title: CM27_6 week neuron_Bonobo

description:
processed data file:
Linker_Marchetto_Gage_count.txt
Linker_Marchetto_Gage_tpm.txt
CM27_R2

source_name: 6 week neuron


title: CM25_2 week neuron_Bonobo

status: Public on Sep 20 2020

type: SRA

city: La Jolla

first: Fred

middle: H

last: Gage

state: CA

address: 10010 N Torrey Pines Rd

country: USA

institute: The Salk Institute for Biological Studies

description:
processed data file:
Linker_Marchetto_Gage_count.txt
Linker_Marchetto_Gage_tpm.txt
CM25_R2

library_source: transcriptomic

data_processing:
RNA and ChIP-Seq: trim raw FASTQ files, SolexaQA++
RNA: alignment to hg19, STAR
RNA: alignment to panTro4, STAR
RNA: alignment to gorgor3, STAR
RNA: alignment to rhemac2, STAR
RNA: join all alignments for each sample and sort by read id
RNA: select reads mapped uniquely to each genome (3mm same species, 5 mm different species)
RNA: Count reads in genes corresponding to the hg19 transcriptome reference, HT-Seq
RNA: Transform counts to TPM
ChIP-Seq: Alignment to hg19, bowtie
ChIP-Seq: Peak Calling, HOMER
Genome_build: hg19 (grch37), pantro4 (CSAC 2.1.4), gorgor3 (gorGor3.1), and rhemac2(MGSC Merged 1.0)
Supplementary_files_format_and_content: tab-delimited text file

molecule: polyA RNA

organism: Pan paniscus

source_name: 2 week neuron

growth_protocol: Established iPSC colonies were kept in feeder-free conditions indefinitely and passed using mechanical dissociation. To obtain NPCs from iPSCs, embryoid bodies (EBs) were formed by mechanical dissociation of iPSC clusters and plated into low-adherence dishes in DMEM/F12 plus N2 and B27 (Invitrogen) medium in the presence of Noggin (R&D) for forebrain induction for approximately 7 days. Then, floating EBs were plated onto poly-ornithine/laminin (Sigma)-coated dishes in DMEM/F12 plus N2 and B27 (Invitrogen) with the addition of Noggin. Rosettes were collected after 7 days. Rosettes were then dissociated with accutase (Chemicon) and plated again onto coated dishes in DMEM/F12 plus N2 and B27 and 10 ng/ml of FGF2 (R&D). Homogeneous populations of NPCs were obtained after 1-2 passages with accutase under the same conditions. To obtain neurons, NPCs were cultured in DMEM/F12 plus N2 and B27 with the addition of laminin (1 µg/ml), BDNF (20 ng/ml), GDNF (20 ng/ml) and cyclic AMP (500 µg/ml) for up to 8 weeks.

extract_protocol:
Total cellular RNA was extracted from ~5x106 cells using the RNeasy Protect Mini kit or RNeasy Plus kit (Qiagen, Valencia, CA), according to the manufacturer's instructions.
PolyA+ RNA was fragmented and prepared into sequencing libraries using the Illumina TruSeq RNA sample preparation kit.

treatment_protocol: No additional treatment was performed

tag: individual

tag: Sex

value: M

tag: sh


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H8_ad007

first: Joseph

middle: R

last: Ecker

address: 10010 North Torrey Pines Road

department: Genomic Analysis Laboratory

institute: HHMI-Salk-Institute

library_source: genomic

data_processing:
Library strategy: snmC-seq2
Reads trimed with Cutadapt for adapters and low quality bases (Phred score >= 20)
The resulting files are mapped to in-silico bisulfite converted mm10 reference genome using Bismark.
The raw BAM file will be filtered using samtools to filter reads by MAPQ > 10 and use Picard to remove PCR duplicates
Tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls will be generated with in-house developing package using the filtered BAM files
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls. Columns are: 1. Chromosome, 2. Position, 3. Strand, 4. Cytosine Context, 5. methylated base call, 6. total mapped base call, 7. not used, place holder column

molecule: genomic DNA

organism: Mus musculus

source_name: C57BL/6J Male P56 Mouse Brain

growth_protocol: All mice are C57BL/6J Male, brain dissected in P56

extract_protocol:
the brain of P56 male C57BL/6J mouse will be removed and cut into 600 microns thick coronal sections using a tissue matrix. Then each region will be microdissected from the coronal tissue sections based on identified landmarks and brain atlas coordinates, as defined in Allen brain atlas CCF3 (Avaliable at: http://atlas.brain-map.org). For each dissection region, the tissue from several littermate mice will be combined together into to separate replicate groups. The number of animals in a replicate depends on the size of the tissue. Nuclei preparation will be stained with the fluorescently labeled anti-NeuN body and nucleic acid stain Hoechst 33342.
Library prepared following protocol discribed in Luo, Chongyuan, Angeline Rivkin, Jingtian Zhou, Justin P. Sandoval, Laurie Kurihara, Jacinta Lucero, Rosa Castanon, et al. 2018. “Robust Single-Cell DNA Methylome Profiling with snmC-seq2.” Nature Communications 9 (1): 3824.

tag: brain region

value: DG

value: male

tag: age

tag: strain


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H8_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H9_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H9_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H8_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H8_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H8_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H9_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H9_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H9_ad010


title: CM26_4 week neuron_Bonobo

description:
processed data file:
Linker_Marchetto_Gage_count.txt
Linker_Marchetto_Gage_tpm.txt
CM26_R2

source_name: 4 week neuron


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H7_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H7_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H7_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H8_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H8_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H7_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H9_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H7_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H7_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H6_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H9_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H9_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H6_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H6_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H7_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H6_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H6_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H7_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H6_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H5_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H5_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H5_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H4_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H4_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H5_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H4_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H6_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H5_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H5_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H4_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H6_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H4_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H5_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H3_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H3_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H3_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H3_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H3_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H2_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H3_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H2_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H2_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H2_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H2_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H12_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H12_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H3_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H11_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H12_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H12_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H11_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H11_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H11_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H4_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H12_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H4_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H11_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H10_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H10_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H10_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H11_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H11_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H10_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H10_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H10_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H1_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H1_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H1_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H12_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H1_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H1_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H1_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G9_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G9_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G9_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H10_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G9_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H1_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G9_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G8_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G9_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G8_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G7_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G9_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G9_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G8_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G8_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G8_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H1_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G7_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G7_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G8_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G7_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G7_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G7_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G7_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G6_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G6_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G6_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G7_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G6_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G6_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G8_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G6_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G8_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G6_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G5_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G5_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G5_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G5_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G5_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G4_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G4_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G4_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G4_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G4_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G5_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G4_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G4_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G4_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G3_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G3_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G3_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G3_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G3_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G2_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G3_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G2_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G2_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G5_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G2_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G2_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G12_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G2_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G12_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G2_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G11_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G12_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G11_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G12_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G11_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G3_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G11_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G12_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G11_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G2_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G10_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G10_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G10_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G10_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G10_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G10_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G12_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G10_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G11_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G1_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G1_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G11_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G1_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G1_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G1_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G10_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G1_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G1_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F9_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F9_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G1_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F9_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F9_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F8_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F8_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F8_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F8_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F8_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F9_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F8_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F7_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F9_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F7_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F7_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F9_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F8_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_G12_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F7_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F6_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F7_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F6_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F7_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F6_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F6_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F6_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F6_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F6_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F6_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F5_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F8_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F5_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F7_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F5_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F7_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F5_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F5_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F5_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F5_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F4_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F4_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F4_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F4_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F4_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F4_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F3_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F4_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_H10_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F3_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F3_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F3_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F3_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F3_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F2_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F3_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F2_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F2_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F2_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F2_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F2_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F12_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F12_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F12_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F2_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F12_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F12_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F11_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F11_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F11_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F11_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F11_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F11_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F11_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F10_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F11_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F10_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F10_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F10_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F10_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F1_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F1_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F10_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F1_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F12_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F1_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F10_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F1_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F1_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E9_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F1_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E9_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E9_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E9_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F12_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E9_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F10_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E9_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E9_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E9_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E8_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E8_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E8_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E8_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E8_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_F1_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E8_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E7_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E7_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E7_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E8_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E7_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E6_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E6_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E6_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E6_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E7_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E7_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E6_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E6_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E6_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E5_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E5_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E5_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E6_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E5_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E5_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E5_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E8_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E5_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E4_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E4_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E4_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E4_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E4_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E4_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E4_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E3_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E3_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E3_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E3_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E3_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E3_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E2_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E2_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E2_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E5_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E2_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E2_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E2_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E12_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E12_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E12_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E12_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E11_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E11_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E3_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E12_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E12_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E3_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E2_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E11_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E11_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E11_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E11_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E11_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E10_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E2_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E11_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E10_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E10_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E10_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E12_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E10_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E10_ad001


title: patient rep3

city: guangzhou

first: yuhua

last: xiao

state: guangdong province

address: jinsui load

department: zhongshan Ophthalmic  center

country: China

institute: Sun Yat-sen University

data_processing:
Cellranger v3.1 was used for demultiplexing, aligment and quantification.
Genome_build: GRCh38
Supplementary_files_format_and_content: tab-delimited text files include feature name or barcode of each sample, and mtx files containing expression value of each gene in each cell of each sample.

organism: Homo sapiens

source_name: Monocytes

extract_protocol:
Fresh heparinized venous blood samples from healthy donors and VKH patients were processed within 2 hours of collection. PBMCs were isolated from fresh blood using Ficoll density gradient centrifugation at 500g for 30min at room temperature (25oC). Single-cell suspensions were processed by pan monocyte isolation kit according to the manufacturers’ instructions (Thermo Fisher Scientific, catalog no. 8804-6837-74) in order to enrich monocytes as many as possible for single-cell RNA sequencing.
Chromiun Single Cell 3' Reagent v2 or v3

tag: tissue

value: PBMC

tag: disease state

value: Vogt-Koyanagi-Harada


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E10_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E12_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E1_ad012


title: patient rep2


title: normal rep3

value: healthy


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E1_ad001


title: patient rep1


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E1_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E1_ad010


title: normal rep2


title: normal rep1


title: Dropseq-S7.ROCK

city: Boston

first: Chen

last: Weng

state: OH

address: 415 Main St, Cambridge

department: Genetics

institute: Broad Institute and Whitehead Institute

data_processing:
We performed raw reads processing following the instructions described in the original Drop-Seq publication (Macosko et al., 2015). The sequenced Drop-Seq libraries yield 50-base paired-end reads (PE50). However, since only the first 20bp of read 1 is informative (base 1-12 cell barcode, base 13-20 UMI), we trimmed base 21-50 of read 1 before further analysis. We first remove all data with the quality score of read 1 (base 1-20) lower than 10. Read 2 was trimmed at 3’ end to remove ployA tails of at least 6 bases, and trimmed at 5’ if template switching oligo (TSO) adapter sequence appears. Clean reads were then aligned to hg18 or mm9 using STAR with default settings. We only keep uniquely mapped reads on gene exons. We next filtered out PCR duplicates with the same coordinates, cell barcode, and UMI. We then grouped the reads by cell barcode, and generated the digital UMI-count matrix after counting transcripts for every gene with different cell barcode.
Genome_build: hg18
Supplementary_files_format_and_content: DGE(Digital gene expression) table was generated.   Row stands for genes; Column stands for single cells.  Number is the transcripts number(UMI) of any given gene in any given cell

source_name: Stage7 with ROCKII inhibitor

growth_protocol: Differentiation was performed following a previous publication (A Rezania et al., 2014). Briefly, H1 cells were dissociated with gentle cell dissociation reagent into singlets. Cells were resuspended in mTeSR1 medium with Rock II inhibitor (Y-27632, abcam #ab120129) at 10 uM concentration, and seeded in Matrigel coated plate. On the consecutive day, differentiation started with pancreatic differentiation kit (Stemcell Technology #5120) from stage 1 to stage 4 following the manufacturer’s manual.

extract_protocol: Dropseq (single cell RNA-seq); http://mccarrolllab.org/dropseq/

tag: cell type source

value: Human embryonic stem cell (H1)

tag: differentiation stage


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E1_ad004


title: Dropseq-S7


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E1_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_E1_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D9_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D9_ad007


title: Dropseq-S6.ROCK.B

source_name: Stage6 with ROCKII inhibitor, replicate B


title: Dropseq-S5.ROCK

source_name: Stage5 with ROCKII inhibitor


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D9_ad010


title: Dropseq-S6.ROCK.A

source_name: Stage6 with ROCKII inhibitor, replicate A


title: Dropseq-S5.B

source_name: Stage5, replicate B


title: Dropseq-S6


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D9_ad004


title: Dropseq-S5.A

source_name: Stage5, replicate A


title: Dropseq-S3.A

source_name: Stage3, replicate A


title: Dropseq-S2D3.A

source_name: Stage2 day3, replicate A

value: Stage2 day3


title: Dropseq-S3.B

source_name: Stage3, replicate B


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D9_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D9_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D8_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D8_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D8_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D8_ad010


title: Dropseq-S2D2

source_name: Stage2 day2

value: Stage2 day2


title: Dropseq-S4


title: Dropseq-S2D1

source_name: Stage2 day1

value: Stage2 day1


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D9_ad001


title: Dropseq-S1D2

source_name: Stage1 day2

value: Stage1 day2


title: Dropseq-S1D1

source_name: Stage1 day1

value: Stage1 day1


title: Dropseq-S2D3.B

source_name: Stage2 day3, replicate B


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D8_ad002

source_name: C57BL/6J Male P56 Mouse Brain


title: Dropseq-S0


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D8_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D9_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D7_ad001


title: wt33_c1_NPC_Human

description:
processed data file:
Linker_Marchetto_Gage_count.txt
Linker_Marchetto_Gage_tpm.txt
wt33_c1

source_name: NPC

value: F


title: wt33_c7_NPC_Human

description:
processed data file:
Linker_Marchetto_Gage_count.txt
Linker_Marchetto_Gage_tpm.txt
wt33_c7


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D8_ad008


title: wt126_c8_NPC_Human

description:
processed data file:
Linker_Marchetto_Gage_count.txt
Linker_Marchetto_Gage_tpm.txt
wt126_c8


title: ATCC_c1_NPC_Human

description:
processed data file:
Linker_Marchetto_Gage_count.txt
Linker_Marchetto_Gage_tpm.txt
ATCC_c1

value: ATCC


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D7_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D8_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D7_ad004


title: wt126_c5_NPC_Human

description:
processed data file:
Linker_Marchetto_Gage_count.txt
Linker_Marchetto_Gage_tpm.txt
wt126_c5


title: ATCC_c2_NPC_Human

description:
processed data file:
Linker_Marchetto_Gage_count.txt
Linker_Marchetto_Gage_tpm.txt
ATCC_c2


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D7_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D6_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D7_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D5_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D6_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D6_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D5_ad010


title: Dropseq-hESC-H1

source_name: Human embryonic stem cell(H1)


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D7_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D7_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D6_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D5_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D5_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D7_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D5_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D5_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D6_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D5_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D4_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D4_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D4_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D6_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D4_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D4_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D4_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D4_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D4_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D3_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D5_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D3_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D3_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D3_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D3_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D3_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D3_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D3_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D2_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D2_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D2_ad001


title: D5MGTNTB

city: Chapel Hill

first: Li

last: Wang

state: NC

address: 111 Mason Farm Rd, Chapel Hill, NC 27599

department: UNC

institute: University of North Carolina at Chapel Hill

data_processing:
Qualities of de-barcoded raw sequence reads were checked by fastqc.
For RNAseq, the quality of sequencing results was first checked by FASTQC. Reads are in high-quality and no trimming was required. The processed reads were then mapped to mouse genome of mm10 by BBMap with default parameters. The generated BAM files were sorted and indexed using SAMtools. Reads were counted using featureCounts.
ATACseq reads with exact matches were used in demultiplexing with bcl2fastq (2.18.0.12). Reads were aligned to mouse reference genome (MM10_UCSC) using Bowtie2 with default parameters. Filtering  of properly paired reads with high mapping quality (MAPQ score> 10) was performed using SAMTools. PCR duplicate reads were removed using Picard tools MarkDuplicates module (http://broadinstitute.github.io/picard/).  ATACseq peak regions of merged biological duplicate samples were called using MACS2 with parameters -f BAMPE -g mm --nomodel -q 0.01. Peak raw counts were counted using bamCoverage of deepTools v. 3.1. The signal distribution around each transcription start site (TSS) (from 1kb upstream to 1kp downstream) were computed in computeMatrix and heatmaps were plotted in plotHeatmap of deeptools. Differential binding sites were identified using R package Diffbind, and those of significant difference (FDR < 0.05) between indicated samples were functionally annotated with nearby genes in GREAT v 3.0.0 with Basal plus extension mode.
Genome_build: UCSC_Mm10
Supplementary_files_format_and_content: tab-delimited text files containing CPM values for each sample

molecule: total RNA

source_name: cardiac

growth_protocol: Cell were maintained in iCM medium (10% FBS in DMEM/M199 (4:1)) .

extract_protocol:
Total RNAs of cells were extracted using Trizol. Around 50,000 cells were collected from each sample and subjected to chromatin extraction, transposition, PCR amplification and purification according to standard ATACseq protocol.
Illumina libraries were prepared using TrueSeq Standard mRNA Sample Preparation Kit.

treatment_protocol: Freshly isolated cardiac fiborblasts were seeded into one well of a 6-well plate. On the following day, pMXs-LacZ or pMXs-MGT retrovirus were added to the cells. Twenty-four hours later, lentiviral shNT or shBecn1 were added to LacZ ot MGT transduced cells respectively. After another three and five days, cells were collected for either RNAseq or ATACseq.

value: heart

tag: genotype

value: wild type


title: D5MGTBnA


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D2_ad012


title: D5MGTBnB


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D2_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D2_ad006


title: D5MGTNTA


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D2_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D2_ad004


title: D3MGTBnB


title: D5LacZBnA


title: D5LacZNTA


title: D3MGTNTB


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D12_ad010


title: D3MGTBnA


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D12_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D12_ad007


title: D3MGTNTA


title: D3LacZBnB


title: D3LacZBnA


title: D3LacZNTB


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D12_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D12_ad002


title: D5LacZNTB


title: D5LacZBnB


title: D3LacZNTA


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D11_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D11_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D11_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D11_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D11_ad004


title: nicdHomo459_P8_

city: Stockholm

first: Urban

last: Lendahl

state: State...

address: SE-171 77 Stockholm

department: CMB

country: Sweden

institute: Karolinska Insitute

description:
n1icd-egfp experiment group
(nicd homo)
SS2_16_459_counts.tab

data_processing:
Demultiplexed fastq files with deindexer using the nextera index adapters and the 384 well layout
Individual fastq files were then mapped to the relevant genome assembly using the STAR aligner (Dobin et al. Bioinformatics 2013) using 2-pass alignment to have improved performance of de novo splice junction reads, filtered for only uniquely mapping reads that are saved in the BAM file.
Expression values computed (2009 PLoS Comp Biol) using uniquely aligned reads and corrected for the uniquely alignable positions using MULTo (Storvall et al. 2013 PLoS ONE).
Genome_build: mm10
Supplementary_files_format_and_content: The count matrix shows the individual counts aligning to each gene per cell.

source_name: mammary gland

extract_protocol:
Fresh inguinal mammary glands were removed, dissociate using Tumour Dissociation Kit (Miltenyi Biotec), GFP- and tdTomato-positive cells were sorted as single cells in 384-well plates containing lysis cocktail. Smart-Seq2 protocol was used for for the construction of sequencing libraries.
Single cell RNA libraries were prepared for sequencing using Smart-Seq2 protocol

value: mammary gland

value: WAP-CRE; R26-N1ICD-EGFP


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D11_ad001

value: DG


title: nicdHomo459_P9_


title: nicdHomo459_P7_


title: nicdHomo459_P3_


title: nicdHomo459_P5_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D10_ad012

value: male


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D12_ad004


title: nicdHomo459_P24


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D12_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D10_ad008


title: nicdHomo459_P23


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D10_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D10_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D10_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D10_ad002


title: nicdHomo459_P19


title: nicdHomo459_P1_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C9_ad012


title: nicdHomo459_P22


title: nicdHomo459_P21


title: nicdHomo459_P20


title: nicdHomo459_P6_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D11_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D10_ad001


title: nicdHomo459_P4_


title: nicdHomo459_P18


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C9_ad007


title: nicdHomo459_P2_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C9_ad010


title: nicdHomo459_P16


title: nicdHomo459_P15


title: nicdHomo459_P17


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C9_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C9_ad006


title: nicdHomo459_P14


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C9_ad002


title: nicdHomo459_P13


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C8_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_D10_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C9_ad008


title: nicdHomo459_P11


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C8_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C8_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C8_ad002


title: nicdHomo459_O9_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C8_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C7_ad012


title: nicdHomo459_O8_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C8_ad006


title: nicdHomo459_O5_


title: nicdHomo459_O7_


title: nicdHomo459_O6_


title: nicdHomo459_O24


title: nicdHomo459_O23


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C8_ad004


title: nicdHomo459_O2_


title: nicdHomo459_O3_


title: nicdHomo459_O4_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C7_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C7_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C7_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C7_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C7_ad004


title: nicdHomo459_O22


title: nicdHomo459_O20


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C7_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C7_ad002


title: nicdHomo459_P12


title: nicdHomo459_O21


title: nicdHomo459_P10


title: nicdHomo459_O1_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C6_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C6_ad001


title: nicdHomo459_O18


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C6_ad007


title: nicdHomo459_O19


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C6_ad010


title: nicdHomo459_O17


title: nicdHomo459_O16


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C6_ad006


title: nicdHomo459_O15


title: nicdHomo459_O14


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C6_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C6_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C6_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C5_ad012


title: nicdHomo459_O10


title: nicdHomo459_O13


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C5_ad001


title: nicdHomo459_O11


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C5_ad007


title: nicdHomo459_N9_


title: nicdHomo459_N8_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C5_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C5_ad010


title: nicdHomo459_N7_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C5_ad002


title: nicdHomo459_N6_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C5_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C4_ad007


title: nicdHomo459_N4_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C4_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C4_ad004


title: nicdHomo459_N3_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C4_ad010


title: nicdHomo459_O12


title: nicdHomo459_N24


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C4_ad002


title: nicdHomo459_N2_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C4_ad008


title: nicdHomo459_N1_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C3_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C4_ad001


title: nicdHomo459_N20


title: nicdHomo459_N21


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C5_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C3_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C3_ad001


title: nicdHomo459_N19


title: nicdHomo459_N18


title: nicdHomo459_N5_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C3_ad010


title: nicdHomo459_N17


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C3_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C3_ad004


title: nicdHomo459_N16


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C3_ad002


title: nicdHomo459_N15


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C2_ad012


title: nicdHomo459_N14


title: nicdHomo459_N12


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C2_ad007


title: nicdHomo459_N23


title: nicdHomo459_N13


title: nicdHomo459_N11


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C2_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C2_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C2_ad010


title: nicdHomo459_N10


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C2_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C2_ad002


title: nicdHomo459_M9_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C12_ad012


title: nicdHomo459_M7_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C12_ad010


title: nicdHomo459_M6_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C12_ad008


title: nicdHomo459_M4_


title: nicdHomo459_M5_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C12_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C12_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C12_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C12_ad001


title: nicdHomo459_M2_


title: nicdHomo459_M24


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C11_ad012


title: nicdHomo459_M23


title: nicdHomo459_N22


title: nicdHomo459_M22


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C11_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C11_ad010


title: nicdHomo459_M21


title: nicdHomo459_M8_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C11_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C11_ad006


title: nicdHomo459_M19


title: nicdHomo459_M18


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C11_ad002


title: nicdHomo459_M3_


title: nicdHomo459_M17


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C11_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C10_ad010


title: nicdHomo459_M15


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C10_ad008


title: nicdHomo459_M14


title: nicdHomo459_M13


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C10_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C10_ad007


title: nicdHomo459_M12


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C10_ad004


title: nicdHomo459_M11


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C10_ad006


title: nicdHomo459_M1_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C10_ad002


title: nicdHomo459_L9_


title: nicdHomo459_M10


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C1_ad012


title: nicdHomo459_L8_


title: nicdHomo459_L7_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C11_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C10_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C1_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C1_ad001


title: nicdHomo459_M20


title: nicdHomo459_M16


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C1_ad010


title: nicdHomo459_L3_


title: nicdHomo459_L4_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C1_ad006


title: nicdHomo459_L5_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C1_ad002


title: nicdHomo459_L2_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C1_ad008


title: nicdHomo459_L24


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B9_ad012


title: nicdHomo459_L23


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B9_ad001


title: nicdHomo459_L22


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B9_ad007


title: nicdHomo459_L21


title: nicdHomo459_L20


title: nicdHomo459_L19


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B9_ad006


title: nicdHomo459_L6_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B9_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B9_ad004


title: nicdHomo459_L1_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_C1_ad004


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B9_ad002


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B9_ad008


title: nicdHomo459_L18


title: nicdHomo459_L16


title: nicdHomo459_L17


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B8_ad001


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B8_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B8_ad006


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B8_ad002


title: nicdHomo459_L12


title: nicdHomo459_L11


title: nicdHomo459_L10


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B7_ad012


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B8_ad010


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B8_ad008


title: nicdHomo459_L14


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B7_ad001


title: nicdHomo459_K8_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B7_ad002


title: nicdHomo459_K5_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B7_ad004


title: nicdHomo459_K4_


title: nicdHomo459_K7_


title: nicdHomo459_K6_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B7_ad006


title: nicdHomo459_K2_


title: nicdHomo459_L13


title: nicdHomo459_L15


title: nicdHomo459_K24


title: nicdHomo459_K3_


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B7_ad008


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B6_ad012


title: nicdHomo459_K23


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B6_ad007


title: CEMBA190711_8J_3_CEMBA190711_8J_4_B6_ad010


title: nicdHomo459_K22


title: nicdHomo459_K21


title: nicdHomo459_K20


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title: CEMBA190711_8J_1_CEMBA190711_8J_2_H4_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H4_ad012


title: nicdHomo459_D10


title: nicdHomo459_D18


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H4_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H5_ad007


title: nicdHomo459_C8_


title: nicdHomo459_C9_


title: nicdHomo459_C7_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H4_ad006


title: nicdHomo459_C6_


title: nicdHomo459_C5_


title: nicdHomo459_C4_


title: nicdHomo459_C3_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H3_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H3_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H3_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H3_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H2_ad002


title: nicdHomo459_C2_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H2_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H4_ad004


title: nicdHomo459_C23


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H2_ad008


title: nicdHomo459_D12


title: nicdHomo459_C22


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H2_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H2_ad004


title: nicdHomo459_C20


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H2_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H4_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H3_ad012


title: nicdHomo459_C1_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H2_ad012


title: nicdHomo459_C18


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H12_ad012


title: nicdHomo459_C19


title: nicdHomo459_C17


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H12_ad008


title: nicdHomo459_C14


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H12_ad001


title: nicdHomo459_C16


title: nicdHomo459_C13


title: nicdHomo459_C15


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H11_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H11_ad010


title: nicdHomo459_C11


title: nicdHomo459_C10


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H11_ad008


title: nicdHomo459_C21


title: nicdHomo459_B9_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H11_ad002


title: nicdHomo459_B8_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H11_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H12_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H10_ad010


title: nicdHomo459_B7_


title: nicdHomo459_B6_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H10_ad012


title: nicdHomo459_B4_


title: nicdHomo459_C24


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H12_ad004


title: nicdHomo459_B5_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H10_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H10_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H12_ad006


title: nicdHomo459_B3_


title: nicdHomo459_C12


title: nicdHomo459_B2_


title: nicdHomo459_B23


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H10_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H1_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H1_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H10_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H1_ad010


title: nicdHomo459_B24


title: nicdHomo459_B21


title: nicdHomo459_B20


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H1_ad004


title: nicdHomo459_B1_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H12_ad007


title: nicdHomo459_B18


title: nicdHomo459_B19


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H1_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H1_ad002


title: nicdHomo459_B17


title: nicdHomo459_B16


title: nicdHomo459_B15


title: nicdHomo459_B14


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G9_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G9_ad010


title: nicdHomo459_B13


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G9_ad006


title: nicdHomo459_B12


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G8_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G8_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G8_ad007


title: nicdHomo459_B22


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G8_ad010


title: nicdHomo459_B11


title: CEMBA190711_8J_1_CEMBA190711_8J_2_H1_ad006


title: nicdHomo459_B10


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G9_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G8_ad006


title: nicdHomo459_A9_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G8_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G9_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G8_ad008


title: nicdHomo459_A5_


title: nicdHomo459_A6_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G7_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G7_ad001


title: nicdHomo459_A7_


title: nicdHomo459_A4_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G7_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G7_ad007


title: nicdHomo459_A3_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G7_ad006


title: nicdHomo459_A24


title: nicdHomo459_A2_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G6_ad001


title: nicdHomo459_A22


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G7_ad002


title: nicdHomo459_A20


title: nicdHomo459_A19


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G6_ad007


title: nicdHomo459_A1_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G6_ad006


title: nicdHomo459_A18


title: nicdHomo459_A21


title: nicdHomo459_A17


title: nicdHomo459_A23


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G8_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G7_ad008


title: nicdHomo459_A8_


title: nicdHomo459_A15


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G5_ad012


title: nicdHomo459_A16


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G7_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G6_ad002


title: nicdHomo459_A14


title: nicdHomo459_A13


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G5_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G5_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G5_ad007


title: nicdHomo459_A12


title: nicdHomo459_A11


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G5_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G5_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G6_ad012


title: tdHomo148_P9_

description:
tdTomato control group
(td homo)
SS2_16_148_counts.tab

value: WAP-CRE; R26-tdTomato


title: nicdHomo459_A10


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G4_ad012


title: tdHomo148_P7_


title: tdHomo148_P8_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G4_ad001


title: tdHomo148_P6_


title: tdHomo148_P5_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G4_ad004


title: tdHomo148_P2_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G3_ad012


title: tdHomo148_P4_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G4_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G3_ad007


title: tdHomo148_P3_


title: tdHomo148_P23


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G4_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G3_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G3_ad001


title: tdHomo148_P24


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G3_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G3_ad004


title: tdHomo148_P1_


title: tdHomo148_P21


title: tdHomo148_P22


title: tdHomo148_P20


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G3_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G4_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G4_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G2_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G2_ad001


title: tdHomo148_P18


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G2_ad007


title: tdHomo148_P16


title: tdHomo148_P19


title: tdHomo148_P15


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G2_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G2_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G2_ad002


title: tdHomo148_P12


title: tdHomo148_P13


title: tdHomo148_P14


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G2_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G3_ad002


title: tdHomo148_P10


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G12_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G2_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G12_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G12_ad008


title: tdHomo148_O9_


title: tdHomo148_O7_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G12_ad006


title: tdHomo148_P11


title: tdHomo148_O8_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G12_ad007


title: tdHomo148_O6_


title: tdHomo148_P17


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G12_ad004


title: tdHomo148_O5_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G12_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G11_ad010


title: tdHomo148_O4_


title: tdHomo148_O2_


title: tdHomo148_O24


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G11_ad007


title: tdHomo148_O22


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G11_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G11_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G11_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G11_ad002


title: tdHomo148_O21


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G11_ad012


title: tdHomo148_O19


title: tdHomo148_O1_


title: tdHomo148_O20


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G10_ad012


title: tdHomo148_O18


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G10_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G11_ad008


title: tdHomo148_O16


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G10_ad004


title: tdHomo148_O3_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G10_ad002


title: tdHomo148_O15


title: tdHomo148_O14


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G1_ad012


title: tdHomo148_O12


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G1_ad001


title: tdHomo148_O11


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G1_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G1_ad010


title: tdHomo148_O10


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G10_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G10_ad010


title: tdHomo148_N9_


title: tdHomo148_N7_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G1_ad006


title: tdHomo148_O23


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G1_ad004


title: tdHomo148_N6_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F9_ad012


title: tdHomo148_N5_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F9_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G1_ad008


title: tdHomo148_N3_


title: tdHomo148_N4_


title: tdHomo148_O17


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F9_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G10_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F9_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F9_ad010


title: tdHomo148_N24


title: tdHomo148_N2_


title: tdHomo148_N23


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F9_ad004


title: tdHomo148_N8_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_G1_ad002


title: tdHomo148_N21


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F8_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F9_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F9_ad008


title: tdHomo148_N18


title: tdHomo148_N19


title: tdHomo148_N22


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F8_ad007


title: tdHomo148_N20


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F8_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F8_ad001


title: tdHomo148_N1_


title: tdHomo148_N15


title: tdHomo148_N16


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F8_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F7_ad012


title: tdHomo148_N14


title: tdHomo148_N13


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F7_ad001


title: tdHomo148_N12


title: tdHomo148_N11


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F7_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F7_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F7_ad006


title: tdHomo148_M9_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F7_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F7_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F8_ad002


title: tdHomo148_M4_


title: tdHomo148_M7_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F6_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F8_ad008


title: tdHomo148_N17


title: tdHomo148_M5_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F6_ad010


title: tdHomo148_M6_


title: tdHomo148_M3_


title: tdHomo148_M24


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F6_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F7_ad004


title: tdHomo148_M23


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F6_ad002


title: tdHomo148_N10


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F6_ad008


title: tdHomo148_M21


title: tdHomo148_M22


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F5_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F5_ad001


title: tdHomo148_M19


title: tdHomo148_M20


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F5_ad010


title: tdHomo148_M17


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F6_ad007


title: tdHomo148_M16


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F5_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F6_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F5_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F5_ad002


title: tdHomo148_M2_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F5_ad008


title: tdHomo148_M15


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F4_ad010


title: tdHomo148_M13


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F4_ad002


title: tdHomo148_M14


title: tdHomo148_M12


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F4_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F5_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F4_ad006


title: tdHomo148_M10


title: tdHomo148_M11


title: tdHomo148_M1_


title: tdHomo148_M18


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F4_ad004


title: tdHomo148_L9_


title: tdHomo148_L8_


title: tdHomo148_L7_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F4_ad001


title: tdHomo148_L5_


title: tdHomo148_L4_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F3_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F3_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F3_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F3_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F3_ad010


title: tdHomo148_L2_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F6_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F2_ad012


title: tdHomo148_L23


title: tdHomo148_M8_


title: tdHomo148_L24


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F3_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F2_ad001


title: tdHomo148_L22


title: tdHomo148_L21


title: tdHomo148_L20


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F2_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F2_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F2_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F2_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F4_ad012


title: tdHomo148_L6_


title: tdHomo148_L19


title: tdHomo148_L3_


title: tdHomo148_L17


title: tdHomo148_L18


title: tdHomo148_L15


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F12_ad012


title: tdHomo148_L16


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F12_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F2_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F2_ad002


title: tdHomo148_L13


title: tdHomo148_L12


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F12_ad007


title: tdHomo148_L11


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F12_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F12_ad008


title: tdHomo148_K9_


title: tdHomo148_K8_


title: tdHomo148_L14


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F12_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F11_ad012


title: tdHomo148_K7_


title: tdHomo148_L1_


title: tdHomo148_K6_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F11_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F12_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F11_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F11_ad007


title: tdHomo148_K5_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F11_ad006


title: tdHomo148_K4_


title: tdHomo148_K3_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F11_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F11_ad004


title: tdHomo148_K2_


title: tdHomo148_O13


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F12_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F11_ad001


title: tdHomo148_K24


title: tdHomo148_L10


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F10_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F10_ad010


title: tdHomo148_K22


title: tdHomo148_K23


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F10_ad008


title: tdHomo148_K21


title: tdHomo148_K20


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F10_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F10_ad006


title: tdHomo148_K19


title: tdHomo148_K18


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F10_ad001


title: tdHomo148_K17


title: tdHomo148_K1_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F10_ad004


title: tdHomo148_K16


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F1_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F10_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F1_ad012


title: tdHomo148_K14


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F1_ad010


title: tdHomo148_K13


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F1_ad007


title: tdHomo148_K12


title: tdHomo148_K11


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F1_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F1_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F1_ad004


title: tdHomo148_K10


title: tdHomo148_J9_


title: tdHomo148_J8_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_F1_ad008


title: tdHomo148_J7_


title: tdHomo148_J6_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E9_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E9_ad006


title: tdHomo148_J4_


title: tdHomo148_J5_


title: tdHomo148_J3_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E9_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E9_ad004


title: tdHomo148_J2_


title: tdHomo148_K15


title: tdHomo148_J24


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E8_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E8_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E9_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E8_ad007


title: tdHomo148_J23


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E8_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E9_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E8_ad004


title: tdHomo148_J22


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E8_ad006


title: tdHomo148_J20


title: tdHomo148_J21


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E8_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E9_ad007


title: tdHomo148_J1_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E8_ad008


title: tdHomo148_J18


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E7_ad001


title: tdHomo148_J17


title: tdHomo148_J15


title: tdHomo148_J14


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E7_ad004


title: tdHomo148_J12


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E7_ad006


title: tdHomo148_J13


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E7_ad002


title: tdHomo148_J16


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E6_ad012


title: tdHomo148_J10


title: tdHomo148_J11


title: tdHomo148_J19


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E7_ad008


title: tdHomo148_I9_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E6_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E6_ad007


title: tdHomo148_I8_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E6_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E6_ad004


title: tdHomo148_I7_


title: tdHomo148_I5_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E6_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E7_ad007


title: tdHomo148_I4_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E5_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E5_ad012


title: tdHomo148_I3_


title: tdHomo148_I24


title: tdHomo148_I2_


title: tdHomo148_I23


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E6_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E5_ad006


title: tdHomo148_I21


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E5_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E6_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E4_ad012


title: tdHomo148_I1_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E5_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E5_ad004


title: tdHomo148_I22


title: tdHomo148_I6_


title: tdHomo148_I19


title: tdHomo148_I20


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E4_ad001


title: tdHomo148_I18


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E4_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E5_ad002


title: tdHomo148_I16


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E4_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E4_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E4_ad006


title: tdHomo148_I17


title: tdHomo148_I15


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E5_ad007


title: tdHomo148_I14


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E4_ad008


title: tdHomo148_I13


title: tdHomo148_I12


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E3_ad012


title: tdHomo148_I10


title: tdHomo148_I11


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E3_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E3_ad007


title: tdHomo148_H6_


title: tdHomo148_H7_


title: tdHomo148_H9_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E3_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E3_ad006


title: tdHomo148_H5_


title: tdHomo148_H4_


title: tdHomo148_H8_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E3_ad004


title: tdHomo148_H3_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E3_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E2_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E2_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E2_ad010


title: tdHomo148_H24


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E2_ad007


title: tdHomo148_H2_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E4_ad002


title: tdHomo148_H23


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E2_ad004


title: tdHomo148_H22


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E2_ad002


title: tdHomo148_H21


title: tdHomo148_H20


title: tdHomo148_H1_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E12_ad012


title: tdHomo148_H19


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E3_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E12_ad008


title: tdHomo148_H17


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E12_ad007


title: tdHomo148_H15


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E12_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E12_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E12_ad002


title: tdHomo148_H13


title: tdHomo148_H14


title: tdHomo148_H16


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E11_ad010


title: tdHomo148_H11


title: tdHomo148_H10


title: tdHomo148_G9_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E11_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E2_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E11_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E11_ad004


title: tdHomo148_G7_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E11_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E11_ad002


title: tdHomo148_G8_


title: tdHomo148_H18


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E11_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E12_ad001


title: tdHomo148_G5_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E11_ad008


title: tdHomo148_G6_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E12_ad010


title: tdHomo148_H12


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E10_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E10_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E10_ad004


title: tdHomo148_G24


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E10_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E10_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E10_ad002


title: tdHomo148_G3_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E1_ad012


title: tdHomo148_G20


title: tdHomo148_G21


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E10_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E1_ad001


title: tdHomo148_G1_


title: tdHomo148_G19


title: tdHomo148_G17


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E1_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E1_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E1_ad006


title: tdHomo148_G4_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E1_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E1_ad008


title: tdHomo148_G15


title: tdHomo148_G16


title: tdHomo148_G2_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_E1_ad002


title: tdHomo148_G23


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D9_ad012


title: tdHomo148_G13


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D9_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D9_ad010


title: tdHomo148_G11


title: tdHomo148_G10


title: tdHomo148_G12


title: tdHomo148_F9_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D9_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D9_ad002


title: tdHomo148_G18


title: tdHomo148_F8_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D9_ad008


title: tdHomo148_G14


title: tdHomo148_F6_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D8_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D8_ad012


title: tdHomo148_F5_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D8_ad001


title: tdHomo148_F4_


title: tdHomo148_F3_


title: tdHomo148_F2_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D9_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D8_ad006


title: tdHomo148_F23


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D8_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D8_ad004


title: tdHomo148_F22


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D8_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D7_ad012


title: tdHomo148_F20


title: tdHomo148_F21


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D9_ad006


title: tdHomo148_F7_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D7_ad001


title: tdHomo148_F1_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D7_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D7_ad010


title: tdHomo148_F19


title: tdHomo148_F24


title: tdHomo148_F17


title: tdHomo148_F18


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D7_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D8_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D7_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D7_ad002


title: tdHomo148_F15


title: tdHomo148_F14


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D6_ad012


title: tdHomo148_F13


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D6_ad001


title: tdHomo148_G22


title: tdHomo148_F12


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D7_ad008


title: tdHomo148_F11


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D6_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D6_ad010


title: tdHomo148_F10


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D6_ad004


title: tdHomo148_E9_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D6_ad008


title: tdHomo148_E7_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D5_ad012


title: tdHomo148_E6_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D5_ad001


title: tdHomo148_F16


title: tdHomo148_E5_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D5_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D5_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D5_ad006


title: tdHomo148_E3_


title: tdHomo148_E2_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D5_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D5_ad002


title: tdHomo148_E8_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D5_ad008


title: tdHomo148_E22


title: tdHomo148_E21


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D4_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D6_ad002


title: tdHomo148_E23


title: tdHomo148_E19


title: tdHomo148_E24


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D4_ad007


title: tdHomo148_E1_


title: tdHomo148_E17


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D4_ad002


title: tdHomo148_E18


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D4_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D4_ad010


title: tdHomo148_E4_


title: tdHomo148_E16


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D3_ad012


title: tdHomo148_E15


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D3_ad001


title: tdHomo148_E14


title: tdHomo148_E13


title: tdHomo148_E11


title: tdHomo148_E10


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D3_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D3_ad002


title: tdHomo148_E12


title: tdHomo148_D9_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D4_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D3_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D3_ad007


title: tdHomo148_E20


title: tdHomo148_D8_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D2_ad001


title: tdHomo148_D7_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D2_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D3_ad008


title: tdHomo148_D5_


title: tdHomo148_D4_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D2_ad006


title: tdHomo148_D6_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D3_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D2_ad007


title: tdHomo148_D3_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D2_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D2_ad004


title: tdHomo148_D2_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D2_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D2_ad008


title: tdHomo148_D24


title: tdHomo148_D23


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D12_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D12_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D12_ad010


title: tdHomo148_D1_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D12_ad006


title: tdHomo148_D21


title: tdHomo148_D22


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D12_ad004


title: tdHomo148_D19


title: tdHomo148_D20


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D4_ad006


title: tdHomo148_D18


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D12_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D12_ad002


title: tdHomo148_D16


title: tdHomo148_D15


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D11_ad010


title: tdHomo148_D14


title: tdHomo148_D11


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D11_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D11_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D11_ad006


title: tdHomo148_D13


title: tdHomo148_D12


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D11_ad002


title: tdHomo148_D10


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D11_ad007


title: tdHomo148_C9_


title: tdHomo148_C7_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D12_ad007


title: tdHomo148_C8_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D10_ad012


title: tdHomo148_D17


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D11_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D10_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D10_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D11_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D10_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D10_ad002


title: tdHomo148_C6_


title: tdHomo148_C2_


title: tdHomo148_C5_


title: tdHomo148_C4_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D10_ad004


title: tdHomo148_C3_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D1_ad012


title: tdHomo148_C23


title: tdHomo148_C22


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D1_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D1_ad010


title: tdHomo148_C1_


title: tdHomo148_C21


title: tdHomo148_C20


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D1_ad006


title: tdHomo148_C18


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D1_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C9_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C9_ad012


title: tdHomo148_C17


title: tdHomo148_C15


title: tdHomo148_C14


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C9_ad004


title: tdHomo148_C13


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C8_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D1_ad001


title: tdHomo148_C11


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C9_ad008


title: tdHomo148_C24


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C8_ad012


title: tdHomo148_C19


title: tdHomo148_C12


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D1_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C8_ad010


title: tdHomo148_C10


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C8_ad006


title: tdHomo148_B8_


title: tdHomo148_B7_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_D1_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C8_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C9_ad010


title: tdHomo148_C16


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C8_ad002


title: tdHomo148_B6_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C7_ad012


title: tdHomo148_B4_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C7_ad007


title: tdHomo148_B5_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C7_ad001


title: tdHomo148_B3_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C7_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C7_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C6_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C7_ad004


title: tdHomo148_B21


title: tdHomo148_B2_


title: tdHomo148_B20


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C8_ad007


title: tdHomo148_B24


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C7_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C6_ad006


title: tdHomo148_B9_


title: tdHomo148_B18


title: tdHomo148_B1_


title: tdHomo148_B19


title: tdHomo148_B23


title: tdHomo148_B22


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C6_ad007


title: tdHomo148_B17


title: tdHomo148_B16


title: tdHomo148_B13


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C6_ad008


title: tdHomo148_B15


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C6_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C5_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C6_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C5_ad001


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C5_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C5_ad007


title: tdHomo148_B12


title: tdHomo148_B11


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C5_ad006


title: tdHomo148_A9_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C6_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C5_ad008


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C5_ad004


title: tdHomo148_A8_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C4_ad001


title: tdHomo148_A7_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C5_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C4_ad006


title: tdHomo148_A6_


title: tdHomo148_B14


title: tdHomo148_A5_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C4_ad010


title: tdHomo148_A3_


title: tdHomo148_A4_


title: tdHomo148_A24


title: tdHomo148_A23


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C4_ad008


title: tdHomo148_A2_


title: tdHomo148_B10


title: tdHomo148_A20


title: tdHomo148_A21


title: tdHomo148_A22


title: ES cells - Oct4_DKO_rep1

city: Bethesda

first: Michael

last: Bustin

state: MD

address: Building 37, Room 3122

department: National Cancer Institute

institute: National Institutes of Health

data_processing:
Basecalling was performed using RTA version 2.4.11
Demultiplexing and FASTQ generation was performed using bcl2fastq (version 1.8.4) allowing 1 mismatch.
Trimming of adapters and low-quality bases was performed using CutAdapt (v.1.16).
Reads were mapped to UCSC mm9 reference genome using BWA 07.17
Peak detection of enriched binding regions was performed using MACS2 v. 2.1.1.20160309 with the default settings
Genome_build: mm9
Supplementary_files_format_and_content: peak text files

source_name: ES cells

growth_protocol: ChIP-seq were performed in Hmgn1+/+n2+/+ (WT) and Hmgn1-/- n2-/- (DKO) mouse ES, MEF and splenic B cells.

extract_protocol:
DNA were blunt ended, ligated to adapters, amplified with PCR and size selected. The libraries were sequenced at 75 bp read length with Illumina NextSeq 500 or 101bp with Hiseq 2000 by the NIH CCR-sequencing facility.
Libraries were prepared according to Illumina's instructions

tag: cells

value: Mouse embryonic stem cells

tag: genotype/variation

value: DKO

tag: antibody


title: ES cells - Oct4_DKO_rep2


title: ES cells - PE Input_DKO


title: ES cells - Oct4_WT_rep2

value: WT


title: tdHomo148_A1_


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C3_ad001


title: ES cells - PE Input_WT


title: ES cells - Oct4_WT_rep1


title: tdHomo148_A18


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C3_ad007


title: tdHomo148_A19


title: tdHomo148_A17


title: tdHomo148_A16


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C3_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C3_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C4_ad002


title: tdHomo148_A15


title: tdHomo148_A14


title: tdHomo148_A13


title: tdHomo148_A12


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C3_ad004


title: tdHomo148_A11


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C3_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C3_ad002


title: Bono_05253_C8b_NPC_Bonobo

description:
processed data file:
Linker_Marchetto_Gage_count.txt
Linker_Marchetto_Gage_tpm.txt
Bono_05253_C8b

value: Bonobo

value: M


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C2_ad001


title: Bono_01086_c1_NPC_Bonobo

description:
processed data file:
Linker_Marchetto_Gage_count.txt
Linker_Marchetto_Gage_tpm.txt
Bono_01086_c1


title: Bono_05253_c7B_NPC_Bonobo

description:
processed data file:
Linker_Marchetto_Gage_count.txt
Linker_Marchetto_Gage_tpm.txt
Bono_05253_c7B


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C2_ad012


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C2_ad007


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C2_ad010


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C2_ad006


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C2_ad002


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C2_ad004


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C12_ad010


title: tdHomo148_A10


title: DMSO-treated NRK-52E cells at 24h, biological rep3

type: RNA

city: Manchester

first: Kate

last: Bloch

address: Alderley Park, Alderley Edge

country: United Kingdom

institute: Manchester University

description: Gene expression data from cells treated with chlorothalonil

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Rat Genome 230 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using the Affymetrix GeneArray scanner.

data_processing: Signal condensation and normalization was performed using GC-RMA (Robust Multiarray Analysis algorithm) using GeneSpring GX11.

label: biotin

organism: Rattus norvegicus

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

growth_protocol: NRK-52E cells (DeLarco and Todaro, 1978) (ATCC, CRL-1571) were cultured in Dulbecco’s Modified Eagle Medium (DMEM) with 10% fetal calf serum, penicillin 100 I.U./ml, and streptomycin solution 100 µg/ml in a humidified 5% CO2 incubator at 370C.

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: NRK-52E cells were cultured to confluence on 6-well plates. Cells were then exposed to CHL dissolved in DMSO (0.1%) at the IC10 concentration at 72h (1.1 μM CHL) or DMSO only as control. After 6h, 24h and 72h the medium was removed and RNA was extracted from the cells. Three studies were conducted at each time point.

tag: cell line

tag: cell type

value: rat kidney epithelial proximal tubule cells

value: Osborne-Mendel


title: Chlorothalonil-treated NRK-52E cells at 72h, biological rep3

value: NRK-52E cells (DeLarco and Todaro, 1978) (ATCC, CRL-1571)


title: Chlorothalonil-treated NRK-52E cells at 72h, biological rep1


title: CEMBA190711_8J_1_CEMBA190711_8J_2_C12_ad008


title: Gorilla_cA6_NPC_Gorilla

description:
processed data file:
Linker_Marchetto_Gage_count.txt
Linker_Marchetto_Gage_tpm.txt
Gorilla_cA6

organism: Gorilla


title: DMSO-treated NRK-52E cells at 72h, biological rep1


title: Chlorothalonil-treated NRK-52E cells at 72h, biological rep2