mRNA Library Preparation Kit (RS-122-2101, RS-122-2102).  Purified libraries were qualified on an Agilent Technologies 2200 TapeStation using a D1000 ScreenTape assay (cat# 5067-5582 and 5067-5583).  The molarity of adapter-modified molecules was defined by quantitative PCR using the Kapa Biosystems Kapa Library Quant Kit (cat#KK4824).  Individual libraries were normalized to 5 nM and equal volumes were pooled in preparation for Illumina sequence analysis.           Additional details of the library preparation process are described below:  Library construction is performed using the Illumina TruSeq Stranded mRNA Library Preparation Kit (cat# RS-122-2101, RS-122-2102) as described below.  Briefly, total RNA (100 ng to 4 ug) is poly-A selected using poly-T  oligo-attached magnetic beads.  Poly-A RNA eluted from the magnetic beads is fragmented and primed with random hexamers in preparation for cDNA synthesis.  First strand reverse transcription is accomplished using Superscript II Reverse Transcriptase (Invitrogen cat#18064-014).  Second strand cDNA synthesis is accomplished using DNA polymerase I and Rnase H under conditions in which dUTP is substituted for dTTP, yielding blunt-ended cDNA fragments in which the second strand with dUTP.  An A-base is added to the blunt ends as a means to prepare the cDNA fragments for adapter ligation and block concatamer formation during the ligation step.  Adapters containing a T-base overhang  are ligated to the A-tailed DNA fragments.  Ligated fragments are PCR-amplified (12-15 cycles) under conditions in which the pcr reaction enables amplification of the first strand cDNA product, whereas attempted amplifciation of the second strand product stalls at dUTP bases and therefore is not represented in the amplified library.  The PCR-amplified library is purified using Agencourt AMPure XP beads (Beckman Coulter Genomics cat#A63881).  Following amplification, the library is purified by bead based methodologies.  The concentration of the amplified library is measured with a NanoDrop spectrophotometer and an aliquot of the library is resolved on an Agilent 2200 Tape Station using a D1K (cat# 5067-5361 and 5067-5362) or a High Sensitivity D1K (cat# 5067-5363 and 5067-5364) assay to define the size distribution of the sequencing library.  Libraries are adjusted to a concentration of approximately 10 nM and quantitative PCR is performed using the KapaBiosystems Kapa Library Quant Kit (cat# KK4824) to calculate the molarity of adapter ligated library molecules.  The concentration is further adjusted following qPCR to prepare the library for Illumina sequence analysis.

treatment_protocol: Experimental flies were subjected to heat-treatment to induce hsFLP expression, controls were not heat treated

value: yw, hsFLP;; dERR[conditional] / dERR2

value: no heat treatment controls


title: w1118 FLAG IP control 2

status: Public on Mar 01 2020

type: SRA

city: Salt Lake City

first: Katherine

last: Beebe

state: UT

address: 15 North 2030 East

department: Molecular Medicine

country: USA

institute: University of Utah

library_source: genomic

data_processing: wig files

molecule: genomic DNA

organism: Drosophila melanogaster

source_name: whole fly

extract_protocol:
ChIP-seq was performed on six-day-old w1118 controls and w1118; dERR-3XFLAG-BACVK22; dERR1/dERR2 adults essentially as described (Barry and Thummel 2016) using FLAG antibodies (Sigma F1804, M2 monoclonal).
ChIP-seq library construction is performed using the Illumina TruSeq ChIP Sample Prep Kit (IP-202-1012 and IP-202-1024) as described below.  Briefly, ChIP DNA is quantitated using an Invitrogen Qubit dsDNA HS Assay (Q32851) and a quantity representing appoximately 10 ng is converted to blunt-ended fragments with 5'-phosphates and 3'-hydroxyl groups using a combination of enzymes that perform fill-in reactions and exhibit exonuclease activity.  An A-base is added to the blunt-ended DNA as a means to prepare the fragments for adapter ligation and to block concatamer formation during the ligation step.  Adapters containing a T-base overhang are ligated to the A-tailed DNA fragments.  Ligated fragments are PCR-amplified (10 cycles) and the amplified library is purified  using Agencourt AMPure XP beads.  The concentration of the amplified library is measured using the Invitrogen Qubit dsDNA HS Assay and an aliquot of the library is resolved on an Agilent 2200 Tape Station using a D1K (cat# 5067-5361 and 5067-5362) or a High Sensitivity D1K (cat# 5067-5363 and 5067-5364) assay to define the size distribution of the sequencing library.  Libraries are adjusted to a concentration of approximately 10 nM and quantitative PCR is performed using the KapaBiosystems Kapa Library Quant Kit (cat# KK4824) to calculate the molarity of adapter ligated library molecules.  The concentration is further adjusted following qPCR to prepare the library for Illumina sequence analysis.

tag: tissue

value: whole fly

tag: full genotype

tag: Sex

value: male

tag: age

value: day 6 adults


title: 13499X15

library_source: transcriptomic

molecule: total RNA

tag: treatment


title: Apoe-/-/Treml4-/- macrophages untreated rep 3

city: Frederick

first: Marieli

last: Gonzalez-Cotto

state: Maryland

department: Cancer & Inflammation Program

institute: National Cancer Institute

data_processing:
BAM files were converted to fastq, followed by Fast QC
Align fastq files to Genecode mouse reference using STAR (with soft trimming)
Post-alignment quality control with RNASeqQC
Subreads counting on aligned BAM files (using RefSeq gtf file)
Genome_build: mm10
Supplementary_files_format_and_content: rpkm

organism: Mus musculus

source_name: macrophage untreated

growth_protocol: Total cells from the bone marrow were plated at 7.0 x 10^5 / mL for 5-7 days in complete Dulbecco’s modified eagles media (DMEM) (Gibco #11965) supplemented with 2mM Glutamine, 10% FBS, 100U/mL Penicillin/Streptomicin and 20ng/ml mouse M-CSF allowing for proper BMDM differentiation and growth.

extract_protocol:
Total RNA was isolated using the High-Pure Rna isolation kit (Roche, 11828665001), as per manufacturer's instructions (with the addition that 2-mercaptoethanol (1%v/v) was added to the lysis buffer. RNA quality was checked on Agilent Bioanalyzer.  All samples used have high quality score.
Samples sequence on one Novaseq SP 150bpX2 FC + one Miseq 50bp SR run for barcode normalize
Illumina HiSeq4000, stranded, paired-end, barcoded, read length: 50 bp, reads per sample: 60x10^6

treatment_protocol: After growing BMDM for 6 days in culture, cells were placed in complete culture media and treated with vehicle (PBS) or of LPS (100ng/mL) for  8h or 12h  for proinflammatory activation

tag: genotype

value: Apoe/Treml4 DKO

tag: cell type

value: bone marrow derived macrophages

tag: background strain


title: 70815S_OncoScan

type: genomic

city: East Melbourne

first: Kylie

middle: L

last: Gorringe

state: Victoria

address: St Andrew's Pl

department: Research Division

country: Australia

institute: Peter MacCallum Cancer Centre

description: Sample name: 0004624_D09

hyb_protocol: DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.

scan_protocol: The Arrays were then washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000.

data_processing:
CHP files were generated using the Affymetrix Genotyping Console algorithm Birdseed v2. Total and allele-specific copy number analysis was performed using Partek Genomics Suite 6.5, using both paired copy number generation.
OncoScan MIP arrays were analyzed using Nexus
CEL and CHP files are provided for each sample in the study (Affymetrix SNP 6); normalized data is provided for OncoScan MIP arrays (Each sample has 5 columns: Copy A, Copy B, Copy number, Allele ratio and Allelic difference).

label: Biotin

organism: Homo sapiens

source_name: Ovarian serous cystadenofibroma

label_protocol: As per manufacturer's recommendations (Affymetrix)

extract_protocol: Genomic DNA was extracted from tissues (epithelium and stroma) microdissected mucinous ovarian tumors stained with haematoxylin and eosin, and from lymphcoytes obtained from peripheral blood (for matched normal DNA)  using the Qiagen DNA Blood Mini Kit. DNA quality and quantity was assessed using a Nanodrop Spectrophotometer and Qubit.

value: tumor stroma

tag: tumor histology

value: Serous cystadenofibroma

tag: diagnosis

value: Benign serous cystadenofibroma


title: 13499X14


title: 13499X12

source_name: dERR-/-

value: 1-hour heat-treatment on days 5 and 6 AEL to induce hsFLP expression


title: Apoe-/-/Treml4-/- macrophages untreated rep 1


title: IC5G_OncoScan

description: Sample name: 0004625_C11

source_name: Lymphocyte DNA

value: Peripheral Blood Lymphocytes


title: 51807S_OncoScan

description: Sample name: 0004624_D05


title: 13499X11


title: IC5S_OncoScan

description: Sample name: 0004625_C10


title: KO tumor_2

city: Epalinges

first: Ping-Chih

last: Ho

state: Vaud

address: Ch. des Boveresses 155

department: Department of Fundamental Oncology

country: Switzerland

institute: University of Lausanne

description: FoxP3+ Treg

data_processing:
Illumina Casava1.8.2 software used for basecalling.Base calls were subsequently converted into multiplexed, unaligned BAM format before demultiplexing into sample-specific, unaligned BAM files.
NGS reads were trimmed based on quality and adapter sequence content with Trimmomatic in single-end (ILLUMINACLIP:TruSeq3-SE.fa:2:30:10:1:true, SLIDINGWINDOW:4:15, MINLEN:20)
NGS reads passing vendor quality filtering were aligned to the UCSC Genome Browser [mm10] flavour of the Genome Reference Consortium [GRCm38] assembly with TopHat2 (v2.1.1), a splice junction mapper utilising the Bowtie2 (v2.2.9) short read aligner
Before differential expression calling with Cuffdiff (included in Cufflinks v2.2.1), transcriptome sets of each sample of each group were combined via the Cuffmerge algorithm
The Bioconductor DESeq2 package was then used to model the expression data set and call differentially expressed genes.
Genome_build: Mus musculus genome assembly GRCm38/mm10
Supplementary_files_format_and_content: tab-delimited text files include FPKM counts for each Sample

source_name: Yumm1.7 Melanoma-infiltrated CD36-deficient Treg

extract_protocol:
Total RNA was extracted using the protocol for low input RNA sequencing provided by Research Center for Molecular Medicine  of the Austrian Academy of Sciences
RNA libraries were prepared for sequencing using Smart-Seq2 Illumina protocol

tag: strain

value: CD36floxed FoxP3-YFPCre+/-

value: 8 weeks

value: CD36 KO (Foxp3-YFP+)

value: melanoma

value: tumor infiltrated Treg


title: 13499X10

value: yw, hsFLP;; dERR[conditional] / dERR2


title: IC467S_OncoScan

description: Sample name: 0004625_D02


title: 70042G_OncoScan

description: Sample name: 0004625_C02


title: 70050S_OncoScan

description: Sample name: 0004625_A08


title: KO tumor_1

description: FoxP3+ Treg


title: LN_3

description: FoxP3+ Treg

source_name: Lymph node Treg

value: WT (Foxp3-YFP+)

value: lymph node

value: Treg


title: WT Tumor_2

description: FoxP3+ Treg

source_name: Yumm1.7 Melanoma-infiltrated Treg


title: LN_2

description: FoxP3+ Treg


title: KO tumor_3

description: FoxP3+ Treg


title: 70827G_OncoScan

description: Sample name: 0004624_D01

value: Serous cystadenoma

value: Benign serous cystadenoma


title: WT Tumor_4

description: FoxP3+ Treg


title: 70042S_OncoScan

description: Sample name: 0004625_C01


title: IC467G_OncoScan

description: Sample name: 0004625_D03


title: WT Tumor_3

description: FoxP3+ Treg


title: 70050G_OncoScan

description: Sample name: 0004625_A09


title: Spleen_2

description: FoxP3+ Treg

source_name: Spleen Treg

value: spleen


title: Control LPS stimulation

type: RNA

city: Kamakura

first: Satoshi

last: Kondo

state: Kanagawa

address: 10-1 tebiro 6-chome

country: Japan

institute: Toray Industries,Inc.

description: RNA was extracted from LPS-stimulated THP-1 cells cultured in exosome free medium, and was subjected to the microarray analysis.

hyb_protocol: Hybridized for 16 h at 37 C with rotary shake (250 rpm). Hybridization buffer and washing protocol was followed by the protocol supplied by TORAY Industries, Inc..

scan_protocol: 3D-Gene Scanner ((Toray Industries Inc., Tokyo, Japan) was used for scanning. Images were quantified using Extraction(Toray Industries Inc., Tokyo, Japan).

data_processing: The raw data of each spot was normalized by substitution with a mean intensity of the background signal determined by all blank spots’ signal intensities of 95% confidence intervals.

source_name: Human immortalized cells

label_protocol: cDNA and Amino Allyl aRNA was synthesis by Amino Allyl MessageAmp II aRNA Amplification Kit (Ambion#1753). CyeDye Coupling and fragmentation were performed as the protocol supplied by TORAY Industries, Inc..

growth_protocol: THP-1 monocytes and THP-1 macrophages were cultured in RPMI-1640 with exosome free FCS media (5%). THP-1 monocytes were seeded onto 24-well plate and differentiated into macrophages with PMA (60ng/ml) for 16 hours.

extract_protocol: Total RNA from cultured cells was extracted using TRIZOL (Invitrogen), according to the manufacturer´s instruction.

treatment_protocol: EVs were isolated with Total Exosome Isolation reagent (from serum)(Thermo Fisher Scientific), according to manufacturer´s intructions. To transfer EVs to cells, collected EVs from serum (100μL) were susupended with PBS (50μL) and incorporated to each well. As control PBS (50μL) was added to each well. Treated cells were cultured for 48 hours, stimulated with LPS (0.1mg/ml) and collected 2 hours later.

tag: cell line

value: LPS stimulation


title: LN_4

description: FoxP3+ Treg


title: LN_1

description: FoxP3+ Treg


title: fetal_before_4_H12

city: Uppsala

first: Asa

middle: Kristina

last: Bjorklund

address: Box 596

department: Cell and Molecular Biology

country: Sweden

institute: Uppsala University

data_processing:
All reads were aligned to the human (hg19) genome using STAR v2.3.0e (Dobin et al. 2013)
Non-uniquely mapped reads were removed using Samtools
Rpkmforgenes (available at http://sandberg.cmb.ki.se/rnaseq/), options -readcount -fulltranscript -mRNAnorm -rmnameoverlap -u, was used to generate RPKM values and read counts. We used a file with unique positions from Storvall et al. 2013 PLOS ONE. Gene annotations used were transcripts in Ensembl ( June 2015)
Genome_build: hg19
Supplementary_files_format_and_content: Gene expression values are provided as rpkms and counts (comma separated text files)

molecule: polyA RNA

source_name: Cell culture

growth_protocol: Ventral midbrain human embryonic stem cells have been generated following the Nature protocols: Nolbrant et al 2017.

extract_protocol:
Single cells have been extracted from tissue using Papain Dissociation System (Worthington). cDNA was generated from FACS sorted single cells (ventral midbrain human embryonic stem cells before grafting, fetal cells before and after grafting were sorted for size, ventral midbrain human embryonic stem cells after grafting were sorted for GFP expression) using Smart-seq2 protocol (Picelli et al. Nature Methods 2013).  ERCC spike-in RNA was added to the lysis buffer.
Nextera XT DNA sample preparation index kit, 96 indices (Illumina)

value: Fetal

tag: sortingmethod

value: size

tag: plate


title: fetal_before_4_G8


title: Donor A15136 Treatment Cephalexin Day -42

city: Cleveland

first: Mark

last: Cameron

state: OH

address: 10900 Euclid Ave

department: Population and Quantitative Health Sciences

institute: Case Western Reserve University

description:
rawCounts.csv
normalizedCounts.csv
S36

data_processing:
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence using skewer v0.2.2, then mapped to Mmul_8.0.1 whole genome using Hisat2 v2.0.5
Read summarization was performed by the program featureCounts v1.5.0-p2 as part of the SubRead package using the NCBI Homo sapiens Annotation release 106.
Counts Per Million (CPM) values were generated through the edgeR Library v3.16.5 in R
Genome_build: Mmul_8.0.1
Supplementary_files_format_and_content: rawCounts.csv: counts as generated by featureCounts, rows are gene features, columns are samples
normalizedCounts.csv: remove counts that were all zeroes (across the full set); Perform TMM normalization ; export log2(n+0.25) CPM

organism: Macaca mulatta

source_name: Colon biopsy tissue

growth_protocol: in vivo

extract_protocol:
RNA was extracted from colon biopsies preserved in RNA-Later using RNeasy Micro from Qiagen.
RNA libraries were prepared for sequencing using the Illumina TruSeq Stranded Total RNA - Globin kit.

treatment_protocol: no treament

value: Cephalexin

value: female

tag: timepoint

value: -42 days

value: Colon biopsy tissue


title: Sorted population 1 and 2 of khES2-EB

address: Tebiro 6-10-1

department: New Projects Development Division

description: The embryoid bodies (EBs) were formed by floating the culture in ultra-low attachment culture dishes (Corning, Inc., NY, USA) in RPMI-1640:MEMα = 1:1 mixed medium containing 5% fetal bovine serum (Biowest, Nuaillé, France) and 0.5 mM ascorbic acid (Sigma-Aldrich) for two months. Single cell dissociated cells were sorted regardig TMRM-live mitochondria stain and immunocytochemical ALCAM staining. Population-2(P2) was TMRM-hi and ALCAM-hi population

data_processing: F635 Median column as Red signal and F532 Median column as Green signal. Global normalized, background subtracted data obtained from log2 of processed Green signal/processed Red signal.

growth_protocol: To initiate differentiation, semi-confluent human ESCs were washed thrice and cultured for 1 week with RPMI-1640 medium (Wako). Cell clumps differentiated from human ESCs were collected via 0.1% collagenase (Wako) treatment, and their embryoid bodies (EBs) were formed by floating the culture in ultra-low attachment culture dishes (Corning, Inc., NY, USA) in RPMI-1640:MEMα = 1:1 mixed medium containing 5% fetal bovine serum (Biowest, Nuaillé, France) and 0.5 mM ascorbic acid (Sigma-Aldrich). To obtain mature hepatocyte-like cells, the cells were cultured for approximately 2 months while exchanging the medium every week.

extract_protocol: Total RNA was extracted from the cells using ISOGEN (Nippon Gene, Toyama, Japan), according to the manufacturer’s instructions.

treatment_protocol: human ESC-derived EBs were dispersed in single cells as described previously16. Shortly, isolated whole viscera was treated with 0.1% collagenase (Wako), 0.083% trypsin (Difco, Detroit, MI, USA), 20 μg ml−1 DNase I (Sigma) in Ads buffer (116 mM NaCl, 20 mM HEPES, 12.5 mM NaH2PO4, 5.6 mM glucose, 5.4 mM KCl, and 0.8 mM MgSO4; pH 7.35) by stirring at 37°C for 1-5 h. Dispersed cells were applied to FACS experiments. All single cells were stained for mitochondria with 100 nM TMRM (tetramethylrhodamine, methyl ester; Invitrogen) in hepatic maturation medium for 30 min at 37°C. Next, the cells were stained with an anti-ALCAM antibody (1:50, R&D Systems, Minneapolis, MN, USA) for 50 min, and subsequently Alexa Fluor 488 donkey anti-goat IgG (1:100, Invitrogen) for 30 min. These processes were performed on ice using cooled Ads buffer containing 2% fetal bovine serum for washing and diluting the antibodies. The stained cells were analyzed and sorted by FACS Aria™ III (BD Biosciences, Franklin Lakes, NJ, USA) using an 85 or 100 μm nodule. As the common gating strategy to eliminate doublets, the major FSC-A and SSC-A population was gated by FSC-H and –W, followed by gating by SSC-H and –W. For data acquisition and sorting, these single cell-containing droplets were separated by AlexaFlou488 (FITC-channel) and PE-channel. Flow-rate was optimized for higher sorting efficiency (approximately >90%).

value: TMRM-hi and ALCAM-low

value: TMRM-hi and ALCAM-hi


title: Spleen_4

description: FoxP3+ Treg

value: 8 weeks


title: KO-untreated-3

status: Public on Mar 02 2020

city: Wuhan

first: Chenhui

last: Wang

state: Hubei

address: 1037 Luoyu Rd

country: China

institute: Huazhong University of Science and Technology

description: RNA sequencing

data_processing:
Illumina Casava1.7 software used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to mm10 whole genome using bowtie v0.12.2 with parameters -q -p 4 -e 100 -y -a -m 10 --best --strata
RSEM software was used to calculate gene expression level (FPKM).
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each Sample. Gene IDs are NCBI Gene IDs.

source_name: Bone marrow derived macrophages (BMDMs)

growth_protocol: BMDMs were obtained by differentiating bone marrow progenitors from the tibia and femur of 6–8-week-old male or female mice in Iscove’s Modified Dulbecco’s Media (IMDM) containing 20 ng/ml of M-CSF (Peprotech), 10% heat-inactivated fetal bovine serum (FBS, Invitrogen), 1 mM sodium pyruvate, 100 U/ml penicillin, and 100 μg/ml streptomycin (Invitrogen) for 5-7 days.

extract_protocol:
BMDMs were harvested after treatment, and RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit (Cat#FC-122-1001) was used with 1 ug of total RNA for the construction of sequencing libraries.
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: WT or TAGAP-KO BMDMs were left untreated or treated with Curdlan (10ug/ml) for 3 hours.

value: Bone marrow derived macrophages (BMDMs)

value: TAGAP-KO

value: untreated


title: fetal_before_4_G7


title: Spleen_3

description: FoxP3+ Treg

value: WT (Foxp3-YFP+)

value: Treg


title: Spleen_1

description: FoxP3+ Treg


title: WT_pp_LSK_P5_1443

city: Freiburg im Breisgau

first: Josip

middle: Stefan

last: Herman

address: Stuebeweg 51

department: Quantitative Single Cell Biology

country: Germany

institute: Max Planck Institute of Immunobiology and Epigenetics

description:
WT_3
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI8
Barcode sequence: ACTTGA

data_processing:
For image acquisition, intensity extraction and basecalling HiSeq Control Software 2.0.2, RTA 2.4.11 / Recipe Fragment 2.0.0.2 was used. Conversion of bcl2fastq files was performed using bcl2fastq 2.17.1.14.
Paired end reads were aligned to the transcriptome using bwa (version 0.6.2-r126) with default parameters. The transcriptome contained all RefSeq gene models based on the mouse genome release mm10 downloaded from the UCSC genome browser. All isoforms of the same gene were merged to a single gene locus.
The right read (R2) of each read pair was mapped to the ensemble of all gene loci and to the set of 92 ERCC spike-ins in sense direction (Baker et al., 2005). Reads mapping to multiple loci were discarded.
The left read (R1) contains the barcode information: the first six bases corresponded to the cell specific barcode followed by six bases representing the unique molecular identifier (UMI). The remainder of the left read contains a polyT stretch. The left read was not used for quantification.
For each cell barcode, the number of UMIs per transcript were counted and aggregated across all transcripts derived from the same gene locus.
Based on binomial statistics, the number of observed UMIs were converted into transcript counts (Grün et al., 2014).
Genome_build: mm10 (GRCm38)
Supplementary_files_format_and_content: Tab-delimited text files, columns represent each cell barcode (total barcodes used = 192), rows represent the geneid and the values in the file are the quantified number of transcripts.

source_name: Bone marrow hematopoietic progenitors

growth_protocol: Hematopoietic stroma cells and hematopoietic progenitors were isolated from Ebf1+/+ Prx1-Cre and Ebf1 fl/fl Prx1-Cre.

extract_protocol:
Intact bones (femora and tibia) were chopped into small fragments and crushed in FACS buffer (PBS-2% FCS) using pestle and mortar. Bone marrow cells were collected and RBC lysis was performed. Next, the cells were washed with FACS buffer and stained for analysis. For sorting of HSPCs the cells were enriched by magnetic depletion. Briefly, the BM cells were labeled with a cocktail of biotinylated antibodies (CD3, CD19, B220, CD11b, Gr1 and Ter119) and then with streptavidin-conjugated magnetic nanobeads (BioLegend). The Lineage- cells obtained were stained with following antibodies: anti-lineage (CD3, CD19, B220, CD11b, Gr1 and Ter119), anti-Sca1, anti-c-kit, anti-CD135, anti-CD48, anti-150, and then further purified by FACS sorting. The immunophenotypes of assayed hematopoietic cells were as follow: LSKs (Lin-Sca1+c-kit+), HSCs (CD135-CD48-CD150+LSK), MMP3 (CD135-CD48+CD150-LSK), MPP4 (CD135+ CD150-LSK), CLPs (Lin-Sca1loc-kitloIL-7Rα+CD135+), pro-B cells (B220+CD43+), pre-B cells (B220loCD43-), rec-B cells (B220hiCD43-), B cells (B220+CD19+), T cells (CD3+), myeloid cells (Mac1+Gr1+) and erythroid cells (Ter119+). For non-hematopoietic BM cell isolation, the bone chips were digested with 0.3% collagenase type II and 0.02% DNase I at 37°C for 45 min with gentle shaking. After enzymatic digestion, the cells were filtered, washed with FACS buffer, and stained accordingly. CAR cells were identified as CD45-CD31-Lin-PDGFRα+Sca1-, PαS cells were identified as CD45-CD31-Lin-PDGFRα+ Sca1+.
The aRNA was reversely transcribed in order to generate libraries for sequencing, as previously described. 1 µl of custom random hexamer RT primers (GCCTTGGCACCCGAGAATTCCANNNNNN) and 0.5 µl of 10mM dNTP were added to the aRNA. The samples were incubated at 65˚C for 5 min and cooled to 4˚C afterwards. Thereafter 4 µl of First Strand Reaction Mix containing SuperScript™ II Reverse Transcriptase and Buffer (Invitrogen, 18064014) and RnaseOUT™ (Invitrogen, 10777019) was added and samples were first incubated at 25˚C for 10 min followed by incubation at 42˚C for 1 hour. To every sample 2 µl of one uniquely indexed RPI index primer and 2 µl of RP1 primer (TruSeq Library Prep, sequences available from Illumina), 25 µl of Phusion® High-Fidelity PCR Master Mix with HF Buffer (NEB, M0531) and 11 µl of nuclease-free water were added. PCR was performed using 98˚C for 30 s as initial step, followed by 11 cycles of amplification (98˚C for 10 s, 60˚C for 30 s, 72˚C for 30 s) and a final extension at 72˚C for 10 min. To each sample 1 volume (50 µl) of Agencourt® AMPure XP beads (Beckman Coulter, A63881) was added and the samples were incubated at 25˚C for 15 min. The samples were incubated for 5 min on a magnetic stand (96 well format), the supernatant was removed and the beads were washed twice by adding 180 µl of 80 % ethanol and by incubating for 40 s. Ethanol was removed and beads were dried for 10 min at room temperature. DNA was eluted with 25 µl nuclease-free water and the purification was repeated with an adjusted volume of magnetic beads (25 µl). After the final step the samples were eluted in 10 µl nuclease-free water. DNA concentration and fragment size were determined using the Qubit® dsDNA HS Assay Kit (Invitrogen, Q32854) and the Agilent High Sensitivity DNA Kit for Bioanalyzer (Agilent Technologies, 5067-4627), respectively. Libraries were sequenced on an Illumina HiSeq 2500 System in high output run mode at a depth of 150000 to 200000 reads per cell.

treatment_protocol: No treatment.

tag: strain/background

value: bone marrow

tag: genotype/variation

value: Ebf1+/+ Prx1-Cre

value: bone marrow hematopoieitic progenitors


title: fetal_before_4_G5

value: Fetal


title: WT_pp_LSK_P5_1434

description:
WT_2
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI7
Barcode sequence: CAGATC

tag: tissue


title: fetal_before_4_G4

value: size


title: EVs LPS stimulation

description: RNA was extracted from LPS-stimulated THP-1 cells cultured in exosome free medium supplemented with collected EVs, and was subjected to the microarray analysis.

value: EVs amd stimulated with LPS


title: fetal_before_4_H10


title: WT_pp_LSK_P5_1476

description:
WT_5
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI9
Barcode sequence: GATCAG


title: WT_pp_LSK_P5_1471-1

description:
WT_4
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI10
Barcode sequence: TAGCTT


title: WT_pp_LSK_P5_1471-2

description:
WT_4
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI11
Barcode sequence: GGCTAC


title: fetal_before_4_G3


title: fetal_before_4_G6


title: fetal_before_4_H2


title: WT_pp_LSK_P5_1423-2

description:
WT_1
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI9
Barcode sequence: GATCAG


title: WT_pp_HSC_P7_1476

description:
WT_5
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI3
Barcode sequence: TTAGGC


title: fetal_before_4_G12


title: fetal_before_4_G2


title: fetal_before_4_G10


title: 70827S_OncoScan

description: Sample name: 0004624_C11

source_name: Ovarian serous cystadenoma

value: tumor stroma

value: Serous cystadenoma

value: Benign serous cystadenoma


title: WT_pp_HSC_P7_1471-2

description:
WT_4
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI4
Barcode sequence: TGACCA


title: WT_pp_HSC_P7_1423-2

description:
WT_1
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI2
Barcode sequence: CGATGT


title: WT_pp_HSC_P7_1471-1

description:
WT_4
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI3
Barcode sequence: TTAGGC


title: WT_pp_HSC_P7_1434

description:
WT_2
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI1
Barcode sequence: ATCACG


title: WT_pp_HSC_P7_1443

description:
WT_3
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI2
Barcode sequence: CGATGT


title: fetal_before_4_F6


title: Control no stimulation

description: RNA was extracted from THP-1 cells cultured in exosome free medium, and subjected to the microarray analysis.


title: EVs no stimulation

description: RNA was extracted from THP-1 cells cultured in exosome free medium supplemented with collected EVs, and was subjected to the microarray analysis.

value: EV


title: fetal_before_4_G1


title: fetal_before_4_F11


title: fetal_before_4_F12


title: fetal_before_4_F3


title: fetal_before_4_E6


title: fetal_before_4_F5


title: WT_pp_LSK_P5_1423-1

description:
WT_1
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI8
Barcode sequence: ACTTGA


title: WT_pp_HSC_P7_1423-1

description:
WT_1
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI1
Barcode sequence: ATCACG


title: KO_cre_LSK_P5_1474

description:
KO_6
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI12
Barcode sequence: CTTGTA

value: Ebf1 fl/fl Prx1-Cre


title: fetal_before_4_E5


title: KO_cre_LSK_P5_1469

description:
KO_4
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI16
Barcode sequence: CCGTCC


title: KO_cre_LSK_P5_1463

description:
KO_3
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI11
Barcode sequence: GGCTAC


title: fetal_before_4_F1


title: KO_cre_LSK_P5_1444

description:
KO_2
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI10
Barcode sequence: TAGCTT


title: KO_cre_LSK_P5_1470

description:
KO_5
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI17
Barcode sequence: GTAGAG


title: KO_cre_LSK_P5_1424

description:
KO_1
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI12
Barcode sequence: CTTGTA


title: KO_cre_HSC_P7_1474

description:
KO_6
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI6
Barcode sequence: GCCAAT


title: fetal_before_4_E3


title: fetal_before_4_E4


title: KO_cre_HSC_P7_1470

description:
KO_5
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI7
Barcode sequence: CAGATC


title: fetal_before_4_F10


title: fetal_before_4_D8


title: KO_cre_HSC_P7_1444

description:
KO_2
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI4
Barcode sequence: TGACCA


title: fetal_before_4_D9


title: fetal_before_4_D7


title: KO_cre_HSC_P7_1424

description:
KO_1
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI5
Barcode sequence: ACAGTG


title: PaS cells – Ebf1-/-  Replicate 2

city: Freiburg

first: Senthilkumar

last: Ramamoorthy

address: Stübeweg 51

department: Cellular & Molecular Immunology

data_processing:
The base calling was performed by using BCL2Fastq pipeline (version: 0.3.1) and bcl2fastq (version 2.17.1.14).
RNA-seq: The paired-end RNA-seq datasets were mapped to the mouse reference genome (mm10) using Tophat (v2.0.14).
RNA-seq: The mapped reads were further assembled by using Cufflinks (v2.2.1) and the expression level of the annotated genes (UCSC, mm10) was calculated by Cuffquant. The differential gene expression between the conditions was calculated by using Cuffdiff.
ATAC-seq: The paried-end sequencing reads were trimmed using trim galore (0.4.0), which is a wrapper for the Cutadapt (1.8.1) tools. The trimmed reads were mapped to the mouse genome (mm10) using bowtie2 (2.2.8) with the default settings.
ATAC-seq: The duplicated reads were removed using Picard tools (1.136). The reads mapping to blacklisted regions, mitochondrial genome and the reads with mapping below 30 were removed. The properly mapped reads were used for identifying peaks by MACS2 (2.1.1) with the extsize 125 and q-value cut off 0.01. Peaks were further filtered for a p-value cutoff 10-7.
ATAC-seq: The RPKM normalized tracks for each ATAC-seq replicates were generated using deeptools (version:2.4.1) with the bin size of 50.
Genome_build: mm10
Supplementary_files_format_and_content: RNA-seq: The normalized gene expression values (FPKM) calculated by Cuffnorm (v2.2.1) is provided in TXT format. ATAC-seq: The RPKM normalized ATAC-seq profile track is provided in bigWig format.

source_name: Bone marrow CD45-CD31-Lin-PDGFRα+ Sca1+ cells

extract_protocol:
RNA-seq: Total RNA was isolated from the FACS sorted CAR and PaS cells using RNeasy Micro Kit (Qiagen) according to the manufacturer's instructions. The total mRNA was enriched by using Oligo dT magnetic beads. ATAC-seq: minimum of 10.000 cells were resuspended in 50 µL of cold lysis buffer (10 mM Tris·Cl at pH 7.4, 10 mM NaCl, 3 mM MgCl2, 0.1% [v/v] Igepal CA-630) and incubated for 15 min on ice. The supernatant was discarded after centrifugation, and the nuclei were used for transposition reaction using NEB Nextera DNA sample preparation kit.
The RNA-seq libraries were prepared by using SMART-Seq v4 ultra-low input RNA library preparation protocol according to the manufacturer's instructions. The ATAC-seq libraries were prepared using the NEB Nextera DNA sample preparation kit according to the manufacturer's instructions.

value: Bone marrow


title: fetal_before_4_D3


title: fetal_before_4_D5


title: PaS cells – Ebf1-/-  Replicate 1


title: fetal_before_4_D4


title: fetal_before_4_D11


title: fetal_before_4_D2


title: PaS cells – Ebf1+/+  Replicate 2


title: CAR cells – Ebf1-/-  Replicate 2

source_name: Bone marrow CD45-CD31-Lin-PDGFRα+Sca1- cells


title: fetal_before_4_D12


title: PaS cells – Ebf1+/+  Replicate 1


title: CAR cells – Ebf1-/-  Replicate 1


title: CAR cells – Ebf1+/+  Replicate 2


title: fetal_before_4_E1


title: CAR cells – Ebf1+/+  Replicate 1


title: KO_cre_HSC_P7_1469

description:
KO_4
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI6
Barcode sequence: GCCAAT


title: CD69+CD218+ replicate 2

city: San Antonio

first: Yidong

last: Chen

state: Texas

address: 8403 Floyd Curl Drive, MSC 7784

department: Population Health Sciences

institute: UT Health Science Center at San Antonio

data_processing:
Illumina bcl2fastq software used for base-calling
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to mm9 whole genome using TopHat v2.0.8b
gene count measurements were obtained using HTSeq-count
Genome_build: mm9
Supplementary_files_format_and_content: The processed data files are in tabular format.  The first column contains the gene symbols and the second column contain the read counts of the gene using htseq-count

source_name: day 12 P14 T cells from LCMV infected kidney

growth_protocol: naïve P14 TCR transgenic CD8 T cells were adoptively transferred into C57BL/6 mice followed by LCMV Armstrong infection

extract_protocol:
Total RNA was extracted from sorted cells using Quick-RNA miniprep kit from Zymo Research (Cat# 11-328)
Total RNA samples about 1-2 µg were used for sequencing library preparation according to Illumina TruSeq Total RNA Sample Preparation Guide (Illumina Cat. #: RS-122-2201). Each library was bar-coded and then pooled for cluster generation and sequencing run with 50bp single-end (SE) sequencing protocol.

treatment_protocol: Day 12 post infection, indicated cell subsets were FACS sorted from pooled kidneys

tag: cell subtype

value: Virus-specific CD8+ T cells from the kidney


title: fetal_before_4_C3


title: CD69+CD218- replicate 2


title: fetal_before_4_C7


title: fetal_before_4_D1


title: fetal_before_4_C12


title: CD69+CD218+ replicate 1


title: CD69- replicate 2


title: fetal_before_4_B5


title: KO_cre_HSC_P7_1463

description:
KO_3
mRNA
Library of 96 cells
CEL-Seq2 (Hashimshony et al. 2016, Genome Biology, DOI: 10.1186/s13059-016-0938-8)
Sequencing runs: 1
Illumina barcode: RPI5
Barcode sequence: ACAGTG


title: fetal_before_4_B7


title: fetal_before_4_B9


title: CD69- replicate 1


title: fetal_before_4_D10


title: fetal_before_4_B4


title: fetal_before_4_B12


title: fetal_before_4_B10


title: fetal_before_4_B2


title: fetal_before_4_B3


title: fetal_before_4_A7


title: sarcoma classifier validation case 428

city: Heidelberg

first: Daniel

last: Schrimpf

address: Im Neuenheimer Feld 224

department: Neuropathology

institute: University Hospital Heidelberg, Intitute of Pathology

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 428

hyb_protocol: Illumina protocol

scan_protocol: Illumina iScan System according to the manufacturer's protocol

data_processing:
Bioconductor (Version 3.3) package minifi (Version 1.18) using function 'preprocessIllumina'  Average beta
Average Beta

source_name: sarcoma sample

label_protocol: Illumina protocol

extract_protocol: Illumina protocol

treatment_protocol: An automated extraction was done with a Maxwell system (Promega, Fitchburg, WI, USA) and the Maxwell 16 FFPE Plus LEV DNA Purification Kit according to the manufacturer’s instructions.

value: sarcoma

tag: material preparation

value: KRYO


title: CD69+CD218- replicate 1


title: fetal_before_4_A2


title: fetal_before_4_C2


title: fetal_before_4_A5


title: sarcoma classifier validation case 423

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 423


title: sarcoma classifier validation case 426

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 426


title: sarcoma classifier validation case 425

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 425


title: sarcoma classifier validation case 427

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 427


title: fetal_before_4_A4


title: fetal_before_4_C1


title: sarcoma classifier validation case 424

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 424


title: fetal_before_4_A1


title: fetal_before_4_A11


title: sarcoma classifier validation case 422

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 422


title: sarcoma classifier validation case 421

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 421

value: FFPE


title: fetal_before_4_A12


title: fetal_before_3_H9


title: fetal_before_3_H5


title: fetal_before_3_H12


title: fetal_before_3_H11


title: fetal_before_3_H10


title: sarcoma classifier validation case 417

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 417


title: sarcoma classifier validation case 419

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 419


title: fetal_before_3_H1


title: sarcoma classifier validation case 420

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 420


title: sarcoma classifier validation case 416

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 416


title: sarcoma classifier validation case 415

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 415


title: fetal_before_3_G8


title: fetal_before_3_G9


title: sarcoma classifier validation case 413

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 413


title: sarcoma classifier validation case 414

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 414


title: fetal_before_3_G5


title: fetal_before_3_G4


title: fetal_before_3_G2


title: sarcoma classifier validation case 410

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 410


title: sarcoma classifier validation case 411

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 411


title: fetal_before_3_G11


title: fetal_before_3_G10


title: fetal_before_3_G1


title: sarcoma classifier validation case 418

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 418


title: sarcoma classifier validation case 408

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 408


title: fetal_before_3_F6


title: sarcoma classifier validation case 406

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 406


title: sarcoma classifier validation case 412

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 412


title: sarcoma classifier validation case 409

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 409


title: sarcoma classifier validation case 407

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 407


title: fetal_before_3_F7


title: sarcoma classifier validation case 403

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 403


title: fetal_before_3_F9


title: fetal_before_3_E8


title: sarcoma classifier validation case 404

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 404


title: fetal_before_3_E9


title: fetal_before_3_F10


title: sarcoma classifier validation case 405

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 405


title: fetal_before_3_F5


title: sarcoma classifier validation case 401

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 401


title: sarcoma classifier validation case 402

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 402


title: fetal_before_3_E7


title: sarcoma classifier validation case 399

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 399


title: fetal_before_3_E3


title: sarcoma classifier validation case 398

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 398


title: fetal_before_3_E5


title: fetal_before_3_E2


title: fetal_before_3_D9


title: sarcoma classifier validation case 400

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 400


title: sarcoma classifier validation case 397

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 397


title: sarcoma classifier validation case 395

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 395


title: sarcoma classifier validation case 394

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 394


title: sarcoma classifier validation case 396

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 396


title: sarcoma classifier validation case 391

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 391


title: sarcoma classifier validation case 390

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 390


title: sarcoma classifier validation case 393

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 393


title: sarcoma classifier validation case 392

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 392


title: fetal_before_3_D12


title: fetal_before_3_D7


title: fetal_before_3_D3


title: sarcoma classifier validation case 389

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 389


title: fetal_before_3_D5


title: fetal_before_3_D8


title: GM_Organoids_4

city: Rome

first: Evelina

last: Miele

address: Piazza di Sant'Onofrio 4

department: Oncoematologia

country: Italy

institute: Ospedale Pediatrico Bambino Gesù

hyb_protocol: bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation EPIC Beadchip using standard Illumina protocol

scan_protocol: Arrays were imaged using iScan Platform using standard recommended Illumina setting

data_processing: GenomeStudio software v2.0. Beta values are not normalized.

label: Cy5 and Cy3

source_name: GM G3 organoids in vivo

label_protocol: Standard Illumina Protocol

growth_protocol: Cerebellar organoids were cultured in vitro and were electroporated at 35 days of differentiation protocol, were dissociated into Neurobasal Medium and injected intracranially into nude mice.  The mice were sacrificed at the experimental endpoint and intraventricularly perfused with 4% PFA, and brains were collected, cryoprotected in 30% sucrose and embedded in Frozen Section Compound.

extract_protocol: Genomic DNA was extracted with phenol- chloroform and precipitated with isopropanol.

tag: gender

value: M

tag: age

value: C-MYC,Gfi1 organoids in vivo

tag: histology

tag: molecular subgroup

value: G3 GM Organoids


title: fetal_before_3_D4

tag: cell type


title: sarcoma classifier validation case 382

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 382


title: sarcoma classifier validation case 387

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 387


title: fetal_before_3_D11


title: sarcoma classifier validation case 385

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 385


title: fetal_before_3_E10


title: sarcoma classifier validation case 386

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 386


title: fetal_before_3_C9


title: sarcoma classifier validation case 388

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 388


title: fetal_before_3_D1


title: fetal_before_3_C8


title: sarcoma classifier validation case 383

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 383


title: fetal_before_3_C3


title: fetal_before_3_C4


title: sarcoma classifier validation case 384

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 384


title: OM_Organoids_3

source_name: OM G3 organoids in vivo

value: OM G3 organoids in vivo

value: G3 OM Organoids


title: GM_Organoids_1


title: fetal_before_3_C2

value: Fetal

value: size


title: GM_Organoids_5


title: sarcoma classifier validation case 379

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 379


title: fetal_before_3_B9


title: sarcoma classifier validation case 377

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 377


title: sarcoma classifier validation case 374

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 374


title: sarcoma classifier validation case 378

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 378


title: sarcoma classifier validation case 376

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 376


title: sarcoma classifier validation case 381

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 381


title: GM_Organoids_2


title: sarcoma classifier validation case 371

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 371


title: fetal_before_3_B8


title: fetal_before_3_C12


title: GM_Organoids_3


title: fetal_before_3_A6


title: OM_Organoids_4


title: fetal_before_3_B2


title: fetal_before_3_B3


title: sarcoma classifier validation case 375

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 375


title: fetal_before_3_B5


title: sarcoma classifier validation case 373

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 373


title: fetal_before_3_B10


title: fetal_before_3_A9


title: fetal_before_3_A7


title: sarcoma classifier validation case 372

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 372


title: fetal_before_3_A3


title: fetal_before_3_A10


title: sarcoma classifier validation case 368

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 368


title: fetal_before_3_C1


title: fetal_before_2_H4


title: fetal_before_2_H9


title: fetal_before_2_H3


title: fetal_before_2_H2


title: sarcoma classifier validation case 358

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 358


title: sarcoma classifier validation case 361

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 361


title: fetal_before_2_H11


title: sarcoma classifier validation case 363

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 363


title: sarcoma classifier validation case 360

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 360


title: fetal_before_2_H5


title: sarcoma classifier validation case 359

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 359


title: fetal_before_2_H12


title: fetal_before_2_H1


title: sarcoma classifier validation case 362

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 362


title: sarcoma classifier validation case 365

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 365


title: fetal_before_2_H10


title: fetal_before_2_G8


title: sarcoma classifier validation case 357

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 357


title: sarcoma classifier validation case 369

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 369


title: fetal_before_2_G7


title: sarcoma classifier validation case 367

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 367


title: sarcoma classifier validation case 380

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 380


title: fetal_before_2_G6


title: sarcoma classifier validation case 364

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 364


title: sarcoma classifier validation case 355

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 355


title: fetal_before_2_G9


title: sarcoma classifier validation case 354

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 354


title: fetal_before_2_G10


title: fetal_before_2_G2


title: fetal_before_2_G5


title: sarcoma classifier validation case 353

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 353


title: fetal_before_2_G11


title: sarcoma classifier validation case 351

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 351


title: sarcoma classifier validation case 350

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 350


title: sarcoma classifier validation case 352

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 352


title: fetal_before_2_G1


title: sarcoma classifier validation case 348

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 348


title: fetal_before_2_F8


title: sarcoma classifier validation case 366

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 366


title: sarcoma classifier validation case 347

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 347


title: sarcoma classifier validation case 349

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 349


title: fetal_before_2_F6


title: sarcoma classifier validation case 346

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 346


title: fetal_before_2_F5


title: sarcoma classifier validation case 345

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 345


title: fetal_before_2_F7


title: sarcoma classifier validation case 344

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 344


title: fetal_before_2_F2


title: fetal_before_2_F4


title: sarcoma classifier validation case 343

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 343


title: sarcoma classifier validation case 356

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 356


title: sarcoma classifier validation case 342

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 342


title: fetal_before_2_F11


title: sarcoma classifier validation case 341

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 341


title: sarcoma classifier validation case 339

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 339


title: fetal_before_2_E9


title: fetal_before_2_E8


title: sarcoma classifier validation case 334

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 334


title: fetal_before_2_F9


title: sarcoma classifier validation case 338

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 338


title: fetal_before_2_E6


title: sarcoma classifier validation case 333

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 333


title: sarcoma classifier validation case 337

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 337


title: fetal_before_2_E4


title: fetal_before_2_E3


title: sarcoma classifier validation case 335

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 335


title: fetal_before_2_E7


title: fetal_before_3_C10


title: fetal_before_2_E5


title: fetal_before_2_E2


title: sarcoma classifier validation case 331

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 331


title: fetal_before_2_E10


title: fetal_before_2_F10


title: sarcoma classifier validation case 330

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 330


title: sarcoma classifier validation case 329

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 329


title: fetal_before_2_E1


title: fetal_before_2_D5


title: sarcoma classifier validation case 328

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 328


title: fetal_before_2_D4


title: sarcoma classifier validation case 336

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 336


title: fetal_before_2_D3


title: sarcoma classifier validation case 323

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 323


title: sarcoma classifier validation case 327

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 327


title: sarcoma classifier validation case 326

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 326


title: fetal_before_2_D2


title: sarcoma classifier validation case 324

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 324


title: fetal_before_2_D10


title: fetal_before_2_D12


title: sarcoma classifier validation case 321

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 321


title: sarcoma classifier validation case 322

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 322


title: fetal_before_2_C9


title: fetal_before_2_E11


title: fetal_before_2_D1


title: sarcoma classifier validation case 320

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 320


title: sarcoma classifier validation case 332

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 332


title: sarcoma classifier validation case 318

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 318


title: sarcoma classifier validation case 325

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 325


title: sarcoma classifier validation case 317

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 317


title: fetal_before_2_C7


title: fetal_before_2_C6


title: sarcoma classifier validation case 319

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 319


title: fetal_before_2_C3


title: sarcoma classifier validation case 370

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 370


title: fetal_before_2_C2


title: sarcoma classifier validation case 315

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 315


title: sarcoma classifier validation case 340

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 340


title: fetal_before_2_F12


title: fetal_before_2_C12


title: sarcoma classifier validation case 312

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 312


title: sarcoma classifier validation case 314

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 314


title: fetal_before_2_C11


title: fetal_before_2_C10


title: fetal_before_2_C1


title: fetal_before_2_B9


title: sarcoma classifier validation case 313

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 313


title: fetal_before_2_B4


title: sarcoma classifier validation case 309

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 309


title: fetal_before_2_B7


title: sarcoma classifier validation case 308

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 308


title: sarcoma classifier validation case 311

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 311


title: fetal_before_2_C8


title: sarcoma classifier validation case 305

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 305


title: sarcoma classifier validation case 307

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 307


title: sarcoma classifier validation case 306

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 306


title: sarcoma classifier validation case 316

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 316


title: fetal_before_2_B10


title: fetal_before_2_B1


title: sarcoma classifier validation case 304

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 304


title: sarcoma classifier validation case 303

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 303


title: fetal_before_2_A7


title: sarcoma classifier validation case 302

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 302


title: sarcoma classifier validation case 310

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 310


title: sarcoma classifier validation case 301

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 301


title: fetal_before_2_A12


title: sarcoma classifier validation case 300

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 300


title: fetal_before_2_A5


title: fetal_before_2_A1


title: sarcoma classifier validation case 299

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 299


title: fetal_before_2_A3


title: fetal_before_2_A11


title: sarcoma classifier validation case 297

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 297


title: sarcoma classifier validation case 298

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 298


title: fetal_after_5_F10

source_name: Human graft in rat brain


title: fetal_after_5_H2


title: fetal_after_5_G9


title: fetal_before_2_B2


title: sarcoma classifier validation case 294

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 294


title: sarcoma classifier validation case 293

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 293


title: fetal_before_2_D11


title: fetal_after_5_E5


title: fetal_after_5_E12


title: sarcoma classifier validation case 292

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 292


title: fetal_after_5_D11


title: sarcoma classifier validation case 291

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 291


title: fetal_after_5_C2


title: fetal_after_5_C10


title: sarcoma classifier validation case 290

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 290


title: fetal_after_5_A8


title: sarcoma classifier validation case 289

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 289


title: sarcoma classifier validation case 287

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 287


title: fetal_after_5_A6


title: sarcoma classifier validation case 288

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 288


title: fetal_after_4_E6


title: sarcoma classifier validation case 286

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 286


title: fetal_after_4_D4


title: sarcoma classifier validation case 296

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 296


title: sarcoma classifier validation case 295

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 295


title: fetal_after_4_D8


title: sarcoma classifier validation case 285

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 285


title: sarcoma classifier validation case 284

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 284


title: fetal_after_4_C9


title: fetal_after_4_C1


title: fetal_after_4_B2


title: sarcoma classifier validation case 281

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 281


title: fetal_after_4_A6


title: sarcoma classifier validation case 282

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 282


title: sarcoma classifier validation case 283

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 283


title: fetal_after_4_A3


title: sarcoma classifier validation case 280

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 280


title: fetal_after_3_H9


title: sarcoma classifier validation case 279

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 279


title: sarcoma classifier validation case 278

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 278


title: fetal_after_3_H10


title: fetal_after_3_G12


title: sarcoma classifier validation case 277

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 277


title: fetal_after_3_F10


title: fetal_after_3_F7


title: sarcoma classifier validation case 274

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 274


title: sarcoma classifier validation case 275

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 275


title: sarcoma classifier validation case 273

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 273


title: fetal_after_3_E6


title: fetal_before_2_B3


title: fetal_after_3_F12


title: fetal_after_3_D7


title: fetal_after_3_C6


title: sarcoma classifier validation case 272

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 272


title: sarcoma classifier validation case 271

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 271


title: sarcoma classifier validation case 270

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 270


title: fetal_after_3_D10


title: sarcoma classifier validation case 268

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 268


title: fetal_after_3_A12


title: sarcoma classifier validation case 267

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 267


title: fetal_after_3_B12


title: sarcoma classifier validation case 266

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 266


title: fetal_after_2_E8


title: fetal_after_2_D9


title: sarcoma classifier validation case 263

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 263


title: sarcoma classifier validation case 276

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 276


title: sarcoma classifier validation case 265

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 265


title: fetal_after_2_E2


title: sarcoma classifier validation case 264

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 264


title: fetal_after_2_C6


title: fetal_after_2_C3


title: sarcoma classifier validation case 261

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 261


title: sarcoma classifier validation case 259

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 259


title: fetal_after_2_C10


title: sarcoma classifier validation case 262

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 262


title: fetal_after_2_B12


title: sarcoma classifier validation case 258

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 258


title: fetal_after_2_B5


title: sarcoma classifier validation case 257

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 257


title: sarcoma classifier validation case 269

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 269


title: fetal_after_3_B6


title: fetal_after_2_A7


title: sarcoma classifier validation case 256

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 256


title: fetal_after_3_A1


title: fetal_after_2_A12


title: fetal_after_1_G10


title: fetal_after_1_G1


title: sarcoma classifier validation case 254

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 254


title: fetal_after_1_F9


title: fetal_after_1_F3


title: fetal_after_2_D10


title: fetal_after_1_F7


title: sarcoma classifier validation case 251

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 251


title: sarcoma classifier validation case 252

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 252


title: sarcoma classifier validation case 250

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 250


title: sarcoma classifier validation case 260

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 260


title: sarcoma classifier validation case 245

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 245


title: sarcoma classifier validation case 247

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 247


title: fetal_after_1_D8


title: fetal_after_1_F1


title: sarcoma classifier validation case 248

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 248


title: fetal_after_1_D6


title: fetal_after_1_D7


title: fetal_after_1_E4


title: sarcoma classifier validation case 244

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 244


title: sarcoma classifier validation case 255

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 255


title: fetal_after_1_D5


title: sarcoma classifier validation case 241

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 241


title: fetal_after_1_C2


title: sarcoma classifier validation case 253

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 253


title: fetal_after_1_C12


title: sarcoma classifier validation case 243

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 243


title: sarcoma classifier validation case 242

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 242


title: fetal_after_1_F2


title: sarcoma classifier validation case 238

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 238


title: sarcoma classifier validation case 239

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 239


title: fetal_after_1_A12


title: fetal_after_1_B8


title: sarcoma classifier validation case 237

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 237


title: fetal_after_1_B5


title: sarcoma classifier validation case 236

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 236


title: sarcoma classifier validation case 249

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 249


title: fetal_after_1_A7


title: sarcoma classifier validation case 246

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 246


title: sarcoma classifier validation case 232

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 232


title: fetal_after_1_A11


title: RC17_before_15_H8


title: sarcoma classifier validation case 234

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 234


title: sarcoma classifier validation case 233

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 233


title: sarcoma classifier validation case 231

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 231


title: RC17_before_15_H7


title: sarcoma classifier validation case 230

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 230


title: fetal_after_1_C9


title: sarcoma classifier validation case 229

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 229


title: RC17_before_15_H3


title: RC17_before_15_H2


title: RC17_before_15_H5


title: RC17_before_15_H6


title: RC17_before_15_H1


title: RC17_before_15_G8


title: RC17_before_15_G6


title: sarcoma classifier validation case 225

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 225


title: sarcoma classifier validation case 227

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 227


title: sarcoma classifier validation case 224

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 224


title: RC17_before_15_G2


title: RC17_before_15_G4


title: sarcoma classifier validation case 226

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 226


title: RC17_before_15_G9


title: sarcoma classifier validation case 223

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 223


title: RC17_before_15_H9


title: sarcoma classifier validation case 220

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 220


title: sarcoma classifier validation case 219

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 219


title: sarcoma classifier validation case 221

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 221


title: sarcoma classifier validation case 222

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 222


title: RC17_before_15_F9


title: RC17_before_15_G11


title: RC17_before_15_G1


title: sarcoma classifier validation case 228

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 228


title: sarcoma classifier validation case 215

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 215


title: sarcoma classifier validation case 217

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 217


title: RC17_before_15_F7


title: sarcoma classifier validation case 216

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 216


title: RC17_before_15_F8


title: RC17_before_15_F5


title: sarcoma classifier validation case 235

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 235


title: RC17_before_15_F6


title: sarcoma classifier validation case 214

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 214


title: sarcoma classifier validation case 213

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 213


title: RC17_before_15_F4


title: sarcoma classifier validation case 212

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 212


title: RC17_before_15_F3


title: RC17_before_15_F2


title: sarcoma classifier validation case 211

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 211


title: sarcoma classifier validation case 209

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 209


title: RC17_before_15_F10


title: sarcoma classifier validation case 218

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 218


title: RC17_before_15_G10


title: sarcoma classifier validation case 208

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 208


title: sarcoma classifier validation case 206

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 206


title: sarcoma classifier validation case 205

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 205


title: RC17_before_15_F1


title: RC17_before_15_E7


title: sarcoma classifier validation case 204

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 204


title: RC17_before_15_E8


title: RC17_before_15_E4


title: RC17_before_15_E2


title: RC17_before_15_E3


title: sarcoma classifier validation case 202

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 202


title: sarcoma classifier validation case 210

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 210


title: RC17_before_15_E11


title: RC17_before_15_F11


title: RC17_before_15_D9


title: sarcoma classifier validation case 200

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 200


title: RC17_before_15_D8


title: sarcoma classifier validation case 199

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 199


title: sarcoma classifier validation case 197

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 197


title: sarcoma classifier validation case 196

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 196


title: sarcoma classifier validation case 207

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 207


title: RC17_before_15_D6


title: RC17_before_15_D5


title: RC17_before_15_D7


title: RC17_before_15_E9


title: sarcoma classifier validation case 194

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 194


title: sarcoma classifier validation case 193

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 193


title: RC17_before_15_D3


title: sarcoma classifier validation case 192

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 192


title: sarcoma classifier validation case 195

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 195


title: RC17_before_15_D10


title: RC17_before_15_D11


title: RC17_before_15_D4


title: sarcoma classifier validation case 190

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 190


title: RC17_before_15_D1


title: sarcoma classifier validation case 191

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 191


title: RC17_before_15_C9


title: RC17_before_15_D2


title: sarcoma classifier validation case 188

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 188


title: RC17_before_15_C8


title: RC17_before_15_C7


title: sarcoma classifier validation case 187

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 187


title: sarcoma classifier validation case 186

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 186


title: RC17_before_15_C6


title: RC17_before_15_C4


title: sarcoma classifier validation case 185

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 185


title: sarcoma classifier validation case 184

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 184


title: RC17_before_15_C3


title: sarcoma classifier validation case 183

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 183


title: RC17_before_15_C2


title: sarcoma classifier validation case 182

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 182


title: sarcoma classifier validation case 181

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 181


title: sarcoma classifier validation case 180

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 180


title: sarcoma classifier validation case 240

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 240


title: sarcoma classifier validation case 189

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 189


title: RC17_before_15_C1


title: sarcoma classifier validation case 179

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 179


title: RC17_before_15_C10


title: RC17_before_15_B9


title: sarcoma classifier validation case 178

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 178


title: sarcoma classifier validation case 176

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 176


title: sarcoma classifier validation case 177

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 177


title: RC17_before_15_B6


title: RC17_before_15_B5


title: RC17_before_15_B4


title: sarcoma classifier validation case 175

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 175


title: RC17_before_15_B3


title: RC17_before_15_C11


title: sarcoma classifier validation case 173

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 173


title: sarcoma classifier validation case 171

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 171


title: sarcoma classifier validation case 172

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 172


title: sarcoma classifier validation case 170

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 170


title: RC17_before_15_B11


title: RC17_before_15_B2


title: sarcoma classifier validation case 169

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 169


title: RC17_before_15_B7


title: RC17_before_15_B8


title: sarcoma classifier validation case 166

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 166


title: RC17_before_15_A9


title: RC17_before_15_B1


title: sarcoma classifier validation case 167

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 167


title: sarcoma classifier validation case 168

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 168


title: RC17_before_15_A8


title: sarcoma classifier validation case 174

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 174


title: RC17_before_15_A7


title: RC17_before_15_A4


title: sarcoma classifier validation case 163

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 163


title: RC17_before_15_A3


title: sarcoma classifier validation case 162

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 162


title: RC17_before_15_A2


title: RC17_before_15_A11


title: RC17_before_15_B10


title: sarcoma classifier validation case 161

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 161


title: sarcoma classifier validation case 159

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 159


title: RC17_before_15_A1


title: sarcoma classifier validation case 160

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 160


title: RC17_before_15_A10


title: RC17_before_14_H9


title: sarcoma classifier validation case 158

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 158


title: RC17_before_14_H8


title: sarcoma classifier validation case 155

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 155


title: RC17_before_14_H7


title: sarcoma classifier validation case 165

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 165


title: sarcoma classifier validation case 156

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 156


title: RC17_before_14_H6


title: sarcoma classifier validation case 164

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 164


title: RC17_before_14_H5


title: sarcoma classifier validation case 157

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 157


title: sarcoma classifier validation case 153

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 153


title: RC17_before_14_H4


title: sarcoma classifier validation case 154

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 154


title: sarcoma classifier validation case 203

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 203


title: RC17_before_14_H3


title: RC17_before_14_H2


title: RC17_before_14_H12


title: RC17_before_15_E6


title: sarcoma classifier validation case 151

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 151


title: sarcoma classifier validation case 150

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 150


title: sarcoma classifier validation case 152

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 152


title: RC17_before_14_H11


title: sarcoma classifier validation case 149

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 149


title: RC17_before_14_G9


title: RC17_before_14_H10


title: sarcoma classifier validation case 146

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 146


title: RC17_before_14_G7


title: sarcoma classifier validation case 144

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 144


title: RC17_before_14_G4


title: sarcoma classifier validation case 141

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 141


title: sarcoma classifier validation case 142

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 142


title: sarcoma classifier validation case 143

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 143


title: RC17_before_14_G6


title: RC17_before_14_G12


title: RC17_before_14_G2


title: sarcoma classifier validation case 140

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 140


title: RC17_before_14_G8


title: RC17_before_14_G3


title: RC17_before_14_G11


title: sarcoma classifier validation case 147

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 147


title: RC17_before_14_G1


title: sarcoma classifier validation case 148

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 148


title: sarcoma classifier validation case 139

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 139


title: sarcoma classifier reference case 1056

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1056


title: sarcoma classifier reference case 1071

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1071


title: sarcoma classifier reference case 1070

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1070


title: RC17_before_14_G10


title: RC17_before_14_F9


title: sarcoma classifier reference case 1055

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1055


title: sarcoma classifier validation case 145

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 145


title: RC17_before_14_F8


title: sarcoma classifier validation case 138

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 138


title: RC17_before_14_G5


title: RC17_before_14_F7


title: sarcoma classifier validation case 136

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 136


title: RC17_before_14_F6


title: RC17_before_14_F5


title: sarcoma classifier validation case 137

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 137


title: RC17_before_14_F4


title: sarcoma classifier reference case 1054

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1054


title: sarcoma classifier reference case 1052

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1052


title: RC17_before_14_F12


title: sarcoma classifier validation case 135

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 135


title: sarcoma classifier validation case 134

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 134


title: sarcoma classifier reference case 1051

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1051


title: RC17_before_14_F2


title: sarcoma classifier validation case 132

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 132


title: RC17_before_14_F11


title: RC17_before_14_F10


title: sarcoma classifier reference case 1053

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1053


title: sarcoma classifier reference case 1048

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1048


title: sarcoma classifier validation case 131

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 131


title: sarcoma classifier validation case 133

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 133


title: RC17_before_14_F1


title: RC17_before_14_E6


title: RC17_before_14_E8


title: RC17_before_14_E7


title: RC17_before_14_E9


title: RC17_before_14_E5


title: sarcoma classifier validation case 130

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 130


title: RC17_before_14_F3


title: RC17_before_14_E4


title: RC17_before_14_E3


title: sarcoma classifier validation case 129

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 129


title: sarcoma classifier reference case 1047

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1047


title: sarcoma classifier reference case 1046

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1046


title: sarcoma classifier validation case 128

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 128


title: RC17_before_14_E12


title: RC17_before_14_E2


title: RC17_before_14_E11


title: sarcoma classifier validation case 127

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 127


title: sarcoma classifier validation case 126

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 126


title: RC17_before_14_E1


title: sarcoma classifier reference case 1043

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1043


title: RC17_before_14_D8


title: RC17_before_14_E10


title: sarcoma classifier reference case 1041

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1041


title: RC17_before_14_D6


title: sarcoma classifier validation case 125

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 125


title: RC17_before_14_D7


title: sarcoma classifier reference case 1042

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1042


title: sarcoma classifier validation case 124

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 124


title: sarcoma classifier reference case 1040

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1040


title: sarcoma classifier reference case 1039

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1039


title: sarcoma classifier validation case 123

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 123


title: sarcoma classifier reference case 1038

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1038


title: RC17_before_14_D3


title: RC17_before_14_D4


title: RC17_before_14_D2


title: sarcoma classifier reference case 1037

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1037


title: RC17_before_14_D11


title: RC17_before_14_D9


title: RC17_before_14_D1


title: sarcoma classifier validation case 121

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 121


title: sarcoma classifier validation case 120

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 120


title: RC17_before_14_C9


title: RC17_before_14_C8


title: RC17_before_14_D5


title: sarcoma classifier reference case 1035

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1035


title: RC17_before_14_C7


title: sarcoma classifier reference case 1036

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1036


title: RC17_before_14_C6


title: sarcoma classifier reference case 1050

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1050


title: RC17_before_14_C3


title: RC17_before_14_D12


title: sarcoma classifier validation case 118

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 118


title: RC17_before_14_C2


title: sarcoma classifier reference case 1034

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1034


title: sarcoma classifier validation case 117

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 117


title: RC17_before_14_C12


title: RC17_before_14_D10


title: RC17_before_14_C10


title: sarcoma classifier validation case 116

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 116


title: RC17_before_14_C1


title: sarcoma classifier validation case 115

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 115


title: RC17_before_14_B8


title: RC17_before_14_B7


title: RC17_before_14_C5


title: RC17_before_14_B5


title: sarcoma classifier validation case 119

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 119


title: RC17_before_14_B6


title: sarcoma classifier validation case 113

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 113


title: sarcoma classifier reference case 979

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 979


title: RC17_before_14_B4


title: sarcoma classifier reference case 981

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 981


title: sarcoma classifier reference case 1029

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 1029


title: sarcoma classifier reference case 978

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 978


title: sarcoma classifier validation case 112

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 112


title: RC17_before_14_B2


title: RC17_before_14_B12


title: RC17_before_14_B3


title: sarcoma classifier reference case 982

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 982


title: RC17_before_14_B11


title: sarcoma classifier validation case 111

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 111


title: sarcoma classifier reference case 977

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 977


title: sarcoma classifier reference case 976

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 976


title: RC17_before_14_B10


title: RC17_before_14_B1


title: sarcoma classifier validation case 114

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 114


title: sarcoma classifier reference case 980

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 980


title: sarcoma classifier validation case 109

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 109


title: RC17_before_14_A9


title: RC17_before_14_A8


title: RC17_before_14_A7


title: sarcoma classifier reference case 975

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 975


title: sarcoma classifier reference case 974

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 974


title: sarcoma classifier validation case 108

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 108


title: sarcoma classifier validation case 107

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 107


title: sarcoma classifier reference case 972

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 972


title: sarcoma classifier reference case 973

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 973


title: RC17_before_14_A11


title: RC17_before_14_A1


title: sarcoma classifier validation case 106

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 106


title: sarcoma classifier reference case 971

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 971


title: sarcoma classifier validation case 105

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 105


title: sarcoma classifier reference case 970

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 970


title: RC17_before_14_A2


title: RC17_before_13_H8


title: sarcoma classifier validation case 104

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 104


title: sarcoma classifier validation case 110

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 110


title: RC17_before_13_H6


title: sarcoma classifier reference case 969

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 969


title: RC17_before_13_H5


title: sarcoma classifier validation case 103

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 103


title: sarcoma classifier reference case 968

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 968


title: RC17_before_14_A5


title: RC17_before_14_A4


title: RC17_before_13_H12


title: sarcoma classifier validation case 122

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 122


title: RC17_before_14_A12


title: sarcoma classifier reference case 967

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 967


title: sarcoma classifier validation case 198

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 198


title: sarcoma classifier validation case 102

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 102


title: RC17_before_13_G8


title: RC17_before_13_G7


title: sarcoma classifier validation case 101

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 101


title: sarcoma classifier reference case 966

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 966


title: RC17_before_13_H10


title: RC17_before_13_G6


title: RC17_before_13_H7


title: sarcoma classifier validation case 100

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 100


title: sarcoma classifier reference case 965

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 965


title: RC17_before_13_G3


title: sarcoma classifier validation case 99

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 99


title: RC17_before_13_G4


title: RC17_before_13_G5


title: RC17_before_13_G2


title: RC17_before_13_H2


title: sarcoma classifier validation case 201

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 201


title: sarcoma classifier reference case 964

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 964


title: sarcoma classifier reference case 963

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 963


title: sarcoma classifier validation case 97

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 97


title: RC17_before_13_G12


title: RC17_before_13_G11


title: RC17_before_13_F9


title: RC17_before_13_G10


title: RC17_before_13_F7


title: RC17_before_13_F6


title: sarcoma classifier validation case 96

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 96


title: RC17_before_13_F5


title: sarcoma classifier validation case 95

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 95


title: RC17_before_13_F4


title: sarcoma classifier validation case 94

description:
Methylation data from sarcoma sample
VALIDATION_SAMPLE 94


title: RC17_before_13_F3


title: sarcoma classifier reference case 938

description:
Methylation data from sarcoma sample
REFERENCE_SAMPLE 938