title: TRN842

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_G11_S110


title: TRN843

status: Public on Jul 22 2020

type: SRA

city: Cambridge

first: Joshua

last: Levin

state: MA

address: 75 Ames St

department: Stanley Center

country: USA

institute: Broad Institute

description:
nuclear RNA
TPM.TRN.tsv
no processed data

library_source: transcriptomic

data_processing:
RSEM v1.2.87 was run on raw fastq fileswith default parameters on alignments created by Bowtie on UCSC gene annotation
TPM estimates were tranformed to log space by taking log TPM +1
TopHat2 v2.0.10 was used to map fastq files to mm10 reference
RNASeq-QC was run on the TopHat2 bamfiles to get QC metrics
For TRN and patch-seq samples, cells were removed if they had less than 40% genome mapping rate or or less than 1500 detected genes
Clustering and DE analysis of TRN samples was perfomed with biSNE software (https://github.com/yinqingl/nucseq_analysis), including normalizing the log TPM data to a normalized log TPM
For non-TRN samples, nuclei expressing <1500 genes were removed
Seurat v2.2.0 was used for clustering of the non-TRN samples
Genome_build: mm10
Supplementary_files_format_and_content: Formatted expression matrix (tab deliminated text file) with cells as columns, genes as rows, and TPM values as entries

molecule: total RNA

organism: Mus musculus

source_name: TRN

extract_protocol:
Sucrose gradient nuclei isolation followed by FACS sorting for Violet+, Violet+ GFP+ or Violet+ NeuN+ nuclei
Modified SMARTseq2 single nuclei RNA-Seq

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+

tag: plate type

value: TRN no Neun selection


title: OTTA2014_1295_Clinical

type: RNA

city: Vancouver

first: Michael

middle: S

last: Anglesio

state: BC

department: Obstetrics and Gynecology

country: Canada

institute: University of British Columbia

description: single-sample normalized data

hyb_protocol: NanoString Gene Expression protocol using 500ng of Total RNA as measured by NanoDrop spectrophotmeter. RNA is combined with capture and reporter codesets, and hybridization buffer. Reaction mixtures are hybridized in a thermal cycler at 65C for either short (16H) or long (20H) hybridization. Samples are then washed and fixed to cartridges using the nCounter Prep Station (high-sensitivity mode) for imaging.

scan_protocol: imaging on nCounter Digital Analyzer at maximum FOV

data_processing: Samples data is processed and normalized following protocols described in Talhouk et al (PMID: 27096160) using PrOTYPE. Briefly: Count data is Log2 transformed, the mean of housekeeping genes (ACTB, RPL19, SDHA, POLR1B, and PGK1) subtracted on a per-sample basis, and then normalized relative to reference samples (denoted as Pool1, Pool2, and Pool3). Code available at https://github.com/AlineTalhouk/PrOType

organism: Homo sapiens

source_name: primary high-grade serous tubo-ovarian carcinoma

label_protocol: NanoString probe-specific unique barcode

extract_protocol: Total RNA extracted with the Qiagen miRNeasy FFPE kit (modified protocol)

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

tag: Stage

value: high

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

value: VAN

tag: site id

value: DOV


title: TRN841

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN840

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_F9_S124


title: OTTA2014_1294_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1293_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1292_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN839

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_F8_S125


title: TRN838

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_F7_S126


title: OTTA2014_1289_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN849

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN837


title: OTTA2014_1288_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN836

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_F5_S128


title: TRN835

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_F4_S129


title: OTTA2014_1287_Clinical

description: single-sample normalized data

tag: Stage

value: low

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1286_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1285_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1284_Clinical

description: single-sample normalized data


title: TRN834

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN833

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_F2_S131


title: TRN832

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_F1_S132


title: OTTA2014_1282_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1283_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN831

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_F12_S121


title: TRN830

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_F11_S122


title: TRN829

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_F10_S123


title: OTTA2014_1280_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1291_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1290_Clinical

description: single-sample normalized data


title: OTTA2014_1281_Clinical

description: single-sample normalized data


title: OTTA2014_1279_Clinical

description: single-sample normalized data


title: TRN828

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_E9_S136

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN826

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_E7_S138


title: TRN827


title: OTTA2014_1278_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN824

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_E5_S140


title: OTTA2014_1276_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1277_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1275_Clinical

description: single-sample normalized data

value: white

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN823

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_E4_S141

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1274_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: hispanic


title: OTTA2014_1273_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: alive


title: TRN822


title: TRN825

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_E6_S139


title: TRN821

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_E2_S143


title: OTTA2014_1272_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1271_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN820

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_E1_S144

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN819

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_E12_S133


title: OTTA2014_1270_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN818

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_E11_S134


title: OTTA2014_1269_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN816

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_D9_S148


title: OTTA2014_1267_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN817

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_E10_S135


title: TRN815

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: TRN814


title: TRN813


title: TRN812


title: OTTA2014_1266_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1264_Clinical

description: single-sample normalized data


title: OTTA2014_1263_Clinical

description: single-sample normalized data


title: OTTA2014_1265_Clinical

description: single-sample normalized data


title: OTTA2014_1268_Clinical

description: single-sample normalized data


title: TRN811

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN808


title: TRN809

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_D2_S155


title: TRN807

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_D12_S145


title: TRN806


title: OTTA2014_1261_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1258_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1257_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1259_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN805

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1255_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN804

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_C9_S160


title: TRN803

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_C8_S161


title: OTTA2014_1254_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1262_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN802

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_C7_S162


title: TRN801


title: TRN810

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_D3_S154


title: TRN800

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_C5_S164


title: TRN797


title: TRN799


title: OTTA2014_1253_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1260_Clinical

description: single-sample normalized data


title: OTTA2014_1252_Clinical

description: single-sample normalized data


title: TRN798

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1251_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1256_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1250_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1247_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN796

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_C1_S168

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1246_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1249_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN794

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_C11_S158


title: TRN793

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_C10_S159


title: OTTA2014_1248_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN792

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_B9_S172


title: TRN795

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_C12_S157


title: OTTA2014_1242_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1243_Clinical

description: single-sample normalized data


title: OTTA2014_1241_Clinical

description: single-sample normalized data


title: TRN791

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN790


title: TRN789


title: OTTA2014_1240_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN788

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_B5_S176


title: OTTA2014_1239_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1238_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN785

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_B2_S179


title: TRN786

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_B3_S178


title: TRN784


title: OTTA2014_1245_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN787

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_B4_S177

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1244_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1236_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1234_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN782

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_B11_S170


title: OTTA2014_1235_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN781

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_B10_S171

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN780

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: OTTA2014_1232_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1231_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1233_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN779

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_A8_S185


title: TRN778

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_A7_S186


title: TRN777

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_A6_S187


title: OTTA2014_1230_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1228_Clinical

description: single-sample normalized data


title: OTTA2014_1227_Clinical

description: single-sample normalized data


title: OTTA2014_1229_Clinical

description: single-sample normalized data


title: OTTA2014_1226_Clinical

description: single-sample normalized data


title: TRN775

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_A4_S189

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1225_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1237_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN774


title: TRN773


title: TRN772

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_A1_S192


title: OTTA2014_1224_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN783

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_B12_S169


title: TRN771


title: OTTA2014_1222_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1221_Clinical

description: single-sample normalized data


title: OTTA2014_1223_Clinical

description: single-sample normalized data


title: TRN768

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1220_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN770

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_A11_S182


title: OTTA2014_1219_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN766

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_H7_S198


title: OTTA2014_1218_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN767


title: OTTA2014_1217_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1216_Clinical

description: single-sample normalized data


title: TRN763

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1215_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN776

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_A5_S188


title: OTTA2014_1213_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1214_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1211_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1212_Clinical

description: single-sample normalized data


title: TRN761

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_H2_S203

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN760

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_H1_S204


title: TRN769

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_A10_S183


title: OTTA2014_1210_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN759


title: TRN758

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_H11_S194


title: TRN757

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_H10_S195


title: OTTA2014_1208_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1207_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN756

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_G9_S208


title: OTTA2014_1209_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1206_Clinical

description: single-sample normalized data


title: TRN755

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN764

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_H5_S200


title: TRN765

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_H6_S199


title: TRN753

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: TRN754


title: TRN752

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_G5_S212


title: TRN762


title: OTTA2014_1202_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN751

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_G4_S213


title: TRN750


title: OTTA2014_1201_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1200_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1199_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN749

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_G2_S215

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN748

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_G1_S216


title: TRN746


title: OTTA2014_1197_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN745

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_G10_S207


title: OTTA2014_1198_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1195_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1196_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1205_Clinical

description: single-sample normalized data


title: TRN742

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN747


title: OTTA2014_1203_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1204_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1194_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN741


title: TRN739


title: TRN744


title: OTTA2014_1192_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1193_Clinical

description: single-sample normalized data


title: OTTA2014_1190_Clinical

description: single-sample normalized data


title: OTTA2014_1191_Clinical

description: single-sample normalized data


title: TRN743

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_F8_S221

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1188_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1189_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN737


title: OTTA2014_1187_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN738

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_F3_S226


title: TRN735


title: OTTA2014_1186_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1185_Clinical

description: single-sample normalized data


title: TRN734

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN733


title: TRN732


title: TRN731


title: TRN740


title: OTTA2014_1184_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1182_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1181_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN730


title: OTTA2014_1180_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN729

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_E6_S235

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN727


title: TRN728


title: OTTA2014_1179_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1178_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN726

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_E3_S238


title: TRN725


title: TRN723


title: TRN722

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_E11_S230


title: TRN721


title: OTTA2014_1175_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1174_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1177_Clinical

description: single-sample normalized data


title: OTTA2014_1171_Clinical

description: single-sample normalized data


title: OTTA2014_1183_Clinical

description: single-sample normalized data


title: TRN719

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN720

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_D9_S244


title: TRN718

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_D7_S246


title: TRN717


title: OTTA2014_1169_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN715

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_D4_S249


title: OTTA2014_1168_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1166_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1167_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1165_Clinical

description: single-sample normalized data


title: TRN716

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN724

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_E1_S240


title: TRN714

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_D3_S250


title: OTTA2014_1170_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1176_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1173_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1164_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1172_Clinical

description: single-sample normalized data


title: OTTA2014_1162_Clinical

description: single-sample normalized data


title: OTTA2014_1163_Clinical

description: single-sample normalized data


title: TRN711

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN736

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_F1_S228


title: OTTA2014_1161_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN710

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_D11_S242


title: TRN709

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_D10_S243


title: OTTA2014_1159_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1160_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1158_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN708

description:
nuclear RNA
TPM.TRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1157_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN706

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_C7_S258


title: OTTA2014_1156_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN703

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_C4_S261


title: TRN704


title: TRN713

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_D2_S251


title: TRN705


title: TRN701

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_C2_S263


title: OTTA2014_1155_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1152_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN702

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_C3_S262

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1153_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN700

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_C1_S264


title: TRN712


title: OTTA2014_1154_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1151_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1150_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN697

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN699


title: OTTA2014_1148_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN696

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_B9_S268


title: TRN707

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_C8_S257


title: OTTA2014_1147_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1146_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN695


title: OTTA2014_1149_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN694

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1145_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1144_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN693

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_B6_S271


title: OTTA2014_1143_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1142_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN692

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_B5_S272

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN691


title: TRN690

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_B3_S274


title: TRN698

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_C11_S254


title: OTTA2014_1139_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN689

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_B2_S275


title: OTTA2014_1141_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1138_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1140_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN686

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_B11_S266

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN688


title: TRN687


title: TRN685


title: TRN684


title: OTTA2014_1136_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1137_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN683


title: OTTA2014_1135_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN681

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_A6_S283


title: OTTA2014_1134_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1133_Clinical

description: single-sample normalized data


title: OTTA2014_1131_Clinical

description: single-sample normalized data


title: TRN680

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_A5_S284

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1129_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN679

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_A4_S285


title: TRN678

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_A3_S286


title: TRN677

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_A2_S287


title: OTTA2014_1128_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: USC


title: OTTA2014_1127_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1126_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN676

description:
nuclear RNA
TPM.TRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN674

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_A11_S278


title: TRN675

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp7_A12_S277


title: TRN673


title: OTTA2014_1124_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN682


title: TRN672

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_H9_S292


title: OTTA2014_1132_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1121_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1123_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN671

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1130_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1122_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN669


title: TRN670

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_H7_S294


title: OTTA2014_1120_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1119_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN668

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1118_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN667


title: TRN666


title: TRN665


title: OTTA2014_1116_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1117_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN664


title: TRN663


title: OTTA2014_1114_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1115_Clinical

description: single-sample normalized data


title: OTTA2014_1125_Clinical

description: single-sample normalized data


title: OTTA2014_1113_Clinical

description: single-sample normalized data


title: TRN661

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN662


title: OTTA2014_1111_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN659


title: TRN660

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_G9_S304


title: OTTA2014_1110_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1112_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1109_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1108_Clinical

description: single-sample normalized data


title: OTTA2014_1107_Clinical

description: single-sample normalized data


title: TRN654

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN658


title: TRN655

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_G4_S309


title: TRN656


title: OTTA2014_1105_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN657

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_G6_S307


title: OTTA2014_1106_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1103_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN653


title: OTTA2014_1104_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN652

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN651


title: TRN650

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_G11_S302


title: OTTA2014_1102_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1101_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1099_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN648

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_F9_S316


title: TRN647


title: OTTA2014_1098_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN646

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_F7_S318

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN645


title: OTTA2014_1096_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN644


title: OTTA2014_1095_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1094_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN643

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_F4_S321


title: TRN642

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_F3_S322


title: TRN641


title: TRN640


title: OTTA2014_1093_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN649

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1091_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1092_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN638


title: TRN639


title: OTTA2014_1089_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1090_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1100_Clinical

description: single-sample normalized data


title: OTTA2014_1087_Clinical

description: single-sample normalized data


title: TRN637

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1088_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN636

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_E9_S328


title: OTTA2014_1097_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN635

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_E8_S329


title: OTTA2014_1086_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN634

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_E7_S330


title: OTTA2014_1084_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1083_Clinical

description: single-sample normalized data


title: TRN633

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN632

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_E5_S332


title: TRN631

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: TRN630


title: OTTA2014_1081_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN629

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_E2_S335


title: OTTA2014_1080_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN627

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_E12_S325


title: TRN625


title: TRN624

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_D9_S340


title: TRN626

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_E11_S326


title: OTTA2014_1079_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1075_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1077_Clinical

description: single-sample normalized data


title: OTTA2014_1078_Clinical

description: single-sample normalized data


title: TRN623

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_D8_S341

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN621

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_D6_S343


title: TRN620


title: TRN622


title: OTTA2014_1085_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1074_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1073_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1071_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1072_Clinical

description: single-sample normalized data


title: TRN619

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_D4_S345

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1082_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1070_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: omentum


title: OTTA2014_1069_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN618

value: sNuc-seq


title: OTTA2014_1068_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN617

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_D2_S347

tag: sample type

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: TRN628

value: Violet+


title: TRN616

value: TRN no Neun selection


title: OTTA2014_1067_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1066_Clinical

description: single-sample normalized data

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1076_Clinical

description: single-sample normalized data

value: unknown

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1065_Clinical

description: single-sample normalized data

value: dead

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN615

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_D12_S337

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN614

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_D11_S338


title: TRN613

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_D10_S339


title: OTTA2014_1063_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: adnexal


title: TRN612


title: OTTA2014_1062_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: VAN


title: TRN610

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_C7_S354


title: TRN609


title: OTTA2014_1059_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: DOV


title: OTTA2014_1060_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN608

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_C5_S356

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1061_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1058_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN607

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_C4_S357


title: TRN606

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_C3_S358


title: TRN604

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_C1_S360


title: OTTA2014_1057_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN601

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_C10_S351


title: OTTA2014_1055_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1056_Clinical

description: single-sample normalized data


title: OTTA2014_1054_Clinical

description: single-sample normalized data


title: OTTA2014_1052_Clinical

description: single-sample normalized data


title: TRN603

description:
nuclear RNA
TPM.TRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1064_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN602


title: OTTA2014_1051_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN611


title: OTTA2014_1050_Clinical

description: single-sample normalized data

value: low

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1049_Clinical

description: single-sample normalized data

value: white

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN599

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN600

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_B9_S364


title: TRN598

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_B7_S366


title: OTTA2014_1048_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN596


title: OTTA2014_1047_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1046_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1044_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1045_Clinical

description: single-sample normalized data


title: TRN593

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_B2_S371

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN605

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_C2_S359


title: OTTA2014_1042_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1053_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: other


title: H2228_H1975_A549_H838_HCC827_Mixture_10X_10percent_sample

city: Parkville

first: Matthew

last: Ritchie

state: Victoria

address: 1G Royal Parade

department: Epigenetics and Development Division

country: Australia

institute: The Walter and Eliza Hall Institute of Medical Research

data_processing:
Basecalling for the Illumina short-read data was performed using RTA 1.18.66.3 and fastq files were generated using Cell Ranger (1.3). Fastq files for the PromethION long-read data were generated by Guppy (3.1.5).
Illumina short reads were aligned to the mouse genome using Rsubread (1.29.6). Long reads were aligned using minimap2 (2.17) with default parameters.
Short read data were analysed using scPipe (1.4.0) to generate a gene count matrix. Nanopore long-read data were analysed by FLAMES (0.1.0) to generate an isoform count matrix along with isoform annotation.
Genome_build: GRCh38 patch 10
Supplementary_files_format_and_content: Lib10.csv: 5001 most abundant cell barcodes with cell ids, barcode sequence and counts for the Lib10 sample
Supplementary_files_format_and_content: gene_count_Lib10.csv: Count matrix with samples along the columns and genes along the rows for the Lib10 sample
Supplementary_files_format_and_content: isoform_annotated.filtered.gff3: Isoform annotation derived from long-read data (Lib10 sample)
Supplementary_files_format_and_content: transcript_count.csv: Transcript counts from long-read data (Lib10 sample)

molecule: polyA RNA

source_name: lung adenocarcinoma

growth_protocol: The human lung adenocarcinoma cell lines H2228, H1975, A549, H838 and HCC827 were retrieved from ATCC (https://www.atcc.org/) and cultured in Roswell Park Memorial Institute (RPMI) 1640 medium with 10% fetal calf serum (FCS) and 1% Penicillin-Streptomycin.  The cells were grown independently at 37C  with 5% carbon dioxide until near 100% confluency.

extract_protocol:
The cells were counted using Chamber Slide and roughly 2 million cells from each cell line were mixed and processed by 10X. Three CEL-seq2 plates were sorted for the same sample.
Cell isolation and library construction was performed using a Chromium 10X v2 protocol that was adapted to accommodate both Illumina and Nanopore sequencing. The 90% sample was sequenced by Illumina short-read sequencing only and is available in GEO under accession number GSE126906 (sample GSM3618014). The 10% sample was sequenced by both Illumina short-read and Oxford Nanopore Technologies long-read sequencing according to the protocol at dx.doi.org/10.17504/protocols.io.8d9hs96.

tag: barcode coordinate

value: bases 1 to 16 on R1

tag: umi coordinate

value: bases 17 to 26 on R1


title: TRN592


title: TRN591


title: OTTA2014_1039_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

tag: study entry delay

tag: anatomical site


title: OTTA2014_1040_Clinical

description: single-sample normalized data

value: alive

tag: experiment site

tag: site id


title: OTTA2014_1041_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity


title: OTTA2014_1038_Clinical

description: single-sample normalized data

tag: sample region necrosis

tag: age at diagnosis


title: TRN597

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_B6_S367

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN590

value: No


title: TRN589

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_B10_S363

value: Violet+


title: OTTA2014_1036_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1037_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN595

value: TRN no Neun selection


title: TRN594


title: OTTA2014_1033_Clinical

description: single-sample normalized data

value: HGSOC

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1035_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: high


title: TRN587

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_A8_S377

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1034_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN586


title: OTTA2014_1032_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1030_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

tag: site id


title: OTTA2014_1043_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: VAN


title: OTTA2014_1031_Clinical

description: single-sample normalized data

value: DOV


title: OTTA2014_1029_Clinical

description: single-sample normalized data

value: hispanic


title: TRN585

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1028_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: white


title: OTTA2014_1027_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1026_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN584

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_A5_S380


title: OTTA2014_1025_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1024_Clinical

description: single-sample normalized data


title: TRN583

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_A4_S381

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN588


title: OTTA2014_1023_Clinical

description: single-sample normalized data

tag: Stage

value: low

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN582

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_A3_S382


title: OTTA2014_1022_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN581

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_A2_S383


title: OTTA2014_1020_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1021_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1019_Clinical

description: single-sample normalized data


title: OTTA2014_1017_Clinical

description: single-sample normalized data


title: TRN579

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp6_A12_S373

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1018_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN578


title: OTTA2014_1016_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN576

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_H9_S381

value: TRN adjacent


title: OTTA2014_1013_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN580


title: TRN577


title: TRN575

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_H8_S380


title: OTTA2014_1010_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1009_Clinical

description: single-sample normalized data


title: OTTA2014_1012_Clinical

description: single-sample normalized data


title: OTTA2014_1011_Clinical

description: single-sample normalized data


title: OTTA2014_1008_Clinical

description: single-sample normalized data


title: OTTA2014_1006_Clinical

description: single-sample normalized data


title: OTTA2014_1007_Clinical

description: single-sample normalized data


title: OTTA2014_1005_Clinical

description: single-sample normalized data


title: OTTA2014_1015_Clinical

description: single-sample normalized data


title: TRN572

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_H5_S377

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1014_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1003_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1002_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN571

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_H4_S376


title: OTTA2014_1001_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0999_Clinical

description: single-sample normalized data


title: OTTA2014_1000_Clinical

description: single-sample normalized data


title: OTTA2014_0997_Clinical

description: single-sample normalized data


title: TRN570

description:
nuclear RNA
TPM.TRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0998_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN569


title: TRN573

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_H6_S378


title: TRN574

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_H7_S379


title: OTTA2014_0993_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN567


title: TRN568


title: OTTA2014_1004_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN565

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_H10_S382


title: OTTA2014_0995_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0990_Clinical

description: single-sample normalized data


title: OTTA2014_0994_Clinical

description: single-sample normalized data


title: OTTA2014_0996_Clinical

description: single-sample normalized data


title: OTTA2014_0988_Clinical

description: single-sample normalized data


title: OTTA2014_0987_Clinical

description: single-sample normalized data


title: OTTA2014_0986_Clinical

description: single-sample normalized data


title: OTTA2014_0992_Clinical

description: single-sample normalized data


title: OTTA2014_0985_Clinical

description: single-sample normalized data


title: OTTA2014_0991_Clinical

description: single-sample normalized data

value: omentum


title: TRN563

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_G8_S368

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0984_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN564

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_G9_S369


title: TRN562

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_G7_S367


title: OTTA2014_0982_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: alive

tag: overall survival time

tag: progression-free survival time

value: USC


title: OTTA2014_0983_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN566

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_H11_S383

value: sNuc-seq

value: No


title: OTTA2014_0981_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0980_Clinical

description: single-sample normalized data


title: OTTA2014_0989_Clinical

description: single-sample normalized data


title: TRN561

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+

tag: plate type


title: TRN560


title: OTTA2014_0978_Clinical

description: single-sample normalized data

value: HGSOC

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN559

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_G4_S364


title: TRN558


title: OTTA2014_0977_Clinical

description: single-sample normalized data

value: high

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN557

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_G2_S362


title: OTTA2014_0976_Clinical

description: single-sample normalized data

value: unknown

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0974_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0975_Clinical

description: single-sample normalized data


title: TRN556

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN554


title: OTTA2014_0973_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: dead


title: OTTA2014_0970_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: adnexal


title: OTTA2014_0966_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

value: VAN

tag: site id


title: OTTA2014_0971_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: DOV


title: OTTA2014_0972_Clinical

description: single-sample normalized data


title: OTTA2014_0968_Clinical

description: single-sample normalized data


title: OTTA2014_0969_Clinical

description: single-sample normalized data


title: OTTA2014_0979_Clinical

description: single-sample normalized data


title: OTTA2014_0964_Clinical

description: single-sample normalized data


title: TRN553

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_G10_S370

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0965_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0963_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0961_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN552

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_F9_S357


title: OTTA2014_0962_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0960_Clinical

description: single-sample normalized data


title: OTTA2014_0959_Clinical

description: single-sample normalized data


title: TRN551

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN550

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_F7_S355


title: TRN549


title: TRN555


title: OTTA2014_0967_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0958_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN548

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_F5_S353


title: OTTA2014_0956_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0957_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0955_Clinical

description: single-sample normalized data


title: TRN547

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN546


title: OTTA2014_0953_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN545

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_F2_S350


title: OTTA2014_0954_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0949_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN544

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_F1_S349


title: OTTA2014_0951_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0952_Clinical

description: single-sample normalized data


title: OTTA2014_0946_Clinical

description: single-sample normalized data


title: OTTA2014_0945_Clinical

description: single-sample normalized data


title: OTTA2014_0944_Clinical

description: single-sample normalized data


title: TRN543

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_F12_S360

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0947_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0943_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0942_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN542

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_F11_S359


title: TRN541

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_F10_S358


title: TRN540

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_E9_S345


title: OTTA2014_0950_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0939_Clinical

description: single-sample normalized data


title: OTTA2014_0940_Clinical

description: single-sample normalized data


title: OTTA2014_0941_Clinical

description: single-sample normalized data


title: OTTA2014_0948_Clinical

description: single-sample normalized data


title: OTTA2014_0938_Clinical

description: single-sample normalized data


title: OTTA2014_0937_Clinical

description: single-sample normalized data


title: OTTA2014_0936_Clinical

description: single-sample normalized data


title: OTTA2014_0933_Clinical

description: single-sample normalized data


title: OTTA2014_0935_Clinical

description: single-sample normalized data


title: TRN539

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_E8_S344

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN538

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: TRN537

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_E6_S342


title: OTTA2014_0931_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0932_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0930_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN536

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_E5_S341


title: TRN535

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_E4_S340


title: OTTA2014_0929_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN534

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_E3_S339

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0927_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0928_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0925_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0924_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN533

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_E2_S338

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0923_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: hispanic


title: OTTA2014_0922_Clinical

description: single-sample normalized data

value: white

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0934_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN532

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_E1_S337


title: TRN531

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_E12_S348


title: TRN530

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_E11_S347


title: OTTA2014_0917_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: low


title: TRN528

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_D9_S333

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type

value: TRN adjacent


title: OTTA2014_0921_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0920_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0919_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0918_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0926_Clinical

description: single-sample normalized data


title: TRN527

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_D8_S332

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN529

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_E10_S346


title: TRN526

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_D7_S331


title: OTTA2014_0916_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN525

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_D6_S330


title: TRN524

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_D5_S329


title: OTTA2014_0914_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0911_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0915_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0913_Clinical

description: single-sample normalized data


title: OTTA2014_0912_Clinical

description: single-sample normalized data


title: OTTA2014_0910_Clinical

description: single-sample normalized data


title: OTTA2014_0905_Clinical

description: single-sample normalized data


title: OTTA2014_0906_Clinical

description: single-sample normalized data


title: OTTA2014_0908_Clinical

description: single-sample normalized data


title: OTTA2014_0907_Clinical

description: single-sample normalized data


title: OTTA2014_0909_Clinical

description: single-sample normalized data


title: OTTA2014_0904_Clinical

description: single-sample normalized data


title: TRN523

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_D4_S328

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0903_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0902_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0901_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN522


title: TRN520

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_D1_S325


title: TRN521

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_D2_S326


title: OTTA2014_0900_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0898_Clinical

description: single-sample normalized data

value: peritoneal


title: OTTA2014_0899_Clinical

description: single-sample normalized data


title: TRN519

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_D12_S336

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN518

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_D11_S335


title: TRN517

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_D10_S334


title: OTTA2014_0897_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: alive


title: OTTA2014_0893_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0896_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0892_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0891_Clinical

description: single-sample normalized data


title: OTTA2014_0894_Clinical

description: single-sample normalized data


title: TRN515

description:
nuclear RNA
TPM.TRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN516

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_C9_S321


title: TRN514


title: OTTA2014_0884_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0887_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0888_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0883_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN513

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_C6_S318

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0885_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0886_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0882_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN512


title: OTTA2014_0895_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN511

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0881_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0880_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0890_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0879_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN510

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0878_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0877_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0876_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0889_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN507

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_C12_S324

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN508


title: TRN506

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_C11_S323


title: TRN509


title: TRN505

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_C10_S322


title: OTTA2014_0866_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0867_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN503


title: OTTA2014_0863_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0873_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0874_Clinical

description: single-sample normalized data


title: OTTA2014_0865_Clinical

description: single-sample normalized data


title: OTTA2014_0864_Clinical

description: single-sample normalized data


title: TRN502

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0871_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0870_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0872_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0862_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0861_Clinical

description: single-sample normalized data


title: OTTA2014_0860_Clinical

description: single-sample normalized data


title: TRN501

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN500


title: OTTA2014_0857_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0875_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0858_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0868_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN504

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0869_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN498


title: OTTA2014_0856_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0854_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0853_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN497

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN495


title: OTTA2014_0851_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0852_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN496


title: TRN494


title: OTTA2014_0849_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0850_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN493

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0848_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0843_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN499


title: OTTA2014_0845_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0846_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0841_Clinical

description: single-sample normalized data


title: TRN492

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0844_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0847_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0842_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN491


title: OTTA2014_0855_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN490

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN489


title: OTTA2014_0840_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0838_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0839_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id