title: GeCKO-SeV-low IFN

status: Public on Jan 11 2020

city: Philadelphia

first: Tian

last: Tian

address: 3615 Civic Center Blvd

department: Center of Applied Genomics

institute: Children's Hospital of Philadelphia

data_processing:
Raw FASTQ files were demultiplexed using the FASTX-Toolkit (http://hannonlab.  cshl.edu/fastx_toolkit/) and processed to contain only the unique sgRNA sequence. To align the processed reads to the library, the designed sgRNA sequences from the library were assembled  into a Burrows-Wheeler index using the Bowtie build-index function. Reads were then aligned to the index using the Bowtie aligner. After alignment, the number of uniquely aligned reads for each library sequence was calculated.
Genome_build: hg19
Supplementary_files_format_and_content: IFN-high_VS_control.xlsx: Rankings of gene hits according to all sgRNA enrichment by P values of comparing high between control samples.
Supplementary_files_format_and_content: IFN-low_VS_control.xlsx: Rankings of gene hits according to all sgRNA enrichment by P values of comparing low between control samples.

source_name: A549 cells

growth_protocol: A549  cells were maintained in DMEM supplemented with 10% FBS and 1% penicillin/streptomycin.

extract_protocol:
Cells were lysed and genomic DNA was extracted with DNeasy Blood & Tissue Kit from Qiagen (69504).
DNA libraries were prepared for sequencing using standard Illumina protocols

value: Tumor cell line

tag: passages

value: GeCKo


title: GeCKO-SeV-high IFN

type: SRA

state: PA

country: USA

library_source: genomic

molecule: genomic DNA

organism: Homo sapiens

tag: cell type

tag: genotype


title: GeCKO-Control


title: Retina, non-Macula Control SAM18

status: Public on Jan 22 2020

city: South San Francisco

first: Luz

middle: D

last: Orozco

state: CA

address: 1 DNA Way

department: Bioinformatics

institute: Genentech Inc.

library_source: transcriptomic

data_processing: Reads were aligned to the GRCh38 genome using GSNAP and genes were counted using the HTSeqGenie Bioconductor package. Gene models were from our internal database and available in the manuscript supplementary material. "nRPKM" normalization was performed. This is similar to "RPKM" normalization but includes an extra step for sizeFactor adjustment and is described in the Methods of the manuscript. Supplementary files use Ensembl IDs, counts and nRPKM statistics.

molecule: total RNA

source_name: RNA from the cell pellet

extract_protocol: Cells were centrifuged at 2,600 rcf for 7 minutes (neurons) or 6,600 rcf for 7 minutes (other cell types) and the supernatant was discarded. RNA was extracted from the cell pellet using Qiagen RNeasy Plus Micro kit in a final volume of 25 μl. We typically obtained 200-300 ng RNA from neurons, 10-20 ng from microglia, and 2-5 ng from astrocytes. RNA quality was quantified using the Bioanalyzer.

tag: tissue

value: Retina, non-Macula

value: Control

tag: samid

tag: age


title: RPE, non-Macula Control SAM5

value: RPE, non-Macula


title: 131065_PBMC_2

status: Public on Jan 08 2020

type: RNA

city: New Haven

first: Hailong

last: Meng

state: CT

address: 300 George Str

institute: Yale University

description:
200373830123_J
SAMPLE 88

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing: The data were normalised using quantile normalisation with lumi in R

label: biotin

source_name: Young_PBMC_day 2

label_protocol: Preparation of cDNA, cRNA, and labeling were carried out by the Yale Center for Genomic Analysis using the standard Illumina protocols.   Hybridization buffer from the BeadChip kit (Illumina) was mixed with 1500 ng of biotin-labeled cRNA, heated to 65°C for 5 minutes, and then loaded onto the BeadChip.  The BeadChips were sealed in a hybridization chamber and placed in an oven at 58°C with a rocker for 16-20 hours.  After the hybridization, the BeadChips were washed and stained in a series of washes and stains as outlined in the Illumina protocol.  The BeadChips were scanned on the Illumina Iscan.

extract_protocol: Total RNA from PBMC, T Cell, B Cell samples was extracted using the RNeasy mini kit (Qiagen, CA)

tag: subject status

value: Healthy Adults receiving Influenza Vaccination

tag: age group

value: Young

tag: blood draw date

value: after vaccination day 2

value: Peripheral Blood Mononuclear Cells (PBMC)


title: 131075_PBMC_2

description:
200373830127_F
SAMPLE 96


title: 131071_PBMC_2

description:
200373830090_B
SAMPLE 92


title: 131071_PBMC_28

description:
200373830090_D
SAMPLE 94

source_name: Young_PBMC_day 28

value: after vaccination day 28


title: 131064_PBMC_0

description:
200373830117_E
SAMPLE 83

source_name: Young_PBMC_day 0

value: day 0; prior to administration of vaccine


title: 131064_PBMC_2

description:
200373830117_F
SAMPLE 84


title: 131075_PBMC_0

description:
200373830127_E
SAMPLE 95


title: 131071_PBMC_0

description:
200373830090_A
SAMPLE 91


title: 131065_PBMC_7

description:
200373830123_K
SAMPLE 89

source_name: Young_PBMC_day 7

value: after vaccination day 7


title: 131062_PBMC_28

description:
200373830083_L
SAMPLE 78


title: 131063_PBMC_28

description:
200373830108_D
SAMPLE 82


title: 131065_PBMC_28

description:
200373830123_L
SAMPLE 90


title: 131075_PBMC_7

description:
200373830127_G
SAMPLE 97


title: 131075_PBMC_28

description:
200373830127_H
SAMPLE 98


title: 131062_PBMC_7

description:
200373830083_K
SAMPLE 77


title: 131061_PBMC_0

description:
200373830117_I
SAMPLE 71


title: 131065_PBMC_0

description:
200373830123_I
SAMPLE 87


title: 131062_PBMC_2

description:
200373830083_J
SAMPLE 76


title: 131063_PBMC_7

description:
200373830108_C
SAMPLE 81


title: 131071_PBMC_7

description:
200373830090_C
SAMPLE 93


title: 131063_PBMC_0

description:
200373830108_A
SAMPLE 79


title: 131064_PBMC_28

description:
200373830117_H
SAMPLE 86


title: 131062_PBMC_0

description:
200373830083_I
SAMPLE 75


title: 131061_PBMC_7

description:
200373830117_K
SAMPLE 73


title: 131063_PBMC_2

description:
200373830108_B
SAMPLE 80


title: 131061_PBMC_28

description:
200373830117_L
SAMPLE 74

value: after vaccination day 43


title: 131061_PBMC_2

description:
200373830117_J
SAMPLE 72


title: 131064_PBMC_7

description:
200373830117_G
SAMPLE 85


title: 131058_PBMC_28

description:
200373830108_H
SAMPLE 70


title: 131056_PBMC_7

description:
200373830095_C
SAMPLE 65

source_name: Older_PBMC_day 7

value: Older


title: 131058_PBMC_0

description:
200373830108_E
SAMPLE 67


title: 131058_PBMC_2

description:
200373830108_F
SAMPLE 68


title: 131056_PBMC_0

description:
200373830095_A
SAMPLE 63

source_name: Older_PBMC_day 0


title: 131048_PBMC_7

description:
200373830078_G
SAMPLE 53


title: 131050_PBMC_28

description:
200373830129_L
SAMPLE 58


title: 131058_PBMC_7

description:
200373830108_G
SAMPLE 69


title: 131056_PBMC_28

description:
200373830095_D
SAMPLE 66

source_name: Older_PBMC_day 28


title: 131050_PBMC_2

description:
200373830129_J
SAMPLE 56


title: 131053_PBMC_2

description:
200373830127_J
SAMPLE 60


title: 131053_PBMC_7

description:
200373830127_K
SAMPLE 61


title: 131053_PBMC_0

description:
200373830127_I
SAMPLE 59


title: 131056_PBMC_2

description:
200373830095_B
SAMPLE 64

source_name: Older_PBMC_day 2


title: 131050_PBMC_0

description:
200373830129_I
SAMPLE 55


title: 131053_PBMC_28

description:
200373830127_L
SAMPLE 62


title: 131045_PBMC_0

description:
200373830078_I
SAMPLE 47


title: 131044_PBMC_0

description:
200373830095_E
SAMPLE 44


title: 131050_PBMC_7

description:
200373830129_K
SAMPLE 57


title: 131040_PBMC_28

description:
200373830090_L
SAMPLE 43


title: 131048_PBMC_2

description:
200373830078_F
SAMPLE 52


title: 131045_PBMC_28

description:
200373830078_L
SAMPLE 50


title: 131048_PBMC_0

description:
200373830078_E
SAMPLE 51


title: 131048_PBMC_28

description:
200373830078_H
SAMPLE 54


title: 131044_PBMC_2

description:
200373830095_F
SAMPLE 45


title: 131045_PBMC_7

description:
200373830078_J
SAMPLE 48


title: 131045_PBMC_2

description:
200373830078_K
SAMPLE 49


title: RPE, Macula Control SAM27

value: RPE, Macula


title: Retina, non-Macula Control SAM47


title: 131044_PBMC_28

description:
200373830095_H
SAMPLE 46


title: 131040_PBMC_2

description:
200373830090_J
SAMPLE 41


title: 131040_PBMC_7

description:
200373830090_K
SAMPLE 42


title: 131037_PBMC_28

description:
200373830127_D
SAMPLE 35


title: 131038_PBMC_28

description:
200373830090_H
SAMPLE 39


title: 131033_PBMC_28

description:
200373830083_H
SAMPLE 31


title: 131040_PBMC_0

description:
200373830090_I
SAMPLE 40


title: 131038_PBMC_7

description:
200373830090_G
SAMPLE 38


title: 131033_PBMC_0

description:
200373830083_E
SAMPLE 28


title: 131032_PBMC_28

description:
200373830129_H
SAMPLE 27


title: 131038_PBMC_2

description:
200373830090_F
SAMPLE 37


title: 131037_PBMC_2

description:
200373830127_B
SAMPLE 33


title: 131038_PBMC_0

description:
200373830090_E
SAMPLE 36


title: 131022_PBMC_28

description:
200373830123_D
SAMPLE 23


title: 131032_PBMC_2

description:
200373830129_F
SAMPLE 25


title: 131022_PBMC_0

description:
200373830123_A
SAMPLE 20


title: 131022_PBMC_2

description:
200373830123_B
SAMPLE 21


title: 131022_PBMC_7

description:
200373830123_C
SAMPLE 22


title: 131032_PBMC_7

description:
200373830129_G
SAMPLE 26


title: 131037_PBMC_7

description:
200373830127_C
SAMPLE 34


title: 131020_PBMC_0

description:
200373830117_A
SAMPLE 13


title: 131020_PBMC_7

description:
200373830117_C
SAMPLE 15


title: 131033_PBMC_2

description:
200373830083_F
SAMPLE 29


title: 131021_PBMC_28

description:
200373830083_D
SAMPLE 19


title: 131020_PBMC_2

description:
200373830117_B
SAMPLE 14


title: 131033_PBMC_7

description:
200373830083_G
SAMPLE 30


title: 131037_PBMC_0

description:
200373830127_A
SAMPLE 32


title: 131021_PBMC_2

description:
200373830083_B
SAMPLE 18


title: 131020_PBMC_28

description:
200373830117_D
SAMPLE 16


title: 131032_PBMC_0

description:
200373830129_E
SAMPLE 24


title: 131021_PBMC_0

description:
200373830083_A
SAMPLE 17


title: 131019_PBMC_2

description:
200373830078_B
SAMPLE 12


title: 131018_PBMC_28

description:
200373830129_D
SAMPLE 11


title: 131017_PBMC_28

description:
200373830095_L
SAMPLE 7


title: 131018_PBMC_2

description:
200373830129_B
SAMPLE 9


title: 131018_PBMC_7

description:
200373830129_C
SAMPLE 10


title: 131017_PBMC_0

description:
200373830095_I
SAMPLE 4


title: 131017_PBMC_2

description:
200373830095_J
SAMPLE 5


title: 131015_PBMC_28

description:
200373830123_H
SAMPLE 3

source_name: Frail_PBMC_day 28

value: Frail


title: 131017_PBMC_7

description:
200373830095_K
SAMPLE 6


title: 120686_CD8_7

value: YOUNG

tag: phenotype

value: NR


title: 120712_CD8_2

value: R


title: 120685_CD8_7


title: 120712_CD8_28


title: 120712_CD8_9


title: 120685_CD8_2


title: 120686_CD8_0


title: 120686_CD8_2


title: 120683_CD8_28


title: 120683_CD8_0


title: 120685_CD8_0


title: 120712_CD8_0


title: 120676_CD8_7


title: 120676_CD8_2


title: 120686_CD8_28


title: 120683_CD8_7


title: 120683_CD8_2


title: 120685_CD8_28


title: 120676_CD8_28


title: 120674_CD8_2


title: 120674_CD8_7


title: 120672_CD8_2


title: 120673_CD8_28


title: 120676_CD8_0


title: 120672_CD8_0


title: 120672_CD8_28


title: 120674_CD8_28


title: 120674_CD8_0


title: 120673_CD8_0


title: 120656_CD8_7

value: OLD


title: 120673_CD8_7


title: 120671_CD8_0


title: 120671_CD8_28


title: 120672_CD8_7


title: 131015_PBMC_7

description:
200373830123_G
SAMPLE 2

source_name: Frail_PBMC_day 7


title: 120656_CD8_28


title: 120673_CD8_2


title: 120656_CD8_2


title: 120671_CD8_7


title: 120646_CD8_0


title: 120645_CD8_28


title: 120646_CD8_28


title: 120656_CD8_0


title: 120646_CD8_2


title: 120645_CD8_7


title: 120646_CD8_7


title: 131018_PBMC_0

description:
200373830129_A
SAMPLE 8


title: 120645_CD8_2


title: 120635_CD8_7


title: 120637_CD8_28


title: 120639_CD8_2


title: 120637_CD8_0


title: 120634_CD8_2


title: 120639_CD8_28


title: 120633_CD8_28


title: 120645_CD8_0


title: 120637_CD8_7


title: 120633_CD8_2


title: 120639_CD8_0


title: 120631_CD8_0


title: 120629_CD8_28


title: 120634_CD8_28


title: 120634_CD8_0


title: 120633_CD8_0


title: 120634_CD8_8


title: 120629_CD8_2


title: 120635_CD8_2


title: 120631_CD8_7


title: 120631_CD8_28


title: 120639_CD8_7


title: 120637_CD8_2


title: 120633_CD8_7


title: 120629_CD8_7


title: 120635_CD8_28


title: 120635_CD8_0


title: 120629_CD8_0


title: 120618_CD8_7


title: 120618_CD8_28


title: 120686_CD4_28


title: 120712_CD4_2


title: 120712_CD4_28


title: 120712_CD4_0


title: 131015_PBMC_2

description:
200373830123_F
SAMPLE 1

source_name: Frail_PBMC_day 2


title: 120685_CD4_7


title: 120686_CD4_0


title: 120618_CD8_2


title: 120712_CD4_9


title: 120686_CD4_7


title: 120686_CD4_2


title: 120685_CD4_2


title: 120683_CD4_7


title: 120683_CD4_28


title: 120676_CD4_7


title: 120683_CD4_2


title: 120674_CD4_0


title: 120674_CD4_2


title: 120676_CD4_28


title: 120674_CD4_28


title: 120683_CD4_0


title: 120676_CD4_0


title: 120685_CD4_28


title: 120685_CD4_0


title: 120673_CD4_28


title: 120673_CD4_7


title: 120673_CD4_2


title: 120674_CD4_7


title: 120673_CD4_0


title: 120672_CD4_0


title: 120676_CD4_2


title: 120672_CD4_28


title: 120672_CD4_7


title: 120671_CD4_7


title: 120671_CD4_0


title: 120671_CD4_28


title: 120656_CD4_7


title: 120656_CD4_28


title: 120671_CD4_2


title: 120672_CD4_2


title: 120656_CD4_2


title: 120646_CD4_28


title: 120656_CD4_0


title: 120646_CD4_2


title: 120645_CD4_0


title: 120639_CD4_2


title: 120646_CD4_0


title: 120646_CD4_7


title: 120645_CD4_28


title: 120637_CD4_28


title: 120639_CD4_7


title: 120639_CD4_0


title: 120637_CD4_0


title: 120639_CD4_28


title: 120645_CD4_2


title: 120637_CD4_7


title: 120635_CD4_28


title: 120635_CD4_7


title: 120637_CD4_2


title: 120635_CD4_0


title: 120618_CD8_0


title: 120634_CD4_0


title: 120634_CD4_28


title: 120633_CD4_7


title: 120634_CD4_2


title: 120633_CD4_28


title: 120633_CD4_2


title: 120634_CD4_8


title: 120631_CD4_3


title: 120633_CD4_0


title: 120629_CD4_28


title: 120631_CD4_0


title: 120631_CD4_7


title: 120629_CD4_7


title: 120629_CD4_2


title: 120629_CD4_0


title: 120631_CD4_28


title: 120618_CD4_7


title: 120618_CD4_28


title: 120635_CD4_2


title: 120712_B_9

source_name: B


title: 120712_B_0


title: 120712_B_28


title: 120686_B_7


title: 120618_CD4_0


title: 120683_B_28


title: 120686_B_28


title: 120685_B_2


title: 120686_B_2


title: 120676_B_2


title: 120683_B_7


title: 120676_B_7


title: 120673_B_7


title: 120676_B_0


title: 120676_B_28


title: 120618_CD4_2


title: 120683_B_0


title: 120685_B_7


title: 120685_B_0


title: 120683_B_2


title: 120685_B_28


title: 120712_B_2


title: 120686_B_0


title: 120674_B_0


title: 120674_B_2


title: 120674_B_7


title: 120674_B_28


title: 120673_B_2


title: 120673_B_28


title: 120645_CD4_7


title: 120673_B_0


title: 120672_B_7


title: 120671_B_7


title: 120672_B_2


title: 120646_B_28


title: 120646_B_0


title: 120672_B_28


title: 120637_B_2


title: 120671_B_28


title: 120639_B_2


title: 120635_B_2


title: 120645_B_2


title: 120656_B_7


title: 120637_B_7


title: 120635_B_28


title: 120637_B_28


title: 120635_B_7


title: 120645_B_0


title: 120639_B_28


title: 120645_B_28


title: 120639_B_0


title: 120656_B_2


title: 120639_B_7


title: 120656_B_0


title: 120656_B_28


title: 120645_B_7


title: 120646_B_7


title: 120672_B_0


title: 120646_B_2


title: 120635_B_0


title: 120634_B_8


title: 120629_B_28


title: 120629_B_7


title: 120634_B_28


title: 120633_B_2


title: 120633_B_7


title: 120633_B_0


title: 120631_B_3


title: 120629_B_0


title: 120618_B_7


title: 120634_B_2


title: 120618_B_2


title: 120633_B_28


title: 120634_B_0


title: 120631_B_28


title: 120631_B_0


title: 120618_B_0


title: 120629_B_2


title: 120618_B_28


title: 120631_B_7


title: 110283_CD8_28

value: Old


title: 110283_CD8_7


title: 110283_CD8_0


title: 110277_CD8_0


title: 110283_CD8_4


title: 110277_CD8_28


title: 110277_CD8_2


title: 110272_CD8_28


title: 110272_CD8_7


title: 110272_CD8_0


title: 110272_CD8_2


title: 110271_CD8_7


title: 110271_CD8_2


title: 120637_B_0


title: 110271_CD8_0


title: 110270_CD8_0


title: 110268_CD8_24


title: 110270_CD8_32


title: 110268_CD8_7


title: 110277_CD8_7


title: 110271_CD8_28


title: 110270_CD8_2


title: 110270_CD8_7


title: 110267_CD8_0


title: 110265_CD8_2


title: 110267_CD8_7


title: 110268_CD8_2


title: 110268_CD8_0


title: 110260_CD8_0


title: 110260_CD8_2


title: 110260_CD8_28


title: 110265_CD8_7


title: 110265_CD8_28


title: 110260_CD8_7


title: 110267_CD8_2


title: 110265_CD8_0


title: 110267_CD8_28


title: 110258_CD8_28


title: 110258_CD8_7


title: 110258_CD8_2


title: 110258_CD8_0


title: 110255_CD8_2


title: 110250_CD8_28


title: 110257_CD8_28


title: 110248_CD8_28


title: 110257_CD8_7


title: 110256_CD8_7


title: 110244_CD8_7


title: 110255_CD8_0


title: 110256_CD8_0


title: 110244_CD8_0


title: 110243_CD8_28


title: 110255_CD8_28


title: 110248_CD8_0


title: 110257_CD8_0


title: 110248_CD8_2


title: 110250_CD8_0


title: 110250_CD8_7


title: 110248_CD8_7


title: 110244_CD8_28


title: 110257_CD8_2


title: 110250_CD8_2


title: 110256_CD8_2


title: 110255_CD8_7


title: 110243_CD8_7


title: 110216_CD8_28


title: 110243_CD8_2


title: 110216_CD8_7


title: 110214_CD8_7


title: 110210_CD8_7


title: 110210_CD8_0


title: 110211_CD8_0


title: 110210_CD8_28


title: 110215_CD8_7


title: 110215_CD8_28


title: 110215_CD8_2


title: 110215_CD8_0


title: 110214_CD8_2


title: 110216_CD8_0


title: 110216_CD8_2


title: 110209_CD8_2


title: 110209_CD8_7


title: 110211_CD8_2


title: 110204_CD8_7


title: 110209_CD8_28


title: 110211_CD8_7


title: 110204_CD8_28


title: 110256_CD8_28


title: 110211_CD8_28


title: 110214_CD8_28


title: 110209_CD8_0


title: 110214_CD8_0


title: 110204_CD8_0


title: 110204_CD8_2


title: 110210_CD8_2


title: 110202_CD8_7


title: 110199_CD8_28


title: 110202_CD8_2


title: 110195_CD8_7


title: 110202_CD8_0


title: 110196_CD8_28


title: 110199_CD8_0


title: 110199_CD8_7


title: 110192_CD8_2


title: 110244_CD8_2


title: 110199_CD8_2


title: 110194_CD8_0


title: 110283_CD4_28


title: 110196_CD8_0


title: 110196_CD8_2


title: 110195_CD8_2


title: 110195_CD8_0


title: 110192_CD8_0


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title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCU2_H8_AD002_indexed

status: Public on Dec 12 2019

city: La Jolla

first: Joseph

middle: R

last: Ecker

address: 10010 North Torrey Pines Road

department: Genomic Analysis Laboratory

institute: HHMI-Salk-Institute

data_processing:
Read mapping and the partitioning of transcriptome and methylome reads   To map methylome reads, sequencing reads were mapped to in-silico bisulfite converted hg19 reference genome as previously described (Luo et al., 2017). Mapped reads with MAPQ > 10 were retained for further analyses. Sequencing reads with non-CG methylation level < 0.5 and number of cytosine ≥ 3 were considered as true methylome reads. Tab-delimited (allc) files containing methylation level for every cytosine positions was generated using methylpy call_methylated_sites function (Schultz et al., 2015).     To map transcriptome reads, sequencing reads were mapped to Gencode V19 transcriptome index using STAR 2.5.2b with the following parameters: --alignEndsType EndToEnd --outSAMstrandField intronMotif --outSAMtype BAM Unsorted --outSAMunmapped Within --outSAMattributes NH HI AS NM MD --sjdbOverhang 100 --outFilterType BySJout --outFilterMultimapNmax 20 --alignSJoverhangMin 8 --alignSJDBoverhangMin 1 --outFilterMismatchNmax 999 --outFilterMismatchNoverLmax 0.04 --alignIntronMin 20 --alignIntronMax 1000000 --alignMatesGapMax 1000000 --outSAMattrRGline ID:4 PL:Illumina. Mapped reads with MAPQ > 10 were retained for further analyses. Non-CG methylation levels for each STAR mapped read  was determined from the MD tag. Mapped reads with non-CG methylation levels greater than 0.9 and number of cytosine ≥ 3 were considered as true transcriptome reads. Transcriptome reads were counted across gene annotations using featureCount 1.6.4 (Liao et al. 2014) with the default parameters. Gene expression was quantified using either only exonic reads with -t exon, or both exonic and intronic reads with -t gene. For snATAC-seq data - Using a custom python script, we first de-multicomplexed FASTQ files by integrating the cell barcode (concatenate reads pair in I1.fastq and I2.fastq) into the read name (R1.fastq and R2 fastq) in the following format: "@"+"barcode"+":"+"original_read_name".  Demulticomplexed reads were aligned to the corresponding reference genome (hg19) using bwa (0.7.13-r1126) in pair-end mode with default parameter settings. Alignments were then sorted based on the read name using samtools (v1.9). Pair-end reads were converted into fragments and only those that are 1) properly paired (according to SMA flag value); 2) uniquely mapped (MAPQ > 30); 3) with length less than 1000bp were kept.  Since fragments were sorted by barcode (integrated into the read name), fragments belonging to the same cell (or barcode) were automatically grouped together which allowed for removing PCR duplicates for each cell separately.  Using remaining fragments, a snap-format (Single-Nucleus Accessibility Profiles) file was generated.
Genome_build: hg19
Supplementary_files_format_and_content: tab delimited text files of methylcytosine calls; columns in allc files are: column 1 - chromosome; column 2 - position; column 3 - strand; column 4 - class; column 5 - mC reads; column 6 - total reads; column 7 - methylated (Boolean value indicating the result of statistical test for methylated cytosines). snap file is hierarchically structured hdf5 file that contains the following sessions: header (HD), cell-by-bin matrix (BM), cell-by-peak matrix (PM), cell-by-gene matrix (GM), barcode (BD) and fragment (FM). HD session contains snap-file version, date, alignment and reference genome information. BD session contains all unique barcodes and corresponding meta data. BM session contains cell-by-bin matrices of different resolutions (or bin sizes). PM session contains cell-by-peak count matrix. PM session contains cell-by-gene count matrix. FM session contains all usable fragments for each cell. Fragments are indexed for fast search. A detailed documentation of snap file can be found here (https://docs.google.com/document/d/1AGyn_WJTr0A1SKcfrEgum-jvAJjWd84jZ6DwbwiGRaQ/edit?usp=sharing)

source_name: Human frontal cortex

growth_protocol: HEK293T cells were cultured in DMEM with 15% FBS and 1% Penicillin-Streptomycin and dissociated with 1X TrypLE. H1 human ESCs (WA01, WiCell Research Institute) were maintained in feeder-free mTesR1 medium (Stemcell Technologies). hESCs (passage 26) were dispersed with 1U/ml Dispase and collected for single-cell sorting or nuclei isolation. Postmortem human brain biospecimens GUID: NDARKD326LNK and NDARKJ183CYT were obtained from NIH NeuroBioBank at University of Miami Brain Endowment Bank. Postmortem human brain biospecimens UMB4540, UMB5577 and UMB5580 are obtained from NIH NeuroBioBank at University of Maryland Brain and Tissue Bank.

extract_protocol:
Nuclei isolation from cultured cells for snmCT-seq: Cell pellets containing 1 million cells were resuspended in 600 µl NIBT [250 mM Sucrose, 10 mM Tris-Cl pH=8, 25 mM KCl, 5mM MgCl2, 0.1% Triton X-100, 1mM DTT, 1:100 Proteinase inhibitor (Sigma-Aldrich P8340), 1:1000 SUPERaseIn RNase Inhibitor (ThermoFisher Scientific AM2694), 1:1000 RNaseOUT RNase Inhibitor (ThermoFisher Scientific 10777019)]. The lysate was transferred to a pre-chilled 2 ml dounce homogenizer (Sigma-Aldrich D8938) and dounced using loose and tight pestles for 20 times each. The lysate was then mixed with 400 µl of 50% Iodixanol (Sigma-Aldrich D1556) and gently pipetted on top of 500 µl 25% Iodixanol cushion. Nuclei were pelleted by centrifugation at 10,000 x g at 4°C for 20 min using a swing rotor. The pellet was resuspended in 2 ml of DPBS supplemented with 1:1000 SUPERaseIn RNase Inhibitor and 1:1000 RNaseOUT RNase Inhibitor. Hoechst 33342 was added to the sample to a final concentration of 1.25 nM and incubated on ice for 5 min for nuclei staining. Nuclei were pelleted by 1,000 x g at 4°C for 10 min and resuspended in 1 ml of DPBS supplemented with RNase inhibitors.   Nuclei isolation from human brain tissues and GpC methyltransferase treatment  Brain tissue samples were ground in liquid nitrogen with cold mortar and pestle, and then aliquoted and store at -80°C. Approximately 100mg of ground tissue was resuspended in 3 ml NIBT (250 mM Sucrose, 10 mM Tris-Cl pH=8, 25 mM KCl, 5mM MgCl2, 0.2% IGEPAL CA-630, 1mM DTT, 1:100 Proteinase inhibitor (Sigma-Aldrich P8340), 1:1000 SUPERaseIn RNase Inhibitor (ThermoFisher Scientific AM2694), 1:1000 RNaseOUT RNase Inhibitor (ThermoFisher Scientific 10777019)). The lysate was transferred to a pre-chilled 7 ml dounce homogenizer (Sigma-Aldrich D9063) and dounced using loose and tight pestles for 40 times each. The lysate was then mixed with 2 ml of 50% Iodixanol (Sigma-Aldrich D1556) to generate a nuclei suspension with 20% Iodixanol. Gently pipet 1 ml of the nuclei suspension on top of 500 µl 25% Iodixanol cushion in each of the 5 freshly prepared 2ml microcentrifuge tubes. Nuclei were pelleted by centrifugation at 10,000 x g at 4°C for 20 min using a swing rotor. The pellet was resuspended in 1ml of DPBS supplemented with 1:1000 SUPERaseIn RNase Inhibitor and 1:1000 RNaseOUT RNase Inhibitor. A 10 µl aliquot of the suspension was taken for nuclei counting using a Biorad TC20 Automated Cell Counter. One million nuclei aliquots were pelleted by 1,000 x g at 4°C for 10 min and resuspended in 200 µl of GpC methyltransferase M.CviPI (NEB M0227L) reaction containing 1X GC Reaction Buffer, 0.32 nM S-Adenoslylmethionime, 80U 4U/µl M.CviPI, 1:100 SUPERaseIn RNase Inhibitor and 1:100 RNaseOUT RNase Inhibitor and incubated at 37°C for 8 min. The reaction was stopped by adding 800 µl of ice-cold DPBS with 1:1000 RNase inhibitors and mixing. Hoechst 33342 was added to the sample to a final concentration of 1.25 nM and incubated on ice for 5 min for nuclei staining. Nuclei were pelleted by 1,000 x g at 4°C for 10 min, resuspended in 900 µl of DPBS supplemented with 1:1000 RNase inhibitors and 100 µl of 50mg/ml UltrapureTM BSA (Ambion AM2618) and incubated on ice for 5 min for blocking. Neuronal nuclei were labeled by adding 1 µl of AlexaFluor488-conjugated anti-NeuN antibody (clone A60, MilliporeSigma MAB377XMI) for 20 min. For snATAC-seq, nuclei were isolated from frozen mouse brain sections and permeabilized. Nuclei were tagmented with Tn5 in 96 wells to introduce a first barcode (T5 and T7). After pooling, 20 nuclei were sorted into 768 wells and a second barcode (i5 and i7) was introduced by PCR.
Reverse transcription for snmC2T-seq Single cells or single nuclei were sorted into 384-well PCR plates (ThermoFisher 4483285) containing 1 µl mCT-seq reverse transcription reaction per well. The mCT-seq reverse transcription reaction contained 1X Superscript II First-Strand Buffer, 5mM DTT, 0.1% Triton X-100, 2.5 mM MgCl2, 500 µM each of 5’-methyl-dCTP (NEB N0356S), dATP, dTTP and dGTP, 1.2 µM dT30VN_4 oligo-dT primer (5’-AAGCAGUGGUAUCAACGCAGAGUACUTTTTTUTTTTTUTTTTTUTTTTTUTTTTTVN-3’ was used the cultured cell experiments; 5’-/5SpC3/AAGCAGUGGUAUCAACGCAGAGUACUTTTTTUTTTTTUTTTTTUTTTTTUTTTTTVN-3’ was used for human brain experiments), 2.4 µM TSO_3 template switching oligo (/5SpC3/AAGCAGUGGUAUCAACGCAGAGUGAAUrGrG+G), 1U RNaseOUT RNase inhibitor, 0.5 U SUPERaseIn RNase inhibitor, 10U Superscript II Reverse Transcriptase (ThermoFisher 18064-071). For snmC2T-seq, the reaction further included 2 µM N6_2 random primer (/5SpC3/AAGCAGUGGUAUCAACGCAGAGUACNNNNNN). After sorting, the PCR plates were vortexed and centrifuged at 2000 x g. The plates were placed in a thermocycler and incubated using the following program: 25°C for 5 min, 42°C for 90min, 70°C 15min followed by 4°C. cDNA amplification for snmC2T-seq 3 µl of mCT-seq cDNA amplification mix was added into each mCT-seq reverse transcription reaction. mCT-seq cDNA amplification reaction contains 1X KAPA 2G Buffer A, 600 nM ISPCR23_2 PCR primer (/5SpC3/AAGCAGUGGUAUCAACGCAGAGU), 0.08U KAPA2G Robust HotStart DNA Polymerase (5 U/μL, Roche KK5517). PCR reactions were performed using a thermocycler with the following conditions: 95°C 3min -> [95°C 15 sec -> 60°C 30 sec -> 72°C 2min] -> 72°C 5min -> 4°C. The cycling steps were repeated for 12 cycles for scmCT-seq using H1 or HEK293 cells, 15 cycles for snmCT-seq using H1 or HEK293 cells and 14 cycles for snmC2T-seq using human brain tissues. Digestion of unincorporated DNA oligos for snmCT-seq For scmCT-seq and snmCT-seq using H1 and HEK293 cells, 1 µl uracil cleavage mix was added to into cDNA amplification reaction. Each 1 µl uracil cleavage mix contains 0.25 µl Uracil DNA Glycosylase (Enzymatics G5010) and 0.25 µl Endonuclease VIII (Enzymatics Y9080) and 0.5 µl Elution Buffer (Qiagen 19086). Unincorporated DNA oligos were digested at 37°C for 30 min using a thermocycler. We have found that Endonuclease VIII is dispensable for the digestion of unincorporated DNA oligos since the alkaline condition during the desulfonation step of bisulfite conversion can effective cleave abasic sites created by Uracil DNA Glycosylase (Greenberg, 2014). Therefore for snmC2T-seq using human brain tissues, each cDNA amplification reaction was treated with 1µl uracil cleavage mix containing 0.5 µl Uracil DNA Glycosylase (Enzymatics G5010-1140) and 0.5 µl Elution Buffer (Qiagen 19086). For snATAC-seq, nuclei were tagmented with Tn5 in 96 wells to introduce a first barcode (T5 and T7). After pooling, 20 nuclei were sorted into 768 wells and a second barcode (i5 and i7) was introduced by PCR. Libraries were sequenced on a HiSeq2500 (Illumina) with following read lengths: 50 + 14 + 14 + 50 (Read1 + Index1 + Index2 + Read2).

value: Human frontal cortex

tag: Sex

value: Male

tag: donor

tag: protocol


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCU2_H7_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCU2_H9_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCU2_H8_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCU2_H8_AD006_indexed


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title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G9_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G3_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_H11_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G3_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G3_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G2_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G2_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G7_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G2_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G2_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G1_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G1_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G4_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G4_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G1_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G1_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G11_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G11_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G12_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G12_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G11_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G8_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G10_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G10_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F9_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G3_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F8_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F8_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G10_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F8_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F9_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F7_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F7_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F7_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F6_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F6_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F6_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F5_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F5_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F9_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F5_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F4_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F4_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F3_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F4_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F2_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F2_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F4_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F3_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F2_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F1_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F1_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F12_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F1_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F6_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F12_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F12_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F1_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F11_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F11_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F10_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F10_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E9_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E9_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E8_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E7_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E7_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E8_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F12_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E8_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E9_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E8_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E6_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E5_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E6_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F3_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E5_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E6_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E6_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E5_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E4_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_F10_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E3_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E4_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E3_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E3_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E7_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E2_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E2_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E4_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E1_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E1_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E4_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E1_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E11_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E12_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E10_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E12_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E12_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E10_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E11_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E2_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D8_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D8_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D9_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D8_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D9_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E10_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D9_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_H4_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D7_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D7_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E1_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_E12_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G7_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D7_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D6_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D6_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D7_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D6_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D5_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D5_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D8_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D5_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D4_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D5_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D4_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D4_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D3_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D3_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D4_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D3_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D3_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D1_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D2_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D1_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D1_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D2_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D12_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D2_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D12_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D12_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D11_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D11_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D10_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D10_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D10_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D10_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C9_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C9_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C9_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C8_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C9_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C8_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C7_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C7_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C8_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D12_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C7_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D1_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C7_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C6_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C6_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C5_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C5_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C5_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_D11_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C6_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C4_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C4_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C3_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C4_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C3_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C3_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C5_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C3_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_G9_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C2_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C2_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C2_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C1_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C1_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C12_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C6_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C12_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C1_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C11_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C11_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C11_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C10_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C12_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C10_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C11_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C10_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B9_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C10_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B9_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B8_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B9_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B7_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B8_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B7_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B8_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B6_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B7_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_C2_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B6_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B6_AD002_indexed


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title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B5_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B7_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B4_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B5_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B5_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B4_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B3_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B3_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B9_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B4_AD002_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B2_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B1_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B1_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B2_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B1_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B2_AD002_indexed


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title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B11_AD008_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B12_AD006_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B10_AD010_indexed


title: 171030_NDARKJ183CYT_hs_25yr_BA10_FCL2_B1_AD002_indexed