title: OTTA2014_0837_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0835_Clinical

status: Public on Jul 22 2020

type: RNA

city: Vancouver

first: Michael

middle: S

last: Anglesio

state: BC

department: Obstetrics and Gynecology

country: Canada

institute: University of British Columbia

description: single-sample normalized data

hyb_protocol: NanoString Gene Expression protocol using 500ng of Total RNA as measured by NanoDrop spectrophotmeter. RNA is combined with capture and reporter codesets, and hybridization buffer. Reaction mixtures are hybridized in a thermal cycler at 65C for either short (16H) or long (20H) hybridization. Samples are then washed and fixed to cartridges using the nCounter Prep Station (high-sensitivity mode) for imaging.

scan_protocol: imaging on nCounter Digital Analyzer at maximum FOV

data_processing: Samples data is processed and normalized following protocols described in Talhouk et al (PMID: 27096160) using PrOTYPE. Briefly: Count data is Log2 transformed, the mean of housekeeping genes (ACTB, RPL19, SDHA, POLR1B, and PGK1) subtracted on a per-sample basis, and then normalized relative to reference samples (denoted as Pool1, Pool2, and Pool3). Code available at https://github.com/AlineTalhouk/PrOType

molecule: total RNA

organism: Homo sapiens

source_name: primary high-grade serous tubo-ovarian carcinoma

label_protocol: NanoString probe-specific unique barcode

extract_protocol: Total RNA extracted with the Qiagen miRNeasy FFPE kit (modified protocol)

value: HGSOC

tag: Stage

value: high

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: white

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

value: VAN

tag: site id

value: DOV


title: OTTA2014_0836_Clinical

description: single-sample normalized data

value: low


title: TRN487

type: SRA

city: Cambridge

first: Joshua

last: Levin

state: MA

address: 75 Ames St

department: Stanley Center

country: USA

institute: Broad Institute

description:
nuclear RNA
TPM.TRN.tsv
no processed data

library_source: transcriptomic

data_processing:
RSEM v1.2.87 was run on raw fastq fileswith default parameters on alignments created by Bowtie on UCSC gene annotation
TPM estimates were tranformed to log space by taking log TPM +1
TopHat2 v2.0.10 was used to map fastq files to mm10 reference
RNASeq-QC was run on the TopHat2 bamfiles to get QC metrics
For TRN and patch-seq samples, cells were removed if they had less than 40% genome mapping rate or or less than 1500 detected genes
Clustering and DE analysis of TRN samples was perfomed with biSNE software (https://github.com/yinqingl/nucseq_analysis), including normalizing the log TPM data to a normalized log TPM
For non-TRN samples, nuclei expressing <1500 genes were removed
Seurat v2.2.0 was used for clustering of the non-TRN samples
Genome_build: mm10
Supplementary_files_format_and_content: Formatted expression matrix (tab deliminated text file) with cells as columns, genes as rows, and TPM values as entries

organism: Mus musculus

source_name: TRN

extract_protocol:
Sucrose gradient nuclei isolation followed by FACS sorting for Violet+, Violet+ GFP+ or Violet+ NeuN+ nuclei
Modified SMARTseq2 single nuclei RNA-Seq

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+

tag: plate type

value: TRN adjacent


title: TRN486

description:
nuclear RNA
TPM.TRN.tsv
X012116_ThrP26_A3_S291


title: OTTA2014_0831_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0833_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: alive


title: OTTA2014_0830_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0834_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0829_Clinical

description: single-sample normalized data


title: TRN484

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN483


title: OTTA2014_0825_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0824_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN485


title: OTTA2014_0826_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0822_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN482

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0821_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0859_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0823_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0820_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN488

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN480

value: TRN no Neun selection


title: TRN481


title: OTTA2014_0827_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0819_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0818_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0828_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0832_Clinical

description: single-sample normalized data


title: TRN478

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0816_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0815_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0813_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0814_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN477

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_H6_S186

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0811_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: hispanic


title: OTTA2014_0812_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0809_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN474


title: TRN475

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_H4_S184


title: OTTA2014_0805_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0806_Clinical

description: single-sample normalized data


title: TRN472

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_H1_S181

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0807_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN479


title: OTTA2014_0817_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0801_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0808_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0799_Clinical

description: single-sample normalized data


title: TRN471

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0802_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN473


title: OTTA2014_0798_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0803_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN470


title: OTTA2014_0797_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0800_Clinical

description: single-sample normalized data


title: OTTA2014_0795_Clinical

description: single-sample normalized data


title: TRN476

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0796_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0794_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: other


title: TRN468


title: OTTA2014_0810_Clinical

description: single-sample normalized data

value: HGSOC

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0793_Clinical

description: single-sample normalized data

value: high

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0792_Clinical

description: single-sample normalized data

value: unknown


title: TRN467

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0791_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: white


title: OTTA2014_0804_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: dead


title: TRN465

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_G6_S174


title: OTTA2014_0790_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: adnexal


title: OTTA2014_0788_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

value: VAN

tag: site id


title: OTTA2014_0789_Clinical

description: single-sample normalized data

value: DOV


title: TRN463

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_G4_S172

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN462


title: OTTA2014_0787_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0785_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0782_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0783_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0786_Clinical

description: single-sample normalized data


title: TRN469

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0781_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0780_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN461

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_G2_S170


title: OTTA2014_0778_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0776_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0779_Clinical

description: single-sample normalized data


title: TRN458

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN459


title: OTTA2014_0774_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN466

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_G7_S175


title: TRN464

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_G5_S173


title: TRN457


title: OTTA2014_0773_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0771_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0772_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0777_Clinical

description: single-sample normalized data


title: OTTA2014_0770_Clinical

description: single-sample normalized data


title: OTTA2014_0784_Clinical

description: single-sample normalized data

value: low


title: TRN456

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN455

value: No


title: OTTA2014_0768_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0769_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0767_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN454

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_F7_S163

value: Violet+


title: OTTA2014_0766_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0765_Clinical

description: single-sample normalized data


title: OTTA2014_0763_Clinical

description: single-sample normalized data


title: TRN453

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_F6_S162

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN460

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_G1_S169


title: OTTA2014_0764_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN452

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_F5_S161


title: OTTA2014_0762_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0760_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN451

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_F4_S160


title: TRN450

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_F3_S159


title: OTTA2014_0759_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN449

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_F2_S158

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0758_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0756_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0755_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0753_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0754_Clinical

description: single-sample normalized data


title: TRN447

description:
nuclear RNA
TPM.TRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN446


title: TRN448


title: OTTA2014_0750_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0751_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0761_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0749_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN444

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_E9_S153

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0747_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0744_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN443

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_E8_S152


title: TRN445


title: OTTA2014_0745_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0743_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0746_Clinical

description: single-sample normalized data


title: TRN442

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_E7_S151

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0757_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0741_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN441

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_E6_S150


title: OTTA2014_0775_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0740_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0752_Clinical

description: single-sample normalized data


title: OTTA2014_0739_Clinical

description: single-sample normalized data


title: TRN440

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_E5_S149

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN439

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_E4_S148


title: OTTA2014_0748_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0737_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0735_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0734_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0733_Clinical

description: single-sample normalized data


title: TRN437

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0738_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN438


title: OTTA2014_0732_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0730_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN436


title: OTTA2014_0731_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0729_Clinical

description: single-sample normalized data


title: TRN435

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_E12_S156

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0742_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0727_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0728_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0726_Clinical

description: single-sample normalized data

value: any

tag: study entry delay

tag: anatomical site

value: presumed adnexal

tag: experiment site

value: USC

tag: site id

value: CNI


title: TRN433

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_E10_S154

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type

value: TRN no Neun selection


title: TRN434

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_E11_S155


title: OTTA2014_0724_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: hispanic

value: alive


title: TRN432

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_D9_S141


title: OTTA2014_0723_Clinical

description: single-sample normalized data

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0721_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN431


title: OTTA2014_0719_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN430

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_D7_S139

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN429

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_D6_S138


title: OTTA2014_0718_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: dead


title: OTTA2014_0717_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0722_Clinical

description: single-sample normalized data

value: unknown

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0736_Clinical

description: single-sample normalized data

value: white

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

value: VAN

tag: site id


title: OTTA2014_0716_Clinical

description: single-sample normalized data


title: OTTA2014_0720_Clinical

description: single-sample normalized data


title: TRN428

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0715_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0725_Clinical

description: single-sample normalized data

tag: Stage

value: low

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0714_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN426

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_D3_S135

value: No

value: Violet+


title: TRN427


title: OTTA2014_0713_Clinical

description: single-sample normalized data

value: any

tag: study entry delay

tag: anatomical site

value: presumed adnexal

tag: experiment site

tag: site id


title: OTTA2014_0711_Clinical

description: single-sample normalized data

value: USC

value: CNI


title: OTTA2014_0712_Clinical

description: single-sample normalized data

value: HGSOC


title: TRN425

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_D2_S134

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type

value: TRN no Neun selection


title: OTTA2014_0709_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: hispanic

value: alive


title: OTTA2014_0710_Clinical

description: single-sample normalized data

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0707_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0708_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN424

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_D1_S133

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN423

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_D12_S144


title: OTTA2014_0703_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0704_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0705_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN422

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_D11_S143


title: OTTA2014_0702_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN421

description:
nuclear RNA
TPM.TRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN420

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_C9_S129


title: TRN419

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_C8_S128


title: TRN418

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_C7_S127


title: OTTA2014_0701_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: unknown


title: TRN417


title: OTTA2014_0700_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0696_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0694_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0695_Clinical

description: single-sample normalized data


title: OTTA2014_0699_Clinical

description: single-sample normalized data


title: OTTA2014_0697_Clinical

description: single-sample normalized data


title: OTTA2014_0698_Clinical

description: single-sample normalized data


title: TRN416

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_C5_S125

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0693_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0706_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN415


title: OTTA2014_0690_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0692_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0689_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation


title: OTTA2014_0691_Clinical

description: single-sample normalized data


title: OTTA2014_0688_Clinical

description: single-sample normalized data


title: OTTA2014_0687_Clinical

description: single-sample normalized data


title: OTTA2014_0686_Clinical

description: single-sample normalized data

value: pathogenic BRCA2 mutation


title: OTTA2014_0685_Clinical

description: single-sample normalized data


title: TRN413

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_C2_S122

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0683_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: all wildtypes


title: OTTA2014_0684_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN412

value: No


title: TRN411

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_C12_S132

value: Violet+


title: OTTA2014_0682_Clinical

description: single-sample normalized data

value: any

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0681_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: presumed adnexal

tag: experiment site

tag: site id


title: TRN408

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0680_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: low

value: USC


title: OTTA2014_0677_Clinical

description: single-sample normalized data

value: HGSOC

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: CNI


title: TRN409

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_C10_S130

value: TRN no Neun selection


title: OTTA2014_0674_Clinical

description: single-sample normalized data

value: hispanic

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN410

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_C11_S131


title: OTTA2014_0673_Clinical

description: single-sample normalized data

value: high

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0678_Clinical

description: single-sample normalized data

value: alive


title: OTTA2014_0675_Clinical

description: single-sample normalized data

value: unknown


title: OTTA2014_0679_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation


title: TRN406

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_B7_S115

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN414

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_C3_S123


title: OTTA2014_0672_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: pathogenic BRCA2 mutation


title: OTTA2014_0676_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: dead


title: OTTA2014_0667_Clinical

description: single-sample normalized data

value: all wildtypes

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0670_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0671_Clinical

description: single-sample normalized data


title: OTTA2014_0669_Clinical

description: single-sample normalized data


title: TRN407

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_B8_S116

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: OTTA2014_0668_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: any


title: TRN404

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_B5_S113

value: Violet+


title: OTTA2014_0666_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: presumed adnexal


title: OTTA2014_0665_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: USC


title: OTTA2014_0663_Clinical

description: single-sample normalized data

value: HGSOC

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0662_Clinical

description: single-sample normalized data

value: low

value: CNI


title: TRN402

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_B3_S111

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type

value: TRN no Neun selection


title: OTTA2014_0661_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: high

value: hispanic


title: TRN400


title: TRN401


title: OTTA2014_0659_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0657_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation

tag: year of diagnosis

tag: vital status

value: alive

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0658_Clinical

description: single-sample normalized data

value: dead

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0660_Clinical

description: single-sample normalized data


title: TRN405

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN396

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_A9_S105


title: TRN399

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_B12_S120


title: TRN398

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_B11_S119


title: OTTA2014_0653_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: white

value: adnexal

value: AOV


title: OTTA2014_0655_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes

tag: race/ethnicity


title: OTTA2014_0656_Clinical

description: single-sample normalized data

value: any

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0652_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: presumed adnexal

tag: experiment site

tag: site id


title: OTTA2014_0654_Clinical

description: single-sample normalized data

value: USC


title: OTTA2014_0664_Clinical

description: single-sample normalized data

value: HGSOC


title: OTTA2014_0650_Clinical

description: single-sample normalized data


title: TRN395

description:
nuclear RNA
TPM.TRN.tsv
no processed data

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+

tag: plate type


title: TRN403

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_B4_S112

value: TRN no Neun selection


title: OTTA2014_0651_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: low

value: hispanic


title: OTTA2014_0647_Clinical

description: single-sample normalized data

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN394


title: OTTA2014_0646_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0649_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0645_Clinical

description: single-sample normalized data


title: TRN397

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0648_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: alive


title: OTTA2014_0644_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: dead


title: OTTA2014_0642_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN390

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_A3_S99


title: TRN389

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_A2_S98


title: OTTA2014_0641_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0643_Clinical

description: single-sample normalized data


title: OTTA2014_0640_Clinical

description: single-sample normalized data

value: unknown


title: TRN392

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN387

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_A12_S108


title: TRN388

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_A1_S97


title: OTTA2014_0638_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: adnexal


title: OTTA2014_0636_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: AOV


title: OTTA2014_0635_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: omentum


title: OTTA2014_0639_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0630_Clinical

description: single-sample normalized data

value: white


title: OTTA2014_0631_Clinical

description: single-sample normalized data


title: TRN391

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_A4_S100

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN393

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_A6_S102


title: OTTA2014_0633_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: any

value: presumed adnexal


title: OTTA2014_0628_Clinical

description: single-sample normalized data

value: HGSOC

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: USC


title: OTTA2014_0627_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0632_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0629_Clinical

description: single-sample normalized data


title: OTTA2014_0626_Clinical

description: single-sample normalized data


title: OTTA2014_0625_Clinical

description: single-sample normalized data


title: TRN384

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: OTTA2014_0634_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0637_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN383

value: Violet+

value: TRN no Neun selection


title: OTTA2014_0624_Clinical

description: single-sample normalized data

value: hispanic

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0623_Clinical

description: single-sample normalized data

value: low

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN382

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_H7_S91

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN381


title: TRN386

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_A11_S107


title: OTTA2014_0622_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: high

value: alive


title: OTTA2014_0619_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0620_Clinical

description: single-sample normalized data

value: unknown

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN380

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_H5_S89


title: TRN378


title: OTTA2014_0617_Clinical

description: single-sample normalized data

value: dead

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0616_Clinical

description: single-sample normalized data

value: adnexal

value: AOV


title: OTTA2014_0611_Clinical

description: single-sample normalized data

value: white


title: OTTA2014_0610_Clinical

description: single-sample normalized data


title: TRN376

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_H1_S85

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0615_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: peritoneal


title: TRN379

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_H4_S88


title: TRN375


title: OTTA2014_0613_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: presumed adnexal


title: OTTA2014_0609_Clinical

description: single-sample normalized data

value: HGSOC

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: USC


title: OTTA2014_0608_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0618_Clinical

description: single-sample normalized data

value: omentum


title: TRN377

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_H2_S86

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+

tag: plate type


title: OTTA2014_0607_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0606_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0621_Clinical

description: single-sample normalized data

value: low

value: hispanic

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0605_Clinical

description: single-sample normalized data

value: high

value: alive

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN372

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type

value: TRN no Neun selection


title: OTTA2014_0614_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0603_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: adnexal


title: TRN371

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_G8_S80


title: OTTA2014_0601_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: AOV


title: OTTA2014_0602_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0599_Clinical

description: single-sample normalized data

value: white


title: OTTA2014_0600_Clinical

description: single-sample normalized data

value: dead


title: OTTA2014_0598_Clinical

description: single-sample normalized data

value: any


title: TRN370

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_G7_S79

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0596_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0595_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN374

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_H11_S95


title: TRN369

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_G6_S78


title: OTTA2014_0594_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: presumed adnexal


title: TRN367

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: TRN368

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_G5_S77


title: TRN373

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_H10_S94


title: OTTA2014_0604_Clinical

description: single-sample normalized data

value: HGSOC

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0593_Clinical

description: single-sample normalized data

value: USC


title: OTTA2014_0590_Clinical

description: single-sample normalized data


title: OTTA2014_0592_Clinical

description: single-sample normalized data


title: OTTA2014_0591_Clinical

description: single-sample normalized data


title: TRN366

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_G3_S75

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN363


title: OTTA2014_0587_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN364

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_G1_S73


title: OTTA2014_0589_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: omentum


title: OTTA2014_0586_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0588_Clinical

description: single-sample normalized data

value: unknown

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0584_Clinical

description: single-sample normalized data


title: OTTA2014_0585_Clinical

description: single-sample normalized data


title: OTTA2014_0582_Clinical

description: single-sample normalized data

value: AOC


title: OTTA2014_0583_Clinical

description: single-sample normalized data


title: TRN362

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_G11_S83

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+

tag: plate type


title: OTTA2014_0581_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: high


title: OTTA2014_0597_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: alive


title: TRN361

value: TRN no Neun selection


title: TRN359

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_F8_S68


title: TRN365

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_G2_S74


title: OTTA2014_0577_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN358

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_F7_S67


title: OTTA2014_0574_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

tag: site id


title: TRN357

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_F6_S66

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0580_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: all wildtypes


title: OTTA2014_0578_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: hispanic


title: TRN356

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_F5_S65


title: OTTA2014_0572_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0573_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0571_Clinical

description: single-sample normalized data


title: OTTA2014_0575_Clinical

description: single-sample normalized data


title: OTTA2014_0568_Clinical

description: single-sample normalized data


title: OTTA2014_0569_Clinical

description: single-sample normalized data


title: TRN354

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_F3_S63

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0567_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN360

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_F9_S69


title: OTTA2014_0565_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0564_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0579_Clinical

description: single-sample normalized data

value: white

value: dead

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN353

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_F2_S62

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0576_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: any


title: OTTA2014_0563_Clinical

description: single-sample normalized data

value: HGSOC

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0562_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN352

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_F1_S61


title: OTTA2014_0561_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0570_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation


title: TRN355

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN350


title: TRN351


title: OTTA2014_0560_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: low


title: TRN348

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_E9_S57


title: OTTA2014_0559_Clinical

description: single-sample normalized data

tag: Stage

value: unknown

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN349

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_F10_S70


title: OTTA2014_0566_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: omentum

value: AOC


title: OTTA2014_0557_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN347

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_E8_S56

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: OTTA2014_0554_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: high


title: OTTA2014_0553_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: alive


title: OTTA2014_0558_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0556_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0555_Clinical

description: single-sample normalized data


title: OTTA2014_0549_Clinical

description: single-sample normalized data


title: OTTA2014_0551_Clinical

description: single-sample normalized data


title: OTTA2014_0552_Clinical

description: single-sample normalized data


title: TRN345

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_E6_S54

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+

tag: plate type

value: TRN no Neun selection


title: OTTA2014_0550_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0548_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: adnexal


title: OTTA2014_0547_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: upper genital track


title: OTTA2014_0546_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN344

description:
nuclear RNA
TPM.TRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN343


title: OTTA2014_0545_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: presumed adnexal


title: TRN346

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_E7_S55


title: TRN342

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_E3_S51


title: OTTA2014_0543_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: pathogenic BRCA2 mutation

tag: race/ethnicity

value: peritoneal


title: OTTA2014_0542_Clinical

description: single-sample normalized data

value: HGSOC

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0544_Clinical

description: single-sample normalized data

value: any

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN340

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_E1_S49

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0541_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: unknown


title: TRN338

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_E11_S59


title: OTTA2014_0538_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: omentum


title: OTTA2014_0612_Clinical

description: single-sample normalized data

value: white

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: USC

value: AOV


title: TRN337

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_E10_S58

value: sNuc-seq

value: No


title: OTTA2014_0539_Clinical

description: single-sample normalized data

value: high

tag: study entry delay

tag: anatomical site

tag: experiment site

value: AOC

tag: site id


title: TRN339

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_E12_S60

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+

tag: plate type

value: TRN no Neun selection


title: OTTA2014_0534_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: alive

value: adnexal


title: OTTA2014_0535_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0537_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0532_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0533_Clinical

description: single-sample normalized data


title: TRN336

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_D9_S45

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0530_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: all wildtypes


title: OTTA2014_0531_Clinical

description: single-sample normalized data

value: HGSOC

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0529_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time


title: TRN385

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp5_A10_S106


title: TRN341

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_E2_S50


title: TRN335


title: OTTA2014_0528_Clinical

description: single-sample normalized data

value: any

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0527_Clinical

description: single-sample normalized data

value: unknown


title: OTTA2014_0540_Clinical

description: single-sample normalized data

value: omentum


title: TRN334

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0536_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN333


title: OTTA2014_0526_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0525_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: peritoneal


title: OTTA2014_0524_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN331

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_D4_S40

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0521_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: low


title: TRN330

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_D3_S39

value: sNuc-seq


title: OTTA2014_0518_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0519_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN329

value: No


title: OTTA2014_0522_Clinical

description: single-sample normalized data

value: high

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0517_Clinical

description: single-sample normalized data

value: AOC


title: OTTA2014_0520_Clinical

description: single-sample normalized data


title: OTTA2014_0515_Clinical

description: single-sample normalized data


title: OTTA2014_0516_Clinical

description: single-sample normalized data


title: OTTA2014_0514_Clinical

description: single-sample normalized data


title: OTTA2014_0513_Clinical

description: single-sample normalized data


title: OTTA2014_0512_Clinical

description: single-sample normalized data


title: TRN327

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_D12_S48

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+

tag: plate type


title: TRN326

value: TRN no Neun selection


title: OTTA2014_0510_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0509_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN325

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_D10_S46


title: TRN332

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_D5_S41


title: OTTA2014_0508_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: presumed adnexal


title: OTTA2014_0511_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0523_Clinical

description: single-sample normalized data

value: pathogenic BRCA2 mutation

value: adnexal


title: OTTA2014_0507_Clinical

description: single-sample normalized data

value: HGSOC

value: all wildtypes


title: TRN324

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_C9_S33

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0505_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: white

value: dead


title: OTTA2014_0504_Clinical

description: single-sample normalized data

tag: Stage

value: unknown

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: hispanic


title: OTTA2014_0503_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: peritoneal


title: TRN323

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_C8_S32

value: sNuc-seq


title: OTTA2014_0506_Clinical

description: single-sample normalized data

value: low

value: alive

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0502_Clinical

description: single-sample normalized data

value: high

value: AOC


title: OTTA2014_0501_Clinical

description: single-sample normalized data


title: TRN328

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_D1_S37

tag: sample type

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+

tag: plate type

value: TRN no Neun selection


title: TRN321

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: TRN320


title: TRN319

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_C4_S28


title: OTTA2014_0497_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: adnexal


title: OTTA2014_0498_Clinical

description: single-sample normalized data

value: HGSOC

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: presumed adnexal


title: OTTA2014_0499_Clinical

description: single-sample normalized data

value: pathogenic BRCA2 mutation

value: white

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0496_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN318

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_C3_S27

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0495_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: pathogenic BRCA1 mutation

value: omentum


title: OTTA2014_0493_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: dead


title: OTTA2014_0494_Clinical

description: single-sample normalized data

value: all wildtypes

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN317

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_C2_S26

value: sNuc-seq


title: OTTA2014_0491_Clinical

description: single-sample normalized data

value: low

value: unknown

value: alive

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0492_Clinical

description: single-sample normalized data

value: high

value: AOC


title: TRN316

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_C1_S25

tag: sample type

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+

tag: plate type

value: TRN no Neun selection


title: OTTA2014_0490_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0489_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: presumed adnexal


title: OTTA2014_0487_Clinical

description: single-sample normalized data

value: white

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: adnexal


title: OTTA2014_0488_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN315

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_C12_S36

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN322


title: TRN314

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_C11_S35


title: OTTA2014_0485_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: hispanic


title: TRN312

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_B9_S21


title: OTTA2014_0500_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0486_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time


title: TRN313

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_C10_S34


title: OTTA2014_0484_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0481_Clinical

description: single-sample normalized data

value: all wildtypes


title: TRN311

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_B8_S20

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0480_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: omentum


title: TRN310

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_B7_S19


title: OTTA2014_0483_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN309

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_B6_S18


title: OTTA2014_0479_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0482_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0477_Clinical

description: single-sample normalized data


title: TRN308

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_B5_S17

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0474_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0473_Clinical

description: single-sample normalized data

tag: Stage

value: low

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0475_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN307

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_B4_S16


title: OTTA2014_0476_Clinical

description: single-sample normalized data

value: pathogenic BRCA2 mutation

value: alive

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0472_Clinical

description: single-sample normalized data

value: high

value: AOC


title: OTTA2014_0470_Clinical

description: single-sample normalized data


title: TRN306

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_B3_S15

tag: sample type

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+

tag: plate type


title: OTTA2014_0469_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0471_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: pathogenic BRCA1 mutation

tag: race/ethnicity


title: OTTA2014_0467_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN305

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_B2_S14

value: TRN no Neun selection


title: OTTA2014_0468_Clinical

description: single-sample normalized data

value: white

tag: study entry delay

tag: anatomical site

value: presumed adnexal

tag: experiment site

tag: site id


title: TRN304

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_B1_S13

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0466_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: any


title: OTTA2014_0465_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: dead

value: adnexal


title: TRN303

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_B12_S24

value: sNuc-seq


title: OTTA2014_0478_Clinical

description: single-sample normalized data

value: all wildtypes

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN302

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_B11_S23


title: TRN301

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_B10_S22


title: OTTA2014_0464_Clinical

description: single-sample normalized data

value: hispanic

tag: study entry delay

tag: anatomical site

value: omentum

tag: experiment site

tag: site id


title: OTTA2014_0460_Clinical

description: single-sample normalized data


title: OTTA2014_0461_Clinical

description: single-sample normalized data


title: OTTA2014_0462_Clinical

description: single-sample normalized data


title: OTTA2014_0463_Clinical

description: single-sample normalized data


title: OTTA2014_0459_Clinical

description: single-sample normalized data


title: TRN300

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_A9_S9

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0458_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0457_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0456_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: alive

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0455_Clinical

description: single-sample normalized data

value: high

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0453_Clinical

description: single-sample normalized data

value: unknown

value: AOC


title: OTTA2014_0454_Clinical

description: single-sample normalized data


title: OTTA2014_0452_Clinical

description: single-sample normalized data


title: OTTA2014_0451_Clinical

description: single-sample normalized data


title: TRN296

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_A5_S5

tag: sample type

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+

tag: plate type


title: TRN297

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_A6_S6


title: OTTA2014_0450_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0448_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN295

description:
nuclear RNA
TPM.TRN.tsv
no processed data

value: TRN no Neun selection


title: TRN294

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_A3_S3


title: OTTA2014_0449_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: peritoneal


title: TRN293

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_A2_S2


title: TRN299


title: TRN291

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_A12_S12


title: TRN292

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_A1_S1


title: OTTA2014_0446_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0444_Clinical

description: single-sample normalized data


title: OTTA2014_0445_Clinical

description: single-sample normalized data


title: OTTA2014_0442_Clinical

description: single-sample normalized data


title: OTTA2014_0441_Clinical

description: single-sample normalized data

value: white

value: presumed adnexal


title: TRN298

description:
nuclear RNA
TPM.TRN.tsv
X012116_TRNp4_A7_S7

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0440_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: any

value: dead


title: OTTA2014_0438_Clinical

description: single-sample normalized data

tag: Stage

value: low

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: adnexal


title: OTTA2014_0439_Clinical

description: single-sample normalized data

value: hispanic

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN289

value: sNuc-seq


title: OTTA2014_0436_Clinical

description: single-sample normalized data

value: all wildtypes

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0437_Clinical

description: single-sample normalized data

value: high

value: omentum


title: OTTA2014_0447_Clinical

description: single-sample normalized data

value: AOC


title: OTTA2014_0433_Clinical

description: single-sample normalized data


title: TRN287

tag: sample type

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type

value: TRN adjacent


title: TRN288

value: Violet+


title: OTTA2014_0431_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0443_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN290

value: TRN no Neun selection


title: OTTA2014_0432_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN286


title: OTTA2014_0429_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0430_Clinical

description: single-sample normalized data

value: white


title: TRN285

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0428_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: peritoneal


title: TRN284


title: OTTA2014_0425_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN283


title: OTTA2014_0427_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0435_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

tag: site id


title: OTTA2014_0426_Clinical

description: single-sample normalized data

value: hispanic


title: OTTA2014_0423_Clinical

description: single-sample normalized data

value: low


title: OTTA2014_0434_Clinical

description: single-sample normalized data

value: all wildtypes


title: OTTA2014_0424_Clinical

description: single-sample normalized data

value: high

value: pathogenic BRCA2 mutation


title: OTTA2014_0422_Clinical

description: single-sample normalized data

value: AOC


title: TRN281

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: TRN282

value: Violet+

value: TRN adjacent


title: OTTA2014_0421_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: omentum


title: OTTA2014_0418_Clinical

description: single-sample normalized data

tag: Stage

value: unknown

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: white

value: alive


title: TRN280


title: OTTA2014_0417_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: peritoneal


title: TRN279


title: OTTA2014_0415_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0416_Clinical

description: single-sample normalized data

value: adnexal


title: TRN278

description:
nuclear RNA
TPM.TRN.tsv
X012116_GPEp24_H11_S287

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0412_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: any

value: hispanic

value: dead


title: OTTA2014_0413_Clinical

description: single-sample normalized data

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes

tag: race/ethnicity


title: TRN277


title: OTTA2014_0411_Clinical

description: single-sample normalized data

value: pathogenic BRCA2 mutation

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: AOC


title: OTTA2014_0410_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0409_Clinical

description: single-sample normalized data


title: TRN274

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: OTTA2014_0420_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: TRN273

description:
nuclear RNA
TPM.TRN.tsv
X012116_GPEp24_G6_S270

value: Violet+

value: TRN adjacent


title: OTTA2014_0419_Clinical

description: single-sample normalized data

value: HGSOC

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: TRN276


title: OTTA2014_0405_Clinical

description: single-sample normalized data

value: low

value: pathogenic BRCA1 mutation

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0406_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: omentum

tag: experiment site

tag: site id


title: OTTA2014_0408_Clinical

description: single-sample normalized data


title: TRN272

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN275

description:
nuclear RNA
TPM.TRN.tsv
X012116_GPEp24_G8_S272


title: OTTA2014_0414_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0407_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0403_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN271

description:
nuclear RNA
TPM.TRN.tsv
X012116_GPEp24_G4_S268


title: OTTA2014_0402_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0401_Clinical

description: single-sample normalized data


title: OTTA2014_0400_Clinical

description: single-sample normalized data


title: OTTA2014_0399_Clinical

description: single-sample normalized data


title: OTTA2014_0398_Clinical

description: single-sample normalized data


title: TRN269

description:
nuclear RNA
TPM.TRN.tsv
X012116_GPEp24_G2_S266

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0397_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: white


title: OTTA2014_0396_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0395_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: adnexal


title: OTTA2014_0404_Clinical

description: single-sample normalized data

value: any

value: alive

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0394_Clinical

description: single-sample normalized data

value: hispanic

value: dead


title: OTTA2014_0393_Clinical

description: single-sample normalized data

value: high

value: all wildtypes


title: TRN266

description:
nuclear RNA
TPM.TRN.tsv
X012116_GPEp24_G11_S275

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN267


title: TRN268

description:
nuclear RNA
TPM.TRN.tsv
X012116_GPEp24_G1_S265


title: OTTA2014_0392_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: AOC


title: OTTA2014_0391_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0390_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0384_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0389_Clinical

description: single-sample normalized data


title: OTTA2014_0385_Clinical

description: single-sample normalized data


title: OTTA2014_0386_Clinical

description: single-sample normalized data


title: TRN262

description:
nuclear RNA
TPM.TRN.tsv
X012116_GPEp24_F7_S259

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0387_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0388_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0378_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN270

value: No


title: TRN264

value: Violet+


title: OTTA2014_0383_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN258

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type

value: TRN adjacent


title: TRN263


title: OTTA2014_0374_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0373_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0380_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN260


title: OTTA2014_0382_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: presumed adnexal

tag: experiment site

tag: site id


title: TRN265

description:
nuclear RNA
TPM.TRN.tsv
X012116_GPEp24_G10_S274

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN259

description:
nuclear RNA
TPM.TRN.tsv
X012116_GPEp24_F4_S256


title: OTTA2014_0379_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0376_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_0375_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN255


title: TRN257

description:
nuclear RNA
TPM.TRN.tsv
X012116_GPEp24_F2_S254


title: OTTA2014_0369_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0377_Clinical

description: single-sample normalized data


title: OTTA2014_0381_Clinical

description: single-sample normalized data


title: OTTA2014_0368_Clinical

description: single-sample normalized data


title: OTTA2014_0371_Clinical

description: single-sample normalized data


title: TRN261

description:
nuclear RNA
TPM.TRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN256

description:
nuclear RNA
TPM.TRN.tsv
X012116_GPEp24_F1_S253


title: OTTA2014_0367_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_0365_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: pathogenic BRCA1 mutation

tag: race/ethnicity


title: TRN253

description:
nuclear RNA
TPM.TRN.tsv
X012116_GPEp24_F10_S262


title: OTTA2014_0370_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_0372_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_0364_Clinical

description: single-sample normalized data


title: OTTA2014_0366_Clinical

description: single-sample normalized data

value: low


title: OTTA2014_0363_Clinical

description: single-sample normalized data

value: omentum


title: OTTA2014_0362_Clinical

description: single-sample normalized data

value: adnexal


title: OTTA2014_0361_Clinical

description: single-sample normalized data

value: any


title: TRN250

description:
nuclear RNA
TPM.TRN.tsv
X012116_GPEp24_E7_S247

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_0359_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: white


title: OTTA2014_0357_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: hispanic


title: TRN248

description:
nuclear RNA
TPM.TRN.tsv
X012116_GPEp24_E5_S245


title: TRN252

description:
nuclear RNA
TPM.TRN.tsv
X012116_GPEp24_E9_S249