title: OTTA2014_3241_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3240_Clinical

status: Public on Jul 22 2020

type: RNA

city: Vancouver

first: Michael

middle: S

last: Anglesio

state: BC

department: Obstetrics and Gynecology

country: Canada

institute: University of British Columbia

description: single-sample normalized data

hyb_protocol: NanoString Gene Expression protocol using 500ng of Total RNA as measured by NanoDrop spectrophotmeter. RNA is combined with capture and reporter codesets, and hybridization buffer. Reaction mixtures are hybridized in a thermal cycler at 65C for either short (16H) or long (20H) hybridization. Samples are then washed and fixed to cartridges using the nCounter Prep Station (high-sensitivity mode) for imaging.

scan_protocol: imaging on nCounter Digital Analyzer at maximum FOV

data_processing: Samples data is processed and normalized following protocols described in Talhouk et al (PMID: 27096160) using PrOTYPE. Briefly: Count data is Log2 transformed, the mean of housekeeping genes (ACTB, RPL19, SDHA, POLR1B, and PGK1) subtracted on a per-sample basis, and then normalized relative to reference samples (denoted as Pool1, Pool2, and Pool3). Code available at https://github.com/AlineTalhouk/PrOType

molecule: total RNA

organism: Homo sapiens

source_name: primary high-grade serous tubo-ovarian carcinoma

label_protocol: NanoString probe-specific unique barcode

extract_protocol: Total RNA extracted with the Qiagen miRNeasy FFPE kit (modified protocol)

value: HGSOC

tag: Stage

value: high

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: white

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time

tag: study entry delay

tag: anatomical site

value: presumed adnexal

tag: experiment site

value: VAN

tag: site id

value: NCO


title: notTRN389

type: SRA

city: Cambridge

first: Joshua

last: Levin

state: MA

address: 75 Ames St

department: Stanley Center

country: USA

institute: Broad Institute

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_A08_S5

library_source: transcriptomic

data_processing:
RSEM v1.2.87 was run on raw fastq fileswith default parameters on alignments created by Bowtie on UCSC gene annotation
TPM estimates were tranformed to log space by taking log TPM +1
TopHat2 v2.0.10 was used to map fastq files to mm10 reference
RNASeq-QC was run on the TopHat2 bamfiles to get QC metrics
For TRN and patch-seq samples, cells were removed if they had less than 40% genome mapping rate or or less than 1500 detected genes
Clustering and DE analysis of TRN samples was perfomed with biSNE software (https://github.com/yinqingl/nucseq_analysis), including normalizing the log TPM data to a normalized log TPM
For non-TRN samples, nuclei expressing <1500 genes were removed
Seurat v2.2.0 was used for clustering of the non-TRN samples
Genome_build: mm10
Supplementary_files_format_and_content: Formatted expression matrix (tab deliminated text file) with cells as columns, genes as rows, and TPM values as entries

organism: Mus musculus

source_name: M2 Cortex

extract_protocol:
Sucrose gradient nuclei isolation followed by FACS sorting for Violet+, Violet+ GFP+ or Violet+ NeuN+ nuclei
Modified SMARTseq2 single nuclei RNA-Seq

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+, GFP+

tag: plate type

value: M2 Cortex


title: OTTA2014_3239_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN388

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_A07_S4


title: notTRN386

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_A02_S2


title: notTRN385

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_A01_S1


title: OTTA2014_3238_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN387

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_A06_S3


title: notTRN396

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_B07_S12


title: OTTA2014_3237_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN384

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_H9_S381

source_name: Hippocampus

value: Hippocampus


title: OTTA2014_3236_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3234_Clinical

description: single-sample normalized data


title: OTTA2014_3235_Clinical

description: single-sample normalized data


title: notTRN383

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_H8_S380

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN382

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_H7_S379


title: notTRN381

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_H6_S378


title: OTTA2014_3232_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN380

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_H5_S377


title: notTRN379

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_H4_S376


title: OTTA2014_3233_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3231_Clinical

description: single-sample normalized data

value: low

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3230_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN378

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_H3_S375

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN376

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_H1_S373


title: notTRN377

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_H2_S374


title: OTTA2014_3228_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3229_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3227_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN374

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_H11_S383


title: OTTA2014_3226_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3225_Clinical

description: single-sample normalized data


title: notTRN373

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN375


title: OTTA2014_3224_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: hispanic


title: notTRN371

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_G8_S368


title: OTTA2014_3221_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: alive


title: OTTA2014_3223_Clinical

description: single-sample normalized data

value: HGSOC

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3222_Clinical

description: single-sample normalized data

value: high

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN370

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_G7_S367

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN369

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_G6_S366


title: OTTA2014_3219_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: any


title: OTTA2014_3220_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: white


title: OTTA2014_3218_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time


title: notTRN368

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_G5_S365


title: notTRN367

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_G4_S364


title: OTTA2014_3217_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: presumed adnexal

tag: experiment site

tag: site id


title: notTRN364

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3216_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: VAN


title: notTRN365

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_G2_S362


title: OTTA2014_3215_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: NCO


title: notTRN363

value: sNuc-seq


title: notTRN372

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_G9_S369

value: No


title: notTRN362

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_G11_S371

value: Violet+, GFP+


title: OTTA2014_3214_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3212_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN360

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_F9_S357

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3211_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN359

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_F8_S356


title: notTRN357

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_F6_S354


title: notTRN356

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_F5_S353


title: OTTA2014_3208_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3210_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN366

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_G3_S363


title: OTTA2014_3206_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3209_Clinical

description: single-sample normalized data


title: notTRN355

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_F4_S352

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3207_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3205_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3204_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3203_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3213_Clinical

description: single-sample normalized data


title: notTRN351

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_F12_S360

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN352


title: OTTA2014_3202_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN350


title: notTRN361

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_G10_S370


title: OTTA2014_3201_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3200_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN348

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_E9_S345


title: notTRN358

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: notTRN347

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_E8_S344


title: OTTA2014_3199_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN345

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN354

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_F3_S351


title: notTRN346

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_E7_S343


title: notTRN353

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_F2_S350


title: OTTA2014_3196_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3197_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3195_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3194_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3193_Clinical

description: single-sample normalized data


title: notTRN343

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_E4_S340

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN344

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_E5_S341


title: notTRN342

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_E3_S339


title: OTTA2014_3191_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN341

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_E2_S338


title: notTRN349

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_F10_S358


title: notTRN340

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_E1_S337


title: notTRN339


title: OTTA2014_3189_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3190_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3188_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN337

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_E10_S346

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN338


title: OTTA2014_3186_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN336

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_D9_S333


title: OTTA2014_3198_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3187_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3185_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN334

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_D7_S331

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3192_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN335


title: notTRN332

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_D5_S329


title: notTRN331

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_D4_S328


title: notTRN330

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_D3_S327


title: OTTA2014_3184_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3183_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3182_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN329

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_D2_S326

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3181_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN328

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_D1_S325


title: notTRN327

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_D12_S336


title: OTTA2014_3178_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3179_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN326

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_D11_S335


title: OTTA2014_3177_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN325

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_D10_S334

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3176_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN324

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_C9_S321


title: notTRN323

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_C8_S320


title: OTTA2014_3174_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3175_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN322

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_C7_S319


title: OTTA2014_3173_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN333

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3172_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN321


title: notTRN320

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_C5_S317


title: OTTA2014_3171_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3169_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3180_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN319

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_C4_S316

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3170_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN318

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_C3_S315


title: OTTA2014_3168_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN316

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_C1_S313


title: notTRN317


title: OTTA2014_3166_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN315

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_C12_S324


title: notTRN314

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_C11_S323


title: OTTA2014_3167_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3165_Clinical

description: single-sample normalized data


title: notTRN312

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN313

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_C10_S322


title: OTTA2014_3164_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3162_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3163_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN310

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_B7_S307


title: OTTA2014_3161_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3159_Clinical

description: single-sample normalized data


title: OTTA2014_3160_Clinical

description: single-sample normalized data


title: notTRN308

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_B5_S305

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN309

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_B6_S306


title: notTRN306

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_B3_S303


title: notTRN307

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_B4_S304


title: OTTA2014_3158_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3157_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN305


title: OTTA2014_3156_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN304


title: OTTA2014_3154_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3155_Clinical

description: single-sample normalized data


title: OTTA2014_3153_Clinical

description: single-sample normalized data


title: notTRN302

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_B11_S311

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN311

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_B8_S308


title: notTRN301


title: OTTA2014_3152_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN300

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_A9_S297


title: OTTA2014_3151_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN299

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_A8_S296


title: OTTA2014_3149_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN298

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_A7_S295


title: OTTA2014_3147_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN296

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_A5_S293

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN297

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_A6_S294


title: OTTA2014_3150_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN293

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_A2_S290


title: notTRN303

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_B12_S312


title: notTRN294

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_A3_S291


title: notTRN292

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_A1_S289


title: OTTA2014_3145_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN291

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_A12_S300


title: OTTA2014_3144_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN289

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_A10_S298


title: OTTA2014_3143_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3140_Clinical

description: single-sample normalized data


title: OTTA2014_3142_Clinical

description: single-sample normalized data


title: OTTA2014_3141_Clinical

description: single-sample normalized data


title: notTRN288

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_H9_S285

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN287

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_H8_S284


title: OTTA2014_3139_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN286

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_H7_S283


title: OTTA2014_3138_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3148_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3137_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN285

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_H6_S282

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3146_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3136_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN295

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_A4_S292


title: OTTA2014_3134_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN284

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_H5_S281


title: notTRN283

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_H4_S280


title: OTTA2014_3133_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN282

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_H3_S279

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3132_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN290

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p7_A11_S299


title: notTRN281

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_H2_S278


title: OTTA2014_3131_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN279

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_3130_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3129_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN277

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_H10_S286

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN278


title: OTTA2014_3127_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN276


title: OTTA2014_3126_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3135_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN274

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_G7_S271


title: notTRN272

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_G5_S269


title: OTTA2014_3125_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3124_Clinical

description: single-sample normalized data


title: notTRN275

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_G8_S272

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN271

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_G4_S268


title: OTTA2014_3122_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3123_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN270


title: notTRN280

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_H1_S277


title: notTRN269

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_G2_S266


title: notTRN268

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_G1_S265


title: OTTA2014_3120_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3121_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN267

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3118_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN266

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_G11_S275


title: OTTA2014_3128_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN265

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_G10_S274


title: OTTA2014_3117_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN264

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_F9_S261


title: OTTA2014_3116_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN273

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN263


title: notTRN262

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_F7_S259


title: notTRN261

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_F6_S258


title: OTTA2014_3111_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN260


title: OTTA2014_3112_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3113_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3110_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3109_Clinical

description: single-sample normalized data


title: OTTA2014_3119_Clinical

description: single-sample normalized data


title: notTRN258

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_F3_S255

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN255


title: notTRN257


title: notTRN259

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_F4_S256


title: OTTA2014_3106_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3115_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN256

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_F1_S253


title: OTTA2014_3103_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN253

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: notTRN254

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_F11_S263


title: OTTA2014_3105_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3114_Clinical

description: single-sample normalized data


title: OTTA2014_3102_Clinical

description: single-sample normalized data


title: OTTA2014_3101_Clinical

description: single-sample normalized data


title: OTTA2014_3104_Clinical

description: single-sample normalized data


title: notTRN251

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_E8_S248

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN252

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_E9_S249


title: notTRN250


title: notTRN249


title: OTTA2014_3100_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3099_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN248

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_E5_S245


title: OTTA2014_3108_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3107_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3097_Clinical

description: single-sample normalized data


title: notTRN246

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_E3_S243

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3096_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3095_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3098_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN243

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_E12_S252


title: notTRN244

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_E1_S241


title: notTRN245

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_E2_S242


title: notTRN242


title: OTTA2014_3093_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3094_Clinical

description: single-sample normalized data


title: OTTA2014_3092_Clinical

description: single-sample normalized data


title: notTRN241

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_E10_S250

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN240

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_D9_S237


title: notTRN238

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_D7_S235


title: OTTA2014_3090_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN239

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_D8_S236


title: OTTA2014_3091_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3089_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3088_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN237

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_D6_S234

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3087_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN247

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_E4_S244


title: notTRN235

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_D4_S232


title: notTRN236

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_D5_S233


title: OTTA2014_3085_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN234

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_D3_S231


title: OTTA2014_3083_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3086_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN233

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_D2_S230

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN232

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: notTRN231

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_D12_S240


title: OTTA2014_3084_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3081_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: other


title: notTRN228

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_C9_S225


title: notTRN230

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_D11_S239


title: OTTA2014_3080_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN227

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_C8_S224


title: OTTA2014_3078_Clinical

description: single-sample normalized data

value: unknown

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN225

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_C6_S222

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type

value: Hippocampus


title: notTRN224

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_C5_S221


title: OTTA2014_3079_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN226


title: notTRN223

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_C4_S220


title: OTTA2014_3075_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3076_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3077_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3074_Clinical

description: single-sample normalized data

value: low


title: notTRN222

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_C3_S219

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3072_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN221

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_C2_S218


title: OTTA2014_3073_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3071_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN220

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_C1_S217


title: notTRN219

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_C12_S228


title: OTTA2014_3070_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3082_Clinical

description: single-sample normalized data


title: notTRN229

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_D10_S238

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN218

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_C11_S227


title: OTTA2014_3069_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN217

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_C10_S226


title: OTTA2014_3068_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3067_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN216

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_B9_S213


title: notTRN215


title: notTRN214


title: OTTA2014_3066_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3065_Clinical

description: single-sample normalized data


title: OTTA2014_3064_Clinical

description: single-sample normalized data


title: notTRN213

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN212

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_B5_S209


title: notTRN211

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_B4_S208


title: notTRN210

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_B3_S207


title: OTTA2014_3061_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3063_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3062_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3060_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN209

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_B2_S206

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN208

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_3059_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3058_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3057_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN206

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_B11_S215


title: notTRN207

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_B12_S216


title: notTRN205

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_B10_S214


title: OTTA2014_3056_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3055_Clinical

description: single-sample normalized data


title: OTTA2014_3054_Clinical

description: single-sample normalized data


title: notTRN203

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_A8_S200

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3052_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN200

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_A5_S197


title: notTRN199

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_A4_S196


title: notTRN202

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_A7_S199


title: OTTA2014_3050_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN198

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_A3_S195


title: OTTA2014_3049_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3053_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3048_Clinical

description: single-sample normalized data


title: notTRN197

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_A2_S194

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN196

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_A1_S193


title: notTRN195

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_A12_S204


title: OTTA2014_3046_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN204

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_A9_S201


title: OTTA2014_3045_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3044_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3043_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN192

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_H9_S189

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN191

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_H8_S188


title: notTRN190

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_H7_S187


title: OTTA2014_3051_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3040_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN201

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_A6_S198


title: notTRN194

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_A11_S203


title: notTRN188

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_H5_S185


title: OTTA2014_3041_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3047_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3039_Clinical

description: single-sample normalized data


title: notTRN185

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_H2_S182

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3037_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN184

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_H1_S181


title: OTTA2014_3038_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3036_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3035_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3034_Clinical

description: single-sample normalized data


title: notTRN182

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_H11_S191

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3042_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: hispanic


title: notTRN181

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_H10_S190


title: OTTA2014_3032_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3031_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN180

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_3030_Clinical

description: single-sample normalized data

value: alive

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN179

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_G8_S176

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN189

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_H6_S186


title: notTRN177

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_G6_S174


title: notTRN178

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_G7_S175


title: OTTA2014_3029_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN187

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_H4_S184


title: notTRN186

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_H3_S183


title: OTTA2014_3028_Clinical

description: single-sample normalized data

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN176

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_G5_S173


title: notTRN175

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_G4_S172


title: OTTA2014_3025_Clinical

description: single-sample normalized data

value: any

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN173


title: OTTA2014_3026_Clinical

description: single-sample normalized data

value: white

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN172

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_G1_S169

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN183


title: OTTA2014_3027_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: dead


title: OTTA2014_3022_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: presumed adnexal


title: notTRN174

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_G3_S171


title: notTRN170

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_G11_S179


title: OTTA2014_3033_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: VAN


title: OTTA2014_3024_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id

value: NCO


title: notTRN171

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN167

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_F8_S164

value: No


title: OTTA2014_3020_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3018_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3021_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3017_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN165

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+, GFP+

tag: plate type


title: notTRN166

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_F7_S163


title: notTRN164


title: notTRN169

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_G10_S178


title: OTTA2014_3014_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3019_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3016_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN163

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_F4_S160


title: notTRN161

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_F2_S158


title: OTTA2014_3013_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN160

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_F1_S157

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN159

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_F12_S168


title: OTTA2014_3010_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: all wildtypes

value: USC

value: MAY


title: OTTA2014_3015_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3009_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN168

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_F9_S165

value: Hippocampus


title: OTTA2014_3011_Clinical

description: single-sample normalized data

value: alive

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN158

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_F11_S167

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3012_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3008_Clinical

description: single-sample normalized data

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3007_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN157

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_F10_S166


title: notTRN156

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_E9_S153


title: notTRN155

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_3006_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN153

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_E6_S150

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN154

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_E7_S151


title: notTRN162

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_F3_S159


title: OTTA2014_3004_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: adnexal


title: OTTA2014_3003_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: white


title: notTRN151


title: notTRN152

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_E5_S149


title: OTTA2014_3002_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: presumed adnexal


title: OTTA2014_3001_Clinical

description: single-sample normalized data

value: dead

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN150

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3000_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_2999_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN149


title: notTRN148

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_E1_S145


title: notTRN147

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_E12_S156


title: OTTA2014_2997_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN145

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_E10_S154


title: OTTA2014_2998_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN146

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_E11_S155

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2996_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN144


title: OTTA2014_2994_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN143

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_D8_S140


title: notTRN142

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_D7_S139


title: OTTA2014_3005_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2995_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN140

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_D5_S137

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN141


title: OTTA2014_2993_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_2992_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: pathogenic BRCA2 mutation

tag: race/ethnicity


title: OTTA2014_2990_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2991_Clinical

description: single-sample normalized data

value: low

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN138

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_D3_S135

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: OTTA2014_2988_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN137

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_D2_S134

value: Violet+, GFP+


title: OTTA2014_2989_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes

tag: race/ethnicity

value: USC


title: notTRN193

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p6_A10_S202


title: notTRN136

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_D1_S133


title: OTTA2014_2987_Clinical

description: single-sample normalized data

value: unknown

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: MAY


title: OTTA2014_2986_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation

value: alive

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN135

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_D12_S144

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type

value: Hippocampus


title: OTTA2014_2985_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: high

value: adnexal


title: notTRN134

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_D11_S143


title: notTRN133

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_D10_S142


title: notTRN132

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_C9_S129


title: OTTA2014_2983_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: white


title: OTTA2014_2981_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time

value: presumed adnexal


title: notTRN130

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_C7_S127


title: OTTA2014_2982_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2979_Clinical

description: single-sample normalized data

value: any


title: notTRN131

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_C8_S128

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN129

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_C6_S126

value: No


title: notTRN139

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_D4_S136

value: Violet+, GFP+


title: OTTA2014_2978_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: pathogenic BRCA2 mutation


title: notTRN128

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_C5_S125


title: notTRN124

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_C1_S121


title: OTTA2014_2980_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: USC


title: OTTA2014_2977_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN127

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_C4_S124


title: OTTA2014_2973_Clinical

description: single-sample normalized data

value: low

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN126

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_C3_S123

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN121

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_C10_S130


title: OTTA2014_2971_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: MAY


title: notTRN125

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_C2_S122


title: OTTA2014_2976_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes

tag: race/ethnicity


title: notTRN122

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_C11_S131


title: OTTA2014_2970_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2984_Clinical

description: single-sample normalized data

value: alive

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2969_Clinical

description: single-sample normalized data

value: HGSOC


title: notTRN119

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_B8_S116

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type

value: Hippocampus


title: notTRN118

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_B7_S115


title: OTTA2014_2974_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: high


title: notTRN117

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_B6_S114


title: OTTA2014_2968_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: white


title: OTTA2014_2966_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: adnexal


title: notTRN116

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_B5_S113


title: OTTA2014_2967_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: presumed adnexal

tag: experiment site

tag: site id


title: OTTA2014_2975_Clinical

description: single-sample normalized data

value: unknown

value: dead


title: notTRN123

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: notTRN112

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_B1_S109

value: Violet+, GFP+


title: OTTA2014_2964_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: USC


title: OTTA2014_2963_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_2965_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: MAY


title: OTTA2014_2972_Clinical

description: single-sample normalized data

value: pathogenic BRCA2 mutation

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN114

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_B3_S111

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN111


title: notTRN120

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_B9_S117


title: OTTA2014_2962_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: all wildtypes


title: OTTA2014_2960_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: alive


title: notTRN110

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_B11_S119


title: notTRN109

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_B10_S118


title: notTRN113


title: OTTA2014_2958_Clinical

description: single-sample normalized data

value: HGSOC

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN108

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_A9_S105

value: Hippocampus


title: notTRN115

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_B4_S112


title: OTTA2014_2961_Clinical

description: single-sample normalized data

value: high

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2959_Clinical

description: single-sample normalized data

value: white


title: OTTA2014_2956_Clinical

description: single-sample normalized data


title: notTRN106

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_A7_S103

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN105

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_A6_S102


title: notTRN107

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_A8_S104


title: OTTA2014_3023_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: VAN

value: NCO


title: OTTA2014_2957_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: adnexal


title: OTTA2014_2955_Clinical

description: single-sample normalized data

value: low

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: presumed adnexal


title: notTRN104

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_A5_S101

value: sNuc-seq

value: No


title: notTRN103

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_A4_S100

value: Violet+, GFP+


title: OTTA2014_2954_Clinical

description: single-sample normalized data

value: any

value: dead

tag: study entry delay

tag: anatomical site

tag: experiment site

value: USC

tag: site id


title: notTRN102

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN101

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_A2_S98


title: OTTA2014_2952_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: MAY


title: notTRN100


title: OTTA2014_2951_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: all wildtypes

tag: race/ethnicity

value: alive


title: notTRN99

value: Hippocampus


title: OTTA2014_2948_Clinical

description: single-sample normalized data

value: HGSOC

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2950_Clinical

description: single-sample normalized data

value: high

value: white

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2947_Clinical

description: single-sample normalized data


title: notTRN97

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_A10_S106

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN96

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_H9_S93


title: OTTA2014_2946_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_2953_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN95

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_H8_S92


title: OTTA2014_2945_Clinical

description: single-sample normalized data

value: pathogenic BRCA2 mutation

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN93

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_H6_S90


title: OTTA2014_2944_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN98

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p2_A11_S107

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN94

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_H7_S91


title: OTTA2014_2943_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_2949_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_2942_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN91

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_H4_S88


title: OTTA2014_2941_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN90

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_H3_S87

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2940_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN89

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_2939_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN87


title: OTTA2014_2937_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN85

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_H10_S94


title: notTRN92

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_H5_S89


title: notTRN86


title: OTTA2014_2936_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2935_Clinical

description: single-sample normalized data


title: OTTA2014_2934_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation


title: OTTA2014_2938_Clinical

description: single-sample normalized data

value: hispanic

value: presumed adnexal


title: notTRN84

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_G9_S81

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: OTTA2014_2933_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: low


title: notTRN88

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_H1_S85

value: Violet+, GFP+


title: OTTA2014_2932_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: dead

value: USC


title: notTRN83

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_G8_S80


title: notTRN82


title: OTTA2014_2931_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: MAY


title: notTRN80

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_G5_S77


title: notTRN81

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_G6_S78


title: notTRN79

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_G4_S76


title: notTRN78


title: OTTA2014_2929_Clinical

description: single-sample normalized data

value: any

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2928_Clinical

description: single-sample normalized data


title: notTRN77

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_G2_S74

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type

value: Hippocampus


title: OTTA2014_2927_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: alive


title: notTRN75


title: OTTA2014_2926_Clinical

description: single-sample normalized data

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: white


title: OTTA2014_2924_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN76

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_G1_S73


title: OTTA2014_2925_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN74

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN73


title: OTTA2014_2922_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_2930_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_2919_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2917_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN63

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_F12_S72

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2923_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN61


title: OTTA2014_2915_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: adnexal


title: notTRN60

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_E9_S57


title: OTTA2014_2913_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN72


title: OTTA2014_2909_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2908_Clinical

description: single-sample normalized data


title: notTRN58

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_E7_S55

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN68

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_F5_S65


title: OTTA2014_2921_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN57

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_E6_S54


title: notTRN69

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_F6_S66


title: OTTA2014_2907_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_2920_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN66

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_F3_S63


title: notTRN71

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_F8_S68


title: notTRN67

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: notTRN65


title: notTRN64


title: OTTA2014_2918_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2905_Clinical

description: single-sample normalized data

value: peritoneal


title: OTTA2014_2904_Clinical

description: single-sample normalized data

value: all wildtypes

value: presumed adnexal


title: notTRN62

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_F11_S71

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: OTTA2014_2914_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: dead


title: OTTA2014_2916_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: USC


title: notTRN59

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_E8_S56

value: Violet+, GFP+


title: notTRN53

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_E2_S50


title: OTTA2014_2912_Clinical

description: single-sample normalized data

value: any

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: MAY


title: OTTA2014_2910_Clinical

description: single-sample normalized data

value: HGSOC

value: hispanic

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2911_Clinical

description: single-sample normalized data

value: high


title: notTRN56

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_E5_S53

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type

value: Hippocampus


title: OTTA2014_2906_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: white

value: alive


title: notTRN54

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_E3_S51


title: notTRN50

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_E11_S59


title: notTRN52

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_E1_S49


title: OTTA2014_2902_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN55

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_E4_S52


title: OTTA2014_2903_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN51

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_E12_S60


title: OTTA2014_2899_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

tag: site id


title: notTRN48

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_D9_S45

tag: sample type

tag: used for patch-seq

tag: plate type


title: OTTA2014_2901_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis


title: notTRN47

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_D8_S44


title: OTTA2014_2897_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

value: low

tag: residual disease status


title: notTRN45

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_D6_S42


title: OTTA2014_2898_Clinical

description: single-sample normalized data

value: unknown

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

tag: year of diagnosis


title: notTRN46


title: OTTA2014_2895_Clinical

description: single-sample normalized data

value: all wildtypes

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: presumed adnexal


title: notTRN44

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_D5_S41

value: sNuc-seq

value: No


title: OTTA2014_2896_Clinical

description: single-sample normalized data

value: dead

tag: study entry delay

tag: anatomical site

tag: experiment site

value: USC


title: notTRN49

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_E10_S58

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+, GFP+


title: notTRN43

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_D4_S40

tag: plate type


title: notTRN42

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_D3_S39


title: OTTA2014_2894_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: site id

value: MAY


title: notTRN41

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_2893_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2892_Clinical

description: single-sample normalized data

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: notTRN70


title: OTTA2014_2891_Clinical

description: single-sample normalized data

tag: progression-free survival time

tag: study entry delay

tag: anatomical site

tag: experiment site


title: OTTA2014_2890_Clinical

description: single-sample normalized data

value: any


title: OTTA2014_2900_Clinical

description: single-sample normalized data

value: high


title: notTRN39

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_D12_S48

tag: sample type

tag: used for patch-seq

tag: plate type

value: Hippocampus


title: OTTA2014_2889_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

value: white


title: notTRN37

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_D10_S46


title: notTRN38

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_D11_S47


title: OTTA2014_2887_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

value: alive

tag: site id


title: OTTA2014_2886_Clinical

description: single-sample normalized data

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN35

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_C8_S32


title: notTRN34

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_C7_S31


title: notTRN33

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_C6_S30


title: notTRN31

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_C4_S28


title: notTRN30

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_C3_S27


title: OTTA2014_2882_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2881_Clinical

description: single-sample normalized data

tag: progression-free survival time

tag: study entry delay

tag: anatomical site


title: OTTA2014_2880_Clinical

description: single-sample normalized data

tag: experiment site


title: notTRN40

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_D1_S37

tag: sample type

tag: used for patch-seq

tag: plate type


title: OTTA2014_2883_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis


title: notTRN29

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_C2_S26


title: notTRN28

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_C1_S25


title: notTRN27

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_C12_S36


title: OTTA2014_2879_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

value: pathogenic BRCA1 mutation

tag: site id


title: OTTA2014_2877_Clinical

description: single-sample normalized data

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_2876_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: OTTA2014_2888_Clinical

description: single-sample normalized data

tag: progression-free survival time

tag: study entry delay

tag: anatomical site

value: adnexal


title: notTRN36

tag: sample type

tag: used for patch-seq


title: notTRN32

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_C5_S29

tag: plate type


title: notTRN23

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_B8_S20


title: OTTA2014_2875_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: experiment site


title: OTTA2014_2885_Clinical

description: single-sample normalized data

tag: sample region necrosis

tag: age at diagnosis

tag: Stage


title: notTRN22

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_B7_S19


title: OTTA2014_2873_Clinical

description: single-sample normalized data

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status

tag: site id


title: OTTA2014_2874_Clinical

description: single-sample normalized data

value: low

value: all wildtypes

tag: race/ethnicity

tag: year of diagnosis

tag: vital status


title: OTTA2014_2884_Clinical

description: single-sample normalized data

tag: overall survival time

tag: progression-free survival time

tag: study entry delay

value: presumed adnexal


title: notTRN21

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No


title: OTTA2014_2871_Clinical

description: single-sample normalized data

tag: diagnosis

value: dead

tag: anatomical site

value: USC


title: notTRN20

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_B5_S17

tag: plate type


title: notTRN18

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_B3_S15


title: OTTA2014_2870_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: sample region necrosis

tag: experiment site

value: MAY


title: notTRN17

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_B2_S14


title: OTTA2014_2872_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status


title: OTTA2014_2878_Clinical

description: single-sample normalized data

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

tag: site id


title: OTTA2014_2869_Clinical

description: single-sample normalized data

value: any

tag: year of diagnosis

tag: vital status

tag: overall survival time


title: notTRN26

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_C11_S35

tag: sample type


title: notTRN19

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_B4_S16

tag: used for patch-seq


title: notTRN16

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_B1_S13


title: OTTA2014_2868_Clinical

description: single-sample normalized data

tag: diagnosis

value: high

tag: progression-free survival time

tag: study entry delay


title: notTRN25

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_C10_S34

tag: plate type

value: Hippocampus


title: OTTA2014_2866_Clinical

description: single-sample normalized data

tag: sample region cellularity

tag: sample region necrosis

value: white

tag: anatomical site


title: OTTA2014_2865_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: experiment site


title: OTTA2014_2864_Clinical

description: single-sample normalized data

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN14

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_B11_S23


title: notTRN15

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_B12_S24


title: notTRN13

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: notTRN24

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_B9_S21


title: OTTA2014_2863_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: site id


title: notTRN12

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_A9_S9

tag: sample type

tag: used for patch-seq


title: notTRN11

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_A8_S8


title: OTTA2014_2862_Clinical

description: single-sample normalized data

tag: diagnosis

tag: overall survival time

tag: progression-free survival time


title: notTRN10

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_A7_S7

tag: plate type


title: notTRN9

description:
nuclear RNA
TPM.nonTRN.tsv
X041317p1_A6_S6