title: D35 EAE Atg7 Wt P9210_170

status: Public on Oct 15 2020

type: SRA

city: Stockholm

first: Ewoud

last: Ewing

address: CMM L8:05, Karolinska University Hospital

department: Clinical Neuroscience

country: Sweden

institute: Karolinska Institutet

description:
D35 EAE Atg7 Wt
P9210_170
S31

library_source: transcriptomic

data_processing:
Clustering was done by 'onboard clustering' and samples were sequenced on HiSeq2500 (HiSeq Control Software 2.2.58/RTA 1.18.64) with a 1x51 setup using 'HiSeq Rapid SBS Kit v2' chemistry. The Bcl to FastQ conversion was performed using None from the CASAVA software suite. The quality scale used is Sanger / phred33 / Illumina 1.8+.
The Bcl to FastQ conversion was performed using bcl2fastq from the CASAVA software suite. The quality scale used is Sanger / phred33 / Illumina 1.8+.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to GRCm8 whole genome using STAR in the scilifelab NGI-RNAseq nextlow pipeline
https://github.com/SciLifeLab/NGI-RNAseq
Genome_build: GRCm38
Supplementary_files_format_and_content: ; seperated csv file include Dseq2 normalized counts for every sample

molecule: total RNA

organism: Mus musculus

source_name: Microglia

extract_protocol:
CNS cells were extracted using Neural Tissue dissociation kit T (Miltenyi Biotech) and sorted using a BD Influx cell sorter. Microglia were sorted as Live, CD11b+ CD45Intermediate(Int) Ly6G- and/or eYFP+. Sorted microglia were lysed in RLT betamercaptoethanol and pooled 1:1 female and male. RNA was prepared using an RNeasy Mini Kit (Qiagen) followed by quality control assessed with a Bioanalyzer 2100 (Agilent). All samples included had high quality RNA (RIN = 8.5–10). RNA was amplified with a SMARTer Stranded Total RNA-Seq Kit–Pico Input Mammalian (Clontech).
RNA libraries were prepared for sequencing using the SMARTer Stranded Total RNA-seq Kit - Pico Input Mammalian (Clontech).

treatment_protocol: Atg7fl/fl Cx3cr1CreERT and Atg7wt/wt Cx3cr1CreERT2 mice were treated with 4mg Tamoxifen three times with 48h intervals to induce recombination. EAE was induced minimum 18 days post Tamoxifen treatment using subcutaneous injections of recombinant mouse myelin oligodendrocyte glycoprotein (rmMOG) aa1-125 and Pertussis toxin i.p.

tag: strain

tag: knockout status

tag: age

value: Young

tag: index

value: `D707-D504 (CTGAAGCT-GGCTCTGA)`


title: D35 EAE Atg7 KO P9210_168

description:
D35 EAE Atg7 KO
P9210_168
S30

value: `D706-D504 (GAATTCGT-GGCTCTGA)`


title: D21 EAE Atg7 Wt P9210_166

description:
D21 EAE Atg7 Wt
P9210_166
S29

value: `D705-D504 (ATTCAGAA-GGCTCTGA)`


title: D21 EAE Atg7 KO P9210_164

description:
D21 EAE Atg7 KO
P9210_164
S28

value: `D704-D504 (GAGATTCC-GGCTCTGA)`


title: Naive Atg7 Wt P9210_162

description:
Naive Atg7 Wt
P9210_162
S27

value: `D703-D504 (CGCTCATT-GGCTCTGA)`


title: Naive Old P9210_158

description:
Naive Old
P9210_158
S25

value: Old

value: `D701-D504 (ATTACTCG-GGCTCTGA)`


title: Naive Atg7 KO P9210_160

description:
Naive Atg7 KO
P9210_160
S26

value: `D702-D504 (TCCGGAGA-GGCTCTGA)`


title: D35 EAE Atg7 Wt P9210_154

description:
D35 EAE Atg7 Wt
P9210_154
S23

value: `D711-D503 (TCTCGCGC-CCTATCCT)`


title: D35 EAE Old P9210_156

description:
D35 EAE Old
P9210_156
S24

value: `D712-D503 (AGCGATAG-CCTATCCT)`


title: D35 EAE Atg7 KO P9210_152

description:
D35 EAE Atg7 KO
P9210_152
S22

value: `D710-D503 (TCCGCGAA-CCTATCCT)`


title: D21 EAE Atg7 KO P9210_148

description:
D21 EAE Atg7 KO
P9210_148
S20

value: `D708-D503 (TAATGCGC-CCTATCCT)`


title: D21 EAE Atg7 Wt P9210_150

description:
D21 EAE Atg7 Wt
P9210_150
S21

value: `D709-D503 (CGGCTATG-CCTATCCT)`


title: Naive Atg7 KO P9210_144

description:
Naive Atg7 KO
P9210_144
S18

value: `D706-D503 (GAATTCGT-CCTATCCT)`


title: D35 EAE Old P9210_140

description:
D35 EAE Old
P9210_140
S16

value: `D704-D502 (GAGATTCC-ATAGAGGC)`


title: Naive Old P9210_142

description:
Naive Old
P9210_142
S17

value: `D705-D503 (ATTCAGAA-CCTATCCT)`


title: D35 EAE Atg7 Wt P9210_138

description:
D35 EAE Atg7 Wt
P9210_138
S15

value: Young

value: `D703-D502 (CGCTCATT-ATAGAGGC)`


title: D21 EAE Atg7 KO P9210_132

description:
D21 EAE Atg7 KO
P9210_132
S12

value: `D712-D502 (AGCGATAG-ATAGAGGC)`


title: D21 EAE Atg7 Wt P9210_134

description:
D21 EAE Atg7 Wt
P9210_134
S13

value: `D701-D502 (ATTACTCG-ATAGAGGC)`


title: D35 EAE Atg7 KO P9210_136

description:
D35 EAE Atg7 KO
P9210_136
S14

value: `D702-D502 (TCCGGAGA-ATAGAGGC)`


title: Naive Atg7 Wt P9210_130

description:
Naive Atg7 Wt
P9210_130
S11

value: `D711-D502 (TCTCGCGC-ATAGAGGC)`


title: Naive Atg7 KO P9210_128

description:
Naive Atg7 KO
P9210_128
S10

value: `D710-D502 (TCCGCGAA-ATAGAGGC)`


title: D35 EAE Atg7 KO P9210_120

description:
D35 EAE Atg7 KO
P9210_120
S6

value: `D706-D501 (GAATTCGT-TATAGCCT)`


title: Naive Old P9210_110

description:
Naive Old
P9210_110
S1

value: Old

value: `D701-D501 (ATTACTCG-TATAGCCT)`


title: Naive Old P9210_126

description:
Naive Old
P9210_126
S9

value: `D709-D502 (CGGCTATG-ATAGAGGC)`


title: Naive Atg7 KO P9210_112

description:
Naive Atg7 KO
P9210_112
S2

value: `D702-D501 (TCCGGAGA-TATAGCCT)`


title: D21 EAE Atg7 KO P9210_116

description:
D21 EAE Atg7 KO
P9210_116
S4

value: `D704-D501 (GAGATTCC-TATAGCCT)`


title: D35 EAE Old P9210_124

description:
D35 EAE Old
P9210_124
S8

value: `D708-D501 (TAATGCGC-TATAGCCT)`


title: Naive Atg7 Wt P9210_114

description:
Naive Atg7 Wt
P9210_114
S3

value: `D703-D501 (CGCTCATT-TATAGCCT)`


title: D35 EAE Atg7 Wt P9210_122

description:
D35 EAE Atg7 Wt
P9210_122
S7

value: `D707-D501 (CTGAAGCT-TATAGCCT)`


title: Healthy Antral2

status: Public on Aug 31 2020

city: Guangzhou

first: Li

last: Meng

state: Guangdong

address: Wushan Road 483

country: China

institute: South China Agricultural University

data_processing:
paired-end reads were harvested from the Illumina HiSeq 4000 sequencer; quality control was performed by Q30.
After 3’adaptor-trimming, low-quality reads were removed by the use of cut adapt software (v1.9.3). The remaining high-quality trimmed reads were used to analyze circRNAs.
circRNAs were detected and identified with find-circ software
Genome_build: Sscrofa10.2/SusScr3
Supplementary_files_format_and_content: excel format, Number of raw junction read

organism: Sus scrofa

source_name: Ovarian antral follicle

extract_protocol:
Total RNA from granulosa cells of 3 randomly selected samples from each of HA and AA follicles was isolated using TRIzol (Life Technologies, Shanghai, China) and used for RNA-sequencing (RNA-seq).
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: tissue

value: healthy antral (HA) follicle

tag: cell type

value: isolated mural porcine granulosa cells


title: Healthy Antral1


title: Atretic Antral2

value: atretic antral (AA) follicles


title: Naive Atg7 Wt P9210_146

description:
Naive Atg7 Wt
P9210_146
S19

value: Young

value: `D707-D503 (CTGAAGCT-CCTATCCT)`


title: Atretic Antral1


title: genomic DNA from peripheral blood leukocytes 1767

type: genomic

city: Ann Arbor

first: Minjung

last: Kho

state: Michigan

address: School of Public Health University of Michigan 1415 Washington Heights

country: USA

institute: University of Michigan

hyb_protocol: bisulphite converted DNA was amplified, fragmented and hybridised to IIllumina Infinium HumanMethylation450 BeadChip or EPIC BeadChip using standard Illumina protocol

scan_protocol: Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting

data_processing: For each chip, the Minfi R package was used to perform background correction and normalization. The regression on correlated probes (RCP) method was then used to adjust probe-type bias, and ComBat was used to remove confounding effects due to batch or other technical covariates. Data from the two platforms were combined, and ComBat was used to remove the platform effect. Age, gender, and phase effect was preserved when removing platform difference.

label: Cy5 and Cy3

molecule: genomic DNA

organism: Homo sapiens

source_name: peripheral blood leukocytes

label_protocol: Standard Illumina Protocol

extract_protocol: genomic DNA was extracted from stored peripheral blood leukocytes using AutoGen FlexStar (AutoGen, Holliston, MA) and DNA was bisulfite converted using the EZ DNA Methylation Kit (Zymo Research, Irvine, CA)

value: peripheral blood leukocytes

tag: gender

value: F

tag: age(yrs)

tag: systolic blood pressure (mmhg)

tag: diastolic blood pressure (mmhg)


title: genomic DNA from peripheral blood leukocytes 1759


title: genomic DNA from peripheral blood leukocytes 1772


title: genomic DNA from peripheral blood leukocytes 1738


title: genomic DNA from peripheral blood leukocytes 1758


title: genomic DNA from peripheral blood leukocytes 1746


title: genomic DNA from peripheral blood leukocytes 1734

value: M


title: genomic DNA from peripheral blood leukocytes 1719


title: genomic DNA from peripheral blood leukocytes 1720


title: genomic DNA from peripheral blood leukocytes 1727


title: genomic DNA from peripheral blood leukocytes 1713


title: Healthy Antral3


title: Atretic Antral3


title: genomic DNA from peripheral blood leukocytes 1692


title: genomic DNA from peripheral blood leukocytes 1618


title: genomic DNA from peripheral blood leukocytes 1666


title: genomic DNA from peripheral blood leukocytes 1602


title: genomic DNA from peripheral blood leukocytes 1626


title: genomic DNA from peripheral blood leukocytes 1615


title: genomic DNA from peripheral blood leukocytes 1678


title: genomic DNA from peripheral blood leukocytes 1597


title: genomic DNA from peripheral blood leukocytes 1583


title: genomic DNA from peripheral blood leukocytes 1587


title: genomic DNA from peripheral blood leukocytes 1584


title: genomic DNA from peripheral blood leukocytes 1611


title: genomic DNA from peripheral blood leukocytes 1578


title: genomic DNA from peripheral blood leukocytes 1567


title: genomic DNA from peripheral blood leukocytes 1582


title: genomic DNA from peripheral blood leukocytes 1561


title: genomic DNA from peripheral blood leukocytes 1560


title: genomic DNA from peripheral blood leukocytes 1715


title: genomic DNA from peripheral blood leukocytes 1554


title: genomic DNA from peripheral blood leukocytes 1566


title: genomic DNA from peripheral blood leukocytes 1551


title: genomic DNA from peripheral blood leukocytes 1546


title: genomic DNA from peripheral blood leukocytes 1649


title: genomic DNA from peripheral blood leukocytes 1528


title: genomic DNA from peripheral blood leukocytes 1524


title: genomic DNA from peripheral blood leukocytes 1505


title: genomic DNA from peripheral blood leukocytes 1496


title: genomic DNA from peripheral blood leukocytes 1710


title: genomic DNA from peripheral blood leukocytes 1492


title: genomic DNA from peripheral blood leukocytes 1483


title: genomic DNA from peripheral blood leukocytes 1463


title: genomic DNA from peripheral blood leukocytes 1400


title: genomic DNA from peripheral blood leukocytes 1404


title: genomic DNA from peripheral blood leukocytes 1467


title: genomic DNA from peripheral blood leukocytes 1433


title: genomic DNA from peripheral blood leukocytes 1396


title: genomic DNA from peripheral blood leukocytes 1377


title: genomic DNA from peripheral blood leukocytes 1363


title: genomic DNA from peripheral blood leukocytes 1360


title: genomic DNA from peripheral blood leukocytes 1534


title: genomic DNA from peripheral blood leukocytes 1355


title: genomic DNA from peripheral blood leukocytes 1352


title: genomic DNA from peripheral blood leukocytes 1361


title: genomic DNA from peripheral blood leukocytes 1343


title: genomic DNA from peripheral blood leukocytes 1317


title: genomic DNA from peripheral blood leukocytes 1329


title: genomic DNA from peripheral blood leukocytes 1331


title: genomic DNA from peripheral blood leukocytes 1314


title: genomic DNA from peripheral blood leukocytes 1323


title: genomic DNA from peripheral blood leukocytes 1307


title: genomic DNA from peripheral blood leukocytes 1304


title: genomic DNA from peripheral blood leukocytes 1489


title: genomic DNA from peripheral blood leukocytes 1288


title: genomic DNA from peripheral blood leukocytes 1282


title: genomic DNA from peripheral blood leukocytes 1274


title: genomic DNA from peripheral blood leukocytes 1273


title: genomic DNA from peripheral blood leukocytes 1449


title: genomic DNA from peripheral blood leukocytes 1270


title: genomic DNA from peripheral blood leukocytes 1359


title: genomic DNA from peripheral blood leukocytes 1256


title: genomic DNA from peripheral blood leukocytes 1264


title: genomic DNA from peripheral blood leukocytes 1265


title: genomic DNA from peripheral blood leukocytes 1227


title: genomic DNA from peripheral blood leukocytes 1224


title: genomic DNA from peripheral blood leukocytes 1203


title: genomic DNA from peripheral blood leukocytes 1187


title: genomic DNA from peripheral blood leukocytes 1186


title: genomic DNA from peripheral blood leukocytes 1214


title: genomic DNA from peripheral blood leukocytes 1180


title: genomic DNA from peripheral blood leukocytes 1174


title: genomic DNA from peripheral blood leukocytes 1178


title: genomic DNA from peripheral blood leukocytes 1301


title: genomic DNA from peripheral blood leukocytes 1161


title: genomic DNA from peripheral blood leukocytes 1158


title: genomic DNA from peripheral blood leukocytes 1150


title: genomic DNA from peripheral blood leukocytes 1126


title: genomic DNA from peripheral blood leukocytes 1131


title: genomic DNA from peripheral blood leukocytes 1139


title: genomic DNA from peripheral blood leukocytes 1118


title: genomic DNA from peripheral blood leukocytes 1111


title: genomic DNA from peripheral blood leukocytes 1244


title: genomic DNA from peripheral blood leukocytes 1218


title: genomic DNA from peripheral blood leukocytes 1106


title: genomic DNA from peripheral blood leukocytes 1107


title: genomic DNA from peripheral blood leukocytes 1196


title: genomic DNA from peripheral blood leukocytes 1093


title: genomic DNA from peripheral blood leukocytes 1089


title: genomic DNA from peripheral blood leukocytes 1095


title: genomic DNA from peripheral blood leukocytes 1074


title: genomic DNA from peripheral blood leukocytes 1181


title: genomic DNA from peripheral blood leukocytes 1067


title: genomic DNA from peripheral blood leukocytes 1167


title: genomic DNA from peripheral blood leukocytes 1206


title: genomic DNA from peripheral blood leukocytes 1054


title: genomic DNA from peripheral blood leukocytes 1052


title: genomic DNA from peripheral blood leukocytes 1064


title: genomic DNA from peripheral blood leukocytes 1045


title: genomic DNA from peripheral blood leukocytes 1040


title: genomic DNA from peripheral blood leukocytes 1151


title: genomic DNA from peripheral blood leukocytes 1026


title: genomic DNA from peripheral blood leukocytes 1022


title: genomic DNA from peripheral blood leukocytes 1017


title: genomic DNA from peripheral blood leukocytes 1016


title: genomic DNA from peripheral blood leukocytes 1020


title: genomic DNA from peripheral blood leukocytes 1012


title: genomic DNA from peripheral blood leukocytes 1009


title: genomic DNA from peripheral blood leukocytes 1008


title: genomic DNA from peripheral blood leukocytes 1099


title: genomic DNA from peripheral blood leukocytes 1011


title: genomic DNA from peripheral blood leukocytes 1001


title: genomic DNA from peripheral blood leukocytes 998


title: genomic DNA from peripheral blood leukocytes 1062


title: genomic DNA from peripheral blood leukocytes 974


title: genomic DNA from peripheral blood leukocytes 973


title: genomic DNA from peripheral blood leukocytes 1044


title: genomic DNA from peripheral blood leukocytes 976


title: genomic DNA from peripheral blood leukocytes 986


title: genomic DNA from peripheral blood leukocytes 1030


title: genomic DNA from peripheral blood leukocytes 983


title: genomic DNA from peripheral blood leukocytes 951


title: genomic DNA from peripheral blood leukocytes 970


title: genomic DNA from peripheral blood leukocytes 953


title: genomic DNA from peripheral blood leukocytes 957


title: genomic DNA from peripheral blood leukocytes 1029


title: genomic DNA from peripheral blood leukocytes 949


title: genomic DNA from peripheral blood leukocytes 944


title: genomic DNA from peripheral blood leukocytes 1019


title: genomic DNA from peripheral blood leukocytes 941


title: genomic DNA from peripheral blood leukocytes 934


title: genomic DNA from peripheral blood leukocytes 906


title: genomic DNA from peripheral blood leukocytes 1000


title: genomic DNA from peripheral blood leukocytes 995


title: genomic DNA from peripheral blood leukocytes 996


title: genomic DNA from peripheral blood leukocytes 843


title: genomic DNA from peripheral blood leukocytes 832


title: genomic DNA from peripheral blood leukocytes 794


title: genomic DNA from peripheral blood leukocytes 777


title: genomic DNA from peripheral blood leukocytes 782


title: genomic DNA from peripheral blood leukocytes 770


title: genomic DNA from peripheral blood leukocytes 966


title: genomic DNA from peripheral blood leukocytes 761


title: genomic DNA from peripheral blood leukocytes 751


title: genomic DNA from peripheral blood leukocytes 753


title: genomic DNA from peripheral blood leukocytes 760


title: genomic DNA from peripheral blood leukocytes 933


title: genomic DNA from peripheral blood leukocytes 841


title: genomic DNA from peripheral blood leukocytes 747


title: genomic DNA from peripheral blood leukocytes 740


title: genomic DNA from peripheral blood leukocytes 716


title: genomic DNA from peripheral blood leukocytes 722


title: genomic DNA from peripheral blood leukocytes 703


title: genomic DNA from peripheral blood leukocytes 706


title: genomic DNA from peripheral blood leukocytes 712


title: genomic DNA from peripheral blood leukocytes 685


title: genomic DNA from peripheral blood leukocytes 681


title: genomic DNA from peripheral blood leukocytes 680


title: genomic DNA from peripheral blood leukocytes 671


title: genomic DNA from peripheral blood leukocytes 668


title: genomic DNA from peripheral blood leukocytes 657


title: genomic DNA from peripheral blood leukocytes 646


title: genomic DNA from peripheral blood leukocytes 647


title: genomic DNA from peripheral blood leukocytes 639


title: genomic DNA from peripheral blood leukocytes 648


title: genomic DNA from peripheral blood leukocytes 617


title: genomic DNA from peripheral blood leukocytes 619


title: genomic DNA from peripheral blood leukocytes 579


title: genomic DNA from peripheral blood leukocytes 592


title: genomic DNA from peripheral blood leukocytes 613


title: genomic DNA from peripheral blood leukocytes 588


title: genomic DNA from peripheral blood leukocytes 606


title: genomic DNA from peripheral blood leukocytes 609


title: genomic DNA from peripheral blood leukocytes 567


title: genomic DNA from peripheral blood leukocytes 714


title: genomic DNA from peripheral blood leukocytes 564


title: genomic DNA from peripheral blood leukocytes 573


title: genomic DNA from peripheral blood leukocytes 575


title: genomic DNA from peripheral blood leukocytes 577


title: genomic DNA from peripheral blood leukocytes 562


title: genomic DNA from peripheral blood leukocytes 561


title: genomic DNA from peripheral blood leukocytes 559


title: genomic DNA from peripheral blood leukocytes 544


title: genomic DNA from peripheral blood leukocytes 541


title: genomic DNA from peripheral blood leukocytes 536


title: genomic DNA from peripheral blood leukocytes 556


title: genomic DNA from peripheral blood leukocytes 524


title: genomic DNA from peripheral blood leukocytes 523


title: genomic DNA from peripheral blood leukocytes 520


title: genomic DNA from peripheral blood leukocytes 487


title: genomic DNA from peripheral blood leukocytes 461


title: genomic DNA from peripheral blood leukocytes 475


title: genomic DNA from peripheral blood leukocytes 459


title: genomic DNA from peripheral blood leukocytes 614


title: genomic DNA from peripheral blood leukocytes 443


title: genomic DNA from peripheral blood leukocytes 455


title: genomic DNA from peripheral blood leukocytes 446


title: genomic DNA from peripheral blood leukocytes 432


title: genomic DNA from peripheral blood leukocytes 435


title: genomic DNA from peripheral blood leukocytes 462


title: genomic DNA from peripheral blood leukocytes 424


title: genomic DNA from peripheral blood leukocytes 415


title: genomic DNA from peripheral blood leukocytes 440


title: genomic DNA from peripheral blood leukocytes 448


title: genomic DNA from peripheral blood leukocytes 423


title: genomic DNA from peripheral blood leukocytes 397


title: genomic DNA from peripheral blood leukocytes 414


title: genomic DNA from peripheral blood leukocytes 386


title: genomic DNA from peripheral blood leukocytes 385


title: genomic DNA from peripheral blood leukocytes 383


title: genomic DNA from peripheral blood leukocytes 438


title: genomic DNA from peripheral blood leukocytes 381


title: genomic DNA from peripheral blood leukocytes 382


title: genomic DNA from peripheral blood leukocytes 396


title: genomic DNA from peripheral blood leukocytes 402


title: genomic DNA from peripheral blood leukocytes 380


title: genomic DNA from peripheral blood leukocytes 425


title: genomic DNA from peripheral blood leukocytes 377


title: genomic DNA from peripheral blood leukocytes 376


title: genomic DNA from peripheral blood leukocytes 379


title: genomic DNA from peripheral blood leukocytes 359


title: genomic DNA from peripheral blood leukocytes 370


title: genomic DNA from peripheral blood leukocytes 371


title: genomic DNA from peripheral blood leukocytes 342


title: genomic DNA from peripheral blood leukocytes 346


title: genomic DNA from peripheral blood leukocytes 418


title: genomic DNA from peripheral blood leukocytes 339


title: genomic DNA from peripheral blood leukocytes 316


title: genomic DNA from peripheral blood leukocytes 357


title: genomic DNA from peripheral blood leukocytes 333


title: genomic DNA from peripheral blood leukocytes 259


title: genomic DNA from peripheral blood leukocytes 186


title: genomic DNA from peripheral blood leukocytes 184


title: genomic DNA from peripheral blood leukocytes 203


title: genomic DNA from peripheral blood leukocytes 166


title: genomic DNA from peripheral blood leukocytes 106


title: genomic DNA from peripheral blood leukocytes 149


title: genomic DNA from peripheral blood leukocytes 110


title: genomic DNA from peripheral blood leukocytes 173


title: genomic DNA from peripheral blood leukocytes 100


title: genomic DNA from peripheral blood leukocytes 139


title: genomic DNA from peripheral blood leukocytes 94


title: genomic DNA from peripheral blood leukocytes 138


title: genomic DNA from peripheral blood leukocytes 75


title: genomic DNA from peripheral blood leukocytes 73


title: genomic DNA from peripheral blood leukocytes 67


title: genomic DNA from peripheral blood leukocytes 68


title: genomic DNA from peripheral blood leukocytes 61


title: genomic DNA from peripheral blood leukocytes 59


title: genomic DNA from peripheral blood leukocytes 62


title: genomic DNA from peripheral blood leukocytes 51


title: genomic DNA from peripheral blood leukocytes 53


title: genomic DNA from peripheral blood leukocytes 45


title: genomic DNA from peripheral blood leukocytes 35


title: genomic DNA from peripheral blood leukocytes 38


title: genomic DNA from peripheral blood leukocytes 31


title: genomic DNA from peripheral blood leukocytes 27


title: genomic DNA from peripheral blood leukocytes 15


title: genomic DNA from peripheral blood leukocytes 20


title: genomic DNA from peripheral blood leukocytes 10


title: genomic DNA from peripheral blood leukocytes 11


title: genomic DNA from peripheral blood leukocytes 14


title: genomic DNA from peripheral blood leukocytes 6


title: Batf3.ko_48h_3

city: Würzburg

first: Wolfgang

last: Kastenmüller

address: Versbacher Str. 9

country: Germany

institute: University of Wuerzburg

data_processing:
Demultiplexed FASTQ files were generated and reads were quality filtered with Ilumina bcl2fastq version 2.2.0.
Sequenced reads were trimmed for adaptor sequence with Skewer (version 0.2.2), then mapped to GRCm38.98 whole genome using STAR aligner version 2.7 with default parameters for paired-end reads.
Raw counts were generated using featureCounts from the Rsubread R package.
Genome_build: GRCm38.98
Supplementary_files_format_and_content: tab-delimited text files include non-normalized counts values for each sample, including gene_id, Ensembl ID and biotype for each gene.

source_name: CD8 T cells

extract_protocol:
RNeasy Mini Kit (Qiagen) following manufactures instruction.
DNA libraries suitable for sequencing were prepared from 100 ng of total RNA with oligo-dT capture beads for poly-A-mRNA enrichment using the TruSeq Stranded mRNA Library Preparation Kit (Illumina) according to manufacturer’s instructions.

treatment_protocol: Splenocytes were enriched for CD8 T cells and stimulated in IL-15 (50ng/ml) supplemented medium with 1 μg/ml plate-bound anti-CD3e (clone 2C11) plus 1 μg/ml anti-CD28 Abs (clone 37.51, both BioXCell) for either 48h or 72h.

value: spleen

value: CD8 T cells

tag: genotype

value: Batf3 ko

tag: timepoint


title: Batf3.ko_72h_1


title: wt_72h_2

value: wt


title: Batf3.ko_48h_2


title: Batf3.ko_72h_2


title: Batf3.ko_48h_4


title: wt_48h_3


title: Batf3.ko_48h_1


title: Batf3.ko_72h_4


title: wt_72h_4


title: wt_48h_2


title: wt_48h_1


title: Batf3.ko_72h_3


title: wt_72h_3


title: wt_72h_1


title: qmut4

city: Los Angeles

first: Quan

last: Wen

state: Ca

address: 2250 Alcazar St. CSA 123

institute: University of Southern California

data_processing:
Illumina Casava1.8 software used for basecalling.
Sequenced reads were trimmed for bases with Phred score<20 from both ends, mapped to mm10 whole genome and transcriptome using STAR 2.6.1d, quantified with Gencode M20 annotation, and normalized using Upper quartile.
Differential expression was carried out using Gene-specific analysis by Partek flow with default settings (Partek Inc., USA).
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text files of number of reads aligned to each gene for each sample.

source_name: lower 1st molar

extract_protocol:
The apical halves of lower first molars was collected for RNA isolation with an RNeasy Micro Kit (QIAGEN).
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: Tamoxifen was dissolved in corn oil  at 20 mg/ml and injected intraperitoneally at a dose of 1.5mg/10g body weight at PN3.5.

tag: Stage


title: qmut2


title: wt_48h_4


title: qmut3


title: qmut5


title: qctrl3


title: qctrl4


title: qctrl2


title: qctrl5


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F9_AD006_indexed

city: La Jolla

first: Joseph

middle: R

last: Ecker

state: CA

address: 10010 North Torrey Pines Road

department: Genomic Analysis Laboratory

institute: HHMI-Salk-Institute

library_source: genomic

data_processing:
Library strategy: snmC-seq2
Reads trimed with Cutadapt for adapters and low quality bases (Phred score >= 20)
The resulting files are mapped to in-silico bisulfite converted mm10 reference genome using Bismark.
The raw BAM file will be filtered using samtools to filter reads by MAPQ > 10 and use Picard to remove PCR duplicates
Tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls will be generated with in-house developing package using the filtered BAM files
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls. Columns are: 1. Chromosome, 2. Position, 3. Strand, 4. Cytosin Context, 5. methylated base call, 6. total mapped base call, 7. not used, place holder column

source_name: C57BL/6J Male P56 Mouse Brain

growth_protocol: All mice are C57BL/6J Male, brain dissected in P56

extract_protocol:
the brain of P56 male C57BL/6J mouse will be removed and cut into 600 microns thick coronal sections using a tissue matrix. Then each region will be microdissected from the coronal tissue sections based on identified landmarks and brain atlas coordinates, as defined in Allen brain atlas CCF3 (Avaliable at: http://atlas.brain-map.org). For each dissection region, the tissue from several littermate mice will be combined together into to separate replicate groups. The number of animals in a replicate depends on the size of the tissue. Nuclei preparation will be stained with the fluorescently labeled anti-NeuN body and nucleic acid stain Hoechst 33342.
Library prepared following protocol discribed in Luo, Chongyuan, Angeline Rivkin, Jingtian Zhou, Justin P. Sandoval, Laurie Kurihara, Jacinta Lucero, Rosa Castanon, et al. 2018. “Robust Single-Cell DNA Methylome Profiling with snmC-seq2.” Nature Communications 9 (1): 3824.

tag: brain region

value: SSp

tag: Sex

value: male


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_1_CEMBA180529_5B_2_B7_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_1_CEMBA180529_5B_2_D5_AD002_indexed


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title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_G1_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_G11_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_G1_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_G3_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_G11_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_G2_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F9_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_G10_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F9_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F9_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F9_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_G11_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F8_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F8_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_G10_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F9_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F8_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_G10_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F8_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_G11_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F7_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F7_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F7_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_G10_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_G10_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F7_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F8_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_G10_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F7_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_G10_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F6_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F7_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F7_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F6_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F6_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F8_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F6_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F9_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F6_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F6_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F5_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F5_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F8_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F6_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F5_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F5_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F5_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F4_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F5_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F4_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F4_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F4_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F4_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F4_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F4_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F6_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F5_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F2_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F3_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F2_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F1_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F2_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F3_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F3_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F2_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F12_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F3_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F2_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F1_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F3_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F1_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F2_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F1_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F12_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F3_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F1_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F11_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F1_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F12_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F11_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F11_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F11_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F11_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F10_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F10_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F11_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F10_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F10_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E9_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F10_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E9_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_G10_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F11_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E9_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E8_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F10_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E8_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E9_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E8_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E8_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E8_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E7_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E9_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E8_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E7_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E7_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E7_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E7_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E7_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E8_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E7_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F11_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E7_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E6_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E6_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E6_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E5_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E5_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E4_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E5_AD001_indexed


title: PbCreGata3f/f_P4

city: Montreal

first: mathieu

last: tremblay

state: QC

address: 2950 Chemin de Polytechnique, pav marcelle-coutu 1432

country: Canada

institute: Université de Montréal/IRIC

data_processing:
The sequencing reads were pseudo aligned to the mouse reference genome (mm10) using default parameters in Kallisto (Bray, Pimentel, Melsted, & Pachter, 2016).
Transcripts were annotated using Ensembl release 89.
Abundance estimate and bootstrap values generated by Kallisto were used for expression quantification (Bray et al., 2016).
Maps of sequencing reads were generated using R and the ggplot2 package (version 1), and bedtools (Quinlan & Hall, 2010).
Genome_build: mm10
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

source_name: Organoid

growth_protocol: Basal cells were plated  in advanced DMEM/F12 50% matrigel and grown in organoid media composed of WIT basic media (Cellaria) supplemented with 10 ng/ml EGF, 25 ug/ml BPE, 1X B27 (Life Technologies) and 10 uM Y-27632.

extract_protocol:
Total RNA was extracted from organoid cultures using a RNeasy micro kit (Qiagen).
Sequencing libraries were prepared using the TruSeq Stranded Total RNA Sample Preparation Kit (Illumina TS-122-2301, San Diego, California, United States) following depletion or ribosomal and fragmented RNA.

value: prostate organoids

tag: passage

tag: growth

value: 4 days


title: PbCreGata3f/f_P3

tag: strain


title: Wild type_P3

value: Wild type


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E5_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E5_AD004_indexed


title: PbCreGata3f/f_P2


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E6_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E5_AD012_indexed


title: PbCreGata3f/f_P0


title: Wild type_P2


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E4_AD010_indexed


title: Wild type_P0


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E4_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E6_AD001_indexed


title: genomic DNA from peripheral blood leukocytes 1777


title: genomic DNA from peripheral blood leukocytes 1779


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E6_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E5_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E4_AD008_indexed


title: genomic DNA from peripheral blood leukocytes 1755


title: genomic DNA from peripheral blood leukocytes 1774


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E6_AD007_indexed


title: genomic DNA from peripheral blood leukocytes 1754


title: Parental cells

type: RNA

city: New Taipei City

first: Shaochen

last: Lee

address: 510 Zhongzheng Rd., Xinzhuang Dist.

department: School of Medicine

country: Taiwan

institute: FuJen Catholic University

hyb_protocol: Standard Illumina hybridization protocol.

scan_protocol: Standard Illumina scanning protocol.

data_processing: The data were normalised using quantile normalisation with IlluminaGUI in R.

label: Biotin

source_name: culture cells

label_protocol: Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.

growth_protocol: The cells were maintained in DMEM medium supplemented with 10% (v/v) FBS, 100 units/ml penicillin, and 100 ug/ml streptomycin under 5% CO2 with 100% humidity at 37 degree.

extract_protocol: RNA was extracted with Trizol reagent.

treatment_protocol: The drug-resistant cells were derived from parental A2058 cells by continuing selection using 100 uM carmustine for 6 months.

tag: cell line

tag: phenotype

value: Parental


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E5_AD002_indexed

tag: age


title: genomic DNA from peripheral blood leukocytes 1751

tag: tissue


title: genomic DNA from peripheral blood leukocytes 1749


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E3_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E3_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E4_AD006_indexed


title: genomic DNA from peripheral blood leukocytes 1742


title: Wild type_P4

tag: cell type


title: genomic DNA from peripheral blood leukocytes 1741

tag: gender


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E3_AD004_indexed


title: genomic DNA from peripheral blood leukocytes 1736

tag: age(yrs)


title: genomic DNA from peripheral blood leukocytes 1747

tag: systolic blood pressure (mmhg)


title: Drug-resistant cells

value: Carmustine-resistant


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E3_AD010_indexed


title: genomic DNA from peripheral blood leukocytes 1731

tag: diastolic blood pressure (mmhg)


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E2_AD002_indexed


title: genomic DNA from peripheral blood leukocytes 1735


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E3_AD002_indexed


title: genomic DNA from peripheral blood leukocytes 1726


title: genomic DNA from peripheral blood leukocytes 1724


title: genomic DNA from peripheral blood leukocytes 1721


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E2_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E2_AD010_indexed


title: genomic DNA from peripheral blood leukocytes 1717


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E2_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E2_AD001_indexed


title: genomic DNA from peripheral blood leukocytes 1716


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E3_AD001_indexed


title: genomic DNA from peripheral blood leukocytes 1712


title: genomic DNA from peripheral blood leukocytes 1714


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E2_AD008_indexed


title: genomic DNA from peripheral blood leukocytes 1699


title: genomic DNA from peripheral blood leukocytes 1690


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E1_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E1_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E1_AD012_indexed


title: genomic DNA from peripheral blood leukocytes 1688


title: genomic DNA from peripheral blood leukocytes 1689


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E1_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E11_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E1_AD007_indexed


title: genomic DNA from peripheral blood leukocytes 1680


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E1_AD006_indexed


title: genomic DNA from peripheral blood leukocytes 1681


title: genomic DNA from peripheral blood leukocytes 1684


title: genomic DNA from peripheral blood leukocytes 1679


title: genomic DNA from peripheral blood leukocytes 1675


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E12_AD001_indexed


title: genomic DNA from peripheral blood leukocytes 1664


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E11_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E12_AD010_indexed


title: genomic DNA from peripheral blood leukocytes 1657


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E12_AD008_indexed


title: genomic DNA from peripheral blood leukocytes 1653


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E12_AD007_indexed


title: genomic DNA from peripheral blood leukocytes 1645


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E11_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E12_AD006_indexed


title: genomic DNA from peripheral blood leukocytes 1648


title: genomic DNA from peripheral blood leukocytes 1644


title: genomic DNA from peripheral blood leukocytes 1642


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E11_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E12_AD004_indexed


title: genomic DNA from peripheral blood leukocytes 1640


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E12_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E1_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E1_AD001_indexed


title: genomic DNA from peripheral blood leukocytes 1635


title: genomic DNA from peripheral blood leukocytes 1633


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E11_AD004_indexed


title: genomic DNA from peripheral blood leukocytes 1621


title: genomic DNA from peripheral blood leukocytes 1620


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E11_AD001_indexed


title: genomic DNA from peripheral blood leukocytes 1612


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E10_AD012_indexed


title: genomic DNA from peripheral blood leukocytes 1601


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E10_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E10_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D9_AD012_indexed


title: genomic DNA from peripheral blood leukocytes 1595


title: genomic DNA from peripheral blood leukocytes 1593


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D9_AD010_indexed


title: genomic DNA from peripheral blood leukocytes 1585


title: genomic DNA from peripheral blood leukocytes 1641


title: genomic DNA from peripheral blood leukocytes 1581


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E10_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E10_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_F10_AD002_indexed


title: genomic DNA from peripheral blood leukocytes 1580


title: genomic DNA from peripheral blood leukocytes 1577


title: genomic DNA from peripheral blood leukocytes 1576


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E11_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D9_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D9_AD004_indexed


title: genomic DNA from peripheral blood leukocytes 1637


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D9_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D8_AD010_indexed


title: genomic DNA from peripheral blood leukocytes 1575


title: genomic DNA from peripheral blood leukocytes 1565


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D8_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D9_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D8_AD004_indexed


title: genomic DNA from peripheral blood leukocytes 1574


title: genomic DNA from peripheral blood leukocytes 1558


title: genomic DNA from peripheral blood leukocytes 1553


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D8_AD001_indexed


title: genomic DNA from peripheral blood leukocytes 1556


title: genomic DNA from peripheral blood leukocytes 1549


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D8_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E2_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D7_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D8_AD007_indexed


title: genomic DNA from peripheral blood leukocytes 1544


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D7_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D9_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D7_AD004_indexed


title: genomic DNA from peripheral blood leukocytes 1540


title: genomic DNA from peripheral blood leukocytes 1532


title: genomic DNA from peripheral blood leukocytes 1543


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D7_AD001_indexed


title: genomic DNA from peripheral blood leukocytes 1526


title: genomic DNA from peripheral blood leukocytes 1564


title: genomic DNA from peripheral blood leukocytes 1521


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D7_AD012_indexed


title: genomic DNA from peripheral blood leukocytes 1562


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D7_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D8_AD012_indexed


title: genomic DNA from peripheral blood leukocytes 1516


title: genomic DNA from peripheral blood leukocytes 1518


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D6_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D6_AD006_indexed


title: genomic DNA from peripheral blood leukocytes 1519


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D6_AD010_indexed


title: genomic DNA from peripheral blood leukocytes 1504


title: genomic DNA from peripheral blood leukocytes 1512


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D5_AD006_indexed


title: genomic DNA from peripheral blood leukocytes 1498


title: genomic DNA from peripheral blood leukocytes 1495


title: genomic DNA from peripheral blood leukocytes 1488


title: genomic DNA from peripheral blood leukocytes 1487


title: genomic DNA from peripheral blood leukocytes 1481


title: genomic DNA from peripheral blood leukocytes 1478


title: genomic DNA from peripheral blood leukocytes 1477


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D5_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D6_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D5_AD007_indexed


title: genomic DNA from peripheral blood leukocytes 1475


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D5_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D4_AD012_indexed


title: genomic DNA from peripheral blood leukocytes 1476


title: genomic DNA from peripheral blood leukocytes 1471


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D6_AD004_indexed


title: genomic DNA from peripheral blood leukocytes 1470


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_E10_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D4_AD008_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D5_AD001_indexed


title: genomic DNA from peripheral blood leukocytes 1469


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D5_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D4_AD006_indexed


title: genomic DNA from peripheral blood leukocytes 1466


title: genomic DNA from peripheral blood leukocytes 1459


title: genomic DNA from peripheral blood leukocytes 1456


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D4_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D6_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D4_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D5_AD004_indexed


title: genomic DNA from peripheral blood leukocytes 1464


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D3_AD002_indexed


title: genomic DNA from peripheral blood leukocytes 1454


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D4_AD001_indexed


title: genomic DNA from peripheral blood leukocytes 1452


title: genomic DNA from peripheral blood leukocytes 1453


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D3_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D2_AD001_indexed


title: genomic DNA from peripheral blood leukocytes 1450


title: genomic DNA from peripheral blood leukocytes 1446


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D2_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D2_AD002_indexed


title: genomic DNA from peripheral blood leukocytes 1436


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D2_AD012_indexed


title: genomic DNA from peripheral blood leukocytes 1435


title: genomic DNA from peripheral blood leukocytes 1429


title: genomic DNA from peripheral blood leukocytes 1424


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D2_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D4_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D3_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D12_AD012_indexed


title: genomic DNA from peripheral blood leukocytes 1455


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D1_AD007_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D1_AD006_indexed


title: genomic DNA from peripheral blood leukocytes 1410


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D4_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D11_AD006_indexed


title: genomic DNA from peripheral blood leukocytes 1408


title: genomic DNA from peripheral blood leukocytes 1407


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D12_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D12_AD004_indexed


title: genomic DNA from peripheral blood leukocytes 1406


title: genomic DNA from peripheral blood leukocytes 1438


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D3_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D12_AD006_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D3_AD010_indexed


title: genomic DNA from peripheral blood leukocytes 1405


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D12_AD008_indexed


title: genomic DNA from peripheral blood leukocytes 1420


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D1_AD012_indexed


title: genomic DNA from peripheral blood leukocytes 1392


title: genomic DNA from peripheral blood leukocytes 1417


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D1_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D11_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D11_AD007_indexed


title: genomic DNA from peripheral blood leukocytes 1412


title: genomic DNA from peripheral blood leukocytes 1389


title: genomic DNA from peripheral blood leukocytes 1385


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D11_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D11_AD001_indexed


title: genomic DNA from peripheral blood leukocytes 1368


title: genomic DNA from peripheral blood leukocytes 1369


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D1_AD001_indexed


title: genomic DNA from peripheral blood leukocytes 1365


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D10_AD010_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D1_AD002_indexed


title: genomic DNA from peripheral blood leukocytes 1364


title: genomic DNA from peripheral blood leukocytes 1354


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D10_AD006_indexed


title: genomic DNA from peripheral blood leukocytes 1403


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D10_AD012_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D11_AD008_indexed


title: genomic DNA from peripheral blood leukocytes 1398


title: genomic DNA from peripheral blood leukocytes 1351


title: genomic DNA from peripheral blood leukocytes 1386


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D11_AD002_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D10_AD008_indexed


title: genomic DNA from peripheral blood leukocytes 1344


title: genomic DNA from peripheral blood leukocytes 1349


title: genomic DNA from peripheral blood leukocytes 1336


title: genomic DNA from peripheral blood leukocytes 1346


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D10_AD001_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D10_AD004_indexed


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_D10_AD007_indexed


title: genomic DNA from peripheral blood leukocytes 1328


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_C9_AD004_indexed


title: genomic DNA from peripheral blood leukocytes 1330


title: 180626_CEMBA_mm_P56_P63_5B_CEMBA180529_5B_3_CEMBA180529_5B_4_C9_AD008_indexed


title: genomic DNA from peripheral blood leukocytes 1320


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title: genomic DNA from peripheral blood leukocytes 1297


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title: genomic DNA from peripheral blood leukocytes 1289


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title: genomic DNA from peripheral blood leukocytes 1149


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title: genomic DNA from peripheral blood leukocytes 1144


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title: genomic DNA from peripheral blood leukocytes 1060


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title: genomic DNA from peripheral blood leukocytes 1061


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title: genomic DNA from peripheral blood leukocytes 1055


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title: genomic DNA from peripheral blood leukocytes 1072


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title: genomic DNA from peripheral blood leukocytes 1048


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title: genomic DNA from peripheral blood leukocytes 1042


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title: genomic DNA from peripheral blood leukocytes 1035


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title: genomic DNA from peripheral blood leukocytes 1034


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title: genomic DNA from peripheral blood leukocytes 1023


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title: genomic DNA from peripheral blood leukocytes 1013


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