title: OTTA2014_2506_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

value: low

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: alive


title: TRN2052

status: Public on Jul 22 2020

type: SRA

city: Cambridge

first: Joshua

last: Levin

state: MA

address: 75 Ames St

department: Stanley Center

country: USA

institute: Broad Institute

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_C9_S33

library_source: transcriptomic

data_processing:
RSEM v1.2.87 was run on raw fastq fileswith default parameters on alignments created by Bowtie on UCSC gene annotation
TPM estimates were tranformed to log space by taking log TPM +1
TopHat2 v2.0.10 was used to map fastq files to mm10 reference
RNASeq-QC was run on the TopHat2 bamfiles to get QC metrics
For TRN and patch-seq samples, cells were removed if they had less than 40% genome mapping rate or or less than 1500 detected genes
Clustering and DE analysis of TRN samples was perfomed with biSNE software (https://github.com/yinqingl/nucseq_analysis), including normalizing the log TPM data to a normalized log TPM
For non-TRN samples, nuclei expressing <1500 genes were removed
Seurat v2.2.0 was used for clustering of the non-TRN samples
Genome_build: mm10
Supplementary_files_format_and_content: Formatted expression matrix (tab deliminated text file) with cells as columns, genes as rows, and TPM values as entries

molecule: total RNA

organism: Mus musculus

source_name: TRN

extract_protocol:
Sucrose gradient nuclei isolation followed by FACS sorting for Violet+, Violet+ GFP+ or Violet+ NeuN+ nuclei
Modified SMARTseq2 single nuclei RNA-Seq

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

value: Violet+, NeuN+

tag: plate type

value: TRN Neun+


title: TRN2051

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_C8_S32


title: OTTA2014_2502_Clinical

type: RNA

city: Vancouver

first: Michael

middle: S

last: Anglesio

state: BC

department: Obstetrics and Gynecology

country: Canada

institute: University of British Columbia

description: single-sample normalized data

hyb_protocol: NanoString Gene Expression protocol using 500ng of Total RNA as measured by NanoDrop spectrophotmeter. RNA is combined with capture and reporter codesets, and hybridization buffer. Reaction mixtures are hybridized in a thermal cycler at 65C for either short (16H) or long (20H) hybridization. Samples are then washed and fixed to cartridges using the nCounter Prep Station (high-sensitivity mode) for imaging.

scan_protocol: imaging on nCounter Digital Analyzer at maximum FOV

data_processing: Samples data is processed and normalized following protocols described in Talhouk et al (PMID: 27096160) using PrOTYPE. Briefly: Count data is Log2 transformed, the mean of housekeeping genes (ACTB, RPL19, SDHA, POLR1B, and PGK1) subtracted on a per-sample basis, and then normalized relative to reference samples (denoted as Pool1, Pool2, and Pool3). Code available at https://github.com/AlineTalhouk/PrOType

organism: Homo sapiens

source_name: primary high-grade serous tubo-ovarian carcinoma

label_protocol: NanoString probe-specific unique barcode

extract_protocol: Total RNA extracted with the Qiagen miRNeasy FFPE kit (modified protocol)

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

value: high

value: any

tag: race/ethnicity

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

value: AOC

tag: site id

value: WMH


title: OTTA2014_2504_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2501_Clinical

description: single-sample normalized data

value: USC


title: OTTA2014_2503_Clinical

description: single-sample normalized data

value: omentum


title: OTTA2014_2513_Clinical

description: single-sample normalized data


title: TRN2049

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_C6_S30

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2499_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN2048

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_C5_S29


title: OTTA2014_2500_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2498_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN2047

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_C4_S28


title: TRN2046

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_C3_S27


title: TRN2045

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_C2_S26


title: TRN2044

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_C1_S25


title: TRN2042

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_C11_S35


title: OTTA2014_2496_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2494_Clinical

description: single-sample normalized data


title: OTTA2014_2495_Clinical

description: single-sample normalized data


title: OTTA2014_2497_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation


title: OTTA2014_2510_Clinical

description: single-sample normalized data


title: OTTA2014_2493_Clinical

description: single-sample normalized data


title: TRN2040

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_B9_S21

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2041

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_C10_S34


title: OTTA2014_2491_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN2050

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_C7_S31


title: OTTA2014_2490_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN2037

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_B6_S18


title: TRN2039

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_B8_S20


title: TRN2036

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_B5_S17


title: TRN2035

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_B4_S16


title: OTTA2014_2489_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN2034

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_B3_S15


title: OTTA2014_2486_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2488_Clinical

description: single-sample normalized data


title: TRN2043

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_C12_S36

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2487_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2485_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN2033

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_B2_S14


title: OTTA2014_2484_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2483_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2482_Clinical

description: single-sample normalized data


title: TRN2032

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_B1_S13

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN2029

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_B10_S22


title: OTTA2014_2480_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN2038

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_B7_S19


title: TRN2028

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_A9_S9


title: TRN2030

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_B11_S23


title: TRN2031

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_B12_S24


title: OTTA2014_2481_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2477_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN2026

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_A7_S7


title: OTTA2014_2479_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2478_Clinical

description: single-sample normalized data


title: OTTA2014_2476_Clinical

description: single-sample normalized data


title: TRN2024

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_A5_S5

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2492_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN2022

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_A3_S3


title: OTTA2014_2475_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN2023

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_A4_S4


title: OTTA2014_2474_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN2020

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_A1_S1


title: OTTA2014_2472_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2471_Clinical

description: single-sample normalized data


title: OTTA2014_2473_Clinical

description: single-sample normalized data


title: TRN2027

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_A8_S8

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2470_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN2019

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_A12_S12


title: OTTA2014_2469_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN2017

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_A10_S10


title: TRN2016

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_H9_S381


title: OTTA2014_2467_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN2015

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_H8_S380


title: OTTA2014_2466_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: unknown

tag: brca1 and brca2 germline mutation status


title: TRN2025

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_A6_S6

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2468_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN2014

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_H7_S379


title: OTTA2014_2465_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2464_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN2013

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_H6_S378


title: TRN2012

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_H5_S377


title: OTTA2014_2462_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN2021

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_A2_S2

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2463_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN2011

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_H4_S376


title: TRN2010

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_H3_S375


title: TRN2018

description:
nuclear RNA
TPM.TRN.tsv
X102816_TRNpA_A11_S11


title: TRN2008

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_H1_S373


title: TRN2009

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_H2_S374


title: TRN2007

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_H12_S384


title: OTTA2014_2459_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN2006

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_H11_S383


title: OTTA2014_2458_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2457_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2456_Clinical

description: single-sample normalized data


title: TRN2005

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_H10_S382

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2454_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: peritoneal

value: VAN


title: TRN2003

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_G8_S368

value: sNuc-seq


title: TRN2004

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_G9_S369

value: No


title: OTTA2014_2453_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN2002

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_G7_S367

value: Violet+, NeuN+


title: OTTA2014_2452_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN2001

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_G6_S366

value: TRN Neun+


title: TRN2000

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_G5_S365


title: TRN1999

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_G4_S364


title: TRN1998

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_G3_S363


title: TRN1997

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_G2_S362


title: OTTA2014_2449_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2450_Clinical

description: single-sample normalized data


title: OTTA2014_2460_Clinical

description: single-sample normalized data

value: high


title: OTTA2014_2447_Clinical

description: single-sample normalized data


title: OTTA2014_2448_Clinical

description: single-sample normalized data


title: OTTA2014_2455_Clinical

description: single-sample normalized data

value: any


title: TRN1996

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_G1_S361

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1994

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_G11_S371


title: TRN1995

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_G12_S372


title: TRN1993

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_G10_S370


title: OTTA2014_2451_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2461_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2446_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

tag: site id


title: OTTA2014_2445_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2442_Clinical

description: single-sample normalized data


title: TRN1992

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_F9_S357

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2443_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1991

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_F8_S356


title: TRN1990

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_F7_S355


title: TRN1989

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_F6_S354


title: TRN1987

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_F4_S352


title: OTTA2014_2440_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: alive

tag: overall survival time

tag: progression-free survival time


title: TRN1986

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_F3_S351


title: TRN1985

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_F2_S350


title: TRN1984

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_F1_S349


title: TRN1983

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_F12_S360


title: OTTA2014_2438_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2444_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

value: low

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2436_Clinical

description: single-sample normalized data


title: OTTA2014_2434_Clinical

description: single-sample normalized data


title: OTTA2014_2433_Clinical

description: single-sample normalized data


title: TRN1981

description:
nuclear RNA
TPM.TRN.tsv
no processed data

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2435_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2432_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2441_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1979

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_E8_S344


title: TRN1977

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_E6_S342


title: TRN1976

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_E5_S341


title: TRN1978

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_E7_S343


title: TRN1982

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_F11_S359


title: OTTA2014_2431_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2428_Clinical

description: single-sample normalized data


title: OTTA2014_2429_Clinical

description: single-sample normalized data


title: OTTA2014_2430_Clinical

description: single-sample normalized data


title: OTTA2014_2437_Clinical

description: single-sample normalized data


title: OTTA2014_2439_Clinical

description: single-sample normalized data


title: TRN1975

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_E4_S340

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2426_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1974

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_E3_S339


title: OTTA2014_2427_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2425_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2424_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1973

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_E2_S338

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2423_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1971

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_E12_S348


title: TRN1972

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_E1_S337


title: OTTA2014_2422_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1969

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_E10_S346


title: TRN1970

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_E11_S347


title: OTTA2014_2420_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2421_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: presumed adnexal


title: OTTA2014_2419_Clinical

description: single-sample normalized data


title: TRN1968

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_D9_S333

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1967

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_D8_S332


title: TRN1966

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_D7_S331


title: OTTA2014_2418_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: omentum


title: OTTA2014_2417_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1965

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_D6_S330


title: TRN1964

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_D5_S329


title: OTTA2014_2416_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1963

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_D4_S328


title: TRN1980

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_E9_S345


title: TRN1961

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_D2_S326


title: OTTA2014_2414_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2413_Clinical

description: single-sample normalized data


title: OTTA2014_2415_Clinical

description: single-sample normalized data


title: TRN1960

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_D1_S325

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2412_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2411_Clinical

description: single-sample normalized data

value: pathogenic BRCA2 mutation

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1988

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_F5_S353


title: OTTA2014_2410_Clinical

description: single-sample normalized data

value: unknown

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1959

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_D12_S336


title: TRN1958

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_D11_S335


title: TRN1957

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_D10_S334


title: TRN1956

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_C9_S321


title: TRN1955

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_C8_S320


title: OTTA2014_2408_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1954

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_C7_S319

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1953

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_C6_S318


title: TRN1962

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_D3_S327


title: OTTA2014_2407_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: peritoneal


title: OTTA2014_2406_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: VAN


title: OTTA2014_2405_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2404_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1952

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_C5_S317

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1951

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_C4_S316

value: No


title: TRN1950

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_C3_S315

value: Violet+, NeuN+


title: TRN1947

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_C12_S324

value: TRN Neun+


title: TRN1949

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_C2_S314


title: OTTA2014_2402_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2400_Clinical

description: single-sample normalized data

value: high

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2399_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2409_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status

value: pathogenic BRCA1 mutation


title: TRN1946

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_C11_S323

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1948

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_C1_S313


title: OTTA2014_2398_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: adnexal


title: TRN1945

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_C10_S322


title: OTTA2014_2397_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: alive

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2395_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2394_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: dead


title: TRN1944

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_B9_S309

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1943

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_B8_S308


title: OTTA2014_2403_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

value: low

tag: race/ethnicity


title: TRN1941

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_B6_S306


title: TRN1942

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_B7_S307


title: TRN1940

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_B5_S305


title: OTTA2014_2401_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: omentum


title: TRN1939

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_B4_S304


title: OTTA2014_2396_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2392_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2391_Clinical

description: single-sample normalized data


title: OTTA2014_2387_Clinical

description: single-sample normalized data


title: OTTA2014_2389_Clinical

description: single-sample normalized data


title: OTTA2014_2390_Clinical

description: single-sample normalized data


title: OTTA2014_2388_Clinical

description: single-sample normalized data


title: TRN1934

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_B11_S311

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1938

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_B3_S303


title: TRN1933

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_B10_S310


title: TRN1937

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_B2_S302


title: TRN1936

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_B1_S301


title: TRN1932

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_A9_S297


title: OTTA2014_2382_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1931

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_A8_S296


title: OTTA2014_2393_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2386_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2384_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2385_Clinical

description: single-sample normalized data


title: OTTA2014_2380_Clinical

description: single-sample normalized data

value: upper genital track


title: OTTA2014_2381_Clinical

description: single-sample normalized data

value: presumed adnexal


title: OTTA2014_2379_Clinical

description: single-sample normalized data


title: TRN1929

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_A6_S294

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1928

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_A5_S293


title: OTTA2014_2378_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

value: unknown

tag: race/ethnicity


title: TRN1935

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_B12_S312


title: TRN1927

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_A4_S292


title: OTTA2014_2377_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: VAN


title: OTTA2014_2383_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1926

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_A3_S291

value: sNuc-seq


title: TRN1924

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_A1_S289

value: No


title: TRN1923

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_A12_S300

value: Violet+, NeuN+


title: TRN1925

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_A2_S290

value: TRN Neun+


title: TRN1922

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_A11_S299


title: OTTA2014_2375_Clinical

description: single-sample normalized data

value: HGSOC

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2376_Clinical

description: single-sample normalized data

value: high


title: TRN1930

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_A7_S295

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2373_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

value: any

tag: race/ethnicity


title: OTTA2014_2372_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2370_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2374_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1921

description:
nuclear RNA
TPM.TRN.tsv
X102816NP4_A10_S298

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1917

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_H6_S282


title: OTTA2014_2369_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2367_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1916

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_H5_S281


title: OTTA2014_2366_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: peritoneal

tag: experiment site

tag: site id


title: TRN1913

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_H2_S278


title: OTTA2014_2365_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2363_Clinical

description: single-sample normalized data


title: TRN1914

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_H3_S279

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1919

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_H8_S284


title: OTTA2014_2364_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: adnexal


title: TRN1912

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_H1_S277


title: OTTA2014_2362_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1920

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_H9_S285


title: OTTA2014_2371_Clinical

description: single-sample normalized data

value: alive

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1918

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_H7_S283


title: OTTA2014_2368_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1910

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_H11_S287

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1908

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_G9_S273


title: OTTA2014_2360_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1911

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_H12_S288


title: OTTA2014_2361_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time


title: TRN1909

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_H10_S286


title: TRN1907

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_G8_S272


title: OTTA2014_2359_Clinical

description: single-sample normalized data

value: low

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1905

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_G6_S270


title: OTTA2014_2356_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1915

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_H4_S280

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2357_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: omentum


title: OTTA2014_2358_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: upper genital track


title: TRN1904

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_G5_S269


title: OTTA2014_2355_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2354_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2353_Clinical

description: single-sample normalized data


title: TRN1903

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_G4_S268

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2352_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1901

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_G2_S266


title: TRN1900

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_G1_S265


title: TRN1899

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_G12_S276


title: TRN1906

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_G7_S271


title: TRN1897

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_G10_S274


title: TRN1895

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_F8_S260


title: OTTA2014_2351_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1898

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_G11_S275


title: OTTA2014_2347_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1894

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_F7_S259


title: TRN1896

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_F9_S261


title: OTTA2014_2349_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2348_Clinical

description: single-sample normalized data


title: OTTA2014_2350_Clinical

description: single-sample normalized data


title: TRN1893

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_F6_S258

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1892

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_F5_S257


title: OTTA2014_2344_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1891

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_F4_S256


title: OTTA2014_2345_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2346_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2343_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2342_Clinical

description: single-sample normalized data


title: OTTA2014_2341_Clinical

description: single-sample normalized data


title: OTTA2014_2340_Clinical

description: single-sample normalized data


title: TRN1890

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_F3_S255

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1902

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_G3_S267


title: OTTA2014_2339_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1888

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_F1_S253


title: OTTA2014_2337_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2338_Clinical

description: single-sample normalized data

value: pathogenic BRCA2 mutation

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1887

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_F12_S264


title: TRN1885

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_F10_S262


title: TRN1886

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_F11_S263


title: TRN1884

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_E9_S249


title: OTTA2014_2336_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2335_Clinical

description: single-sample normalized data

value: unknown


title: TRN1879

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_E4_S244

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1881

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_E6_S246


title: TRN1882

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_E7_S247


title: OTTA2014_2334_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: VAN


title: TRN1880

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_E5_S245

value: sNuc-seq


title: OTTA2014_2333_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1889

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_F2_S254

value: No


title: OTTA2014_2332_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2327_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2329_Clinical

description: single-sample normalized data


title: OTTA2014_2328_Clinical

description: single-sample normalized data


title: OTTA2014_2326_Clinical

description: single-sample normalized data


title: OTTA2014_2330_Clinical

description: single-sample normalized data


title: TRN1877

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_E2_S242

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

value: Violet+, NeuN+

tag: plate type


title: TRN1876

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_E1_S241

value: TRN Neun+


title: OTTA2014_2331_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1875

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: OTTA2014_2325_Clinical

description: single-sample normalized data

value: high

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1874

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_E11_S251


title: OTTA2014_2324_Clinical

description: single-sample normalized data

value: any

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1883

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_E8_S248


title: TRN1873

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_E10_S250


title: OTTA2014_2323_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1871

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_D8_S236

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2322_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: peritoneal


title: TRN1870

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_D7_S235


title: TRN1878

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_E3_S243


title: OTTA2014_2321_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2320_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

tag: site id


title: TRN1868

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_D5_S233


title: OTTA2014_2319_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: alive


title: TRN1867

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_D4_S232

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2318_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2317_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time


title: TRN1865

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_D2_S230


title: OTTA2014_2313_Clinical

description: single-sample normalized data

value: low

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1862

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_D11_S239


title: TRN1866

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_D3_S231


title: TRN1863

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_D12_S240


title: TRN1872

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_D9_S237


title: TRN1860

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_C9_S225


title: TRN1859

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_C8_S224


title: OTTA2014_2314_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: omentum


title: OTTA2014_2315_Clinical

description: single-sample normalized data


title: OTTA2014_2312_Clinical

description: single-sample normalized data


title: OTTA2014_2316_Clinical

description: single-sample normalized data


title: OTTA2014_2311_Clinical

description: single-sample normalized data


title: TRN1869

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_D6_S234

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1858

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_C7_S223


title: TRN1857

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_C6_S222


title: TRN1856

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_C5_S221


title: OTTA2014_2310_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2308_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2309_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2307_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2305_Clinical

description: single-sample normalized data

value: presumed adnexal


title: OTTA2014_2306_Clinical

description: single-sample normalized data


title: TRN1855

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_C4_S220

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1864

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_D1_S229


title: TRN1861

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: TRN1854

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_C3_S219


title: OTTA2014_2304_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2303_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1853


title: OTTA2014_2302_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1852

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_C1_S217


title: TRN1850

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_C11_S227


title: TRN1849

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_C10_S226


title: TRN1847

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_B8_S212


title: TRN1846

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_B7_S211


title: TRN1845

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_B6_S210


title: TRN1848

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_B9_S213


title: TRN1851

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_C12_S228


title: OTTA2014_2298_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1843

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_B4_S208

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2299_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1842

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_B3_S207


title: OTTA2014_2297_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2296_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2301_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2295_Clinical

description: single-sample normalized data


title: TRN1844

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_B5_S209

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2293_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1841

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_B2_S206


title: OTTA2014_2294_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1838

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_B11_S215


title: TRN1839

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_B12_S216


title: OTTA2014_2291_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1840

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_B1_S205


title: OTTA2014_2290_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2289_Clinical

description: single-sample normalized data


title: OTTA2014_2300_Clinical

description: single-sample normalized data


title: OTTA2014_2288_Clinical

description: single-sample normalized data


title: OTTA2014_2287_Clinical

description: single-sample normalized data


title: TRN1836

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_A9_S201

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1834

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_A7_S199


title: OTTA2014_2286_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1835

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_A8_S200


title: TRN1833

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_A6_S198


title: OTTA2014_2285_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1831

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_A4_S196


title: OTTA2014_2292_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1832

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_A5_S197


title: TRN1828

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_A1_S193


title: OTTA2014_2283_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1827

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_A12_S204

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1830

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_A3_S195


title: TRN1829

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_A2_S194


title: TRN1826

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_A11_S203


title: OTTA2014_2279_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2282_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2280_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1825

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_A10_S202


title: OTTA2014_2281_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2278_Clinical

description: single-sample normalized data


title: OTTA2014_2277_Clinical

description: single-sample normalized data


title: TRN1837

description:
nuclear RNA
TPM.TRN.tsv
X102816NP3_B10_S214

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2276_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1824

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_H9_S189


title: TRN1823

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_H8_S188


title: OTTA2014_2274_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2273_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2275_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2284_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation


title: OTTA2014_2272_Clinical

description: single-sample normalized data


title: TRN1821

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_H6_S186

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1820

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_H5_S185


title: TRN1819

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: OTTA2014_2271_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1818

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_H3_S183


title: OTTA2014_2270_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1816

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_H1_S181


title: TRN1817

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_H2_S182


title: OTTA2014_2269_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1815

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_H12_S192


title: TRN1813

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_H10_S190


title: TRN1814

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_H11_S191


title: OTTA2014_2265_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1812

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_G9_S177

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1811

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_G8_S176


title: OTTA2014_2264_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2263_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2266_Clinical

description: single-sample normalized data

value: pathogenic BRCA2 mutation

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2262_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: VAN


title: OTTA2014_2260_Clinical

description: single-sample normalized data

value: unknown


title: TRN1810

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_G7_S175

tag: sample type

value: sNuc-seq

tag: used for patch-seq

value: No

tag: facs sorting signal

tag: plate type


title: OTTA2014_2261_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1809

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_G6_S174

value: Violet+, NeuN+

value: TRN Neun+


title: OTTA2014_2259_Clinical

description: single-sample normalized data

value: HGSOC

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1808

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_G5_S173


title: OTTA2014_2258_Clinical

description: single-sample normalized data

value: high

value: any

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1822

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_H7_S187


title: TRN1807

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_G4_S172


title: TRN1806

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_G3_S171


title: OTTA2014_2268_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: adnexal


title: OTTA2014_2267_Clinical

description: single-sample normalized data


title: OTTA2014_2255_Clinical

description: single-sample normalized data

value: alive


title: OTTA2014_2257_Clinical

description: single-sample normalized data

value: dead


title: TRN1803

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_G12_S180

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1805

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_G2_S170


title: OTTA2014_2253_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1802

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: OTTA2014_2256_Clinical

description: single-sample normalized data

value: low

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1801

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_G10_S178


title: TRN1799

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_F8_S164


title: OTTA2014_2252_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: upper genital track

tag: experiment site

tag: site id


title: OTTA2014_2251_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2250_Clinical

description: single-sample normalized data


title: TRN1800

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_F9_S165

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2249_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: omentum


title: OTTA2014_2248_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1798

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_F7_S163


title: TRN1797

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_F6_S162


title: OTTA2014_2247_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1796

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_F5_S161


title: OTTA2014_2246_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1795

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_F4_S160

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1794

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_F3_S159


title: OTTA2014_2245_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2244_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2243_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: peritoneal

tag: experiment site

tag: site id


title: TRN1804

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_G1_S169


title: TRN1793

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_F2_S158


title: OTTA2014_2254_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1792

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_F1_S157

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2242_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1790

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_F11_S167


title: OTTA2014_2241_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1789

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_F10_S166


title: TRN1788

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_E9_S153


title: OTTA2014_2239_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2238_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1786

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_E7_S151

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1785

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_E6_S150


title: OTTA2014_2237_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1784

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_E5_S149


title: OTTA2014_2234_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1782

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_E3_S147


title: OTTA2014_2235_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2236_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: pathogenic BRCA1 mutation


title: TRN1783

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_E4_S148

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1781

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_E2_S146


title: OTTA2014_2231_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: VAN


title: TRN1780

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_E1_S145


title: OTTA2014_2230_Clinical

description: single-sample normalized data

value: unknown

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2232_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1779

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_E12_S156

value: sNuc-seq


title: TRN1778

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_E11_S155

value: No


title: TRN1777

description:
nuclear RNA
TPM.TRN.tsv
no processed data

value: Violet+, NeuN+


title: OTTA2014_2229_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1791

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_F12_S168

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type

value: TRN Neun+


title: OTTA2014_2227_Clinical

description: single-sample normalized data

tag: diagnosis

value: HGSOC

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2240_Clinical

description: single-sample normalized data

value: high

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2228_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1787

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_E8_S152


title: TRN1776


title: TRN1775

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_D8_S140


title: OTTA2014_2225_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

value: any

tag: brca1 and brca2 germline mutation status


title: TRN1774

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_D7_S139

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1773

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_D6_S138


title: OTTA2014_2233_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: adnexal


title: TRN1771

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_D4_S136


title: OTTA2014_2224_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1770

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_D3_S135


title: OTTA2014_2222_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2223_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2221_Clinical

description: single-sample normalized data


title: TRN1769

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_D2_S134

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2219_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: alive


title: OTTA2014_2218_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

value: dead

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2217_Clinical

description: single-sample normalized data

value: low

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2216_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1766

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_D11_S143

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1765

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_D10_S142


title: TRN1763

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_C8_S128


title: TRN1764

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_C9_S129


title: TRN1762

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_C7_S127


title: TRN1760

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_C5_S125


title: TRN1772

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_D5_S137


title: OTTA2014_2215_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1768

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_D1_S133


title: OTTA2014_2213_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2214_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2210_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2220_Clinical

description: single-sample normalized data

value: pathogenic BRCA2 mutation


title: TRN1759

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_C4_S124

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2226_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1767

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_D12_S144


title: OTTA2014_2209_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1758

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_C3_S123


title: TRN1756

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_C1_S121


title: TRN1757

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_C2_S122


title: OTTA2014_2206_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: omentum

tag: experiment site

tag: site id


title: OTTA2014_2207_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2211_Clinical

description: single-sample normalized data


title: TRN1755

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_C12_S132

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2205_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1754

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_C11_S131


title: TRN1761

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_C6_S126


title: TRN1753

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: TRN1752

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_B9_S117


title: OTTA2014_2203_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2202_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2201_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1751

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_B8_S116

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2200_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2208_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time

value: upper genital track


title: OTTA2014_2199_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1749

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_B6_S114


title: OTTA2014_2198_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: pathogenic BRCA1 mutation


title: TRN1747

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_B4_S112

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1746

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_B3_S111


title: TRN1748

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_B5_S113


title: TRN1745

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_B2_S110


title: OTTA2014_2197_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: VAN


title: TRN1750

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_B7_S115


title: OTTA2014_2195_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2194_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: peritoneal

tag: experiment site

tag: site id


title: OTTA2014_2196_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1742

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_B11_S119

tag: sample type

value: sNuc-seq

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2204_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

value: unknown

tag: race/ethnicity


title: TRN1743

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_B12_S120

value: No

value: Violet+, NeuN+


title: TRN1740

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_A9_S105

value: TRN Neun+


title: TRN1739

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_A8_S104


title: OTTA2014_2192_Clinical

description: single-sample normalized data

value: HGSOC

value: high

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1741

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_B10_S118


title: OTTA2014_2189_Clinical

description: single-sample normalized data

value: any

tag: study entry delay

tag: anatomical site

value: adnexal

tag: experiment site

tag: site id


title: TRN1738

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_A7_S103


title: OTTA2014_2190_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status

value: dead


title: OTTA2014_2188_Clinical

description: single-sample normalized data


title: OTTA2014_2191_Clinical

description: single-sample normalized data


title: TRN1736

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_A5_S101

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1735

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_A4_S100


title: OTTA2014_2186_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1737

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_A6_S102


title: OTTA2014_2187_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2185_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2184_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1734

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_A3_S99

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2182_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1731

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_A12_S108


title: TRN1732

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_A1_S97


title: OTTA2014_2193_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1744

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_B1_S109


title: TRN1729

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_A10_S106


title: OTTA2014_2181_Clinical

description: single-sample normalized data

value: alive

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2183_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2179_Clinical

description: single-sample normalized data


title: TRN1730

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_A11_S107

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1728

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_H9_S93


title: OTTA2014_2180_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1726

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_H7_S91


title: OTTA2014_2178_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1727

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_H8_S92


title: TRN1725

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_H6_S90


title: OTTA2014_2175_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2176_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1724

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_H5_S89

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1733

description:
nuclear RNA
TPM.TRN.tsv
X102816NP2_A2_S98


title: TRN1723

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_H4_S88


title: OTTA2014_2172_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1721

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_H2_S86


title: TRN1719

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_H12_S96


title: OTTA2014_2171_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2170_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2169_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

value: low

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1720

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_H1_S85

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2168_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity

value: presumed adnexal


title: TRN1716

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_G9_S81


title: TRN1717

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_H10_S94


title: TRN1715

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_G8_S80


title: OTTA2014_2173_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2167_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

value: omentum

tag: experiment site

tag: site id


title: TRN1713

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_G6_S78


title: OTTA2014_2165_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2164_Clinical

description: single-sample normalized data


title: TRN1712

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_G5_S77

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1711

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_G4_S76


title: OTTA2014_2212_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1722

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_H3_S87


title: OTTA2014_2161_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2162_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2160_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1710

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_G3_S75

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1709

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_G2_S74


title: OTTA2014_2166_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2159_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1708

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_G1_S73


title: OTTA2014_2158_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1714

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_G7_S79


title: TRN1707

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_G12_S84


title: TRN1705

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_G10_S82


title: TRN1706

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_G11_S83


title: OTTA2014_2157_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2163_Clinical

description: single-sample normalized data


title: TRN1703

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_F8_S68

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1704

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_F9_S69


title: OTTA2014_2156_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1702

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_F7_S67


title: OTTA2014_2155_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2154_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2152_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1700

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_F5_S65

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2150_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1699

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_F4_S64


title: OTTA2014_2151_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1698

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_F3_S63


title: OTTA2014_2149_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2177_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1695

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_F12_S72

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2146_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1718

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_H11_S95


title: OTTA2014_2148_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2145_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2153_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2147_Clinical

description: single-sample normalized data


title: TRN1697

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_F2_S62

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2144_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1701

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_F6_S66


title: TRN1692

description:
nuclear RNA
TPM.TRN.tsv
no processed data


title: OTTA2014_2143_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1694

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_F11_S71


title: TRN1696

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_F1_S61


title: TRN1693

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_F10_S70


title: OTTA2014_2142_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1691

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_E8_S56


title: OTTA2014_2141_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1689

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_E6_S54

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2140_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2139_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: TRN1690

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_E7_S55


title: TRN1687

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_E4_S52


title: TRN1688

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_E5_S53


title: TRN1686

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_E3_S51


title: OTTA2014_2138_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2136_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1685

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_E2_S50

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1684

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_E1_S49


title: OTTA2014_2134_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1683

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_E12_S60


title: TRN1680

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_D9_S45


title: TRN1679

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_D8_S44


title: OTTA2014_2131_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2132_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2133_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: TRN1681

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_E10_S58

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1677

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_D6_S42


title: TRN1678

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_D7_S43


title: OTTA2014_2129_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1675

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_D4_S40


title: TRN1674

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_D3_S39


title: OTTA2014_2128_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2126_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: OTTA2014_2127_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2130_Clinical

description: single-sample normalized data


title: TRN1673

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_D2_S38

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: OTTA2014_2137_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: OTTA2014_2124_Clinical

description: single-sample normalized data

value: pathogenic BRCA1 mutation

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2125_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

value: VAN

tag: site id


title: OTTA2014_2123_Clinical

description: single-sample normalized data

tag: age at diagnosis

tag: Stage

tag: residual disease status

tag: brca1 and brca2 germline mutation status


title: OTTA2014_2135_Clinical

description: single-sample normalized data


title: OTTA2014_2122_Clinical

description: single-sample normalized data


title: TRN1672

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_D1_S37

tag: sample type

tag: used for patch-seq

tag: facs sorting signal

tag: plate type


title: TRN1682

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_E11_S59


title: TRN1671

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_D12_S48


title: OTTA2014_2121_Clinical

description: single-sample normalized data

tag: diagnosis

tag: sample region cellularity

tag: sample region necrosis

tag: race/ethnicity


title: TRN1670

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_D11_S47


title: TRN1676

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_D5_S41


title: TRN1668

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_C9_S33


title: OTTA2014_2120_Clinical

description: single-sample normalized data

tag: year of diagnosis

tag: vital status

tag: overall survival time

tag: progression-free survival time


title: OTTA2014_2119_Clinical

description: single-sample normalized data

tag: study entry delay

tag: anatomical site

tag: experiment site

tag: site id


title: TRN1666

description:
nuclear RNA
TPM.TRN.tsv
X102816NP1_C7_S31