title: 40_K562_ASTAR-RNA-5-1

description: 40_K562_ASTAR-RNA-5-1.FCH7W3GBBXY_L8_R1_IGCGTAGTA-CTCTCTAT


title: 40_K562_ASTAR-RNA-5-15

status: Public on Jun 09 2020

type: SRA

city: Singapore

first: Chadi

last: El Farran

address: 61 Biopolis Drive

country: Singapore

institute: Institute of Molecular and Cell Biology

description: 40_K562_ASTAR-RNA-5-15.FCH7W3GBBXY_L8_R1_ICGGAGCCT-CGTCTAAT

library_source: transcriptomic

data_processing:
Libraries were mapped to hg19 genome using STAR allowing up to 2 mismatches. Only uniquely mapped reads were kept for further analysis.
Genes were quantified using Cuffquant.
Libraries were normalized using Cuffnorm.
Genome_build: hg19
Supplementary_files_format_and_content: Tab delimieted text table containing the FPKM for every gene in every single cell library

molecule: polyA RNA

organism: Homo sapiens

growth_protocol: K562 (ATCC® CCL-243™) were maintained in K562 medium, which is  composed of RPMI1640 medium with L- Glutamine (HyClone) supplemented with  10% Fetal Bovine Serum (Gibco), 200mM L-Glutamine (100X, Gibco), 10000  U/ml Penicillin-Streptomycin (100X, Gibco).

extract_protocol:
Single cell suspensions were harvested for ASTAR Scripts run using C1 Fluidigm Open App chips (10-17um).
The concentration of amplified cDNA was measured by high sensitivity bioanalyzer chips and diluted to required range of cDNA for following library preparation steps. ASTAR-mRNAseq libraries were prepared using Nextera XT DNA Library Preparation Kit (FC-131-1096) following “Using C1 to Generate Single-Cell cDNA Libraries for mRNA Sequencing” manual.

tag: cell line


title: 40_K562_ASTAR-RNA-5-17

description: 40_K562_ASTAR-RNA-5-17.FCH7W3GBBXY_L8_R1_ITACGCTGC-CTCTCTAT


title: 40_K562_ASTAR-RNA-5-16

description: 40_K562_ASTAR-RNA-5-16.FCH7W3GBBXY_L8_R1_ICGGAGCCT-TCTCTCCG


title: 40_K562_ASTAR-RNA-5-12

description: 40_K562_ASTAR-RNA-5-12.FCH7W3GBBXY_L8_R1_ICGGAGCCT-ACTGCATA


title: 40_K562_ASTAR-RNA-5-14

description: 40_K562_ASTAR-RNA-5-14.FCH7W3GBBXY_L8_R1_ICGGAGCCT-CTAAGCCT


title: 40_K562_ASTAR-RNA-5-10

description: 40_K562_ASTAR-RNA-5-10.FCH7W3GBBXY_L8_R1_ICGGAGCCT-TATCCTCT


title: 40_K562_ASTAR-ATAC-5-6

description: 40_K562_ASTAR-ATAC-5-6.FCH7WH7BBXY_L7_R1_IAGGCAGAA-ACTGCATA

library_source: genomic

data_processing:
Libraries were mapped to hg19 genome using STAR with the options –alignIntronMax and –AlignEndsType set to 1 and EndToEnd respectively.
Duplicates were removed from the libraries using the “MarkDuplicate” module of PICARD
Mapped files were merged using samtools and peaks were called to identify the Highly accessible regions using MACS2 and bedgraphs were generated using makeUCSCfile of HOMER.
Then the deduplicated libraries along with the Highly accessible regions bed file were uploaded to ChromVAR to identify the variable motifs.
Genome_build: hg19
Supplementary_files_format_and_content: bedGraphs indicating the enrichment of the libraries on the Genome/

molecule: genomic DNA

extract_protocol:
Single cell suspensions were harvested for ASTAR Scripts run using C1 Fluidigm Open App chips (10-17um).
The open chromatin was transposed by Tn5 transposase. Cell specific barcode was integrated to tagmented DNA of each cell by PCR amplification with indexed primer. The amplified PCR produced was purified by Ampure XP beads and the purified ATACseq library was sent for sequencing.


title: 40_K562_ASTAR-ATAC-5-5

description: 40_K562_ASTAR-ATAC-5-5.FCH7WH7BBXY_L7_R1_IAGGCAGAA-GTAAGGAG


title: 40_K562_ASTAR-ATAC-5-9

description: 40_K562_ASTAR-ATAC-5-9.FCH7WH7BBXY_L7_R1_ITCCTGAGC-TAGATCGC


title: 40_K562_ASTAR-RNA-5-11

description: 40_K562_ASTAR-RNA-5-11.FCH7W3GBBXY_L8_R1_ICGGAGCCT-GTAAGGAG


title: 40_K562_ASTAR-ATAC-5-7

description: 40_K562_ASTAR-ATAC-5-7.FCH7WH7BBXY_L7_R1_IAGGCAGAA-AAGGAGTA


title: 40_K562_ASTAR-ATAC-5-4

description: 40_K562_ASTAR-ATAC-5-4.FCH7WH7BBXY_L7_R1_IAGGCAGAA-AGAGTAGA


title: 40_K562_ASTAR-ATAC-5-8

description: 40_K562_ASTAR-ATAC-5-8.FCH7WH7BBXY_L7_R1_IAGGCAGAA-CTAAGCCT


title: 40_K562_ASTAR-ATAC-5-40

description: 40_K562_ASTAR-ATAC-5-40.FCH7WH7BBXY_L7_R1_ICTCTCTAC-CTAAGCCT


title: 40_K562_ASTAR-RNA-5-25

description: 40_K562_ASTAR-RNA-5-25.FCH7W3GBBXY_L8_R1_IATGCGCAG-CTCTCTAT


title: 40_K562_ASTAR-ATAC-5-3

description: 40_K562_ASTAR-ATAC-5-3.FCH7WH7BBXY_L7_R1_IAGGCAGAA-TATCCTCT


title: 40_K562_ASTAR-ATAC-5-39

description: 40_K562_ASTAR-ATAC-5-39.FCH7WH7BBXY_L7_R1_ICTCTCTAC-AAGGAGTA


title: 40_K562_ASTAR-RNA-5-29

description: 40_K562_ASTAR-RNA-5-29.FCH7W3GBBXY_L8_R1_IATGCGCAG-AAGGAGTA


title: 40_K562_ASTAR-ATAC-5-36

description: 40_K562_ASTAR-ATAC-5-36.FCH7WH7BBXY_L7_R1_ICTCTCTAC-AGAGTAGA


title: 40_K562_ASTAR-ATAC-5-38

description: 40_K562_ASTAR-ATAC-5-38.FCH7WH7BBXY_L7_R1_ICTCTCTAC-ACTGCATA


title: 40_K562_ASTAR-ATAC-5-37

description: 40_K562_ASTAR-ATAC-5-37.FCH7WH7BBXY_L7_R1_ICTCTCTAC-GTAAGGAG


title: 40_K562_ASTAR-ATAC-5-33

description: 40_K562_ASTAR-ATAC-5-33.FCH7WH7BBXY_L7_R1_ICTCTCTAC-TAGATCGC


title: 40_K562_ASTAR-ATAC-5-35

description: 40_K562_ASTAR-ATAC-5-35.FCH7WH7BBXY_L7_R1_ICTCTCTAC-TATCCTCT


title: 40_K562_ASTAR-ATAC-5-34

description: 40_K562_ASTAR-ATAC-5-34.FCH7WH7BBXY_L7_R1_ICTCTCTAC-CTCTCTAT


title: 40_K562_ASTAR-RNA-5-19

description: 40_K562_ASTAR-RNA-5-19.FCH7W3GBBXY_L8_R1_ITACGCTGC-GTAAGGAG


title: 40_K562_ASTAR-RNA-5-21

description: 40_K562_ASTAR-RNA-5-21.FCH7W3GBBXY_L8_R1_ITACGCTGC-AAGGAGTA


title: 40_K562_ASTAR-RNA-5-13

description: 40_K562_ASTAR-RNA-5-13.FCH7W3GBBXY_L8_R1_ICGGAGCCT-AAGGAGTA


title: 40_K562_ASTAR-ATAC-5-30

description: 40_K562_ASTAR-ATAC-5-30.FCH7WH7BBXY_L7_R1_ITAGGCATG-ACTGCATA


title: 40_K562_ASTAR-ATAC-5-32

description: 40_K562_ASTAR-ATAC-5-32.FCH7WH7BBXY_L7_R1_ITAGGCATG-CTAAGCCT


title: 40_K562_ASTAR-ATAC-5-31

description: 40_K562_ASTAR-ATAC-5-31.FCH7WH7BBXY_L7_R1_ITAGGCATG-AAGGAGTA


title: 40_K562_ASTAR-ATAC-5-2

description: 40_K562_ASTAR-ATAC-5-2.FCH7WH7BBXY_L7_R1_IAGGCAGAA-CTCTCTAT


title: 40_K562_ASTAR-ATAC-5-25

description: 40_K562_ASTAR-ATAC-5-25.FCH7WH7BBXY_L7_R1_ITAGGCATG-TAGATCGC


title: 40_K562_ASTAR-ATAC-5-24

description: 40_K562_ASTAR-ATAC-5-24.FCH7WH7BBXY_L7_R1_IGGACTCCT-CTAAGCCT


title: 40_K562_ASTAR-ATAC-5-26

description: 40_K562_ASTAR-ATAC-5-26.FCH7WH7BBXY_L7_R1_ITAGGCATG-CTCTCTAT


title: 40_K562_ASTAR-ATAC-5-23

description: 40_K562_ASTAR-ATAC-5-23.FCH7WH7BBXY_L7_R1_IGGACTCCT-AAGGAGTA


title: 40_K562_ASTAR-ATAC-5-22

description: 40_K562_ASTAR-ATAC-5-22.FCH7WH7BBXY_L7_R1_IGGACTCCT-ACTGCATA


title: 40_K562_ASTAR-ATAC-5-21

description: 40_K562_ASTAR-ATAC-5-21.FCH7WH7BBXY_L7_R1_IGGACTCCT-GTAAGGAG


title: 40_K562_ASTAR-ATAC-5-20

description: 40_K562_ASTAR-ATAC-5-20.FCH7WH7BBXY_L7_R1_IGGACTCCT-AGAGTAGA


title: 40_K562_ASTAR-ATAC-5-19

description: 40_K562_ASTAR-ATAC-5-19.FCH7WH7BBXY_L7_R1_IGGACTCCT-TATCCTCT


title: 40_K562_ASTAR-ATAC-5-1

description: 40_K562_ASTAR-ATAC-5-1.FCH7WH7BBXY_L7_R1_IAGGCAGAA-TAGATCGC


title: 40_K562_ASTAR-ATAC-5-18

description: 40_K562_ASTAR-ATAC-5-18.FCH7WH7BBXY_L7_R1_IGGACTCCT-CTCTCTAT


title: 40_K562_ASTAR-ATAC-5-15

description: 40_K562_ASTAR-ATAC-5-15.FCH7WH7BBXY_L7_R1_ITCCTGAGC-AAGGAGTA


title: 40_K562_ASTAR-ATAC-5-16

description: 40_K562_ASTAR-ATAC-5-16.FCH7WH7BBXY_L7_R1_ITCCTGAGC-CTAAGCCT


title: 40_K562_ASTAR-ATAC-5-17

description: 40_K562_ASTAR-ATAC-5-17.FCH7WH7BBXY_L7_R1_IGGACTCCT-TAGATCGC


title: 40_K562_ASTAR-ATAC-5-14

description: 40_K562_ASTAR-ATAC-5-14.FCH7WH7BBXY_L7_R1_ITCCTGAGC-ACTGCATA


title: 40_K562_ASTAR-ATAC-5-12

description: 40_K562_ASTAR-ATAC-5-12.FCH7WH7BBXY_L7_R1_ITCCTGAGC-AGAGTAGA


title: D8-2_STAR-RNA

data_processing:
Libraries were mapped to hg19 genome using STAR allowing up to 2 mismatches. Only uniquely mapped reads were kept for further analysis.
Genes were quantified using Cuffquant.
Libraries were normalized using Cuffnorm.
FPKM table was uploaded to Monocle to generate pseudotime trajectory.
Genome_build: hg19
Supplementary_files_format_and_content: Tab delimieted text table containing the FPKM for every gene in every single cell library

source_name: Umblical Cord Blood Cells Undergoing Differentiation

growth_protocol: Mononuclear cells were cultured in erythroblast diffferentiation medium, composed of SFEM II Medium (Stem Cell Tech)  supplementedwith 10ng/mL IL3, 10ng/mL IL6, 50ng/mL SCF, 2U/mL EPO, 40ng/mL IGF1, 1mM Dexamethasone, 50ug/mL Vit C.

extract_protocol:
Mononuclear cells was isolated from the buffy coat layer of the corb blood by the Ficoll-Paque layering assay. Cells were then cultured with erythrobalst differentiation medium. Single cell suspensions were collected at the respective time points and the live cells were enriched by Dead Cell Removal Kit (Miltenyi). The enriched cells were then harvested for STAR Scripts run using C1 Fluidigm Open App chips (10-17um).
The concentration of amplified cDNA was measured by high sensitivity bioanalyzer chips and diluted to required range of cDNA for following library preparation steps. STAR mRNAseq libraries were prepared using Nextera XT DNA Library Preparation Kit (FC-131-1096) following “Using C1 to Generate Single-Cell cDNA Libraries for mRNA Sequencing” manual.

tag: timepoint


title: D8_2R-96


title: 40_K562_ASTAR-ATAC-5-11

description: 40_K562_ASTAR-ATAC-5-11.FCH7WH7BBXY_L7_R1_ITCCTGAGC-TATCCTCT


title: D8-1_STAR-RNA


title: 40_K562_ASTAR-ATAC-5-29

description: 40_K562_ASTAR-ATAC-5-29.FCH7WH7BBXY_L7_R1_ITAGGCATG-GTAAGGAG


title: 40_K562_ASTAR-ATAC-5-13

description: 40_K562_ASTAR-ATAC-5-13.FCH7WH7BBXY_L7_R1_ITCCTGAGC-GTAAGGAG


title: D8_2R-95


title: 40_K562_ASTAR-ATAC-5-28

description: 40_K562_ASTAR-ATAC-5-28.FCH7WH7BBXY_L7_R1_ITAGGCATG-AGAGTAGA


title: 40_K562_ASTAR-ATAC-5-10

description: 40_K562_ASTAR-ATAC-5-10.FCH7WH7BBXY_L7_R1_ITCCTGAGC-CTCTCTAT


title: D8_2R-90


title: D8_2R-92


title: D8_2R-94


title: 40_K562_ASTAR-ATAC-5-27

description: 40_K562_ASTAR-ATAC-5-27.FCH7WH7BBXY_L7_R1_ITAGGCATG-TATCCTCT


title: D8_2R-93


title: D8_2R-9


title: D8_2R-88


title: D8_2R-89


title: D8_2R-86


title: D8_2R-82


title: D8_2R-84


title: D8_2R-85


title: D8_2R-81


title: D8_2R-8


title: D8_2R-80


title: D8_2R-87


title: D8_2R-78


title: D8_2R-79


title: D8_2R-83


title: D8_2R-91


title: D8_2R-75


title: D8_2R-74


title: D8_2R-76


title: D8_2R-71


title: D8_2R-72


title: D8_2R-67


title: D8_2R-65


title: D8_2R-70


title: D8_2R-68


title: D8_2R-7


title: D8_2R-66


title: D8_2R-63


title: D8_2R-62


title: D8_2R-69


title: D8_2R-60


title: D8_2R-59


title: D8_2R-6


title: D8_2R-58


title: D8_2R-57


title: D8_2R-77


title: D8_2R-73


title: D8_2R-56


title: D8_2R-53


title: D8_2R-55


title: D8_2R-54


title: D8_2R-52


title: D8_2R-64


title: D8_2R-50


title: D8_2R-51


title: D8_2R-5


title: D8_2R-49


title: D8_2R-61


title: D8_2R-47


title: D8_2R-46


title: D8_2R-44


title: D8_2R-42


title: D8_2R-41


title: D8_2R-43


title: D8_2R-40


title: D8_2R-34


title: D8_2R-37


title: D8_2R-4


title: D8_2R-38


title: D8_2R-35


title: D8_2R-36


title: D8_2R-39


title: D8_2R-31


title: D8_2R-32


title: D8_2R-28


title: D8_2R-3


title: D8_2R-29


title: D8_2R-27


title: D8_2R-30


title: D8_2R-48


title: D8_2R-26


title: D8_2R-25


title: D8_2R-23


title: D8_2R-24


title: D8_2R-22


title: D8_2R-45


title: D8_2R-20


title: D8_2R-21


title: D8_2R-33


title: D8_2R-19


title: D8_2R-2


title: D8_2R-18


title: D8_2R-16


title: D8_2R-15


title: D8_2R-17


title: D8_2R-12


title: D8_2R-13


title: D8_2R-14


title: D8_1R-94


title: D8_1R-96


title: D8_1R-93


title: D8_2R-11


title: D8_1R-92


title: D8_1R-95


title: D8_1R-89


title: D8_1R-9


title: D8_1R-88


title: D8_1R-86


title: D8_1R-87


title: D8_1R-91


title: D8_1R-82


title: D8_1R-85


title: D8_1R-83


title: D8_1R-81


title: D8_1R-80


title: D8_1R-84


title: D8_1R-8


title: D8_2R-10


title: D8_1R-79


title: D8_1R-78


title: D8_1R-75


title: D8_1R-76


title: D8_1R-90


title: D8_1R-72


title: D8_1R-74


title: D8_1R-7


title: D8_1R-68


title: D8_1R-70


title: D8_1R-69


title: D8_1R-67


title: D8_1R-71


title: D8_1R-66


title: D8_1R-65


title: D8_1R-63


title: D8_1R-64


title: D8_1R-62


title: D8_1R-61


title: D8_1R-60


title: D8_1R-6


title: D8_1R-59


title: D8_1R-77


title: D8_1R-56


title: D8_1R-55


title: D8_1R-57


title: D8_1R-54


title: D8_1R-73


title: D8_1R-52


title: D8_1R-53


title: D8_1R-51


title: D8_1R-50


title: D8_1R-5


title: D8_1R-49


title: D8_1R-48


title: D8_1R-43


title: D8_1R-47


title: D8_1R-46


title: D8_1R-42


title: D8_1R-41


title: D8_1R-4


title: D8_1R-44


title: D8_1R-38


title: D8_1R-37


title: D8_1R-40


title: D8_1R-39


title: D8_1R-34


title: D8_1R-36


title: D8_1R-35


title: D8_1R-58


title: D8_1R-33


title: D8_1R-29


title: D8_1R-31


title: D8_1R-30


title: D8_1R-28


title: D8_1R-32


title: D8_1R-26


title: D8_1R-45


title: D8_1R-27


title: D8_1R-25


title: D8_1R-20


title: D8_1R-24


title: D8_1R-22


title: D8_1R-2


title: D8_1R-19


title: D8_1R-23


title: D8_1R-21


title: D8_1R-16


title: D8_1R-15


title: D8_1R-17


title: D8_1R-13


title: D8_1R-14


title: D8_1R-3


title: D8_1R-11


title: D6R-95


title: D6R-96


title: D6R-94


title: D6R-93


title: D6R-9


title: D6R-92


title: D8_1R-10


title: D6R-91


title: D6R-90


title: D6R-88


title: D6R-87


title: D6R-85


title: D6R-86


title: D6R-89


title: D6R-84


title: D8_1R-18


title: D6R-81


title: D6R-8


title: D6R-80


title: D6R-83


title: D6R-79


title: D8_1R-12


title: D6R-82


title: D6R-77


title: D6R-75


title: D6R-73


title: D6R-72


title: D6R-74


title: D6R-7


title: D6R-69


title: D6R-70


title: D6R-67


title: D6R-66


title: D6R-68


title: D6R-65


title: D6R-64


title: D6R-71


title: D6R-63


title: D6R-6


title: D6R-61


title: D6R-60


title: D6R-62


title: D6R-78


title: D6R-59


title: D6R-58


title: D6R-76


title: D6R-52


title: D6R-56


title: D6R-54


title: D6R-57


title: D6R-51


title: D6R-50


title: D6R-5


title: D6R-49


title: D6R-48


title: D6R-45


title: D6R-46


title: D6R-43


title: D6R-47


title: D6R-44


title: D6R-42


title: D6R-40


title: D6R-55


title: D6R-41


title: D6R-39


title: D6R-34


title: D6R-37


title: D6R-35


title: D6R-36


title: D6R-38


title: D6R-33


title: D6R-32


title: D6R-3


title: D6R-53


title: D6R-26


title: D6R-30


title: D6R-27


title: D6R-28


title: D6R-29


title: D6R-4


title: D6R-31


title: D6R-23


title: D6R-25


title: D6R-22


title: D6R-2


title: D6R-20


title: D6R-18


title: D6R-16


title: D6R-17


title: D6R-24


title: D6R-14


title: D6R-15


title: D12R-96


title: D6R-11


title: D6_STAR-RNA


title: D6R-12


title: D12R-95


title: D6R-10


title: D6R-21


title: D12R-94


title: D12R-92


title: D12R-91


title: D6R-19


title: D12R-90


title: D12R-9


title: D12R-86


title: D12R-85


title: D12R-84


title: D12R-87


title: D12R-83


title: D12R-93


title: D12R-82


title: D12R-79


title: D6R-13


title: D12R-81


title: D12R-80


title: D12R-77


title: D12R-78


title: D12R-8


title: D12R-76


title: D12R-72


title: D12R-74


title: D12R-71


title: D12R-75


title: D12R-89


title: D12R-88


title: D12R-7


title: D12R-69


title: D12R-62


title: D12R-66


title: D12R-63


title: D12R-68


title: D12R-67


title: D12R-65


title: D12R-61


title: D12R-60


title: D12R-58


title: D12R-6


title: D12R-59


title: D12R-53


title: D12R-55


title: D12R-54


title: D12R-57


title: D12R-56


title: D12R-70


title: D12R-51


title: D12R-73


title: D12R-50


title: D12R-5


title: D12R-49


title: D12R-47


title: D12R-46


title: D12R-48


title: D12R-45


title: D12R-64


title: D12R-44


title: D12R-41


title: D12R-38


title: D12R-42


title: D12R-40


title: D12R-4


title: D12R-39


title: D12R-34


title: D12R-36


title: D12R-32


title: D12R-33


title: D12R-3


title: D12R-29


title: D12R-28


title: D12R-35


title: D12R-26


title: D12R-31


title: D12R-25


title: D12R-24


title: D12R-52


title: D12R-23


title: D12R-21


title: D12R-43


title: D12R-22


title: D12R-20


title: D12R-2


title: D12R-19


title: D12R-37


title: D12R-18


title: D12R-16


title: D12R-17


title: D12R-13


title: D12R-15


title: D12R-14


title: D12R-12


title: D12R-27


title: D12R-10


title: D12R-30


title: D12_STAR-RNA


title: D10R-96


title: D10R-91


title: D10R-94


title: D10R-90


title: D10R-89


title: D10R-93


title: D10R-86


title: D10R-9


title: D10R-87


title: D10R-88


title: D10R-84


title: D10R-83


title: D10R-82


title: D10R-85


title: D10R-81


title: D10R-8


title: D10R-79


title: D12R-11


title: D10R-77


title: D10R-76


title: D10R-75


title: D10R-80


title: D10R-78


title: D10R-74


title: D10R-92


title: D10R-72


title: D10R-70


title: D10R-7


title: D10R-71


title: D10R-73


title: D10R-69


title: D10R-95


title: D10R-68


title: D10R-66


title: D10R-67


title: D10R-65


title: D10R-64


title: D10R-62


title: D10R-61


title: D10R-63


title: D10R-59


title: D10R-6


title: D10R-57


title: D10R-58


title: D10R-56


title: D10R-55


title: D10R-54


title: D10R-51


title: D10R-53


title: D10R-50


title: D10R-5


title: D10R-48


title: D10R-52


title: D10R-47


title: D10R-44


title: D10R-43


title: D10R-42


title: D10R-45


title: D10R-60


title: D10R-4


title: D10R-41


title: D10R-38


title: D10R-40


title: D10R-37


title: D10R-39


title: D10R-34


title: D10R-35


title: D10R-33


title: D10R-32


title: D10R-30


title: D10R-31


title: D10R-49


title: D10R-3


title: D10R-29


title: D10R-46


title: D10R-23


title: D10R-26


title: D10R-24


title: D10R-22


title: D10R-25


title: D10R-28


title: D10R-20


title: D10R-21


title: D10R-27


title: D10R-2


title: D10R-19


title: D10R-15


title: D10R-14


title: D10R-36


title: D10R-18


title: D10R-17


title: D10R-13


title: D10R-12


title: D8-2_STAR-ATAC

data_processing:
Libraries were mapped to hg19 genome using STAR with the options –alignIntronMax and –AlignEndsType set to 1 and EndToEnd respectively.
Duplicates were removed from the libraries using the “MarkDuplicate” module of PICARD
Mapped files were merged using samtools and peaks were called to identify the Highly accessible regions using MACS2.
Then the deduplicated libraries along with the Highly accessible regions bed file were uploaded to ChromVAR to identify the variable motifs.
Genome_build: hg19
Supplementary_files_format_and_content: Tab delimieted text table containing the Z score of every JASPAR motif in every single cell library

extract_protocol:
Mononuclear cells was isolated from the buffy coat layer of the corb blood by the Ficoll-Paque layering assay. Cells were then cultured with erythrobalst differentiation medium. Single cell suspensions were collected at the respective time points and the live cells were enriched by Dead Cell Removal Kit (Miltenyi). The enriched cells were then harvested for STAR Scripts run using C1 Fluidigm Open App chips (10-17um).
The open chromatin was transposed by Tn5 transposase. Cell specific barcode was integrated to tagmented DNA of each cell by PCR amplification with indexed primer. The amplified PCR produced was purified by Ampure XP beads and the purified ATACseq library was sent for sequencing.

tag: time-point


title: D10_STAR-RNA


title: D10R-10


title: D8-1_STAR-ATAC


title: D8_2A-96


title: D8_2A-95


title: D8_2A-93


title: D8_2A-92


title: D8_2A-91


title: D8_2A-94


title: D8_2A-9


title: D8_2A-90


title: D10R-16


title: D8_2A-86


title: D8_2A-87


title: D8_2A-83


title: D8_2A-84


title: D8_2A-85


title: D10R-11


title: D8_2A-82


title: D8_2A-89


title: D8_2A-8


title: D8_2A-77


title: D8_2A-80


title: D8_2A-79


title: D8_2A-78


title: D8_2A-75


title: D8_2A-74


title: D8_2A-81


title: D8_2A-72


title: D8_2A-71


title: D8_2A-76


title: D8_2A-73


title: D8_2A-69


title: D8_2A-70


title: D8_2A-7


title: D8_2A-88


title: D8_2A-67


title: D8_2A-66


title: D8_2A-68


title: D8_2A-65


title: D8_2A-64


title: D8_2A-63


title: D8_2A-62


title: D8_2A-57


title: D8_2A-59


title: D8_2A-6


title: D8_2A-56


title: D8_2A-58


title: D8_2A-55


title: D8_2A-54


title: D8_2A-53


title: D8_2A-52


title: D8_2A-50


title: D8_2A-49


title: D8_2A-5


title: D8_2A-61


title: D8_2A-46


title: D8_2A-48


title: D8_2A-44


title: D8_2A-43


title: D8_2A-45


title: D8_2A-41


title: D8_2A-42


title: D8_2A-40


title: D8_2A-4


title: D8_2A-60


title: D8_2A-38


title: D8_2A-37


title: D8_2A-30


title: D8_2A-36


title: D8_2A-31


title: D8_2A-34


title: D8_2A-35


title: D8_2A-3


title: D8_2A-51


title: D8_2A-33


title: D8_2A-32


title: D8_2A-29


title: D8_2A-27


title: D8_2A-28


title: D8_2A-47


title: D8_2A-25


title: D8_2A-39


title: PLNR9C-vehicle cardiomyocytes  biological replicate 1

city: Atlanta

first: Andrew

last: Antolic

state: Ga

address: 100 Woodruff Circle

department: School of Medicine Department of Cardiology

country: USA

institute: Emory University

description:
M4
PLN pooled cell RNAseq expression data

data_processing:
Sequencer operation, base calling and quality scoring was performed by Illumina NextSeq Control Software v2.0.2.1 (FC02062 and FC02142) or v2.1.0.31 (FC03324), and RTA v2.4.11.
Adapter trimming was performed by Skewer v0.1.125 (FC02062 and FC02142) or v0.2.2 (FC03324) in paired-end mode.
Trimmed sequences were aligned with STAR v2.4.1b to GRCm38_mm10 with parameters "--outStd BAM_SortedByCoordinate   --outSAMtype BAM   SortedByCoordinate --outSAMstrandField intronMotif   --outSJfilterReads Unique   --outFilterType BySJout   --outFilterMultimapNmax 1   --outFilterMismatchNmax 999   --outFilterMismatchNoverLmax 0.12   --outFilterIntronMotifs RemoveNoncanonical   --alignSJoverhangMin 300   --alignEndsType EndToEnd"
Genome_build: mm10
Supplementary_files_format_and_content: .txt format; contains, gene symbol, chromosomal location, gene description, raw read counts and normalized read counts (RPKM)

molecule: total RNA

organism: Mus musculus

source_name: Pooled cardiomyocyte RNA-seq

growth_protocol: Normal growth conditions

extract_protocol:
total RNA isolated by TRIzol
Nextera

treatment_protocol: JQ1 (50mg/kg) or vehicle

tag: strain

value: FVB

tag: genotype

tag: age at sacrifice

value: 16-weeks of age

tag: disease stage

value: DCM

tag: treatment

value: vehicle


title: Wild type-JQ1 cardiomyocytes  biological replicate 2

description:
M8
PLN pooled cell RNAseq expression data

value: Wild type


title: D8_2A-26


title: Wild type-JQ1 cardiomyocytes  biological replicate 1

description:
M7
PLN pooled cell RNAseq expression data


title: PLNR9C-vehicle cardiomyocytes  biological replicate 3

description:
M6
PLN pooled cell RNAseq expression data


title: Wild type-JQ1 cardiomyocytes  biological replicate 3

description:
M9
PLN pooled cell RNAseq expression data


title: D8_2A-23


title: PLNR9C-JQ1 cardiomyocytes  biological replicate 2

description:
M2
PLN pooled cell RNAseq expression data


title: D8_2A-22


title: PLNR9C-JQ1 cardiomyocytes  biological replicate 1

description:
M1
PLN pooled cell RNAseq expression data


title: PLNR9C-JQ1 cardiomyocytes  biological replicate 3

description:
M3
PLN pooled cell RNAseq expression data


title: Wild type-vehicle cardiomyocytes  biological replicate 3

description:
M12
PLN pooled cell RNAseq expression data


title: D8_2A-2


title: Wild type-vehicle cardiomyocytes biological replicate 1

description:
M10
PLN pooled cell RNAseq expression data


title: Wild type-JQ1 non-myocytes biological replicate 3

description:
F9
PLN pooled cell RNAseq expression data

source_name: Pooled cardiac non-myocyte RNA-seq


title: D8_2A-18


title: Wild type-JQ1 non-myocytes biological replicate 2

description:
F8
PLN pooled cell RNAseq expression data


title: Wild type-JQ1 non-myocytes biological replicate 1

description:
F7
PLN pooled cell RNAseq expression data


title: Wild type-vehicle cardiomyocytes biological replicate 2

description:
M11
PLN pooled cell RNAseq expression data


title: D8_2A-20


title: D8_2A-19


title: PLNR9C-vehicle cardiomyocytes  biological replicate 2

description:
M5
PLN pooled cell RNAseq expression data


title: PLNR9C-vehicle non-myocytes biological replicate 3

description:
F6
PLN pooled cell RNAseq expression data


title: D8_2A-16


title: D8_2A-15


title: D8_2A-13


title: D8_2A-12


title: D8_2A-14


title: PLNR9C-JQ1 non-myocytes biological replicate 2

description:
F2
PLN pooled cell RNAseq expression data


title: PLNR9C-JQ1 non-myocytes biological replicate 1

description:
F1
PLN pooled cell RNAseq expression data


title: D8_2A-11


title: PLNR9C-JQ1 non-myocytes biological replicate 3

description:
F3
PLN pooled cell RNAseq expression data


title: PLNR9C-vehicle non-myocytes biological replicate 1

description:
F4
PLN pooled cell RNAseq expression data


title: D8_2A-21


title: D8_2A-10


title: D8_1A-96


title: Wild type-vehicle non-myocytes biological replicate 3

description:
F12
PLN pooled cell RNAseq expression data


title: D8_1A-95


title: D8_2A-17


title: Wild type-vehicle non-myocytes biological replicate 2

description:
F11
PLN pooled cell RNAseq expression data


title: D8_1A-93


title: Wild type-vehicle 20wk biological replicate 3

description:
6651
PLN 20wk RNAseq exprssion data

source_name: Whole LV tissue bulk RNA-seq

value: 20-weeks of age


title: D8_2A-24


title: Wild type-JQ1 20wk biological replicate 3

description:
6647
PLN 20wk RNAseq exprssion data


title: D8_1A-92


title: Wild type-vehicle 20wk biological replicate 2

description:
6644
PLN 20wk RNAseq exprssion data


title: D8_1A-94


title: D8_1A-90


title: D8_1A-91


title: PLNR9C-vehicle non-myocytes biological replicate 2

description:
F5
PLN pooled cell RNAseq expression data


title: Wild type-vehicle 20wk biological replicate 1

description:
580
PLN 20wk RNAseq exprssion data


title: D8_1A-89


title: D8_1A-88


title: PLNR9C-vehicle 20wk biological replicate 2

description:
538
PLN 20wk RNAseq exprssion data


title: PLNR9C-vehicle 20wk biological replicate 3

description:
6643
PLN 20wk RNAseq exprssion data


title: D8_1A-87


title: Wild type-JQ1 20wk biological replicate 1

description:
492
PLN 20wk RNAseq exprssion data


title: D8_1A-85


title: PLNR9C-JQ1 20wk biological replicate 3

description:
657
PLN 20wk RNAseq exprssion data


title: D8_1A-84


title: PLNR9C-JQ1 20wk biological replicate 1

description:
500
PLN 20wk RNAseq exprssion data


title: PLNR9C-vehicle 20wk biological replicate 1

description:
537
PLN 20wk RNAseq exprssion data


title: Wild type-vehicle non-myocytes biological replicate 1

description:
F10
PLN pooled cell RNAseq expression data


title: D8_1A-83


title: D8_1A-82


title: D8_1A-80


title: Wild type-JQ1 20wk biological replicate 2

description:
6642
PLN 20wk RNAseq exprssion data


title: D8_1A-79


title: Wild type-JQ1 8wk biological replicate 2

description:
976
PLN 8wk RNAseq expression data

value: 8-weeks of age

value: preDCM


title: Wild type-vehicle 8wk biological replicate 2

description:
967
PLN 8wk RNAseq expression data


title: Wild type-JQ1 8wk biological replicate 1

description:
918
PLN 8wk RNAseq expression data


title: Wild type-JQ1 8wk biological replicate 3

description:
978
PLN 8wk RNAseq expression data


title: D8_1A-8


title: D8_1A-9


title: Wild type-vehicle 8wk biological replicate 1

description:
966
PLN 8wk RNAseq expression data


title: D8_1A-78


title: PLNR9C-vehicle 8wk biological replicate 3

description:
983
PLN 8wk RNAseq expression data


title: D8_1A-86


title: D8_1A-77


title: PLNR9C-vehicle 8wk biological replicate 2

description:
981
PLN 8wk RNAseq expression data


title: D8_1A-76


title: PLNR9C-JQ1 8wk biological replicate 3

description:
982
PLN 8wk RNAseq expression data


title: D8_1A-73


title: D8_1A-74


title: D8_1A-81


title: PLNR9C-JQ1 8wk biological replicate 1

description:
824
PLN 8wk RNAseq expression data


title: RARRXR1_SLOTv2_mESC_rep4_DpnII

city: Cambrdige

first: Jennifer

last: Hammelman

state: MA

address: 32 Vassar Street

institute: MIT

data_processing:
Reads were mapped to library phrases by taking the reverse complement to the raw read, where the first N nucleotides (between 70 and 100 based on the size of the designed phrase) are the designed variable phrase. Perfect matches were counted using a custom R script.
Supplementary_files_format_and_content: Raw read counts provided in file phrase_libraries_raw_counts.xlsx

source_name: mESC

growth_protocol: mESCs were maintained on gelatin-coated plates feeder-free in mESC media composed of Knockout DMEM (Life Technologies) supplemented with 15% defined fetal bovine serum (FBS) (HyClone), 0.1mM nonessential amino acids (NEAA) (Life Technologies), Glutamax (GM) (Life Technologies), 0.55mM 2 -mercaptoethanol (Sigma), 1X ESGRO LIF (Millipore), 5 nM GSK-3 inhibitor XV and 500 nM UO126.

extract_protocol:
DPNI: 10ug genomic DNA DPNII: 20ug genomic DNA
Library prep was performed by 3 successive PCRs. In the first PCR, the entire DpnI-digested genomic DNA was used in a 400 uL PCR rxn, and the entire DpnII-digested genomic DNA was used in a 800 uL PCR rxn. 13 cycles of PCR1 (Q5 UltraII mastermix, Ta=66, 60 second 72 deg extension per cycle) was performed. PCR 1 was purified using PCR purification in a single column, eluting in 50 uL. PCR2 was performed for 7 cycles (Q5 UltraII mastermix, Ta=66, 60 second 72 deg extension per cycle) using 22.5 uL of PCR1 product in a 100 uL reaction. PCR 2 was purified in a single column, eluting in 50 uL.  qPCR (Q5 UltraII mastermix with EvaGreen (Biotium), Ta=66, 60 second 72 deg extension per cycle) was used to determine PCR3 cycle counts. PCR3 was performed by subtracting 2-3 cycles from the Ct and using 2.5 uL of a mix of distinct indexed primers from the NEBNext Dual Index Kit for Illumina (New England Biolabs) using 22.5 uL PCR2 product in a 50 uL reaction volume (Q5 UltraII mastermix with EvaGreen (Biotium), Ta=66, 60 second 72 deg extension per cycle). PCR3 products were PCR-purified and Tapestation (Agilent) was used to quantify and pool samples for NGS.

treatment_protocol: Induction of Rarg-DamN126A expression was performed by treatment of mESCs or mESC-derived endoderm with 2 ug/mL Doxycycline (Sigma) for 24 hours prior to genomic DNA collection using the Purelink Genomic DNA miniprep kit (Life Technologies).

value: LoxP site-containing rtTA-expressing 129P2/OlaHsd mouse embryonic stem cells


title: PLNR9C-JQ1 8wk biological replicate 2

description:
979
PLN 8wk RNAseq expression data


title: D8_1A-72


title: RARRXR1_SLOTv2_mESC_rep2_DpnII


title: D8_1A-70


title: D8_1A-71


title: RARRXR1_SLOTv2_mESC_rep3_DpnII


title: D8_1A-7


title: D8_1A-69


title: RARRXR1_SLOTv2_mESC_rep1_DpnII


title: RARRXR1_SLOTv2_mESC_rep4_DpnI


title: RARRXR1_SLOTv2_mESC_rep3_DpnI


title: D8_1A-67


title: D8_1A-66


title: Wild type-vehicle 8wk biological replicate 3

description:
980
PLN 8wk RNAseq expression data


title: RARRXR1_SLOTv2_mESC_rep1_DpnI


title: RARRXR1_SLOTv2_mESC_rep2_DpnI


title: D8_1A-75


title: PLNR9C-vehicle 8wk biological replicate 1

description:
852
PLN 8wk RNAseq expression data


title: RARRXR_SLOTv2_mEND_rep2_DpnII

source_name: mEND

treatment_protocol:
To induce differentiation, cells were grown for 48 hours in mESC media without GSK3 inhibitor XV and UO126 and then seeded at 10^4 cells/cm2 in mESC media without GSK3 inhibitor XV and UO126. After 24 hours, media was replaced with serum-free differentiation media: Advanced DMEM supplemented with N-2, B27 Supplement without vitamin A, and Glutamax (Thermo Fisher). After 24 hours, media was replaced with differentiation media: Advanced DMEM with 2% ES-tested FBS and Glutamax. To induce endoderm differentiation, cells were treated for 24 hours in differentiation media with 50 ng/mL E. coli-derived Activin A (Peprotech) for 24 hours to produce mesendoderm, then cells were fed with Advanced DMEM with 2% FBS, Glutamax, 50 ng/mL Activin A and 1 µM Dorsomorphin (Sigma) for 48 hours.
Induction of Rarg-DamN126A expression was performed by treatment of mESCs or mESC-derived endoderm with 2 ug/mL Doxycycline (Sigma) for 24 hours prior to genomic DNA collection using the Purelink Genomic DNA miniprep kit (Life Technologies).


title: D8_1A-68


title: RARRXR_SLOTv2_mEND_rep2_DpnI


title: D8_1A-64


title: D8_1A-65


title: RARRXR_SLOTv2_mEND_rep1_DpnII


title: PLNR9C-JQ1 20wk biological replicate 2

description:
573
PLN 20wk RNAseq exprssion data


title: D8_1A-62


title: RARRXR_SLOTv2_mEND_rep1_DpnI


title: D8_1A-61


title: D8_1A-63


title: SL-24

city: Houston

first: Sara

last: Lovisa

state: TX

address: 1901 East Road

department: Cancer Biology

institute: MD Anderson Cancer Center

data_processing:
Base calling: Illumina bcl2fastq-1.8.4
RNA QC: RNA-SeQC_v1.1.7.jar
Reference genome allignment: mm10
Reads quantification: HTSeq
Normalization and differential expression analysis: DESeq2
Genome_build: mm10
Supplementary_files_format_and_content: text files inclusing raw and normalized counts

source_name: Myc GGT–cKO UUO

extract_protocol:
Kidneys were removed and flash frozen in liquid nitrogen. Total RNA was extracted from one eighth of each kidneys using TRIzol reagent and extraction protocol.
Libraries were generated using the Illumina TrueSeq stranded Whole Transcriptome RNAseq Library kit
whole transcriptome RNA-Seq (Illumina NextSeq500, in the 2x75bp paired-end sequence reads configuration)

tag: group id

value: mixed C57BL6, Balb/c

tag: tissue

value: kidney

tag: disease state

value: UUO kidney

tag: age (endpoint)

value: 11-12 weeks

value: + FF (GGT-Cre;Myc)


title: SL-22


title: SL-23


title: D8_1A-59


title: D8_1A-58


title: SL-14

source_name: Snail EndMT–cKO UUO

value: 12 weeks

value: + FF (Cdh5-CreERT2;Snail)


title: D8_1A-6


title: SL-11

source_name: Twist EndMT–cKO UUO

value: mixed C57BL6, 129sv, Balb/c

value: + FF (Cdh5-CreERT2;Twist)


title: SL-13


title: D8_1A-55


title: SL-15


title: D8_1A-54


title: SL-12


title: D8_1A-53


title: SL-10


title: SL-9

source_name: WT UUO

value: - FF (Cdh5-CreERT2;Twist)


title: D8_1A-52


title: SL-8

value: + ++ (Cdh5-CreERT2;Twist)


title: D8_1A-50


title: SL-7


title: D8_1A-5


title: D8_1A-49


title: D8_1A-60


title: SL-4

source_name: contralateral

value: contralateral kidney


title: SL-6


title: D8_1A-48


title: SL-5


title: SL-3

source_name: healthy

value: healthy kidney


title: D8_1A-56


title: SL-2/2


title: D8_1A-57


title: SL-1


title: D8_1A-45


title: D8_1A-43


title: D8_1A-44


title: D8_1A-41


title: D8_1A-42


title: D8_1A-51


title: clone_SP#128_rep1

city: Dallas

first: Joseph

middle: S

last: Takahashi

address: 5323 Harry Hines Blvd., NA4.118

department: HHMI, Neuroscience

institute: University of Texas Southwestern Medical Center

data_processing:
Raw reads were tested for quality using FastQC and trimmed with Trim Galore
The trimmed reads were aligned to mm10 using Bismark.
The CpG reports from Bismark methylation extractor were then analyzed using methylKit. We used default settings to discard bases that had coverage below 10X and/or more than 99.9th percentile of coverage in each sample.
Genome_build: mm10
Supplementary_files_format_and_content: Bigwig files generated using Bismark showing DNA methylation density.

source_name: Immortalized ear fibroblast clone#128

growth_protocol: Immortalized mouse ear fibroblast cells from male mice carrying Per2::luc bioluminescence reporter were maintained in DMEM supplemented with 10% FBS.

extract_protocol:
Genomic DNA was purified using a PureLink™ Genomic DNA Mini Kit.
Libraries were made using the Premium Reduced Representation Bisulfite Sequencing (RRBS) Kit (Diagenode) following the manufacturer’s instruction.

treatment_protocol: Confluent cells were synchronized with 100 nM dexamethasone for 2 hr, then changed to medium with 2% FBS. Cells were collected at  the first peak after synchronization based on Per2::luc bioluminescence signal. We collected 2 replicates for each clonal cell lines.

value: Ear


title: D8_1A-40


title: clone_SP#137_rep2

source_name: Immortalized ear fibroblast clone#137


title: clone_LP#114_rep1

source_name: Immortalized ear fibroblast clone#114


title: clone_LP#108_rep2

source_name: Immortalized ear fibroblast clone#108


title: D8_1A-39


title: clone_SP#128_rep2


title: D8_1A-38


title: D8_1A-37


title: clone_SP#137_rep1


title: clone_LP#108_rep1


title: D8_1A-47


title: clone_LP#86_rep1

source_name: Immortalized ear fibroblast clone#86


title: D8_1A-35

source_name: Umblical Cord Blood Cells Undergoing Differentiation


title: D8_1A-36


title: D8_1A-46


title: clone_LP#86_rep2


title: clone_SP#80_rep2

source_name: Immortalized ear fibroblast clone#80


title: clone_SP#80_rep1


title: clone_LP#74_rep2

source_name: Immortalized ear fibroblast clone#74


title: clone_LP#74_rep1


title: D8_1A-34


title: D8_1A-33


title: clone_SP#44_rep2

source_name: Immortalized ear fibroblast clone#44


title: clone_LP#114_rep2


title: D8_1A-31


title: clone_SP#44_rep1


title: D8_1A-32


title: D8_1A-4


title: D8_1A-30


title: D8_1A-3


title: clone_LP#34_rep1

source_name: Immortalized ear fibroblast clone#34


title: clone_LP#34_rep2


title: D8_1A-29


title: clone_SP#33_rep2

source_name: Immortalized ear fibroblast clone#33


title: D8_1A-28


title: clone_SP#33_rep1


title: D8_1A-26


title: D8_1A-25


title: D8_1A-24


title: D8_1A-27


title: D8_1A-22


title: D8_1A-23


title: D8_1A-21


title: D8_1A-2


title: D8_1A-18


title: D8_1A-19


title: D8_1A-17


title: D8_1A-16


title: 18678_LIN28A_K562

city: Ithaca

first: B. Franklin

last: Pugh

state: New York

address: 465 Biotechnology Building

department: Molecular Biology and Genetics

institute: Cornell University

data_processing:
Library strategy: ChIP-exo
ChIP-exo reads were aligned using bwa-mem with the following settings: -v (1)  -T (30) -h (5)
Remove duplicate reads and generate a deduplicated BAM file. using picard MarkDuplicates and samtools
peaks were called using ChExMix version: 0.45 with the following setting: q-value (0.1)
Genome_build: hg19
Supplementary_files_format_and_content: bed format, ChExMix peak calls

growth_protocol: K562 were grown in suspension using IMDM media and periodically checked for mycoplasma contamination. HepG2 and MCF7 were grown as adherent cells in DMEM media.

extract_protocol:
Lysates were clarified from sonicated nuclei and TF-DNA complexes were isolated with antibody.
Libraries were prepared for sequencing using standard Illumina protocols with modifications; Reference paper:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3813302/

treatment_protocol: MCF7 cells were additionally grown in phenol red-free DMEM and treated with Beta-estradiol 30 min prior to cell harvest.

tag: antibody


title: 23043_LHX5_K562


title: 23042_RNF113B_K562


title: 23517_SCML2-_K562


title: 23516_ASCL4-_K562


title: 18675_BACH2_K562


title: 18676_ZNF792_K562


title: D8_1A-14


title: 18679_EZH2_K562


title: 26445_ZNF296_K562


title: 18674_HDAC8_K562


title: 26444_GRHL1_K562


title: 23513_EEA1-_K562


title: 18677_MZF1_K562


title: 18671_HHEX_K562


title: 18672_ZKSCAN2_K562


title: 23047_OVOL2_K562


title: D8_1A-13


title: D8_1A-12


title: 23049_HHEX_K562


title: 23510_PUM2-_K562


title: D8_1A-10


title: D8_1A-20


title: D8_1A-11


title: D8_1A-15


title: 24049_SKIL-_K562


title: D6A-96


title: 24048_ZNF358-_K562


title: 24044_SCAND1-_K562


title: D6A-94


title: D6A-92


title: D6A-88


title: 24047_ZNF549-_K562


title: D6A-93


title: D6A-87


title: D6A-89


title: 24042_WDHD1-_K562


title: 24040_ZNF623-_K562


title: D6A-95


title: D6A-9


title: D6A-91


title: 24045_RBMS2-_K562


title: D6A-90


title: 24046_NFYB-_K562


title: 24041_ZNF689-_K562


title: D6A-86


title: 22948_ATF2_K562


title: D6A-84


title: 22940_MIS18BP1_K562


title: 24043_ZNF746-_K562


title: D6A-82


title: D6A-85


title: 22947_GTF2B_K562


title: D6A-83


title: 22946_ZUFSP_K562


title: 22944_DRAP1_K562


title: 22945_YBX2_K562


title: D6A-80


title: D6A-81


title: 22942_PPP5C_K562


title: D6A-8


title: D6A-78


title: D6A-77


title: 23333_ZMYM3_K562


title: 17456_LIN28A_K562


title: 17455_MZF1_K562


title: D6A-79


title: 17452_HDAC8_K562


title: D6A-76


title: 17451_ZNF277_K562


title: 17458_FOXL2_K562


title: D6A-74


title: 22048_RUVBL1-_MCF7


title: 17453_BACH2_K562


title: 17454_ZNF792_K562


title: D6A-72


title: 22049_RUNX2-_MCF7


title: D6A-71


title: D6A-75


title: D6A-70


title: 22043_TERF1-_MCF7


title: 22042_SOX3-_MCF7


title: 22040_FOSL2-_MCF7


title: D6A-7


title: D6A-69


title: 22046_RFX6-_MCF7


title: 17450_ZKSCAN2_K562


title: 22047_ZBTB2-_MCF7


title: D6A-67


title: 22045_YY2-_MCF7


title: D6A-73


title: 19538_DGCR8_K562


title: 19539_USP7_K562


title: D6A-65


title: D6A-64


title: D6A-66


title: 19535_SCAND3_K562


title: D6A-63


title: 19534_ZBTB32_K562


title: D6A-61


title: 19536_HAND2_K562


title: D6A-60


title: D6A-62


title: D6A-6


title: 19537_ANKHD1_K562


title: 19532_MBNL3_K562


title: 19533_MAT2B_K562


title: D6A-68


title: 23799_ZNF648-_K562


title: D6A-58


title: D6A-57


title: D6A-56


title: 23798_ZNF483-_K562


title: 22044_HEY2-_MCF7


title: 23793_ZNF526-_K562


title: D6A-55


title: 23792_ZHX3-_K562


title: D6A-53


title: D6A-54


title: 23794_LCOR-_K562


title: 23797_ZNF408-_K562


title: D6A-52


title: D6A-51


title: 23796_SFMBT1-_K562


title: D6A-50


title: D6A-5


title: D6A-49


title: D6A-59


title: 19046_ABTB1_K562


title: 19045_HOXB6_K562


title: D6A-47


title: 19044_SMAD2_K562


title: D6A-48


title: 19049_Smad3_K562


title: D6A-45


title: D6A-44


title: 23317_PRMT7_K562


title: 23791_THAP9-_K562


title: 23795_ZIM2-_K562


title: D6A-42


title: 26426_ZNF800_K562


title: D6A-46


title: 19048_SIRT2_K562


title: 26427_THAP7_K562


title: D6A-41


title: 26428_ZBTB14_K562


title: D6A-40


title: D6A-4


title: 26429_ZNF410_K562


title: D6A-39


title: D6A-38


title: 19047_ZNF574_K562


title: 23318_PBX4_K562


title: 22223_PRRX2_K562


title: 22222_FOXP4_K562


title: D6A-37


title: 22220_ZKSCAN2_K562


title: D6A-36


title: D6A-34


title: 22221_TAX1BP1_K562


title: D6A-43


title: 22226_USF1_K562


title: D6A-35


title: D6A-33


title: D6A-32


title: 18652_INSM1_K562


title: 18650_HAND1_K562


title: D6A-30


title: D6A-3


title: D6A-31


title: 23573_ZBTB7C_K562


title: D6A-29


title: D6A-28


title: 23572_TSC22D3_K562


title: 23570_MYCN_K562


title: 23319_TBX19_K562


title: 23575_POU3F2_K562


title: D6A-26


title: D6A-25


title: D6A-24


title: 23574_KLF15_K562


title: 22225_NR0B1_K562


title: 23579_LEUTX_K562


title: 23578_HAND1_K562


title: 18303_GRHL2_HepG2


title: 23776_PHF17-_K562


title: D6A-20


title: 23775_ZNF550-_K562


title: 23777_ZC3H15-_K562


title: D6A-21


title: 23772_PRDM7-_K562


title: D6A-19


title: 23771_PROX2-_K562


title: 23779_ZNF134-_K562


title: D6A-18


title: D6A-27


title: 23321_NFE2L2_K562


title: D6A-17


title: 23896_TGIF1-_K562


title: 23895_KLF1-_K562


title: D6A-23


title: D6A-13


title: D6A-14


title: 23892_SIRT1-_K562


title: D6A-15


title: D6A-22


title: 18649_STAT4_K562


title: D6A-11


title: 18648_LEUTX_K562


title: 23773_ZNF846-_K562


title: D6A-12


title: D6A-10


title: 23893_MLXIP-_K562


title: 18319_SMAD7_HepG2


title: D6A-2


title: 18316_HNF4A_HepG2


title: D12A-94


title: 18318_PCGF3_HepG2


title: D6_STAR-ATAC


title: D12A-96


title: 18315_FOXA3_HepG2


title: 23327_NR2C1_K562


title: 23890_ZNF264-_K562


title: 18646_FOXL1_K562


title: D12A-95


title: 22957_TFAP2C_K562


title: D6A-16


title: 22950_NFIA_K562


title: D12A-93


title: 18313_RFX3_HepG2


title: 18644_PRDM8_K562


title: D12A-91


title: D12A-92


title: D12A-86


title: 22958_JUNB_K562


title: 22953_MXI1_K562


title: D12A-90


title: D12A-83


title: 17440_RUVBL1-_MCF7


title: D12A-9


title: D12A-82


title: D12A-89


title: D12A-88


title: 17441_RUNX2-_MCF7


title: D12A-87


title: D12A-81


title: 18109_GRHL2_MCF7


title: 22952_ECD_K562


title: 18103_PAX2_K562


title: D12A-8


title: D12A-85


title: 26300_Dcp2_K562


title: D12A-84


title: D12A-76


title: 17449_HHEX_K562


title: 17445_NRF1_MCF7


title: D12A-77


title: D12A-80


title: D12A-78


title: D12A-74


title: D12A-75


title: D12A-79


title: 26304_SMAD2_K562


title: 23549_ZNF438_K562


title: D12A-73


title: 26307_LHX2_K562


title: D12A-71


title: 26301_MEF2D_K562


title: 26308_NPM3_K562


title: D12A-70


title: 23780_SNW1-_K562


title: D12A-7


title: 23781_ZNF280A-_K562


title: 26302_ZNF543_K562


title: 23786_SP110-_K562


title: 26305_BOLA3_K562


title: D12A-68


title: 23787_ZNF354B-_K562


title: D12A-67


title: D12A-66


title: 23784_ZNF597-_K562


title: 23785_ZNF428-_K562


title: D12A-65


title: D12A-64


title: 26306_NFKB2_K562


title: 22589_ERG_K562


title: 18104_TP73_K562


title: D12A-63


title: D12A-72


title: D12A-62


title: 22781_ZNF8_K562


title: 22780_LHX2_K562


title: D12A-6


title: 22783_TRIM24_K562


title: 22785_ARNT2_K562


title: 22588_SMURF1_K562


title: 22782_SNAPC4_K562


title: D12A-61


title: D12A-59


title: D12A-69


title: D12A-58


title: 22784_WHSC1_K562


title: 22787_MEN1_K562


title: D12A-57


title: 22786_KLF16_K562


title: D12A-56


title: 22789_NFATC1_K562


title: 22788_ID1_K562


title: D12A-55


title: D12A-54


title: 19079_TRIM28_K562


title: D12A-53


title: 19075_PBX1_K562


title: D12A-5


title: 19077_USF1_K562


title: D12A-52


title: D12A-51


title: 19071_RARB_K562


title: D12A-50


title: 19074_Smad4_K562


title: D12A-60


title: 19070_ZBTB18_K562


title: 19072_HOXC8_K562


title: D12A-46


title: D12A-47


title: D12A-48


title: D12A-49


title: D12A-45


title: 23560_HMGA1_K562


title: 19073_HMGA1_K562


title: 23561_SMAD2_K562


title: 23566_USF1_K562


title: D12A-43


title: D12A-44


title: D12A-42


title: D12A-40


title: 23569_RUNX2_K562


title: D12A-41


title: D12A-4


title: 23568_ZNF165_K562


title: D12A-39


title: 23769_ZNF24-_K562


title: D12A-38


title: D12A-37


title: 23767_BATF3-_K562


title: 24497_GTF2IRD2_K562


title: 23768_E4F1-_K562


title: 23562_MEIS3_K562


title: D12A-36


title: D12A-35


title: 24496_ZFP28_K562


title: D12A-34


title: 24494_USF1_K562


title: 24491_THAP4_K562


title: 23564_BSX_K562


title: D12A-32


title: 24492_KHDRBS3_K562


title: 24499_HDGFL1_K562


title: D12A-31


title: 24493_ZFAT_K562


title: 23565_DBX2_K562


title: D12A-30


title: 24498_ZNF783_K562


title: D12A-29


title: 19005_NKX2-5_K562


title: D12A-3


title: D12A-28


title: 19006_ZNF192_K562


title: D12A-27


title: 19000_PBX4_K562


title: D12A-26


title: 19001_HES3_K562


title: D12A-25


title: 19002_ZNF264_K562


title: 19007_ZNF746_K562


title: D12A-33


title: D12A-24


title: 19003_ZNF230_K562


title: D12A-22


title: D12A-23


title: 18308_ZNF444_HepG2


title: 18309_HLF_HepG2


title: D12A-21


title: 18300_DNMT3A_HepG2


title: D12A-19


title: D12A-2


title: 18302_NR2C1_HepG2


title: 18301_BCL6_HepG2


title: 18651_EBF1_K562


title: D12A-20


title: 19004_ZFP90_K562


title: D12A-17


title: D12A-18


title: D12A-16


title: 18305_ID2_HepG2


title: D12A-15


title: D12A-14


title: D12A-13


title: D12A-12


title: 18307_PROX1_HepG2


title: D12A-11


title: 24066_USF1_K562


title: D12_STAR-ATAC


title: 24065_ZKSCAN7-_K562


title: 24064_ZNF48-_K562


title: 24062_SIX5-_K562


title: 24063_DDX43-_K562


title: D10A-96


title: D10A-95


title: 22961_USF1_K562


title: 22960_PGBD1_K562


title: D10A-93


title: D12A-10


title: D10A-94


title: 24061_SCRT1-_K562


title: 18304_PUM1_HepG2


title: 22963_FOSB_K562


title: D10A-92


title: 22964_Bmi1_K562


title: 22965_FoxO3_K562


title: 18306_GATA4_HepG2


title: D10A-90


title: D10A-91


title: D10A-9


title: D10A-89


title: 22966_MBD2_K562


title: D10A-87


title: D10A-88


title: 22968_DMTF1_K562


title: 22969_MYCL1_K562


title: D10A-86


title: 17439_ZBTB2-_MCF7


title: 24060_CREB3L4-_K562


title: 17438_RFX6-_MCF7


title: D10A-84


title: 17432_FOSL2-_MCF7


title: D10A-85


title: 17436_HEY2-_MCF7


title: D10A-81


title: D10A-80


title: D10A-8


title: 17435_TERF1-_MCF7


title: 22967_ZNF598_K562


title: D10A-79


title: 26313_MLLT3_K562


title: 17434_SOX3-_MCF7


title: 26312_TFCP2_K562


title: D10A-78


title: 26310_MAFG_K562


title: 26311_CIZ1_K562


title: D10A-74


title: 26316_PRDM16_K562


title: D10A-75


title: D10A-77


title: 26317_KLF16_K562


title: 17437_YY2-_MCF7


title: 26314_ZNF48-_K562


title: D10A-83


title: 26315_ZZZ3_K562


title: D10A-73


title: 26318_HOXB9_K562


title: D10A-82


title: D10A-71


title: D10A-72


title: 26319_ATAD2_K562


title: D10A-70


title: D10A-7


title: 22792_USF1_K562


title: 22790_STAT5A_K562


title: D10A-68


title: D10A-67


title: D10A-69


title: D10A-66


title: D10A-76


title: 22795_TADA3_K562


title: 22799_Nab2_K562


title: 22794_MXD3_K562


title: D10A-65


title: 19069_FOS_K562


title: D10A-63


title: 19067_NFIA_K562


title: 19061_HOXB2_K562


title: D10A-61


title: 19060_TFAP2A_K562


title: D10A-62


title: D10A-60


title: 23590_USF1_K562


title: 24488_ZNF496_K562


title: D10A-6


title: D10A-59


title: 22791_HESX1_K562


title: 22885_USF1_K562


title: 22884_ZMYM3_K562


title: D10A-57


title: D10A-56


title: D10A-54


title: 22881_SATB1_K562


title: 22880_ETS1_K562


title: 18685_SOX5_K562


title: D10A-53


title: D10A-58


title: D10A-64


title: D10A-55


title: 18689_STAT3_K562


title: 18688_DEAF1_K562


title: 22882_BATF_K562


title: D10A-52


title: 18687_CLOCK_K562


title: D10A-50


title: D10A-49


title: 18686_ZBTB5_K562


title: D10A-48


title: D10A-5


title: 18681_VENTX_K562


title: D10A-45


title: D10A-46


title: 18683_ZUFSP_K562


title: 18682_Esrra_K562


title: 22972_STAT1_K562


title: 22970_PDX1_K562


title: 22883_NKX2-5_K562


title: D10A-43


title: D10A-44


title: 22971_MYCL1_K562


title: D10A-51


title: D10A-42


title: 22974_YY1_K562


title: 22975_TFAP2D_K562


title: 22976_HEY2_K562


title: D10A-41


title: 22977_SAMD4B_K562


title: D10A-4


title: D10A-40


title: 18684_CDC5L_K562


title: 18680_FOXL2_K562


title: D10A-47


title: D10A-36


title: D10A-35


title: D10A-37


title: D10A-38


title: 22979_NEDD4L_K562


title: D10A-34


title: 24128_SHOX-_K562


title: 24127_PRMT6-_K562


title: 24126_ANKZF1-_K562


title: D10A-33


title: 24125_ZBTB7B-_K562


title: D10A-39


title: 24124_ZNF648-_K562


title: D10A-32


title: 24121_SFMBT1-_K562


title: D10A-30


title: D10A-31


title: D10A-3


title: 24122_ZNF408-_K562


title: D10A-29


title: 24123_ZNF483-_K562


title: 24129_RPS6KA5-_K562


title: 17426_ZNF217-_MCF7


title: 17425_WHSC1-_MCF7


title: 24120_ZIM2-_K562


title: 17427_PRDM4-_MCF7


title: D10A-27


title: D10A-26


title: D10A-28


title: 17420_IRX5-_MCF7


title: 17421_SOX4-_MCF7


title: D10A-25


title: D10A-23


title: 17422_SMARCC2-_MCF7


title: D10A-24


title: D10A-21


title: D10A-22


title: 17423_YY1_MCF7


title: 28309_GABPA-_K562


title: 28308_NFIA-_K562


title: 17428_GTF2I-_MCF7


title: D10A-20


title: D10A-19


title: D10A-18


title: 22187_ZNF8_K562


title: D10A-17


title: D10A-16


title: 22184_ESRP2_K562


title: D10A-15


title: D10A-14


title: 22181_ZKSCAN3_K562


title: D10_STAR-ATAC


title: D10A-11


title: 22186_LHX2_K562


title: 22185_GBX1_K562


title: D10A-2


title: 19012_ZBTB16_K562


title: 19011_ZNF23_K562


title: 19018_FOXB2_K562


title: JurkatR-94

source_name: Jurkat

growth_protocol: Jurkat, Clone E6-1 (ATCC® TIB-152™) were maintained in RPMI medium, supplemented with 10% Fetal Bovine Serum (Gibco). JK-1 (ACC 347) were maintained in RPMI1640 medium supplemented with 20% Fetal Bovine Serum (Gibco).

extract_protocol:
Cells were trypsinized and single cell suspensions were harvested for STAR Scripts run using C1 Fluidigm Open App chips (10-17um).
The concentration of amplified cDNA was measured by high sensitivity bioanalyzer chips and diluted to required range of cDNA for following library preparation steps. STAR mRNAseq libraries were prepared using Nextera XT DNA Library Preparation Kit (FC-131-1096) following “Using C1 to Generate Single-Cell cDNA Libraries for mRNA Sequencing” manual.

tag: cell type

value: Jurkat


title: JurkatR-96


title: JurkatR-92


title: 22183_GLI1_K562


title: 19015_DBX2_K562


title: 19016_HDAC7_K562


title: 22182_ZNF410_K562


title: D10A-10


title: 22180_MED21_K562


title: JurkatR-93


title: 22189_QKI_K562


title: JurkatR-91


title: D10A-13


title: 19014_ZNF770_K562


title: 19013_PROX2_K562


title: D10A-12


title: JurkatR-9


title: 19019_NR5A1_K562


title: JurkatR-90


title: 18120_TP73_MCF7


title: 22188_BBX_K562


title: JurkatR-95


title: JurkatR-89


title: 19127_SYAP1_K562


title: JurkatR-88


title: 19126_HMGXB4_K562


title: 19125_USF1_K562


title: JurkatR-86


title: JurkatR-87


title: 19123_GTF2H1_K562


title: 19010_NEUROG3_K562


title: JurkatR-85


title: 19122_PHF19_K562


title: 19120_ZNF804a_K562


title: 19128_MBNL3_K562


title: JurkatR-84


title: JurkatR-83


title: 19129_RFXANK_K562


title: 23589_TCF25_K562


title: JurkatR-81


title: JurkatR-82


title: 23588_Taf10_K562


title: 23581_HDAC7_K562


title: 23582_CASP8AP2_K562


title: JurkatR-78


title: JurkatR-8


title: JurkatR-79


title: JurkatR-80


title: JurkatR-77


title: JurkatR-76


title: 23583_FoxC2_K562


title: JurkatR-75


title: JurkatR-74


title: 23584_CBX5_K562


title: 23586_USP16_K562


title: JurkatR-73


title: JurkatR-72


title: 23587_MXD4_K562


title: JurkatR-71


title: 22617_PPARD_K562


title: 23585_SCML4_K562


title: 22616_CREB5_K562


title: 22615_TCEAL8_K562


title: 23580_BCL6_K562


title: JurkatR-7


title: 22614_SPIC_K562


title: JurkatR-67


title: JurkatR-69


title: 22611_USF1_K562


title: JurkatR-70


title: JurkatR-66


title: 22613_TEAD4_K562


title: 22618_ZNF202_K562


title: 23035_USF1_K562


title: 22619_ONECUT2_K562


title: 23036_SMURF1_K562


title: JurkatR-62


title: JurkatR-63


title: 22610_CEBPB_K562


title: JurkatR-61


title: 23037_ERG_K562


title: JurkatR-60


title: JurkatR-6


title: 23038_ZNF18_K562


title: 18327_USF1_HepG2


title: JurkatR-59


title: 18324_SFMBT2_HepG2


title: JurkatR-68


title: JurkatR-58


title: 18325_ZNF556_HepG2


title: 18322_AKNA_HepG2


title: JurkatR-57


title: JurkatR-56


title: JurkatR-65


title: JurkatR-55


title: JurkatR-54


title: 18323_T_HepG2


title: 18320_ZKSCAN1_HepG2


title: JurkatR-53


title: 18321_PHF10_HepG2


title: 18698_BACH1_K562


title: JurkatR-52


title: JurkatR-51


title: 18699_HDAC6_K562


title: 18697_NFX1_K562


title: JurkatR-50


title: JurkatR-5


title: 18696_GTF2A1_K562


title: 18694_DMTF1_K562


title: 23039_SOX12_K562


title: JurkatR-49


title: 18695_TERF2_K562


title: JurkatR-48


title: JurkatR-47


title: JurkatR-46


title: 18692_DDIT3_K562


title: JurkatR-45


title: 18693_SNAI3_K562


title: 18690_HDGF_K562


title: 18691_NFATC3_K562


title: JurkatR-44


title: JurkatR-43


title: 22984_ZBTB5_K562


title: 22985_USF1_K562


title: 22981_RELA_K562


title: 22982_MEF2B_K562


title: 22980_PRDM4_K562


title: JurkatR-39


title: JurkatR-4


title: 24130_ZHX2-_K562


title: JurkatR-38


title: 24131_CC2D1A-_K562


title: 24138_USF1_K562


title: 24132_ZNF585B-_K562


title: JurkatR-37


title: JurkatR-35


title: 24134_YBX3-_K562


title: JurkatR-36


title: 17410_MAFB-_MCF7


title: JurkatR-33


title: 17411_GRHL1_MCF7


title: 17413_ESR1-_MCF7


title: JurkatR-32


title: JurkatR-31


title: JurkatR-30


title: 17412_ZNF467-_MCF7


title: JurkatR-42


title: JurkatR-41


title: JurkatR-40


title: JurkatR-34


title: 17415_ID4-_MCF7


title: JurkatR-29


title: 17414_HSF1-_MCF7


title: 17416_RXRA-_MCF7


title: JurkatR-28


title: JurkatR-27


title: 24135_SMARCC2-_K562


title: 17363_NRF1_K562


title: 17418_ZNF354A-_MCF7


title: JurkatR-25


title: 17366_GRHL2_K562


title: JurkatR-24


title: 17365_YY1_K562


title: JurkatR-23


title: 17364_USF1_K562


title: JurkatR-21


title: 23910_DVL2-_K562


title: 23911_USF1_K562


title: JurkatR-2


title: 23916_ZNF23_K562


title: 23917_ELF2_K562


title: JurkatR-20


title: JurkatR-3


title: JurkatR-18


title: 23915_SOX9_K562


title: JurkatR-19


title: 17419_ISL1-_MCF7


title: JurkatR-26


title: 23919_NCOA3_K562


title: JurkatR-17


title: 23914_ETS2_K562


title: JurkatR-16


title: 23918_ZEB2_K562


title: JurkatR-14


title: 22179_ZZZ3_K562


title: JurkatR-15


title: JurkatR-12


title: JurkatR-13


title: 22778_MED21_K562


title: JurkatR-22


title: 22776_GLIS3_K562


title: 22178_GLIS3_K562


title: Jurkat_STAR-RNA


title: JurkatR-11


title: JurkatR-10


title: JK1R-94


title: JK1R-96


title: 22190_SNAPC4_K562


title: JK1R-95


title: 22192_WHSC1_K562


title: 22191_TRIM24_K562


title: 22193_ARNT2_K562


title: JK1R-93


title: JK1R-92


title: 22194_KLF16_K562


title: JK1R-91


title: 22195_MEF2D_K562


title: 22779_ZKSCAN3_K562


title: JK1R-90


title: 22196_MEN1_K562


title: JK1R-9


title: 22197_ID1_K562


title: 26464_ZNF335_K562


title: 22777_ZZZ3_K562


title: 22198_ZXDC_K562


title: 22199_NFATC1_K562


title: JK1R-87


title: JK1R-88


title: 26461_MEN1_K562


title: JK1R-89


title: 19009_ZSCAN22_K562


title: JK1R-84


title: JK1R-81


title: 26466_ZNF354B_K562


title: JK1R-85


title: 26462_KLF7_K562


title: JK1R-86


title: 19008_ZFP41_K562


title: 26463_FOXM1_K562


title: 23829_THAP4_K562


title: JK1R-83


title: JK1R-82


title: 26467_MXD3_K562


title: 26460_TADA2A_K562


title: JK1R-8


title: JK1R-80


title: JK1R-79


title: JK1R-78


title: JK1R-77


title: 26465_SIRT2_K562


title: JK1R-74


title: JK1R-72


title: 23821_TARBP2_K562


title: 19131_HDAC10_K562


title: 23828_ZNF556_K562


title: JK1R-76


title: 23826_FOSL1_K562


title: 23827_THAP5_K562


title: 23824_E2F8_K562


title: 26468_USF1_K562


title: JK1R-70


title: JK1R-71


title: 19130_GTF2E1_K562


title: 19133_SCXA_K562


title: 19132_NR2F1_K562


title: JK1R-75


title: JK1R-69


title: JK1R-73


title: JK1R-64


title: JK1R-67


title: 19134_MAT2B_K562


title: JK1R-7


title: JK1R-68


title: JK1R-66


title: JK1R-65


title: 19137_HAND2_K562


title: 19136_SCAND3_K562


title: 19138_ANKHD1_K562


title: 22600_KLF10_K562


title: 22601_OVOL2_K562


title: 23822_ZNF496_K562


title: JK1R-60


title: 22602_PIKFYVE_K562


title: 22605_ZNF81_K562


title: 19135_ZBTB32_K562


title: JK1R-58


title: JK1R-63


title: JK1R-62


title: 19139_DGCR8_K562


title: JK1R-61


title: JK1R-6


title: 22603_TRIM28_K562


title: JK1R-59


title: 22604_HHEX_K562


title: JK1R-55


title: JK1R-53


title: 28261_RXRG-_K562


title: JK1R-57


title: JK1R-56


title: 18759_ZKSCAN1_HepG2


title: 22606_E2F6_K562


title: JK1R-52


title: JK1R-54


title: 22609_MEF2A_K562


title: 22607_ZNF446_K562


title: 28262_USF1_K562


title: 18758_SMAD7_HepG2


title: JurkatR-64


title: 18755_HNF4A_HepG2


title: JK1R-46


title: 18754_FOXA3_HepG2


title: JK1R-50


title: JK1R-48


title: 18757_PCGF3_HepG2


title: 28260_ELF3-_K562


title: 18756_SMAD9_HepG2


title: JK1R-5


title: JK1R-45


title: JK1R-43


title: 22608_BOLA3_K562


title: JK1R-51


title: JK1R-44


title: JK1R-47


title: 18753_DNMT3L_HepG2


title: 18751_ARID3A_HepG2


title: JK1R-42


title: JK1R-41


title: 18750_ING1_HepG2


title: JK1R-49


title: 18752_RFX3_HepG2


title: JK1R-4


title: 24038_ZC3H7A-_K562


title: JK1R-39


title: 24030_ZMAT4-_K562


title: 24031_KLF17-_K562


title: 24033_ZNF7-_K562


title: 24032_ZNF385B-_K562


title: JK1R-37


title: 24035_ZNF574-_K562


title: JK1R-36


title: JK1R-38


title: JK1R-35


title: 24036_BHLHA9-_K562


title: JK1R-33


title: JK1R-32


title: 18999_HSF5_K562


title: JK1R-30


title: 24039_ZNF324-_K562


title: JK1R-31


title: 18990_RNF113B_K562


title: 18998_TEAD3_K562


title: JK1R-40


title: JK1R-29


title: JK1R-3


title: JK1R-28


title: 18995_YBX3_K562


title: 18993_NR1H3_K562


title: JK1R-27


title: 18992_FEZF2_K562


title: 18994_TSC22D4_K562


title: 18997_ZNF496_K562


title: 18996_ZSCAN21_K562


title: 24034_KIAA1967-_K562


title: JK1R-34


title: JK1R-25


title: JK1R-26


title: 24037_CEBPZ-_K562


title: JK1R-24


title: JK1R-23


title: 18404_ESRRB_K562


title: 18406_ZSCAN25_K562


title: JK1R-21


title: 18405_ZNF197_K562


title: JK1R-20


title: JK1R-22


title: 18403_KDM8_K562


title: JK1R-2


title: 18401_NPM3_K562


title: 18402_ZNF696_K562


title: JK1R-19


title: 18400_EHMT2_K562


title: 18409_USF1_K562


title: JK1R-18


title: 24105_SNW1-_K562


title: 24104_ZNF134-_K562


title: 18407_ZNF584_K562


title: JK1R-15


title: JK1R-13


title: JK1R-16


title: 18975_CTBP2_K562


title: JK1R-12


title: 24100_ZNF550-_K562


title: 24101_PHF17-_K562


title: JK1R-17


title: JK1R-11


title: 24106_ZNF280A-_K562


title: 18971_Smad4_K562


title: JK1R-10


title: JK1_STAR-RNA


title: 24109_ZNF597-_K562


title: JurkatA-96

description: Jurkat.ucsc.bedGraph.gz

extract_protocol:
Cells were trypsinized and single cell suspensions were harvested for STAR Scripts run using C1 Fluidigm Open App chips (10-17um).
The open chromatin was transposed by Tn5 transposase. Cell specific barcode was integrated to tagmented DNA of each cell by PCR amplification with indexed primer. The amplified PCR produced was purified by Ampure XP beads and the purified ATACseq library was sent for sequencing.


title: 24108_IRF4-_K562


title: 18979_STAT6_K562


title: 18970_HMGA1_K562


title: JurkatA-94

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-95

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-93

description: Jurkat.ucsc.bedGraph.gz


title: 18978_LRRFIP1_K562


title: JK1R-14


title: 17403_TP53-_MCF7


title: JurkatA-92

description: Jurkat.ucsc.bedGraph.gz


title: 17402_HMGB1-_MCF7


title: JurkatA-90

description: Jurkat.ucsc.bedGraph.gz


title: 17401_ZIC1-_MCF7


title: 17406_FOXJ2-_MCF7


title: 17407_SOX13-_MCF7


title: JurkatA-86

description: Jurkat.ucsc.bedGraph.gz


title: 16630_FOXM1_MCF7


title: 17404_EIF2S1-_MCF7


title: JurkatA-87

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-88

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-84

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-9

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-85

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-89

description: Jurkat.ucsc.bedGraph.gz


title: 18977_MED7_K562


title: 18976_ZNF384_K562


title: 17409_TFAP2C-_MCF7


title: JurkatA-82

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-81

description: Jurkat.ucsc.bedGraph.gz


title: 17405_SMAD1-_MCF7


title: 18972_PBX1_K562


title: 24102_ZC3H15-_K562


title: 18974_USF1_K562


title: JurkatA-80

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-83

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-91

description: Jurkat.ucsc.bedGraph.gz


title: 23908_KDM1A-_K562


title: JurkatA-79

description: Jurkat.ucsc.bedGraph.gz


title: 23909_ZNF335-_K562


title: 23904_TFAP2A-_K562


title: JurkatA-78

description: Jurkat.ucsc.bedGraph.gz


title: 23905_DIS3-_K562


title: JurkatA-77

description: Jurkat.ucsc.bedGraph.gz


title: 23906_RCOR3-_K562


title: JurkatA-76

description: Jurkat.ucsc.bedGraph.gz


title: 23900_ZNF239-_K562


title: JurkatA-74

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-75

description: Jurkat.ucsc.bedGraph.gz


title: 23901_PRDM13-_K562


title: 23902_T-_K562


title: 23907_PRDM2-_K562


title: JurkatA-73

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-72

description: Jurkat.ucsc.bedGraph.gz


title: 23903_NACC1-_K562


title: JurkatA-71

description: Jurkat.ucsc.bedGraph.gz


title: 17377_NRF1_MCF7


title: 17372_YY1_HepG2


title: 17373_GRHL2_HepG2


title: JurkatA-68

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-66

description: Jurkat.ucsc.bedGraph.gz


title: 17378_USF1_MCF7


title: JurkatA-7

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-67

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-65

description: Jurkat.ucsc.bedGraph.gz


title: 17379_YY1_MCF7


title: JurkatA-8

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-64

description: Jurkat.ucsc.bedGraph.gz


title: 19031_KLF16_K562


title: 19030_FOSB_K562


title: JurkatA-63

description: Jurkat.ucsc.bedGraph.gz


title: 19033_TAX1BP1_K562


title: JurkatA-62

description: Jurkat.ucsc.bedGraph.gz


title: 19032_PRDM1_K562


title: JurkatA-70

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-61

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-60

description: Jurkat.ucsc.bedGraph.gz


title: 19035_CTBP1_K562


title: 19034_HMG20B_K562


title: JurkatA-69

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-59

description: Jurkat.ucsc.bedGraph.gz


title: 19037_PRRX2_K562


title: JurkatA-6

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-58

description: Jurkat.ucsc.bedGraph.gz


title: 17371_USF1_HepG2


title: 26451_NACC1_K562


title: JurkatA-56

description: Jurkat.ucsc.bedGraph.gz


title: 26450_ZNF581_K562


title: 26453_THAP4_K562


title: JurkatA-55

description: Jurkat.ucsc.bedGraph.gz


title: 26452_ZNF189_K562


title: 26455_MYCL1_K562


title: JurkatA-53

description: Jurkat.ucsc.bedGraph.gz


title: 26454_T_K562


title: JurkatA-52

description: Jurkat.ucsc.bedGraph.gz


title: 26457_ZXDC_K562


title: JurkatA-51

description: Jurkat.ucsc.bedGraph.gz


title: 26456_ZNFX1_K562


title: JurkatA-50

description: Jurkat.ucsc.bedGraph.gz


title: 19036_NR5A2_K562


title: 23838_ZNF654_K562


title: JurkatA-49

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-47

description: Jurkat.ucsc.bedGraph.gz


title: 26458_MXD4_K562


title: 23839_USF1_K562


title: JurkatA-5

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-57

description: Jurkat.ucsc.bedGraph.gz


title: 26295_DDX43_K562


title: 26294_PRRX2_K562


title: JurkatA-46

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-45

description: Jurkat.ucsc.bedGraph.gz


title: 26293_MEIS2_K562


title: JurkatA-54

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-44

description: Jurkat.ucsc.bedGraph.gz


title: 26292_PRDM1_K562


title: JurkatA-43

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-42

description: Jurkat.ucsc.bedGraph.gz


title: 26291_ZNF574_K562


title: JurkatA-40

description: Jurkat.ucsc.bedGraph.gz


title: 23830_ZNF543_K562


title: JurkatA-4

description: Jurkat.ucsc.bedGraph.gz


title: 26459_THAP5_K562


title: JurkatA-48

description: Jurkat.ucsc.bedGraph.gz


title: 23835_DDX41_K562


title: JurkatA-38

description: Jurkat.ucsc.bedGraph.gz


title: 26290_ZEB2_K562


title: 28672_GABPA-_liver

source_name: liver

value: liver


title: 23837_ZFAT_K562


title: JurkatA-39

description: Jurkat.ucsc.bedGraph.gz


title: 23831_L3MBTL4_K562


title: 23836_KHDRBS3_K562


title: 28676_NRF1-_kidney

source_name: kidney


title: JurkatA-37

description: Jurkat.ucsc.bedGraph.gz


title: 23833_PHF19_K562


title: JurkatA-36

description: Jurkat.ucsc.bedGraph.gz


title: 28670_NRF1-_liver


title: JurkatA-41

description: Jurkat.ucsc.bedGraph.gz


title: 28675_USF1-_kidney


title: JurkatA-35

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-34

description: Jurkat.ucsc.bedGraph.gz


title: 28679_USF1-_placenta

source_name: placenta

value: placenta


title: JurkatA-32

description: Jurkat.ucsc.bedGraph.gz


title: 28678_GABPA-_kidney


title: JurkatA-3

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-31

description: Jurkat.ucsc.bedGraph.gz


title: 19105_Med8_K562


title: JurkatA-30

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-28

description: Jurkat.ucsc.bedGraph.gz


title: 19108_BRPF1_K562


title: JurkatA-29

description: Jurkat.ucsc.bedGraph.gz


title: 19104_TDRKH_K562


title: 19107_PRDM13_K562


title: JurkatA-27

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-33

description: Jurkat.ucsc.bedGraph.gz


title: 19103_UBR2_K562


title: JurkatA-25

description: Jurkat.ucsc.bedGraph.gz


title: 19106_PRDM5_K562


title: JurkatA-24

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-23

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-22

description: Jurkat.ucsc.bedGraph.gz


title: 19100_ZNF169_K562


title: JurkatA-26

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-21

description: Jurkat.ucsc.bedGraph.gz


title: 19102_OLIG2_K562


title: JurkatA-20

description: Jurkat.ucsc.bedGraph.gz


title: 22634_FOXN1_K562


title: 22635_USF1_K562


title: JurkatA-19

description: Jurkat.ucsc.bedGraph.gz


title: 22633_TOX3_K562


title: 22630_PPP1R10_K562


title: JurkatA-2

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-18

description: Jurkat.ucsc.bedGraph.gz


title: 28259_USF2_K562


title: 22632_STAT2_K562


title: JurkatA-16

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-15

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-17

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-14

description: Jurkat.ucsc.bedGraph.gz


title: 19101_GTF2B_K562


title: 28258_KLF16_K562


title: 22631_SMARCE1_K562


title: JurkatA-12

description: Jurkat.ucsc.bedGraph.gz


title: 28257_ZZZ3_K562


title: 28250_ZNF574_K562


title: 28251_PRRX2_K562


title: JurkatA-13

description: Jurkat.ucsc.bedGraph.gz


title: 28256_ZNF239_K562


title: 28253_BOLA3_K562


title: Jurkat_STAR-ATAC

description: Jurkat.ucsc.bedGraph.gz


title: 28252_DDX43_K562


title: JK1A-95


title: JK1A-94


title: JK1A-93


title: JK1A-96


title: 18740_BCL6_HepG2


title: 18749_PLAG1_HepG2


title: 18748_HLF_HepG2


title: JK1A-92


title: 28255_NPM3_K562


title: 18741_NR2C1_HepG2


title: 18743_PUM1_HepG2


title: 18742_PPARA_HepG2


title: JK1A-90


title: JK1A-9


title: 18744_ID2_HepG2


title: JK1A-89


title: 28254_LHX2_K562


title: JurkatA-11

description: Jurkat.ucsc.bedGraph.gz


title: JurkatA-10

description: Jurkat.ucsc.bedGraph.gz


title: 18745_GATA4_HepG2


title: JK1A-88


title: 18746_PROX1_HepG2


title: JK1A-86


title: 28419_NRF1-_liver


title: JK1A-87


title: 18747_ZNF444_HepG2


title: JK1A-85


title: 28418_YY1-_liver


title: JK1A-83


title: 23052_BOLA3_K562


title: JK1A-91


title: 28413_NRF1-_liver


title: JK1A-82


title: 28412_YY1-_liver


title: 23501_TADA2A-_K562


title: JK1A-80


title: JK1A-81


title: 28417_USF1-_liver


title: 23051_E2F6_K562


title: JK1A-79


title: 23506_PKNOX2-_K562


title: JK1A-78


title: JK1A-77


title: 23505_SRY-_K562


title: JK1A-76


title: 23507_SMARCD1-_K562


title: JK1A-84


title: JK1A-75


title: JK1A-74


title: JK1A-73


title: 24023_KLF12-_K562


title: 28415_GABPA-_liver


title: JK1A-7


title: 24021_ZNF155-_K562


title: 24020_SHARPIN-_K562


title: JK1A-72


title: 24027_NFYC-_K562


title: JK1A-8


title: JK1A-69


title: JK1A-68


title: JK1A-67


title: 24026_NACC2-_K562


title: 18988_METTL21A_K562


title: 18989_PLXNB1_K562


title: JK1A-66


title: JK1A-64


title: JK1A-70


title: JK1A-65


title: 18982_SIRT3_K562


title: 24022_HMX3-_K562


title: JK1A-71


title: JK1A-63


title: JK1A-62


title: 18983_OBFC1_K562


title: 18980_ARID2_K562


title: JK1A-61


title: 18981_MYO1B_K562


title: 24024_THAP10-_K562


title: JK1A-60


title: 18986_ZSCAN23_K562


title: 18984_NEUROD2_K562


title: 18987_FLI1_K562


title: JK1A-6


title: 24025_HOMEZ-_K562


title: JK1A-58


title: JK1A-57


title: 18410_Elf1_MCF7


title: 18411_BRWD1_MCF7


title: JK1A-55


title: 18414_NCOA3_MCF7


title: 18413_ZNF134_MCF7


title: 18412_MORF4L1_MCF7


title: JK1A-53


title: JK1A-54


title: JK1A-52


title: JK1A-51


title: 18415_ANAPC2_MCF7


title: JK1A-50


title: 18416_BRD1_MCF7


title: JK1A-5


title: 18418_PIKFYVE_MCF7


title: JK1A-59


title: JK1A-49


title: 18419_ZBTB24_MCF7


title: JK1A-48


title: 18985_SRF_K562


title: 18960_CARM1_K562


title: JK1A-47


title: JK1A-46


title: 18961_NACC1_K562


title: JK1A-56


title: 18962_ZSCAN2_K562


title: 18963_ELF3_K562


title: JK1A-43


title: JK1A-44


title: 18966_FOS_K562


title: 18965_NFIX_K562


title: 24112_ZNF354B-_K562


title: 24111_SP110-_K562


title: JK1A-42


title: JK1A-40


title: 18417_SRRT_MCF7


title: 18968_RARB_K562


title: JK1A-41


title: JK1A-39


title: 18969_HOXC8_K562


title: JK1A-4


title: JK1A-38


title: 24119_LCOR-_K562


title: 24118_ZNF526-_K562


title: 22037_PRDM4-_MCF7


title: JK1A-37


title: JK1A-36


title: 23939_USF1_K562


title: JK1A-34


title: 23938_TCF25_K562


title: JK1A-45


title: JK1A-35


title: JK1A-33


title: 23931_POLE3_K562


title: 19618_IKZF1_K562


title: 23933_BCL6_K562


title: 23932_LEUTX_K562


title: JK1A-31


title: JK1A-32


title: 23937_USP16_K562


title: 23935_FoxC2_K562


title: 23934_CASP8AP2_K562


title: JK1A-28


title: JK1A-3


title: JK1A-29


title: JK1A-27


title: JK1A-24


title: JK1A-26


title: 19020_DLX3_K562


title: 23805_ZHX2-_K562


title: JK1A-25


title: 19022_USF1_K562


title: JK1A-23


title: 23804_RPS6KA5-_K562


title: 23936_CBX5_K562


title: 26441_ZFYVE20_K562


title: JK1A-22


title: 26440_CEBPZ_K562


title: JK1A-21


title: JK1A-30


title: JK1A-20


title: 23801_ANKZF1-_K562


title: 23800_ZBTB7B-_K562


title: JK1A-2


title: 23803_SHOX-_K562


title: JK1A-19


title: 26448_GTF2F2_K562


title: 23802_PRMT6-_K562


title: JK1A-17


title: JK1A-18


title: 28686_NRF1-_Breast

source_name: Breast

value: Breast


title: JK1A-16


title: 22866_CTBP1_K562


title: JK1A-15


title: JK1A-14


title: JK1A-13


title: JK1A-12


title: 17399_PRDM7-_MCF7


title: 23854_ZNF207_K562


title: 23859_ZNF800_K562


title: JK1A-11


title: 22211_ZFYVE20_K562


title: JK1_STAR-ATAC


title: 22210_SP140_K562


title: JK1A-10


title: 19098_SAMD4B_K562


title: 23523_NPM1-_K562


title: 18292_SMARCB1_HepG2


title: 18290_NFIL3_HepG2


title: 18291_PAX3_HepG2


title: K562_STAR_RNA-seq_95

data_processing:
Libraries were mapped to hg19 genome using STAR aligner. We allowed up to 2 mismatches and removed reads mapping to more than one region in the genome.
Cuffquant was used to quantify reads mapping to each gene in every single-cell library
Cuffnorm was used to normalize the values.
Genome_build: hg19
Supplementary_files_format_and_content: Tab-delimited tables containing the FPKM values of the genes in each single-cell library.

source_name: K562 cells

growth_protocol: Human neonatal fibroblast cell line, BJ (Stemgent, Cambridge, MA), were maintained in BJ medium, which is composed of DME+4500 mg/l medium (HyClone) supplemented with 10% Fetal Bovine Serum (Gibco), MEM Non-Essential Amino Acids Solution (100X, Gibco), 200mM L-Glutamine (100X, Gibco), 10000 U/ml Penicillin-Streptomycin (100X, Gibco). K562 (ATCC® CCL-243™) were maintained in K562 medium, which is composed of RPMI1640 medium with L- Glutamine (HyClone) supplemented with 10% Fetal Bovine Serum (Gibco), 200mM L-Glutamine (100X, Gibco), 10000 U/ml Penicillin-Streptomycin (100X, Gibco).

extract_protocol:
Cells were trypsinized and single cell suspensions were harvested for STAR Scripts run using C1 Fluidigm mRNA-seq chips (10-17um).
The concentration of amplified cDNA was measured by high sensitivity bioanalyzer chips and diluted to required range of cDNA for following library preparation steps. STAR mRNAseq libraries were prepared using Nextera XT DNA Library Preparation Kit (FC-131-1096) following “Using C1 to Generate Single-Cell cDNA Libraries for mRNA Sequencing” manual.

value: K562 cells


title: K562_STAR_RNA-seq_92


title: K562_STAR_RNA-seq_91


title: K562_STAR_RNA-seq_96


title: K562_STAR_RNA-seq_93


title: K562_STAR_RNA-seq_94


title: 24113_ZBED1-_K562


title: K562_STAR_RNA-seq_90


title: 18294_TOX3_HepG2


title: K562_STAR_RNA-seq_9


title: 18295_SOX9_HepG2


title: 22028_LHX4-_MCF7


title: K562_STAR_RNA-seq_88


title: 19095_SLC25A24_K562


title: 17494_ZNF701_K562


title: 23782_CHEK2-_K562


title: K562_STAR_RNA-seq_85


title: 17490_ELK1_K562


title: 22206_HMGB1_K562


title: 22590_ZNF503_K562


title: 23081_KLF14_K562


title: 22209_Pou5F1_K562


title: K562_STAR_RNA-seq_83


title: 23558_IRF2_K562


title: 23559_RFX6_K562


title: K562_STAR_RNA-seq_81


title: K562_STAR_RNA-seq_82


title: K562_STAR_RNA-seq_80


title: 24029_GMEB2-_K562


title: K562_STAR_RNA-seq_89


title: K562_STAR_RNA-seq_8


title: 17486_NCOA1_K562


title: K562_STAR_RNA-seq_86


title: K562_STAR_RNA-seq_87


title: 22938_MLLT10_K562


title: 17484_SOHLH1_K562


title: K562_STAR_RNA-seq_78


title: K562_STAR_RNA-seq_84


title: K562_STAR_RNA-seq_77


title: K562_STAR_RNA-seq_76


title: 24028_HDGF-_K562


title: 17461_ZUFSP_K562


title: 17463_SOX5_K562


title: 17462_CDC5L_K562


title: K562_STAR_RNA-seq_75


title: 22052_FOXP3-_MCF7


title: 23557_VENTX_K562


title: K562_STAR_RNA-seq_79


title: 22051_DRGX-_MCF7


title: K562_STAR_RNA-seq_71


title: K562_STAR_RNA-seq_7


title: K562_STAR_RNA-seq_74


title: K562_STAR_RNA-seq_70


title: 18108_FOXM1_MCF7


title: 18673_ZNF277_K562


title: K562_STAR_RNA-seq_69


title: 23512_GTF2H2-_K562


title: K562_STAR_RNA-seq_73


title: 15404_HSF2_K562-8M


title: 18106_YY1_K562


title: 22050_HMGN1-_MCF7


title: K562_STAR_RNA-seq_68


title: K562_STAR_RNA-seq_67


title: 22949_CBFB_K562


title: 22943_DPRX_K562


title: K562_STAR_RNA-seq_66


title: K562_STAR_RNA-seq_64


title: 17459_VENTX_K562


title: K562_STAR_RNA-seq_63


title: 17457_EZH2_K562


title: K562_STAR_RNA-seq_65


title: 22041_SOX2-_MCF7


title: 22941_HES1_K562


title: K562_STAR_RNA-seq_62


title: K562_STAR_RNA-seq_61


title: K562_STAR_RNA-seq_72


title: 23790_CTBP2-_K562


title: 19040_FOSL1_K562


title: K562_STAR_RNA-seq_6


title: K562_STAR_RNA-seq_60


title: K562_STAR_RNA-seq_59


title: 19042_ZNF438_K562


title: 19041_Med1_K562


title: K562_STAR_RNA-seq_58


title: 22224_NR5A2_K562


title: 19043_ZNF446_K562


title: K562_STAR_RNA-seq_54


title: K562_STAR_RNA-seq_56


title: K562_STAR_RNA-seq_57


title: 23576_TSC22D4_K562


title: K562_STAR_RNA-seq_55


title: 23770_SCAND3-_K562


title: 18654_NR2E3_K562


title: K562_STAR_RNA-seq_51


title: 18655_MITF_K562


title: 18656_HOXB5_K562


title: K562_STAR_RNA-seq_53


title: 23778_GRHL1-_K562


title: K562_STAR_RNA-seq_52


title: K562_STAR_RNA-seq_49


title: K562_STAR_RNA-seq_50


title: K562_STAR_RNA-seq_48


title: 23894_NPM1-_K562


title: 18641_BCL11A_K562


title: K562_STAR_RNA-seq_5


title: K562_STAR_RNA-seq_46


title: 18653_TGIF2LX_K562


title: 18642_KLF15_K562


title: 18640_ZNF608_K562


title: 18643_BSX_K562


title: 22954_SP5_K562


title: 23774_ZNF157-_K562


title: K562_STAR_RNA-seq_44


title: 22956_ZNF277_K562


title: 22955_YEATS4_K562


title: 22951_CXXC1_K562


title: K562_STAR_RNA-seq_41


title: K562_STAR_RNA-seq_42


title: 22959_PCGF3_K562


title: K562_STAR_RNA-seq_40


title: K562_STAR_RNA-seq_4


title: 17442_HMGN1-_MCF7


title: K562_STAR_RNA-seq_39


title: 17443_DRGX-_MCF7


title: K562_STAR_RNA-seq_47


title: K562_STAR_RNA-seq_38


title: K562_STAR_RNA-seq_37


title: 15408_NFE2L2_K562-8M


title: K562_STAR_RNA-seq_36


title: K562_STAR_RNA-seq_35


title: 18100_FOXM1_K562


title: K562_STAR_RNA-seq_45


title: K562_STAR_RNA-seq_34


title: K562_STAR_RNA-seq_33


title: K562_STAR_RNA-seq_43


title: 23788_ZBED1-_K562


title: 18102_NRF1_K562


title: K562_STAR_RNA-seq_32


title: 19078_ZSCAN5A_K562


title: K562_STAR_RNA-seq_31


title: 23563_TADA2B_K562


title: 18101_GRHL2_K562


title: K562_STAR_RNA-seq_30


title: K562_STAR_RNA-seq_3


title: 17444_FOXP3-_MCF7


title: 24490_MINA_K562


title: 23789_PARP11-_K562


title: 17431_MYOG-_MCF7


title: K562_STAR_RNA-seq_28


title: 18659_USF1_K562


title: 17430_FOXI1-_MCF7


title: K562_STAR_RNA-seq_27


title: 22796_HMGB1_K562


title: 22797_SP140_K562


title: 17433_SOX2-_MCF7


title: K562_STAR_RNA-seq_24


title: K562_STAR_RNA-seq_23


title: K562_STAR_RNA-seq_22


title: 22798_ZFYVE20_K562


title: 24115_CTBP2-_K562


title: K562_STAR_RNA-seq_26


title: K562_STAR_RNA-seq_21


title: 19068_NFIX_K562


title: K562_STAR_RNA-seq_2


title: K562_STAR_RNA-seq_19


title: 19066_ELF3_K562


title: K562_STAR_RNA-seq_17


title: 19063_CARM1_K562


title: 19062_ID3_K562


title: 19065_ZSCAN2_K562


title: K562_STAR_RNA-seq_29


title: K562_STAR_RNA-seq_18


title: K562_STAR_RNA-seq_25


title: 24485_DVL3_K562


title: 24486_TRDMT1_K562


title: K562_STAR_RNA-seq_13


title: 24487_ZNF488_K562


title: 24489_ZNF570_K562


title: K562_STAR_RNA-seq_15


title: K562_STAR_RNA-seq_12


title: 22978_OTX2_K562


title: K562_STAR_RNA-seq_10


title: K562_STAR_RNA-seq_20


title: 17424_OVOL2-_MCF7


title: K562_STAR_RNA-seq_1


title: K562_STAR_RNA-seq_11


title: 17429_MYCN-_MCF7


title: BJ_STAR_RNA-seq_96

source_name: BJ Fibroblasts

value: BJ Fibroblasts


title: 19017_ZSCAN12_K562


title: 19064_NACC1_K562


title: K562_STAR_RNA-seq_16


title: 19121_SRY_K562


title: BJ_STAR_RNA-seq_94


title: 18657_THRA_K562


title: BJ_STAR_RNA-seq_93


title: 24133_ZNF217-_K562


title: 22983_CDX2_K562


title: K562_STAR_RNA-seq_14


title: 24136_RFX5-_K562


title: BJ_STAR_RNA-seq_91


title: BJ_STAR_RNA-seq_92


title: BJ_STAR_RNA-seq_90


title: 22973_KLF14_K562


title: 23825_MINA_K562


title: 24137_HMGN1-_K562


title: 17417_LHX4-_MCF7


title: BJ_STAR_RNA-seq_88


title: 23823_ZNF570_K562


title: BJ_STAR_RNA-seq_87


title: 23820_ZNF488_K562


title: 18991_Bmi1_K562


title: BJ_STAR_RNA-seq_95


title: 17400_BRD3-_MCF7


title: BJ_STAR_RNA-seq_84


title: 17408_ZNF263-_MCF7


title: BJ_STAR_RNA-seq_86


title: BJ_STAR_RNA-seq_83


title: 24107_CHEK2-_K562


title: 24103_GRHL1-_K562


title: 17370_NRF1_HepG2


title: BJ_STAR_RNA-seq_9


title: BJ_STAR_RNA-seq_89


title: BJ_STAR_RNA-seq_8


title: 23832_NR1D1_K562


title: BJ_STAR_RNA-seq_81


title: BJ_STAR_RNA-seq_80


title: 19039_MEF2A_K562


title: BJ_STAR_RNA-seq_79


title: 19038_ETS1_K562


title: BJ_STAR_RNA-seq_78


title: 23834_ZNF333_K562


title: BJ_STAR_RNA-seq_77


title: 19109_CELF6_K562


title: BJ_STAR_RNA-seq_76


title: 15400_FOXM1_MCF7-8M


title: BJ_STAR_RNA-seq_85


title: 23502_BACH2-_K562


title: 22039_MYOG-_MCF7


title: 23930_TSC22D4_K562


title: BJ_STAR_RNA-seq_74


title: BJ_STAR_RNA-seq_75


title: BJ_STAR_RNA-seq_73


title: BJ_STAR_RNA-seq_72


title: 23808_ZNF217-_K562


title: BJ_STAR_RNA-seq_71


title: BJ_STAR_RNA-seq_82


title: BJ_STAR_RNA-seq_70


title: BJ_STAR_RNA-seq_7


title: 19111_PPP5C_K562


title: BJ_STAR_RNA-seq_68


title: BJ_STAR_RNA-seq_69


title: 18105_USF1_K562


title: BJ_STAR_RNA-seq_65


title: 23068_CBFB_K562


title: 23064_MLLT10_K562


title: BJ_STAR_RNA-seq_66


title: 22839_ZSCAN5A_K562


title: BJ_STAR_RNA-seq_64


title: 23066_HES1_K562


title: BJ_STAR_RNA-seq_67


title: 18371_ASF1A_K562


title: 23922_TADA2B_K562


title: 17356_NRF1_K562


title: BJ_STAR_RNA-seq_63


title: 17359_GRHL2_K562


title: BJ_STAR_RNA-seq_62


title: 23811_RFX5-_K562


title: BJ_STAR_RNA-seq_6


title: BJ_STAR_RNA-seq_61


title: BJ_STAR_RNA-seq_60


title: 23817_DVL3_K562


title: 23819_TRDMT1_K562


title: BJ_STAR_RNA-seq_58


title: 19621_SRY_K562


title: BJ_STAR_RNA-seq_59


title: 22620_EIF2S1_K562


title: BJ_STAR_RNA-seq_57


title: 24114_PARP11-_K562


title: BJ_STAR_RNA-seq_55


title: BJ_STAR_RNA-seq_56


title: 19617_CELF6_K562


title: 22038_FOXI1-_MCF7


title: BJ_STAR_RNA-seq_53


title: BJ_STAR_RNA-seq_54


title: 28437_NRF1-_Breast


title: 22034_OVOL2-_MCF7


title: BJ_STAR_RNA-seq_52


title: BJ_STAR_RNA-seq_51


title: BJ_STAR_RNA-seq_50


title: 23070_CXXC1_K562


title: BJ_STAR_RNA-seq_5


title: 23071_SP5_K562


title: 23072_YEATS4_K562


title: 23812_HMGN1-_K562


title: BJ_STAR_RNA-seq_49


title: 23073_ZNF277_K562


title: 18940_ZNF446_K562


title: BJ_STAR_RNA-seq_47


title: 26297_DBX2_K562


title: 19593_ZSCAN5A_K562


title: BJ_STAR_RNA-seq_46


title: 19604_SLC25A24_K562


title: 19607_SAMD4B_K562


title: BJ_STAR_RNA-seq_48


title: 16659_ATF2_MCF7


title: BJ_STAR_RNA-seq_45


title: BJ_STAR_RNA-seq_44


title: BJ_STAR_RNA-seq_43


title: 18314_DNMT3L_HepG2


title: 18712_ELK1_K562


title: BJ_STAR_RNA-seq_41


title: BJ_STAR_RNA-seq_4


title: BJ_STAR_RNA-seq_39


title: BJ_STAR_RNA-seq_40


title: 18449_ZNF222_MCF7


title: BJ_STAR_RNA-seq_38


title: 18937_FOSL1_K562


title: 18442_EIF4A3_MCF7


title: 23883_GTF2H2-_K562


title: BJ_STAR_RNA-seq_35


title: BJ_STAR_RNA-seq_36


title: 18448_PAX9_MCF7


title: 24099_ZNF157-_K562


title: BJ_STAR_RNA-seq_34


title: 24095_SCAND3-_K562


title: BJ_STAR_RNA-seq_37


title: 18935_ETS1_K562


title: BJ_STAR_RNA-seq_32


title: 23873_BACH2-_K562


title: BJ_STAR_RNA-seq_30


title: 15410_SMARCC1_K562-8M


title: BJ_STAR_RNA-seq_31


title: 16660_ELK1_MCF7


title: BJ_STAR_RNA-seq_33


title: BJ_STAR_RNA-seq_42


title: BJ_STAR_RNA-seq_29


title: 16661_HMGB1_MCF7


title: BJ_STAR_RNA-seq_28


title: 18444_NR1D2_MCF7


title: 18630_SATB1_K562


title: BJ_STAR_RNA-seq_26


title: BJ_STAR_RNA-seq_3


title: 18636_MESP1_K562


title: 18639_ZFPM2_K562


title: 23084_OTX2_K562


title: BJ_STAR_RNA-seq_24


title: BJ_STAR_RNA-seq_23


title: 18704_ZEB2_K562


title: 18637_TFAP2D_K562


title: BJ_STAR_RNA-seq_22


title: 18706_SOHLH1_K562


title: BJ_STAR_RNA-seq_20


title: BJ_STAR_RNA-seq_21


title: 18703_ZNF174_K562


title: BJ_STAR_RNA-seq_2


title: BJ_STAR_RNA-seq_19


title: 24400_ZNF280D-_K562


title: 24401_CREB3L4-_K562


title: 24402_SCRT1-_K562


title: 18638_MEF2B_K562


title: 24403_DDX43-_K562


title: BJ_STAR_RNA-seq_27


title: BJ_STAR_RNA-seq_25


title: 28688_GABPA-_Breast


title: 28684_USF1-_Breast


title: BJ_STAR_RNA-seq_15


title: BJ_STAR_RNA-seq_16


title: BJ_STAR_RNA-seq_17


title: BJ_STAR_RNA-seq_13


title: 24404_USF1_K562


title: BJ_STAR_RNA-seq_14


title: 18705_THRB_K562


title: 28685_YY1-_Breast


title: BJ_STAR_RNA-seq_12


title: 28682_GABPA-_placenta


title: 28680_NRF1-_placenta


title: BJ_STAR_RNA-seq_10


title: 23539_DVL2-_K562


title: 23538_ZNF335-_K562


title: BJ_STAR_RNA-seq_18


title: BJ_STAR_RNA-seq_11


title: 23537_KDM1A-_K562


title: K562_STAR_ATAC-seq_94

data_processing:
Libraries were mapped to hg19 genome using STAR aligner. We allowed up to 2 mismatches and removed reads mapping to more than one region in the genome. The “–alignIntronMax” was set to 1 and the option “--  alignEndsType EndToEnd” was used.
Duplicates were removed using MarkDuplicates module of PICARD.
To determine the highly accessible regions, the de-duplicated mouse ATAC-Seq libraries were merged and peaks were called using MACS2. The following MACS2 options were used: -- nomodel -- nolambda -- keep-dup all – call-summits.
The de-duplicated single cell bam files were uploaded to chromVAR.
Genome_build: hg19
Supplementary_files_format_and_content: bedGraphs which can be used for visualization in the UCSC genome browser.

growth_protocol: Human neonatal fibroblast cell line, BJ (Stemgent, Cambridge, MA), were maintained in BJ medium, which is composed of DME+4500 mg/l medium (HyClone) supplemented with 10% Fetal Bovine Serum (Gibco), MEM Non-Essential Amino Acids Solution (100X, Gibco), 200mM L-Glutamine (100X, Gibco), 10000 U/ml Penicillin-Streptomycin (100X, Gibco). K562 (ATCC® CCL-243™) were maintained in K562 medium, which is composed of RPMI1640 medium with L- Glutamine (HyClone) supplemented with 10% Fetal Bovine Serum (Gibco), 200mM L-Glutamine (100X, Gibco), 10000 U/ml Penicillin-Streptomycin (100X, Gibco).

extract_protocol:
Cells were trypsinized and single cell suspensions were harvested for STAR Scripts run using C1 Fluidigm mRNA-seq chips (10-17um).
The open chromatin was transposed by Tn5 transposase. Cell specific barcode was integrated to tagmented DNA of each cell by PCR amplification with indexed primer. The amplified PCR produced was purified by Ampure XP beads and the purified ATACseq library was sent for sequencing.


title: 23534_DIS3-_K562


title: K562_STAR_ATAC-seq_95


title: 23536_PRDM2-_K562


title: K562_STAR_ATAC-seq_96


title: BJ_STAR_RNA-seq_1


title: 23531_T-_K562


title: K562_STAR_ATAC-seq_93


title: K562_STAR_ATAC-seq_92


title: 23530_PRDM13-_K562


title: 23533_TFAP2A-_K562


title: K562_STAR_ATAC-seq_91


title: 23532_NACC1-_K562


title: K562_STAR_ATAC-seq_90


title: 18289_PAX5_HepG2


title: 18288_ZBED3_HepG2


title: K562_STAR_ATAC-seq_9


title: 18280_ID1_HepG2


title: 18281_Pou5F1_HepG2


title: K562_STAR_ATAC-seq_87


title: 23535_RCOR3-_K562


title: K562_STAR_ATAC-seq_88


title: K562_STAR_ATAC-seq_85


title: K562_STAR_ATAC-seq_86


title: K562_STAR_ATAC-seq_84


title: 18283_SOX12_HepG2


title: 18282_TEAD4_HepG2


title: K562_STAR_ATAC-seq_89


title: 18285_CEBPE_HepG2


title: 18287_FOXP4_HepG2


title: 18286_NFE2L2_HepG2


title: 18739_DNMT3A_HepG2


title: 18738_ZNF784_HepG2


title: 18284_CEBPB_HepG2


title: 18731_SMARCB1_HepG2


title: 18730_PAX3_HepG2


title: K562_STAR_ATAC-seq_8


title: K562_STAR_ATAC-seq_80


title: K562_STAR_ATAC-seq_79


title: K562_STAR_ATAC-seq_81


title: K562_STAR_ATAC-seq_78


title: K562_STAR_ATAC-seq_82


title: 18732_ZCCHC7_HepG2


title: K562_STAR_ATAC-seq_83


title: K562_STAR_ATAC-seq_76


title: K562_STAR_ATAC-seq_75


title: 18733_TOX3_HepG2


title: 18734_SOX9_HepG2


title: K562_STAR_ATAC-seq_73


title: 18737_ZBTB22_HepG2


title: K562_STAR_ATAC-seq_72


title: 18736_CPEB3_HepG2


title: K562_STAR_ATAC-seq_71


title: 22864_DPF1_K562


title: K562_STAR_ATAC-seq_70


title: 22865_ZNF200_K562


title: K562_STAR_ATAC-seq_7


title: K562_STAR_ATAC-seq_69


title: K562_STAR_ATAC-seq_77


title: 22860_FOXM1_K562


title: 22861_BRD1_K562


title: K562_STAR_ATAC-seq_67


title: 18735_ZXDC_HepG2


title: 22862_PLXNB1_K562


title: K562_STAR_ATAC-seq_66


title: K562_STAR_ATAC-seq_64


title: 22863_CREBL2_K562


title: K562_STAR_ATAC-seq_74


title: 22868_NR2C1_K562


title: 24117_ZHX3-_K562


title: 22869_ZBTB22_K562


title: K562_STAR_ATAC-seq_65


title: 22840_PRMT7_K562


title: 24116_THAP9-_K562


title: 18964_NFIA_K562


title: K562_STAR_ATAC-seq_6


title: K562_STAR_ATAC-seq_60


title: 26160_STAT3-_K562


title: K562_STAR_ATAC-seq_61


title: K562_STAR_ATAC-seq_62


title: K562_STAR_ATAC-seq_59


title: 17489_CREB1_K562


title: 24110_ZNF428-_K562


title: K562_STAR_ATAC-seq_58


title: 22867_KCMF1_K562


title: K562_STAR_ATAC-seq_68


title: K562_STAR_ATAC-seq_57


title: K562_STAR_ATAC-seq_56


title: 18967_ZBTB18_K562


title: K562_STAR_ATAC-seq_63


title: K562_STAR_ATAC-seq_55


title: 23858_ZNF334_K562


title: K562_STAR_ATAC-seq_54


title: 22849_TBX19_K562


title: K562_STAR_ATAC-seq_53


title: K562_STAR_ATAC-seq_52


title: 23852_PHF21B_K562


title: 22587_USF1_K562


title: K562_STAR_ATAC-seq_50


title: K562_STAR_ATAC-seq_5


title: 23853_ZNF296_K562


title: 23850_USF2_K562


title: K562_STAR_ATAC-seq_48


title: K562_STAR_ATAC-seq_47


title: 23857_ZNF683_K562


title: 23856_THAP7_K562


title: K562_STAR_ATAC-seq_46


title: 19545_CBX2_K562


title: K562_STAR_ATAC-seq_45


title: K562_STAR_ATAC-seq_49


title: K562_STAR_ATAC-seq_44


title: 19544_HDAC1_K562


title: 19547_RGCC_K562


title: 22848_NAP1L5_K562


title: 19546_MESP2_K562


title: K562_STAR_ATAC-seq_43


title: K562_STAR_ATAC-seq_42


title: K562_STAR_ATAC-seq_51


title: 19540_FoxC2_K562


title: K562_STAR_ATAC-seq_40


title: 19543_RBBP5_K562


title: K562_STAR_ATAC-seq_4


title: 19549_ESRRG_K562


title: K562_STAR_ATAC-seq_39


title: 19542_FOXA2_K562


title: 23855_ZNF581_K562


title: 23851_HDGFL1_K562


title: K562_STAR_ATAC-seq_37


title: 19548_VDR_K562


title: 22219_NR3C2_K562


title: 22213_GABPA_K562


title: K562_STAR_ATAC-seq_35


title: 22212_Nab2_K562


title: 22218_ARNT_K562


title: 22217_STAT3_K562


title: K562_STAR_ATAC-seq_32


title: K562_STAR_ATAC-seq_33


title: K562_STAR_ATAC-seq_36


title: K562_STAR_ATAC-seq_31


title: 19541_SET_K562


title: 22216_Elf1_K562


title: 22215_ZNF639_K562


title: K562_STAR_ATAC-seq_41


title: K562_STAR_ATAC-seq_30


title: K562_STAR_ATAC-seq_38


title: K562_STAR_ATAC-seq_3


title: 22214_ETV6_K562


title: K562_STAR_ATAC-seq_29


title: 19093_POGZ_K562


title: 19090_BOLA3_K562


title: 19092_ZNFX1_K562


title: K562_STAR_ATAC-seq_28


title: K562_STAR_ATAC-seq_27


title: K562_STAR_ATAC-seq_25


title: K562_STAR_ATAC-seq_26


title: K562_STAR_ATAC-seq_34


title: K562_STAR_ATAC-seq_24


title: 19097_ZBTB3_K562


title: K562_STAR_ATAC-seq_22


title: 19099_PRDM16_K562


title: 26303_ZNF438_K562


title: 24501_ZNF581_K562


title: 19094_CELF4_K562


title: K562_STAR_ATAC-seq_21


title: 24500_ZNF296_K562


title: K562_STAR_ATAC-seq_20


title: K562_STAR_ATAC-seq_2


title: K562_STAR_ATAC-seq_19


title: 24503_USF1_K562


title: K562_STAR_ATAC-seq_17


title: K562_STAR_ATAC-seq_18


title: 19091_IRX2_K562


title: 26309_ZNF239_K562


title: 23783_IRF4-_K562


title: 28307_ZNF143-_K562


title: 24502_ZNF334_K562


title: K562_STAR_ATAC-seq_16


title: K562_STAR_ATAC-seq_15


title: 19096_POU3F2_K562


title: K562_STAR_ATAC-seq_23


title: 15396_GRHL2_MCF7-8M


title: K562_STAR_ATAC-seq_14


title: K562_STAR_ATAC-seq_13


title: 15398_YY1_K562-8M


title: 15399_NRF1_K562-8M


title: 15397_PAX2_K562-8M


title: K562_STAR_ATAC-seq_12


title: K562_STAR_ATAC-seq_11


title: K562_STAR_ATAC-seq_10


title: K562_STAR_ATAC-seq_1


title: 18122_YY1_MCF7


title: 23528_ZNF230-_K562


title: 23527_SIRT2-_K562


title: BJ_STAR_ATAC-seq_95


title: BJ_STAR_ATAC-seq_96


title: 23526_ID3-_K562


title: 23524_KLF1-_K562


title: BJ_STAR_ATAC-seq_94


title: 23522_MLXIP-_K562


title: BJ_STAR_ATAC-seq_91


title: BJ_STAR_ATAC-seq_93


title: 23525_TGIF1-_K562


title: BJ_STAR_ATAC-seq_92


title: 23520_IRX5-_K562


title: BJ_STAR_ATAC-seq_90


title: BJ_STAR_ATAC-seq_9


title: BJ_STAR_ATAC-seq_88


title: BJ_STAR_ATAC-seq_89


title: BJ_STAR_ATAC-seq_87


title: 23521_SIRT1-_K562


title: 18298_ZBTB22_HepG2


title: 18293_ZCCHC7_HepG2


title: BJ_STAR_ATAC-seq_85


title: 23529_ZNF239-_K562


title: BJ_STAR_ATAC-seq_86


title: 18297_CPEB3_HepG2


title: 18729_NFIL3_HepG2


title: 18722_SOX12_HepG2


title: BJ_STAR_ATAC-seq_83


title: BJ_STAR_ATAC-seq_81


title: 18720_Pou5F1_HepG2


title: BJ_STAR_ATAC-seq_80


title: BJ_STAR_ATAC-seq_84


title: 18726_FOXP4_HepG2


title: 18721_TEAD4_HepG2


title: 18723_CEBPB_HepG2


title: 18727_ZBED3_HepG2


title: BJ_STAR_ATAC-seq_82


title: BJ_STAR_ATAC-seq_78


title: BJ_STAR_ATAC-seq_79


title: 18299_ZNF784_HepG2


title: BJ_STAR_ATAC-seq_8


title: BJ_STAR_ATAC-seq_77


title: BJ_STAR_ATAC-seq_76


title: 18724_CEBPE_HepG2


title: 18725_NFE2L2_HepG2


title: BJ_STAR_ATAC-seq_75


title: 18296_ZXDC_HepG2


title: 18728_PAX5_HepG2


title: BJ_STAR_ATAC-seq_74


title: 18614_PPARD_K562


title: BJ_STAR_ATAC-seq_73


title: 22029_ZNF354A-_MCF7


title: BJ_STAR_ATAC-seq_72


title: 18615_STAT2_K562


title: 18616_TFAP2B_K562


title: 18617_POU6F1_K562


title: BJ_STAR_ATAC-seq_71


title: BJ_STAR_ATAC-seq_70


title: 18612_GBX1_K562


title: BJ_STAR_ATAC-seq_7


title: 18619_RELB_K562


title: BJ_STAR_ATAC-seq_68


title: BJ_STAR_ATAC-seq_69


title: 18618_CDX2_K562


title: BJ_STAR_ATAC-seq_67


title: 16657_NRF1_MCF7


title: 22851_NFE2L2_K562


title: BJ_STAR_ATAC-seq_66


title: BJ_STAR_ATAC-seq_64


title: BJ_STAR_ATAC-seq_65


title: 22850_HDAC8_K562


title: 22852_FEZF2_K562


title: BJ_STAR_ATAC-seq_63


title: BJ_STAR_ATAC-seq_62


title: BJ_STAR_ATAC-seq_61


title: 22855_MAP3K7_K562


title: 22854_ZNF704_K562


title: 22857_HOPX_K562


title: 22856_NRF1_K562


title: BJ_STAR_ATAC-seq_60


title: 22859_ZNFX1_K562


title: 18613_ZKSCAN3_K562


title: BJ_STAR_ATAC-seq_6


title: 22858_DDIT3_K562


title: BJ_STAR_ATAC-seq_59


title: 17493_Maz_K562


title: BJ_STAR_ATAC-seq_58


title: BJ_STAR_ATAC-seq_57


title: BJ_STAR_ATAC-seq_56


title: 17492_ZIC2_K562


title: 17496_NRF1_K562


title: BJ_STAR_ATAC-seq_55


title: 22853_PRDM1_K562


title: 17477_HDAC6_K562


title: 17476_BACH1_K562


title: 17474_GTF2A1_K562


title: BJ_STAR_ATAC-seq_52


title: 17473_TERF2_K562


title: 17472_DMTF1_K562


title: BJ_STAR_ATAC-seq_51


title: BJ_STAR_ATAC-seq_50


title: BJ_STAR_ATAC-seq_49


title: 17471_SNAI3_K562


title: 17479_TFCP2_K562


title: BJ_STAR_ATAC-seq_48


title: 22598_LHX4_K562


title: BJ_STAR_ATAC-seq_46


title: 17478_DR1_K562


title: BJ_STAR_ATAC-seq_45


title: BJ_STAR_ATAC-seq_47


title: BJ_STAR_ATAC-seq_44


title: 22599_ID4_K562


title: 22594_JAZF1_K562


title: BJ_STAR_ATAC-seq_54


title: BJ_STAR_ATAC-seq_53


title: BJ_STAR_ATAC-seq_43


title: 17475_NFX1_K562


title: 22596_LHX5_K562


title: 22595_RNF113B_K562


title: BJ_STAR_ATAC-seq_41


title: BJ_STAR_ATAC-seq_42


title: BJ_STAR_ATAC-seq_40


title: BJ_STAR_ATAC-seq_4


title: 22592_SOX12_K562


title: 22591_ZNF18_K562


title: BJ_STAR_ATAC-seq_39


title: 22593_UBE3A_K562


title: BJ_STAR_ATAC-seq_5


title: 17470_DDIT3_K562


title: BJ_STAR_ATAC-seq_38


title: BJ_STAR_ATAC-seq_37


title: 19557_HOPX_K562


title: BJ_STAR_ATAC-seq_35


title: 19556_FOXR1_K562


title: BJ_STAR_ATAC-seq_34


title: BJ_STAR_ATAC-seq_36


title: 19554_ZFYVE19_K562


title: 19555_NINJ2_K562


title: 19550_NKX3_K562


title: 22597_Hsf1_K562


title: BJ_STAR_ATAC-seq_33


title: 19551_FoxO3_K562


title: 19559_USF1_K562


title: BJ_STAR_ATAC-seq_32


title: BJ_STAR_ATAC-seq_30


title: BJ_STAR_ATAC-seq_31


title: BJ_STAR_ATAC-seq_3


title: BJ_STAR_ATAC-seq_29


title: 19088_DDX58_K562


title: 19085_KBTBD10_K562


title: 19089_ZBTB48_K562


title: BJ_STAR_ATAC-seq_25


title: 19083_SOX8_K562


title: BJ_STAR_ATAC-seq_23


title: 22205_TADA3_K562


title: 19084_U2AF1_K562


title: BJ_STAR_ATAC-seq_20


title: BJ_STAR_ATAC-seq_2


title: 22207_ZBTB14_K562


title: BJ_STAR_ATAC-seq_28


title: BJ_STAR_ATAC-seq_27


title: 22204_MXD3_K562


title: 22201_HESX1_K562


title: 23889_ZNF75A-_K562


title: BJ_STAR_ATAC-seq_18


title: 19086_SIRT6_K562


title: BJ_STAR_ATAC-seq_26


title: BJ_STAR_ATAC-seq_16


title: 19087_G3BP2_K562


title: 23885_ZSCAN2-_K562


title: 19080_ZFYVE20_K562


title: 19553_SLC30A9_K562


title: BJ_STAR_ATAC-seq_24


title: 23884_EEA1-_K562


title: 19081_JUNB_K562


title: 19082_DVL3_K562


title: BJ_STAR_ATAC-seq_22


title: BJ_STAR_ATAC-seq_21


title: 23881_PUM2-_K562


title: BJ_STAR_ATAC-seq_10


title: BJ_STAR_ATAC-seq_12


title: BJ_STAR_ATAC-seq_19


title: 22202_USF1_K562


title: BJ_STAR_ATAC-seq_15


title: BJ_STAR_ATAC-seq_14


title: 28317_ELF3-_K562


title: 28311_STAT5B-_K562


title: 23887_ASCL4-_K562