title: notTRN782

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_B11_S23

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3635_Clinical

status: Public on Jul 22 2020

type: RNA

city: Vancouver

first: Michael

middle: S

last: Anglesio

state: BC

department: Obstetrics and Gynecology

country: Canada

institute: University of British Columbia

description: single-sample normalized data

hyb_protocol: NanoString Gene Expression protocol using 500ng of Total RNA as measured by NanoDrop spectrophotmeter. RNA is combined with capture and reporter codesets, and hybridization buffer. Reaction mixtures are hybridized in a thermal cycler at 65C for either short (16H) or long (20H) hybridization. Samples are then washed and fixed to cartridges using the nCounter Prep Station (high-sensitivity mode) for imaging.

scan_protocol: imaging on nCounter Digital Analyzer at maximum FOV

data_processing: Samples data is processed and normalized following protocols described in Talhouk et al (PMID: 27096160) using PrOTYPE. Briefly: Count data is Log2 transformed, the mean of housekeeping genes (ACTB, RPL19, SDHA, POLR1B, and PGK1) subtracted on a per-sample basis, and then normalized relative to reference samples (denoted as Pool1, Pool2, and Pool3). Code available at https://github.com/AlineTalhouk/PrOType

molecule: total RNA

organism: Homo sapiens

source_name: primary high-grade serous tubo-ovarian carcinoma

label_protocol: NanoString probe-specific unique barcode

extract_protocol: Total RNA extracted with the Qiagen miRNeasy FFPE kit (modified protocol)

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

tag: Stage

value: high

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

value: alive

tag: overall survival time

tag: progression-free survival time

tag: study entry delay

tag: anatomical site

value: presumed adnexal

tag: experiment site

value: USC

tag: site id

value: TRI


title: OTTA2014_3642_Clinical

description: single-sample normalized data


title: OTTA2014_3630_Clinical

description: single-sample normalized data

value: dead


title: OTTA2014_3633_Clinical

description: single-sample normalized data

value: any


title: OTTA2014_3639_Clinical

description: single-sample normalized data


title: OTTA2014_3634_Clinical

description: single-sample normalized data


title: OTTA2014_3627_Clinical

description: single-sample normalized data


title: notTRN781

type: SRA

city: Cambridge

first: Joshua

last: Levin

state: MA

address: 75 Ames St

department: Stanley Center

country: USA

institute: Broad Institute

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_B10_S22

library_source: transcriptomic

data_processing:
RSEM v1.2.87 was run on raw fastq fileswith default parameters on alignments created by Bowtie on UCSC gene annotation
TPM estimates were tranformed to log space by taking log TPM +1
TopHat2 v2.0.10 was used to map fastq files to mm10 reference
RNASeq-QC was run on the TopHat2 bamfiles to get QC metrics
For TRN and patch-seq samples, cells were removed if they had less than 40% genome mapping rate or or less than 1500 detected genes
Clustering and DE analysis of TRN samples was perfomed with biSNE software (https://github.com/yinqingl/nucseq_analysis), including normalizing the log TPM data to a normalized log TPM
For non-TRN samples, nuclei expressing <1500 genes were removed
Seurat v2.2.0 was used for clustering of the non-TRN samples
Genome_build: mm10
Supplementary_files_format_and_content: Formatted expression matrix (tab deliminated text file) with cells as columns, genes as rows, and TPM values as entries

organism: Mus musculus

source_name: M2 Cortex

extract_protocol:
Sucrose gradient nuclei isolation followed by FACS sorting for Violet+, Violet+ GFP+ or Violet+ NeuN+ nuclei
Modified SMARTseq2 single nuclei RNA-Seq

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+, GFP+

tag: plate type

value: M2 Cortex


title: OTTA2014_3631_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3632_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN780

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: notTRN778

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_A7_S7


title: notTRN777

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_A6_S6


title: notTRN784


title: notTRN779

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_A8_S8


title: OTTA2014_3629_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN783

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_B12_S24


title: OTTA2014_3623_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN773

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_A2_S2

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3628_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN774


title: notTRN776

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_A5_S5


title: OTTA2014_3625_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3624_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN772

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_A1_S1


title: notTRN771

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_A12_S12


title: notTRN770

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_A11_S11


title: OTTA2014_3621_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN769

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_A10_S10

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3622_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3626_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3620_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN768

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_H9_S189

source_name: Somatosensory Cortex

value: Somatosensory Cortex


title: OTTA2014_3619_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN775

description:
nuclear RNA
TPM.nonTRN.tsv
X061616p1_A4_S4

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3615_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3618_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3617_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3613_Clinical

description: single-sample normalized data

value: low

tag: study entry delay

tag: anatomical site

tag: experiment site

value: AOC

tag: site id

value: SRF


title: notTRN763

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_H4_S184

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN767


title: OTTA2014_3614_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN766

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_H7_S187


title: OTTA2014_3612_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN759


title: notTRN764

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_H5_S185


title: notTRN762

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_H3_S183


title: OTTA2014_3609_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN755

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_G8_S176


title: OTTA2014_3616_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN760

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_H1_S181

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3605_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3610_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3611_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN761

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_H2_S182


title: notTRN754

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_G7_S175


title: OTTA2014_3603_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3607_Clinical

description: single-sample normalized data


title: notTRN757

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_H10_S190

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3604_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN756

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_G9_S177


title: OTTA2014_3600_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3606_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN765

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_H6_S186


title: notTRN753

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_G6_S174


title: notTRN751

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_G4_S172


title: notTRN748

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_G1_S169


title: OTTA2014_3601_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3602_Clinical

description: single-sample normalized data


title: notTRN758

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_H11_S191

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3596_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN749

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_G2_S170


title: notTRN746

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_G11_S179


title: notTRN745

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_G10_S178


title: OTTA2014_3608_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3595_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3599_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN747

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN744

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_F9_S165


title: notTRN742


title: notTRN752

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_G5_S173


title: OTTA2014_3591_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3594_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3592_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3590_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN741

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_F6_S162

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3589_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: unknown


title: notTRN739

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_F4_S160


title: notTRN740


title: OTTA2014_3598_Clinical

description: single-sample normalized data

value: HGSOC

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN738

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_F3_S159


title: OTTA2014_3587_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN737

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_F2_S158


title: OTTA2014_3593_Clinical

description: single-sample normalized data

value: high

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3597_Clinical

description: single-sample normalized data

value: alive


title: notTRN743

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_F8_S164

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN736

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_F1_S157


title: OTTA2014_3586_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: presumed adnexal


title: notTRN735

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_F12_S168


title: notTRN734

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_F11_S167


title: OTTA2014_3585_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN733

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_F10_S166


title: OTTA2014_3583_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3584_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3582_Clinical

description: single-sample normalized data


title: notTRN731

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_E8_S152

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN732

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_E9_S153


title: OTTA2014_3581_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN729

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_E6_S150


title: notTRN730

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_E7_S151


title: notTRN728

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_E5_S149


title: OTTA2014_3580_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN727

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_3575_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3577_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3588_Clinical

description: single-sample normalized data


title: OTTA2014_3579_Clinical

description: single-sample normalized data


title: notTRN723

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_E12_S156

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN725

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_E2_S146


title: notTRN722


title: notTRN724

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_E1_S145


title: OTTA2014_3578_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN726

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_E3_S147


title: OTTA2014_3573_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3574_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3570_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN719

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_D8_S140

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN720

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_D9_S141


title: OTTA2014_3569_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3571_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN717

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_D6_S138


title: OTTA2014_3568_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3572_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN721

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_E10_S154

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3576_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN715


title: OTTA2014_3567_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN714

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_D3_S135


title: notTRN716


title: OTTA2014_3566_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN718

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_D7_S139


title: OTTA2014_3563_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN710

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_D11_S143

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3565_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3560_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3561_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3559_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN713

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3564_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN712

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_D1_S133


title: notTRN711

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_D12_S144


title: OTTA2014_3558_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3562_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3555_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN709

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_D10_S142

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3554_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN704

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_C5_S125


title: notTRN708

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_C9_S129


title: notTRN707

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_C8_S128


title: notTRN706

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_C7_S127


title: notTRN701

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_C2_S122


title: OTTA2014_3557_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3551_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3550_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3549_Clinical

description: single-sample normalized data


title: OTTA2014_3556_Clinical

description: single-sample normalized data


title: OTTA2014_3553_Clinical

description: single-sample normalized data


title: notTRN703

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_C4_S124

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN705

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: notTRN696

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_B9_S117


title: notTRN699

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_C12_S132


title: OTTA2014_3548_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN695

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_B8_S116


title: notTRN698

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_C11_S131


title: notTRN700


title: OTTA2014_3546_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3552_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3545_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3544_Clinical

description: single-sample normalized data


title: notTRN697

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_C10_S130

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN694

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_B7_S115


title: OTTA2014_3547_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN693


title: notTRN702


title: OTTA2014_3543_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN692

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_B5_S113


title: OTTA2014_3542_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN690


title: notTRN691

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_B4_S112


title: notTRN689

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_B2_S110


title: OTTA2014_3540_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN750

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_G3_S171

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN688

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_B1_S109


title: notTRN685

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_B10_S118


title: notTRN684

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_A9_S105


title: notTRN686

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_B11_S119


title: notTRN687

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_B12_S120


title: OTTA2014_3537_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3534_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN683

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_A8_S104


title: notTRN681

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_3533_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN680

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_A5_S101


title: OTTA2014_3536_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN682

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_A7_S103

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3532_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN679

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_A4_S100


title: OTTA2014_3529_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3541_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN677


title: OTTA2014_3539_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3531_Clinical

description: single-sample normalized data


title: OTTA2014_3527_Clinical

description: single-sample normalized data


title: OTTA2014_3538_Clinical

description: single-sample normalized data


title: OTTA2014_3528_Clinical

description: single-sample normalized data


title: OTTA2014_3526_Clinical

description: single-sample normalized data


title: OTTA2014_3535_Clinical

description: single-sample normalized data


title: notTRN676

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN675

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_A12_S108


title: notTRN674


title: notTRN672

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_H09_S96


title: OTTA2014_3530_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3525_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3524_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN671

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_H08_S95


title: notTRN673


title: notTRN678

description:
nuclear RNA
TPM.nonTRN.tsv
scxP9_A3_S99


title: OTTA2014_3522_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3520_Clinical

description: single-sample normalized data


title: OTTA2014_3519_Clinical

description: single-sample normalized data


title: notTRN667

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_F10_S91

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3523_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN666

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_F09_S90


title: notTRN665

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_F06_S89


title: OTTA2014_3518_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3515_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN663

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_F04_S87


title: notTRN664

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_F05_S88


title: OTTA2014_3516_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3514_Clinical

description: single-sample normalized data


title: OTTA2014_3517_Clinical

description: single-sample normalized data


title: notTRN661

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_E12_S85

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3513_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN662

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_F03_S86


title: notTRN669

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_H03_S93


title: OTTA2014_3521_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN670

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_H05_S94


title: notTRN660

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_E11_S84


title: OTTA2014_3512_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN659

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_E07_S83


title: OTTA2014_3510_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN668

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_F12_S92

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN657

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_E03_S81


title: notTRN658

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_E04_S82


title: notTRN655

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_E01_S79


title: OTTA2014_3509_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3508_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3507_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3505_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN656

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_E02_S80

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN653

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_D09_S77


title: notTRN652

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_D08_S76


title: OTTA2014_3506_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3511_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3502_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN654

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_D10_S78


title: notTRN650

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_D05_S74


title: OTTA2014_3504_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3500_Clinical

description: single-sample normalized data


title: OTTA2014_3503_Clinical

description: single-sample normalized data


title: notTRN648

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_C11_S72

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN647

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_C07_S71


title: OTTA2014_3501_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN651

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_D07_S75


title: notTRN646

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_C05_S70


title: notTRN649

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_D02_S73


title: OTTA2014_3498_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3497_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN645

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_C04_S69


title: OTTA2014_3495_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3494_Clinical

description: single-sample normalized data


title: notTRN643

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_C02_S67

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN644

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_C03_S68


title: OTTA2014_3496_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN641

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_B11_S65


title: notTRN642

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_B12_S66


title: OTTA2014_3491_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3493_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3490_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN638

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_B08_S62

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN640

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_B10_S64


title: OTTA2014_3492_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN639

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_B09_S63


title: OTTA2014_3488_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3499_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3489_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN634

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_B03_S58

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN637

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_B06_S61


title: notTRN636

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_B05_S60


title: OTTA2014_3482_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3487_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN635

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_B04_S59


title: notTRN631

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_A10_S55


title: notTRN632

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_A11_S56


title: OTTA2014_3483_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3485_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3486_Clinical

description: single-sample normalized data


title: OTTA2014_3484_Clinical

description: single-sample normalized data


title: OTTA2014_3481_Clinical

description: single-sample normalized data


title: notTRN628

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_A04_S52

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN629

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_A06_S53


title: OTTA2014_3480_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN633

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_B01_S57


title: notTRN623

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_H8_S380

source_name: Striatum

value: Striatum


title: notTRN630

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_A09_S54


title: notTRN625

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_A01_S49


title: OTTA2014_3477_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN622

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_H7_S379


title: OTTA2014_3476_Clinical

description: single-sample normalized data

value: white

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: VAN

value: POL


title: OTTA2014_3478_Clinical

description: single-sample normalized data

value: any

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3479_Clinical

description: single-sample normalized data

value: dead


title: OTTA2014_3474_Clinical

description: single-sample normalized data


title: OTTA2014_3473_Clinical

description: single-sample normalized data


title: OTTA2014_3475_Clinical

description: single-sample normalized data


title: notTRN619

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_H4_S376

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+, GFP+

tag: plate type


title: notTRN627

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_A03_S51

value: M2 Cortex


title: notTRN620

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_H5_S377


title: notTRN621

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_H6_S378


title: notTRN618

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: notTRN617

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_H2_S374


title: notTRN616


title: OTTA2014_3467_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: low

value: AOC


title: OTTA2014_3466_Clinical

description: single-sample normalized data

tag: Stage

value: unknown

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3468_Clinical

description: single-sample normalized data

value: HGSOC

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3470_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3465_Clinical

description: single-sample normalized data


title: notTRN614

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3469_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN613


title: notTRN626

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP6_A02_S50


title: notTRN615


title: notTRN624


title: OTTA2014_3464_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN610

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_G7_S367


title: notTRN611

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_G8_S368


title: OTTA2014_3462_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3460_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3472_Clinical

description: single-sample normalized data


title: OTTA2014_3461_Clinical

description: single-sample normalized data


title: OTTA2014_3459_Clinical

description: single-sample normalized data


title: notTRN609

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_G6_S366

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3471_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN608

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_G5_S365


title: notTRN607

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_G4_S364


title: notTRN612

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_G9_S369


title: notTRN604

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_G1_S361


title: notTRN603


title: OTTA2014_3457_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3458_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3463_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3456_Clinical

description: single-sample normalized data


title: notTRN606

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_G3_S363

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3452_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3448_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN597

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_F6_S354


title: notTRN596

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_F5_S353


title: notTRN605


title: OTTA2014_3455_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN602

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_G11_S371


title: notTRN601

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_G10_S370


title: notTRN600

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_F9_S357


title: OTTA2014_3454_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3453_Clinical

description: single-sample normalized data


title: OTTA2014_3445_Clinical

description: single-sample normalized data


title: OTTA2014_3450_Clinical

description: single-sample normalized data


title: OTTA2014_3449_Clinical

description: single-sample normalized data


title: notTRN599

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_F8_S356

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN594

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_F3_S351


title: OTTA2014_3447_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3451_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN598

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_3442_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN590

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_F11_S359


title: OTTA2014_3446_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN595

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_F4_S352

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3438_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN592

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_F1_S349


title: OTTA2014_3444_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3437_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN591


title: OTTA2014_3443_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3441_Clinical

description: single-sample normalized data


title: OTTA2014_3436_Clinical

description: single-sample normalized data


title: notTRN585

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_E6_S342

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3439_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN584

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_E5_S341


title: OTTA2014_3440_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN588

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_E9_S345


title: notTRN587

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_E8_S344


title: notTRN589

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_F10_S358


title: OTTA2014_3430_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: NCO


title: notTRN586

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_E7_S343


title: notTRN580


title: notTRN593

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_F2_S350


title: notTRN583


title: OTTA2014_3435_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3429_Clinical

description: single-sample normalized data

value: high


title: notTRN582

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3432_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: hispanic

value: alive

value: presumed adnexal


title: notTRN578

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_E11_S347

value: Striatum


title: notTRN576


title: OTTA2014_3434_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: white

value: VAN

value: POL


title: notTRN575

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_D8_S332

value: sNuc-seq


title: notTRN579

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_E12_S348

value: No


title: OTTA2014_3427_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN581

value: Violet+, GFP+


title: notTRN574

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_D7_S331


title: OTTA2014_3425_Clinical

description: single-sample normalized data

value: dead

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN577

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_E10_S346

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3428_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: any


title: OTTA2014_3431_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN572


title: OTTA2014_3422_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3424_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3433_Clinical

description: single-sample normalized data

value: low


title: notTRN571

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_D4_S328

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3421_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: unknown


title: notTRN573

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_D6_S330


title: notTRN570

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_D3_S327


title: OTTA2014_3426_Clinical

description: single-sample normalized data

value: HGSOC

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN569

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_3419_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: NCO


title: OTTA2014_3418_Clinical

description: single-sample normalized data

value: high

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3420_Clinical

description: single-sample normalized data

value: hispanic


title: notTRN568

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN567

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_D12_S336


title: notTRN566

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_D11_S335


title: OTTA2014_3416_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3417_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: alive


title: notTRN565

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_D10_S334


title: notTRN564

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_C9_S321


title: notTRN563

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_C8_S320


title: notTRN562

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_C7_S319


title: OTTA2014_3423_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: presumed adnexal


title: OTTA2014_3415_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3413_Clinical

description: single-sample normalized data


title: OTTA2014_3414_Clinical

description: single-sample normalized data


title: notTRN561

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type

value: Striatum


title: OTTA2014_3411_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: white


title: notTRN560

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_C5_S317


title: OTTA2014_3412_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: VAN


title: notTRN557

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_C2_S314


title: OTTA2014_3409_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3408_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN556

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_C1_S313

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3407_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3406_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN555

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_C12_S324


title: notTRN554

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_C11_S323


title: OTTA2014_3410_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3405_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN553

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_C10_S322

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN558

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_C3_S315


title: notTRN550


title: notTRN552


title: OTTA2014_3402_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3403_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3404_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN559

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_C4_S316


title: notTRN551

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_B8_S308


title: OTTA2014_3401_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3398_Clinical

description: single-sample normalized data


title: notTRN547

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_B4_S304

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3400_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3399_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN549

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_B6_S306


title: notTRN548

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_B5_S305


title: notTRN546

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_B3_S303


title: OTTA2014_3396_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3397_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3395_Clinical

description: single-sample normalized data


title: notTRN545

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN544

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_B1_S301


title: notTRN543

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_B12_S312


title: notTRN542

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_B11_S311


title: OTTA2014_3393_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3394_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN540


title: notTRN541

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_B10_S310


title: OTTA2014_3392_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3390_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3391_Clinical

description: single-sample normalized data


title: OTTA2014_3389_Clinical

description: single-sample normalized data


title: notTRN537

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_A6_S294

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN539

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_A8_S296


title: notTRN538


title: notTRN536


title: OTTA2014_3388_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3387_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3385_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3386_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN533

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_A2_S290

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN535

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_A4_S292


title: notTRN534

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_A3_S291


title: notTRN532

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_A1_S289


title: OTTA2014_3384_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3383_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3382_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3381_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN529

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_A10_S298

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3380_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN531

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_A12_S300


title: OTTA2014_3379_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN527

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_H8_S284

value: Somatosensory Cortex


title: OTTA2014_3375_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3377_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3376_Clinical

description: single-sample normalized data


title: notTRN526

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_H7_S283

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN525

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_H6_S282

value: No


title: notTRN524

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_H5_S281

value: Violet+, GFP+


title: OTTA2014_3374_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: dead


title: notTRN523

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_H4_S280


title: notTRN522

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_H3_S279


title: OTTA2014_3373_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN520

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_H1_S277


title: OTTA2014_3372_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3371_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN530

description:
nuclear RNA
TPM.nonTRN.tsv
strP12_A11_S299

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN518

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_3370_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3369_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3368_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3367_Clinical

description: single-sample normalized data

value: any

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN528

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_H9_S285

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN515

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_G8_S272


title: OTTA2014_3378_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3366_Clinical

description: single-sample normalized data

tag: Stage

value: low

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3364_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3365_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN512

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_G5_S269

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN521

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_H2_S278


title: notTRN513


title: notTRN511

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_G4_S268


title: notTRN519


title: OTTA2014_3362_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: unknown


title: notTRN517


title: OTTA2014_3360_Clinical

description: single-sample normalized data

value: HGSOC

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3363_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: NCO


title: OTTA2014_3361_Clinical

description: single-sample normalized data

value: high

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN510

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_G3_S267

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN516

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_G9_S273


title: OTTA2014_3359_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN507


title: notTRN509


title: notTRN506

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_G11_S275


title: notTRN508


title: notTRN505

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_G10_S274


title: OTTA2014_3357_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN504

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_F9_S261


title: OTTA2014_3356_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3358_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN503

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_F8_S260

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN514

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_G7_S271


title: notTRN502

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_F7_S259


title: OTTA2014_3355_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: hispanic


title: OTTA2014_3354_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3352_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN501

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_F6_S258


title: OTTA2014_3350_Clinical

description: single-sample normalized data

value: alive

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN498

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_F3_S255

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN499

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_F4_S256


title: OTTA2014_3349_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: presumed adnexal


title: notTRN496

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: notTRN497


title: notTRN494

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_F11_S263


title: OTTA2014_3347_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3348_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN491

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_E8_S248


title: OTTA2014_3353_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN493

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_F10_S262

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3344_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3343_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3341_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3345_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN490

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_E7_S247

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3346_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3351_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN492

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_E9_S249


title: notTRN488

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_E5_S245


title: OTTA2014_3339_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3340_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN500

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_F5_S257

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3338_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3337_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN487

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_E4_S244


title: notTRN489


title: notTRN495

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_F12_S264


title: notTRN486


title: OTTA2014_3336_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN485


title: notTRN484


title: OTTA2014_3334_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3342_Clinical

description: single-sample normalized data


title: notTRN482

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_E11_S251

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3335_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN483

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_E12_S252


title: OTTA2014_3333_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN481

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_E10_S250


title: OTTA2014_3332_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3331_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3329_Clinical

description: single-sample normalized data


title: OTTA2014_3330_Clinical

description: single-sample normalized data


title: notTRN480

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN479

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_D8_S236


title: notTRN477

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_D6_S234


title: OTTA2014_3328_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN478

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_D7_S235


title: notTRN475

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_D4_S232


title: notTRN476

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_D5_S233


title: notTRN474

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_D3_S231


title: OTTA2014_3327_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3326_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3325_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN472

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN473

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_D2_S230


title: OTTA2014_3324_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3323_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN469

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_D10_S238


title: OTTA2014_3320_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3322_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN468

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_C9_S225

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN467

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_C8_S224


title: OTTA2014_3318_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3319_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3317_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN466

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_C7_S223


title: OTTA2014_3316_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3321_Clinical

description: single-sample normalized data


title: notTRN464

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN463


title: notTRN465

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_C6_S222


title: OTTA2014_3314_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3315_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3312_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN462

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_C3_S219


title: notTRN459


title: notTRN458

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_C11_S227


title: notTRN460


title: OTTA2014_3311_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3309_Clinical

description: single-sample normalized data


title: OTTA2014_3310_Clinical

description: single-sample normalized data


title: OTTA2014_3308_Clinical

description: single-sample normalized data


title: OTTA2014_3313_Clinical

description: single-sample normalized data


title: notTRN470

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN456

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_B9_S213


title: notTRN455

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_B8_S212


title: notTRN454

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_B7_S211


title: notTRN453


title: notTRN461

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_C2_S218


title: OTTA2014_3305_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3306_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN451

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_B4_S208


title: notTRN452

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_B5_S209


title: OTTA2014_3304_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3303_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3301_Clinical

description: single-sample normalized data


title: notTRN450

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_B3_S207

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN449

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_B2_S206


title: OTTA2014_3302_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3300_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN448

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_B1_S205


title: OTTA2014_3298_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3307_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN445

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_B10_S214

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3299_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN444

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_A9_S201


title: notTRN457

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_3296_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN446

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_B11_S215


title: OTTA2014_3295_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN471

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_D12_S240


title: notTRN443

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_A8_S200


title: notTRN442

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_A7_S199


title: OTTA2014_3292_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN441

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_A6_S198

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: notTRN440

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_A5_S197


title: notTRN447

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_B12_S216


title: OTTA2014_3290_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3289_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN438

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_A3_S195


title: OTTA2014_3291_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN439

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_A4_S196


title: notTRN436

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_A1_S193


title: OTTA2014_3286_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3297_Clinical

description: single-sample normalized data


title: OTTA2014_3287_Clinical

description: single-sample normalized data


title: notTRN432

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_H11_S48

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type

value: M2 Cortex


title: notTRN433

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_A10_S202


title: OTTA2014_3285_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis

value: white


title: notTRN434


title: notTRN431

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_H07_S47


title: notTRN435

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_A12_S204


title: OTTA2014_3283_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: VAN


title: OTTA2014_3284_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3294_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3282_Clinical

description: single-sample normalized data


title: OTTA2014_3281_Clinical

description: single-sample normalized data


title: OTTA2014_3280_Clinical

description: single-sample normalized data


title: notTRN429

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_H02_S45

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3279_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3288_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN437

description:
nuclear RNA
TPM.nonTRN.tsv
scxP10_A2_S194

value: Somatosensory Cortex


title: notTRN428

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data

value: sNuc-seq


title: notTRN425

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_G08_S41

value: No


title: notTRN424

value: Violet+, GFP+


title: notTRN426

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_G10_S42


title: OTTA2014_3277_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3275_Clinical

description: single-sample normalized data

value: dead

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN423

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_G04_S39

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3276_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN422

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_G03_S38


title: notTRN420

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_F10_S36


title: OTTA2014_3273_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: notTRN418

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_F08_S34


title: OTTA2014_3272_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3278_Clinical

description: single-sample normalized data

value: any

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN430

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_H04_S46

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3271_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN419

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_F09_S35


title: notTRN416

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_F05_S32


title: OTTA2014_3270_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3269_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN417

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_F07_S33


title: notTRN427

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_G11_S43


title: notTRN414

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_E09_S30


title: OTTA2014_3267_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3268_Clinical

description: single-sample normalized data

value: low


title: OTTA2014_3265_Clinical

description: single-sample normalized data

value: unknown


title: notTRN415

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_E11_S31

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3264_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3266_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: NCO


title: OTTA2014_3274_Clinical

description: single-sample normalized data

value: high

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN421

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_F11_S37


title: notTRN412

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_E07_S28


title: notTRN411

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_E05_S27


title: notTRN410

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_E04_S26


title: notTRN413

description:
nuclear RNA
TPM.nonTRN.tsv
no processed data


title: OTTA2014_3293_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN409

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_E02_S25

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3261_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN408

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_E01_S24


title: OTTA2014_3262_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3260_Clinical

description: single-sample normalized data

value: hispanic

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3259_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN407

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_D09_S23

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3258_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: OTTA2014_3257_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity

value: alive


title: notTRN406

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_D05_S22


title: notTRN405


title: OTTA2014_3256_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: presumed adnexal


title: notTRN404

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_D02_S20

value: M2 Cortex


title: OTTA2014_3255_Clinical

description: single-sample normalized data

value: white

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_3263_Clinical

description: single-sample normalized data

value: VAN


title: OTTA2014_3254_Clinical

description: single-sample normalized data


title: notTRN402

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_C03_S18

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3253_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN400

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_B12_S16


title: notTRN401

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_C02_S17


title: notTRN399

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_B11_S15


title: OTTA2014_3250_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3251_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_3252_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN398

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_B09_S14

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3249_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN397

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_B08_S13


title: OTTA2014_3247_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3248_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN395


title: notTRN394

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_B04_S10


title: OTTA2014_3246_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN393

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_B02_S9

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_3244_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: age at diagnosis


title: notTRN392

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_B01_S8


title: OTTA2014_3243_Clinical

description: single-sample normalized data

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

tag: race/ethnicity


title: OTTA2014_3245_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: notTRN391

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_A12_S7


title: notTRN403

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_C08_S19


title: OTTA2014_3242_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: notTRN390

description:
nuclear RNA
TPM.nonTRN.tsv
pfcP4_A09_S6

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type