title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_B10_AD006_indexed


title: NS2-2 iPSC-CMs d60 #1

status: Public on Aug 25 2020

type: SRA

city: Goettingen

first: Gabriela

last: Salinas

state: Lower-Saxony

address: Kreuzbergring 57

department: Department of Pathology

country: Germany

institute: Universitaetsmedizin Goettingen

library_source: transcriptomic

data_processing:
Demultiplexing of the intensity files using bcl2fastq version 2.17.1.14. Quality check was done via fastqc (v. 0.11.5, Babraham Bioinformatics)
Read alignment was performed using STAR aligner (v2.5.2a)
Read counting was performed using featureCounts (v1.5.0-p1)
Differential expression analysis was run using DESeq2 R package (version 1.24.0)
Genome_build: hg38 gene version 96
Supplementary_files_format_and_content: tab-delimited text files with raw read count for each gene in each sample

molecule: polyA RNA

organism: Homo sapiens

source_name: cardiomyocytes

growth_protocol: Human iPSC lines were maintained on Matrigel-coated (growth factor reduced, BD Biosciences) plates, passaged every 4-6 days with Versene solution (Thermo Fisher Scientific) and cultured in StemMACS iPS-Brew XF medium (Miltenyi Biotech) supplemented with 2 µM Thiazovivin (Merck Millipore) for 24 hr after passaging with daily medium change. Cell cultures were incubated in a humidiﬁed incubator with 5% CO¬2 and 21% O¬2 at 37°C. Directed differentiation of iPSCs into iPSC-CMs was initiated at confluence of 80-90% in Matrigel-coated plates with cardio differentiation medium composed of RPMI 1640 with Glutamax and HEPES (Thermo Fisher Scientific), 0.5 mg/ml human recombinant albumin (Sigma-Aldrich) and 0.2 mg/ml L-ascorbic acid 2-phosphate (Sigma-Aldrich) and sequential treatment with 4 µM CHIR99021 (Merck Millipore) for 48 h and 5 µM IWP2 (Merck Millipore) for further 48 h. Medium was changed to cardio culture medium composed of RPMI 1640 with Glutamax and HEPES and 2% B27 (Thermo Fisher Scientific) at day 8 with medium change every other day. Differentiated cultures around day 15 were digested with collagenase B (Worthington Biochemical) or 0.25% Trypsin/EDTA (Thermo Fisher Scientific) and replated at lower density (1:2-1:3) in Matrigel-coated plates. Metabolic selection of iPSC-CMs was performed using cardio selection medium composed of RPMI 1640 without glucose (Thermo Fisher Scientific), 0.5 mg/ml human recombinant albumin, 0.2 mg/ml L-ascorbic acid 2-phosphate and 4 mM lactate (Sigma-Aldrich) for 5 days. The iPSC-CMs were cultured in cardio culture medium to day 60 for further maturation.

extract_protocol:
Total RNA of iPSC-CM cultures was isolated using the SV Total RNA Isolation System (Promega) according to the manufacturer’s instructions.
RNA-seq libraries were performed using a modified non strand-specific, massively-parallel cDNA sequencing (RNA-Seq) protocol from Illumina starting with 200 ng RNA. The TruSeq RNA Library Preparation Kit v2, Set A (48 samples, 12 indexes; Illumina) was used. Quality and integrity of RNA was determined with the Fragment Analyzer (Agilent) (RIN > 8). The size of final cDNA libraries was determined by using the dsDNA 905 Reagent Kit (Agilent) exhibiting a sizing of 260 bp in average. Libraries were pooled and sequenced on an Illumina HiSeq 4000 (Illumina) generating 50 bp single-end reads (30-40 Mio reads/sample).

tag: cell type

value: iPSC-derived cardiomyocytes

tag: cell line

value: isHOCMx2.8 (UMGi031-A.8)

tag: maturity


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_B10_AD002_indexed

city: La Jolla

first: Joseph

middle: R

last: Ecker

state: CA

address: 10010 North Torrey Pines Road

department: Genomic Analysis Laboratory

country: USA

institute: HHMI-Salk-Institute

library_source: genomic

data_processing:
Library strategy: snmC-seq2
Reads trimed with Cutadapt for adapters and low quality bases (Phred score >= 20)
The resulting files are mapped to in-silico bisulfite converted mm10 reference genome using Bismark.
The raw BAM file will be filtered using samtools to filter reads by MAPQ > 10 and use Picard to remove PCR duplicates
Tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls will be generated with in-house developing package using the filtered BAM files
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls. Columns are: 1. Chromosome, 2. Position, 3. Strand, 4. Cytosin Context, 5. methylated base call, 6. total mapped base call, 7. not used, place holder column

molecule: genomic DNA

organism: Mus musculus

source_name: C57BL/6J Male P56 Mouse Brain

growth_protocol: All mice are C57BL/6J Male, brain dissected in P56

extract_protocol:
the brain of P56 male C57BL/6J mouse will be removed and cut into 600 microns thick coronal sections using a tissue matrix. Then each region will be microdissected from the coronal tissue sections based on identified landmarks and brain atlas coordinates, as defined in Allen brain atlas CCF3 (Avaliable at: http://atlas.brain-map.org). For each dissection region, the tissue from several littermate mice will be combined together into to separate replicate groups. The number of animals in a replicate depends on the size of the tissue. Nuclei preparation will be stained with the fluorescently labeled anti-NeuN body and nucleic acid stain Hoechst 33342.
Library prepared following protocol discribed in Luo, Chongyuan, Angeline Rivkin, Jingtian Zhou, Justin P. Sandoval, Laurie Kurihara, Jacinta Lucero, Rosa Castanon, et al. 2018. “Robust Single-Cell DNA Methylome Profiling with snmC-seq2.” Nature Communications 9 (1): 3824.

tag: Sex

value: male

tag: brain region

value: PIR

tag: age

tag: strain


title: NS1-2 iPSC-CMs d60 #2


title: NS2-1 iPSC-CMs d60 #1

value: isHOCMx2.3 (UMGi031-A.3)


title: NS2-1 iPSC-CMs d60 #2


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_B10_AD012_indexed


title: NS1-2 iPSC-CMs d60 #1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_B11_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_B11_AD012_indexed


title: NS1-1 iPSC-CMs d60 #2


title: NS1-1 iPSC-CMs d60 #1


title: NS1-corr1 iPSC-CMs d60 A

data_processing:
Demultiplexing of the intensity files using bcl2fastq v2.20.0.422. Quality check was done via fastqc (v. 0.11.5, Babraham Bioinformatics)
Read alignment was performed using STAR aligner (v2.5.2a)
Read counting was performed using featureCounts (v1.5.0-p1)
Differential expression analysis was run using DESeq2 R package (version 1.24.0)
Genome_build: hg38 gene version 96
Supplementary_files_format_and_content: tab-delimited text files with raw read count for each gene in each sample

growth_protocol: Human iPSC lines were maintained on Matrigel-coated (growth factor reduced, BD Biosciences) plates, passaged every 4-6 days with Versene solution (Thermo Fisher Scientific) and cultured in StemMACS iPS-Brew XF medium (Miltenyi Biotech) supplemented with 2 µM Thiazovivin (Merck Millipore) for 24 hr after passaging with daily medium change. Cell cultures were incubated in a humidiﬁed incubator with 5% CO¬2 and 21% O¬2 at 37°C. Directed differentiation of iPSCs into iPSC-CMs was initiated at confluence of 80-90% in Matrigel-coated plates with cardio differentiation medium composed of RPMI 1640 with Glutamax and HEPES (Thermo Fisher Scientific), 0.5 mg/ml human recombinant albumin (Sigma-Aldrich) and 0.2 mg/ml L-ascorbic acid 2-phosphate (Sigma-Aldrich) and sequential treatment with 4 µM CHIR99021 (Merck Millipore) for 48 h and 5 µM IWP2 (Merck Millipore) for further 48 h. Medium was changed to cardio culture medium composed of RPMI 1640 with Glutamax and HEPES and 2% B27 (Thermo Fisher Scientific) at day 8 with medium change every other day. Differentiated cultures around day 15 were digested with collagenase B (Worthington Biochemical) or 0.25% Trypsin/EDTA (Thermo Fisher Scientific) and replated at lower density (1:2-1:3) in Matrigel-coated plates. Metabolic selection of iPSC-CMs was performed using cardio selection medium composed of RPMI 1640 without glucose (Thermo Fisher Scientific), 0.5 mg/ml human recombinant albumin, 0.2 mg/ml L-ascorbic acid 2-phosphate and 4 mM lactate (Sigma-Aldrich) for 5 days. The iPSC-CMs were cultured in cardio culture medium at least to day 60 for further maturation.

value: isHOCMx1-corr4 (UMGi030-A-1.4)


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_B10_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A9_AD010_indexed


title: WT2 iPSC-CMs d60 #2


title: WT1 iPSC-CMs d60 #1


title: WT1 iPSC-CMs d60 #2


title: WT3 iPSC-CMs d60 #1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A9_AD012_indexed


title: WT2 iPSC-CMs d60 #1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_B10_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_B10_AD004_indexed


title: Sample 577_HE10W-PL_sc95

city: Beijing

first: Yuanyuan

last: Fu

address: 5 Yiheyuan Road

country: China

institute: BIOPIC, Peking University

description: trimed reads

data_processing:
For data from Illumina, Illumina CASAVA version 1.8 were used to the basecalling
Read 2 was used to obtain the cell barcodes to further split the reads according to the cell IDs(barcode) and the same time recorded the UMI sequences
Read 1 was picked in each cell and these raw reads were trimmed to remove TSO or polyA sequence
Adaptor contamination and low-quality reads were discarded from the trimmed Read1 raw data
TopHat(version 2.0.14) with default settings were used for sequence alignment and uniquely mapped reads were kept.
Uniquely mapped reads were counted by HTSeq package (version 0.6.0), in which reads with same UMI info were assigned as “1”. Finally, for each given individual cell, cell-gene matrices with UMI counts values were generated.
Genome_build: Reference sequence and transcript annotation files were from UCSC genome assembly hg19
Supplementary_files_format_and_content: tab-delimited text files include UMI values for each Cell

molecule: total RNA

source_name: embryonic brain

extract_protocol:
The dissected tissue sections were digested in 2mg/ml collagenase IV (Gibco, 17104-019), 1 mg/ml papain (Sigma, P4762) and 10 U/μl DNase I (NEB, M0303L) with rough pipetting and then vortex on thermocycler at 37°C for 15 min to get single cells.
We did barcoded single cell transcritome library preparation the same as previous studies. The 3’ end of the mRNAs were captured in the libraries. Specifically, 4 cycles of pre-amplification with 98°C 20s, 65°C 30s and 72°C 5min was carried out before 14 cycles of cDNA amplification with  98°C 20s, 67°C 15s and 72°C 5min in this study.
barcoded-single cell RNA-seq

treatment_protocol: The aborted embryos were immediately dissected for the four brain regions and pons.

tag: embryonic stage

tag: brain structure

value: parietal lobe


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A9_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A8_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A9_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A9_AD008_indexed


title: Sample 578_HE10W-PL_sc96

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A8_AD001_indexed


title: Sample 572_HE10W-PL_sc90

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A8_AD004_indexed


title: Sample 571_HE10W-PL_sc89

description: trimed reads


title: Sample 576_HE10W-PL_sc94

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A8_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A9_AD002_indexed


title: Sample 574_HE10W-PL_sc92

description: trimed reads


title: Sample 575_HE10W-PL_sc93

description: trimed reads


title: Sample 569_HE10W-PL_sc87

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A7_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A8_AD006_indexed


title: Sample 573_HE10W-PL_sc91

description: trimed reads


title: Sample 566_HE10W-PL_sc84

description: trimed reads


title: Sample 570_HE10W-PL_sc88

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A8_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A8_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A7_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A7_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A9_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A7_AD012_indexed


title: Sample 568_HE10W-PL_sc86

description: trimed reads


title: Sample 563_HE10W-PL_sc81

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A7_AD006_indexed


title: Sample 560_HE10W-PL_sc78

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A7_AD004_indexed


title: Sample 567_HE10W-PL_sc85

description: trimed reads


title: Sample 561_HE10W-PL_sc79

description: trimed reads


title: Sample 564_HE10W-PL_sc82

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A7_AD001_indexed


title: Sample 559_HE10W-PL_sc77

description: trimed reads


title: Sample 565_HE10W-PL_sc83

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A5_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A5_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A5_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A5_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A9_AD004_indexed


title: Sample 557_HE10W-PL_sc75

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A5_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A5_AD007_indexed


title: Sample 556_HE10W-PL_sc74

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A5_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A4_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A5_AD002_indexed


title: Sample 555_HE10W-PL_sc73

description: trimed reads


title: Sample 553_HE10W-PL_sc71

description: trimed reads


title: Sample 554_HE10W-PL_sc72

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A4_AD012_indexed


title: Sample 552_HE10W-PL_sc70

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A3_AD012_indexed


title: Sample 550_HE10W-PL_sc68

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A4_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A4_AD006_indexed


title: Sample 558_HE10W-PL_sc76

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A4_AD002_indexed


title: Sample 549_HE10W-PL_sc67

description: trimed reads


title: Sample 546_HE10W-PL_sc64

description: trimed reads


title: Sample 545_HE10W-PL_sc63

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A7_AD010_indexed


title: Sample 562_HE10W-PL_sc80

description: trimed reads


title: Sample 548_HE10W-PL_sc66

description: trimed reads


title: Sample 544_HE10W-PL_sc62

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A3_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A3_AD007_indexed


title: Sample 543_HE10W-PL_sc61

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A4_AD001_indexed


title: Sample 542_HE10W-PL_sc60

description: trimed reads


title: Sample 541_HE10W-PL_sc59

description: trimed reads


title: Sample 540_HE10W-PL_sc58

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A2_AD001_indexed


title: Sample 551_HE10W-PL_sc69

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A2_AD010_indexed


title: Sample 538_HE10W-PL_sc56

description: trimed reads


title: Sample 539_HE10W-PL_sc57

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A3_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A2_AD004_indexed


title: Sample 547_HE10W-PL_sc65

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A3_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A2_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A3_AD006_indexed


title: Sample 535_HE10W-PL_sc53

description: trimed reads


title: Sample 536_HE10W-PL_sc54

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A2_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A2_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A3_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A2_AD007_indexed


title: Sample 534_HE10W-PL_sc52

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A1_AD010_indexed


title: Sample 531_HE10W-PL_sc49

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A2_AD002_indexed


title: Sample 533_HE10W-PL_sc51

description: trimed reads


title: Sample 532_HE10W-PL_sc50

description: trimed reads


title: Sample 530_HE10W-PL_sc48

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A1_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A4_AD008_indexed


title: Sample 537_HE10W-PL_sc55

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A1_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A1_AD006_indexed


title: Sample 528_HE10W-PL_sc46

description: trimed reads


title: Sample 527_HE10W-PL_sc45

description: trimed reads


title: Sample 526_HE10W-PL_sc44

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A1_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A1_AD001_indexed


title: Sample 525_HE10W-PL_sc43

description: trimed reads


title: Sample 524_HE10W-PL_sc42

description: trimed reads


title: Sample 523_HE10W-PL_sc41

description: trimed reads


title: Sample 522_HE10W-PL_sc40

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A12_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A1_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A12_AD004_indexed


title: Sample 521_HE10W-PL_sc39

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A1_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A10_AD012_indexed


title: Sample 520_HE10W-PL_sc38

description: trimed reads


title: Sample 519_HE10W-PL_sc37

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A10_AD006_indexed


title: Sample 517_HE10W-PL_sc35

description: trimed reads


title: Sample 529_HE10W-PL_sc47

description: trimed reads


title: Sample 518_HE10W-PL_sc36

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A12_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A12_AD001_indexed


title: Sample 515_HE10W-PL_sc33

description: trimed reads


title: Sample 514_HE10W-PL_sc32

description: trimed reads


title: Sample 516_HE10W-PL_sc34

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A10_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A10_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A10_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A12_AD002_indexed


title: Sample 512_HE10W-PL_sc30

description: trimed reads


title: Sample 513_HE10W-PL_sc31

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A12_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H9_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A12_AD007_indexed


title: Sample 509_HE10W-PL_sc27

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H9_AD008_indexed


title: Sample 510_HE10W-PL_sc28

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H9_AD012_indexed


title: Sample 508_HE10W-PL_sc26

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H8_AD012_indexed


title: Sample 507_HE10W-PL_sc25

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H9_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H9_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H8_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H9_AD002_indexed


title: Sample 511_HE10W-PL_sc29

description: trimed reads


title: Sample 504_HE10W-PL_sc22

description: trimed reads


title: Sample 505_HE10W-PL_sc23

description: trimed reads


title: Sample 500_HE10W-PL_sc18

description: trimed reads


title: Sample 501_HE10W-PL_sc19

description: trimed reads


title: Sample 503_HE10W-PL_sc21

description: trimed reads


title: Sample 502_HE10W-PL_sc20

description: trimed reads


title: Sample 499_HE10W-PL_sc17

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H8_AD001_indexed


title: Sample 497_HE10W-PL_sc15

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H7_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H8_AD004_indexed


title: Sample 496_HE10W-PL_sc14

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H7_AD006_indexed


title: Sample 498_HE10W-PL_sc16

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H8_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H8_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H7_AD010_indexed


title: Sample 495_HE10W-PL_sc13

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H7_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H8_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H7_AD002_indexed


title: Sample 506_HE10W-PL_sc24

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H7_AD012_indexed


title: Sample 492_HE10W-PL_sc10

description: trimed reads


title: Sample 493_HE10W-PL_sc11

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H4_AD006_indexed


title: Sample 490_HE10W-PL_sc8

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H5_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H7_AD001_indexed


title: Sample 488_HE10W-PL_sc6

description: trimed reads


title: Sample 491_HE10W-PL_sc9

description: trimed reads


title: Sample 489_HE10W-PL_sc7

description: trimed reads


title: Sample 487_HE10W-PL_sc5

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H5_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H4_AD004_indexed


title: Sample 486_HE10W-PL_sc4

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H5_AD004_indexed


title: Sample 494_HE10W-PL_sc12

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H5_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H5_AD002_indexed


title: Sample 485_HE10W-PL_sc3

description: trimed reads


title: Sample 484_HE10W-PL_sc2

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H5_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H5_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H4_AD001_indexed


title: Sample 21_HE10W-PL_sc1

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H5_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H3_AD008_indexed


title: Sample 482_HE10W_PL_sc143

description: trimed reads


title: Sample 483_HE10W_PL_sc144

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H3_AD010_indexed


title: Sample 476_HE10W_PL_sc137

description: trimed reads


title: Sample 479_HE10W_PL_sc140

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H3_AD001_indexed


title: Sample 477_HE10W_PL_sc138

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H3_AD004_indexed


title: Sample 478_HE10W_PL_sc139

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H2_AD010_indexed


title: Sample 475_HE10W_PL_sc136

description: trimed reads


title: Sample 481_HE10W_PL_sc142

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H4_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_A10_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H3_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H2_AD008_indexed


title: Sample 471_HE10W_PL_sc132

description: trimed reads


title: Sample 472_HE10W_PL_sc133

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H2_AD007_indexed


title: Sample 470_HE10W_PL_sc131

description: trimed reads


title: Sample 468_HE10W_PL_sc129

description: trimed reads


title: Sample 480_HE10W_PL_sc141

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H1_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H2_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H1_AD012_indexed


title: Sample 467_HE10W_PL_sc128

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H2_AD004_indexed


title: Sample 469_HE10W_PL_sc130

description: trimed reads


title: Sample 474_HE10W_PL_sc135

description: trimed reads


title: Sample 466_HE10W_PL_sc127

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H1_AD010_indexed


title: Sample 473_HE10W_PL_sc134

description: trimed reads


title: Sample 465_HE10W_PL_sc126

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H1_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H1_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H3_AD006_indexed


title: Sample 461_HE10W_PL_sc122

description: trimed reads


title: Sample 460_HE10W_PL_sc121

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H2_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H1_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H12_AD007_indexed


title: Sample 463_HE10W_PL_sc124

description: trimed reads


title: Sample 457_HE10W_PL_sc118

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H12_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H2_AD006_indexed


title: Sample 458_HE10W_PL_sc119

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H12_AD001_indexed


title: Sample 456_HE10W_PL_sc117

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H12_AD006_indexed


title: Sample 455_HE10W_PL_sc116

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H10_AD010_indexed


title: Sample 464_HE10W_PL_sc125

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H11_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H10_AD006_indexed


title: Sample 452_HE10W_PL_sc113

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H10_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H1_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H12_AD004_indexed


title: Sample 453_HE10W_PL_sc114

description: trimed reads


title: Sample 451_HE10W_PL_sc112

description: trimed reads


title: Sample 459_HE10W_PL_sc120

description: trimed reads


title: Sample 462_HE10W_PL_sc123

description: trimed reads


title: Sample 449_HE10W_PL_sc110

description: trimed reads


title: Sample 450_HE10W_PL_sc111

description: trimed reads


title: Sample 447_HE10W_PL_sc108

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H11_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G9_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H11_AD006_indexed


title: Sample 448_HE10W_PL_sc109

description: trimed reads


title: Sample 446_HE10W_PL_sc107

description: trimed reads


title: Sample 445_HE10W_PL_sc106

description: trimed reads


title: Sample 444_HE10W_PL_sc105

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H10_AD012_indexed


title: Sample 454_HE10W_PL_sc115

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H10_AD001_indexed


title: Sample 441_HE10W_PL_sc102

description: trimed reads


title: Sample 440_HE10W_PL_sc101

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H10_AD002_indexed


title: Sample 439_HE10W_PL_sc100

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H11_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G9_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G9_AD008_indexed


title: Sample 443_HE10W_PL_sc104

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G8_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G8_AD007_indexed


title: Sample 438_HE10W_PL_sc99

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G8_AD004_indexed


title: Sample 437_HE10W_PL_sc98

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H11_AD001_indexed


title: Sample 435_HE10W_TL_sc96

description: trimed reads

value: temporal lobe


title: Sample 433_HE10W_TL_sc94

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G9_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H11_AD004_indexed


title: Sample 434_HE10W_TL_sc95

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G7_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G7_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G7_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G7_AD006_indexed


title: Sample 430_HE10W_TL_sc91

description: trimed reads


title: Sample 442_HE10W_PL_sc103

description: trimed reads


title: Sample 431_HE10W_TL_sc92

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_3_CEMBA180326_3E_4_C8_AD008_indexed


title: Sample 432_HE10W_TL_sc93

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G9_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G7_AD010_indexed


title: Sample 428_HE10W_TL_sc89

description: trimed reads


title: Sample 427_HE10W_TL_sc88

description: trimed reads


title: Sample 426_HE10W_TL_sc87

description: trimed reads


title: Sample 436_HE10W_PL_sc97

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G7_AD007_indexed


title: Sample 423_HE10W_TL_sc84

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G7_AD004_indexed


title: Sample 424_HE10W_TL_sc85

description: trimed reads


title: Sample 425_HE10W_TL_sc86

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G5_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G8_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G8_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G7_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G4_AD010_indexed


title: Sample 421_HE10W_TL_sc82

description: trimed reads


title: Sample 420_HE10W_TL_sc81

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G5_AD006_indexed


title: Sample 419_HE10W_TL_sc80

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G5_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G5_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G4_AD007_indexed


title: Sample 422_HE10W_TL_sc83

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G4_AD006_indexed


title: Sample 417_HE10W_TL_sc78

description: trimed reads


title: Sample 418_HE10W_TL_sc79

description: trimed reads


title: Sample 416_HE10W_TL_sc77

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G4_AD008_indexed


title: Sample 415_HE10W_TL_sc76

description: trimed reads


title: Sample 429_HE10W_TL_sc90

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G5_AD001_indexed


title: Sample 414_HE10W_TL_sc75

description: trimed reads


title: Sample 413_HE10W_TL_sc74

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G5_AD007_indexed


title: Sample 412_HE10W_TL_sc73

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G4_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G5_AD008_indexed


title: Sample 411_HE10W_TL_sc72

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G4_AD001_indexed


title: Sample 409_HE10W_TL_sc70

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G4_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G3_AD010_indexed


title: Sample 410_HE10W_TL_sc71

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G3_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G4_AD002_indexed


title: Sample 408_HE10W_TL_sc69

description: trimed reads


title: Sample 406_HE10W_TL_sc67

description: trimed reads


title: Sample 407_HE10W_TL_sc68

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G3_AD002_indexed


title: Sample 405_HE10W_TL_sc66

description: trimed reads


title: Sample 404_HE10W_TL_sc65

description: trimed reads


title: Sample 403_HE10W_TL_sc64

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G3_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G3_AD004_indexed


title: Sample 402_HE10W_TL_sc63

description: trimed reads


title: Sample 401_HE10W_TL_sc62

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G3_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G3_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G1_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G2_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G2_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G2_AD007_indexed


title: Sample 400_HE10W_TL_sc61

description: trimed reads


title: Sample 398_HE10W_TL_sc59

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G2_AD004_indexed


title: Sample 396_HE10W_TL_sc57

description: trimed reads


title: Sample 399_HE10W_TL_sc60

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G2_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G1_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G2_AD002_indexed


title: Sample 395_HE10W_TL_sc56

description: trimed reads


title: Sample 394_HE10W_TL_sc55

description: trimed reads


title: Sample 393_HE10W_TL_sc54

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G1_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G2_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_H10_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G1_AD012_indexed


title: Sample 391_HE10W_TL_sc52

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G1_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G2_AD010_indexed


title: Sample 387_HE10W_TL_sc48

description: trimed reads


title: Sample 389_HE10W_TL_sc50

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G12_AD007_indexed


title: Sample 386_HE10W_TL_sc47

description: trimed reads


title: Sample 385_HE10W_TL_sc46

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G12_AD004_indexed


title: Sample 384_HE10W_TL_sc45

description: trimed reads


title: Sample 397_HE10W_TL_sc58

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G12_AD012_indexed


title: Sample 392_HE10W_TL_sc53

description: trimed reads


title: Sample 383_HE10W_TL_sc44

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G1_AD006_indexed


title: Sample 382_HE10W_TL_sc43

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G11_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G11_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G12_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G11_AD001_indexed


title: Sample 379_HE10W_TL_sc40

description: trimed reads


title: Sample 388_HE10W_TL_sc49

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G12_AD008_indexed


title: Sample 378_HE10W_TL_sc39

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G12_AD001_indexed


title: Sample 380_HE10W_TL_sc41

description: trimed reads


title: Sample 390_HE10W_TL_sc51

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G11_AD008_indexed


title: Sample 377_HE10W_TL_sc38

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G11_AD010_indexed


title: Sample 375_HE10W_TL_sc36

description: trimed reads


title: Sample 374_HE10W_TL_sc35

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G11_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G11_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G10_AD007_indexed


title: Sample 371_HE10W_TL_sc32

description: trimed reads


title: Sample 373_HE10W_TL_sc34

description: trimed reads


title: Sample 381_HE10W_TL_sc42

description: trimed reads


title: Sample 376_HE10W_TL_sc37

description: trimed reads


title: Sample 370_HE10W_TL_sc31

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G10_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G11_AD002_indexed


title: Sample 369_HE10W_TL_sc30

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F9_AD010_indexed


title: Sample 367_HE10W_TL_sc28

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G10_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G1_AD004_indexed


title: Sample 368_HE10W_TL_sc29

description: trimed reads


title: Sample 366_HE10W_TL_sc27

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F9_AD007_indexed


title: Sample 364_HE10W_TL_sc25

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G10_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F9_AD004_indexed


title: Sample 363_HE10W_TL_sc24

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G10_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F9_AD006_indexed


title: Sample 362_HE10W_TL_sc23

description: trimed reads


title: Sample 361_HE10W_TL_sc22

description: trimed reads


title: Sample 372_HE10W_TL_sc33

description: trimed reads


title: Sample 357_HE10W_TL_sc18

description: trimed reads


title: Sample 359_HE10W_TL_sc20

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F9_AD002_indexed


title: Sample 358_HE10W_TL_sc19

description: trimed reads


title: Sample 356_HE10W_TL_sc17

description: trimed reads


title: Sample 360_HE10W_TL_sc21

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F8_AD004_indexed


title: Sample 355_HE10W_TL_sc16

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F8_AD001_indexed


title: Sample 354_HE10W_TL_sc15

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F8_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F8_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F9_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F8_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F8_AD008_indexed


title: Sample 352_HE10W_TL_sc13

description: trimed reads


title: Sample 353_HE10W_TL_sc14

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F8_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F7_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F9_AD008_indexed


title: Sample 365_HE10W_TL_sc26

description: trimed reads


title: Sample 350_HE10W_TL_sc11

description: trimed reads


title: Sample 351_HE10W_TL_sc12

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F7_AD010_indexed


title: Sample 349_HE10W_TL_sc10

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F7_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F8_AD006_indexed


title: Sample 348_HE10W_TL_sc9

description: trimed reads


title: Sample 345_HE10W_TL_sc6

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F7_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F7_AD002_indexed


title: Sample 344_HE10W_TL_sc5

description: trimed reads


title: Sample 346_HE10W_TL_sc7

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F5_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F5_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F5_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F7_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F5_AD006_indexed


title: Sample 343_HE10W_TL_sc4

description: trimed reads


title: Sample 342_HE10W_TL_sc3

description: trimed reads


title: Sample 339_HE10W_OL_sc96

description: trimed reads

value: occipital lobe


title: Sample 338_HE10W_OL_sc95

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F4_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F4_AD008_indexed


title: Sample 337_HE10W_OL_sc94

description: trimed reads


title: Sample 336_HE10W_OL_sc93

description: trimed reads


title: Sample 340_HE10W_TL_sc1

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F4_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F5_AD004_indexed


title: Sample 335_HE10W_OL_sc92

description: trimed reads


title: Sample 341_HE10W_TL_sc2

description: trimed reads


title: Sample 347_HE10W_TL_sc8

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F5_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F4_AD012_indexed


title: Sample 334_HE10W_OL_sc91

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F5_AD002_indexed


title: Sample 333_HE10W_OL_sc90

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F4_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F4_AD010_indexed


title: Sample 332_HE10W_OL_sc89

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F4_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F4_AD001_indexed


title: Sample 330_HE10W_OL_sc87

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F3_AD010_indexed


title: Sample 329_HE10W_OL_sc86

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F3_AD004_indexed


title: Sample 328_HE10W_OL_sc85

description: trimed reads


title: Sample 324_HE10W_OL_sc81

description: trimed reads


title: Sample 325_HE10W_OL_sc82

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F3_AD008_indexed


title: Sample 326_HE10W_OL_sc83

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_G10_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F3_AD006_indexed


title: Sample 327_HE10W_OL_sc84

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F3_AD001_indexed


title: Sample 323_HE10W_OL_sc80

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F2_AD012_indexed


title: Sample 321_HE10W_OL_sc78

description: trimed reads


title: Sample 322_HE10W_OL_sc79

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F3_AD002_indexed


title: Sample 320_HE10W_OL_sc77

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F2_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F2_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F2_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F1_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F2_AD001_indexed


title: Sample 318_HE10W_OL_sc75

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F3_AD007_indexed


title: Sample 316_HE10W_OL_sc73

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F1_AD008_indexed


title: Sample 317_HE10W_OL_sc74

description: trimed reads


title: Sample 315_HE10W_OL_sc72

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F1_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F2_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F1_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F1_AD007_indexed


title: Sample 312_HE10W_OL_sc69

description: trimed reads


title: Sample 311_HE10W_OL_sc68

description: trimed reads


title: Sample 313_HE10W_OL_sc70

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F1_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F1_AD004_indexed


title: Sample 310_HE10W_OL_sc67

description: trimed reads


title: Sample 309_HE10W_OL_sc66

description: trimed reads


title: Sample 319_HE10W_OL_sc76

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F12_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F12_AD006_indexed


title: Sample 306_HE10W_OL_sc63

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F12_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F12_AD012_indexed


title: Sample 307_HE10W_OL_sc64

description: trimed reads


title: Sample 304_HE10W_OL_sc61

description: trimed reads


title: Sample 303_HE10W_OL_sc60

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F12_AD002_indexed


title: Sample 314_HE10W_OL_sc71

description: trimed reads


title: Sample 305_HE10W_OL_sc62

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F11_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F10_AD007_indexed


title: Sample 301_HE10W_OL_sc58

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F11_AD006_indexed


title: Sample 299_HE10W_OL_sc56

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F10_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F10_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F11_AD008_indexed


title: Sample 308_HE10W_OL_sc65

description: trimed reads


title: Sample 297_HE10W_OL_sc54

description: trimed reads


title: Sample 298_HE10W_OL_sc55

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F11_AD007_indexed


title: Sample 295_HE10W_OL_sc52

description: trimed reads


title: Sample 331_HE10W_OL_sc88

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F10_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F10_AD008_indexed


title: Sample 293_HE10W_OL_sc50

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F1_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F12_AD001_indexed


title: Sample 294_HE10W_OL_sc51

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F10_AD006_indexed


title: Sample 302_HE10W_OL_sc59

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F10_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F10_AD001_indexed


title: Sample 290_HE10W_OL_sc47

description: trimed reads


title: Sample 300_HE10W_OL_sc57

description: trimed reads


title: Sample 291_HE10W_OL_sc48

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F11_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E9_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F9_AD012_indexed


title: Sample 296_HE10W_OL_sc53

description: trimed reads


title: Sample 289_HE10W_OL_sc46

description: trimed reads


title: Sample 287_HE10W_OL_sc44

description: trimed reads


title: Sample 284_HE10W_OL_sc41

description: trimed reads


title: Sample 286_HE10W_OL_sc43

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E9_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E9_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E9_AD008_indexed


title: Sample 285_HE10W_OL_sc42

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E9_AD007_indexed


title: Sample 283_HE10W_OL_sc40

description: trimed reads


title: Sample 282_HE10W_OL_sc39

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E9_AD002_indexed


title: Sample 281_HE10W_OL_sc38

description: trimed reads


title: Sample 292_HE10W_OL_sc49

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E7_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E8_AD007_indexed


title: Sample 279_HE10W_OL_sc36

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E8_AD008_indexed


title: Sample 288_HE10W_OL_sc45

description: trimed reads


title: Sample 278_HE10W_OL_sc35

description: trimed reads


title: Sample 277_HE10W_OL_sc34

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E8_AD012_indexed


title: Sample 276_HE10W_OL_sc33

description: trimed reads


title: Sample 275_HE10W_OL_sc32

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E8_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E8_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E8_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E8_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E7_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E7_AD008_indexed


title: Sample 272_HE10W_OL_sc29

description: trimed reads


title: Sample 273_HE10W_OL_sc30

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E7_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E7_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E7_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E7_AD006_indexed


title: Sample 269_HE10W_OL_sc26

description: trimed reads


title: Sample 270_HE10W_OL_sc27

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E8_AD002_indexed


title: Sample 280_HE10W_OL_sc37

description: trimed reads


title: Sample 268_HE10W_OL_sc25

description: trimed reads


title: Sample 267_HE10W_OL_sc24

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E5_AD012_indexed


title: Sample 266_HE10W_OL_sc23

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E5_AD006_indexed


title: Sample 265_HE10W_OL_sc22

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E7_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E4_AD001_indexed


title: Sample 264_HE10W_OL_sc21

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E5_AD008_indexed


title: Sample 263_HE10W_OL_sc20

description: trimed reads


title: Sample 261_HE10W_OL_sc18

description: trimed reads


title: Sample 274_HE10W_OL_sc31

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E4_AD010_indexed


title: Sample 271_HE10W_OL_sc28

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E5_AD002_indexed


title: Sample 262_HE10W_OL_sc19

description: trimed reads


title: Sample 259_HE10W_OL_sc16

description: trimed reads


title: Sample 257_HE10W_OL_sc14

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E4_AD007_indexed


title: Sample 260_HE10W_OL_sc17

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E3_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E5_AD001_indexed


title: Sample 256_HE10W_OL_sc13

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E3_AD006_indexed


title: Sample 255_HE10W_OL_sc12

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E3_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E4_AD012_indexed


title: Sample 254_HE10W_OL_sc11

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E3_AD010_indexed


title: Sample 252_HE10W_OL_sc9

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E3_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E5_AD004_indexed


title: Sample 253_HE10W_OL_sc10

description: trimed reads


title: Sample 251_HE10W_OL_sc8

description: trimed reads


title: Sample 250_HE10W_OL_sc7

description: trimed reads


title: Sample 258_HE10W_OL_sc15

description: trimed reads


title: Sample 248_HE10W_OL_sc5

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E2_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E1_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E2_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E2_AD001_indexed


title: Sample 249_HE10W_OL_sc6

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E3_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E2_AD008_indexed


title: Sample 245_HE10W_OL_sc2

description: trimed reads


title: Sample 246_HE10W_OL_sc3

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E1_AD006_indexed


title: Sample 244_HE10W_OL_sc1

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E3_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E3_AD002_indexed


title: Sample 243_HE10W_FL_sc96

description: trimed reads

value: frontal lobe


title: Sample 241_HE10W_FL_sc94

description: trimed reads


title: Sample 242_HE10W_FL_sc95

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E1_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E1_AD007_indexed


title: Sample 240_HE10W_FL_sc93

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E2_AD002_indexed


title: Sample 239_HE10W_FL_sc92

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E1_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E2_AD006_indexed


title: Sample 238_HE10W_FL_sc91

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E1_AD001_indexed


title: Sample 247_HE10W_OL_sc4

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E1_AD002_indexed


title: Sample 236_HE10W_FL_sc89

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E12_AD012_indexed


title: Sample 235_HE10W_FL_sc88

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E1_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_F11_AD002_indexed


title: Sample 234_HE10W_FL_sc87

description: trimed reads


title: Sample 230_HE10W_FL_sc83

description: trimed reads


title: Sample 231_HE10W_FL_sc84

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E12_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E12_AD006_indexed


title: Sample 227_HE10W_FL_sc80

description: trimed reads


title: Sample 229_HE10W_FL_sc82

description: trimed reads


title: Sample 226_HE10W_FL_sc79

description: trimed reads


title: Sample 228_HE10W_FL_sc81

description: trimed reads


title: Sample 225_HE10W_FL_sc78

description: trimed reads


title: Sample 237_HE10W_FL_sc90

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E11_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E11_AD007_indexed


title: Sample 233_HE10W_FL_sc86

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E12_AD002_indexed


title: Sample 224_HE10W_FL_sc77

description: trimed reads


title: Sample 232_HE10W_FL_sc85

description: trimed reads


title: Sample 223_HE10W_FL_sc76

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E11_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E11_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E2_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E10_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E10_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E12_AD004_indexed


title: Sample 220_HE10W_FL_sc73

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E10_AD008_indexed


title: Sample 222_HE10W_FL_sc75

description: trimed reads


title: Sample 221_HE10W_FL_sc74

description: trimed reads


title: Sample 219_HE10W_FL_sc72

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E12_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E11_AD006_indexed


title: Sample 218_HE10W_FL_sc71

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E11_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E10_AD010_indexed


title: Sample 216_HE10W_FL_sc69

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E10_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D9_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D9_AD007_indexed


title: Sample 214_HE10W_FL_sc67

description: trimed reads


title: Sample 213_HE10W_FL_sc66

description: trimed reads


title: Sample 212_HE10W_FL_sc65

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E10_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E10_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D9_AD008_indexed


title: Sample 209_HE10W_FL_sc62

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D8_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D9_AD012_indexed


title: Sample 211_HE10W_FL_sc64

description: trimed reads


title: Sample 217_HE10W_FL_sc70

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D8_AD007_indexed


title: Sample 207_HE10W_FL_sc60

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D8_AD008_indexed


title: Sample 215_HE10W_FL_sc68

description: trimed reads


title: Sample 206_HE10W_FL_sc59

description: trimed reads


title: Sample 203_HE10W_FL_sc56

description: trimed reads


title: Sample 208_HE10W_FL_sc61

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D9_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D8_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D9_AD010_indexed


title: Sample 204_HE10W_FL_sc57

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D7_AD010_indexed


title: Sample 202_HE10W_FL_sc55

description: trimed reads


title: Sample 201_HE10W_FL_sc54

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D8_AD002_indexed


title: Sample 200_HE10W_FL_sc53

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D7_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D7_AD007_indexed


title: Sample 205_HE10W_FL_sc58

description: trimed reads


title: Sample 198_HE10W_FL_sc51

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D9_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D8_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D7_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D7_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D7_AD012_indexed


title: Sample 197_HE10W_FL_sc50

description: trimed reads


title: Sample 196_HE10W_FL_sc49

description: trimed reads


title: Sample 195_HE10W_FL_sc48

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_E10_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D5_AD008_indexed


title: Sample 193_HE10W_FL_sc46

description: trimed reads


title: Sample 192_HE10W_FL_sc45

description: trimed reads


title: Sample 210_HE10W_FL_sc63

description: trimed reads


title: Sample 190_HE10W_FL_sc43

description: trimed reads


title: Sample 194_HE10W_FL_sc47

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D5_AD006_indexed


title: Sample 191_HE10W_FL_sc44

description: trimed reads


title: Sample 199_HE10W_FL_sc52

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D7_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D5_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D5_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D5_AD010_indexed


title: Sample 188_HE10W_FL_sc41

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D5_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D4_AD004_indexed


title: Sample 187_HE10W_FL_sc40

description: trimed reads


title: Sample 186_HE10W_FL_sc39

description: trimed reads


title: Sample 185_HE10W_FL_sc38

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D4_AD007_indexed


title: Sample 184_HE10W_FL_sc37

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D4_AD001_indexed


title: Sample 183_HE10W_FL_sc36

description: trimed reads


title: Sample 182_HE10W_FL_sc35

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D5_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D3_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D3_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D3_AD004_indexed


title: Sample 178_HE10W_FL_sc31

description: trimed reads


title: Sample 181_HE10W_FL_sc34

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D5_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D4_AD012_indexed


title: Sample 180_HE10W_FL_sc33

description: trimed reads


title: Sample 189_HE10W_FL_sc42

description: trimed reads


title: Sample 176_HE10W_FL_sc29

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D3_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D4_AD006_indexed


title: Sample 177_HE10W_FL_sc30

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D3_AD001_indexed


title: Sample 175_HE10W_FL_sc28

description: trimed reads


title: Sample 174_HE10W_FL_sc27

description: trimed reads


title: Sample 179_HE10W_FL_sc32

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D2_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D3_AD012_indexed


title: Sample 173_HE10W_FL_sc26

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D4_AD008_indexed


title: Sample 172_HE10W_FL_sc25

description: trimed reads


title: Sample 171_HE10W_FL_sc24

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D2_AD012_indexed


title: Sample 170_HE10W_FL_sc23

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D3_AD002_indexed


title: Sample 169_HE10W_FL_sc22

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D2_AD007_indexed


title: Sample 168_HE10W_FL_sc21

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D2_AD004_indexed


title: Sample 167_HE10W_FL_sc20

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D2_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D2_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D2_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D1_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D1_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D1_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D1_AD007_indexed


title: Sample 164_HE10W_FL_sc17

description: trimed reads


title: Sample 163_HE10W_FL_sc16

description: trimed reads


title: Sample 165_HE10W_FL_sc18

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D1_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D1_AD002_indexed


title: Sample 162_HE10W_FL_sc15

description: trimed reads


title: Sample 161_HE10W_FL_sc14

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D1_AD001_indexed


title: Sample 158_HE10W_FL_sc11

description: trimed reads


title: Sample 159_HE10W_FL_sc12

description: trimed reads


title: Sample 157_HE10W_FL_sc10

description: trimed reads


title: Sample 156_HE10W_FL_sc9

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D12_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D7_AD001_indexed


title: Sample 155_HE10W_FL_sc8

description: trimed reads


title: Sample 154_HE10W_FL_sc7

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D12_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D12_AD012_indexed


title: Sample 153_HE10W_FL_sc6

description: trimed reads


title: Sample 160_HE10W_FL_sc13

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D12_AD004_indexed


title: Sample 152_HE10W_FL_sc5

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D12_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D11_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D11_AD001_indexed


title: Sample 149_HE10W_FL_sc2

description: trimed reads


title: Sample 151_HE10W_FL_sc4

description: trimed reads


title: Sample 150_HE10W_FL_sc3

description: trimed reads


title: Sample 146_HE26W3-PONS

value: pons


title: Sample 166_HE10W_FL_sc19

description: trimed reads


title: Sample 147_HE28W-PONS


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D11_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D11_AD002_indexed


title: Sample 148_HE10W_FL_sc1

description: trimed reads


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D11_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D10_AD012_indexed


title: Sample 144_HE26W3-FL_PL

value: frontal  lobe and parietal lobe


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D10_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D10_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D10_AD007_indexed


title: Sample 143_HE26W2-PONS2


title: Sample 141_HE26W-PONS


title: Sample 140_HE26W-TL


title: Sample 139_HE26W-OL


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D11_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D11_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D10_AD002_indexed


title: Sample 145_HE26W3-OL_TL

value: occipital lobe and temporal lobe


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D11_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D10_AD006_indexed


title: Sample 138_HE26W-PL


title: Sample 137_HE26W-FL


title: Sample 142_HE26W2-PONS1


title: Sample 135_HE24W3-PONS2


title: Sample 136_HE24W3-PONS3


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_D10_AD001_indexed


title: Sample 133_HE24W2-PONS


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C9_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C9_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C9_AD010_indexed


title: Sample 132_HE22W-PONS


title: Sample 131_HE21W2-PONS


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C8_AD008_indexed


title: Sample 128_HE21W2-OL2


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C9_AD001_indexed


title: Sample 129_HE21W2-TL1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C8_AD010_indexed


title: Sample 130_HE21W2-TL2


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C8_AD007_indexed


title: Sample 127_HE21W2-OL1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C8_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C9_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C8_AD006_indexed


title: Sample 126_HE21W2-PL2


title: Sample 125_HE21W2-PL1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C8_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C7_AD010_indexed


title: Sample 134_HE24W3-PONS1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C7_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C9_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C8_AD012_indexed


title: Sample 124_HE21W2-FL2


title: Sample 121_HE21W-TL


title: Sample 122_HE21W-PONS


title: Sample 119_HE21W-PL


title: Sample 120_HE21W-OL


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C9_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C7_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C7_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C7_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C7_AD007_indexed


title: Sample 114_HE20W2-PONS1


title: Sample 115_HE20W2-PONS2


title: Sample 112_HE20W-TL1


title: Sample 116_HE20W3-PONS1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C5_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C5_AD008_indexed


title: Sample 113_HE20W-TL2


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C5_AD004_indexed


title: Sample 123_HE21W2-FL1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C5_AD007_indexed


title: Sample 111_HE20W-OL2


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C4_AD010_indexed


title: Sample 110_HE20W-OL1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C5_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C4_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C4_AD008_indexed


title: Sample 117_HE20W3-PONS2


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C4_AD007_indexed


title: Sample 109_HE20W-PL2


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C5_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C4_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C5_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C4_AD001_indexed


title: Sample 108_HE20W-PL1


title: Sample 104_HE19W2-PONS1


title: Sample 105_HE19W-PONS2


title: Sample 107_HE20W-FL2


title: Sample 106_HE20W-FL1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C4_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C3_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C3_AD010_indexed


title: Sample 118_HE21W-FL


title: Sample 102_HE18W-PONS2


title: Sample 103_HE19W1-PONS1


title: Sample 99_HE17W2-TL2


title: Sample 101_HE18W-PONS1


title: Sample 100_HE17W2-PONS


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C3_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C3_AD007_indexed


title: Sample 98_HE17W2-TL1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C3_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C3_AD001_indexed


title: Sample 96_HE17W2-OL1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C2_AD012_indexed


title: Sample 95_HE17W2-PL2


title: Sample 97_HE17W2-OL2


title: Sample 94_HE17W2-PL1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C2_AD010_indexed


title: Sample 93_HE17W2-FL2


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C2_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C2_AD002_indexed


title: Sample 91_HE17W-PONS2


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C2_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C1_AD012_indexed


title: Sample 90_HE17W-PONS1_3


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C2_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C3_AD008_indexed


title: Sample 89_HE16W-PONS


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C1_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C1_AD008_indexed


title: Sample 86_HE16W-PL


title: Sample 87_HE16W-OL


title: Sample 88_HE16W-TL


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C1_AD004_indexed


title: Sample 84_HE14W2-PONS


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C1_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C1_AD006_indexed


title: Sample 85_HE16W-FL


title: Sample 83_HE14W2-TL2


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C12_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C1_AD001_indexed


title: Sample 80_HE14W2-OL1


title: Sample 82_HE14W2-TL1


title: Sample 92_HE17W2-FL1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C12_AD008_indexed


title: Sample 81_HE14W2-OL2


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C7_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C12_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C12_AD012_indexed


title: Sample 79_HE14W2-PL2


title: Sample 76_HE14W2-FL1


title: Sample 75_HE14W-PONS2


title: Sample 77_HE14W2-FL2


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C11_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C11_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C11_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C11_AD008_indexed


title: Sample 73_HE13W3-PONS2


title: Sample 78_HE14W2-PL1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C12_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C10_AD010_indexed


title: Sample 72_HE13W3-PONS1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C11_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C10_AD012_indexed


title: Sample 71_HE13W2-PONS2


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C10_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C10_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C11_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C10_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B9_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C10_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C12_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B9_AD012_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C11_AD001_indexed


title: Sample 74_HE14W-PONS1


title: Sample 69_HE12W4-PONS2


title: Sample 67_HE12W4-TL


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B9_AD004_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B9_AD007_indexed


title: Sample 68_HE12W4-PONS1


title: Sample 70_HE13W2-PONS1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B9_AD002_indexed


title: D2w_10_15_2

type: RNA

city: Cincinnati

first: Douglas

last: Millay

state: OH

address: 240 Albert Sabin Way  MLC 7020

institute: Cincinnati Children's Hospital Medical Center

description: Gene expression data from D2w TA muscle (average myonuclei number: 100)

hyb_protocol: 3.0 ug of fragmented cDNA were hybridized to Clariom S Arrays, Mouse (Applied Biosystems). Probe arrays were incubated at 45°C for 17 hrs in the Hybridization Oven 640 (Affymetrix) rotating at 60 rpm. Probe arrays were washed and stained using the Fluidics Station 450 (Affymetrix), utilizing the fluidics protocol FS450-0007. The Stain and Antibody solutions are produced by Applied Biosystems and contained in the Genechip Hybridization Wash and Stain Kit.

scan_protocol: GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G

data_processing: The .cel were created by Command Console (Affymetrix). The .cel files were analyzed by Expression Console (Affymetrix) to create .sst-rma-gene-full.chp files.

label: biotin

source_name: TA muscle isolated from hind limb of D2w mice (tamoxifen at P6)

label_protocol: The GeneChip 3’ IVT Pico Reagent Kit is used to create biotin – labeled double -strand cDNA targets for hybridization to the Clariom S Arrays, Mouse.

extract_protocol:
cell isolation protocol: Tibialis anterior (TA) muscle isolated from hind-limb of mice and flash-frozen
Trizol-based extraction of total RNA was performed according to the manufacturer's instructions.

tag: genotype

value: 8c LacZ/fl; Pax7creER; mTmG/+

tag: tissue

value: Tibialis anterior (TA)


title: D1w_12_16_8

description: Gene expression data from D1w TA muscle (average myonuclei number: 55)

source_name: TA muscle isolated from hind limb of D1w mice (tamoxifen at P0)

value: 8c fl/fl; Pax7creER


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B8_AD010_indexed


title: D1w_12_16_5


title: Leaf 3, replicate 1, 29 days post inoculation

city: Wädenswil

first: Joël

middle: F

last: Pothier

address: Einsiedlerstrasse 31

department: Institute of Natural Resource Sciences

country: Switzerland

institute: Zurich University of Applied Sciences (ZHAW)

data_processing:
Basecalling performed with Casava by the Functional Genomics Centre Zurich at University of Zurich.
Sequenced reads were trimmed with Trimmomatic v. 0.36 in order to clip sequencing adapters and to remove low quality reads.
Reads were mapped with Bowtie 2 v. 2.3.2. and sorted subsequently with SAMtools v. 0.1.19.
Sorted files were processed with the Cufflinks RNA-Seq workflow v. 2.2.0 in order to obtain gene and transcript expression information per replicate and per treatment, for the bacterium and the plant separately. Gene expression levels were normalized using fragments per kilobase of exon per million mapped reads (FPKM) report values. The replicates were controlled for reproducibility using a principal component analysis (PCA), and the Cufflinks workflow was repeated after removing one outlier replicate for each time point.
The Cufflinks outputs were analyzed and visualized on the package cummeRbund v. 2.20.0 in R v. 3.4.3.
Genome_build: GCA_900183975.1
Genome_build: F_vesca_H4_v4.0.a1
Supplementary_files_format_and_content: Tab-delimited text files include gene FPKM values for two replicates per time point. Contains the summed FPKM of transcripts sharing each gene_id
Supplementary_files_format_and_content: Tab-delimited text files include gene-level differential expression  for two replicates per time point. Contains tests differences in the summed FPKM of transcripts sharing each gene_id

organism: Fragaria x ananassa

source_name: Leaf

growth_protocol: The plants were kept in a climate chamber with 16 hours of daylight with 22°C and a 70% relative humidity and an 8-hours nightime with 17°C and 80% relative humidity

extract_protocol:
Collected leaves were cut into three sections, used as triplicates of 100 mg initial material and extracted in parallel following a modified method of Christou et al. (2014). The extraction buffer (EB) was supplemented with freshly added 2% β-mercaptoethanol (Applichem GmbH, Germany) in order to preserve samples from RNase activity; the powdered leaves were transferred in ice-cold EB and let on ice for 15 min with shaking every 3 min, to allow the extraction buffer to access all plant material and avoid sedimentation of material, instead of directly adding phenol:chloroform:isoamyl alcohol (25:24:1 v/v; AppliChem GmbH, Germany); RNA samples were washed twice with 70% (v/v) ethanol in order to remove traces of phenols and other potentially interfering components; nucleic acid pellet was air-dried at room temperature for 2 min and subsequently dissolved in 30 µL RNase free water on ice for 15 min. Total RNA was treated with DNase I (Macherey-Nagel GmbH & Co., Germany) according to manufacturer’s protocol, followed by an ethanol-based RNA precipitation before resuspending the RNA in 30 µl RNase free water.
RNA samples were depleted of rRNA with both bacterial and plant Ribo-Zero rRNA Removal Kits (Illumina, San Diego, USA). cDNA libraries were prepared using a TruSeq Stranded mRNA Library Prep kit (Illumina, San Diego, USA). The cDNA libraries were prepared by the Functional Genomics Centre Zurich (University of Zurich, Switzerland).

treatment_protocol: Xanthomonas fragariae PD 885(T) was grown in liquid Wilbrinks-N medium for 48 hours with shaking at 220 rpm. Bacteria were collected by centrifugation and washed twice with Ringer solution. Washed bacteria were resuspended in Ringer solution and the concentration was adjusted to OD600 = 0.1. Bacteria were sprayed inoculated on the foliar part of the plants following the protocol described by Kastelein et al. (2014). The plants were placed in a plastic bag two days before and after inoculation in order to keep high relative humidity to allow opening of stomata and therefore favor infection.

value: cultivar Elsanta

tag: treatment

value: Sprayed inoculated with Xanthomonas fragariae PD885(T)

tag: disease state

value: 29 days post inoculation


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B8_AD007_indexed

value: male


title: Control_10_15_6

description: Gene expression data from control TA muscle (average myonuclei number: 233)

source_name: TA muscle isolated from hind limb of control mice (no tamoxifen)

value: 8c LacZ/fl; mTmG/+


title: Sample 65_HE12W4-OL


title: D2w_10_15_4


title: Control_11_6_2

value: 8c fl/fl; mTmG/+


title: Leaf 2, replicate 3, 29 days post inoculation

description:
genes_Fragaria.fpkm_tracking
genes_Xanthomonas_fragariae.fpkm_tracking
gene_exp_Fragaria.diff
gene_exp_Xanthomonas_fragariae.diff


title: Control_10_15_1


title: D2w_10_15_3


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B8_AD002_indexed

value: PIR


title: D1w_6_16_1

value: 8c fl/fl; Pax7creER; mTmG/+


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B8_AD012_indexed


title: Leaf 1, replicate 1, 29 days post inoculation


title: Sample 63_HE12W4-TL_FL


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B8_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B7_AD012_indexed


title: Sample 66_HE12W4-PL_OL


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B8_AD001_indexed


title: Leaf 3, replicate 2, 12 days post inoculation

value: 12 days post inoculation


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B7_AD010_indexed


title: Leaf 2, replicate 3, 12 days post inoculation


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B7_AD006_indexed


title: Sample 61_HE12W3-PONS


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B7_AD004_indexed


title: Leaf 1, replicate 3, 12 days post inoculation


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B7_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B8_AD004_indexed


title: Sample 64_HE12W4-PL

value: parietal lobe


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B5_AD008_indexed


title: Sample 59_HE12W3-OL2

value: occipital lobe


title: FE3

city: Bloemfontein

first: Oluwasegun

middle: Olalekan

last: Kuloyo

address: 200 Nelson mandela drive, Park west

department: Microbial Biochemical and Food Biotechnology

country: South Africa

institute: University of the Free State

description:
DMSO_Ethanol_and_Fluconazole_Ethanol.xlsx
DEvsFE.xlsx

data_processing:
Quality of sequences was analysed with FastQC v0.11.5
Low quality reads (<Q30) were discarded using PRINSEQ-lite v0.20.4
Sequences were aligned using TopHat2 v2.2.1 modified with fr-secondstrand, -r 250 mate-std- I 10000 -G option (Dutton et al., 2016), which gave a much better alignment rate.
Gene expression count tables were built from BAM files, created with TopHat2 using the BEDTools multicov command
Counts were used to evaluate the differential expression of genes with DESeq2; Cuffdiff  was also used to generate differential expression data using aligned reads obtained from TopHat2 which were assembled with Cufflinks and merged with Cuffmerge.
Genome_build: C. albicans SC5314 genome assembly 21 (Skrzypek et al., 2017)
Supplementary_files_format_and_content: tab-delimited text files include RPKM values for each Sample for Cuffdiff and a count table for DESeq2

organism: Candida albicans

source_name: cultures

growth_protocol: Preculture of Candida albicans SC5314  in yeast nitrogen base was grown under biofilm forming conditions in RPMI medium

extract_protocol:
Total RNA was extracted using the RNeasy protect mini kit (Qiagen), while the DNA present was removed with RNase-Free DNase Set (Qiagen). For the preparation of sequencing library, ribosomal RNA was removed from 1 µg of RNA per sample, using the Illumina Ribo-zero rRNA removal kit, and purified with an Agencourt RNAClean XP kit.
Indexed libraries were prepared using the ScriptSeqTM v2 RNA-Seq Library Preparation Kit and ScriptSeqTM Index PCR Primers-Set 1 (Illumina). The library size was profiled with the Bioanalyzer High Sensitivity Assay Kit (Agilent) and quantified with the Qubit HS DNA Assay Kit. The samples were diluted and spiked with a Phix control library (Illumina).

treatment_protocol: Biofilms were treated differently with arachidonic acid (dissolved in EtOH) and DMSO; fluconazole (dissolved in DMSO) and EtOH; fluconazole (dissolved in DMSO) and arachidonic acid (dissolved in EtOH) and DMSO and EtOH.

tag: developmental stage

value: Biofilm


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B5_AD012_indexed


title: Sample 60_HE12W3-TL

value: temporal lobe


title: FE2

value: fluconazole (dissolved in DMSO) and EtOH


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B5_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B5_AD006_indexed


title: FE1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_C10_AD002_indexed


title: Sample 58_HE12W3-OL1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B7_AD007_indexed


title: FA3

description:
DMSO_Ethanol_and_Fluconazole_AA.xlsx
DEvsFA.xlsx

value: fluconazole (dissolved in DMSO) and arachidonic acid (dissolved in EtOH) and DMSO and EtOH


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B5_AD002_indexed


title: Sample 62_HE12W4-FL

value: frontal lobe


title: Sample 57_HE12W3-PL


title: Sample 56_HE12W3-FL_PL

value: frontal  lobe and parietal lobe


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B5_AD001_indexed


title: Sample 54_HE12W2-PONS2

value: pons


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B4_AD012_indexed


title: FA1


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B4_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B4_AD007_indexed


title: Sample 55_HE12W3-FL


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B4_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B4_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B4_AD002_indexed


title: DA2

description:
DMSO_Ethanol_and_DMSO_AA.xlsx
DEvsDA.xlsx

value: arachidonic acid (dissolved in EtOH) and DMSO


title: Sample 53_HE12W2-PONS1


title: Sample 52_HE12W2-TL


title: DA3


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B3_AD008_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B4_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B3_AD012_indexed


title: FA2


title: DE3

description:
DEvsDA.xlsx
DEvsFA.xlsx
DEvsFE.xlsx

value: control


title: DE2

description:
DEvsDA.xlsx
DEvsFA.xlsx
DEvsFE.xlsx


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B3_AD006_indexed

value: male


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B3_AD007_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B3_AD004_indexed


title: Sample 51_HE12W2-OL_TL

value: occipital lobe and temporal lobe


title: Sample 50_HE12W2-OL


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B3_AD002_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B3_AD010_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B3_AD001_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B4_AD004_indexed


title: Sample 49_HE12W2-PL


title: DE1

description:
DEvsDA.xlsx
DEvsFA.xlsx
DEvsFE.xlsx


title: Sample 48_HE12W2-FL_PL


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B2_AD006_indexed


title: 180408_CEMBA_mm_P56_P63_3E_CEMBA180326_3E_1_CEMBA180326_3E_2_B2_AD010_indexed