title: SCN-12yrs-M-Cell19

description:
G_J25_P1Cell_19_USPD16100592-AK1584-AK400_H2W2YBBXX_L7_1
Neutrophils from a 12 year old male patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-Irf8_GMP_Cell34

status: Public on Apr 06 2020

type: SRA

city: Cincinnati

first: H. Leighton

last: Grimes

state: OH

address: 3333 Burnet Ave. MLC 7038

department: Immunobiology

country: USA

institute: Cincinnati Childrens Hospital Medical Center

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_34

library_source: transcriptomic

data_processing:
Bone marrow was extracted by crushing hindlimbs isolated from mice immediately following euthanasia. The single cell suspension was enriched using CD117 Microbeads on an AutoMACS Pro (Mitenyi) and stained with fluorchome-conjugated antibodies for FACS-sorting, then cells were separated using the Fluidigm C1 system and lysed on chip for subsequent reverse transcription.
Single-cell RNA-Seq data were analyzed using RSEM to estimate transcripts per million mapped reads (TPM) for all genes.
Genome_build: mm9
Supplementary_files_format_and_content: [exp.R412X-Irf8-all.txt]  Tab-delimited text file of log2 (incremented by 1 before log2) TPM RSEM expression values
Supplementary_files_format_and_content: [groups.R412X-Irf8-all.txt]  Group annotations assigned by cellHarmony

molecule: total RNA

organism: Mus musculus

source_name: Bone marrow

extract_protocol:
Bone marrow was extracted by crushing hindlimbs isolated from mice immediately following euthanasia. The single cell suspension was enriched using CD117 Microbeads on an AutoMACS Pro (Mitenyi) and stained with fluorchome-conjugated antibodies for FACS-sorting of Lineage- CD117+ Sca-1- CD34+ CD16/32high cells were separated using the Fluidigm C1 system and lysed on chip for subsequent reverse transcription.
cDNA was made with the SMARTer mRNA-Seq Kit (Clontech) and libraries were constructed using the Nextera XT DNA Library Preparation Kit (Illumina).

tag: strain

tag: genotype

tag: cell type

value: Bone marrow derived GMP

tag: cdna synthesis

value: Fluidigm C1 protocol

tag: library prep

tag: sequencing parameters

value: 150bp Paired-End, 150 million reads/96 cell library


title: Gfi1-R412X-Irf8_GMP_Cell5

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_5

value: Nextera XT DNA Library Preparation Kit (Illumina)


title: SCN-12yrs-M-Cell18

description:
G_J25_P1Cell_18_USPD16100592-AK1583-AK391_H2W2YBBXX_L7_1
Neutrophils from a 12 year old male patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

data_processing:
RSEM version 1.3.0 was run using a GTF transcriptome referenced that contained both exon and intron regions (pre-mRNA sequences) for Ensembl version 72 (hg19). 96 single-cell libraries captured per donor or patient, with only 3 cells removed with less than 100,000 reads. Differential expression between each SCN patient and the combination of healthy donor was conducted in the software AltAnalyze, using an empirical Bayes moderated t-test p<0.05 (FDR corrected), a cell-level, to identify SCN impacted genes.
Genome_build: hg19
Supplementary_files_format_and_content: Tab-delimited text file of log2 (incremented by 1 before log2) TPM RSEM expression values
Supplementary_files_format_and_content: donors.Neutrophils-RSEM-TPMs: Donor annotations for individual cells

organism: Homo sapiens

source_name: Peripheral blood neutrophils

extract_protocol:
De-identified clinical data and peripheral blood from healthy donors or neutropenic patients was obtained at Cincinnati Children’s Hospital Medical Center through informed consent under an approved institutional review board research protocol.  Human Neutrophils were enriched from whole blood using the EasySep™ Direct Human Neutrophil Isolation Kit (Stemcell Technologies) and sequenced using the Fluidigm C1 platform using the SMART-Seq v4 chemistry.
cDNA was made with the SMARTer mRNA-Seq Kit version 4 (Clontech) and libraries were constructed using the Nextera XT DNA Library Preparation Kit (Illumina).

value: Peripheral blood neutrophils

value: Fluidigm C1 protocol (v4 chemistry)

value: 75bp Paired-End, 150 million reads/96 cell library

tag: age

value: 12 year old

tag: Sex

value: male

tag: disease

value: with Severe Congenital Neutropenia


title: Gfi1-R412X-Irf8_GMP_Cell46

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_46


title: Gfi1-R412X-Irf8_GMP_Cell33

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_33


title: SCN-12yrs-M-Cell20

description:
G_J25_P1Cell_20_USPD16100592-AK1585-AK428_H2W2YBBXX_L7_1
Neutrophils from a 12 year old male patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-12yrs-M-Cell16

description:
G_J25_P1Cell_16_USPD16100592-AK1859-AK416_H2W2YBBXX_L7_1
Neutrophils from a 12 year old male patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-12yrs-M-Cell17

description:
G_J25_P1Cell_17_USPD16100592-AK1582-AK390_H2W2YBBXX_L7_1
Neutrophils from a 12 year old male patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-Irf8_GMP_Cell12

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_12


title: SCN-12yrs-M-Cell24

description:
G_J25_P1Cell_24_USPD16100592-AK1860-AK416_H2W2YBBXX_L7_1
Neutrophils from a 12 year old male patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-Irf8_GMP_Cell26

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_26


title: Gfi1-R412X-Irf8_GMP_Cell20

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_20


title: SCN-12yrs-M-Cell15

description:
G_J25_P1Cell_15_USPD16100592-AK1858-AK417_H2W2YBBXX_L7_1
Neutrophils from a 12 year old male patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-Irf8_GMP_Cell25

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_25


title: SCN-12yrs-M-Cell14

description:
G_J25_P1Cell_14_USPD16100592-AK1586-AK403_H2W2YBBXX_L7_1
Neutrophils from a 12 year old male patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-Irf8_GMP_Cell4

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_4


title: SCN-12yrs-M-Cell11

description:
G_J25_P1Cell_11_USPD16100592-AK1583-AK400_H2W2YBBXX_L7_1
Neutrophils from a 12 year old male patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-12yrs-M-Cell10

description:
G_J25_P1Cell_10_USPD16100592-AK1582-AK391_H2W2YBBXX_L7_1
Neutrophils from a 12 year old male patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-12yrs-M-Cell13

description:
G_J25_P1Cell_13_USPD16100592-AK1585-AK402_H2W2YBBXX_L7_1
Neutrophils from a 12 year old male patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-Irf8_GMP_Cell11

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_11


title: SCN-12yrs-M-Cell12

description:
G_J25_P1Cell_12_USPD16100592-AK1584-AK428_H2W2YBBXX_L7_1
Neutrophils from a 12 year old male patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-Irf8_GMP_Cell17

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_17


title: Gfi1-R412X-Irf8_GMP_Cell18

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_18


title: Gfi1-R412X-Irf8_GMP_Cell44

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_44


title: Gfi1-R412X-Irf8_GMP_Cell3

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_3


title: Gfi1-R412X-Irf8_GMP_Cell9

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_9


title: control-13yrs-F-Cell9

description:
G_F28_93Cell_9_USPD16100593-AK1581-AK415_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: 13 year old

value: female

value: healthy


title: Gfi1-R412X-Irf8_GMP_Cell19

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_19


title: SCN-12yrs-M-Cell1

description:
G_J25_P1Cell_1_USPD16100592-AK1579-AK390_H2W2YBBXX_L7_1
Neutrophils from a 12 year old male patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell8

description:
G_F28_93Cell_8_USPD16100593-AK1858-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell7

description:
G_F28_93Cell_7_USPD16100593-AK1586-AK425_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-Irf8_GMP_Cell2

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_2


title: control-13yrs-F-Cell62

description:
G_F28_93Cell_62_USPD16100593-AK205-AK427_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell61

description:
G_F28_93Cell_61_USPD16100593-AK366-AK419_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-Irf8_GMP_Cell1

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_1


title: Gfi1-R412X-Irf8_GMP_Cell43

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_43


title: Gfi1-R412X-Irf8_GMP_Cell42

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_42


title: control-13yrs-F-Cell60

description:
G_F28_93Cell_60_USPD16100593-AK1860-AK394_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell6

description:
G_F28_93Cell_6_USPD16100593-AK1585-AK427_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell196

description:
Gfi1-R412X-HTZ GMP
Jul31_2017_Cell_96

data_processing:
RNA reads were aligned to the reference mm9 mouse genome using Bowtie2.
Single-cell RNA-Seq data were analyzed using RSEM to estimate transcripts per million mapped reads (TPM) for all genes.
Genome_build: mm9
Supplementary_files_format_and_content: [exp.R412X-HTZ.txt]  Tab-delimited text file of log2 (incremented by 1 before log2) TPM RSEM expression values
Supplementary_files_format_and_content: [groups.R412X-HTZ.txt]  Group annotations assigned by cellHarmony

extract_protocol:
Bone marrow was extracted by crushing hindlimbs isolated from mice immediately following euthanasia. The single cell suspension was enriched using CD117 Microbeads on an AutoMACS Pro (Mitenyi) and stained with fluorchome-conjugated antibodies for FACS-sorting, then cells were separated using the Fluidigm C1 system and lysed on chip for subsequent reverse transcription.
cDNA was made with the SMARTer mRNA-Seq Kit (Clontech) and libraries were constructed using the Nextera XT DNA Library Preparation Kit (Illumina).


title: Gfi1-R412X-HTZ_GMP_Cell195

description:
Gfi1-R412X-HTZ GMP
Jul31_2017_Cell_95


title: control-13yrs-F-Cell58

description:
G_F28_93Cell_58_USPD16100593-AK1858-AK414_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell59

description:
G_F28_93Cell_59_USPD16100593-AK1859-AK413_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell57

description:
G_F28_93Cell_57_USPD16100593-AK1586-AK415_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-Irf8_GMP_Cell10

description:
Gfi1-R412X-Irf8 GMP
Feb20_x_x_272_Cell_10


title: Gfi1-R412X-HTZ_GMP_Cell194

description:
Gfi1-R412X-HTZ GMP
Jul31_2017_Cell_94


title: control-13yrs-F-Cell56

description:
G_F28_93Cell_56_USPD16100593-AK1579-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell54

description:
G_F28_93Cell_54_USPD16100593-AK366-AK427_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell096

description:
Gfi1-R412X-HTZ GMP
July31_Cell_96


title: Gfi1-R412X-HTZ_GMP_Cell088

description:
Gfi1-R412X-HTZ GMP
July31_Cell_88


title: control-13yrs-F-Cell55

description:
G_F28_93Cell_55_USPD16100593-AK205-AK425_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell089

description:
Gfi1-R412X-HTZ GMP
July31_Cell_89


title: Gfi1-R412X-HTZ_GMP_Cell095

description:
Gfi1-R412X-HTZ GMP
July31_Cell_95


title: control-13yrs-F-Cell51

description:
G_F28_93Cell_51_USPD16100593-AK1858-AK413_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell53

description:
G_F28_93Cell_53_USPD16100593-AK1860-AK419_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell094

description:
Gfi1-R412X-HTZ GMP
July31_Cell_94


title: Gfi1-R412X-HTZ_GMP_Cell087

description:
Gfi1-R412X-HTZ GMP
July31_Cell_87


title: Gfi1-R412X-HTZ_GMP_Cell092

description:
Gfi1-R412X-HTZ GMP
July31_Cell_92


title: Gfi1-R412X-HTZ_GMP_Cell091

description:
Gfi1-R412X-HTZ GMP
July31_Cell_91


title: control-13yrs-F-Cell48

description:
G_F28_93Cell_48_USPD16100593-AK1586-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell40

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell40-D8


title: control-13yrs-F-Cell49

description:
G_F28_93Cell_49_USPD16100593-AK1585-AK415_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell46

description:
G_F28_93Cell_46_USPD16100593-AK1584-AK427_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell47

description:
G_F28_93Cell_47_USPD16100593-AK1585-AK425_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell54

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell54-G10


title: Gfi1-R412X-HTZ_GMP_Cell47

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell47-F9


title: Gfi1-R412X-HTZ_GMP_Cell61

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell61-B12


title: Gfi1-R412X-HTZ_GMP_Cell090

description:
Gfi1-R412X-HTZ GMP
July31_Cell_90


title: control-13yrs-F-Cell43

description:
G_F28_93Cell_43_USPD16100593-AK1581-AK413_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell44

description:
G_F28_93Cell_44_USPD16100593-AK1582-AK394_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell46

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell46-E9


title: Gfi1-R412X-HTZ_GMP_Cell32

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell32-H6


title: control-13yrs-F-Cell42

description:
G_F28_93Cell_42_USPD16100593-AK1579-AK414_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell50

description:
G_F28_93Cell_50_USPD16100593-AK1586-AK414_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell093

description:
Gfi1-R412X-HTZ GMP
July31_Cell_93


title: Gfi1-R412X-HTZ_GMP_Cell60

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell60-H11


title: control-13yrs-F-Cell52

description:
G_F28_93Cell_52_USPD16100593-AK1859-AK394_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell24

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell24-B5


title: control-13yrs-F-Cell4

description:
G_F28_93Cell_4_USPD16100593-AK1583-AK394_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell40

description:
G_F28_93Cell_40_USPD16100593-AK205-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell5

description:
G_F28_93Cell_5_USPD16100593-AK1584-AK419_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell53

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell53-F10


title: Gfi1-R412X-HTZ_GMP_Cell31

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell31-G6


title: Gfi1-R412X-HTZ_GMP_Cell45

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell45-C9


title: control-13yrs-F-Cell35

description:
G_F28_93Cell_35_USPD16100593-AK1586-AK413_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell38

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell38-B8


title: control-13yrs-F-Cell37

description:
G_F28_93Cell_37_USPD16100593-AK1859-AK419_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell36

description:
G_F28_93Cell_36_USPD16100593-AK1858-AK394_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell45

description:
G_F28_93Cell_45_USPD16100593-AK1583-AK419_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell65

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell65-H12


title: Gfi1-R412X-HTZ_GMP_Cell59

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell59-G11


title: Gfi1-R412X-HTZ_GMP_Cell52

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell52-E10


title: control-13yrs-F-Cell34

description:
G_F28_93Cell_34_USPD16100593-AK1585-AK414_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell16

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell16-E3


title: control-13yrs-F-Cell33

description:
G_F28_93Cell_33_USPD16100593-AK1584-AK415_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell23

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell23-A5


title: Gfi1-R412X-HTZ_GMP_Cell30

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell30-E6


title: Gfi1-R412X-HTZ_GMP_Cell44

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell44-A9


title: control-13yrs-F-Cell41

description:
G_F28_93Cell_41_USPD16100593-AK205-AK415_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell32

description:
G_F28_93Cell_32_USPD16100593-AK366-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell3

description:
G_F28_93Cell_3_USPD16100593-AK1582-AK413_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell39

description:
G_F28_93Cell_39_USPD16100593-AK366-AK425_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell30

description:
G_F28_93Cell_30_USPD16100593-AK1859-AK427_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell29

description:
G_F28_93Cell_29_USPD16100593-AK1858-AK419_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell51

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell51-D10


title: Gfi1-R412X-HTZ_GMP_Cell58

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell58-D11


title: Gfi1-R412X-HTZ_GMP_Cell57

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell57-C11


title: Gfi1-R412X-HTZ_GMP_Cell8

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell8-B2


title: Gfi1-R412X-HTZ_GMP_Cell15

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell15-D3


title: control-13yrs-F-Cell27

description:
G_F28_93Cell_27_USPD16100593-AK1585-AK413_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell28

description:
G_F28_93Cell_28_USPD16100593-AK1586-AK394_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell22

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell22-H4


title: Gfi1-R412X-HTZ_GMP_Cell29

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell29-D6


title: control-13yrs-F-Cell23

description:
G_F28_93Cell_23_USPD16100593-AK1859-AK425_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell26

description:
G_F28_93Cell_26_USPD16100593-AK1584-AK414_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell43

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell43-H8


title: control-13yrs-F-Cell24

description:
G_F28_93Cell_24_USPD16100593-AK1860-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell25

description:
G_F28_93Cell_25_USPD16100593-AK1583-AK415_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell21

description:
G_F28_93Cell_21_USPD16100593-AK1586-AK419_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell50

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell50-A10


title: Gfi1-R412X-HTZ_GMP_Cell49

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell49-H9


title: control-13yrs-F-Cell22

description:
G_F28_93Cell_22_USPD16100593-AK1858-AK427_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell36

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell36-E7


title: Gfi1-R412X-HTZ_GMP_Cell7

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell7-A2


title: Gfi1-R412X-HTZ_GMP_Cell14

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell14-B3


title: control-13yrs-F-Cell20

description:
G_F28_93Cell_20_USPD16100593-AK1585-AK394_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell2

description:
G_F28_93Cell_2_USPD16100593-AK1581-AK414_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell21

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell21-G4


title: control-13yrs-F-Cell18

description:
G_F28_93Cell_18_USPD16100593-AK1583-AK414_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell35

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell35-D7


title: control-13yrs-F-Cell16

description:
G_F28_93Cell_16_USPD16100593-AK1859-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell42

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell42-G8


title: Gfi1-R412X-HTZ_GMP_Cell28

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell28-C6


title: Gfi1-R412X-HTZ_GMP_Cell41

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell41-F8


title: control-13yrs-F-Cell15

description:
G_F28_93Cell_15_USPD16100593-AK1858-AK425_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell31

description:
G_F28_93Cell_31_USPD16100593-AK1860-AK425_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell6

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell6-H1


title: control-13yrs-F-Cell17

description:
G_F28_93Cell_17_USPD16100593-AK1582-AK415_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell27

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell27-H5


title: Gfi1-R412X-HTZ_GMP_Cell20

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell20-F4


title: Gfi1-R412X-HTZ_GMP_Cell13

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell13-H2


title: control-13yrs-F-Cell11

description:
G_F28_93Cell_11_USPD16100593-AK1583-AK413_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell34

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell34-C7


title: control-13yrs-F-Cell10

description:
G_F28_93Cell_10_USPD16100593-AK1582-AK414_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell12

description:
G_F28_93Cell_12_USPD16100593-AK1584-AK394_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell33

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell33-A7


title: control-13yrs-F-Cell1

description:
G_F28_93Cell_1_USPD16100593-AK1579-AK415_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell95

description:
G_F28_113Cell_95_USPD16100593-AK1584-AK425_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell96

description:
G_F28_113Cell_96_USPD16100593-AK1585-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell19

description:
G_F28_93Cell_19_USPD16100593-AK1584-AK413_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell5

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell5-G1


title: Gfi1-R412X-HTZ_GMP_Cell12

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell12-G2


title: Gfi1-R412X-HTZ_GMP_Cell19

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell19-E4


title: control-13yrs-F-Cell92

description:
G_F28_113Cell_92_USPD16100593-AK1581-AK394_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell14

description:
G_F28_93Cell_14_USPD16100593-AK1586-AK427_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell91

description:
G_F28_113Cell_91_USPD16100593-AK1579-AK413_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell25

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell25-D5


title: control-13yrs-F-Cell90

description:
G_F28_113Cell_90_USPD16100593-AK205-AK414_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell11

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell11-F2


title: Gfi1-R412X-HTZ_GMP_Cell4

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell4-E1


title: control-13yrs-F-Cell13

description:
G_F28_93Cell_13_USPD16100593-AK1585-AK419_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell88

description:
G_F28_113Cell_88_USPD16100593-AK1584-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell89

description:
G_F28_113Cell_89_USPD16100593-AK366-AK415_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell17

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell17-F3


title: Gfi1-R412X-HTZ_GMP_Cell64

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell64-G12


title: control-13yrs-F-Cell86

description:
G_F28_113Cell_86_USPD16100593-AK1582-AK427_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell87

description:
G_F28_113Cell_87_USPD16100593-AK1583-AK425_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell3

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell3-D1


title: Gfi1-R412X-HTZ_GMP_Cell18

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell18-C4


title: control-13yrs-F-Cell85

description:
G_F28_113Cell_85_USPD16100593-AK1581-AK419_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell9

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell9-D2


title: control-13yrs-F-Cell84

description:
G_F28_113Cell_84_USPD16100593-AK1579-AK394_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell82

description:
G_F28_113Cell_82_USPD16100593-AK366-AK414_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell94

description:
G_F28_113Cell_94_USPD16100593-AK1583-AK427_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell2

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell2-B1


title: Gfi1-R412X-HTZ_GMP_Cell63

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell63-F12


title: control-13yrs-F-Cell81

description:
G_F28_113Cell_81_USPD16100593-AK1860-AK415_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell1

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell1-A1


title: control-13yrs-F-Cell93

description:
G_F28_113Cell_93_USPD16100593-AK1582-AK419_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell48

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell48-G9


title: control-13yrs-F-Cell80

description:
G_F28_113Cell_80_USPD16100593-AK1583-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell79

description:
G_F28_113Cell_79_USPD16100593-AK1582-AK425_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell55

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell55-H10


title: Gfi1-R412X-HTZ_GMP_Cell62

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell62-C12


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell89

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell89-D8

value: Bone marrow derived CD11b+ GMP-P


title: control-13yrs-F-Cell77

description:
G_F28_113Cell_77_USPD16100593-AK1579-AK419_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell76

description:
G_F28_113Cell_76_USPD16100593-AK205-AK394_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell68

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell68-E4


title: control-13yrs-F-Cell69

description:
G_F28_113Cell_69_USPD16100593-AK205-AK419_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP_Cell10

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell10-E2


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell60

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell60-B3


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell61

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell61-C3


title: control-13yrs-F-Cell72

description:
G_F28_113Cell_72_USPD16100593-AK1582-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell75

description:
G_F28_113Cell_75_USPD16100593-AK366-AK413_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell70

description:
G_F28_113Cell_70_USPD16100593-AK1579-AK427_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell54

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell54-H1


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell82

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell82-D7


title: control-13yrs-F-Cell68

description:
G_F28_113Cell_68_USPD16100593-AK366-AK394_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell71

description:
G_F28_113Cell_71_USPD16100593-AK1581-AK425_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell74

description:
G_F28_113Cell_74_USPD16100593-AK1860-AK414_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell81

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell81-C7


title: control-13yrs-F-Cell83

description:
G_F28_113Cell_83_USPD16100593-AK205-AK413_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell53

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell53-F1


title: control-13yrs-F-Cell67

description:
G_F28_113Cell_67_USPD16100593-AK1860-AK413_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell67

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell67-D4


title: control-13yrs-F-Cell78

description:
G_F28_113Cell_78_USPD16100593-AK1581-AK427_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell66

description:
G_F28_113Cell_66_USPD16100593-AK1859-AK414_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell73

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell73-E5


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell52

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell52-E1


title: control-13yrs-F-Cell65

description:
G_F28_113Cell_65_USPD16100593-AK1858-AK415_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell73

description:
G_F28_113Cell_73_USPD16100593-AK1859-AK415_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-13yrs-F-Cell64

description:
G_F28_113Cell_64_USPD16100593-AK1581-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell75

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell75-A6


title: control-13yrs-F-Cell63

description:
G_F28_113Cell_63_USPD16100593-AK1579-AK425_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell8

description:
G_F11_94Cell_8_USPD16100593-N710-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: 10 year old


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell74

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell74-F5


title: control-10yrs-F-Cell61

description:
G_F11_94Cell_61_USPD16100593-AK1568-AK419_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell50

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell50-B1


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell95

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell95-A10


title: control-10yrs-F-Cell63

description:
G_F11_94Cell_63_USPD16100593-N701-AK425_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell60

description:
G_F11_94Cell_60_USPD16100593-N712-AK394_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell65

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell65-B4


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell96

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell96-B10


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell49

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell49-A1


title: control-10yrs-F-Cell59

description:
G_F11_94Cell_59_USPD16100593-N711-AK413_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell80

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell80-H6


title: control-10yrs-F-Cell6

description:
G_F11_94Cell_6_USPD16100593-N706-AK427_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell87

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell87-B8


title: control-10yrs-F-Cell58

description:
G_F11_94Cell_58_USPD16100593-N710-AK414_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell72

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell72-D5


title: control-10yrs-F-Cell57

description:
G_F11_94Cell_57_USPD16100593-N707-AK415_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell59

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell59-G2


title: control-10yrs-F-Cell64

description:
G_F11_94Cell_64_USPD16100593-N702-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell66

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell66-C4


title: control-10yrs-F-Cell7

description:
G_F11_94Cell_7_USPD16100593-N707-AK425_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell56

description:
G_F11_94Cell_56_USPD16100593-N701-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell62

description:
G_F11_94Cell_62_USPD16100593-AK1572-AK427_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell55

description:
G_F11_94Cell_55_USPD16100593-AK1572-AK425_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell53

description:
G_F11_94Cell_53_USPD16100593-N712-AK419_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell52

description:
G_F11_94Cell_52_USPD16100593-N711-AK394_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell78

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell78-D6


title: control-10yrs-F-Cell51

description:
G_F11_94Cell_51_USPD16100593-N710-AK413_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell54

description:
G_F11_94Cell_54_USPD16100593-AK1568-AK427_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell64

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell64-A4


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell79

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell79-G6


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell93

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell93-F9


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell85

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell85-G7


title: control-10yrs-F-Cell49

description:
G_F11_94Cell_49_USPD16100593-N706-AK415_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell56

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell56-B2


title: control-10yrs-F-Cell50

description:
G_F11_94Cell_50_USPD16100593-N707-AK414_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell92

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell92-D9


title: control-10yrs-F-Cell5

description:
G_F11_94Cell_5_USPD16100593-N705-AK419_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell48

description:
G_F11_94Cell_48_USPD16100593-N707-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell47

description:
G_F11_94Cell_47_USPD16100593-N706-AK425_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell86

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell86-H7


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell77

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell77-C6


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell70

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell70-G4


title: control-10yrs-F-Cell45

description:
G_F11_94Cell_45_USPD16100593-N704-AK419_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell44

description:
G_F11_94Cell_44_USPD16100593-N703-AK394_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell69

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell69-F4


title: control-10yrs-F-Cell42

description:
G_F11_94Cell_42_USPD16100593-N701-AK414_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell43

description:
G_F11_94Cell_43_USPD16100593-N702-AK413_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell55

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell55-A2


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell62

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell62-D3


title: control-10yrs-F-Cell41

description:
G_F11_94Cell_41_USPD16100593-AK1572-AK415_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell40

description:
G_F11_94Cell_40_USPD16100593-AK1572-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell4

description:
G_F11_94Cell_4_USPD16100593-N704-AK394_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell83

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell83-E7


title: control-10yrs-F-Cell39

description:
G_F11_94Cell_39_USPD16100593-AK1568-AK425_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell90

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell90-E8


title: control-10yrs-F-Cell38

description:
G_F11_94Cell_38_USPD16100593-N712-AK427_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell37

description:
G_F11_94Cell_37_USPD16100593-N711-AK419_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell91

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell91-F8


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell55

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_55

data_processing:
RNA reads were aligned to the reference mm9 mouse genome using Bowtie2.
Single-cell RNA-Seq data were analyzed using RSEM to estimate transcripts per million mapped reads (TPM) for all genes.
Genome_build: mm9
Supplementary_files_format_and_content: [exp.R412X-HMZ.txt]  Tab-delimited text file of log2 (incremented by 1 before log2) TPM RSEM expression values
Supplementary_files_format_and_content: [groups.R412X-HMZ.txt]  Group annotations assigned by cellHarmony


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell62

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_62


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell69

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_69


title: control-10yrs-F-Cell35

description:
G_F11_94Cell_35_USPD16100593-N707-AK413_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell83

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_83


title: control-10yrs-F-Cell36

description:
G_F11_94Cell_36_USPD16100593-N710-AK394_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell90

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_90


title: control-10yrs-F-Cell33

description:
G_F11_94Cell_33_USPD16100593-N705-AK415_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell89

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_89


title: Gfi1-R412X-HTZ_GMP_Cell26

description:
Gfi1-R412X-HTZ GMP
R412X-GMP_Cell26-E5


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell54

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_54


title: control-10yrs-F-Cell30

description:
G_F11_94Cell_30_USPD16100593-N711-AK427_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell68

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_68


title: control-10yrs-F-Cell3

description:
G_F11_94Cell_3_USPD16100593-N703-AK413_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell75

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_75


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell82

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_82


title: control-10yrs-F-Cell29

description:
G_F11_94Cell_29_USPD16100593-N710-AK419_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell27

description:
G_F11_94Cell_27_USPD16100593-N706-AK413_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell81

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_81


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell53

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_53


title: control-10yrs-F-Cell32

description:
G_F11_94Cell_32_USPD16100593-AK1568-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell25

description:
G_F11_94Cell_25_USPD16100593-N704-AK415_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell26

description:
G_F11_94Cell_26_USPD16100593-N705-AK414_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell34

description:
G_F11_94Cell_34_USPD16100593-N706-AK414_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell67

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_67


title: control-10yrs-F-Cell24

description:
G_F11_94Cell_24_USPD16100593-N712-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell61

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_61


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell74

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_74


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell73

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_73


title: control-10yrs-F-Cell23

description:
G_F11_94Cell_23_USPD16100593-N711-AK425_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell22

description:
G_F11_94Cell_22_USPD16100593-N710-AK427_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell52

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_52


title: control-10yrs-F-Cell21

description:
G_F11_94Cell_21_USPD16100593-N707-AK419_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell66

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_66


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell59

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_59


title: control-10yrs-F-Cell18

description:
G_F11_94Cell_18_USPD16100593-N704-AK414_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell65

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_65


title: control-10yrs-F-Cell20

description:
G_F11_94Cell_20_USPD16100593-N706-AK394_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell58

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_58


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell51

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_51


title: control-10yrs-F-Cell17

description:
G_F11_94Cell_17_USPD16100593-N703-AK415_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell84

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell84-F7


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell57

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_57


title: control-10yrs-F-Cell15

description:
G_F11_94Cell_15_USPD16100593-N710-AK425_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell14

description:
G_F11_94Cell_14_USPD16100593-N707-AK427_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell49

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_49


title: control-10yrs-F-Cell19

description:
G_F11_94Cell_19_USPD16100593-N705-AK413_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell88

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_88


title: control-10yrs-F-Cell12

description:
G_F11_94Cell_12_USPD16100593-N705-AK394_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell11

description:
G_F11_94Cell_11_USPD16100593-N704-AK413_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell80

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_80


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell76

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_76


title: control-10yrs-F-Cell10

description:
G_F11_94Cell_10_USPD16100593-N703-AK414_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell87

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_87


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell94

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_94


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell95

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_95


title: control-10yrs-F-Cell1

description:
G_F11_94Cell_1_USPD16100593-N701-AK415_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell46

description:
G_F11_94Cell_46_USPD16100593-N705-AK427_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell96

description:
G_F11_40Cell_96_USPD16100593-N706-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell13

description:
G_F11_94Cell_13_USPD16100593-N706-AK419_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell28

description:
G_F11_94Cell_28_USPD16100593-N707-AK394_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell95

description:
G_F11_40Cell_95_USPD16100593-N705-AK425_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell96

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_96


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell94

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell94-G9


title: control-13yrs-F-Cell38

description:
G_F28_93Cell_38_USPD16100593-AK1860-AK427_H2W2YBBXX_L8_1
Neutrophils from a 13 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell72

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_72


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell79

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_79


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell71

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell71-A5


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell86

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_86


title: control-10yrs-F-Cell94

description:
G_F11_40Cell_94_USPD16100593-N704-AK427_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell64

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_64


title: control-10yrs-F-Cell92

description:
G_F11_40Cell_92_USPD16100593-N702-AK394_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell93

description:
G_F11_40Cell_93_USPD16100593-N703-AK419_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell76

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell76-B6


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell93

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_93


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell71

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_71


title: control-10yrs-F-Cell91

description:
G_F11_40Cell_91_USPD16100593-N701-AK413_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell90

description:
G_F11_40Cell_90_USPD16100593-AK1572-AK414_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell78

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_78


title: control-10yrs-F-Cell88

description:
G_F11_40Cell_88_USPD16100593-N705-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell88

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell88-C8


title: control-10yrs-F-Cell89

description:
G_F11_40Cell_89_USPD16100593-AK1568-AK415_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell92

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_92


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell85

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_85


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell56

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_56


title: control-10yrs-F-Cell87

description:
G_F11_40Cell_87_USPD16100593-N704-AK425_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell2

description:
G_F11_94Cell_2_USPD16100593-N702-AK414_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell85

description:
G_F11_40Cell_85_USPD16100593-N702-AK419_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell60

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_60


title: control-10yrs-F-Cell83

description:
G_F11_40Cell_83_USPD16100593-AK1572-AK413_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell70

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_70


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell77

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_77


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell91

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_91


title: control-10yrs-F-Cell84

description:
G_F11_40Cell_84_USPD16100593-N701-AK394_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell63

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_63


title: control-10yrs-F-Cell82

description:
G_F11_40Cell_82_USPD16100593-AK1568-AK414_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP-P-CD11b+_Cell50

description:
Gfi1-R412X-HMZ CD11b+ GMP-P
Mar12_x_x_309_Cell_50


title: Gfi1-R412X-HMZ_GMP_Cell41

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_41


title: control-10yrs-F-Cell81

description:
G_F11_40Cell_81_USPD16100593-N712-AK415_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell32

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_32


title: control-10yrs-F-Cell80

description:
G_F11_40Cell_80_USPD16100593-N704-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell57

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell57-D2


title: control-10yrs-F-Cell79

description:
G_F11_40Cell_79_USPD16100593-N703-AK425_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell86

description:
G_F11_40Cell_86_USPD16100593-N703-AK427_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell39

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_39


title: Gfi1-R412X-HMZ_GMP_Cell40

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_40


title: Gfi1-R412X-HMZ_GMP_Cell24

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_24


title: control-10yrs-F-Cell77

description:
G_F11_40Cell_77_USPD16100593-N701-AK419_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell78

description:
G_F11_40Cell_78_USPD16100593-N702-AK427_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell31

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_31


title: control-10yrs-F-Cell75

description:
G_F11_40Cell_75_USPD16100593-AK1568-AK413_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell38

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_38


title: control-10yrs-F-Cell76

description:
G_F11_40Cell_76_USPD16100593-AK1572-AK394_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell23

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_23


title: control-10yrs-F-Cell74

description:
G_F11_40Cell_74_USPD16100593-N712-AK414_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell30

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_30


title: control-10yrs-F-Cell73

description:
G_F11_40Cell_73_USPD16100593-N711-AK415_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell37

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_37


title: control-10yrs-F-Cell72

description:
G_F11_40Cell_72_USPD16100593-N703-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell71

description:
G_F11_40Cell_71_USPD16100593-N702-AK425_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell15

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_15


title: Gfi1-R412X-HTZ_GMP-P-CD11b+_Cell63

description:
Gfi1-R412X-HTZ CD11b+ GMP-P
073117_Cell63-E3


title: control-10yrs-F-Cell9

description:
G_F11_94Cell_9_USPD16100593-N702-AK415_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell70

description:
G_F11_40Cell_70_USPD16100593-N701-AK427_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell31

description:
G_F11_94Cell_31_USPD16100593-N712-AK425_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell29

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_29


title: Gfi1-R412X-HMZ_GMP_Cell36

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_36


title: control-10yrs-F-Cell68

description:
G_F11_40Cell_68_USPD16100593-AK1568-AK394_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell48

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_48


title: control-10yrs-F-Cell67

description:
G_F11_40Cell_67_USPD16100593-N712-AK413_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell14

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_14


title: Gfi1-R412X-HMZ_GMP_Cell21

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_21


title: SCN-14yrs-F-Cell96

description:
G_D12_39Cell_96_USPD16100592-N706-AK403_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: 14 year old


title: control-10yrs-F-Cell65

description:
G_F11_40Cell_65_USPD16100593-N710-AK415_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell28

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_28


title: Gfi1-R412X-HMZ_GMP_Cell35

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_35


title: Gfi1-R412X-HMZ_GMP_Cell47

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_47


title: SCN-14yrs-F-Cell95

description:
G_D12_39Cell_95_USPD16100592-N705-AK402_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell94

description:
G_D12_39Cell_94_USPD16100592-N704-AK428_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell8

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_8


title: Gfi1-R412X-HMZ_GMP_Cell6

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_6


title: SCN-14yrs-F-Cell93

description:
G_D12_39Cell_93_USPD16100592-N703-AK400_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell13

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_13


title: SCN-14yrs-F-Cell92

description:
G_D12_39Cell_92_USPD16100592-N702-AK392_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell91

description:
G_D12_39Cell_91_USPD16100592-N701-AK391_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell16

description:
G_F11_94Cell_16_USPD16100593-N711-AK4261_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: control-10yrs-F-Cell69

description:
G_F11_40Cell_69_USPD16100593-AK1572-AK419_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell90

description:
G_D12_39Cell_90_USPD16100592-N712-AK390_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell27

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_27


title: SCN-14yrs-F-Cell89

description:
G_D12_39Cell_89_USPD16100592-N711-AK394_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell34

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_34


title: Gfi1-R412X-HMZ_GMP_Cell33

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_33


title: control-10yrs-F-Cell66

description:
G_F11_40Cell_66_USPD16100593-N711-AK414_H2W2YBBXX_L8_1
Neutrophils from a 10 year old female healthy donor
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell88

description:
G_D12_39Cell_88_USPD16100592-N705-AK403_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell5

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_5


title: SCN-14yrs-F-Cell86

description:
G_D12_39Cell_86_USPD16100592-N703-AK428_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell19

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_19


title: Gfi1-R412X-HMZ_GMP_Cell12

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_12


title: SCN-14yrs-F-Cell85

description:
G_D12_39Cell_85_USPD16100592-N702-AK400_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell26

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_26


title: SCN-14yrs-F-Cell83

description:
G_D12_39Cell_83_USPD16100592-N712-AK391_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell20

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_20


title: Gfi1-R412X-HMZ_GMP_Cell25

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_25


title: SCN-14yrs-F-Cell84

description:
G_D12_39Cell_84_USPD16100592-N701-AK392_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell82

description:
G_D12_39Cell_82_USPD16100592-N711-AK390_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell45

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_45


title: SCN-14yrs-F-Cell87

description:
G_D12_39Cell_87_USPD16100592-N704-AK402_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell4

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_4


title: SCN-14yrs-F-Cell81

description:
G_D12_39Cell_81_USPD16100592-N710-AK394_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell46

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_46


title: SCN-14yrs-F-Cell80

description:
G_D12_39Cell_80_USPD16100592-N704-AK403_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell11

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_11


title: SCN-14yrs-F-Cell79

description:
G_D12_39Cell_79_USPD16100592-N703-AK402_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell18

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_18


title: SCN-14yrs-F-Cell78

description:
G_D12_39Cell_78_USPD16100592-N702-AK428_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell17

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_17


title: SCN-14yrs-F-Cell77

description:
G_D12_39Cell_77_USPD16100592-N701-AK400_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell44

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_44


title: Gfi1-R412X-HMZ_GMP_Cell3

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_3


title: SCN-14yrs-F-Cell76

description:
G_D12_39Cell_76_USPD16100592-N712-AK392_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell75

description:
G_D12_39Cell_75_USPD16100592-N711-AK391_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell74

description:
G_D12_39Cell_74_USPD16100592-N710-AK390_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell72

description:
G_D12_39Cell_72_USPD16100592-N703-AK403_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell10

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_10


title: Gfi1-R412X-HMZ_GMP_Cell43

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_43


title: Gfi1-R412X-HMZ_GMP_Cell2

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_2


title: SCN-14yrs-F-Cell69

description:
G_D12_39Cell_69_USPD16100592-N712-AK400_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell68

description:
G_D12_39Cell_68_USPD16100592-N711-AK392_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell67

description:
G_D12_39Cell_67_USPD16100592-N710-AK391_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell42

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_42


title: SCN-14yrs-F-Cell66

description:
G_D12_39Cell_66_USPD16100592-N709-AK390_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: ago1-42_epi_rep3

city: Zürich

first: Alexis

last: Sarazin

address: Universitätstrasse 2

country: Switzerland

institute: ETH

data_processing:
Illumina Casava1.8 software was use for basecalling.
FASTQ file generation and demultiplexing was done by the Functional Genomic Center Zurich.
Adaptors sequence removal using fastx_clipper from fastx-toolkit with parameters -a TGGAATTCTCGGGTG -l 15 -c -Q 33. Small RNA readswere filtered to 17-30nt long reads for analysis. Reads with identical sequence were grouped using the processReads function from the ncPRO-seq pipeline and aligned against A.thaliana’s genome (TAIR10) using bowtie2 (options : -k 100 --score-min L,0,0)
Genome_build: TAIR10
Supplementary_files_format_and_content: For each sample, tab-delimited text files including distinct sequences and reads count values.

organism: Arabidopsis thaliana

source_name: epidermis

growth_protocol: Plants were grown in soil under 12:12 light:dark conditions

extract_protocol:
Total cellular RNA was extracted using TRIzol reagent (Invitrogene)
Extracted RNA processed into sequencing libraries using Lexogen Small RNA-Seq Library Prep Kit after gel based size selection and sequenced at the Functional Genomic Center Zurich (http://www.fgcz.ch) using the Illumina HiSeq sequencer.

tag: strain and genotype

value: Columbia-0 ago1-42

tag: tissue

value: epidermis

tag: development stage

value: 6-8 weeks old rosettes


title: ago1-42_vasc_rep3

source_name: vasculature

value: vasculature


title: ago1-42_epi_rep2


title: SCN-14yrs-F-Cell65

description:
G_D12_39Cell_65_USPD16100592-N708-AK394_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: Nextera XT DNA Library Preparation Kit (Illumina)


title: SCN-14yrs-F-Cell62

description:
G_D12_39Cell_62_USPD16100592-N712-AK428_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: Peripheral blood neutrophils


title: Gfi1-R412X-HMZ_GMP_Cell9

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_9

value: Bone marrow derived GMP

value: Fluidigm C1 protocol

value: 150bp Paired-End, 150 million reads/96 cell library


title: SCN-14yrs-F-Cell64

description:
G_D12_39Cell_64_USPD16100592-N702-AK403_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: Fluidigm C1 protocol (v4 chemistry)

value: 75bp Paired-End, 150 million reads/96 cell library


title: ago1-42_vasc_rep1


title: SCN-14yrs-F-Cell61

description:
G_D12_39Cell_61_USPD16100592-N711-AK400_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: with Severe Congenital Neutropenia


title: ago1-42_epi_rep1


title: ago1-18_epi_rep3


title: ago1-18_epi_rep2

value: Columbia-0 ago1-18


title: SCN-14yrs-F-Cell71

description:
G_D12_39Cell_71_USPD16100592-N702-AK402_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: female


title: ago1-18_vasc_rep3


title: SCN-14yrs-F-Cell59

description:
G_D12_39Cell_59_USPD16100592-N709-AK391_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell60

description:
G_D12_39Cell_60_USPD16100592-N710-AK392_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell57

description:
G_D12_39Cell_57_USPD16100592-N707-AK394_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Gfi1-R412X-HMZ_GMP_Cell1

description:
Gfi1-R412X-HMZ GMP
Mar27_x_x_308_Cell_1


title: SCN-14yrs-F-Cell63

description:
G_D12_39Cell_63_USPD16100592-N701-AK402_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell56

description:
G_D12_39Cell_56_USPD16100592-N701-AK403_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell58

description:
G_D12_39Cell_58_USPD16100592-N708-AK390_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: ago1-18_vasc_rep1


title: ago1-18_vasc_rep2


title: SCN-14yrs-F-Cell9

description:
G_D12_38Cell_9_USPD16100592-N702-AK394_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: ago1-18_epi_rep1


title: Col0_epi_rep3

value: 4-5 weeks old rosettes


title: Col0_vasc_rep3

value: Columbia-0 wild type


title: Col0_vasc_rep2


title: SCN-14yrs-F-Cell54

description:
G_D12_38Cell_54_USPD16100592-N711-AK428_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: 14 year old


title: SCN-14yrs-F-Cell53

description:
G_D12_38Cell_53_USPD16100592-N710-AK400_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: ago1-42_vasc_rep2

value: Columbia-0 ago1-42


title: SCN-14yrs-F-Cell8

description:
G_D12_38Cell_8_USPD16100592-N708-AK403_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell6

description:
G_D12_38Cell_6_USPD16100592-N706-AK428_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Col0_epi_rep1

value: epidermis


title: SS_WER_P19-Input

data_processing:
Basecalling pipeline for SS samples : HiSeq Control Software 2.2.38 ; RTA 1.18.61.0 ; CASAVA-1.8.2. Basecalling pipeline for TuYV samples : HiSeq Control Software 3.3.76 ; RTA 2.7.6 ; bcl2fastq2.17 v2.17.1.14
FASTQ file generation and demultiplexing and adapter removal was done by Fasteris.
Small RNA reads were filtered to 17-30nt long reads for analysis. Reads with identical sequence were grouped using the processReads function from the ncPRO-seq pipeline and aligned against A.thaliana’s genome (TAIR10) using bowtie2 (options : -k 100 --score-min L,0,0). For sRNA libraries from plants containing SucSUL transgene or infected by TuYV, the transgene or the virus sequences were included in the bowtie2 index as extra-chromosome.
Genome_build: TAIR10
Supplementary_files_format_and_content: For each sample, tab-delimited text files including distinct sequences and reads count values.

source_name: roots

growth_protocol: Plants were grown vertically on 0.5x MS media containing BASTA and covered with a mesh (Sefear Nitrex 03-65125) under continious light

extract_protocol:
Total RNA and P19 bound sRNA isolations were done using Tri-Reagent or equivalents and CHCl3 according the manufacturer’s instructions. 0.5 µl Glycogen (Thermo Fisher Scientific, Waltham, MA) and an aliquot (1:10 of the total water phase volume) of 5 M potassium acetate pH 5.6 was added and RNA was precipitated on ice by adding 1 volume of isopropanol for 1 hour. The pelleted RNA was washed twice with ice cold 80% (v/v) Ethanol, resuspended in ultrapure H2O or 50% (v/v) formamide containing LMW loading buffer for total RNA or IP’s, respectively
Extracted RNA was processed into sequencing libraries using adapted Illumina protocols and sequenced at Fasteris (http://www.fasteris.com, Switzerland) using the Illumina HiSeq sequencer

tag: ecotype

value: pSuc2:SucSUL and pWER:Flag-HA-P19 transgenes

value: roots

value: Primary root system 1 week after germination


title: Col0_epi_rep2


title: SCN-14yrs-F-Cell55

description:
G_D12_38Cell_55_USPD16100592-N712-AK402_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: Peripheral blood neutrophils

value: Nextera XT DNA Library Preparation Kit (Illumina)


title: SCN-14yrs-F-Cell5

description:
G_D12_38Cell_5_USPD16100592-N705-AK400_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: Col0_vasc_rep1

value: vasculature


title: SCN-14yrs-F-Cell7

description:
G_D12_38Cell_7_USPD16100592-N707-AK402_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SS_SHR_P19-Input

value: pSuc2:SucSUL and pSHR:Flag-HA-P19 transgenes


title: SS_SHR_P19-IP

description: Immunoprecipitated RNA


title: SCN-14yrs-F-Cell45

description:
G_D12_38Cell_45_USPD16100592-N704-AK400_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: Fluidigm C1 protocol (v4 chemistry)


title: SS_WER_P19-IP

description: Immunoprecipitated RNA


title: SCN-14yrs-F-Cell49

description:
G_D12_38Cell_49_USPD16100592-N706-AK394_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: 75bp Paired-End, 150 million reads/96 cell library


title: SCN-14yrs-F-Cell47

description:
G_D12_38Cell_47_USPD16100592-N706-AK402_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: with Severe Congenital Neutropenia


title: sRNA_epi_rep1

data_processing:
Basecalling pipeline: HiSeq Control Software 2.2.58 ; RTA 1.18.64.0 ; CASAVA-1.8.2
small RNA FASTQ file generation, demultiplexing and adapter removal was done by Fasteris.
Small RNA reads were filtered to 17-30nt long reads for analysis. Reads with identical sequence were grouped using the processReads function from the ncPRO-seq pipeline and aligned against A.thaliana’s genome (TAIR10) using bowtie2 (options : -k 100 --score-min L,0,0)
mRNA FASTQ file generation and demultiplexing was done by Fasteris.
Reads were timmed using Trimmomatic (v0.36) with parameters ILLUMINACLIP:TruSeq2-PE.fa:2:30:10 SLIDINGWINDOW:4:15 MINLEN:50
Mapping to Arabidopsis genome (TAIR10) with Tophat (v2.0.11)  and Bowtie2 (v2.2.1.0)
Reads count with the featureCounts function from the Subread package with options -S rf -p -s 1 -C -B -O
Genome_build: TAIR10
Supplementary_files_format_and_content: Tab-delimited text files including distinct sequences and reads count values.
Supplementary_files_format_and_content: Tab delimited text files of fragments count

extract_protocol:
Total cellular RNA was extracted using TRIzol reagent (Invitrogene)
Extracted RNA was processed into sequencing libraries using adapted Illumina protocols and sequenced at Fasteris (http://www.fasteris.com, Switzerland) using the Illumina HiSeq sequencer

value: wild type


title: RNA_epi_ir71_rep2

value: ir71 mutant


title: SCN-14yrs-F-Cell44

description:
G_D12_38Cell_44_USPD16100592-N703-AK392_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: female


title: sRNA_epi_rep2

value: 4-5 weeks old rosettes


title: SCN-14yrs-F-Cell43

description:
G_D12_38Cell_43_USPD16100592-N702-AK391_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: 14 year old


title: SCN-14yrs-F-Cell50

description:
G_D12_38Cell_50_USPD16100592-N707-AK390_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: sRNA_vasc_rep2


title: CWC27-3

city: Paris

first: Herve

last: Le Hir

address: 46, Rue d’Ulm

country: France

institute: IBENS

data_processing:
After trimming of the adapters using cutadapt, the reads were mapped on hg38 (Gencode GRCh38.p12.genome.fa) using STAR (version 20201)  with default parameters  and adding the -quantMode GeneCounts option to generate gene count files. Gencode hg38 V29 gtf annotations were used.
For differential expression, DESeq2 was run on gene counts (from STAR) of controls vs CWC22 or CWC27 siRNA triplicates with default parameters.
Genome_build: hg38
Supplementary_files_format_and_content: Differential expression DESeq2 outputs : CWC22-deseq2.tabular and CWC27-deseq2.tabular

source_name: retinal pigment epithelium cells

growth_protocol: hTERT-RPE-1 cells were propagated at 37°C in a humidified 5% CO 2 atmosphere in DMEM/F-12 GlutaMAX medium (31331-028, Life Technologies) supplemented with 10% FBS and 100 U/mL Penicillin-Streptomycin 1X (Life Technologies). HeLa and hTERT-RPE-1 cells were genotyped by Eurofins Forensik and routinely tested for mycoplasma by PCR.

extract_protocol:
48 hours after transfection, RNAs were extracted using Monarch Total RNA Miniprep Kit (New England Biolabs)
RNA-seq was performed by Fasteris on paired-end libraries (stranded mRNA) run on Illumina HiSeq using 2x150 bp.

treatment_protocol: For mRNA-seq, h-TERT RPE-1 cells were transfected at 60-70% confluency with 9 μl of Lipofectamine and 1.5 μl of 20 μM DsiRNAs (Integrated DNA Technologies) CWC27, CWC22 or control. A mix of 2 different DsiRNA targeting different regions of the CWC27 and CWC22 genes was used. Transfections for replicates were performed independently.

value: h-TERT RPE-1

tag: treatment

value: CWC27 DsiRNA


title: SCN-14yrs-F-Cell46

description:
G_D12_38Cell_46_USPD16100592-N705-AK428_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell42

description:
G_D12_38Cell_42_USPD16100592-N701-AK390_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell52

description:
G_D12_38Cell_52_USPD16100592-N709-AK392_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: SCN-14yrs-F-Cell48

description:
G_D12_38Cell_48_USPD16100592-N707-AK403_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: sRNA_vasc_rep1


title: CWC27-2


title: CWC22-2

value: CWC22 DsiRNA


title: SCN-14yrs-F-Cell41

description:
G_D12_38Cell_41_USPD16100592-N712-AK394_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs


title: CWC22-3


title: RNA_epi_ir71_rep1

value: epidermis


title: Ctrl-2

value: control DsiRNA


title: SCN-14yrs-F-Cell40

description:
G_D12_38Cell_40_USPD16100592-N712-AK403_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: Peripheral blood neutrophils


title: Ctrl-1


title: SCN-14yrs-F-Cell4

description:
G_D12_38Cell_4_USPD16100592-N704-AK392_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: Nextera XT DNA Library Preparation Kit (Illumina)


title: Ctrl-3


title: HUVECs, HV-4

city: Wuhan

first: LI

last: LI

address: 185 Donghu Road

country: China

institute: wuhan university school of basic medical sciences

description:
lncRNA-exp.txt
new_lncRNA-exp.txt
mRNA-exp.txt

data_processing:
Illumina Bcl2FastQ  software used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence. The remaining reads were filtered against the rRNA database to remove possible ribosomal RNA contamination,  and then mapped to the hg19 whole genome using Hisat2 v2.1.0 with default parameters.
Reads Per Kilobase of exon per Megabase of library size (RPKM) were calculated using a protocol from Chepelev et al., Nucleic Acids Research, 2009. In short, exons from all isoforms of a gene were merged to create one meta-transcript. The number of reads falling in the exons of this meta-transcript were counted and normalized by the size of the meta-transcript and by the size of the library.
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files include RPKM values and counts for each Sample

source_name: human umbilical vein endothelial cells

growth_protocol: HUVECs were purchased from ScienCell Research Laboratories (Cat No: 8000, Carlsbad, USA) and cultured in ECM Medium with 5% fetal bovine serum (FBS), 1% penicillin-streptomycin and endothelial cell growth supplement (ECGS) (ScienCell) at 37°C in 5% CO2.

extract_protocol:
Total RNA from mock and HTNV-infected HUVECs was isolated with TRIzol reagent (Invitrogen, USA).
rRNAs were removed from Total RNA using Epicentre Ribo-Zero rRNA Removal Kit (illumina, USA) and fragmented to approximately 200bp. Subsequently, the purified  RNAs were subjected to first strand and second strand cDNA synthesis following by adaptor ligation and enrichment with a low-cycle according to instructions of NEBNext® Ultra™ RNA Library Prep Kit for Illumina (NEB, USA).

treatment_protocol: HUVECs were mock-infected or HTNV-infected at a multiplicity of infection (MOI) of 1.

value: umbilical cord

value: human umbilical vein endothelial cells

tag: infection

value: HTNV infected


title: CWC22-1


title: Col/SS shoot

description: Grafted plants are described using “shoot/root” notation

data_processing:
Basecalling pipeline: HiSeq Control Software 2.2.38 ; RTA 1.18.61.0 ; CASAVA-1.8.2
FASTQ file generation and demultiplexing and adapter removal was done by Fasteris.
Small RNA reads were filtered to 17-30nt long reads for analysis. Reads with identical sequence were grouped using the processReads function from the ncPRO-seq pipeline and aligned against A.thaliana’s genome (TAIR10) using bowtie2 (options : -k 100 --score-min L,0,0). The sequence from SucSUL transgene was included in the bowtie2 index as extra-chromosome.
Genome_build: TAIR10
Supplementary_files_format_and_content: For each sample, tab-delimited text files including distinct sequences and reads count values.

source_name: shoot

growth_protocol: plants were grown on 1/2 MS plates under continious light

treatment_protocol: Grafting was performed 5-7 days after germinations as describe in Brosnan et al. 2007 and sample were harvested 3 weeks after.

value: Col0 WT

value: shoot

value: 4 weeks old


title: Col/SS root

source_name: root

value: Col0 plant expressing pSuc2:SucSUL

value: root


title: SS/Col root


title: HUVECs, HV-6

value: wild type


title: SS/Col shoot


title: HUVECs, con-5

value: mock infected


title: CWC27-1

value: h-TERT RPE-1


title: HUVECs, HV-2


title: HUVECs, con-4


title: SCN-14yrs-F-Cell38

description:
G_D12_38Cell_38_USPD16100592-N710-AK428_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: Fluidigm C1 protocol (v4 chemistry)

value: 75bp Paired-End, 150 million reads/96 cell library

value: 14 year old

value: female

value: with Severe Congenital Neutropenia


title: SCN-14yrs-F-Cell37

description:
G_D12_38Cell_37_USPD16100592-N709-AK400_H2W2YBBXX_L7_1
Neutrophils from a 14 year old female patient with Severe Congenital Neutropenia
exp.Neutrophils-RSEM-TPMs.txt
donors.Neutrophils-RSEM-TPMs

value: Peripheral blood neutrophils

value: Nextera XT DNA Library Preparation Kit (Illumina)