title: patch30

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_30_S263


title: patch29

status: Public on Jul 22 2020

type: SRA

city: Cambridge

first: Joshua

last: Levin

state: MA

address: 75 Ames St

department: Stanley Center

country: USA

institute: Broad Institute

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_2_S212

library_source: transcriptomic

data_processing:
RSEM v1.2.87 was run on raw fastq fileswith default parameters on alignments created by Bowtie on UCSC gene annotation
TPM estimates were tranformed to log space by taking log TPM +1
TopHat2 v2.0.10 was used to map fastq files to mm10 reference
RNASeq-QC was run on the TopHat2 bamfiles to get QC metrics
For TRN and patch-seq samples, cells were removed if they had less than 40% genome mapping rate or or less than 1500 detected genes
Clustering and DE analysis of TRN samples was perfomed with biSNE software (https://github.com/yinqingl/nucseq_analysis), including normalizing the log TPM data to a normalized log TPM
For non-TRN samples, nuclei expressing <1500 genes were removed
Seurat v2.2.0 was used for clustering of the non-TRN samples
Genome_build: mm10
Supplementary_files_format_and_content: Formatted expression matrix (tab deliminated text file) with cells as columns, genes as rows, and TPM values as entries

molecule: total RNA

organism: Mus musculus

source_name: TRN

extract_protocol:
Sucrose gradient nuclei isolation followed by FACS sorting for Violet+, Violet+ GFP+ or Violet+ NeuN+ nuclei
Modified SMARTseq2 single nuclei RNA-Seq

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: Yes

tag: facs sorting signal

tag: plate type

value: Patch-Seq


title: OTTA2014_1400_REPB1

type: RNA

city: Vancouver

first: Michael

middle: S

last: Anglesio

state: BC

department: Obstetrics and Gynecology

country: Canada

institute: University of British Columbia

description: single-sample normalized data

hyb_protocol: NanoString Gene Expression protocol using 500ng of Total RNA as measured by NanoDrop spectrophotmeter. RNA is combined with capture and reporter codesets, and hybridization buffer. Reaction mixtures are hybridized in a thermal cycler at 65C for either short (16H) or long (20H) hybridization. Samples are then washed and fixed to cartridges using the nCounter Prep Station (high-sensitivity mode) for imaging.

scan_protocol: imaging on nCounter Digital Analyzer at maximum FOV

data_processing: Samples data is processed and normalized following protocols described in Talhouk et al (PMID: 27096160) using PrOTYPE. Briefly: Count data is Log2 transformed, the mean of housekeeping genes (ACTB, RPL19, SDHA, POLR1B, and PGK1) subtracted on a per-sample basis, and then normalized relative to reference samples (denoted as Pool1, Pool2, and Pool3). Code available at https://github.com/AlineTalhouk/PrOType

organism: Homo sapiens

source_name: primary high-grade serous tubo-ovarian carcinoma

label_protocol: NanoString probe-specific unique barcode

extract_protocol: Total RNA extracted with the Qiagen miRNeasy FFPE kit (modified protocol)

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes

tag: race/ethnicity

value: white

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time

tag: study entry delay

tag: anatomical site

value: presumed adnexal

tag: experiment site

value: USC

tag: site id

value: LAX


title: OTTA2014_1398_REPB1

description: single-sample normalized data


title: patch35

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_3_S224

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0031_XSite1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: unknown

value: VAN

value: AOC


title: OTTA2014_1405_REPB1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0031_XSite2

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: patch26

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_27_S227


title: OTTA2014_1404_REPB1

description: single-sample normalized data

value: pathogenic BRCA1 mutation

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: patch27

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_28_S239

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: patch25

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_26_S215


title: OTTA2014_2225_XSite2

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: any

value: adnexal


title: patch32

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_32_S287

value: sNuc-seq


title: patch34

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_34_S216

value: Yes


title: OTTA2014_3841_XSite2

description: single-sample normalized data

source_name: primary ovarian carcinoma

value: non-HGSOC

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_2225_XSite3

description: single-sample normalized data

value: HGSOC

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: patch24

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_25_S203

value: Patch-Seq


title: OTTA2014_3841_XSite3

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: patch38

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_6_S260

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: patch23

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_24_S286


title: OTTA2014_3841_XSite0

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: patch28

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_29_S251


title: patch22

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_23_S274


title: patch21

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_22_S262


title: OTTA2014_3840_XSite3

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: patch20

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_21_S250


title: OTTA2014_3840_XSite0

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3840_XSite2

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: patch43

description:
nuclear RNA
TPM.patch.tsv
X1_A10_S10_L004

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: patch19

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_20_S238


title: OTTA2014_2203_XSite3

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: high


title: patch18

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_1_S200


title: patch16

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_18_S214


title: OTTA2014_3839_XSite2

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_2203_XSite2

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: patch17

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_19_S226


title: OTTA2014_3839_XSite3

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: patch12

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_14_S261

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: patch15

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_17_S202


title: patch13

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_15_S273


title: patch11

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_13_S249


title: OTTA2014_3838_XSite2

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3838_XSite0

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: patch9

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_11_S225


title: OTTA2014_3837_XSite2

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3839_XSite0

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: patch8

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_10_S213

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3837_XSite0

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3837_XSite3

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_2175_XSite3

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN1152

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_H9_S381

source_name: Hippocampus

value: No

value: Violet+, GFP+

value: Hippocampus


title: notTRN1150

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: notTRN1151

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_H8_S380


title: OTTA2014_2175_XSite2

description: single-sample normalized data

value: dead

tag: study entry delay

tag: anatomical site

tag: experiment site

value: USC

tag: site id


title: OTTA2014_3838_XSite3

description: single-sample normalized data

value: unknown


title: notTRN1149

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_H6_S378

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2174_XSite3

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: low

value: alive

value: VAN


title: OTTA2014_2174_XSite2

description: single-sample normalized data

tag: Stage

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN1148

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_H5_S377


title: patch10

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_12_S237


title: OTTA2014_2172_XSite3

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: adnexal

value: AOC


title: notTRN1145

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_H2_S374

value: sNuc-seq


title: OTTA2014_2170_XSite2

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2170_XSite3

description: single-sample normalized data


title: OTTA2014_2172_XSite2

description: single-sample normalized data


title: notTRN1146

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_H3_S375

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN1144

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_H1_S373


title: OTTA2014_3836_XSite3

description: single-sample normalized data

tag: diagnosis

value: non-HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN1143


title: notTRN1142


title: notTRN1141

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_H10_S382


title: patch14

description:
nuclear RNA
TPM.patch.tsv
patchseq_170204_16_S285

value: Yes


title: OTTA2014_3836_XSite0

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN1147


title: OTTA2014_3836_XSite2

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN1140


title: OTTA2014_3835_XSite2

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN1139

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_G8_S368

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3835_XSite3

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3834_XSite3

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3835_XSite0

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN1138


title: notTRN1136


title: notTRN1137

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_G6_S366


title: OTTA2014_3834_XSite2

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2138_XSite3

description: single-sample normalized data

value: HGSOC


title: OTTA2014_3834_XSite0

description: single-sample normalized data


title: notTRN1134

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN1132

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_G1_S361


title: notTRN1133

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_G2_S362


title: notTRN1135

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_G4_S364


title: OTTA2014_2138_XSite2

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: high


title: OTTA2014_2134_XSite3

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_2134_XSite2

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN1131

value: No


title: notTRN1130

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_G11_S371

value: Violet+, GFP+


title: notTRN1129

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_G10_S370

value: Hippocampus


title: notTRN1128

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_F9_S357


title: OTTA2014_3833_XSite0

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3833_XSite2

description: single-sample normalized data


title: OTTA2014_3833_XSite3

description: single-sample normalized data


title: notTRN1127

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_F8_S356

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2131_XSite2

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_2131_XSite3

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN1125

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_F6_S354


title: OTTA2014_2124_XSite3

description: single-sample normalized data

value: pathogenic BRCA1 mutation

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN1123

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_F4_S352


title: notTRN1124

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_F5_S353


title: OTTA2014_2124_XSite2

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

value: USC

tag: site id


title: OTTA2014_3832_XSite0

description: single-sample normalized data

value: unknown


title: OTTA2014_3832_XSite2

description: single-sample normalized data


title: notTRN1120

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3832_XSite3

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN1122

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_F3_S351


title: notTRN1119

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_F12_S360


title: notTRN1121


title: OTTA2014_3831_XSite2

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3831_XSite3

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN1118

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_F11_S359


title: OTTA2014_3831_XSite0

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2098_XSite2

description: single-sample normalized data

value: dead

value: omentum


title: OTTA2014_2098_XSite3

description: single-sample normalized data

value: VAN


title: notTRN1117

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_F10_S358

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN1115

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_E8_S344


title: notTRN1126

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_F7_S355


title: notTRN1116

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_E9_S345


title: notTRN1113


title: OTTA2014_2088_XSite2

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: any

value: alive


title: notTRN1114

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_E7_S343


title: OTTA2014_1550_XSite3

description: single-sample normalized data

tag: Stage

value: low

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: presumed adnexal

value: AOC


title: OTTA2014_2088_XSite3

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN1111

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_E4_S340

value: sNuc-seq


title: OTTA2014_1520_XSite1

description: single-sample normalized data

value: HGSOC

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1510_XSite3

description: single-sample normalized data

value: high


title: OTTA2014_1520_XSite3

description: single-sample normalized data


title: OTTA2014_1550_XSite1

description: single-sample normalized data


title: notTRN1112

tag: sample type

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: notTRN1108

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_E1_S337

value: Violet+, GFP+


title: notTRN1109

value: Hippocampus


title: OTTA2014_1509_XSite3

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: adnexal


title: OTTA2014_1510_XSite1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: USC


title: notTRN1106


title: OTTA2014_1990_XSite3

description: single-sample normalized data

value: unknown

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: UKO


title: OTTA2014_1990_XSite1

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN1105

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_E10_S346

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1969_XSite1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1969_XSite3

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN1102

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_D7_S331


title: notTRN1110


title: notTRN1101

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_D6_S330


title: notTRN1100

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_D5_S329


title: notTRN1099

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_D4_S328


title: notTRN1107

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_E12_S348


title: OTTA2014_1451_XSite3

description: single-sample normalized data

value: pathogenic BRCA1 mutation

value: white

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: POC


title: OTTA2014_1942_XSite1

description: single-sample normalized data

value: alive

tag: study entry delay

tag: anatomical site

tag: experiment site

value: VAN

tag: site id


title: OTTA2014_1890_XSite3

description: single-sample normalized data

value: dead


title: OTTA2014_1890_XSite1

description: single-sample normalized data


title: notTRN1096

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN1097

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_D2_S326


title: OTTA2014_1509_XSite1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: low


title: notTRN1095

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_D12_S336

value: sNuc-seq


title: notTRN1104

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_D9_S333


title: notTRN1094


title: notTRN1093


title: notTRN1092

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_C9_S321


title: notTRN1103

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_D8_S332


title: OTTA2014_1444_XSite1

description: single-sample normalized data

value: HGSOC

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes

tag: race/ethnicity


title: OTTA2014_1444_XSite3

description: single-sample normalized data

value: high

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: AOC


title: OTTA2014_1451_XSite1

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1942_XSite3

description: single-sample normalized data


title: notTRN1091

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_C8_S320

tag: sample type

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+, GFP+

tag: plate type

value: Hippocampus


title: OTTA2014_1428_XSite1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: unknown

value: adnexal


title: OTTA2014_1442_XSite1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN1098

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_D3_S327


title: notTRN1090


title: notTRN1089


title: OTTA2014_0481_XSite1

description: single-sample normalized data

value: any

value: hispanic

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: presumed adnexal


title: OTTA2014_0470_XSite2

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

value: USC

tag: site id


title: OTTA2014_0481_XSite2

description: single-sample normalized data


title: notTRN1088

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1442_XSite3

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: white

value: POC


title: notTRN1087


title: notTRN1086


title: notTRN1085


title: OTTA2014_0470_XSite1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: dead

value: VAN


title: OTTA2014_1428_XSite3

description: single-sample normalized data

value: HGSOC

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0469_XSite2

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN1083

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_C12_S324

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN1084


title: notTRN1082


title: notTRN1081


title: notTRN1080

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_B9_S309


title: OTTA2014_0462_XSite2

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: high

value: pathogenic BRCA1 mutation


title: notTRN1079

value: No


title: OTTA2014_0462_XSite1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: AOC


title: OTTA2014_0382_XSite2

description: single-sample normalized data

value: all wildtypes

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN1077

value: Violet+, GFP+

value: Hippocampus


title: OTTA2014_0382_XSite1

description: single-sample normalized data

value: any

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0276_XSite2

description: single-sample normalized data

value: low

value: unknown


title: notTRN1078

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_B7_S307

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0164_XSite1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: hispanic

value: presumed adnexal


title: notTRN1076


title: OTTA2014_0276_XSite1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: white


title: OTTA2014_0164_XSite2

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time

value: USC


title: notTRN1074


title: notTRN1073


title: OTTA2014_3830_XSite2

description: single-sample normalized data

value: non-HGSOC

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0159_XSite2

description: single-sample normalized data

value: HGSOC

value: adnexal


title: OTTA2014_0159_XSite1

description: single-sample normalized data

value: high

value: VAN


title: notTRN1072

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: OTTA2014_3830_XSite1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: AOC


title: OTTA2014_3830_XSite0

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0469_XSite1

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN1070

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_B11_S311

value: Violet+, GFP+

value: Hippocampus


title: OTTA2014_0040_XSite2

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN1069

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_B10_S310

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0040_XSite1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN1075


title: OTTA2014_0034_XSite1

description: single-sample normalized data

tag: Stage

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: alive


title: OTTA2014_2552_REPT1

description: single-sample normalized data

value: unknown

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: WMH


title: notTRN1066

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_A7_S295


title: notTRN1065

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_A6_S294


title: notTRN1063


title: notTRN1067

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_A8_S296


title: OTTA2014_2498_REPT1

description: single-sample normalized data

value: low

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN1062

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2322_REPT1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: peritoneal


title: OTTA2014_2395_REPT1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: pathogenic BRCA1 mutation

tag: race/ethnicity


title: OTTA2014_2383_REPT1

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time

value: omentum


title: notTRN1061

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_A2_S290


title: notTRN1071

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_B12_S312


title: notTRN1060

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_A1_S289


title: notTRN1059

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_2261_REPT1

description: single-sample normalized data

value: HGSOC

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

tag: site id


title: OTTA2014_2203_REPT1

description: single-sample normalized data

value: high

value: VAN


title: notTRN1058

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_A11_S299

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: OTTA2014_0034_XSite2

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: white

value: presumed adnexal

value: USC

value: AOC


title: OTTA2014_2130_REPT1

description: single-sample normalized data

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_2197_REPT1

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: alive

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2192_REPT1

description: single-sample normalized data

value: any

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN1068

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_A9_S297

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+, GFP+

tag: plate type

value: Hippocampus


title: notTRN1057

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p5_A10_S298


title: OTTA2014_2117_REPT1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: dead


title: notTRN1056

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_H9_S285


title: notTRN1064


title: OTTA2014_2089_REPT1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: omentum


title: OTTA2014_2338_REPT1

description: single-sample normalized data

value: HGSOC

value: pathogenic BRCA2 mutation

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN1055

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_H8_S284


title: OTTA2014_2065_REPT1

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

tag: site id


title: notTRN1053

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN1052

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_H5_S281


title: notTRN1054

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_H7_S283


title: notTRN1049

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_H2_S278


title: notTRN1050

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_H3_S279


title: notTRN1051

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_H4_S280


title: notTRN1047


title: OTTA2014_1523_REPT1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: high


title: OTTA2014_1963_REPT1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: UKO


title: notTRN1048

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_H1_S277

value: sNuc-seq

value: No


title: notTRN1044

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_G9_S273


title: OTTA2014_1903_REPT1

description: single-sample normalized data

value: low

value: white

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN1045

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_H10_S286


title: OTTA2014_3725_REPT1

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: presumed adnexal

tag: experiment site

value: USC

tag: site id

value: TRI


title: notTRN1043

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_G8_S272

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN1046


title: OTTA2014_3701_REPT1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: alive


title: OTTA2014_3615_REPT1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3574_REPT1

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: AOC

value: SRF


title: OTTA2014_3484_REPT1

description: single-sample normalized data

value: any

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1706_REPT1

description: single-sample normalized data

value: unknown

value: all wildtypes

value: dead

value: SEA


title: notTRN1042

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_G7_S271

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+, GFP+

tag: plate type

value: Hippocampus


title: OTTA2014_1826_REPT1

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN1041

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_G6_S270

value: sNuc-seq

value: No


title: OTTA2014_1727_REPT1

description: single-sample normalized data

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: white


title: OTTA2014_1641_REPT1

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: presumed adnexal

value: USC


title: OTTA2014_1647_REPT1

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2062_REPT1

description: single-sample normalized data

value: pathogenic BRCA1 mutation

value: omentum

value: VAN


title: notTRN1040

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_G5_S269

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1571_REPT1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: alive

value: RTR


title: notTRN1038

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_G3_S267


title: notTRN1039

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_G4_S268


title: OTTA2014_1557_REPT1

description: single-sample normalized data

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: AOC


title: notTRN1037

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: notTRN1036


title: OTTA2014_3434_REPT1

description: single-sample normalized data

value: low

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time

value: POL


title: notTRN1035

value: Violet+, GFP+

value: Hippocampus


title: notTRN1034

value: sNuc-seq

value: No


title: OTTA2014_1502_REPT1

description: single-sample normalized data

value: HGSOC

value: high

value: all wildtypes

value: white

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

tag: site id

value: POC


title: notTRN1032

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_F9_S261

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN1031

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_F8_S260


title: notTRN1030

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_F7_S259


title: notTRN1028

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_F5_S257


title: notTRN1033


title: OTTA2014_3390_REPT1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: any

value: presumed adnexal

value: VAN

value: NCO


title: OTTA2014_3267_REPT1

description: single-sample normalized data

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1428_REPT1

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time

value: USC


title: OTTA2014_3316_REPT1

description: single-sample normalized data

value: hispanic

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3298_REPT1

description: single-sample normalized data

value: low

value: alive


title: OTTA2014_3311_REPT1

description: single-sample normalized data


title: OTTA2014_3263_REPT1

description: single-sample normalized data


title: OTTA2014_3234_REPT1

description: single-sample normalized data


title: notTRN1029

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_F6_S258

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+, GFP+

tag: plate type

value: Hippocampus


title: notTRN1027

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_F4_S256


title: OTTA2014_3065_REPT1

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: high

value: white


title: notTRN1026

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_F3_S255


title: notTRN1025

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_F2_S254


title: OTTA2014_3061_REPT1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3029_REPT1

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2959_REPT1

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id

value: MAY


title: notTRN1023

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_F12_S264

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN1024

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_F1_S253


title: notTRN1022

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_F11_S263


title: notTRN1021

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_F10_S262


title: notTRN1020

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_E9_S249


title: OTTA2014_2925_REPT1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: any

value: presumed adnexal


title: OTTA2014_3130_REPT1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: VAN

value: NCO


title: OTTA2014_2917_REPT1

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN1019

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_E8_S248


title: notTRN1018

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_E7_S247


title: notTRN1017

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_E6_S246


title: notTRN1015

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_E4_S244


title: notTRN1016

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_2675_REPT1

description: single-sample normalized data

value: all wildtypes

value: dead

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

tag: site id


title: OTTA2014_1394_REPT1

description: single-sample normalized data

value: low

value: unknown

value: USC

value: GER


title: OTTA2014_0685_REPT1

description: single-sample normalized data

value: pathogenic BRCA1 mutation

value: hispanic

value: alive

value: CNI


title: OTTA2014_1419_REPT1

description: single-sample normalized data

value: HGSOC

value: high

value: white

value: LAX


title: OTTA2014_3800_REPT1

description: single-sample normalized data

value: BRO


title: notTRN1012

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_E1_S241

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+, GFP+

tag: plate type

value: Hippocampus


title: notTRN1011


title: OTTA2014_2949_REPT1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: presumed adnexal

value: MAY


title: OTTA2014_0620_REPT1

description: single-sample normalized data

tag: Stage

value: low

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: USC

value: AOV


title: notTRN1010


title: notTRN1009

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_E10_S250


title: OTTA2014_2786_REPT1

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time

value: adnexal


title: notTRN1008

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_D9_S237


title: OTTA2014_0574_REPT1

description: single-sample normalized data

value: HGSOC

value: alive

tag: study entry delay

tag: anatomical site

tag: experiment site

value: AOC

tag: site id


title: OTTA2014_2771_REPT1

description: single-sample normalized data

value: high

value: all wildtypes

value: white


title: OTTA2014_0590_REPT1

description: single-sample normalized data

value: any


title: notTRN1007

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_D8_S236

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+, GFP+

tag: plate type


title: OTTA2014_2645_REPT1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: presumed adnexal

value: HAW


title: notTRN1014

value: Hippocampus


title: notTRN1005


title: notTRN1006

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_D7_S235


title: notTRN1013


title: OTTA2014_1415_REPT1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: pathogenic BRCA2 mutation

tag: race/ethnicity

value: hispanic

value: USC

value: LAX


title: OTTA2014_0448_REPT1

description: single-sample normalized data

value: HGSOC

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time

value: adnexal


title: OTTA2014_0474_REPT1

description: single-sample normalized data

value: high

tag: study entry delay

tag: anatomical site

tag: experiment site

value: AOC

tag: site id


title: OTTA2014_3810_REPT1

description: single-sample normalized data

value: unknown

value: BRO


title: OTTA2014_0382_REPT1

description: single-sample normalized data

value: any

value: all wildtypes

value: white


title: OTTA2014_0354_REPT1

description: single-sample normalized data


title: notTRN1003

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_D4_S232

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+, GFP+

tag: plate type


title: OTTA2014_0320_REPT1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: alive

value: peritoneal


title: notTRN1000

value: Hippocampus


title: notTRN1004


title: notTRN1002


title: OTTA2014_0311_REPT1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: omentum


title: OTTA2014_0318_REPT1

description: single-sample normalized data

value: HGSOC

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0289_REPT1

description: single-sample normalized data

value: hispanic

value: dead

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0261_REPT1

description: single-sample normalized data

value: high


title: OTTA2014_0276_REPT1

description: single-sample normalized data

value: low

value: presumed adnexal

value: AOC


title: notTRN999

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_D12_S240

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN997

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_D10_S238


title: notTRN996

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_C9_S225


title: notTRN995

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_C8_S224


title: OTTA2014_0224_REPT1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: any


title: OTTA2014_0159_REPT1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes

tag: race/ethnicity

value: adnexal


title: OTTA2014_0164_REPT1

description: single-sample normalized data

value: unknown

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN994

value: sNuc-seq

value: No


title: notTRN993

value: Violet+, GFP+


title: notTRN991


title: OTTA2014_0157_REPT1

description: single-sample normalized data

value: white

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN992

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_C5_S221

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type

value: Hippocampus


title: notTRN1001


title: notTRN990


title: OTTA2014_0139_REPT1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN989


title: OTTA2014_0096_REPT1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: alive

value: omentum


title: OTTA2014_0034_REPT1

description: single-sample normalized data

value: HGSOC

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN998

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_D11_S239


title: OTTA2014_0154_REPT1

description: single-sample normalized data

value: dead

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN988

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN987

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_C12_S228


title: OTTA2014_1290_REPT1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: high

value: VAN

value: DOV


title: notTRN986

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_C11_S227


title: notTRN985

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_C10_S226


title: notTRN983

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_B8_S212


title: OTTA2014_1085_REPT1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN984

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_B9_S213


title: OTTA2014_1093_REPT1

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1016_REPT1

description: single-sample normalized data

value: low

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1040_REPT1

description: single-sample normalized data


title: OTTA2014_1028_REPT1

description: single-sample normalized data


title: notTRN982

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN981


title: OTTA2014_1004_REPT1

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0936_REPT1

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1348_REPT1

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0917_REPT1

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN980

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_B5_S209

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN978


title: notTRN977


title: OTTA2014_3829_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: USC

value: BRO


title: notTRN979


title: OTTA2014_3828_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: peritoneal


title: OTTA2014_3827_Clinical

description: single-sample normalized data

value: unknown

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: adnexal


title: OTTA2014_3826_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN975

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_B12_S216

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: notTRN976

value: Violet+, GFP+


title: OTTA2014_3825_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3824_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN974

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_B11_S215

value: Hippocampus


title: notTRN973


title: OTTA2014_3823_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: upper genital track


title: OTTA2014_3822_Clinical

description: single-sample normalized data

value: alive

tag: study entry delay

tag: anatomical site

value: omentum

tag: experiment site

tag: site id


title: notTRN972

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_A9_S201

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN971


title: notTRN970


title: OTTA2014_3820_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: dead


title: OTTA2014_3821_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN969


title: notTRN968


title: OTTA2014_3819_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN967


title: OTTA2014_3817_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN966

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN964


title: notTRN963

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_A12_S204


title: OTTA2014_3815_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN965


title: OTTA2014_3814_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN961

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p4_A10_S202


title: OTTA2014_3813_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN960

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_H9_S189


title: OTTA2014_3812_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN959

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_H8_S188

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN958

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_H7_S187


title: notTRN962


title: OTTA2014_3810_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN957

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_H6_S186


title: OTTA2014_3808_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3809_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN956

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_H5_S185


title: notTRN955


title: OTTA2014_3807_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3806_Clinical

description: single-sample normalized data


title: OTTA2014_3816_Clinical

description: single-sample normalized data


title: OTTA2014_3805_Clinical

description: single-sample normalized data


title: notTRN954

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_H3_S183

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3804_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN953

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_H2_S182


title: notTRN952

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_H1_S181


title: OTTA2014_3803_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN951


title: OTTA2014_3801_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN949

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_H10_S190


title: OTTA2014_3800_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN948

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_G9_S177

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3798_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: presumed adnexal


title: OTTA2014_3811_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3799_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN947

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_G8_S176


title: OTTA2014_3797_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN946

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_G7_S175

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3796_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN945

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_3795_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3794_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN942


title: notTRN941


title: notTRN944

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_G5_S173


title: notTRN943

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_G4_S172


title: OTTA2014_3818_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3793_Clinical

description: single-sample normalized data


title: OTTA2014_3791_Clinical

description: single-sample normalized data


title: OTTA2014_3792_Clinical

description: single-sample normalized data


title: OTTA2014_3802_Clinical

description: single-sample normalized data


title: OTTA2014_3790_Clinical

description: single-sample normalized data


title: notTRN939

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN950

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_H11_S191


title: notTRN940

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_G1_S169


title: notTRN938

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_G11_S179


title: notTRN937

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_G10_S178


title: notTRN936

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_F9_S165


title: OTTA2014_3787_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN935

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_F8_S164


title: notTRN933

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_F6_S162


title: OTTA2014_3786_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN932

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_F5_S161


title: OTTA2014_3785_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3784_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3782_Clinical

description: single-sample normalized data


title: OTTA2014_3783_Clinical

description: single-sample normalized data


title: notTRN931

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_F4_S160

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3781_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN929

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_F2_S158


title: notTRN930

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_F3_S159


title: OTTA2014_3789_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3778_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3788_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN925

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_F10_S166

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3777_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3775_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3776_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN924

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_E9_S153


title: OTTA2014_3774_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN934

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_F7_S163

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN926

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_F11_S167


title: OTTA2014_3773_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN922

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_E7_S151


title: notTRN923

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_3772_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN921

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_E6_S150


title: notTRN927

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_F12_S168


title: OTTA2014_3780_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3779_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN918

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_E3_S147

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3768_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN928

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_F1_S157


title: notTRN920

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_E5_S149


title: notTRN913


title: OTTA2014_3769_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN919

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_E4_S148


title: OTTA2014_3764_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3763_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN912

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3771_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3761_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN917


title: OTTA2014_3759_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3767_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN916

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_E1_S145

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN915


title: notTRN906


title: OTTA2014_3757_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3758_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3765_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN914

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_E11_S155


title: notTRN911

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_D8_S140


title: OTTA2014_3754_Clinical

description: single-sample normalized data

value: high

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id

value: TRI


title: OTTA2014_3762_Clinical

description: single-sample normalized data

value: USC


title: OTTA2014_3770_Clinical

description: single-sample normalized data

value: BRO


title: notTRN910

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_D7_S139

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN901

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_D10_S142


title: OTTA2014_3760_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: peritoneal


title: notTRN908

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_D5_S137


title: notTRN909


title: OTTA2014_3752_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3756_Clinical

description: single-sample normalized data

value: any

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3766_Clinical

description: single-sample normalized data

value: unknown

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

tag: site id


title: OTTA2014_3751_Clinical

description: single-sample normalized data


title: notTRN899

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: OTTA2014_3750_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3749_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN907

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_D4_S136

value: Violet+, GFP+

value: Hippocampus


title: notTRN905


title: notTRN898

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_C7_S127


title: OTTA2014_3748_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: alive

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3755_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN904

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_D1_S133

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN902

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_D11_S143


title: OTTA2014_3747_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN900

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: notTRN897


title: notTRN903

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_D12_S144


title: OTTA2014_3746_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN896


title: OTTA2014_3753_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN893

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_C2_S122


title: notTRN892

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_C1_S121


title: notTRN891

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_C12_S132


title: OTTA2014_3744_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3741_Clinical

description: single-sample normalized data


title: notTRN889

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3740_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN888

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_B9_S117


title: notTRN895


title: notTRN887

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_B8_S116


title: OTTA2014_3738_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN884


title: notTRN894


title: notTRN886


title: OTTA2014_3736_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3745_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3735_Clinical

description: single-sample normalized data


title: notTRN883

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3742_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN890

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_C11_S131


title: OTTA2014_3731_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3743_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN881


title: OTTA2014_3739_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3737_Clinical

description: single-sample normalized data


title: OTTA2014_3729_Clinical

description: single-sample normalized data


title: notTRN878

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_B11_S119

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN885


title: notTRN877


title: notTRN879

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_B12_S120


title: OTTA2014_3733_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3727_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3734_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN882


title: notTRN880

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_B1_S109


title: notTRN875


title: OTTA2014_3732_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3730_Clinical

description: single-sample normalized data


title: OTTA2014_3723_Clinical

description: single-sample normalized data


title: notTRN876

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN871


title: OTTA2014_3721_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3728_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3726_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3719_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3725_Clinical

description: single-sample normalized data


title: notTRN868

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_A1_S97

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN874

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_A7_S103


title: OTTA2014_3724_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN873

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_A6_S102


title: notTRN872


title: OTTA2014_3717_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3722_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN870


title: notTRN864

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_H9_S93

source_name: M2 Cortex

value: M2 Cortex


title: notTRN869


title: OTTA2014_3720_Clinical

description: single-sample normalized data

value: HGSOC

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN862

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN867

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_A12_S108


title: OTTA2014_3713_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3718_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN865


title: notTRN861

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_H6_S90


title: notTRN866

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p3_A11_S107


title: notTRN863

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_H8_S92


title: OTTA2014_3712_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3714_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3715_Clinical

description: single-sample normalized data


title: notTRN857

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_H2_S86

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN860

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_H5_S89


title: OTTA2014_3710_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN859

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_3709_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: dead


title: notTRN856

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_H1_S85


title: notTRN855


title: OTTA2014_3716_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: presumed adnexal


title: notTRN854

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_H11_S95


title: notTRN853

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_H10_S94


title: OTTA2014_3711_Clinical

description: single-sample normalized data

value: high

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3708_Clinical

description: single-sample normalized data

value: TRI


title: OTTA2014_3706_Clinical

description: single-sample normalized data

value: USC


title: OTTA2014_3703_Clinical

description: single-sample normalized data


title: OTTA2014_3707_Clinical

description: single-sample normalized data


title: OTTA2014_3704_Clinical

description: single-sample normalized data


title: OTTA2014_3702_Clinical

description: single-sample normalized data


title: OTTA2014_3701_Clinical

description: single-sample normalized data


title: notTRN858

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_H3_S87

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3699_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3700_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN852

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_G9_S81


title: OTTA2014_3698_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN845


title: notTRN851


title: notTRN850

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_G7_S79


title: notTRN846

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_G3_S75


title: notTRN848


title: OTTA2014_3695_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3696_Clinical

description: single-sample normalized data


title: OTTA2014_3705_Clinical

description: single-sample normalized data


title: OTTA2014_3697_Clinical

description: single-sample normalized data


title: OTTA2014_3693_Clinical

description: single-sample normalized data


title: notTRN842

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_G11_S83

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN849

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_G6_S78


title: notTRN841

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_G10_S82


title: notTRN840

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_F9_S69


title: notTRN839

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_F8_S68


title: notTRN838

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_F7_S67


title: OTTA2014_3690_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN847

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_G4_S76


title: notTRN844


title: notTRN837

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_F6_S66


title: OTTA2014_3688_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3687_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3692_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN836

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_F5_S65

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN835

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_F4_S64


title: OTTA2014_3686_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN833

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_F2_S62


title: OTTA2014_3685_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3694_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN832

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_F1_S61


title: notTRN831

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_F12_S72


title: OTTA2014_3684_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN834

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_F3_S63

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3689_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3681_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3682_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3680_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3679_Clinical

description: single-sample normalized data


title: notTRN828

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_E9_S57

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN829

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_F10_S70


title: notTRN830

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: notTRN827

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_E8_S56


title: notTRN826

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_E7_S55


title: OTTA2014_3683_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN825

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_E6_S54


title: notTRN821

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_E2_S50


title: OTTA2014_3673_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3674_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3676_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN824

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_E5_S53

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3675_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN822

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_E3_S51


title: OTTA2014_3671_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN819

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_E12_S60


title: OTTA2014_3669_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3670_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN823

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_E4_S52

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3672_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN820

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_E1_S49


title: notTRN818

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_E11_S59


title: notTRN843


title: notTRN817

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_E10_S58


title: OTTA2014_3677_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3667_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN816

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_D9_S45


title: OTTA2014_3678_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3666_Clinical

description: single-sample normalized data


title: OTTA2014_3691_Clinical

description: single-sample normalized data


title: OTTA2014_3668_Clinical

description: single-sample normalized data


title: notTRN815

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_D8_S44

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN814

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_D7_S43


title: notTRN813


title: OTTA2014_3665_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3663_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3664_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN812

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_D5_S41


title: notTRN811

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_D4_S40


title: OTTA2014_3662_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN810

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_D3_S39

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3660_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3661_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN809

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_D2_S38


title: OTTA2014_3659_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN808

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_D1_S37


title: OTTA2014_3658_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN807

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_D12_S48

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN806

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_3657_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3656_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN804

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_C9_S33


title: notTRN803

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_C8_S32


title: OTTA2014_3654_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3653_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN800

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_C5_S29

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3651_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3650_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN805

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_D10_S46


title: notTRN802

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_C7_S31


title: OTTA2014_3655_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN801

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_C6_S30


title: OTTA2014_3652_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN797

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3647_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3648_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3644_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3646_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN793

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_C10_S34

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN790

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_B7_S19


title: notTRN792


title: notTRN799

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_C4_S28


title: notTRN798


title: notTRN795


title: OTTA2014_3640_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN791

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_B8_S20


title: OTTA2014_3643_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN796

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_C1_S25


title: OTTA2014_3645_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN794

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_C11_S35


title: OTTA2014_3638_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN787

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_B4_S16

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3641_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN789

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_B6_S18


title: OTTA2014_3649_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN785


title: notTRN788

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_B5_S17


title: notTRN786

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_B3_S15


title: OTTA2014_3637_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3636_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id