title: FFPE X118720842 [X59_1036]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X218281113 [X60_M367]

status: Public on Jan 08 2019

type: RNA

city: Boston

first: Rulla

middle: M

last: Tamimi

state: MA

address: 181 Longwood Avenue

department: Medicine

country: USA

institute: Brigham and Women's Hospital

hyb_protocol: Hybridization was performed according to standard protocols

scan_protocol: Scanning was performed according to standard protocols

data_processing: Gene expression data were normalized and summarized using Robust Multiarray Average (RMA)

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: breast tissue

label_protocol: Labeling was performed according to standard Affymetrix protocols

extract_protocol:
Formalin-fixed paraffin-embedded tissue blocks
Qiagen AllPrep RNA isolation kit was used to isolate total RNA

value: tumor

tag: microarray batch

tag: age at dx

value: mast

value: mixed

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc

tag: molecularsubtype byihc

value: LumA

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

value: med

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X217131666 [X59_M365]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence

value: LumB


title: FFPE X117941355 [X57_1034]

tag: microarray batch

tag: age at dx

value: lump

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X215484729 [X56_M362]

tag: tumor tumoradj

value: tumor-adjacent normal

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

value: low

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X215484729 [X55_M361]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X118191315 [X61_1038]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc

value: Basal

value: high


title: FFPE X214055032 [X54_M360]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

value: Normal

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X214055032 [X53_M359]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X217535324 [X49_M355]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X216756249 [X52_M358]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

value: Missing

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X217535324 [X50_M356]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X120987030 [X55_1032]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X121924083 [X53_1030]

tag: microarray batch

tag: age at dx

value: chemotx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X120532229 [X56_1033]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

value: hormtx

tag: recurrence


title: FFPE X115320753 [X92_103_FFPE_PLATE1]

tag: microarray batch

tag: age at dx

value: radiotx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X214796560 [X46_M352]

tag: tumor tumoradj

tag: cohort

value: unknown

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X211707972 [X47_M353]

value: tumor

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X215378216 [X117_M348]

tag: tumor tumoradj

tag: cohort

value: mast

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X114679447 [X52_1029]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X111386052 [X51_1028]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

value: mixed

tag: recurrence


title: FFPE X118837277 [X54_1031]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X115096078 [X50_1027]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

value: LumA

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X116881874 [X47_1024]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X114069471 [X49_1026]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X120988756 [X48_1025]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

value: med

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X221024390 [X43_M349]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence

value: LumB


title: FFPE X216663436 [X34_M339]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X215823211 [X28_M333]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X117714430 [X46_1023]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

value: lump

tag: treatment

tag: recurrence


title: FFPE X218689409 [X30_M335]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X215378216 [X42_M347]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X210869307 [X37_M342]

tag: tumor tumoradj

value: tumor-adjacent normal

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X215160347 [X40_M345]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc

value: low


title: FFPE X215823211 [X29_M334]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

value: Basal

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X214054439 [X38_M343]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X218689409 [X31_M336]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X213993451 [X26_M331]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X214796560 [X45_M351]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X122008518 [X45_1022]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc

value: high


title: FFPE X213128230 [X23_M328]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X213128230 [X22_M327]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X119719584 [X43_1020]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X218168844 [X126_M325]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X210869307 [X36_M341]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X214899689 [X32_M337]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X216663436 [X35_M340]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

value: Normal

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X115320753 [X90_102_FFPE_PLATE1]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X119903775 [X41_1018]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X214874650 [X24_M329]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X119542857 [X40_1017]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X112949536 [X44_1021]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc

value: Missing


title: FFPE X117094615 [X39_1016]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X112022376 [X36_1013]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X218168844 [X21_M326]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X217763666 [X9_M313]

tag: microarray batch

tag: age at dx

value: chemotx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X220763174 [X13_M317]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X221303925 [X18_M322]

tag: microarray batch

tag: age at dx

value: hormtx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X215401343 [X6_M309]

tag: tumor tumoradj

tag: cohort

value: radiotx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X221303925 [X17_M321]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X220763174 [X14_M318]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X214977573 [X19_M323]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X111686291 [X38_1015]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence

value: Unclassified


title: FFPE X115761012 [X35_1012]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X219991319 [X16_M320]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X216211238 [X171_M305]

value: tumor

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X210787815 [X8_M312]

tag: tumor tumoradj

tag: cohort

value: mast

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X210787815 [X2_M311]

tag: microarray batch

tag: age at dx

value: mixed

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X214977573 [X20_M324]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X115761012 [X34_1011]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc

value: LumA


title: FFPE X216211238 [X183_M306]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

value: med

tag: sample id


title: FFPE X217533520 [X147_M303]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence

value: LumB


title: FFPE X220481351 [X135_M302]

tag: tumor tumoradj

tag: cohort

value: unknown

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X217533520 [X159_M304]

value: tumor-adjacent normal

tag: microarray batch

tag: age at dx

value: lump

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X220481351 [X123_M301]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence

value: Basal


title: FFPE X110459353 [X33_1010]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X214253559 [X111_M300]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X214253559 [X99_M299]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence

value: low


title: FFPE X217763666 [X10_M314]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc

value: Normal


title: FFPE X110901127 [X37_1014]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

value: Missing

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X212022994 [X170_M297]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X119154006 [X88_101_FFPE_PLATE1]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X215295513 [X6_M286]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X220244419 [X8_M288]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X213066546 [X12_M293_.HTA.2_0]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X220712237 [X4_M284]

tag: microarray batch

tag: age at dx

value: chemotx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X220244419 [X7_M287]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X213322016 [X158_M296]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc

value: high


title: FFPE X212497815 [X9_M289]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X213322016 [X146_M295]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X215295513 [X5_M285]

tag: tumor tumoradj

tag: cohort

value: hormtx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X216892165 [X98_M291]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X220712237 [X3_M283]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X115307259 [X31_1008]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X113079156 [X28_1005]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X114645921 [X27_1004]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X218141892 [X48_M280]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X221221403 [X24_M278]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X214814814 [X60_M281]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X117822232 [X29_1006]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X121573481 [X26_1003]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X218141892 [X36_M279]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X221221403 [X12_M277]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X113368801 [X25_1002]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X111853277 [X24_1001]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence

value: Unclassified


title: FFPE X219449675 [X95_M276]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X119758716 [X86_1063]

tag: tumor tumoradj

value: tumor

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X212022994 [X182_M298]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

value: mast

tag: treatment

tag: recurrence


title: FFPE X219449675 [X83_M275]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X119644672 [X23_1000]

tag: microarray batch

tag: age at dx

value: mixed

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X119756809 [X30_1007]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X211030463 [X71_M274]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc

value: LumA


title: FFPE X119154006 [X86_100_FFPE_PLATE1]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

value: med

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X219791400 [X47_M272]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence

value: LumB


title: FFPE X117741745 [X89_1_FFPE_PLATE1]

tag: tumor tumoradj

tag: cohort

value: radiotx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X219791400 [X35_M271]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X218604631 [X23_M270]

tag: tumor tumoradj

value: tumor-adjacent normal

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

value: unknown

tag: treatment

tag: recurrence


title: FFPE X218604631 [X11_M269]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X215325984 [X82_M267]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X215325984 [X94_M268]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X214746319 [X58_M265]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X216973991 [X46_M264]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X212224002 [X81_M259]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X214746319 [X70_M266]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X216973991 [X34_M263]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X216029160 [X22_M262]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X212224002 [X93_M260]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X214532161 [X69_M258]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X214532161 [X57_M257]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X216029160 [X10_M261]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X218220369 [X45_M256]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

value: Basal

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X213467807 [X21_M254]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X213467807 [X9_M253]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc

value: low


title: FFPE X218220369 [X33_M255]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X211030463 [X59_M273]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X210079529 [X92_M252]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X210079529 [X80_M251]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X211577484 [X56_M249]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

value: lump

tag: treatment

tag: recurrence


title: FFPE X213467601 [X44_M248]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc

value: Normal


title: FFPE X216384319 [X8_M245]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X214995474 [X91_M244]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X214995474 [X79_M243]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X220447868 [X67_M242]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X213075445 [X43_M240]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

value: chemotx

tag: recurrence


title: FFPE X213075445 [X31_M239]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X212411723 [X19_M238]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

value: Missing

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X217480014 [X54_M233]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence

value: high


title: FFPE X218986015 [X42_M232]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X120087028 [X32_1009]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X212066224 [X6_M229]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X213591494 [X77_M227]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X211577484 [X68_M250]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X218986015 [X30_M231]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X216644324 [X65_M226]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X212066224 [X18_M230]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X213591494 [X89_M228]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X210348227 [X41_M224]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X216644324 [X53_M225]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X210348227 [X29_M223]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X215724411 [X17_M222]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X219801033 [X88_M220]

tag: tumor tumoradj

tag: cohort

value: hormtx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X215724411 [X5_M221]

value: tumor

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X219801033 [X76_M219]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X216384319 [X20_M246]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X214272877 [X64_M218]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X214272877 [X52_M217]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X213601030 [X40_M216]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X220447868 [X55_M241]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

value: mast

tag: treatment

tag: recurrence


title: FFPE X217480014 [X66_M234]

tag: tumor tumoradj

tag: cohort

value: mixed

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X212411723 [X7_M237]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

value: LumA

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X221476279 [X78_M235]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence

value: med


title: FFPE X213413231 [X87_M212]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X213601030 [X28_M215]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

value: LumB

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X211310900 [X4_M213]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X213413231 [X75_M211]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X215770632 [X63_M210]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X220486994 [X39_M208]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X211310900 [X16_M214]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X221617264 [X38_M200]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X210717966 [X86_M204]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X213118841 [X62_M202]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X221248658 [X15_M206]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X221248658 [X3_M205]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X220486994 [X27_M207]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X213118841 [X50_M201]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X218202468 [X14_M198]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X215770632 [X51_M209]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X218202468 [X2_M197]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X211660144 [X73_M195]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X221617264 [X26_M199]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X211660144 [X85_M196]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X218482758 [X61_M194]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X218482758 [X49_M193]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X217248416 [X25_M191]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X214147252 [X1_M189]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X214147252 [X13_M190]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X212080929 [X92_M186]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X216573947 [X94_M188]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X212080929 [X91_M185]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X216573947 [X93_M187]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X211465250 [X89_M183]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X212565068 [X85_M179]

tag: microarray batch

tag: age at dx

value: radiotx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X216572530 [X87_M181]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X217967296 [X83_M177]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X216572530 [X88_M182]

tag: tumor tumoradj

value: tumor-adjacent normal

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X217527533 [X81_M175]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X214272568 [X80_M174]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X216792257 [X74_M168]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X210717966 [X74_M203]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X216921946 [X77_M171]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X214272568 [X79_M173]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X218237417 [X71_M165]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X214889682 [X70_M164]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X214066559 [X66_M160]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X214889682 [X69_M163]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X210086315 [X67_M161]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X216921946 [X78_M172]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X216792257 [X73_M167]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X218237417 [X72_M166]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X210599913 [X76_M170]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X219242824 [X64_M158]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X214066559 [X65_M159]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X219242824 [X63_M157]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X214659639 [X62_M156_2]

tag: microarray batch

tag: age at dx

value: unknown

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X211465250 [X90_M184]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X220223400 [X60_M154]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X212565068 [X86_M180]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X220223400 [X59_M153]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X216871352 [X58_M152]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc

value: Basal


title: FFPE X217967296 [X84_M178]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X217527533 [X82_M176]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X216871352 [X57_M151]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X216637950 [X54_M148]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X219623035 [X55_M149]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X216637950 [X53_M147]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X221046214 [X49_M143]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X210142375 [X47_M141]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence

value: low


title: FFPE X218099035 [X51_M145]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X213966239 [X36_M130]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X213055740 [X34_M128]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

value: lump

tag: treatment

tag: recurrence


title: FFPE X213102180 [X45_M139]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X218099035 [X52_M146]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X216266304 [X28_M122]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X220093324 [X38_M132]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc

value: Normal


title: FFPE X215560912 [X30_M124]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X221046214 [X50_M144]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X213102180 [X46_M140]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X218848083 [X44_M138]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X220093324 [X37_M131]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X216266304 [X27_M121]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X214169791 [X42_M136]

tag: tumor tumoradj

tag: cohort

value: chemotx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X213966239 [X35_M129]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X218848083 [X43_M137]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X212683186 [X25_M119]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X210142375 [X48_M142]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X213055740 [X33_M127]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X215560912 [X29_M123]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X219623035 [X56_M150]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X214288090 [X23_M117]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X214288090 [X24_M118]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X212683186 [X26_M120]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X215818023 [X18_M112]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X219105794 [X39_M133]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X214169791 [X41_M135]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X219105794 [X40_M134]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X215818023 [X17_M111]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X210103970 [X13_M107]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X218323916 [X12_M106]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X220723455 [X16_M110]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X220723455 [X15_M109]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X217735243 [X10_M104]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X221348875 [X8_M102]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X218323916 [X11_M105]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X215467318 [X5_M99]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X216477544 [X3_M97]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X216477544 [X4_M98]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X221348875 [X7_M101]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X215467318 [X6_M100]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X221392674 [X2_M96]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X214152749 [X40_M88]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X210286234 [X44_M93]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X221392674 [X1_M95]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X210286234 [X47_M94]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X219774916 [X37_M85]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X212538886 [X35_M83]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X217662238 [X32_M80]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X214285802 [X43_M92]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X210485560 [X41_M89]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X214285802 [X42_M91]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X214152749 [X39_M87]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X212218633 [X34_M82]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X217662238 [X31_M79]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X217735243 [X9_M103]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X212218633 [X33_M81]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X217986311 [X29_M77]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X210122464 [X27_M75]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X210122464 [X28_M76]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X214901179 [X25_M73]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X211545659 [X24_M72]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X217986311 [X30_M78]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X214901179 [X26_M74]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X211545659 [X23_M71]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X212538886 [X36_M84]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X211508543 [X21_M69]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X211508543 [X22_M70]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X216197113 [X9_M57]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X215775554 [X11_M59]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X221466478 [X17_M65]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X219216411 [X8_M56]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X214997793 [X19_M67]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X214997793 [X20_M68]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X214928749 [X6_M54]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X215775554 [X12_M60]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X214928749 [X5_M53]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X219216411 [X7_M55]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X212895231 [X3_M51]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X212895231 [X4_M52]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X215259608 [X2_M50]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence

value: Missing


title: FFPE X215259608 [X1_M49]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X211096953 [X47_M47]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X216954570 [X45_M45]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X216954570 [X46_M46]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X211096953 [X48_M48]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

value: high

tag: sample id


title: FFPE X216615411 [X43_M43]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

value: hormtx

tag: recurrence


title: FFPE X213925103 [X42_M42]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X216615411 [X44_M44]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X214116226 [X35_M35]

tag: tumor tumoradj

value: tumor

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X213925103 [X41_M41]

tag: microarray batch

tag: age at dx

value: mast

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X218216810 [X34_M34]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X214116226 [X36_M36]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

value: mixed

tag: recurrence


title: FFPE X217975608 [X32_M32]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc

value: LumA


title: FFPE X218216810 [X33_M33]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

value: med

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X217975608 [X31_M31]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence

value: LumB


title: FFPE X210225908 [X30_M30]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X210225908 [X29_M29]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X221466478 [X18_M66]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X218462229 [X28_M28]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X221423538 [X24_M24]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X219719069 [X26_M26]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X221423538 [X23_M23]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X212484169 [X22_M22]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X218462229 [X27_M27]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X219719069 [X25_M25]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X218761463 [X40_M40]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X220491358 [X17_M17]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X212484169 [X21_M21]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X216717741 [X20_M20]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X216717741 [X19_M19]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X218761463 [X39_M39]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X220491358 [X18_M18]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X212266143 [X15_M15]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X212471868 [X14_M14]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X220773078 [X3_M3]

tag: tumor tumoradj

tag: cohort

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X212144417 [X7_M7]

tag: microarray batch

tag: age at dx

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: FFPE X210920548 [X9_M9]

tag: tumor tumoradj

tag: cohort

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc


title: FFPE X213426871 [X11_M11]

tag: microarray batch

tag: age at dx

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X212144417 [X8_M8]

tag: tumor tumoradj

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence


title: Scramble DRIPc-seq

status: Public on Jun 26 2018

type: SRA

city: Davis

first: Frederic

last: Chedin

state: CA

address: 1 Shields Avenue

department: MCB

institute: UC Davis

description:
RNA/DNA hybrids
wtB

library_source: genomic

data_processing:
Library strategy: DRIPc-seq
DRIP-seq, DRIPc-seq, RNA-seq, RNA Pol II ChIP-seq: All fastq files were trimmed with fastq-mcf before mapping.
DRIP-seq, DRIPc-seq, and RNA Pol II ChIP-seq: Trimmed fastq reads were mapped to hg19 using Bowtie2.1.0. RNA Pol II ChIP-seq peak calling was performed using macs14 1.4.2. DRIP-seq and DRIPc-seq peak calling were performed using HMM as described in methods.
RNA-seq: Trimmed fastq reads were mapped to hg19 using TopHat 2.0.5. Count table was generated using htseq-count using the "-m intersection-nonempty" option.
Genome_build: hg19
Supplementary_files_format_and_content: bigWig: binary of wiggle format, containing coordinate and aggregate signal of the data. tsv: RNA-seq count table as well as differential expression log2fold change and statistics, created by DESeq2

molecule: genomic DNA

source_name: Scramble, HEK293

extract_protocol:
Genomic DNA was extracted from HEK293 cell lines and fragmented using HindIII, EcoRI, BsrGI, XbaI and SspI. Monoclonal S9.6 antibody was used to enrich for RNA/DNA hybrids.
standard illumina protocol

tag: cell line

tag: genotype/variation

value: Scramble control

tag: antibody

value: Monoclonal S9.6


title: Control DRIPc-seq

description:
RNA/DNA hybrids
wtA

source_name: Control, HEK293

value: Control


title: FFPE X212471868 [X13_M13]

tag: microarray batch

tag: age at dx

value: unknown

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod


title: T8.TE.LCMV.D7.Sp#1

status: Public on Dec 15 2017

city: La Jolla

first: John

middle: Justin

last: Milner

address: 9500 Gilman Dr. MC0377

institute: UCSD

library_source: transcriptomic

data_processing:
Tophat
HT-Seq Count
DESeq from BioConductor
Genome_build: UCSC mm10
Supplementary_files_format_and_content: gct

organism: Mus musculus

source_name: D7 Spleen P14 KLRG1hiCD127lo

extract_protocol:
Total RNA was extracted in TRIZoL reagent
PrepX RNA-seq library preperation kit (Integenex)

tag: strain

tag: age

value: 6-16 Weeks

tag: tissue

value: Spleen


title: T8.TE.LCMV.D7.Sp#2


title: T8.MP.LCMV.D7.Sp#2

source_name: D7 Spleen P14 KLRG1loCD127hi


title: T8.TN.P14.Sp#2

source_name: Naïve P14


title: PLZFpos_adipose1

status: Public on May 10 2018

city: Be'er Sheva

first: Tal

last: Shay

address: Ben Gurion

department: Life scuences

country: Israel

institute: Ben-Gurion University

data_processing:
Reads were mapped to the mouse genome (mm10) using HISAT (0.1.6-beta release).
Bam files were sorted and indexed by SAMtools (1.2 release).
Merged transcriptome (constructed from all samplesthat went through sequencing, only the samples described in the paper are deposited here) was used as a reference annotation for quantification, normlalization and differential expression analysis.
Quantification and normalization were performed using CuffLinks (1.2 release), according to the Tuxedo pipeline.
Differentially expressed genes between PLZF+ and PLZF- γδ T cell subsets were identified using CuffDiff (false-discovery rate and adjusted p-value < 0.1).
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each analyzed γδ T cell comparison

source_name: γδ T cells

growth_protocol: Male mice were fed ad libitum and sacrificed between 16-22 weeks of age.

extract_protocol:
PLZF+ and PLZF- γδ T cells were sorted from adipose tissue of PLZFGFP mice using a FACSAria Fusion into 5µl of TCL buffer into a 96 well plate.
RNA libraries were prepared for sequencing using Illumina SMARTseq2 protocol

tag: gender

value: male

value: Epididymal adipose

value: 16-22 weeks


title: PLZFneg_adipose2


title: PLZFneg_adipose1


title: T8.TN.P14.Sp#1


title: T8.MP.LCMV.D7.Sp#1


title: FFPE X219151712 [X2_M2]

tag: tumor tumoradj

value: tumor-adjacent normal

tag: cohort

tag: dx year

tag: tumor size

tag: grade

tag: Stage

tag: surgery

tag: treatment

tag: recurrence

tag: rorptgroup modifiedmedianmethod

tag: rorptscore subgroupspecificmethod

tag: rorptgroup subgroupspecificmethod

tag: sample id


title: FFPE X220773078 [X4_M4]

tag: microarray batch

tag: age at dx

tag: recurrence months

tag: distant recurrence

tag: distant recurrence months

tag: er ihc

tag: pr ihc

tag: her2 ihc

tag: ki67 ihc

tag: molecularsubtype byihc

tag: proliferationscore modifiedmedianmethod

tag: rorptscore modifiedmedianmethod

value: low


title: PLZFpos_adipose2

tag: strain

tag: gender

tag: tissue

tag: age


title: ChIPseq_Scer_6408_Async_input_rep1

status: Public on Oct 25 2017

city: New York City

first: Matthew

middle: R

last: Paul

address: 1230 York Ave

department: Bioinformatics Resource Center

institute: Rockefeller University

data_processing:
ChIP-seq: mapping: Mapping was conducted using bowtie version 1.2 to the SK1 Liti version. Mapping parameters used are:-p 8 -q -m 1 -v 0 -S.
Chip-seq correction: Further processing was completed using MACS-2.1.0 (https://github.com/taoliu/MACS). Reads were extended towards 3’ ends to a final length of 200bp and probabilistically determined PCR duplications were removed. Pileups of both the input and ChIP libraries were SPMR-normalized (signal per million reads), followed by a calculation of the fold-enrichment of the ChIP data over the input data, resulting in the ChIP-coverage scores that are shown in the figures.
processed data files format and content: Bedgraph of ChIP profiles; ChIP peaks from MACS
Genome_build: SacCer3 (S. cerevisiae), SK1 (S. cerevisiae - Chip only: https://yjx1217.github.io/Yeast_PacBio_2016/welcome/),  WS220 (C. elegans) and  ASM294v2 (S. pombe)

organism: Saccharomyces cerevisiae

source_name: ChIPseq 6408 asynchronous input rep1

growth_protocol: Overnight cultures were prepared for cells. They were reseeded in the morning and grown to OD1.

extract_protocol:
ChIP-seq: Cells were fixed in 1% FA. DNA was sonicated down so the majority is 200-800bp. Samples were immunoprecipitated with 20μl anti-V5 agarose affinity gel
DNA was ligated to Illumina or home-made multiplexed adapters and amplified by PCR. For 3C-seq library DNA between 400-1Kb was gel purified. For ChIP Library DNA between 250-500 bp in size was gel purified.

treatment_protocol: Anchor-away samples were treated with 1ug/ml of rapamycin. Temperature-senstive strains were either shifted to 37C or maintained at 23C for 2 hrs.

value: 6408 - SMC4 tagged with Pk9

tag: treatment

value: Pk9 ChIP

value: 100% S. cerevisiae cells


title: ChIPseq_Scer_6408_Async_Pk9ChIP_rep1

source_name: ChIPseq 6408 asynchronous Pk9 ChIP rep1

value: 6409 - SMC4 tagged with Pk9


title: HKE293-D210N-Input-Rep2

status: Public on Oct 12 2017

city: Nanjing

first: Jia-Yu

last: Chen

address: No 163 of XianlinAvenue, Qixia District

department: School of Life Sciences

country: China

institute: Nanjing University

description: DNA

data_processing:
R-ChIP and GRO-seq sequence reads were mapped to the human genome (hg19) via default --local mode of Bowtie2
Repeatedly-mapped reads, reads with low mapping quality (-q 30 for R-ChIP and -q 2 for GRO-seq) and PCR duplicates were discarded according to Samtools
R-ChIP reads were extended to 150 nt (which corresponds to the average size of gel-isolated DNA fragments). We then used MACS2 with default settings to call narrow (or broad when necessary) R-loop peaks. Only confident R-loop peaks with ≥5 folds enrichment and with q-value ≤ 0.001 (or 0.0001 for broad peak) over background were kept for subsequent analyses. GRO-seq reads were extended to 90 nt and were used to estimate the expression level. The expression level in promoter proximal regions was quantified as RPKM in the region -30 to +300 bp from TSS, while the overall gene expression level was defined as RPKM in the downstream region from +300 bp of TSS to gene end.
Genome_build: hg19
Supplementary_files_format_and_content: bigWig file

growth_protocol: HEK293T cells were grown in DMEM supplemented with 10% FBS and 1X penicillin-streptomycin; K562 cells were cultured in RPMI1640 with 10% FBS, 2mM sodium pyruvate and 1X penicillin-streptomycin.

extract_protocol:
For R-ChIP, cells expressing mutant RNASEH1 were fixed followed by nuclei extraction. Chromatin DNA was sheared to 250-600 bp in size by sonication followed by incubation with magnetic beads conjugated with anti-V5 antibody overnight at 4°C. Beads were sequentially washed in high salt buffers to remove non-specifically bound protein and chromtin complexes. The enriched RNASEH1-RNA/DNA complex was eluted and decrosslinked overnight at 65°C. After sequential RNase A and Proteinase K treatment, the precipitated hybrid was cleaned by phenol and phenol:chloroform:isoamyl alcohol, followed by ethanol precipitation. The recovered fragment was subjected to library construction. For GRO-seq, the intact nuclei were extracted and mixed with run-on reaction buffer (10 mM Tris-HCl, pH 8.0, 5 mM MgCl2, 300 mM KCl, 1 mM DTT, 200 U/ml RNaseOut, 1% Sarkosyl, 500 μM ATP, 500 μM GTP, 500 μM Br-UTP and 2 μM CTP) for in vitro run-on reaction and Br-U labeling for 5 min at 30°C. The reaction was stopped by adding TRIzol LS reagent (Thermo Fisher). RNA was then extracted followed by treatment wtih DNase I (Promega) and antarctic phosphatase (NEB). For immunopurification, equilibrated and blocked anti-BrdU agarose beads (Santa Cruz) were mixed with RNA for 1 hr at 4°C. After binding, beads were thoroughly washed and BrU-incorporated RNAs were eluted. The BrU-RNA end was repaired by T4 PNK (NEB) and then subjected to poly-A tailing reaction. Tailed RNAs were reverse transcribed into cDNA by using superscript III (Thermo Fisher) and the GRO-seq RT primer (5’-pAGATCGGAAGAGCGTCGTGTAG;GCAGAAGACGGCATACGAGATTTTTTTTTTTTTTTTTTTTVN-3’), where p indicates 5’ phosphate; ‘;’ indicates the abasic dSpacer furan, and VN indicates degenerate nucleotides. The cDNA products were treated with Exonuclease I (NEB) for 1 hr at 37°C to eliminate excessive primer. The resultant cDNA was resolved in 10% polyacrylamide TBE-urea gel and the fraction in the size range of 100-400 bp was excised and recovered.
For R-ChIP library construction, DNA from precipitated RNA/DNA hybrids was used as the template to generate dsDNA by random priming using a tail-containing N9 primer (5’- /invddt/CAAGCAGAAGACGGCATACGAGNNNNNNNNN-3’). An “A” base was then added to the 3’ end and the standard Illumina adaptor was ligated to one end of the resultant dsDNA. After purification,PCR were performed and the libraries in the size range of 130-350 bp were gel-isolated and purified. For GRO-seq library construction, cDNA was circularized and re-linearized. the libraries were amplified by PCR reaction. the final products were resolved in a non-denaturing 10% polyacrylamide TBE gel and libraries with the size 130-250 bp were recovered.
R-ChIP and GRO-seq

treatment_protocol: DRB (100 mM) was added to the medium to the final concentration of 100 μM. Cells were incubated for 2 hrs. To wash off DRB, the DRB-containing medium was aspirated, followed by washing with PBS. Fresh medium was then added and the cells were incubated for 30 min before harvest.

tag: rnaseh mutant


title: HKE293-D210N-Input-Rep3

description: DNA


title: HKE293-D210N-V5ChIP-Rep3

description: RNA-DNA hybird

tag: antibody


title: ChIPseq_Scer_6408_Async_Pk9ChIP_rep2

source_name: ChIPseq 6408 asynchronous Pk9 ChIP rep2

value: 6411 - SMC4 tagged with Pk9


title: ChIPseq_Scer_6408_Async_input_rep2

source_name: ChIPseq 6408 asynchronous input rep2

value: 6410 - SMC4 tagged with Pk9


title: HKE293-D210N-V5ChIP-Rep2

description: RNA-DNA hybird


title: HKE293-D210N-V5ChIP-Rep1

description: RNA-DNA hybird


title: HKE293-D210N-Input-Rep1

description: DNA