title: OTTA2014_2116_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2118_Clinical

status: Public on Jul 22 2020

type: RNA

city: Vancouver

first: Michael

middle: S

last: Anglesio

state: BC

department: Obstetrics and Gynecology

country: Canada

institute: University of British Columbia

description: single-sample normalized data

hyb_protocol: NanoString Gene Expression protocol using 500ng of Total RNA as measured by NanoDrop spectrophotmeter. RNA is combined with capture and reporter codesets, and hybridization buffer. Reaction mixtures are hybridized in a thermal cycler at 65C for either short (16H) or long (20H) hybridization. Samples are then washed and fixed to cartridges using the nCounter Prep Station (high-sensitivity mode) for imaging.

scan_protocol: imaging on nCounter Digital Analyzer at maximum FOV

data_processing: Samples data is processed and normalized following protocols described in Talhouk et al (PMID: 27096160) using PrOTYPE. Briefly: Count data is Log2 transformed, the mean of housekeeping genes (ACTB, RPL19, SDHA, POLR1B, and PGK1) subtracted on a per-sample basis, and then normalized relative to reference samples (denoted as Pool1, Pool2, and Pool3). Code available at https://github.com/AlineTalhouk/PrOType

molecule: total RNA

organism: Homo sapiens

source_name: primary high-grade serous tubo-ovarian carcinoma

label_protocol: NanoString probe-specific unique barcode

extract_protocol: Total RNA extracted with the Qiagen miRNeasy FFPE kit (modified protocol)

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

value: high

value: unknown

value: pathogenic BRCA1 mutation

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

value: VAN

tag: site id


title: TRN1665

type: SRA

city: Cambridge

first: Joshua

last: Levin

state: MA

address: 75 Ames St

department: Stanley Center

country: USA

institute: Broad Institute

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_C6_S30

library_source: transcriptomic

data_processing:
RSEM v1.2.87 was run on raw fastq fileswith default parameters on alignments created by Bowtie on UCSC gene annotation
TPM estimates were tranformed to log space by taking log TPM +1
TopHat2 v2.0.10 was used to map fastq files to mm10 reference
RNASeq-QC was run on the TopHat2 bamfiles to get QC metrics
For TRN and patch-seq samples, cells were removed if they had less than 40% genome mapping rate or or less than 1500 detected genes
Clustering and DE analysis of TRN samples was perfomed with biSNE software (https://github.com/yinqingl/nucseq_analysis), including normalizing the log TPM data to a normalized log TPM
For non-TRN samples, nuclei expressing <1500 genes were removed
Seurat v2.2.0 was used for clustering of the non-TRN samples
Genome_build: mm10
Supplementary_files_format_and_content: Formatted expression matrix (tab deliminated text file) with cells as columns, genes as rows, and TPM values as entries

organism: Mus musculus

source_name: TRN

extract_protocol:
Sucrose gradient nuclei isolation followed by FACS sorting for Violet+, Violet+ GFP+ or Violet+ NeuN+ nuclei
Modified SMARTseq2 single nuclei RNA-Seq

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+, NeuN+

tag: plate type

value: TRN Neun+


title: TRN1664

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_C5_S29


title: OTTA2014_2117_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: omentum


title: TRN1663

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_C4_S28


title: OTTA2014_2115_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2114_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1661

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_C2_S26


title: TRN1660

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_C1_S25


title: OTTA2014_2112_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2111_Clinical

description: single-sample normalized data


title: OTTA2014_2110_Clinical

description: single-sample normalized data

value: low

value: alive


title: TRN1659

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_C12_S36

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1658

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_C11_S35


title: OTTA2014_2113_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status


title: TRN1669

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_D10_S46


title: TRN1667

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_C8_S32


title: OTTA2014_2109_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1656

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_B9_S21


title: TRN1657

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_C10_S34


title: OTTA2014_2108_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2107_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1655

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_B8_S20

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2105_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1662

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_C3_S27


title: TRN1654

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_B7_S19


title: TRN1653

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_B6_S18


title: TRN1652

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_B5_S17


title: TRN1651

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_B4_S16


title: TRN1650

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_B3_S15


title: TRN1649

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_B2_S14


title: TRN1648

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_B1_S13


title: OTTA2014_2103_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2099_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1647

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_B12_S24


title: OTTA2014_2100_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2098_Clinical

description: single-sample normalized data


title: OTTA2014_2097_Clinical

description: single-sample normalized data

value: presumed adnexal


title: OTTA2014_2101_Clinical

description: single-sample normalized data


title: TRN1646

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_B11_S23

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2096_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2174_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1645

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_B10_S22


title: OTTA2014_2106_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1643

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_A8_S8


title: TRN1644

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_A9_S9


title: OTTA2014_2094_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2104_Clinical

description: single-sample normalized data


title: TRN1641

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_A6_S6

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1642

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_A7_S7


title: TRN1640

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_A5_S5


title: OTTA2014_2093_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2092_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2090_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2091_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2089_Clinical

description: single-sample normalized data


title: TRN1639

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_A4_S4

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1638

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_A3_S3


title: TRN1637

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_A2_S2


title: OTTA2014_2087_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2088_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1634

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_A11_S11


title: OTTA2014_2086_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1635

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_A12_S12


title: OTTA2014_2084_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1633

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_A10_S10

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1632

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_H9_S93

value: Violet+

value: TRN no Neun selection


title: OTTA2014_2083_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1631

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_H8_S92


title: TRN1630

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_H7_S91


title: TRN1629

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_H6_S90


title: OTTA2014_2081_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2085_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: peritoneal


title: OTTA2014_2095_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1628

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_H5_S89

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2082_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: dead

value: adnexal


title: OTTA2014_2080_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: VAN


title: OTTA2014_2079_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1636

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_A1_S1

value: sNuc-seq

value: No


title: TRN1627

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_H4_S88


title: OTTA2014_2078_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2077_Clinical

description: single-sample normalized data


title: TRN1626

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_H3_S87

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2076_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1625

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_H2_S86


title: OTTA2014_2074_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1624

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_H1_S85


title: TRN1623

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: TRN1622


title: OTTA2014_2073_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2072_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1621

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1620

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_G9_S81


title: TRN1619

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_G8_S80


title: OTTA2014_2070_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2071_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

value: unknown

tag: race/ethnicity


title: TRN1618


title: OTTA2014_2068_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: omentum


title: OTTA2014_2067_Clinical

description: single-sample normalized data

value: low

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1615

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1617

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_G6_S78


title: TRN1616

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_G5_S77


title: TRN1614

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_G3_S75


title: OTTA2014_2064_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2066_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

value: pathogenic BRCA2 mutation

tag: race/ethnicity

value: alive


title: OTTA2014_2065_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1611


title: TRN1612

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_G1_S73


title: OTTA2014_2075_Clinical

description: single-sample normalized data

value: any

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2063_Clinical

description: single-sample normalized data


title: OTTA2014_2062_Clinical

description: single-sample normalized data


title: TRN1609

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_G10_S82

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+

tag: plate type


title: TRN1608

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_F9_S69

value: TRN no Neun selection


title: OTTA2014_2069_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: presumed adnexal


title: OTTA2014_2060_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

value: high

tag: race/ethnicity


title: OTTA2014_2058_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1613


title: TRN1607

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_F8_S68


title: TRN1606

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_F7_S67


title: TRN1604

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_F5_S65


title: TRN1603

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_F4_S64


title: TRN1600


title: OTTA2014_2054_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2055_Clinical

description: single-sample normalized data


title: TRN1610

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_G11_S83

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2052_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: pathogenic BRCA1 mutation


title: OTTA2014_2053_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1599

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_F12_S72


title: OTTA2014_2049_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time


title: TRN1598

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_F11_S71


title: TRN1605

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_F6_S66


title: TRN1602

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: OTTA2014_2051_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

tag: site id


title: OTTA2014_2048_Clinical

description: single-sample normalized data

value: VAN


title: OTTA2014_2061_Clinical

description: single-sample normalized data


title: TRN1597

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_F10_S70

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2057_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1596

value: No


title: OTTA2014_2045_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1594

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_E7_S55


title: OTTA2014_2046_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1595

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_E8_S56


title: OTTA2014_2056_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1601

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1591


title: OTTA2014_2044_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1593

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_E6_S54


title: OTTA2014_2050_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1592


title: OTTA2014_2043_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2042_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1590

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_E3_S51

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2102_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

value: unknown

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1589

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_E2_S50


title: OTTA2014_2039_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2041_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2047_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1587

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_E12_S60

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1585

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_E10_S58


title: TRN1588


title: OTTA2014_2040_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2037_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1586

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_E11_S59


title: OTTA2014_2038_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2035_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: omentum

tag: experiment site

tag: site id


title: OTTA2014_2036_Clinical

description: single-sample normalized data


title: TRN1584

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_D9_S45

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1583

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_D8_S44


title: TRN1582

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_D7_S43


title: OTTA2014_2033_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

value: low

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2032_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1581


title: OTTA2014_2031_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1578

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_D3_S39


title: TRN1579

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_D4_S40


title: OTTA2014_2030_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1575

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_D12_S48

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1577


title: TRN1576


title: OTTA2014_2029_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2034_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1573


title: OTTA2014_2026_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2028_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2027_Clinical

description: single-sample normalized data


title: TRN1572

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_C9_S33

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2025_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1574

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: OTTA2014_2022_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2024_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1569


title: TRN1580

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_D5_S41


title: TRN1570


title: OTTA2014_2020_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2023_Clinical

description: single-sample normalized data


title: TRN1568

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2021_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2019_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2018_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1567


title: TRN1566


title: TRN1571


title: TRN1564

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_C1_S25


title: OTTA2014_2017_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1565

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1562


title: TRN1561

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_C10_S34


title: TRN1563

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_C12_S36


title: OTTA2014_2015_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2011_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1560


title: OTTA2014_2014_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2010_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2013_Clinical

description: single-sample normalized data


title: OTTA2014_2009_Clinical

description: single-sample normalized data


title: TRN1558

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_B7_S19

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2008_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1556

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_B5_S17


title: TRN1557


title: OTTA2014_2016_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1553


title: OTTA2014_2005_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1554

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_B3_S15


title: OTTA2014_2007_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2004_Clinical

description: single-sample normalized data


title: OTTA2014_2012_Clinical

description: single-sample normalized data


title: TRN1552

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_B1_S13

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2003_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1550


title: TRN1549

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_B10_S22


title: TRN1551


title: OTTA2014_2059_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1559

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_B8_S20


title: TRN1548


title: TRN1547


title: OTTA2014_2001_Clinical

description: single-sample normalized data

value: white

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: USC

value: UKO


title: OTTA2014_2002_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1555

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+

tag: plate type


title: OTTA2014_1999_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: alive


title: OTTA2014_1998_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2006_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: presumed adnexal


title: TRN1546

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_A7_S7

value: TRN no Neun selection


title: OTTA2014_1997_Clinical

description: single-sample normalized data

value: high

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1996_Clinical

description: single-sample normalized data

value: dead


title: TRN1545

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1544


title: OTTA2014_1995_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: adnexal


title: TRN1543

description:
nuclear RNA
TPM.TRN.tsv
X083116p1_A4_S4


title: OTTA2014_1994_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1542


title: OTTA2014_1993_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1541


title: OTTA2014_1992_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2000_Clinical

description: single-sample normalized data


title: TRN1540

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1539


title: TRN1538


title: OTTA2014_1991_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1537


title: OTTA2014_1989_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_1990_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1988_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1535

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1534

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_H7_S379


title: TRN1533


title: OTTA2014_1987_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1985_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1536

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_H9_S381


title: TRN1531

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_H4_S376


title: TRN1530


title: OTTA2014_1983_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1982_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1529

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1984_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1532


title: OTTA2014_1981_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1528


title: TRN1527


title: OTTA2014_1977_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1526

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_H11_S383


title: OTTA2014_1976_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1525

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_H10_S382

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1986_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1524


title: TRN1522

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_G7_S367


title: TRN1523

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_G8_S368


title: TRN1521

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: TRN1520

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_G5_S365


title: OTTA2014_1971_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_1973_Clinical

description: single-sample normalized data

value: other

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1519

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_G4_S364

value: sNuc-seq


title: OTTA2014_1974_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1980_Clinical

description: single-sample normalized data


title: OTTA2014_1972_Clinical

description: single-sample normalized data


title: TRN1518

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_G3_S363

tag: sample type

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: OTTA2014_1978_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status


title: TRN1517

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_G2_S362


title: TRN1516


title: OTTA2014_1970_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_1979_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1969_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1968_Clinical

description: single-sample normalized data


title: OTTA2014_1967_Clinical

description: single-sample normalized data


title: OTTA2014_1966_Clinical

description: single-sample normalized data


title: TRN1514

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_G11_S371

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1975_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1512

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_F9_S357


title: TRN1513

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_G10_S370


title: TRN1515


title: OTTA2014_1965_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_1962_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1511

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_F8_S356


title: OTTA2014_1963_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1964_Clinical

description: single-sample normalized data


title: TRN1510

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1961_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1960_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1508

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_F5_S353


title: TRN1509

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_F6_S354


title: OTTA2014_1959_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1507

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_F4_S352


title: TRN1506


title: OTTA2014_1957_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1504

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_F1_S349

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1955_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1958_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1502


title: TRN1503


title: TRN1501


title: OTTA2014_1953_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1954_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1499

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_E8_S344

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1498


title: TRN1500


title: TRN1496

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_E5_S341


title: TRN1497


title: OTTA2014_1951_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1948_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_1952_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1947_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1949_Clinical

description: single-sample normalized data


title: OTTA2014_1950_Clinical

description: single-sample normalized data


title: OTTA2014_1946_Clinical

description: single-sample normalized data


title: OTTA2014_1956_Clinical

description: single-sample normalized data

value: omentum


title: TRN1505

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_F2_S350

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1495


title: OTTA2014_1945_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

value: low

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1494


title: TRN1493


title: OTTA2014_1943_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: white


title: TRN1492

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_E1_S337


title: TRN1491

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: OTTA2014_1941_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: USC


title: TRN1490

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_E11_S347


title: TRN1489

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_E10_S346


title: OTTA2014_1939_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id

value: UKO


title: OTTA2014_1940_Clinical

description: single-sample normalized data


title: OTTA2014_1938_Clinical

description: single-sample normalized data


title: TRN1487

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+

tag: plate type


title: TRN1488


title: TRN1484

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_D5_S329


title: TRN1486

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_D7_S331


title: OTTA2014_1937_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: alive


title: TRN1485


title: TRN1482


title: OTTA2014_1934_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_1935_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1483


title: OTTA2014_1936_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1942_Clinical

description: single-sample normalized data


title: OTTA2014_1933_Clinical

description: single-sample normalized data


title: OTTA2014_1932_Clinical

description: single-sample normalized data


title: OTTA2014_1931_Clinical

description: single-sample normalized data


title: OTTA2014_1944_Clinical

description: single-sample normalized data


title: TRN1479

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_D12_S336

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1480


title: OTTA2014_1929_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1481

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_D2_S326


title: TRN1478

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_D11_S335


title: OTTA2014_1928_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_1930_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1477

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_D10_S334


title: TRN1476

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_C9_S321


title: TRN1475


title: OTTA2014_1926_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1927_Clinical

description: single-sample normalized data


title: OTTA2014_1925_Clinical

description: single-sample normalized data


title: OTTA2014_1924_Clinical

description: single-sample normalized data


title: TRN1473

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_C6_S318

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1472

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_C5_S317


title: TRN1474


title: OTTA2014_1923_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1468

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_C1_S313


title: TRN1469


title: TRN1466


title: OTTA2014_1922_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1471

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_C4_S316


title: OTTA2014_1920_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1918_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1465

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1921_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1919_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1467


title: OTTA2014_1917_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1916_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1464

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_B9_S309

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1463

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_B8_S308


title: OTTA2014_1915_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1914_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_1911_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1913_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1912_Clinical

description: single-sample normalized data


title: TRN1461

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_B6_S306

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1460

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_B5_S305


title: OTTA2014_1909_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1458

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: TRN1459


title: TRN1457

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_B2_S302


title: OTTA2014_1910_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1456


title: OTTA2014_1908_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1907_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1453

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1906_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1462


title: TRN1451


title: TRN1450

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_A7_S295


title: TRN1449


title: TRN1470

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_C3_S315


title: TRN1454

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_B11_S311


title: TRN1452


title: OTTA2014_1904_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_1899_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1905_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1902_Clinical

description: single-sample normalized data


title: OTTA2014_1901_Clinical

description: single-sample normalized data


title: OTTA2014_1900_Clinical

description: single-sample normalized data


title: TRN1446

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_A3_S291

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1898_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1897_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1444

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_A1_S289


title: TRN1455

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_B12_S312


title: TRN1442

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_A11_S299


title: TRN1443


title: OTTA2014_1893_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1894_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1441

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1440


title: OTTA2014_1903_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1891_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1439

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_H8_S284


title: OTTA2014_1892_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1438

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_H7_S283


title: OTTA2014_1890_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1437

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1887_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1448


title: OTTA2014_1889_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1436

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_H5_S281


title: OTTA2014_1888_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: presumed adnexal


title: TRN1447

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_A4_S292

value: TRN no Neun selection


title: OTTA2014_1886_Clinical

description: single-sample normalized data

value: high

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1435

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1896_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1445

description:
nuclear RNA
TPM.TRN.tsv
X083116P4_A2_S290


title: OTTA2014_1895_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_1885_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1884_Clinical

description: single-sample normalized data

value: dead

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1433

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1883_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1882_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: adnexal


title: TRN1431


title: TRN1432


title: OTTA2014_1881_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1430


title: OTTA2014_1880_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1429

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_H10_S286

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1427

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_G8_S272


title: TRN1426

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_G7_S271


title: OTTA2014_1878_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1428

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_G9_S273


title: TRN1425

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_G6_S270


title: OTTA2014_1879_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1424

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_G5_S269


title: TRN1421

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_G2_S266


title: OTTA2014_1876_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1434

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_H3_S279


title: TRN1423

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: OTTA2014_1873_Clinical

description: single-sample normalized data

value: all wildtypes

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id

value: SEA


title: TRN1420

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_G1_S265

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: OTTA2014_1874_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status


title: TRN1419


title: OTTA2014_1871_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_1870_Clinical

description: single-sample normalized data

value: low

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1868_Clinical

description: single-sample normalized data

value: white

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1422

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_G3_S267

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1872_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: pathogenic BRCA1 mutation

value: USC


title: TRN1418

value: Violet+


title: TRN1417


title: OTTA2014_1867_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_1869_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1877_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id

value: UKO


title: TRN1416

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_F9_S261

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1414

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_F7_S259


title: OTTA2014_1866_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1413

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_F6_S258


title: OTTA2014_1864_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: alive

value: presumed adnexal


title: OTTA2014_1863_Clinical

description: single-sample normalized data

value: high

value: pathogenic BRCA2 mutation

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1875_Clinical

description: single-sample normalized data

value: dead

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

tag: site id


title: OTTA2014_1862_Clinical

description: single-sample normalized data

value: all wildtypes

value: SEA


title: TRN1412

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_F5_S257

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type

value: TRN no Neun selection


title: TRN1410

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_F3_S255


title: TRN1411

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_F4_S256


title: TRN1409


title: OTTA2014_1858_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

value: white


title: OTTA2014_1859_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: USC


title: TRN1408

value: Violet+


title: OTTA2014_1861_Clinical

description: single-sample normalized data

value: low

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1860_Clinical

description: single-sample normalized data

value: HGSOC

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1407

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1406

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_F11_S263


title: TRN1415


title: OTTA2014_1857_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1404

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_E9_S249


title: OTTA2014_1856_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: alive


title: OTTA2014_1854_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: presumed adnexal


title: TRN1405

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_F10_S262


title: OTTA2014_1865_Clinical

description: single-sample normalized data

value: high

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1853_Clinical

description: single-sample normalized data

value: hispanic


title: TRN1403

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1402

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_E7_S247


title: OTTA2014_1852_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: dead


title: TRN1399

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_E4_S244


title: TRN1400

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_E5_S245


title: OTTA2014_1849_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

value: pathogenic BRCA2 mutation

tag: race/ethnicity


title: OTTA2014_1850_Clinical

description: single-sample normalized data

value: all wildtypes

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1848_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id

value: SEA


title: TRN1397

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1395

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_E12_S252

value: No


title: TRN1394

value: TRN no Neun selection


title: OTTA2014_1847_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

value: pathogenic BRCA1 mutation


title: TRN1396

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_E1_S241


title: OTTA2014_1855_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: white

value: USC


title: OTTA2014_1845_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1843_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1846_Clinical

description: single-sample normalized data


title: OTTA2014_1844_Clinical

description: single-sample normalized data

value: low


title: TRN1392

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_D9_S237

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+

tag: plate type


title: TRN1391

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_D8_S236


title: TRN1401

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_E6_S246


title: OTTA2014_1842_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1851_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: presumed adnexal


title: TRN1389

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_D6_S234


title: OTTA2014_1840_Clinical

description: single-sample normalized data

value: high

tag: year of diagnosis

tag: vital status

value: alive

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1839_Clinical

description: single-sample normalized data

value: dead

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1838_Clinical

description: single-sample normalized data


title: TRN1388

description:
nuclear RNA
TPM.TRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1387


title: TRN1386


title: TRN1398

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_E3_S243


title: OTTA2014_1837_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1836_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1383

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_D12_S240


title: OTTA2014_1835_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1834_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1382

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1832_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1393

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_E10_S250


title: OTTA2014_1841_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1381

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_D10_S238


title: TRN1379


title: OTTA2014_1831_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1384

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_D1_S229


title: TRN1385

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_D2_S230


title: TRN1390

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_D7_S235


title: OTTA2014_1830_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1827_Clinical

description: single-sample normalized data


title: OTTA2014_1828_Clinical

description: single-sample normalized data


title: TRN1376

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1378

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_C7_S223


title: OTTA2014_1833_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1826_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_1829_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1373

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_C2_S218


title: TRN1375

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_C4_S220


title: OTTA2014_1825_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1372

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_C1_S217

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1380

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_C9_S225


title: TRN1371


title: OTTA2014_1824_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1822_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_1823_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1368


title: OTTA2014_1819_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1818_Clinical

description: single-sample normalized data


title: OTTA2014_1821_Clinical

description: single-sample normalized data


title: TRN1364

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_B5_S209

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1374

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_C3_S219


title: OTTA2014_1814_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: pathogenic BRCA2 mutation


title: TRN1363


title: TRN1370


title: OTTA2014_1820_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1369


title: TRN1377

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_C6_S222


title: OTTA2014_1817_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1367


title: TRN1366

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_B7_S211


title: OTTA2014_1815_Clinical

description: single-sample normalized data

value: all wildtypes

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1816_Clinical

description: single-sample normalized data

value: SEA


title: TRN1357

description:
nuclear RNA
TPM.TRN.tsv
no processed data

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1365

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_B6_S210

value: No


title: TRN1359

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_B12_S216

value: TRN no Neun selection


title: TRN1356


title: OTTA2014_1807_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1813_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

value: pathogenic BRCA1 mutation

tag: race/ethnicity


title: OTTA2014_1806_Clinical

description: single-sample normalized data

value: white

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1354


title: TRN1355


title: OTTA2014_1812_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

value: USC

tag: site id


title: TRN1361

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_B2_S206

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1811_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1803_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_1802_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1360

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_B1_S205


title: OTTA2014_1810_Clinical

description: single-sample normalized data

value: low

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1351

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+

tag: plate type


title: OTTA2014_1809_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1800_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: presumed adnexal


title: TRN1358

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_B11_S215


title: TRN1362

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_B3_S207


title: TRN1352


title: OTTA2014_1799_Clinical

description: single-sample normalized data

value: high

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1347

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_A12_S204


title: OTTA2014_1808_Clinical

description: single-sample normalized data

value: alive

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1805_Clinical

description: single-sample normalized data


title: OTTA2014_1798_Clinical

description: single-sample normalized data

value: dead


title: OTTA2014_1804_Clinical

description: single-sample normalized data


title: TRN1346

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_A11_S203

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1796_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1801_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1345


title: TRN1344

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_H9_S189


title: OTTA2014_1795_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1343


title: OTTA2014_1793_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1342

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_H7_S187

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1341


title: TRN1350

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_A3_S195


title: TRN1349

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_A2_S194


title: OTTA2014_1791_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1348


title: TRN1353

description:
nuclear RNA
TPM.TRN.tsv
X083116P3_A6_S198


title: OTTA2014_1797_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1338

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_H3_S183


title: OTTA2014_1792_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1794_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1790_Clinical

description: single-sample normalized data


title: TRN1340

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_H5_S185

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1786_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1785_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1336


title: TRN1333


title: TRN1337


title: TRN1335


title: OTTA2014_1783_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1787_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1788_Clinical

description: single-sample normalized data


title: TRN1334

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1330

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_G7_S175


title: OTTA2014_1781_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1789_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

value: pathogenic BRCA2 mutation

tag: race/ethnicity


title: TRN1332

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_G9_S177


title: OTTA2014_1778_Clinical

description: single-sample normalized data

value: all wildtypes

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1784_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id

value: SEA


title: OTTA2014_1782_Clinical

description: single-sample normalized data


title: TRN1339

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_H4_S184

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1777_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1329

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_G6_S174

value: No


title: TRN1328

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_G5_S173

value: TRN no Neun selection


title: TRN1327

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_G4_S172


title: OTTA2014_1780_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

value: unknown

tag: race/ethnicity


title: TRN1331

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_G8_S176


title: OTTA2014_1779_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1776_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1322

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_G11_S179

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1323

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: TRN1321

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_G10_S178


title: TRN1325


title: TRN1319

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_F8_S164


title: OTTA2014_1775_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1774_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1324


title: OTTA2014_1773_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1771_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1772_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation


title: TRN1320

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_F9_S165

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1317

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_F6_S162


title: TRN1316


title: TRN1313

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_F2_S158


title: TRN1312

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_F1_S157


title: TRN1315

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_F4_S160


title: TRN1318


title: TRN1314


title: OTTA2014_1769_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: white


title: OTTA2014_1768_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: USC


title: TRN1326


title: TRN1311


title: OTTA2014_1767_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1766_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1764_Clinical

description: single-sample normalized data

value: low

value: hispanic


title: OTTA2014_1759_Clinical

description: single-sample normalized data

value: HGSOC


title: TRN1309

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+

tag: plate type


title: OTTA2014_1765_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: presumed adnexal


title: OTTA2014_1763_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

value: high

tag: race/ethnicity


title: TRN1307


title: OTTA2014_1762_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1757_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1761_Clinical

description: single-sample normalized data


title: OTTA2014_1756_Clinical

description: single-sample normalized data

value: alive


title: TRN1308

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_E9_S153

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1310


title: TRN1306


title: OTTA2014_1770_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes


title: TRN1305

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_E6_S150


title: OTTA2014_1758_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: SEA


title: OTTA2014_1755_Clinical

description: single-sample normalized data

value: pathogenic BRCA2 mutation

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1760_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1304

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_E5_S149

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: TRN1303

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_E4_S148

value: TRN no Neun selection


title: TRN1302


title: TRN1301


title: OTTA2014_1753_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1754_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_1751_Clinical

description: single-sample normalized data

value: white

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1752_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

value: USC

tag: site id


title: OTTA2014_1750_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation


title: TRN1299

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_E12_S156

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1749_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1298


title: OTTA2014_1748_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

value: low

tag: race/ethnicity


title: TRN1297


title: OTTA2014_1747_Clinical

description: single-sample normalized data

value: HGSOC

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1746_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1295

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_D8_S140

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+

tag: plate type


title: TRN1294

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_D7_S139


title: TRN1293


title: OTTA2014_1744_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: presumed adnexal


title: TRN1292


title: TRN1291

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_D4_S136


title: OTTA2014_1743_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: hispanic


title: OTTA2014_1742_Clinical

description: single-sample normalized data

value: high

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time


title: TRN1300

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_E1_S145


title: TRN1289

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_D2_S134


title: TRN1288

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_D1_S133


title: OTTA2014_1741_Clinical

description: single-sample normalized data

value: all wildtypes

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1738_Clinical

description: single-sample normalized data

value: alive

value: SEA


title: OTTA2014_1739_Clinical

description: single-sample normalized data


title: OTTA2014_1740_Clinical

description: single-sample normalized data


title: TRN1285

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_D10_S142

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1296

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_D9_S141

value: No


title: TRN1286

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_D11_S143

value: TRN no Neun selection


title: OTTA2014_1737_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status


title: TRN1283

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_C8_S128


title: OTTA2014_1736_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: white


title: OTTA2014_1735_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: USC


title: OTTA2014_1733_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_1734_Clinical

description: single-sample normalized data


title: OTTA2014_1745_Clinical

description: single-sample normalized data

value: pathogenic BRCA2 mutation


title: TRN1290

description:
nuclear RNA
TPM.TRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1279

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_C4_S124


title: TRN1278

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_C3_S123


title: TRN1281

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_C6_S126


title: TRN1280


title: TRN1277

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_C2_S122


title: OTTA2014_1729_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1730_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

value: pathogenic BRCA1 mutation

tag: race/ethnicity


title: OTTA2014_1731_Clinical

description: single-sample normalized data

value: HGSOC

value: low

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1287

value: Violet+


title: TRN1275


title: TRN1274

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_C11_S131


title: OTTA2014_1727_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: presumed adnexal

tag: experiment site

tag: site id


title: TRN1273

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1732_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1728_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

value: high

tag: race/ethnicity


title: OTTA2014_1725_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1722_Clinical

description: single-sample normalized data

value: all wildtypes

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1282

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_C7_S127

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1726_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1723_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: alive


title: TRN1272

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_B9_S117


title: TRN1271


title: TRN1270

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_B7_S115


title: OTTA2014_1721_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: SEA


title: TRN1284

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_C9_S129

value: sNuc-seq


title: OTTA2014_1724_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1269

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_B6_S114

tag: sample type

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: OTTA2014_1719_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1276

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_C1_S121

value: TRN no Neun selection


title: TRN1268

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_B5_S113


title: TRN1267

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_B4_S112


title: OTTA2014_1718_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

value: unknown

tag: race/ethnicity


title: OTTA2014_1717_Clinical

description: single-sample normalized data

value: white

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_1716_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

value: USC

tag: site id


title: TRN1265

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_B2_S110

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1266

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_B3_S111


title: TRN1263


title: TRN1264


title: OTTA2014_1715_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: pathogenic BRCA2 mutation


title: TRN1262


title: OTTA2014_1713_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_1714_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1260


title: TRN1259


title: TRN1261

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_B10_S118


title: OTTA2014_1712_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1258

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_A7_S103

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_1711_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_1720_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1257

description:
nuclear RNA
TPM.TRN.tsv
X083116P2_A6_S102