title: stembase_DXC_45hai_rep1

description: Gene expression data from stem base of DXC line 45 h after dexamethasone treatment

source_name: stem base, DXC line, 45hour after dexamethasone treatment


title: stembase_DXC_42hai_rep1

status: Public on Aug 27 2020

type: RNA

city: Montpellier

first: Pascal

last: Gantet

address: Avenue Agropolis

department: IRD

country: France

institute: Université Montpellier 2

description: Gene expression data from stem base of DXC line 42 h after dexamethasone treatment

hyb_protocol: Following fragmentation and biotin end labeling, 3,8 ug of cDNA were hybridized for 20h at 48C° on Affymetrix® Rice Gene 1.1ST Jp array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 of Affymetrix GeneAtlas system using Hybridization, Wash & Stain kit.

scan_protocol: GeneChips were scanned using the Affymetrix GeneAtlas Scanner.

data_processing: Data were generated with Affymetrix Epression Console v 1.4.1 and GCRMA algorithm.

label: biotin

molecule: total RNA

organism: Oryza sativa Japonica Group

source_name: stem base, DXC line, 42hour after dexamethasone treatment

label_protocol: Biotinylated single strand cDNA were prepared according to the Affymetrix WT PLUS protocol from 200 ng total RNA (WT PLUSTechnical Manual, 2010 - 2012, P/N 702935 Rev4 Affymetrix).

growth_protocol: Oryza sativa L. cv. Taichung 65 crl1 mutant (Inukai et al. 2005) was transformed with a binary vector pINDEX2 (Ouwerkerk et al., 2001, Planta 213, 370-378) empty or containing the CRL1 gene (Os03g0149100) to generate DX and DXC lines respectively as described in Coudert et al., 2015 New Phytol 206(1):243-54. The line DXC corresponds to line DXC3 in Coudert et al., 2015, 206(1):243-54). Seeds were dehulled and disinfected (3 min in ethanol 70%, 90 min in 2:3 v/v sodium hypochlorite 9,6%/Milli-Q water plus 500 µL Tween 80, quadruple rinsed in Milli-Q water) and inoculated under sterile conditions in round Petri dishes (ref. 82.1473.001, Starstedt, Germany) containing a filter pad (ref. 1001-090, Whatman paper, GE Healthcare, UK) and 15 mL half strength Murashige and Skoog (MS/2) medium (ref. M0231, Duchefa Biochemie, The Netherlands). Culture chambers were set at 27°C, 70% relative humidity, and 14 hour daylight. After 5 days, the plantlets were transferred into 250 mL wide-collar Erlenmeyer flasks containing 30 mL MS/2 medium, and let to rest for 24 hour.

extract_protocol: Stem bases were collected every 3 hour from 0 to 45 hour after adition of dexamethasone in the medium (hours after induction, hai), according to Coudert et al., 2011, BMC Genomics, 12, e387. The experiment was repeated independently three times with DX and DXC lines. For each biological replicate, ten to fifteen stem bases were collected and immediately frozen in liquid nitrogen. After grounding 8~12 stem bases in liquid nitrogen using a TissueLyser II tissue disruption system (Qiagen, The Netherlands) with 3 mm steel beads for 15 sec at 30 Hz, RNA were extracted using the Plant RNeasy Kit (Qiagen, The Netherlands) with DNAse I treatment (Qiagen) on purification column according to the supplier’s recommendations.

treatment_protocol: Plantlets were treated by adding dexamethasone (DEX) (ref. D4902, Sigma-Aldrich, MO, USA) diluted in absolute ethanol, to obtain a final concentration of 1 µM. After 5 hour, DEX was removed by replacing the culture  medium with a fresh one.

tag: tissue

value: stem base

tag: genotype

value: cv Taichung 65, crl1 mutant

tag: line

value: DXC

tag: hour after induction


title: 14dWT_1

type: SRA

city: Bethesda

first: Matthew

middle: J

last: Brooks

state: MD

address: 6 Center Dr Bldg 6, Rm 303

department: NEI

country: USA

institute: NIH

description: 14 day wildtype larva replicate 1

library_source: transcriptomic

data_processing:
Fastq files were generated from reads passing chastity filter and used for further analysis. Illumina adapter, polyA, and polyT sequence trimming was performed with Trimmomatic v0.36.
Transcript level quantitation was performed using Kallisto v0.43.0 employing a transcript cDNA FASTA file called GCF_000002035.5_GRCz10_rna.fna downloaded from the NCBI site. Gene level quantification was generated by summarization of the transcript level quantitation using tximport v0.99.9 with the option “countFromAbundance=lengthScaledTPM” using a transcript to gene data.frame generated from GCF_000002035.5_GRCz10_genomic.gff file . The gene level count values were TMM normalized and converted to count per million (CPM) via edgeR.
Genome_build: GCF_000002035.5_GRCz10 using NCBI annotation

molecule: polyA RNA

organism: Danio rerio

source_name: 14 day wildtype larva

growth_protocol: Embryos were collected and staged to appropriate timepoint at 28.5C. Larva were fed and maintained according to SOP regulations in animal facility

extract_protocol:
RNA from embryos/tissues was extracted using TRIzol.
Directional RNA-seq library construction was performed from 100 ng of high quality RNA (RIN > 8.0) using the Illumina Stranded mRNA Library Prep Kit (Illumina). Library construction from three biological replicates for all time points was performed.

tag: genotype/variation

value: wildtype

tag: age

value: 14 day

value: larva


title: PulseChase_exp_uhrf1_fl_01_GFPpositive_TomatoPositive (RNA-seq)

city: Chicago

first: Benjamin

middle: D.

last: Singer

state: Illinois

address: 303 E. Superior St., Simpson Querrey 5th floor

institute: Northwestern University Feinberg School of Medicine

data_processing:
Basecalls performed using Illumina RTA2 software.
BCL2FASTQ v2.17.1.14 was used to convert bcl files to fastq files (default parameters).
Fastq files were aligned to the mm10 reference genome using Tophat v.2.1.0, and SeqMonk v1.45.4 was used to generate gene and transcript expression levels for protein-coding genes.
Genome_build: GRCm38/mm10
Supplementary_files_format_and_content: Tab-delimited text file including raw counts values for each sample generated for uniquely mapped reads over exons was obtained using SeqMonk v1.45.4.

organism: Mus musculus

extract_protocol:
RNA was extracted from FACSorted cells using the AllPrep DNA/RNA Micro Kit.
SMARTer Stranded Total RNA-Seq Kit v2 (Takara)

tag: cell type

value: Treg cells


title: 9dM_3

description: 9 day kctd15 mutant larva replicate 3

source_name: 9 day kctd15 mutant larva

value: kctd15 mutant

value: 9 day


title: C11.GAL4.SS3hr.56564

city: Philadelphia

first: Allan

middle: I

last: Pack

address: 125 South 31st St

institute: University of Pennsylvania

data_processing:
RNA-Seq data were aligned to the mouse genome build mm9 by STAR-v2.5.3a.
Data were quantified using PORT quantification script. The code is available at https://github.com/itmat/Normalization (PORT-v0.8.4-beta)
Genome_build: mm9
Supplementary_files_format_and_content: tab-delimited text file from gene-level contains counts from unique reads that only map to one gene.

source_name: eGFP expressing galanin neurons isolated from VLPO using LCM

growth_protocol: Experiments were performed on male Tg(Gal-EGFP)HX109Gsat mice at 2-4 months housed individually in a 12/12 light/dark room.

extract_protocol:
After cervical dislocation the brains were quickly removed and 3mm coronal section containing VLPO region was cut and post-fixed in ice-cold 4% paraformaldehyde (pH 7.4) for 5 minutes. 10 μm frozen sections were generated with cryostat and GFP+ cells were isolated using LCM. Total RNA was extracted using RNAqueous-Micro kit (Invitrogen).
Total RNA from each sample was prepared for sequencing using theTakara Bio, SMARTer® Stranded Total RNA-Seq Kit v2 - Pico Input Mammalian. 1 ng of RNA was used to prepare the RNA libraries. The libraries were sequenced on Illumina HiSeq 4000. Depths of 23-36 million paired-end 150bp reads were generated for each sample.

treatment_protocol: Half of the mice were sleep deprived for various of durations using gentle handling

tag: behavior

value: SS

tag: timepoint

value: VLPO

value: eGFP expressing galanin neurons


title: PulseChase_exp_uhrf1_fl_01_GFPpositive_TomatoNegative (RNA-seq)


title: C10.GAL22.0h.56559

value: baseline


title: stembase_DX_3hai_rep2

description: Gene expression data from stem base of DX line 3 h after dexamethasone treatment

source_name: stem base, DX line, 3hour after dexamethasone treatment

value: DX


title: PulseChase_exp_uhrf1_fl_01_GFPnegative_TomatoPositive (RNA-seq)

source_name: ex-Foxp3 cells (Foxp3-GFP–tdTomato+)

value: ex-Foxp3 cells


title: stembase_DXC_39hai_rep1

description: Gene expression data from stem base of DXC line 39 h after dexamethasone treatment

source_name: stem base, DXC line, 39hour after dexamethasone treatment


title: C9.GAL72.SD12hr.56554

value: SD


title: D3.GAL9.SS9hr.56522


title: stembase_DXC_36hai_rep1

description: Gene expression data from stem base of DXC line 36 h after dexamethasone treatment

source_name: stem base, DXC line, 36hour after dexamethasone treatment


title: 9dM_1

description: 9 day kctd15 mutant larva replicate 1


title: PulseChase_exp_control_05_GFPpositive_TomatoPositive (RNA-seq)


title: 9dWT_3

description: 9 day wildtype larva replicate 3

source_name: 9 day wildtype larva


title: PulseChase_exp_control_05_GFPpositive_TomatoNegative (RNA-seq)


title: PulseChase_exp_control_05_GFPnegative_TomatoPositive (RNA-seq)


title: D2.GAL13.SS6hr.56516


title: stembase_DXC_27hai_rep1

description: Gene expression data from stem base of DXC line 27 h after dexamethasone treatment

source_name: stem base, DXC line, 27hour after dexamethasone treatment


title: stembase_DXC_33hai_rep1

description: Gene expression data from stem base of DXC line 33 h after dexamethasone treatment

source_name: stem base, DXC line, 33hour after dexamethasone treatment


title: stembase_DXC_30hai_rep1

description: Gene expression data from stem base of DXC line 30 h after dexamethasone treatment

source_name: stem base, DXC line, 30hour after dexamethasone treatment


title: C6.GAL31.SD3hr.56539


title: PulseChase_exp_control_04_GFPpositive_TomatoPositive (RNA-seq)


title: 9dM_2

description: 9 day kctd15 mutant larva replicate 2


title: C5.GAL54.SS12hr.56533


title: PulseChase_exp_control_04_GFPpositive_TomatoNegative (RNA-seq)


title: stembase_DXC_24hai_rep1

description: Gene expression data from stem base of DXC line 24 h after dexamethasone treatment

source_name: stem base, DXC line, 24hour after dexamethasone treatment


title: 5dM_3

description: 5 day kctd15 mutant larva replicate 3

source_name: 5 day kctd15 mutant larva

value: 5 day


title: 5dM_2

description: 5 day kctd15 mutant larva replicate 2


title: C8.GAL40.SD9hr.56549


title: C4.GAL7.SS9hr.56527


title: 5dM_1

description: 5 day kctd15 mutant larva replicate 1


title: PulseChase_exp_control_03_GFPpositive_TomatoPositive (RNA-seq)


title: PulseChase_exp_control_04_GFPnegative_TomatoPositive (RNA-seq)


title: C7.GAL35.SD6hr.56544


title: C3.GAL12.SS6hr.56521


title: 5dWT_3

description: 5 day wildtype larva replicate 3

source_name: 5 day wildtype larva


title: 9dWT_2

description: 9 day wildtype larva replicate 2


title: stembase_DXC_21hai_rep1

description: Gene expression data from stem base of DXC line 21 h after dexamethasone treatment

source_name: stem base, DXC line, 21hour after dexamethasone treatment

value: stem base


title: C2.GAL3.SS3hr.56515


title: 9dWT_1

description: 9 day wildtype larva replicate 1


title: stembase_DXC_15hai_rep1

description: Gene expression data from stem base of DXC line 15 h after dexamethasone treatment

source_name: stem base, DXC line, 15hour after dexamethasone treatment

value: cv Taichung 65, crl1 mutant


title: stembase_DXC_18hai_rep1

description: Gene expression data from stem base of DXC line 18 h after dexamethasone treatment

source_name: stem base, DXC line, 18hour after dexamethasone treatment

value: DXC


title: PulseChase_exp_control_03_GFPpositive_TomatoNegative (RNA-seq)


title: B11.GAL21.0h.56563


title: stembase_DXC_12hai_rep1

description: Gene expression data from stem base of DXC line 12 h after dexamethasone treatment

source_name: stem base, DXC line, 12hour after dexamethasone treatment


title: PulseChase_exp_control_03_GFPnegative_TomatoPositive (RNA-seq)


title: 5dWT_2

description: 5 day wildtype larva replicate 2

value: wildtype


title: 5dWT_1

description: 5 day wildtype larva replicate 1


title: stembase_DXC_9hai_rep1

description: Gene expression data from stem base of DXC line 9 h after dexamethasone treatment

source_name: stem base, DXC line, 9hour after dexamethasone treatment


title: PulseChase_exp_control_02_GFPpositive_TomatoPositive (RNA-seq)


title: B9.GAL39.SD9hr.56553

source_name: eGFP expressing galanin neurons isolated from VLPO using LCM


title: PulseChase_exp_control_03_GFPnegative_TomatoPositive (RRBS

library_source: genomic

data_processing:
Basecalls performed using Illumina RTA2 software.
Indexed samples were demultiplexed to fastq files with BCL2FASTQ v2.17.1.14.
Reads were  trimmed of 10 base pairs from the 5’ end with TrimGalore! v0.4.3 to remove primer and adapter sequences.
Sequence alignment to the GRCm38/mm10 reference genome and methylation extraction ignoring 1 base at the 3’ end (after reviewing the M-bias plots) were performed with Bismark v0.16.3.
Genome_build: GRCm38/mm10
Supplementary_files_format_and_content: Bismark tab-delimited "coverage" files for cytosines in CpG context with the following columns: <chromosome> <start position> <end position> <methylation percentage> <count methylated> <count unmethylated>

molecule: genomic DNA

extract_protocol:
Genomic DNA was extracted from FACSorted cells using the AllPrep DNA/RNA Micro Kit.
Genomic DNA was quantified with a Qubit 3.0 instrument. Genomic DNA was then digested with the restriction endonuclease MspI (New England BioLabs). Resulting fragments underwent size selection for fragments ~100-250-bp in length using SPRI beads (MagBio Genomics) and subsequent bisulfite conversion using the EZ DNA Methylation-Lightning Kit (Zymo Research) per the manufacturer’s protocol. Bisulfite conversion efficiency averaged 99.5% as estimated by the measured percent of unmethylated CpGs in λ-bacteriophage DNA (New England BioLabs N3013S) added at a 1:200 ratio to each sample. Libraries for Illumina-based sequencing were prepared with the Pico Methyl-Seq Library Prep Kit (Zymo Research) using Illumina TruSeq DNA methylation barcodes. Libraries were run on a High Sensitivity chip using an Agilent TapeStation 4200 to assess size distribution and overall quality of the amplified library. Fluorometric quantitation and TapeStation size distribution estimates permitted equimolar pooling, and six pooled libraries per run were sequenced on an Illumina NextSeq 500 instrument using the NextSeq 500/550 V2 High Output reagent kit (1 x 75 cycles).


title: B10.GAL47.SD12hr.56558


title: PulseChase_exp_control_02_GFPpositive_TomatoNegative (RNA-seq)


title: stembase_DXC_6hai_rep1

description: Gene expression data from stem base of DXC line 6 h after dexamethasone treatment

source_name: stem base, DXC line, 6hour after dexamethasone treatment


title: B8.GAL34.SD6hr.56548


title: 2dM_1

description: 2 day kctd15 mutant embryos replicate 1

source_name: 2 day kctd15 mutant embryos

value: 2 day

value: embryos


title: PulseChase_exp_control_01_GFPpositive_TomatoPositive (RNA-seq)

value: Treg cells


title: PulseChase_exp_control_02_GFPnegative_TomatoPositive (RNA-seq)

source_name: ex-Foxp3 cells (Foxp3-GFP–tdTomato+)


title: 2dWT_3

description: 2 day wildtype embryos replicate 3

source_name: 2 day wildtype embryos


title: PulseChase_exp_control_01_GFPpositive_TomatoNegative (RNA-seq)


title: B6.GAL53.SS12hr.56538


title: B7.GAL30.SD3hr.56543


title: 2dWT_2

description: 2 day wildtype embryos replicate 2


title: stembase_DXC_3hai_rep1

description: Gene expression data from stem base of DXC line 3 h after dexamethasone treatment

source_name: stem base, DXC line, 3hour after dexamethasone treatment


title: B5.GAL6.SS9hr.56532


title: stembase_DX_45hai_rep1

description: Gene expression data from stem base of DX line 45 h after dexamethasone treatment

source_name: stem base, DX line, 45hour after dexamethasone treatment


title: 2dWT_1

description: 2 day wildtype embryos replicate 1


title: B4.GAL11.SS6hr.56526


title: 2dM_3

description: 2 day kctd15 mutant embryos replicate 3

value: kctd15 mutant


title: stembase_DXC_0hai_rep1

description: Gene expression data from stem base of DXC line 0 h after dexamethasone treatment

source_name: stem base, DXC line, 0hour after dexamethasone treatment


title: Chimera_exp_uhrf1_chimera_04 (RNA-seq)

source_name: Treg cells (CD25hiFoxp3-YFP+)


title: PulseChase_exp_control_01_GFPnegative_TomatoPositive (RNA-seq)


title: B3.GAL2.SS3hr.56520


title: stembase_DX_36hai_rep1

description: Gene expression data from stem base of DX line 36 h after dexamethasone treatment

source_name: stem base, DX line, 36hour after dexamethasone treatment


title: Chimera_exp_uhrf1_chimera_03 (RNA-seq)


title: stembase_DX_39hai_rep1

description: Gene expression data from stem base of DX line 39 h after dexamethasone treatment

source_name: stem base, DX line, 39hour after dexamethasone treatment


title: 2dM_2

description: 2 day kctd15 mutant embryos replicate 2


title: B2.GAL20.0h.56514


title: Chimera_exp_uhrf1_chimera_02 (RNA-seq)


title: stembase_DX_33hai_rep1

description: Gene expression data from stem base of DX line 33 h after dexamethasone treatment

source_name: stem base, DX line, 33hour after dexamethasone treatment


title: stembase_DX_30hai_rep1

description: Gene expression data from stem base of DX line 30 h after dexamethasone treatment

source_name: stem base, DX line, 30hour after dexamethasone treatment


title: Chimera_exp_control_04 (RNA-seq)

value: Uhrf1+/+Foxp3YFP-Cre/YFP-Cre (control)


title: Chimera_exp_uhrf1_chimera_01 (RNA-seq)


title: stembase_DX_42hai_rep1

description: Gene expression data from stem base of DX line 42 h after dexamethasone treatment

source_name: stem base, DX line, 42hour after dexamethasone treatment


title: L-PCa5

city: Shijiazhuang

first: Zhan

last: Yang

state: Hebei

address: 215 Heping W Rd

country: China

institute: The Second Hospital of Hebei Medical University

description: circular RNA

hyb_protocol: 1 μg of each labeled cRNA was fragmented by adding 5 μl 10 × Blocking Agent and 1 μl of 25 × Fragmentation Buffer, then heated the mixture at 60 °C for 30 min, finally 25 μl 2 × Hybridization buffer was added to dilute the labeled cRNA. 50 μl of hybridization solution was dispensed into the gasket slide and assembled to the circRNA expression microarray slide. The slides were incubated for 17 hours at 65°C in an Agilent Hybridization Oven.

scan_protocol: After washing, slides were scanned with the Agilent Scanner G2505C. Scanned images were imported into Agilent Feature Extraction software for raw data extraction.

data_processing: Agilent Feature Extraction software (version 11.0.1.1) was used to analyze acquired array images. Quantile normalization and subsequent data processing were performed using the R software limma package. Differentially expressed circRNAs with statistical significance between two groups were identified through Volcano Plot filtering. Differentially expressed circRNAs between two samples were identified through Fold Change filtering. Hierarchical Clustering was performed to show the distinguishable circRNAs expression pattern among samples.

organism: Homo sapiens

source_name: prostate cancer Gleason<6

label_protocol: Sample labeling and array hybridization were performed according to the manufacturer’s protocol (Arraystar Inc.). Briefly, total RNAs were digested with Rnase R (Epicentre, Inc.) to remove linear RNAs and enrich circular RNAs. Then, the enriched circular RNAs were amplified and transcribed into fluorescent cRNA utilizing a random priming method (Arraystar Super RNA Labeling Kit; Arraystar). The labeled cRNAs were purified by RNeasy Mini Kit (Qiagen). The concentration and specific activity of the labeled cRNAs (pmol Cy3/μg cRNA) were measured by NanoDrop ND-1000.

extract_protocol: RNA extraction was performed with the miRNeasy Mini Kit (217004; Qiagen) according to the manufacturer's instructions. The purity and concentration of total RNA samples were determined with NanoDrop ND-1000. Results were provided in Sample QC report.

treatment_protocol: Place a freshly dissected cross-section prostate tissue (5mm thick) on to a pre-labeled tissue base mold. Cover the entire tissue block with Surgipath FSC 22 Frozen Section Embedding Medium (Leica). Slowly place the base mold containing the tissue block into liquid nitrogen till the entire tissue block is submerged into liquid nitrogen to ensure tissue is frozen completely. Store the frozen tissue block at -80°C until ready for sectioning. Transfer the frozen tissue block to a cryotome cryostat (-20 °C) prior to sectioning and allow the temperature of the frozen tissue block to equilibrate to the temperature of the cryotome cryostat. Section the frozen tissue block into 8 μm using the cryotome.Place the tissue sections onto glass slides suitable for HE staining and  immunohistochemistry.The tissue specimens were confirmed by two experienced pathologists. Pathological grading was judged by Gleason points-scoring system, Gleason score ≥8 and Gleason score <8.

value: prostate cancer

tag: gender

value: male


title: Chimera_exp_control_03 (RNA-seq)


title: Chimera_exp_control_02 (RNA-seq)


title: Chimera_exp_control_01 (RNA-seq)


title: L-PCa3

description: circular RNA


title: L-PCa2

description: circular RNA


title: L-PCa1

description: circular RNA


title: L-PCa4

description: circular RNA


title: stembase_DX_24hai_rep1

description: Gene expression data from stem base of DX line 24 h after dexamethasone treatment

source_name: stem base, DX line, 24hour after dexamethasone treatment


title: H-PCa5

description: circular RNA

source_name: prostate cancer Gleason>8


title: stembase_DX_18hai_rep1

description: Gene expression data from stem base of DX line 18 h after dexamethasone treatment

source_name: stem base, DX line, 18hour after dexamethasone treatment


title: mutant dopaminergic [F6_pid1143]

city: Seattle

first: James

middle: William

last: MacDonald

state: WA

address: 4225 Roosevelt Way NE

department: Environmental and Occupational Health Sciences

institute: University of Washington

description: Gene expression data for mutant dopaminergic

hyb_protocol: Encore Biotin Module (Nugen Inc.)

scan_protocol: Arrays were washed and stained on GeneChip Fluidics Station 450 using FS450_0002 protocol. Arrays were then scanned using Affymetrix GeneChip Scanner 7G Plus. Samples and arrays were tracked, washed, scanned and images were acquired and processed using GeneChip Command Console Software (AGCC) (Affymetrix).

data_processing: Raw chip data were normalized and summarized using a robust multi-array averaging as implemented in the Bioconductor Affy-package [12]. The data were fit using a weighted analysis of variance (ANOVA) model. By using weights in the ANOVA model, we could account for sample heterogeneity without having to exclude samples. This weighting scheme has been previously described, and shown to be superior to excluding samples using both real and simulated data .

organism: Drosophila melanogaster

source_name: brain

label_protocol: Encore Biotin Module (Nugen Inc.)

growth_protocol: All Drosophila strains were maintained on standard cornmeal/molasses medium at 25oC with a 12-hour light-dark cycle.

extract_protocol: We utilized the Ovation One Direct Kit and Encore Biotin Module (Nugen Inc.) for synthesis, amplification, fragmentation and labeling of cDNA from our total RNA samples according to the manufacturers protocol. cDNA quality was analyzed by Bioanalyzer profiling prior to array hybridization. cDNA was hybridized to Affymetrix Drosophila 2.0 arrays.

treatment_protocol: At least 15 adult Drosophila brains were dissected and the brains dissociated as described previously (Burman et al., 2012), except that we did not add DAPI or mitochondrial membrane potential dependent dye's to ensure that these chemicals did not interfere with subsequent lysis and amplification steps of neuronal RNA. In addition, all steps of the dissection and FACS were conducted on ice or at 4oC to help maintain RNA integrity. Briefly at least 15 brains were dissected were placed into 1ml of DME/Ham's F-12 High Glucose media (Irvine Scientific) supplemented with 20 mM HEPES (Sigma), 2.5 mM glutamine (Sigma) and 0.5% Trypsin (Invitrogen), and mechanically dissociated by passage 30 times through a p200 pipette tip at room temperature. The cell suspension was then incubated at 37oC for 45 minutes, with three additional pipetting steps executed at 15 minute intervals. The cell suspension was then triturated ten times through a 15-45% SurfaSil (Fisher) coated glass-flamed Pasteur pipette, and passed through a 70 mm mesh cell strainer (Fisher). FACS was performed using a BD FACS Aria II cell sorter equipped with a 488nm laser for detection of GFP. Cells were sorted directly into 96 well plates with 5 ul of Nugen One Dirct lysis buffer. For all conditions 115 neurons were isolated for microarray analysis.

value: brain

tag: neurons

value: dopaminergic

value: mutant


title: stembase_DX_21hai_rep1

description: Gene expression data from stem base of DX line 21 h after dexamethasone treatment

source_name: stem base, DX line, 21hour after dexamethasone treatment

value: DX


title: mutant dopaminergic [E2_pid1143]


title: cholinergic control [E3_pid1143]

description: Gene expression data for cholinergic control

value: cholinergic

value: control


title: H-PCa4

description: circular RNA


title: control dopaminergic [E1_pid1143]

description: Gene expression data for control dopaminergic


title: H-PCa3

description: circular RNA


title: cholinergic mutant [E4_pid1143]

description: Gene expression data for cholinergic mutant


title: stembase_DX_6hai_rep1

description: Gene expression data from stem base of DX line 6 h after dexamethasone treatment

source_name: stem base, DX line, 6hour after dexamethasone treatment

value: stem base


title: stembase_DX_15hai_rep1

description: Gene expression data from stem base of DX line 15 h after dexamethasone treatment

source_name: stem base, DX line, 15hour after dexamethasone treatment

value: cv Taichung 65, crl1 mutant


title: stembase_DX_27hai_rep1

description: Gene expression data from stem base of DX line 27 h after dexamethasone treatment

source_name: stem base, DX line, 27hour after dexamethasone treatment


title: stembase_DX_9hai_rep1

description: Gene expression data from stem base of DX line 9 h after dexamethasone treatment

source_name: stem base, DX line, 9hour after dexamethasone treatment


title: stembase_DX_12hai_rep1

description: Gene expression data from stem base of DX line 12 h after dexamethasone treatment

source_name: stem base, DX line, 12hour after dexamethasone treatment


title: H-PCa2

description: circular RNA


title: cholinergic mutant [E6_pid1143]


title: 118-siTIMP1

city: bunkyo

first: Masayo

last: Aoki

state: tokyo

address: 1-1-5 Sendagi

department: Plastic Surgery

country: Japan

institute: Nippon Medical School

hyb_protocol: Agilent one-color gene expression hyb/wash protocol

scan_protocol: Microarray slides were scanned in an Agilent Technologies G2600D Microarray Scanner at 3 micron resolution.

data_processing: The scanned images were analyzed with Feature Extraction Software 11.5.1.1(Agilent) using default parameters to obtain background subtracted and spatially detrended Processed Signal intensities.  Features flagged in Feature Extraction as Feature Non-uniform outliers were excluded.

source_name: Mouse dermal fibroblasts

label_protocol: Agilent Low Input Quick Amp Labeling Kit, one-color labeling protocol

growth_protocol: cells were kept in medium with 2% Fetal calf serum

extract_protocol: Total RNA extracted using RNeasy Mini Kit following manufacturer's instructions

treatment_protocol: cells were trasnfected with siControl or siTIMP1 using sCA

tag: cell line

value: Mouse dermal fibroblasts


title: Embryo_YTHDF2-KD_rep2

city: Nanjing

first: Mingtian

last: Deng

state: Jiangsu

address: Weigang No.1

department: College of Animal Science and Technology

institute: Nanjing Agricultural University

data_processing:
Illumina Casava1.7 software used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to ARS1 whole genome using Hisat2 with defult parameters
Count were generated using htseq-count, Reads Per Kilobase of exon model per Million mapped reads were genenrated using R
Genome_build: ARS1
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

organism: Capra hircus

source_name: Embryo

growth_protocol: Embryos were washed three times with BO-IVC medium supplemented with 10% FBS and cultured in groups of 20-25 in 75 μL droplet of BO-IVC medium supplemented with 10% FBS at 38.5°C in an atmosphere containing 5% CO2, 5% O2, 90% N2, and 100% humidity. They were collected at 72 h and 168 h post-IVF to obtain embryos for gene expression analysis and RNA-seq.

extract_protocol:
Embryos were directly lysed and used for cDNA synthesis
Smart-seq2

treatment_protocol: In general, 5-10 pL of 20 µM siRNAs that targeted YTHDF2 were microinjected into the cytoplasm of fertilized embryos at 8 h after IVF. The MISSION siRNA universal negative WT was served as a negative WT (NC) for siRNA experiments. These microinjected embryos were cultured in BO-IVC medium supplemented with 10% FBS at 38.5°C in an atmosphere containing 5% CO2, 5% O2, 90% N2, and 100% humidity. Development status was determined at 72 h and 168 h after microinjection.

value: Embryo

tag: treatment

value: YTHDF2 siRNA injection

tag: Stage


title: H-PCa1

description: circular RNA


title: 117-siTIMP1


title: cholinergic control [D2.12.1_pid1143]


title: stembase_DX_3hai_rep1

description: Gene expression data from stem base of DX line 3 h after dexamethasone treatment

source_name: stem base, DX line, 3hour after dexamethasone treatment


title: Embryo_WT_rep2

value: NC siRNA injection


title: Embryo_WT_rep1


title: Embryo_YTHDF2-KD_rep1


title: Dingo_blood_WGBS

city: Sydney

first: Ksenia

last: Skvortsova

state: NSW

address: 384 Victoria St, Darlinghurst

department: Genomics and Epigenetics

country: Australia

institute: Garvan Institute

description: MethylC-seq

data_processing:
Adaptor sequences and low quality bases were removed using trimmomatic tool (Bolger et al, 2014)
Sequencing reads were aligned to in-silico bisulphite-converted reference genome Canis lupus dingo (ASM325472v1) using WALT mapping tool (Chen et al, 2016)
DNA methylation calling was performed using MethylDackel (https://github.com/dpryan79/MethylDackel)
Genome_build: Canis lupus dingo: ASM325472v1
Supplementary_files_format_and_content: bw / The file contains genomic positions of CpG sites with corresponding methylation values on scale from 0 to 1
Supplementary_files_format_and_content: bigtable.tsv / For bigtable.tsv" processed data files the column headers are as follows: column 1 - assembly (chromosome). column 2 - position: coordinate for the cytosine position on the chromosome. column 3 (.C) - number of reads depicting a methylated cytosine. column 4 (.cov) - total number of reads at that position.

organism: Canis lupus dingo

source_name: Blood-derived DNA subject to WGBS

extract_protocol:
Genomic DNA was extracted using DNeasy Blood & Tissue kit (Qiagen, USA).
MethylC-seq library generation was performed as described previously (Ulrich et al, 2015; Nature Protocols). Briefly, the genomic DNA was sonicated to an average size of 300 bp using a Covaris sonicator. Sonicated DNA was then purified and end-repaired followed by the ligation of methylated Illumina TruSeq sequencing adapters. Library amplification was performed with KAPA HiFi HotStart Uracil+ DNA polymerase (Kapa Biosystems, Woburn, MA).

value: blood


title: mutant dopaminergic [D3.12.2_pid1143]


title: channel catfish 10dpf_rep2

status: Public on Aug 26 2020

city: Auburn University

first: Xu

last: Wang

state: AL

address: 273 CASIC Building, Auburn Research Park, 559 Devall Dr

department: Pathobiology, College of Veterinary Medicine

institute: Auburn University

description:
Illumina mRNA-seq
chan10_2

data_processing:
Illumina CASAVA 1.9.1 software was used for basecalling. Fastqc software was used for quality check.
Sequenced reads were trimmed for adaptor sequence using Trimmomatic v 0.36, and masked for low-complexity or low-quality sequence.
The ramaining high-quality clean reads were mapped to chennel catfish whole genome using STAR v2.7.0
HTSeq-count was conducted to calculate the number of aligned reads of each gene overlapping its exons.
DESeq2 was employed to calculate the log2-fold change (log2FC), a criterion with |log2FC| ≥ 1 and p-value < 0.05 was used as the threshold for evaluating the DEGs.
Genome_build: channel catfish genome IpCoco_1.2
Supplementary_files_format_and_content: Gzipped, tab-delimiited text file inlcuding raw reads counts for every gene in every sample

organism: Ictalurus punctatus

source_name: whole fry

extract_protocol:
RNA extraction was conducted using the Qiagen RNeasy Plus Kit following the manufacture protocols.
The RNA integrity was checked with 4200 TapeStation (Agilent Technologies, Palo Alto, CA, USA). Ribosomal RNA depletion was conducted using Ribozero rRNA Removal Kit (Illumina, San Diego, CA, USA). RNA sequencing library preparation was performed using NEBNext Ultra RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA). Enriched RNAs were fragmented for 15 minutes at 94 °C. The first strand and second strand cDNA were subsequently synthesized. The cDNA fragments were end-repaired and adenylated at 3'ends, and a universal adapter was ligated to cDNA fragments, followed by index addition and library enrichment with limited cycle PCR. Sequencing libraries were validated using the Agilent Tapestation 4200 (Agilent Technologies, Palo Alto, CA, USA) and quantified by using Qubit 2.0 Fluorometer (Invitrogen, Carlsbad, CA).

value: 10 days post fertilization

value: whole-body

tag: Sex

value: Unknown


title: channel catfish 10dpf_rep1

description:
Illumina mRNA-seq
chan10_1


title: channel catfish 8dpf_rep2

description:
Illumina mRNA-seq
chan8_2

value: 8 days post fertilization


title: channel catfish 8dpf_rep1

description:
Illumina mRNA-seq
chan8_1


title: channel catfish 9dpf_rep2

description:
Illumina mRNA-seq
chan9_2

value: 9 days post fertilization


title: stembase_DX_0hai_rep1

description: Gene expression data from stem base of DX line 0 h after dexamethasone treatment

source_name: stem base, DX line, 0hour after dexamethasone treatment


title: IFN-primed MSC-EV

city: Clamart

first: Sébastien

last: Banzet

address: rue Lt Raoul Batany

institute: INSERM U1197

description: test

data_processing:
analysed with GeneX
3 best references miRNA determined by Genex (using Genorm):  hsa-miR-16-5p, hsa-miR-196a-5p, hsa-miR-20a5p
null values replced by Cq= 47, normalization with previously identified references, 2^(Ct Ref-Ct Target), final value=geometric mean of the 3 quantified values

label: SYBR Green

source_name: Msc derived extracellular vesicles

label_protocol: PCR assays were performed using the Exiqon miRCURY LNA™ Universal RT microRNA PCR, microRNA Ready-to-Use PCR, Human panel I and II

extract_protocol: Total RNA was isolated with Qiazol Lysis reagent (Qiagen) with an optimized protocol: 200μl Qiazol and 400μl chloroform were added to each sample, then the manufacturer’s protocol was performed with an additional precipitation step. The aqueous phase was added with an equal volume of isopropanol and 1 μl of GlycoBlue (Ambion). Total RNAs was precipitated for 20 min at 20°C. After centrifugation (12,000g, 15 min, at 4°C), the pellet was washed with 70% ethanol and resuspended in 10 μL of sterile water

tag: priming

value: Interferon gamma 25ng/ml

tag: samples

value: pool of 5 donnors


title: channel catfish 7dpf_rep2

description:
Illumina mRNA-seq
chan7_2

value: 7 days post fertilization

tag: tissue


title: cholinergic control [D1.12.1_pid1143]

value: brain

value: cholinergic


title: control dopaminergic [D1.12.2_pid1143]

value: dopaminergic

value: control


title: control dopaminergic [C1_pid1143]


title: cholinergic mutant [C3_pid1143]

value: mutant


title: 104-siControl

value: Mouse dermal fibroblasts


title: 100-siControl


title: channel catfish 6dpf_rep1

description:
Illumina mRNA-seq
chan6_1

value: 6 days post fertilization


title: channel catfish 5dpf_rep1

description:
Illumina mRNA-seq
chan5_1

value: 5 days post fertilization


title: channel catfish 5dpf_rep2

description:
Illumina mRNA-seq
chan5_2


title: channel catfish 6dpf_rep2

description:
Illumina mRNA-seq
chan6_2


title: channel catfish 7dpf_rep1

description:
Illumina mRNA-seq
chan7_1


title: channel catfish 2dpf_rep1

description:
Illumina mRNA-seq
chan2_1

value: 2 days post fertilization


title: channel catfish 2dpf_rep2

description:
Illumina mRNA-seq
chan2_2


title: HYP-primed MSC-EV

description: test

value: hypoxia 3% O2


title: channel catfish 9dpf_rep1

description:
Illumina mRNA-seq
chan9_1

value: whole-body


title: Control MSC-EV

description: Control


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_C6_AD010_indexed

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

data_processing:
Library strategy: snmC-seq2
Reads trimed with Cutadapt for adapters and low quality bases (Phred score >= 20)
The resulting files are mapped to in-silico bisulfite converted mm10 reference genome using Bismark.
The raw BAM file will be filtered using samtools to filter reads by MAPQ > 10 and use Picard to remove PCR duplicates
Tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls will be generated with in-house developing package using the filtered BAM files
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls. Columns are: 1. Chromosome, 2. Position, 3. Strand, 4. Cytosin Context, 5. methylated base call, 6. total mapped base call, 7. not used, place holder column

source_name: C57BL/6J Male P56 Mouse Brain

growth_protocol: All mice are C57BL/6J Male, brain dissected in P56

extract_protocol:
the brain of P56 male C57BL/6J mouse will be removed and cut into 600 microns thick coronal sections using a tissue matrix. Then each region will be microdissected from the coronal tissue sections based on identified landmarks and brain atlas coordinates, as defined in Allen brain atlas CCF3 (Avaliable at: http://atlas.brain-map.org). For each dissection region, the tissue from several littermate mice will be combined together into to separate replicate groups. The number of animals in a replicate depends on the size of the tissue. Nuclei preparation will be stained with the fluorescently labeled anti-NeuN body and nucleic acid stain Hoechst 33342.
Library prepared following protocol discribed in Luo, Chongyuan, Angeline Rivkin, Jingtian Zhou, Justin P. Sandoval, Laurie Kurihara, Jacinta Lucero, Rosa Castanon, et al. 2018. “Robust Single-Cell DNA Methylome Profiling with snmC-seq2.” Nature Communications 9 (1): 3824.

tag: brain region

value: SSp

value: male

tag: strain


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_1_CEMBA180424_7B_2_G9_AD007_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_1_CEMBA180424_7B_2_F4_AD004_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_1_CEMBA180424_7B_2_B2_AD006_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_1_CEMBA180424_7B_2_C2_AD006_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_1_CEMBA180424_7B_2_A3_AD012_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_1_CEMBA180424_7B_2_B3_AD010_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_1_CEMBA180424_7B_2_A1_AD004_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_1_CEMBA180424_7B_2_A6_AD004_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H9_AD008_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H9_AD001_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H9_AD004_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H9_AD010_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H8_AD010_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H3_AD006_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H8_AD006_indexed


title: Ctrl_rep1

city: Neuherberg

first: Johannes

last: Beckers

address: Ingolstaedter Landstr. 1

department: Institute of Experimental Genetics

country: Germany

institute: Helmholtz Zentrum Muenchen

description: Gene expression data from arcuate nucleus tissue from high-fat diet-fed control mice, biological replicate 1

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol (HiScan)

data_processing: Data processing with the GenomeStudioV2010.1 software (gene expression module version 1.6.0)

label: Biotin

source_name: Arcuate nucleus tissue from high-fat diet-fed control mice, high-fat diet, biological replicate 1

label_protocol: Ovation PicoSL WTA System V2 and Encore BiotinIL Module (Nugen)

growth_protocol: Animals housed under spf conditions

extract_protocol: NucleoSpin RNA, Macherey-Nagel, Düren, Germany

treatment_protocol: Mice with an age of 8 to 10 weeks were switched from chow (5.6% fat, LM-485, Harlan Teklad or Altromin 1314) to HFD (45% kcal fat; Research Diets Inc., New Brunswick, NJ, USA) for 30 wks. In vivo experiments were performed without blinding of the investigators. All WT and KO mice used in our studies were littermates. Mice and were group housed on a 12:12-h light-dark cycle at 22°C with free access to food and water, unless indicated otherwise.

tag: diet

value: high fat

value: Male

value: 40 weeks


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H8_AD004_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H6_AD006_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H9_AD007_indexed


title: Ctrl_rep3

description: Gene expression data from arcuate nucleus tissue from high-fat diet-fed control mice, biological replicate 3

source_name: Arcuate nucleus tissue from high-fat diet-fed control mice, high-fat diet, biological replicate 3

tag: genotype/variation


title: Dusp8_ko_rep4

description: Gene expression data from arcuate nucleus tissue from high-fat diet-fed Dusp8-deficient mice, biological replicate 4

source_name: Arcuate nucleus tissue from high-fat diet-fed Dusp8-deficient mice, biological replicate 4

tag: age


title: Ctrl_rep2

description: Gene expression data from arcuate nucleus tissue from high-fat diet-fed control mice, biological replicate 2

source_name: Arcuate nucleus tissue from high-fat diet-fed control mice, high-fat diet, biological replicate 2


title: Dusp8_ko_rep3

description: Gene expression data from arcuate nucleus tissue from high-fat diet-fed Dusp8-deficient mice, biological replicate 3

source_name: Arcuate nucleus tissue from high-fat diet-fed Dusp8-deficient mice, biological replicate 3


title: Dusp8_ko_rep2

description: Gene expression data from arcuate nucleus tissue from high-fat diet-fed Dusp8-deficient mice, biological replicate 2

source_name: Arcuate nucleus tissue from high-fat diet-fed Dusp8-deficient mice, biological replicate 2


title: Dusp8_ko_rep1

description: Gene expression data from arcuate nucleus tissue from high-fat diet-fed Dusp8-deficient mice, biological replicate 1

source_name: Arcuate nucleus tissue from high-fat diet-fed Dusp8-deficient mice, biological replicate 1


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_1_CEMBA180424_7B_2_C7_AD006_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H7_AD008_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H7_AD007_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H7_AD006_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H7_AD002_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H7_AD010_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H6_AD008_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H6_AD010_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H6_AD001_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H6_AD007_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H8_AD008_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H4_AD007_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H4_AD004_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H4_AD006_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H4_AD001_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H7_AD001_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H3_AD012_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H4_AD002_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H2_AD012_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H3_AD002_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H4_AD008_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H3_AD010_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H3_AD001_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H3_AD004_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H1_AD008_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H2_AD002_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H2_AD006_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H3_AD007_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H11_AD012_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H3_AD008_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H12_AD004_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H1_AD004_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H8_AD012_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H4_AD012_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H6_AD002_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H1_AD007_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H2_AD008_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H1_AD006_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H12_AD007_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H12_AD002_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H1_AD002_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H11_AD010_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H1_AD001_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H11_AD002_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_G9_AD006_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H10_AD007_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H11_AD004_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H10_AD012_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_G9_AD008_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H10_AD001_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H10_AD008_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H11_AD001_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H10_AD010_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H10_AD004_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_G9_AD004_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_G9_AD001_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_G8_AD006_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H12_AD001_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_H10_AD002_indexed


title: 180607_CEMBA_mm_P56_P63_7B_CEMBA180424_7B_3_CEMBA180424_7B_4_G8_AD007_indexed


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