title: OTTA2014_1708_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1710_Clinical

status: Public on Jul 22 2020

type: RNA

city: Vancouver

first: Michael

middle: S

last: Anglesio

state: BC

department: Obstetrics and Gynecology

country: Canada

institute: University of British Columbia

description: single-sample normalized data

hyb_protocol: NanoString Gene Expression protocol using 500ng of Total RNA as measured by NanoDrop spectrophotmeter. RNA is combined with capture and reporter codesets, and hybridization buffer. Reaction mixtures are hybridized in a thermal cycler at 65C for either short (16H) or long (20H) hybridization. Samples are then washed and fixed to cartridges using the nCounter Prep Station (high-sensitivity mode) for imaging.

scan_protocol: imaging on nCounter Digital Analyzer at maximum FOV

data_processing: Samples data is processed and normalized following protocols described in Talhouk et al (PMID: 27096160) using PrOTYPE. Briefly: Count data is Log2 transformed, the mean of housekeeping genes (ACTB, RPL19, SDHA, POLR1B, and PGK1) subtracted on a per-sample basis, and then normalized relative to reference samples (denoted as Pool1, Pool2, and Pool3). Code available at https://github.com/AlineTalhouk/PrOType

molecule: total RNA

organism: Homo sapiens

source_name: primary high-grade serous tubo-ovarian carcinoma

label_protocol: NanoString probe-specific unique barcode

extract_protocol: Total RNA extracted with the Qiagen miRNeasy FFPE kit (modified protocol)

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

tag: Stage

value: high

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

value: all wildtypes

tag: race/ethnicity

value: white

value: dead

tag: study entry delay

tag: anatomical site

value: presumed adnexal

tag: experiment site

value: USC

tag: site id

value: SEA


title: OTTA2014_1707_Clinical

description: single-sample normalized data

value: alive


title: TRN1256

type: SRA

city: Cambridge

first: Joshua

last: Levin

state: MA

address: 75 Ames St

department: Stanley Center

country: USA

institute: Broad Institute

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_A5_S101

library_source: transcriptomic

data_processing:
RSEM v1.2.87 was run on raw fastq fileswith default parameters on alignments created by Bowtie on UCSC gene annotation
TPM estimates were tranformed to log space by taking log TPM +1
TopHat2 v2.0.10 was used to map fastq files to mm10 reference
RNASeq-QC was run on the TopHat2 bamfiles to get QC metrics
For TRN and patch-seq samples, cells were removed if they had less than 40% genome mapping rate or or less than 1500 detected genes
Clustering and DE analysis of TRN samples was perfomed with biSNE software (https://github.com/yinqingl/nucseq_analysis), including normalizing the log TPM data to a normalized log TPM
For non-TRN samples, nuclei expressing <1500 genes were removed
Seurat v2.2.0 was used for clustering of the non-TRN samples
Genome_build: mm10
Supplementary_files_format_and_content: Formatted expression matrix (tab deliminated text file) with cells as columns, genes as rows, and TPM values as entries

organism: Mus musculus

source_name: TRN

extract_protocol:
Sucrose gradient nuclei isolation followed by FACS sorting for Violet+, Violet+ GFP+ or Violet+ NeuN+ nuclei
Modified SMARTseq2 single nuclei RNA-Seq

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+

tag: plate type

value: TRN no Neun selection


title: OTTA2014_1706_Clinical

description: single-sample normalized data

value: low

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1255

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_A4_S100


title: OTTA2014_1705_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1704_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1252

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_A1_S97


title: OTTA2014_1703_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1702_Clinical

description: single-sample normalized data


title: TRN1251

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_A12_S108

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1249

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_A10_S106


title: OTTA2014_1709_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1248

description:
nuclear RNA
TPM.TRN.tsv
trn_10_H9_S189


title: TRN1246

description:
nuclear RNA
TPM.TRN.tsv
trn_10_H7_S187


title: TRN1247

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: TRN1245


title: OTTA2014_1700_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1244

description:
nuclear RNA
TPM.TRN.tsv
trn_10_H5_S185


title: OTTA2014_1695_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1254

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_A3_S99


title: OTTA2014_1697_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1243

description:
nuclear RNA
TPM.TRN.tsv
trn_10_H4_S184

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1242

description:
nuclear RNA
TPM.TRN.tsv
trn_10_H3_S183


title: TRN1253

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_A2_S98


title: OTTA2014_1696_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1241


title: OTTA2014_1694_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1693_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1240

description:
nuclear RNA
TPM.TRN.tsv
trn_10_H1_S181


title: OTTA2014_1692_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1239

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1691_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1250

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_A11_S107


title: OTTA2014_1690_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: hispanic


title: OTTA2014_1701_Clinical

description: single-sample normalized data

value: HGSOC

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1698_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1238

description:
nuclear RNA
TPM.TRN.tsv
trn_10_H11_S191

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1688_Clinical

description: single-sample normalized data

value: high

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1689_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: unknown


title: TRN1237


title: TRN1235

description:
nuclear RNA
TPM.TRN.tsv
trn_10_G8_S176


title: TRN1236

description:
nuclear RNA
TPM.TRN.tsv
trn_10_G9_S177


title: TRN1233

description:
nuclear RNA
TPM.TRN.tsv
trn_10_G6_S174


title: OTTA2014_1687_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes

tag: race/ethnicity


title: OTTA2014_1685_Clinical

description: single-sample normalized data

value: pathogenic BRCA2 mutation

value: white

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1686_Clinical

description: single-sample normalized data

value: dead

value: presumed adnexal


title: OTTA2014_1699_Clinical

description: single-sample normalized data

value: USC

value: SEA


title: OTTA2014_1684_Clinical

description: single-sample normalized data

value: alive


title: OTTA2014_1683_Clinical

description: single-sample normalized data


title: OTTA2014_1682_Clinical

description: single-sample normalized data


title: OTTA2014_1681_Clinical

description: single-sample normalized data


title: OTTA2014_1679_Clinical

description: single-sample normalized data


title: TRN1229

description:
nuclear RNA
TPM.TRN.tsv
trn_10_G2_S170

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: TRN1231

description:
nuclear RNA
TPM.TRN.tsv
trn_10_G4_S172

value: Violet+

value: TRN no Neun selection


title: TRN1232


title: TRN1230

description:
nuclear RNA
TPM.TRN.tsv
trn_10_G3_S171


title: TRN1227


title: TRN1226


title: OTTA2014_1678_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1675_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: low


title: OTTA2014_1676_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1224

description:
nuclear RNA
TPM.TRN.tsv
trn_10_F9_S165


title: TRN1225

description:
nuclear RNA
TPM.TRN.tsv
trn_10_G10_S178


title: TRN1223


title: TRN1234

description:
nuclear RNA
TPM.TRN.tsv
trn_10_G7_S175


title: OTTA2014_1674_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1673_Clinical

description: single-sample normalized data


title: TRN1222

description:
nuclear RNA
TPM.TRN.tsv
trn_10_F7_S163

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1220

description:
nuclear RNA
TPM.TRN.tsv
trn_10_F5_S161


title: TRN1219

description:
nuclear RNA
TPM.TRN.tsv
trn_10_F4_S160


title: TRN1221

description:
nuclear RNA
TPM.TRN.tsv
trn_10_F6_S162


title: TRN1228

description:
nuclear RNA
TPM.TRN.tsv
trn_10_G1_S169


title: OTTA2014_1671_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1670_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1672_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1669_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1680_Clinical

description: single-sample normalized data


title: TRN1218

description:
nuclear RNA
TPM.TRN.tsv
trn_10_F3_S159

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1216

description:
nuclear RNA
TPM.TRN.tsv
trn_10_F1_S157


title: TRN1215


title: OTTA2014_1677_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1667_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1666_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1668_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1217

description:
nuclear RNA
TPM.TRN.tsv
trn_10_F2_S158

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1214

description:
nuclear RNA
TPM.TRN.tsv
trn_10_F11_S167


title: OTTA2014_1664_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1663_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1213

description:
nuclear RNA
TPM.TRN.tsv
trn_10_F10_S166


title: TRN1211

description:
nuclear RNA
TPM.TRN.tsv
trn_10_E8_S152


title: OTTA2014_1661_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1209


title: OTTA2014_1662_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1660_Clinical

description: single-sample normalized data


title: TRN1210

description:
nuclear RNA
TPM.TRN.tsv
trn_10_E7_S151

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1659_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1207

description:
nuclear RNA
TPM.TRN.tsv
trn_10_E4_S148


title: OTTA2014_1658_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1208

description:
nuclear RNA
TPM.TRN.tsv
trn_10_E5_S149


title: TRN1205


title: OTTA2014_1665_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1204

description:
nuclear RNA
TPM.TRN.tsv
trn_10_E1_S145


title: OTTA2014_1656_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1206

description:
nuclear RNA
TPM.TRN.tsv
trn_10_E3_S147

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1654_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1203

description:
nuclear RNA
TPM.TRN.tsv
trn_10_E12_S156


title: TRN1212

description:
nuclear RNA
TPM.TRN.tsv
trn_10_E9_S153


title: TRN1201

description:
nuclear RNA
TPM.TRN.tsv
trn_10_E10_S154


title: TRN1200

description:
nuclear RNA
TPM.TRN.tsv
trn_10_D9_S141


title: TRN1199

description:
nuclear RNA
TPM.TRN.tsv
trn_10_D8_S140


title: TRN1202

description:
nuclear RNA
TPM.TRN.tsv
trn_10_E11_S155


title: OTTA2014_1653_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1651_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1652_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1198

description:
nuclear RNA
TPM.TRN.tsv
trn_10_D7_S139

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1650_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1648_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1649_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1197

description:
nuclear RNA
TPM.TRN.tsv
trn_10_D6_S138


title: TRN1196

description:
nuclear RNA
TPM.TRN.tsv
trn_10_D5_S137


title: OTTA2014_1647_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1646_Clinical

description: single-sample normalized data


title: OTTA2014_1657_Clinical

description: single-sample normalized data


title: OTTA2014_1655_Clinical

description: single-sample normalized data


title: OTTA2014_1645_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation

value: hispanic


title: TRN1194

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1192


title: TRN1191

description:
nuclear RNA
TPM.TRN.tsv
trn_10_D12_S144


title: OTTA2014_1644_Clinical

description: single-sample normalized data

value: HGSOC

value: high

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1642_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: unknown

value: all wildtypes


title: OTTA2014_1643_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: white


title: TRN1188

description:
nuclear RNA
TPM.TRN.tsv
trn_10_C9_S129


title: TRN1190


title: TRN1187


title: TRN1189

description:
nuclear RNA
TPM.TRN.tsv
trn_10_D10_S142


title: OTTA2014_1641_Clinical

description: single-sample normalized data

value: dead

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1640_Clinical

description: single-sample normalized data

value: presumed adnexal


title: TRN1186

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1185

description:
nuclear RNA
TPM.TRN.tsv
trn_10_C6_S126


title: OTTA2014_1639_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: USC


title: TRN1195

description:
nuclear RNA
TPM.TRN.tsv
trn_10_D4_S136


title: OTTA2014_1638_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: SEA


title: OTTA2014_1636_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: alive


title: TRN1184

description:
nuclear RNA
TPM.TRN.tsv
trn_10_C5_S125

value: sNuc-seq


title: TRN1183

description:
nuclear RNA
TPM.TRN.tsv
trn_10_C4_S124

value: No


title: OTTA2014_1635_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1634_Clinical

description: single-sample normalized data

value: pathogenic BRCA2 mutation


title: TRN1181

description:
nuclear RNA
TPM.TRN.tsv
trn_10_C2_S122

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+

tag: plate type

value: TRN no Neun selection


title: OTTA2014_1632_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: VAN

value: RTR


title: TRN1193

description:
nuclear RNA
TPM.TRN.tsv
trn_10_D2_S134


title: TRN1180


title: OTTA2014_1631_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1630_Clinical

description: single-sample normalized data

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1179


title: TRN1177

description:
nuclear RNA
TPM.TRN.tsv
trn_10_C10_S130


title: TRN1178

description:
nuclear RNA
TPM.TRN.tsv
trn_10_C11_S131


title: OTTA2014_1637_Clinical

description: single-sample normalized data

value: unknown

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1182

description:
nuclear RNA
TPM.TRN.tsv
trn_10_C3_S123

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1629_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1176

description:
nuclear RNA
TPM.TRN.tsv
trn_10_B9_S117


title: TRN1175

description:
nuclear RNA
TPM.TRN.tsv
trn_10_B8_S116


title: TRN1174

description:
nuclear RNA
TPM.TRN.tsv
trn_10_B7_S115


title: OTTA2014_1628_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1625_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1173

description:
nuclear RNA
TPM.TRN.tsv
trn_10_B6_S114


title: OTTA2014_1626_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1627_Clinical

description: single-sample normalized data

value: low


title: TRN1172

description:
nuclear RNA
TPM.TRN.tsv
trn_10_B5_S113

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1171

description:
nuclear RNA
TPM.TRN.tsv
trn_10_B4_S112


title: OTTA2014_1622_Clinical

description: single-sample normalized data

value: white

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1633_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: all wildtypes


title: OTTA2014_1620_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: dead

value: presumed adnexal


title: TRN1168

description:
nuclear RNA
TPM.TRN.tsv
trn_10_B1_S109


title: OTTA2014_1624_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1623_Clinical

description: single-sample normalized data


title: OTTA2014_1618_Clinical

description: single-sample normalized data


title: TRN1170

description:
nuclear RNA
TPM.TRN.tsv
trn_10_B3_S111

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1169

description:
nuclear RNA
TPM.TRN.tsv
trn_10_B2_S110


title: TRN1167

description:
nuclear RNA
TPM.TRN.tsv
trn_10_B12_S120


title: TRN1166

description:
nuclear RNA
TPM.TRN.tsv
trn_10_B11_S119


title: OTTA2014_1619_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1621_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1614_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1164


title: OTTA2014_1615_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1611_Clinical

description: single-sample normalized data


title: OTTA2014_1617_Clinical

description: single-sample normalized data


title: OTTA2014_1616_Clinical

description: single-sample normalized data


title: OTTA2014_1609_Clinical

description: single-sample normalized data

value: AOC


title: TRN1165

description:
nuclear RNA
TPM.TRN.tsv
trn_10_B10_S118

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1158

description:
nuclear RNA
TPM.TRN.tsv
trn_10_A3_S99


title: TRN1162

description:
nuclear RNA
TPM.TRN.tsv
trn_10_A7_S103


title: TRN1160


title: TRN1159


title: TRN1163

description:
nuclear RNA
TPM.TRN.tsv
trn_10_A8_S104


title: OTTA2014_1608_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1613_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1612_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1610_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1157

description:
nuclear RNA
TPM.TRN.tsv
trn_10_A2_S98

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1155


title: TRN1156


title: OTTA2014_1606_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: alive

tag: overall survival time

tag: progression-free survival time


title: TRN1154

description:
nuclear RNA
TPM.TRN.tsv
trn_10_A11_S107

value: sNuc-seq


title: OTTA2014_1607_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1153

description:
nuclear RNA
TPM.TRN.tsv
trn_10_A10_S106

value: No


title: OTTA2014_1603_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1161

description:
nuclear RNA
TPM.TRN.tsv
trn_10_A6_S102


title: OTTA2014_1604_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1605_Clinical

description: single-sample normalized data


title: TRN1152

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_H9_S93

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type

value: TRN adjacent


title: OTTA2014_1602_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1151

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_H8_S92

value: Violet+


title: OTTA2014_1601_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1148

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_H5_S89


title: OTTA2014_1600_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1147

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_H4_S88


title: TRN1150

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_H7_S91


title: OTTA2014_1599_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1598_Clinical

description: single-sample normalized data


title: OTTA2014_1597_Clinical

description: single-sample normalized data


title: TRN1145

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_H2_S86

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1596_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1144


title: OTTA2014_1595_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1146

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_H3_S87


title: OTTA2014_1593_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1594_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1592_Clinical

description: single-sample normalized data


title: TRN1142

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_H11_S95

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1143


title: TRN1141

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_H10_S94


title: OTTA2014_1590_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1591_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1138

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_G7_S79


title: TRN1139

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_G8_S80


title: OTTA2014_1588_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1589_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1149

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_H6_S90

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1137

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_G6_S78


title: OTTA2014_1587_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1136

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_G5_S77


title: TRN1135

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_G4_S76


title: TRN1134

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_G3_S75


title: OTTA2014_1585_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1586_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1584_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1132

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_G1_S73

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1583_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1131


title: TRN1140

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_G9_S81


title: TRN1129


title: OTTA2014_1582_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1127

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_F8_S68


title: TRN1128

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_F9_S69


title: OTTA2014_1580_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1126

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_F7_S67


title: OTTA2014_1576_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1578_Clinical

description: single-sample normalized data


title: OTTA2014_1579_Clinical

description: single-sample normalized data


title: OTTA2014_1577_Clinical

description: single-sample normalized data


title: TRN1125

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_F6_S66

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1124

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_F5_S65


title: TRN1123

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_F4_S64


title: OTTA2014_1575_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1122

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_F3_S63


title: OTTA2014_1574_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1573_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1121

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_F2_S62


title: OTTA2014_1572_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1133

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_G2_S74

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1120

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_F1_S61


title: TRN1130

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_G11_S83


title: OTTA2014_1581_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1570_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1569_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1118


title: OTTA2014_1567_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1115

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_E8_S56

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1566_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1116

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_E9_S57


title: TRN1113


title: TRN1114

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_E7_S55


title: TRN1111

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_E4_S52


title: OTTA2014_1565_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1564_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1563_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1562_Clinical

description: single-sample normalized data


title: TRN1112

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_E5_S53

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1560_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1109

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_E2_S50


title: TRN1110


title: OTTA2014_1561_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1119

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_F12_S72


title: OTTA2014_1559_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1571_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1107

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_E12_S60

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1108


title: OTTA2014_1558_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1557_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1568_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1106

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_E11_S59


title: TRN1105

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_E10_S58


title: OTTA2014_1556_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1555_Clinical

description: single-sample normalized data


title: TRN1117

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1104


title: TRN1103

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_D8_S44


title: TRN1102


title: TRN1101

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_D6_S42


title: OTTA2014_1553_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1552_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1099

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_D4_S40


title: TRN1100


title: OTTA2014_1551_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1550_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

value: USC

tag: site id


title: TRN1097

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_D2_S38

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1554_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1548_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1549_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1095


title: TRN1096


title: OTTA2014_1546_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1094

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_D11_S47

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1093

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_D10_S46


title: TRN1092

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_C9_S33


title: OTTA2014_1544_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1543_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1542_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: omentum


title: TRN1091

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_C8_S32


title: OTTA2014_1541_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1090

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_C7_S31

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1089

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_C6_S30


title: OTTA2014_1540_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1098

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_D3_S39


title: OTTA2014_1538_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: adnexal


title: TRN1087


title: OTTA2014_1539_Clinical

description: single-sample normalized data

value: HGSOC

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1086

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_C3_S27


title: TRN1085

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_C2_S26


title: OTTA2014_1536_Clinical

description: single-sample normalized data

value: high

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1545_Clinical

description: single-sample normalized data

value: unknown


title: OTTA2014_1535_Clinical

description: single-sample normalized data


title: OTTA2014_1534_Clinical

description: single-sample normalized data


title: TRN1082

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1533_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1081

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_C10_S34


title: OTTA2014_1532_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1531_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1080

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_B9_S21


title: TRN1079

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_B8_S20


title: OTTA2014_1530_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1088

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1078


title: OTTA2014_1527_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1077

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_B6_S18


title: TRN1076

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_B5_S17


title: OTTA2014_1528_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1074

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_B3_S15


title: OTTA2014_1526_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1075

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_B4_S16


title: TRN1083

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_C12_S36


title: OTTA2014_1537_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1525_Clinical

description: single-sample normalized data

value: low


title: OTTA2014_1524_Clinical

description: single-sample normalized data


title: TRN1084

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1073

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_B2_S14


title: TRN1072


title: OTTA2014_1523_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1071

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_B12_S24


title: TRN1070

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_B11_S23


title: OTTA2014_1521_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1069

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_B10_S22


title: OTTA2014_1529_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1547_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1520_Clinical

description: single-sample normalized data


title: OTTA2014_1519_Clinical

description: single-sample normalized data


title: TRN1068

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_A9_S9

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1518_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1067

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_A8_S8


title: TRN1066

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_A7_S7


title: TRN1065

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_A6_S6


title: TRN1064

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_A5_S5


title: OTTA2014_1514_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1516_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1063

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_A4_S4


title: TRN1061

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_A2_S2


title: OTTA2014_1522_Clinical

description: single-sample normalized data

value: white

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1512_Clinical

description: single-sample normalized data


title: OTTA2014_1511_Clinical

description: single-sample normalized data


title: TRN1060

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1059

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_A12_S12


title: TRN1058


title: TRN1062

description:
nuclear RNA
TPM.TRN.tsv
gpe_25_A3_S3


title: TRN1056

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_H9_S285


title: OTTA2014_1513_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1508_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1055

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_H8_S284


title: TRN1054

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_H7_S283


title: OTTA2014_1517_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1510_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1057

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1507_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1506_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1053


title: OTTA2014_1505_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes

tag: race/ethnicity

value: POC


title: OTTA2014_1504_Clinical

description: single-sample normalized data

value: dead

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1503_Clinical

description: single-sample normalized data


title: OTTA2014_1515_Clinical

description: single-sample normalized data


title: TRN1052

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_H5_S281

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1509_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1049


title: TRN1050

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_H3_S279


title: OTTA2014_1501_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1502_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1048


title: OTTA2014_1499_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1500_Clinical

description: single-sample normalized data


title: TRN1047

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1046

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_H11_S287


title: OTTA2014_1497_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1044

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_G9_S273


title: OTTA2014_1496_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1045

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_H10_S286


title: OTTA2014_1495_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1042


title: OTTA2014_1494_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1041

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1043

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_G8_S272


title: TRN1040

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_G5_S269


title: OTTA2014_1493_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1491_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1489_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1051

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_H4_S280


title: TRN1038

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_G3_S267


title: OTTA2014_1488_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1490_Clinical

description: single-sample normalized data


title: TRN1037

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_G2_S266

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1036


title: OTTA2014_1498_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1035


title: TRN1034


title: OTTA2014_1487_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1485_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1033

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_G10_S274


title: OTTA2014_1484_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1032

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_F9_S261

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1483_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1039

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_G4_S268


title: TRN1030

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_F7_S259


title: TRN1031

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_F8_S260


title: OTTA2014_1482_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1029

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_F6_S258


title: OTTA2014_1480_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1492_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1027

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_F4_S256

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1028


title: TRN1026


title: OTTA2014_1477_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1478_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1476_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1025

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_F2_S254


title: OTTA2014_1475_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1474_Clinical

description: single-sample normalized data


title: TRN1023

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1486_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1024

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_F1_S253


title: TRN1022

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_F11_S263


title: TRN1021

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_F10_S262


title: OTTA2014_1481_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1020


title: TRN1019

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_E8_S248


title: OTTA2014_1472_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1473_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1479_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation


title: TRN1017

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_E6_S246

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1470_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1016

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_E5_S245


title: OTTA2014_1469_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: alive


title: OTTA2014_1471_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1467_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1015

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_E4_S244

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1468_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1466_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1464_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1463_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1013

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_E2_S242

tag: sample type

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: TRN1014

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_E3_S243

value: TRN adjacent


title: TRN1012

value: Violet+


title: OTTA2014_1465_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: USC


title: TRN1011

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_E12_S252


title: OTTA2014_1461_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN1010

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_E11_S251


title: TRN1009

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_E10_S250


title: OTTA2014_1459_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1460_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1008

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_D9_S237

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1018

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_E7_S247


title: TRN1007

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_D8_S236


title: TRN1005

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_D6_S234


title: OTTA2014_1457_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1456_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1454_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1006

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_D7_S235


title: TRN1003

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_D4_S232


title: OTTA2014_1455_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1004

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_D5_S233

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1453_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1001

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_D2_S230


title: OTTA2014_1462_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1452_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1451_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN999

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_D12_S240

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN998


title: OTTA2014_1450_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1000

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_D1_S229


title: OTTA2014_1449_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN997

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_D10_S238


title: TRN996

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_C9_S225


title: OTTA2014_1448_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1447_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1446_Clinical

description: single-sample normalized data


title: TRN995

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_C8_S224

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN994

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_C7_S223


title: OTTA2014_1445_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1444_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN993

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_C6_S222


title: TRN992

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_C5_S221


title: OTTA2014_1443_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN1002

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_D3_S231


title: TRN991

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_C4_S220


title: TRN990

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_C3_S219


title: OTTA2014_1441_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1442_Clinical

description: single-sample normalized data


title: TRN988

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_C1_S217

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1440_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN987

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_C12_S228


title: OTTA2014_1439_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN989

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_C2_S218


title: TRN984

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_B9_S213


title: TRN985

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_C10_S226


title: OTTA2014_1438_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN983

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_B8_S212


title: OTTA2014_1437_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1433_Clinical

description: single-sample normalized data


title: OTTA2014_1436_Clinical

description: single-sample normalized data


title: TRN982

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_B7_S211

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN981

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_B6_S210


title: OTTA2014_1434_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN986

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_C11_S227


title: OTTA2014_1435_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN980


title: OTTA2014_1432_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1431_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1430_Clinical

description: single-sample normalized data


title: TRN979

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_B4_S208

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN978

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_B3_S207


title: OTTA2014_1429_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1428_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN977

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_B2_S206


title: OTTA2014_1427_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN976

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_B1_S205


title: TRN975

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_B12_S216


title: OTTA2014_1426_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1425_Clinical

description: single-sample normalized data

value: presumed adnexal

value: LAX


title: TRN973

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_B10_S214

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN972


title: TRN974

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_B11_S215


title: OTTA2014_1423_Clinical

description: single-sample normalized data

value: HGSOC

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1424_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: high

value: any


title: TRN970

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_A7_S199


title: OTTA2014_1421_Clinical

description: single-sample normalized data

tag: Stage

value: low

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN969

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_A6_S198


title: TRN967

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_A4_S196


title: TRN968

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_A5_S197


title: TRN966


title: OTTA2014_1418_Clinical

description: single-sample normalized data

value: white

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1420_Clinical

description: single-sample normalized data

value: unknown

value: hispanic


title: OTTA2014_1417_Clinical

description: single-sample normalized data

value: dead


title: TRN965

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_A2_S194

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1419_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1415_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: pathogenic BRCA2 mutation


title: TRN963

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_A12_S204


title: TRN962

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_A11_S203


title: OTTA2014_1414_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes

tag: race/ethnicity


title: OTTA2014_1413_Clinical

description: single-sample normalized data

value: alive

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN964

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: OTTA2014_1412_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN961

value: Violet+

value: TRN no Neun selection


title: TRN971

description:
nuclear RNA
TPM.TRN.tsv
gpe_23_A8_S200

value: TRN adjacent


title: OTTA2014_1422_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: pathogenic BRCA1 mutation

value: presumed adnexal

value: USC

value: LAX


title: TRN959


title: TRN958

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_H7_S6


title: OTTA2014_1411_Clinical

description: single-sample normalized data

value: HGSOC

tag: Stage

value: high

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN956


title: OTTA2014_1410_Clinical

description: single-sample normalized data

value: white

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN955

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1407_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time


title: TRN957

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_H6_S7


title: OTTA2014_1416_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1406_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN954

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_H3_S10


title: TRN953

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_H2_S11


title: TRN952


title: OTTA2014_1402_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1404_Clinical

description: single-sample normalized data


title: OTTA2014_1405_Clinical

description: single-sample normalized data


title: TRN960

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_H9_S4

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN951


title: OTTA2014_1401_Clinical

description: single-sample normalized data

value: hispanic

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN950


title: TRN948

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_G9_S16


title: OTTA2014_1400_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: all wildtypes


title: OTTA2014_1408_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: alive


title: OTTA2014_1399_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1409_Clinical

description: single-sample normalized data


title: TRN947

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_G8_S17

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN946

value: No


title: OTTA2014_1398_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1397_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: unknown

value: GER


title: OTTA2014_1396_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN945

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_G6_S19

value: Violet+

value: TRN no Neun selection


title: OTTA2014_1395_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: presumed adnexal

tag: experiment site

tag: site id


title: OTTA2014_1403_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation

value: USC


title: TRN944

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_G5_S20

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN943

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_G4_S21


title: TRN941

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_G2_S23


title: TRN942

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_G3_S22


title: OTTA2014_1394_Clinical

description: single-sample normalized data

value: HGSOC

value: low

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1393_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: high


title: OTTA2014_1391_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: white


title: OTTA2014_1392_Clinical

description: single-sample normalized data

value: dead

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN940

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_G1_S24

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN939

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: TRN949


title: OTTA2014_1390_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN938


title: TRN937

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_G10_S15


title: OTTA2014_1389_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN936

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_F9_S28


title: TRN935


title: OTTA2014_1386_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: adnexal

value: VAN

value: DOV


title: TRN934

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_F7_S30

value: sNuc-seq


title: OTTA2014_1385_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1384_Clinical

description: single-sample normalized data


title: TRN933

tag: sample type

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: OTTA2014_1383_Clinical

description: single-sample normalized data

value: unknown

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1458_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: POC


title: TRN932

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_F5_S32

value: Violet+


title: OTTA2014_1382_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN931

value: TRN no Neun selection


title: TRN930

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_F3_S34


title: OTTA2014_1381_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1380_Clinical

description: single-sample normalized data


title: TRN927

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN926

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_F11_S26


title: TRN928

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_F1_S36


title: OTTA2014_1379_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1387_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: presumed adnexal

value: GER


title: OTTA2014_1378_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1388_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

value: USC

tag: site id


title: TRN924

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_E9_S40

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN923


title: OTTA2014_1375_Clinical

description: single-sample normalized data

value: HGSOC

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1376_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN922

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_E7_S42


title: TRN920


title: OTTA2014_1374_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1371_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1373_Clinical

description: single-sample normalized data


title: OTTA2014_1372_Clinical

description: single-sample normalized data


title: TRN918

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_E3_S46

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN919


title: TRN917

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_E2_S47


title: OTTA2014_1367_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN916


title: OTTA2014_1368_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1366_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN929

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_F2_S35


title: TRN915


title: OTTA2014_1377_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN921

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_E6_S43

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1365_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN912

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_D9_S52


title: TRN913


title: OTTA2014_1364_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1362_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN910

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_D7_S54


title: TRN911


title: OTTA2014_1370_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1363_Clinical

description: single-sample normalized data


title: TRN909

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_D6_S55

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1361_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1360_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1369_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1359_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN908

description:
nuclear RNA
TPM.TRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN907

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_D4_S57


title: OTTA2014_1358_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN906


title: OTTA2014_1357_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1356_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN925

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_F10_S27


title: TRN914


title: TRN904


title: TRN905


title: TRN903

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_D12_S49


title: OTTA2014_1355_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1353_Clinical

description: single-sample normalized data


title: TRN901

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_D10_S51

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN902


title: OTTA2014_1352_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1354_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN899


title: TRN898


title: OTTA2014_1351_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN897


title: OTTA2014_1350_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1348_Clinical

description: single-sample normalized data


title: OTTA2014_1349_Clinical

description: single-sample normalized data

value: low


title: OTTA2014_1347_Clinical

description: single-sample normalized data

value: high


title: TRN895

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_C4_S69

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1346_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN894

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_C3_S70


title: OTTA2014_1345_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN893


title: OTTA2014_1344_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN891

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_C12_S61


title: OTTA2014_1341_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1342_Clinical

description: single-sample normalized data


title: TRN889

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_C10_S63

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN900


title: OTTA2014_1340_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1339_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN896


title: OTTA2014_1338_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN888

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_B9_S76


title: TRN887


title: TRN886


title: TRN885


title: OTTA2014_1336_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1335_Clinical

description: single-sample normalized data


title: OTTA2014_1337_Clinical

description: single-sample normalized data


title: TRN882

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN892


title: OTTA2014_1333_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1343_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN883

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_B4_S81


title: OTTA2014_1332_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1334_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1330_Clinical

description: single-sample normalized data


title: OTTA2014_1331_Clinical

description: single-sample normalized data


title: TRN890

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN880

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_B1_S84


title: TRN879


title: OTTA2014_1329_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN878

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_B11_S74


title: TRN877

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_B10_S75


title: OTTA2014_1328_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN876


title: OTTA2014_1327_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN884


title: TRN874


title: TRN875


title: TRN881


title: TRN873

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_A6_S91


title: TRN872

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_A5_S92


title: OTTA2014_1325_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1323_Clinical

description: single-sample normalized data


title: TRN871

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN870

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_A3_S94


title: TRN869

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: OTTA2014_1322_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1324_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1320_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1321_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1319_Clinical

description: single-sample normalized data


title: OTTA2014_1318_Clinical

description: single-sample normalized data


title: OTTA2014_1317_Clinical

description: single-sample normalized data


title: OTTA2014_1316_Clinical

description: single-sample normalized data


title: TRN867

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN866

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp9_A11_S86


title: TRN864

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_H9_S100


title: OTTA2014_1315_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1326_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1314_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN863

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_H8_S101


title: OTTA2014_1313_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN862

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1312_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN868


title: OTTA2014_1311_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN859


title: TRN861


title: OTTA2014_1310_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN857

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_H2_S107


title: TRN858

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_H3_S106


title: TRN855


title: TRN856


title: TRN854


title: OTTA2014_1307_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN865

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1306_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1309_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1308_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1305_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1304_Clinical

description: single-sample normalized data


title: TRN853

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_H10_S99

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN851

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_G8_S113


title: TRN852

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_G9_S112


title: OTTA2014_1303_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN850

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_G7_S114


title: OTTA2014_1301_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_1300_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_1302_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1299_Clinical

description: single-sample normalized data


title: TRN860

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_H5_S104

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1298_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1297_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN847

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_G4_S117


title: TRN848

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_G5_S116


title: TRN846


title: OTTA2014_1296_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN845

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_G2_S119


title: TRN844

description:
nuclear RNA
TPM.TRN.tsv
X012116TRNp8_G1_S120