title: OTTA2014_2860_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: sample region necrosis

tag: study entry delay


title: notTRN7

status: Public on Jul 22 2020

type: SRA

city: Cambridge

first: Joshua

last: Levin

state: MA

address: 75 Ames St

department: Stanley Center

country: USA

institute: Broad Institute

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_A4_S4

library_source: transcriptomic

data_processing:
RSEM v1.2.87 was run on raw fastq fileswith default parameters on alignments created by Bowtie on UCSC gene annotation
TPM estimates were tranformed to log space by taking log TPM +1
TopHat2 v2.0.10 was used to map fastq files to mm10 reference
RNASeq-QC was run on the TopHat2 bamfiles to get QC metrics
For TRN and patch-seq samples, cells were removed if they had less than 40% genome mapping rate or or less than 1500 detected genes
Clustering and DE analysis of TRN samples was perfomed with biSNE software (https://github.com/yinqingl/nucseq_analysis), including normalizing the log TPM data to a normalized log TPM
For non-TRN samples, nuclei expressing <1500 genes were removed
Seurat v2.2.0 was used for clustering of the non-TRN samples
Genome_build: mm10
Supplementary_files_format_and_content: Formatted expression matrix (tab deliminated text file) with cells as columns, genes as rows, and TPM values as entries

molecule: total RNA

organism: Mus musculus

source_name: Hippocampus

extract_protocol:
Sucrose gradient nuclei isolation followed by FACS sorting for Violet+, Violet+ GFP+ or Violet+ NeuN+ nuclei
Modified SMARTseq2 single nuclei RNA-Seq

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: plate type

value: Hippocampus


title: OTTA2014_2867_Clinical

type: RNA

city: Vancouver

first: Michael

middle: S

last: Anglesio

state: BC

department: Obstetrics and Gynecology

country: Canada

institute: University of British Columbia

description: single-sample normalized data

hyb_protocol: NanoString Gene Expression protocol using 500ng of Total RNA as measured by NanoDrop spectrophotmeter. RNA is combined with capture and reporter codesets, and hybridization buffer. Reaction mixtures are hybridized in a thermal cycler at 65C for either short (16H) or long (20H) hybridization. Samples are then washed and fixed to cartridges using the nCounter Prep Station (high-sensitivity mode) for imaging.

scan_protocol: imaging on nCounter Digital Analyzer at maximum FOV

data_processing: Samples data is processed and normalized following protocols described in Talhouk et al (PMID: 27096160) using PrOTYPE. Briefly: Count data is Log2 transformed, the mean of housekeeping genes (ACTB, RPL19, SDHA, POLR1B, and PGK1) subtracted on a per-sample basis, and then normalized relative to reference samples (denoted as Pool1, Pool2, and Pool3). Code available at https://github.com/AlineTalhouk/PrOType

organism: Homo sapiens

source_name: primary high-grade serous tubo-ovarian carcinoma

label_protocol: NanoString probe-specific unique barcode

extract_protocol: Total RNA extracted with the Qiagen miRNeasy FFPE kit (modified protocol)

tag: diagnosis

value: HGSOC

tag: age at diagnosis

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes

tag: race/ethnicity

value: white

tag: year of diagnosis

tag: vital status

value: alive

tag: overall survival time

tag: progression-free survival time

tag: anatomical site

value: presumed adnexal

tag: experiment site

value: USC

tag: site id

value: MAY


title: notTRN8

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_A5_S5


title: OTTA2014_2859_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: sample region necrosis

value: any

value: dead

tag: study entry delay

value: adnexal


title: notTRN6

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_A3_S3

tag: sample type

tag: used for patch-seq

tag: plate type


title: notTRN5

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_A2_S2


title: OTTA2014_2857_Clinical

description: single-sample normalized data

tag: diagnosis

tag: age at diagnosis

tag: Stage

value: low


title: notTRN4

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_A1_S1


title: OTTA2014_2861_Clinical

description: single-sample normalized data

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_2856_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2858_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2855_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: sample region necrosis

tag: site id


title: notTRN3

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_A12_S12

tag: sample type

value: sNuc-seq

tag: used for patch-seq


title: OTTA2014_2854_Clinical

description: single-sample normalized data

tag: diagnosis

tag: study entry delay


title: notTRN2

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_A11_S11

value: No

tag: plate type


title: TRN2400

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_H9_S381

source_name: TRN

tag: facs sorting signal

value: Violet+, NeuN+

value: TRN Neun+


title: notTRN1

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_A10_S10

value: Hippocampus


title: TRN2399

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_H8_S380


title: TRN2398

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_H7_S379


title: OTTA2014_2853_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes


title: OTTA2014_2852_Clinical

description: single-sample normalized data

value: high

tag: race/ethnicity

value: white

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: TRN2396

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_H5_S377


title: TRN2397

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_H6_S378


title: OTTA2014_2851_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site

value: USC


title: OTTA2014_2850_Clinical

description: single-sample normalized data

tag: sample region necrosis

value: alive

value: presumed adnexal

tag: site id

value: MAY


title: OTTA2014_2849_Clinical

description: single-sample normalized data

tag: diagnosis

value: dead

tag: study entry delay

value: adnexal


title: OTTA2014_2848_Clinical

description: single-sample normalized data

value: any


title: OTTA2014_2847_Clinical

description: single-sample normalized data


title: TRN2394

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_H3_S375

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2393

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_H2_S374


title: TRN2392

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_H1_S373


title: TRN2395

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_H4_S376


title: TRN2390

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_H11_S383


title: OTTA2014_2845_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2844_Clinical

description: single-sample normalized data

value: low

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2842_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2843_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2391

description:
nuclear RNA
TPM.TRN.tsv
no processed data

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2840_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2841_Clinical

description: single-sample normalized data

tag: race/ethnicity

value: hispanic

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2839_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2838_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2389

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_H10_S382

tag: sample type

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+, NeuN+

tag: plate type


title: TRN2388

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_G9_S369

value: TRN Neun+


title: OTTA2014_2837_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2385

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_G6_S366


title: OTTA2014_2846_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2836_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: all wildtypes

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2386

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_G7_S367


title: OTTA2014_2835_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: high

value: pathogenic BRCA2 mutation

tag: study entry delay

tag: site id


title: TRN2382

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_G3_S363

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2833_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: white

value: USC


title: TRN2384

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_G5_S365


title: TRN2380

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_G1_S361


title: OTTA2014_2834_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

value: alive

tag: overall survival time

value: presumed adnexal


title: OTTA2014_2831_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: dead

tag: progression-free survival time

tag: anatomical site

tag: experiment site

value: MAY


title: TRN2383

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_G4_S364


title: OTTA2014_2832_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: pathogenic BRCA1 mutation

tag: study entry delay

tag: site id


title: TRN2381

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_G2_S362

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2378

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_G11_S371


title: TRN2379

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_G12_S372


title: TRN2387

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_G8_S368


title: TRN2377

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_G10_S370


title: OTTA2014_2829_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2828_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: adnexal


title: OTTA2014_2830_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2827_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2375

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_F8_S356

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2826_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2374

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_F7_S355

value: No


title: TRN2376

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_F9_S357

value: Violet+, NeuN+


title: OTTA2014_2823_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2824_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2825_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2372

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_F5_S353

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type

value: TRN Neun+


title: OTTA2014_2822_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2371

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_F4_S352


title: TRN2370

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_F3_S351


title: TRN2373

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_F6_S354


title: OTTA2014_2820_Clinical

description: single-sample normalized data

value: all wildtypes

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2821_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: high

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2819_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: unknown

tag: study entry delay

tag: site id


title: TRN2369

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_F2_S350

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2368

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_F1_S349


title: TRN2367

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_F12_S360


title: OTTA2014_2817_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: white


title: OTTA2014_2818_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: USC


title: OTTA2014_2816_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2815_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: alive

tag: study entry delay

tag: site id


title: TRN2364

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_E9_S345

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2365

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_F10_S358


title: OTTA2014_2814_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: presumed adnexal


title: TRN2362

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_E7_S343


title: TRN2363

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_E8_S344


title: OTTA2014_2813_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

value: peritoneal


title: OTTA2014_2812_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site

value: MAY


title: TRN2366

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_F11_S359


title: OTTA2014_2811_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: low

tag: study entry delay

tag: site id


title: OTTA2014_2807_Clinical

description: single-sample normalized data


title: TRN2360

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_E5_S341

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2359

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_E4_S340


title: TRN2356

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_E1_S337


title: TRN2353

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_E10_S346


title: TRN2361

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_E6_S342


title: TRN2354

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_E11_S347


title: TRN2355

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_E12_S348


title: TRN2358

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_E3_S339


title: OTTA2014_2808_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status

value: omentum


title: TRN2357

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_E2_S338

value: sNuc-seq

value: No


title: OTTA2014_2806_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: adnexal


title: OTTA2014_2802_Clinical

description: single-sample normalized data

value: HGSOC

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2810_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: all wildtypes

tag: study entry delay

tag: site id


title: OTTA2014_2805_Clinical

description: single-sample normalized data

value: high


title: TRN2351

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_D8_S332

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+, NeuN+

tag: plate type

value: TRN Neun+


title: TRN2352

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_D9_S333


title: OTTA2014_2801_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: USC


title: OTTA2014_2809_Clinical

description: single-sample normalized data

tag: race/ethnicity

value: white

tag: year of diagnosis

tag: vital status

value: alive

tag: overall survival time


title: OTTA2014_2799_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: pathogenic BRCA1 mutation

value: dead

tag: progression-free survival time

tag: anatomical site

value: presumed adnexal

tag: experiment site


title: TRN2347

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_D4_S328


title: TRN2350

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_D7_S331


title: TRN2349

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_D6_S330


title: TRN2345

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_D2_S326


title: OTTA2014_2804_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id

value: MAY


title: OTTA2014_2800_Clinical

description: single-sample normalized data

value: any


title: TRN2344

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_D1_S325

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2798_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

value: low

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2792_Clinical

description: single-sample normalized data

value: unknown

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2793_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2341

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_D10_S334

value: sNuc-seq

value: No


title: OTTA2014_2803_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region necrosis

tag: study entry delay

value: adnexal

tag: site id


title: TRN2348

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_D5_S329

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2346

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_D3_S327


title: OTTA2014_2790_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes


title: OTTA2014_2796_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2787_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2342

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_D11_S335

value: Violet+, NeuN+

value: TRN Neun+


title: TRN2343

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_D12_S336


title: OTTA2014_2795_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: white

tag: study entry delay

value: USC

tag: site id


title: OTTA2014_2791_Clinical

description: single-sample normalized data


title: TRN2334

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_C3_S315

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2333

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_C2_S314


title: TRN2340

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_C9_S321


title: TRN2339

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_C8_S320


title: TRN2332

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_C1_S313


title: OTTA2014_2784_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2797_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

value: alive

tag: overall survival time


title: OTTA2014_2789_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: dead

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2337

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_C6_S318


title: OTTA2014_2788_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

value: peritoneal

tag: site id


title: TRN2338

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_C7_S319

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2329

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_C10_S322


title: TRN2336

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_C5_S317


title: TRN2335

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_C4_S316


title: TRN2327

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_B8_S308


title: OTTA2014_2786_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: MAY


title: OTTA2014_2785_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2794_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: hispanic

tag: progression-free survival time

tag: anatomical site

value: presumed adnexal

tag: experiment site


title: TRN2331

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_C12_S324

value: sNuc-seq


title: TRN2323

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_B4_S304

value: No


title: OTTA2014_2783_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region necrosis

value: any

tag: study entry delay

tag: site id


title: TRN2330

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_C11_S323

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2322

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_B3_S303


title: OTTA2014_2781_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2780_Clinical

description: single-sample normalized data

value: all wildtypes

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: adnexal


title: TRN2328

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_B9_S309

value: Violet+, NeuN+

value: TRN Neun+


title: OTTA2014_2779_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: white

tag: progression-free survival time

tag: anatomical site

tag: experiment site

value: USC


title: OTTA2014_2778_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: dead

tag: study entry delay

tag: site id


title: TRN2320

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_B1_S301

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2770_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

value: pathogenic BRCA2 mutation


title: OTTA2014_2777_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

value: alive

tag: overall survival time

value: MAY


title: OTTA2014_2776_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2775_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: pathogenic BRCA1 mutation

tag: study entry delay

value: omentum

tag: site id


title: OTTA2014_2782_Clinical

description: single-sample normalized data

value: presumed adnexal


title: OTTA2014_2769_Clinical

description: single-sample normalized data

value: HGSOC


title: TRN2318

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_B11_S311

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: TRN2325

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_B6_S306


title: TRN2324

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_B5_S305


title: TRN2321

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_B2_S302


title: OTTA2014_2774_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

value: low

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2772_Clinical

description: single-sample normalized data

value: high

value: any

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: adnexal


title: TRN2315

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_A8_S296

value: Violet+, NeuN+

value: TRN Neun+


title: OTTA2014_2767_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: all wildtypes

value: white

value: dead

tag: progression-free survival time

tag: anatomical site

tag: experiment site

value: USC


title: OTTA2014_2771_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id

value: MAY


title: TRN2326

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_B7_S307

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2316

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_A9_S297


title: TRN2317

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_B10_S310


title: TRN2314

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_A7_S295


title: OTTA2014_2766_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2765_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: TRN2319

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: OTTA2014_2768_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: unknown

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2763_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: OTTA2014_2764_Clinical

description: single-sample normalized data


title: OTTA2014_2773_Clinical

description: single-sample normalized data


title: OTTA2014_2762_Clinical

description: single-sample normalized data


title: TRN2312

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_A5_S293

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2311

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_A4_S292


title: TRN2313

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_A6_S294


title: TRN2307

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_A12_S300


title: TRN2309

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_A2_S290


title: OTTA2014_2760_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2761_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: TRN2308

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_A1_S289


title: TRN2310

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_A3_S291


title: OTTA2014_2759_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2758_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: OTTA2014_2756_Clinical

description: single-sample normalized data


title: OTTA2014_2757_Clinical

description: single-sample normalized data


title: TRN2304

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_H9_S285

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2305

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_A10_S298


title: OTTA2014_2755_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2754_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: TRN2303

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_H8_S284


title: OTTA2014_2753_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: alive

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2752_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: hispanic

tag: study entry delay

value: presumed adnexal

tag: site id


title: TRN2301

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_H6_S282

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2302

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_H7_S283

value: No


title: TRN2300

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_H5_S281


title: TRN2299

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_H4_S280


title: OTTA2014_2751_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2298

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_H3_S279


title: TRN2306

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpD_A11_S299


title: OTTA2014_2750_Clinical

description: single-sample normalized data

value: high

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2748_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: any

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2749_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: pathogenic BRCA2 mutation

tag: study entry delay

value: adnexal

tag: site id


title: TRN2297

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_H2_S278

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+, NeuN+

tag: plate type

value: TRN Neun+


title: TRN2295

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_H12_S288


title: OTTA2014_2747_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes

value: white


title: TRN2293

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_H10_S286


title: OTTA2014_2744_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

value: USC


title: TRN2294

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_H11_S287


title: OTTA2014_2746_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site

value: MAY


title: OTTA2014_2745_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2292

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_G9_S273

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2291

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_G8_S272


title: TRN2289

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_G6_S270


title: OTTA2014_2742_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2743_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

value: alive

tag: overall survival time


title: OTTA2014_2740_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2290

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_G7_S271


title: OTTA2014_2739_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: OTTA2014_2741_Clinical

description: single-sample normalized data

value: unknown


title: TRN2288

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_G5_S269

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2287

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_G4_S268


title: OTTA2014_2737_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: omentum


title: OTTA2014_2738_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: presumed adnexal


title: OTTA2014_2736_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2284

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_G1_S265

value: sNuc-seq

value: No


title: TRN2283

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_G12_S276


title: TRN2282

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_G11_S275


title: TRN2281

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_G10_S274


title: TRN2296

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_H1_S277


title: OTTA2014_2734_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region necrosis

value: high

tag: study entry delay

tag: site id


title: OTTA2014_2733_Clinical

description: single-sample normalized data


title: OTTA2014_2731_Clinical

description: single-sample normalized data


title: TRN2279

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_F8_S260

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2280

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_F9_S261


title: TRN2286

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_G3_S267


title: TRN2285

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_G2_S266


title: OTTA2014_2729_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status


title: TRN2276

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_F5_S257


title: TRN2278

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_F7_S259


title: OTTA2014_2728_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: adnexal


title: TRN2275

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_F4_S256

value: Violet+, NeuN+


title: TRN2277

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_F6_S258

value: TRN Neun+


title: TRN2274

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_F3_S255


title: OTTA2014_2726_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: all wildtypes

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2725_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: white

tag: study entry delay

tag: site id


title: OTTA2014_2735_Clinical

description: single-sample normalized data

value: dead


title: TRN2273

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_F2_S254

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2723_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: USC


title: TRN2272

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_F1_S253


title: TRN2271

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_F12_S264


title: OTTA2014_2722_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: MAY


title: OTTA2014_2732_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: low

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2730_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: unknown

tag: study entry delay

tag: site id


title: OTTA2014_2721_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation

value: peritoneal


title: TRN2270

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_F11_S263

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2269

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_F10_S262

value: No


title: OTTA2014_2720_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: presumed adnexal


title: TRN2268

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_E9_S249


title: TRN2267

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_E8_S248


title: OTTA2014_2717_Clinical

description: single-sample normalized data

value: high

value: any

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2718_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: alive

tag: progression-free survival time

tag: anatomical site

value: adnexal

tag: experiment site


title: OTTA2014_2727_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: all wildtypes

tag: study entry delay

tag: site id


title: OTTA2014_2719_Clinical

description: single-sample normalized data

value: white


title: TRN2266

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_E7_S247

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+, NeuN+

tag: plate type

value: TRN Neun+


title: TRN2264

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_E5_S245


title: TRN2263

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_E4_S244


title: OTTA2014_2716_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: USC

value: MAY


title: TRN2265

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_E6_S246


title: OTTA2014_2713_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time


title: OTTA2014_2714_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2262

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_E3_S243


title: OTTA2014_2724_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: unknown

tag: study entry delay

tag: site id


title: TRN2261

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_E2_S242

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2712_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: hispanic


title: OTTA2014_2711_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: TRN2259

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_E12_S252

value: sNuc-seq


title: TRN2257

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_E10_S250

value: No


title: OTTA2014_2709_Clinical

description: single-sample normalized data

value: HGSOC

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2258

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_E11_S251


title: OTTA2014_2708_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: OTTA2014_2707_Clinical

description: single-sample normalized data


title: OTTA2014_2706_Clinical

description: single-sample normalized data

value: pathogenic BRCA2 mutation

value: presumed adnexal


title: OTTA2014_2715_Clinical

description: single-sample normalized data

value: high


title: OTTA2014_2705_Clinical

description: single-sample normalized data

value: low

value: pathogenic BRCA1 mutation


title: TRN2256

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_D9_S237

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2704_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status

value: alive

value: adnexal


title: TRN2251

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_D4_S232

value: Violet+, NeuN+

value: TRN Neun+


title: TRN2253

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_D6_S234


title: TRN2254

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_D7_S235


title: TRN2249

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_D2_S230


title: OTTA2014_2702_Clinical

description: single-sample normalized data

value: all wildtypes

tag: race/ethnicity

value: white

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: USC

value: MAY


title: OTTA2014_2699_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: unknown

value: dead

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2248

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_D1_S229

value: sNuc-seq

value: No


title: OTTA2014_2700_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region necrosis

value: pathogenic BRCA2 mutation

tag: study entry delay

tag: site id


title: TRN2247

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_D12_S240

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2250

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_D3_S231


title: OTTA2014_2698_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2260

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_E1_S241


title: OTTA2014_2710_Clinical

description: single-sample normalized data

value: low

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: TRN2255

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_D8_S236


title: TRN2246

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_D11_S239


title: TRN2245

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_D10_S238


title: OTTA2014_2697_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2696_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: any

tag: study entry delay

tag: site id


title: OTTA2014_2694_Clinical

description: single-sample normalized data

value: alive


title: TRN2244

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_C9_S225

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2252

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_D5_S233


title: OTTA2014_2703_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: presumed adnexal


title: OTTA2014_2695_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: adnexal


title: TRN2243

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_C8_S224

value: Violet+, NeuN+

value: TRN Neun+


title: OTTA2014_2693_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: all wildtypes

value: white

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2242

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_C7_S223


title: TRN2241

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_C6_S222


title: OTTA2014_2692_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

value: USC

tag: site id

value: MAY


title: TRN2239

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_C4_S220

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2691_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: dead


title: OTTA2014_2701_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2690_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: unknown

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2240

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_C5_S221

value: sNuc-seq

value: No


title: OTTA2014_2689_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2238

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_C3_S219

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2688_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: hispanic


title: TRN2236

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_C1_S217


title: TRN2237

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_C2_S218


title: OTTA2014_2687_Clinical

description: single-sample normalized data

value: low

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: TRN2235

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_C12_S228


title: TRN2234

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_C11_S227


title: TRN2233

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_C10_S226


title: OTTA2014_2686_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: any

value: pathogenic BRCA1 mutation

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2685_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

value: adnexal

tag: site id


title: OTTA2014_2684_Clinical

description: single-sample normalized data


title: TRN2232

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_B9_S213

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+, NeuN+

tag: plate type


title: TRN2231

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_B8_S212

value: TRN Neun+


title: OTTA2014_2682_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes


title: OTTA2014_2683_Clinical

description: single-sample normalized data

tag: race/ethnicity

value: white

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: TRN2230

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_B7_S211


title: OTTA2014_2680_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

value: presumed adnexal

tag: experiment site

value: USC


title: TRN2229

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_B6_S210


title: OTTA2014_2679_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: dead

tag: study entry delay

tag: site id

value: MAY


title: OTTA2014_2681_Clinical

description: single-sample normalized data


title: TRN2226

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_B3_S207

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2227

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_B4_S208

value: No


title: TRN2225

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_B2_S206


title: OTTA2014_2678_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: alive


title: TRN2224

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_B1_S205


title: OTTA2014_2676_Clinical

description: single-sample normalized data

value: high

value: unknown

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: TRN2223

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_B12_S216


title: OTTA2014_2675_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: any

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2673_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2222

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_B11_S215

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2674_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2220

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_A9_S201


title: TRN2221

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_B10_S214


title: OTTA2014_2671_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: omentum


title: TRN2228

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_B5_S209


title: TRN2219

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_A8_S200


title: OTTA2014_2672_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

value: adnexal

tag: experiment site


title: OTTA2014_2669_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2217

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_A6_S198

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+, NeuN+

tag: plate type


title: OTTA2014_2670_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2216

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_A5_S197

value: TRN Neun+


title: TRN2218

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_A7_S199


title: TRN2215

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_A4_S196


title: OTTA2014_2668_Clinical

description: single-sample normalized data

value: all wildtypes

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2677_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: low

value: white

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2666_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

value: USC

tag: site id


title: TRN2214

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_A3_S195

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2667_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2665_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time


title: TRN2213

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_A2_S194


title: TRN2212

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_A1_S193


title: TRN2211

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_A12_S204


title: OTTA2014_2663_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site

value: MAY


title: OTTA2014_2664_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2210

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_A11_S203

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2209

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpC_A10_S202

value: No


title: TRN2208

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_H9_S189


title: TRN2206

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_H7_S187


title: OTTA2014_2661_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: presumed adnexal


title: OTTA2014_2659_Clinical

description: single-sample normalized data

value: high

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

value: alive

tag: overall survival time


title: TRN2207

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_H8_S188


title: OTTA2014_2660_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: any

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2657_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: OTTA2014_2658_Clinical

description: single-sample normalized data


title: OTTA2014_2656_Clinical

description: single-sample normalized data


title: OTTA2014_2655_Clinical

description: single-sample normalized data


title: TRN2204

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_H5_S185

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2203

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_H4_S184


title: TRN2202

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_H3_S183


title: OTTA2014_2653_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2654_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: TRN2200

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_H1_S181


title: TRN2201

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_H2_S182


title: TRN2199

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_H12_S192


title: OTTA2014_2662_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

value: adnexal

tag: experiment site


title: OTTA2014_2651_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: pathogenic BRCA2 mutation

tag: study entry delay

tag: site id


title: OTTA2014_2650_Clinical

description: single-sample normalized data


title: OTTA2014_2648_Clinical

description: single-sample normalized data


title: OTTA2014_2649_Clinical

description: single-sample normalized data


title: TRN2197

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_H10_S190

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+, NeuN+

tag: plate type

value: TRN Neun+


title: OTTA2014_2647_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes


title: OTTA2014_2646_Clinical

description: single-sample normalized data

tag: race/ethnicity

value: white

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: HAW


title: TRN2205

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_H6_S186


title: TRN2194

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_G7_S175


title: TRN2192

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_G5_S173


title: TRN2193

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_G6_S174


title: OTTA2014_2644_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: dead

tag: progression-free survival time

tag: anatomical site

tag: experiment site

value: USC


title: TRN2191

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_G4_S172

value: sNuc-seq


title: OTTA2014_2645_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: OTTA2014_2643_Clinical

description: single-sample normalized data


title: TRN2189

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_G2_S170

tag: sample type

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: OTTA2014_2640_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: other


title: OTTA2014_2652_Clinical

description: single-sample normalized data

value: high

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: presumed adnexal

value: MAY


title: TRN2198

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_H11_S191


title: TRN2190

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_G3_S171


title: OTTA2014_2639_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: unknown

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2641_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2188

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_G1_S169

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2186

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: OTTA2014_2638_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: alive


title: TRN2187

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_G12_S180


title: TRN2185

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_G10_S178


title: OTTA2014_2636_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2635_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2196

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_G9_S177


title: TRN2184

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_F9_S165


title: TRN2195

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_G8_S176


title: OTTA2014_2642_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: OTTA2014_2634_Clinical

description: single-sample normalized data


title: TRN2183

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_F8_S164

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2181

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_F6_S162


title: OTTA2014_2633_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2632_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2631_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2179

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_F4_S160


title: OTTA2014_2629_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2177

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_F2_S158

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2178

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_F3_S159


title: TRN2176

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_F1_S157


title: OTTA2014_2628_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: hispanic


title: OTTA2014_2627_Clinical

description: single-sample normalized data

value: any

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2630_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2174

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_F11_S167

value: Violet+, NeuN+

value: TRN Neun+


title: OTTA2014_2637_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2175

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_F12_S168

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2625_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

value: low

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2624_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: HAW


title: TRN2173

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_F10_S166


title: OTTA2014_2623_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: dead

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2622_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

value: USC

tag: site id


title: TRN2182

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_F7_S163

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2172

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_E9_S153

value: No


title: TRN2168

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_E5_S149


title: TRN2169

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_E6_S150


title: TRN2180

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_F5_S161


title: TRN2171

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_E8_S152


title: TRN2170

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_E7_S151


title: TRN2167

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_E4_S148


title: OTTA2014_2619_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2165

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_E2_S146


title: TRN2164

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_E1_S145


title: OTTA2014_2617_Clinical

description: single-sample normalized data

tag: race/ethnicity

value: white

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2620_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: high

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2621_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

value: presumed adnexal

tag: site id


title: OTTA2014_2618_Clinical

description: single-sample normalized data


title: OTTA2014_2615_Clinical

description: single-sample normalized data


title: OTTA2014_2613_Clinical

description: single-sample normalized data


title: OTTA2014_2616_Clinical

description: single-sample normalized data


title: OTTA2014_2614_Clinical

description: single-sample normalized data


title: TRN2162

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_E11_S155

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2161

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_E10_S154


title: OTTA2014_2612_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2610_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2626_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2160

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_D9_S141


title: TRN2159

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_D8_S140


title: OTTA2014_2609_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2166

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_E3_S147

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2157

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_D6_S138


title: TRN2158

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_D7_S139


title: TRN2163

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_E12_S156


title: OTTA2014_2608_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2607_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: TRN2154

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_D3_S135


title: TRN2155

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_D4_S136


title: TRN2153

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: OTTA2014_2605_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2606_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2151

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_D12_S144

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2603_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2149

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_D10_S142


title: OTTA2014_2602_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2604_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2148

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_C9_S129


title: TRN2150

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_D11_S143


title: OTTA2014_2600_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: OTTA2014_2598_Clinical

description: single-sample normalized data


title: OTTA2014_2601_Clinical

description: single-sample normalized data


title: TRN2152

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_D1_S133

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2611_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2147

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_C8_S128


title: OTTA2014_2599_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: TRN2146

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_C7_S127


title: OTTA2014_2596_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2156

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_D5_S137


title: OTTA2014_2597_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2145

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_C6_S126

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2144

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_C5_S125


title: OTTA2014_2595_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2143

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_C4_S124


title: OTTA2014_2594_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2593_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2140

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_C1_S121


title: TRN2139

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_C12_S132


title: TRN2141

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_C2_S122


title: TRN2142

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_C3_S123


title: OTTA2014_2591_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2138

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_C11_S131

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2135

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_B8_S116


title: OTTA2014_2589_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2137

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_C10_S130


title: TRN2134

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_B7_S115


title: OTTA2014_2590_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2588_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2587_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2136

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_B9_S117

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2131

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_B4_S112


title: OTTA2014_2584_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2132

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_B5_S113


title: OTTA2014_2585_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: TRN2133

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_B6_S114


title: OTTA2014_2581_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: all wildtypes

tag: progression-free survival time

tag: anatomical site

value: adnexal

tag: experiment site

value: WMH


title: OTTA2014_2592_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: hispanic

tag: study entry delay

tag: site id


title: OTTA2014_2586_Clinical

description: single-sample normalized data


title: TRN2130

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_B3_S111

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2582_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status

value: alive


title: TRN2129

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_B2_S110

value: Violet+, NeuN+

value: TRN Neun+


title: OTTA2014_2583_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: HAW


title: OTTA2014_2579_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: unknown

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2580_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

value: USC

tag: site id


title: TRN2127

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_B12_S120

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2128

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_B1_S109

value: No


title: OTTA2014_2578_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2126

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_B11_S119


title: TRN2125

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_B10_S118


title: OTTA2014_2576_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time


title: TRN2123

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_A8_S104


title: TRN2124

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_A9_S105


title: OTTA2014_2575_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: high

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2577_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: white

tag: study entry delay

value: omentum

tag: site id


title: TRN2122

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_A7_S103

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2121

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_A6_S102


title: OTTA2014_2572_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: adnexal


title: TRN2119

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_A4_S100


title: OTTA2014_2571_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: WMH


title: TRN2120

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_A5_S101


title: TRN2118

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_A3_S99


title: TRN2117

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_A2_S98


title: OTTA2014_2570_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2567_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: OTTA2014_2568_Clinical

description: single-sample normalized data


title: TRN2114

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_A11_S107

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2115

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_A12_S108


title: TRN2116

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_A1_S97


title: OTTA2014_2564_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2112

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_H9_S93


title: OTTA2014_2565_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2574_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2113

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpB_A10_S106


title: TRN2111

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_H8_S92


title: OTTA2014_2563_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: OTTA2014_2573_Clinical

description: single-sample normalized data


title: OTTA2014_2561_Clinical

description: single-sample normalized data


title: TRN2110

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_H7_S91

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2560_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2109

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_H6_S90


title: OTTA2014_2562_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2558_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2108

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_H5_S89


title: OTTA2014_2569_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

value: peritoneal

tag: site id


title: TRN2107

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_H4_S88

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2566_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2557_Clinical

description: single-sample normalized data

value: any

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: TRN2104

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_H1_S85


title: OTTA2014_2556_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2106

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_H3_S87


title: OTTA2014_2555_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: low

tag: study entry delay

tag: site id


title: OTTA2014_2554_Clinical

description: single-sample normalized data


title: OTTA2014_2553_Clinical

description: single-sample normalized data


title: TRN2102

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_H11_S95

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+, NeuN+

tag: plate type


title: TRN2103

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_H12_S96

value: TRN Neun+


title: TRN2100

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_G9_S81


title: TRN2098

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_G7_S79


title: OTTA2014_2552_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: alive


title: TRN2099

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_G8_S80


title: OTTA2014_2559_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: TRN2096

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_G5_S77


title: OTTA2014_2550_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2547_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2097

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_G6_S78

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2094

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_G3_S75


title: TRN2105

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_H2_S86


title: TRN2095

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_G4_S76


title: OTTA2014_2544_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2546_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2545_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2091

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_G12_S84


title: TRN2092

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_G1_S73


title: TRN2093

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_G2_S74


title: OTTA2014_2543_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2090

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_G11_S83

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2089

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_G10_S82


title: TRN2101

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_H10_S94


title: OTTA2014_2541_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2538_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2548_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2551_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: OTTA2014_2540_Clinical

description: single-sample normalized data

value: unknown


title: TRN2088

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_F9_S69

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2087

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_F8_S68


title: TRN2086

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_F7_S67


title: OTTA2014_2537_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: USC


title: TRN2085

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_F6_S66

value: sNuc-seq


title: TRN2084

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_F5_S65

value: No


title: TRN2083

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_F4_S64


title: OTTA2014_2549_Clinical

description: single-sample normalized data

value: HGSOC

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2542_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2536_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: dead

tag: study entry delay

tag: site id


title: TRN2082

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_F3_S63

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2533_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2532_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2535_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2534_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2080

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_F1_S61

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2531_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2079

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_F12_S72


title: OTTA2014_2530_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2539_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2529_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

value: pathogenic BRCA1 mutation

tag: study entry delay

tag: site id


title: TRN2078

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_F11_S71

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2528_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2075

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_E8_S56


title: TRN2076

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: OTTA2014_2527_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2525_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2074

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_E7_S55


title: OTTA2014_2526_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: OTTA2014_2524_Clinical

description: single-sample normalized data

value: all wildtypes


title: TRN2073

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_E6_S54

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2081

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_F2_S62


title: TRN2072

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_E5_S53


title: OTTA2014_2523_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: adnexal


title: TRN2070

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_E3_S51


title: OTTA2014_2521_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: WMH


title: TRN2069

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_E2_S50


title: OTTA2014_2522_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2071

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_E4_S52


title: TRN2067

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_E12_S60


title: OTTA2014_2519_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2077

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_F10_S70

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2065

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_E10_S58


title: OTTA2014_2517_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2068

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_E1_S49


title: OTTA2014_2516_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: peritoneal


title: OTTA2014_2518_Clinical

description: single-sample normalized data

tag: sample region cellularity

value: any

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: OTTA2014_2515_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2063

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_D8_S44

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2064

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_D9_S45


title: TRN2062

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_D7_S43


title: OTTA2014_2512_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: pathogenic BRCA2 mutation


title: OTTA2014_2514_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: TRN2061

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_D6_S42

value: Violet+, NeuN+


title: OTTA2014_2511_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site


title: TRN2060

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_D5_S41

value: TRN Neun+


title: TRN2059

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_D4_S40


title: OTTA2014_2520_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

tag: site id


title: TRN2058

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_D3_S39

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2509_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2066

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_E11_S59


title: TRN2056

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_D1_S37


title: TRN2057

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_D2_S38


title: OTTA2014_2508_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time

value: omentum


title: OTTA2014_2507_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: progression-free survival time

tag: anatomical site

tag: experiment site

value: AOC


title: TRN2055

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_D12_S48


title: TRN2053

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_D10_S46


title: OTTA2014_2505_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region necrosis

tag: study entry delay

value: USC

tag: site id


title: TRN2054

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_D11_S47

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type