title: Tq7CJ

status: Public on Sep 28 2020

city: Fuzhou

first: Yijie

last: Chen

state: Fujian

address: No. 15, ShangxiadianRoad, Candgshan Zone

department: College of Bee Science

institute: Fujian Agriculture and Forestry University

data_processing:
Sequencing libraries were generated at Novogene (Beijing, China) using NEBNext1 Ultra™ RNA Library Prep Kit for Illumina (NEB, USA) following manufacturer’s recommendations and index codes were added to attribute sequences to each sample
Raw reads of FASTQ format were first processed through in-house Perl scripts to obtain clean reads by removing reads containing adapter, reads containing ploy-N and low-quality reads (quality limit 0.05). At the same time, the Q20, Q30, GC content, and sequence duplication level of the clean data were calculated.
An index of the A. mellifera genome was built using Bowtie v2.0.6 (Broad Institute, Cambridge, MA, USA) and single-end clean reads were aligned to the A. mellifera genome using TopHat v2.0.9 (Broad Institute).
The Reads Per Kilo base of exon model per Million mapped reads (RPKM) of each gene were calculated based on the length of the gene and reads count mapped to this gene. At the same time, RPKM was also considering the effect of sequencing depth and gene length for the reads count. This was currently the most commonly used method for estimating gene expression levels.
Prior to differential gene expression analysis, the read counts of each sequenced library were adjusted by edgeR program package through one scaling normalized factor. Differential expression analysis of 2 conditions was performed using the DEGSeq R package (1.12.0; TNLIST, Beijing, China). The P-values were adjusted using the Benjamini and Hochberg method. A corrected P-value of 0.005 and a log2 (fold change) of ±1 were set as the threshold for significantly differential expression.
Genome_build: Apis mellifera Amel_4.5
Supplementary_files_format_and_content: Excel files include RPKM values for each Sample ...

organism: Apis cerana cerana

source_name: Head

extract_protocol:
Total RNAs were extracted from the heads of 2 nurse samples (N7BY and Tq22BY) and 3 forager samples (N18CJ, N22CJ, Tq7CJ) respectively using the guanidinium-HCl procedure described in Sambrook et al. (1989) (31). Potential DNA contaminants were removed using DNA-free kits from Ambion. RNA purity and integrity were analyzed using a NanoPhotometer® spectrophotometer (IMPLEN, CA, USA) and an Agilent Bioanalyzer 2100 system (Agilent Technologies, CA, USA). RNA concentration was measured using Qubit® RNA Assay Kit in Qubit® 2.0 Flurometer (Life Technologies, CA, USA).
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: common name

value: Honey bee

tag: developmental stage

value: 7-day-old precocious foragers (Tq7CJ)

value: Head


title: N22CJ

type: SRA

country: China

library_source: transcriptomic

molecule: total RNA

value: 22-day-old normal foragers (N22CJ)

tag: tissue


title: N18CJ

value: 18-day-old normal foragers (N18CJ)


title: Young RD 3 RNAseq

status: Public on Sep 29 2020

city: New York

first: Donald

middle: K

last: Scott

state: New York

address: 1428 Madison Avenue

department: Diabetes Obesity and Metabolism Institute

country: USA

institute: MSSM

description:
RNAseq
QC_statistics_to_deliver_young.txt
kallisto_est_count_matrix_young.txt
featureCounts_count_matrix_young.txt
DEseq2_results_HFD_SD_young.txt
SD1WK3

data_processing:
>> RNA-Seq <<
Reads were aligned to the mm10 mouse reference using STAR aligner (v2.4.2a)
Quantification of genes annotated in Gencode vM5 was performed using featureCounts (v1.4.3)
Quantification of transcripts used Kalisto
QC were collected with Picard (v1.83) and RSeQC
Normalization of feature counts and differential expression analysis was done using the DESeq2 package
Genome_build: mm10
Supplementary_files_format_and_content: count and DEseq2 tab-delimited text files
>> Methyl-seq<<
Trim raw reads for quality Package: Trimmomatic Tool: illuminaclip
Map sequencing reads to mm10 Package: BSMAP Tool: BSMAP
Calculate percent methylation at CpGs Package: BSMAP Tool: methratio.py
Split by strand Package: BEDtools Tool: Split
Merge & sort by strand Package: BEDtools Tool: Merge
Remove Duplicates Package: Picard Tool: MarkDuplicates
Merge strands Package: BEDtools Tool: Merge
Filter for properly paired reads Package: Picard Tool: MarkDuplicates
Clip overlapping reads Package: BSMAP Tool: methratio.py
Genome_build: mm10
Supplementary_files_format_and_content: compressed tab-delimited methyl call txt files

organism: Mus musculus

source_name: Islets

growth_protocol: C57/BL6J mice

extract_protocol:
Islets were isolated, RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit (Cat#FC-122-1001) was used with 1 ug of total RNA for the construction of sequencing libraries.
RNA sequencing libraries were prepared using the TruSeqStranded mRNA Library Preparation Kit in accordance with the manufacturer’s instructions (Illumina, Inc., San Diego, CA).

treatment_protocol: Male mice 8 weeks or 52 weeks old were put on diets of 41%  or 13.1 % kcal from fat diet for 1 week

tag: age group

value: Young

tag: diet

value: standard diet

tag: strain

value: Islets

tag: age

value: 8-10 weeks

tag: genotype

value: wild type


title: N7BY

value: 7-day-old normal nurses (N7BY)


title: A549 in which HERV1 was excised, clone 2

city: Minato-ku

first: Kei

last: Sato

state: Tokyo

address: 4-6-1 Shiroganedai

department: Department of Microbiology and Immunology

country: Japan

institute: The Institute of Medical Science, The University of Tokyo

description:
PolyA RNA
processed data file: HERV-excised.matrix.csv

data_processing:
Sequenced reads were trimmed with Trimmomatic.
Sequenced reads were mapped to the human reference genome using STAR.
Mapped reads on respective genetic features were counted using featureCounts.
Genome_build: hg38 (GRCh38)
Supplementary_files_format_and_content: HERV-excised.matrix.csv: Comma-separated text file includes expression read count matrix.

organism: Homo sapiens

source_name: Lung adenocarcinoma (A549) cells

growth_protocol: F-12K medium with 5.0 µg/mL blasticidin.

extract_protocol:
QIAamp RNA Blood Mini Kit.
RNA libraries were prepared for sequencing using standard Illumina protocols. Quality checks, library construction, and sequencing were performed by Novogene (https://en.novogene.com).

tag: cell line

tag: genotype/variation

value: HERV1 excised


title: CamKIIa_16wpi_PrD_cortex_3

city: Zurich

first: Claudia

last: Scheckel

state: NY

address: Schmelzbergstrasse 12

department: Institute of Neuropathology

country: Switzerland

institute: University Hospital Zurich

description: GeneCounts.txt

data_processing:
Library strategy: Ribo-seq
filtering (min:0-13:20,mean:14-39:20)
clipping of 3'linker sequence (GTGTCAGTCACTTCCAGCGG)
collapsing of exact sequences
removal of 5'linker (14nt)
alignment with STAR
Genome_build: Ensembl GRCm38.p5
Supplementary_files_format_and_content: Txt file containing uniquely and unambigously mapped reads per gene (column 3 of GeneCounts output of STAR)

source_name: cortex

growth_protocol: Dissected flash-frozen brain regions or hemispheres from control or prion diseased mice

extract_protocol:
Partial RNase digestion (MNase treatment) and isolation of ribosome protected fragments (GFP immunoprecipitation followed by ultracentrifugation)
CIP treatment, 3'linker ligation, reverse transcription, circularization and PCR ampflication

treatment_protocol: Intraperitoneal inoculation of non-infectious brain homogenate or prions

tag: cre driver

value: CamKIIa

tag: time point

tag: treatment

value: prions

tag: gender

value: M

tag: multiplex index

value: TCGA


title: Tq22BY

value: 22-day-old overaged or reverted nurses (Tq22BY)


title: Q375L with meso-hexestrol

type: other

city: RTP

first: NIEHS

last: Microarray Core

state: NC

address: 111 T.W. Alexander Drive

department: DIR

institute: NIEHS

description:
coregulator peptide profile data from HEK293 Q375L cells with Hex
cell lysate

hyb_protocol: Fully automated in a PamStation96  40 minutes at room temperature using 2 cycles per minute.

scan_protocol: Fully automated in the camera module of the  PamStation96.

data_processing: Each combination of genotype and ligand was tested using three arrays and thus resulted in three binding values for each peptide. Each combination of genotype and ligand was tested using three arrays and thus resulted in three binding values for each peptide. These triplicates were used to calculate a mean binding and log10-fold change of binding (modulation Index, MI) vs. WT apo (unliganded) ERα (control), and to determine the significance of this modulation by Student’s t-Test with post-hoc false discovery rate correction.

label: ER⍺ antibody + Goat-anti-rat-FITC

molecule: other

source_name: cell line

label_protocol: Binding was detected using  ER⍺ antibody  + fluorescently labeled secundary antibody and quantified as arbitrary unit’s fluorescence using Bionavigator Software (PamGene).

growth_protocol: HEK293 cells were seeded in 100 x 20 mm dish at 2 x107 cells per dish overnight. A total of 2 μg of WT ERα or Q375 mutant expression plasmids were transfected into the cells using Effectene transfection reagent.

extract_protocol: Frozen cells were lysed using a micro-dismembrator in lysis buffer containing protease inhibitor cocktail, centrifuged and the soluble fraction was collected. Crude lysate of ERα genotype expressing cells was incubated with or without ligand on a PamChip array with 154 coregulator motifs (PamGene #88101).

treatment_protocol: After overnight, cells were starved with charcoal-stripped medium for 24-hours and then harvested. Cell pellets were collected and suspended in ice-cold lysis buffer supplemented with protease inhibitor cocktail (150 μL per 1x107 cells).

tag: organ

value: embryonic kidney


title: Q375H with meso-hexestrol

description:
coregulator peptide profile data from HEK293 Q375H cells with Hex
cell lysate


title: Q375E with meso-hexestrol

description:
coregulator peptide profile data from HEK293 Q375E cells with Hex
cell lysate


title: Q375H with diethylstilbestrol

description:
coregulator peptide profile data from HEK293 Q375H cells with DES
cell lysate


title: WT with meso-hexestrol

description:
coregulator peptide profile data from HEK293 WT cells with Hex
cell lysate


title: Q375L with diethylstilbestrol

description:
coregulator peptide profile data from HEK293 Q375L cells with DES
cell lysate


title: Q375K with meso-hexestrol

description:
coregulator peptide profile data from HEK293 Q375K cells with Hex
cell lysate


title: WT with diethylstilbestrol

description:
coregulator peptide profile data from HEK293 WT cells with DES
cell lysate


title: CamKIIa_16wpi_PrD_hippocampus_3

description: GeneCounts.txt

source_name: hippocampus

value: F

value: TACG


title: Q375K with diethylstilbestrol

description:
coregulator peptide profile data from HEK293 Q375K cells with DES
cell lysate


title: Q375A with diethylstilbestrol

description:
coregulator peptide profile data from HEK293 Q375A cells with DES
cell lysate


title: Q375H with diethyl-tetrahydrochrysene

description:
coregulator peptide profile data from HEK293 Q375H cells with THC
cell lysate


title: Q375E with diethyl-tetrahydrochrysene

description:
coregulator peptide profile data from HEK293 Q375E cells with THC
cell lysate


title: Q375L with diethyl-tetrahydrochrysene

description:
coregulator peptide profile data from HEK293 Q375L cells with THC
cell lysate


title: Q375E with diethylstilbestrol

description:
coregulator peptide profile data from HEK293 Q375E cells with DES
cell lysate


title: Q375A with diethyl-tetrahydrochrysene

description:
coregulator peptide profile data from HEK293 Q375A cells with THC
cell lysate


title: Q375K with diethyl-tetrahydrochrysene

description:
coregulator peptide profile data from HEK293 Q375K cells with THC
cell lysate


title: WT with diethyl-tetrahydrochrysene

description:
coregulator peptide profile data from HEK293 WT cells with THC
cell lysate


title: Q375L with 11b-ethyl estradiol

description:
coregulator peptide profile data from HEK293 Q375L cells with Et-E2
cell lysate


title: Q375A with meso-hexestrol

description:
coregulator peptide profile data from HEK293 Q375A cells with Hex
cell lysate


title: Q375H with 11b-ethyl estradiol

description:
coregulator peptide profile data from HEK293 Q375H cells with Et-E2
cell lysate


title: Q375A with 11b-ethyl estradiol

description:
coregulator peptide profile data from HEK293 Q375A cells with Et-E2
cell lysate


title: WT with 11b-ethyl estradiol

description:
coregulator peptide profile data from HEK293 WT cells with Et-E2
cell lysate


title: Q375E with 11b-chloromethyl estradiol

description:
coregulator peptide profile data from HEK293 Q375E cells with CME
cell lysate


title: Q375L with 11b-chloromethyl estradiol

description:
coregulator peptide profile data from HEK293 Q375L cells with CME
cell lysate


title: Q375H with 11b-chloromethyl estradiol

description:
coregulator peptide profile data from HEK293 Q375H cells with CME
cell lysate


title: Q375K with 11b-chloromethyl estradiol

description:
coregulator peptide profile data from HEK293 Q375K cells with CME
cell lysate


title: WT with 11b-chloromethyl estradiol

description:
coregulator peptide profile data from HEK293 WT cells with CME
cell lysate


title: Q375A with 11b-chloromethyl estradiol

description:
coregulator peptide profile data from HEK293 Q375A cells with CME
cell lysate


title: Q375K with 17-b-Estradiol

description:
coregulator peptide profile data from HEK293 Q375K cells with E2
cell lysate


title: Q375L with DMSO

description:
coregulator peptide profile data from HEK293 Q375L cells with veh
cell lysate


title: Q375E with 17-b-Estradiol

description:
coregulator peptide profile data from HEK293 Q375E cells with E2
cell lysate


title: Q375H with DMSO

description:
coregulator peptide profile data from HEK293 Q375H cells with veh
cell lysate


title: Q375E with DMSO

description:
coregulator peptide profile data from HEK293 Q375E cells with veh
cell lysate


title: Q375E with 11b-ethyl estradiol

description:
coregulator peptide profile data from HEK293 Q375E cells with Et-E2
cell lysate


title: 423R

city: Stirling

first: Iain

last: Gallagher

address: Room 4B133 Cottrell Building, University of Stirling, Airthrey Road

department: Faculty of Health Sciences and Sport

country: United Kingdom

institute: University of Stirling

description: Text file of raw RNA-seq derived counts for genes in the rat genome (ver 6.0) (Ensembl release 89)

data_processing:
The core facility carried out the following conversion and quality control steps on the raw data. Per-cycle base call files were converted to fastq using the bcl2fastq software (v2.17.1.14), library content was checked with the fastq_screen utility (v0.4.2) and fastq file quality was examined using FastQC (0.11.5). After data delivery FastQC (0.11.5) was used to assess quality and trimmotmatic was used to remove contaminating adapter sequences.
Reads were aligned to the rat genome (version 6, Ensembl release 89) and gene counts generated using the R package Rsubread (1.26.1) with the following settings: phredOffset=33, input_format = "gzFASTQ", output_format = 'BAM', output_file = output.files, nthreads=4, nTrim5=12 (for alignment) and isGTFAnnotationFile=TRUE, isPairedEnd=TRUE, strandSpecific=2, nthreads=4 (for counts).
Genes with fewer than 10 reads per million bases we removed before further analysis.
Genome_build: Rattus norvegicus genome version 6, Ensembl 89
Supplementary_files_format_and_content: CSV files generated using edgeR (3.18.1). Gene counts were filtered to remove genes with low counts by identifying the CPM at a count of 10 in line with guidelines published by the edgeR authors (Lun, Chen, Smyth, 2016). The dataset was then normalised using TMM normalisation (Robinson and Oshlack 2010).

organism: Rattus norvegicus

source_name: RNA derived from Rattus norvegicus tibialis anterior muscle

extract_protocol:
Total RNA was extracted from muscle using Qiagen RNEasy kit. RNA was quantified using the nanodrop instrument and RNA quality was assesed using the Agilent bioanalyser.
The RNA library was prepared for RNA-sequencin using the Illumina Tru-Seq kit following the manufacturers directions.
RNA-Sequencing was carried out using the Illumina HiSeq 4000 instrument.

treatment_protocol: In vivo electroporation was used to knock out (ko) or knock in (ki) the vitmain D receptor in the tibialis anterior muscle of one hindlimb in rats. VDR-KD groups received VDR shRNA (Table S1) in right leg TAM and scramble shRNA in left leg TAM. VDR-OE groups received pCAGGS-mVDR in right leg TAM, and empty pCAGGS controls in left leg TAM. Immediately following, one HV (900 V/cm, 100 µ-sec pulse), and four LV (90 V/cm, 100 m-sec) pulses were administered across the distal limb via tweezer-electrodes attached to an ECM-830 electroporator (BTX, Holliston, MA). Animals subsequently received a subcutaneous injection of carprofen (50mg/kg), before recovery from anesthesia. RNA-seq was carried out with the contrast of interest being either ko v control limb or ki v control limb.

tag: animal identifier

tag: vdr status

value: IVE VDR knock-out


title: Q375K with DMSO

description:
coregulator peptide profile data from HEK293 Q375K cells with veh
cell lysate


title: CamKIIa_16wpi_PrD_hippocampus_2

description: GeneCounts.txt


title: Q375A with DMSO

description:
coregulator peptide profile data from HEK293 Q375A cells with veh
cell lysate


title: Q375A with 17-b-Estradiol

description:
coregulator peptide profile data from HEK293 Q375A cells with E2
cell lysate


title: Q375H with 17-b-Estradiol

description:
coregulator peptide profile data from HEK293 Q375H cells with E2
cell lysate


title: Sf9_rep1

city: Gwangjin-gu, Seoul

first: Nayoung

last: Park

address: 120 Neungdong-ro

country: South Korea

institute: Konkuk University

description:
Baculovirus_FPKM.xlsx
Baculovirus_raw_readcount.xlsx

data_processing:
Sequenced RNA-sequencing reads were trimmed for adapter seuquence, and processed for eliminating artifacts such as contaminant DNA or PCR duplicates using Trimmomatic 0.38 with parameters SLIDINGWINDOW:4:15 TRAILING:3  LEADING:3 MINLEN:36.
Trimmed reads were mapped to reference genome (UCSC hg19 +  GCF_000838485.1_ViralProj14023) using the Bowtie2 2.3.4.1 aligner.
Fragments per kilobase of transcript per million mapped reads (FPKM) was estimated  with R package countToFPKM for viral genes, and with StringTie for human genes.
Fold change, and variance were calculated using edgeR.
Genome_build: UCSC hg19, GCF_000838485.1_ViralProj14023
Supplementary_files_format_and_content: Matrix table with raw read counts for every gene and every samples

organism: Spodoptera frugiperda

source_name: ovary epithelial cells

growth_protocol: Human embryonic kidney 293TT cells were grown at 37°C in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fetal bovine serum (FBS) and 1% penicillin-streptomycin. Spodoptera frugiperda 9 (Sf9) insect cells were maintained at 27°C in Sf-900 medium containing 3% FBS and 1% antibiotic-antimycotic.

extract_protocol:
After 72 hours of virus infection, supernatants were removed, and cells were lysed for RNA isolation.
total RNA libraries were prepared for sequencing using TruSeq Stranded Total RNA LT Sample Prep Guide

treatment_protocol: 293TT and Sf9 cells were infected with recombinant AcHERVenv-CMV-GFP at a multiplicity of infection (MOI) of 30.

value: AcHERVenv-CMV-GFP infected


title: Sf9_rep2


title: Sf9_rep3


title: CEMBA181220_5F_4_CEMBA181220_5F_5_A1_ad001

city: La Jolla

first: Joseph

middle: R

last: Ecker

state: CA

address: 10010 North Torrey Pines Road

department: Genomic Analysis Laboratory

institute: HHMI-Salk-Institute

library_source: genomic

data_processing:
Library strategy: snmC-seq2
Reads trimed with Cutadapt for adapters and low quality bases (Phred score >= 20)
The resulting files are mapped to in-silico bisulfite converted mm10 reference genome using Bismark.
The raw BAM file will be filtered using samtools to filter reads by MAPQ > 10 and use Picard to remove PCR duplicates
Tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls will be generated with in-house developing package using the filtered BAM files
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls. Columns are: 1. Chromosome, 2. Position, 3. Strand, 4. Cytosin Context, 5. methylated base call, 6. total mapped base call, 7. not used, place holder column

molecule: genomic DNA

source_name: C57BL/6J Male P56 Mouse Brain

growth_protocol: All mice are C57BL/6J Male, brain dissected in P56

extract_protocol:
the brain of P56 male C57BL/6J mouse will be removed and cut into 600 microns thick coronal sections using a tissue matrix. Then each region will be microdissected from the coronal tissue sections based on identified landmarks and brain atlas coordinates, as defined in Allen brain atlas CCF3 (Avaliable at: http://atlas.brain-map.org). For each dissection region, the tissue from several littermate mice will be combined together into to separate replicate groups. The number of animals in a replicate depends on the size of the tissue. Nuclei preparation will be stained with the fluorescently labeled anti-NeuN body and nucleic acid stain Hoechst 33342.
Library prepared following protocol discribed in Luo, Chongyuan, Angeline Rivkin, Jingtian Zhou, Justin P. Sandoval, Laurie Kurihara, Jacinta Lucero, Rosa Castanon, et al. 2018. “Robust Single-Cell DNA Methylome Profiling with snmC-seq2.” Nature Communications 9 (1): 3824.

tag: brain region

value: ACB

tag: Sex

value: male


title: CEMBA181220_5F_4_CEMBA181220_5F_5_A1_ad007


title: CEMBA181220_5F_4_CEMBA181220_5F_5_A1_ad004


title: CEMBA181220_5F_4_CEMBA181220_5F_5_A1_ad012


title: CEMBA181220_5F_4_CEMBA181220_5F_5_A1_ad006


title: CEMBA181220_5F_4_CEMBA181220_5F_5_A10_ad001


title: CEMBA181220_5F_4_CEMBA181220_5F_5_A1_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H9_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H9_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H9_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H9_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H9_ad007


title: CEMBA190117_6A_1_CEMBA190117_6A_2_A12_ad002

value: ACA,PL,ILA


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H9_ad008


title: Old HFD 2 RNAseq

description:
RNAseq
QC_statistics_to_deliver_old.txt
kallisto_est_count_matrix_old.txt
featureCounts_count_matrix_old.txt
DEseq2_results_HFD_SD_old.txt
HFD1YEAR2

tag: age group

value: Old

value: high fat diet

tag: tissue

value: Islets

value: 1 year


title: A549_ZNF320

description:
PolyA RNA
processed data file: KZFP_OE.expression.matrix.csv

data_processing:
Sequenced reads were trimmed with Trimmomatic.
Sequenced reads were mapped to the human reference genome using STAR.
Mapped reads on respective genetic features were counted using featureCounts.
Genome_build: hg38 (GRCh38)
Supplementary_files_format_and_content: KZFP_OE.expression.matrix.csv: Comma-separated text file includes expression read count matrix.

growth_protocol: F-12K medium with 1.0 µg/mL puromycin.

treatment_protocol: Doxycycline (1.0 µg/mL).

value: ZNF320 overexpression


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H8_ad012

tag: strain


title: CEMBA181220_5F_4_CEMBA181220_5F_5_A1_ad010

tag: age


title: WT with DMSO

description:
coregulator peptide profile data from HEK293 WT cells with veh
cell lysate


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H8_ad001


title: 419R

value: IVE VDR knock-in


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H8_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H8_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H8_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H8_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H8_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H7_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H7_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H7_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H7_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H7_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H7_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H6_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H6_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H6_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H7_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H6_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H6_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H6_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H6_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H6_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H5_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H5_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H5_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H4_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H7_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H4_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H4_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H4_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H4_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H3_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H3_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H3_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H3_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H3_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H2_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H3_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H2_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H12_ad012


title: CamKIIa_24wpi_ctrl_cortex_1

description: GeneCounts.txt

value: CamKIIa

value: non-infectious brain homogenate

value: ATCG


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H12_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H12_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H12_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H12_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H12_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H12_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H11_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H11_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H4_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H4_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H11_ad007


title: Q375K with 11b-ethyl estradiol

description:
coregulator peptide profile data from HEK293 Q375K cells with Et-E2
cell lysate

value: embryonic kidney


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H3_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H11_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H10_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H10_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H10_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H10_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H10_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H10_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H1_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H1_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H10_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H12_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H1_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H1_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G9_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H1_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G9_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G9_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G8_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H1_ad006


title: CEMBA190117_6A_1_CEMBA190117_6A_2_A10_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G8_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G9_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G9_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G8_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G8_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G8_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G8_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H1_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G8_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G7_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G7_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G7_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G7_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G7_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G7_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G7_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G6_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G6_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G6_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G6_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G6_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G6_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G5_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G5_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G5_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G5_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G7_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G4_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G4_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G5_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G4_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G4_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G4_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G4_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G2_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G4_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G2_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G6_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G2_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G2_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G12_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G12_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G5_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G12_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G4_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G12_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G12_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G12_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G12_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G11_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G11_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G11_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G11_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G11_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G11_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G11_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G2_ad006


title: WT with 17-b-Estradiol

description:
coregulator peptide profile data from HEK293 WT cells with E2
cell lysate


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G10_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G2_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G10_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G10_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G5_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G10_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G10_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G10_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G11_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G1_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G1_ad010


title: Q375L with 17-b-Estradiol

description:
coregulator peptide profile data from HEK293 Q375L cells with E2
cell lysate


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G1_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F9_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G1_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F9_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G10_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F9_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F9_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F9_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F8_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F7_ad007


title: CEMBA181220_5F_4_CEMBA181220_5F_5_A1_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F7_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F7_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F7_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F7_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_G10_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F7_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F7_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F7_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F6_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F6_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F6_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F9_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F6_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F6_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F6_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F5_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F5_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F5_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F5_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F9_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F5_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F5_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F3_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F3_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F3_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F3_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F3_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F3_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F6_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F2_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F2_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F2_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F2_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F2_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F12_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F2_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F12_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F12_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F12_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F12_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F3_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F3_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F12_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F11_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F12_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F12_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F10_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F1_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F10_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F10_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F10_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F10_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F10_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F10_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F1_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F11_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F11_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F1_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F1_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F1_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E9_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F1_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E9_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_H4_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E9_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E9_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E9_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E8_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E8_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E9_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E8_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E8_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E8_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E8_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E7_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_F1_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E7_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E7_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E8_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E6_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E6_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E7_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E6_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E6_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E7_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E6_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E4_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E4_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E4_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E4_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E4_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E3_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E4_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E4_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E8_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E3_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E3_ad007


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E3_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E3_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E3_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E3_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E6_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E4_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E2_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E2_ad001


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E2_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E2_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E12_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E2_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E2_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E2_ad002


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E12_ad004


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E12_ad006


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E11_ad012


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E3_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E11_ad008


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E11_ad010


title: CEMBA181220_5F_2_CEMBA181220_5F_3_E10_ad007


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title: CEMBA181218_5F_1_CEMBA181218_5F_2_G2_ad006


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G2_ad008


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G2_ad004


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G12_ad010


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G12_ad006


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G12_ad012


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G12_ad004


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G11_ad004


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G11_ad007


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G11_ad006


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G11_ad002


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G10_ad010


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G10_ad006


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G10_ad008


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G12_ad008


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G10_ad012


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G10_ad004


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G10_ad007


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G1_ad012


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G1_ad001


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G1_ad007


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G10_ad002


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G1_ad010


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G1_ad006


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G1_ad002


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G11_ad008


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F9_ad012


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G1_ad008


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F9_ad006


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F9_ad010


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F9_ad008


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F8_ad012


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F9_ad004


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F9_ad001


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F8_ad001


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F8_ad007


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F8_ad010


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F8_ad008


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F8_ad006


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F7_ad006


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F7_ad012


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F7_ad007


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F9_ad007


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F8_ad002


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F7_ad002


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F7_ad004


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F6_ad012


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F6_ad007


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F7_ad008


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F6_ad004


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F6_ad010


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F6_ad002


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F6_ad006


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F6_ad008


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F5_ad001


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F5_ad006


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F3_ad012


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F5_ad002


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F5_ad008


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F3_ad007


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F3_ad004


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F3_ad002


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F2_ad010


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F2_ad007


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F3_ad008


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F2_ad012


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F2_ad006


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F2_ad001


title: CEMBA181218_5F_1_CEMBA181218_5F_2_G1_ad004


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F2_ad008


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F12_ad010


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F12_ad012


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F12_ad004


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F12_ad001


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F5_ad007


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F5_ad010


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F11_ad008


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F5_ad012


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F3_ad010


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F12_ad006


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F11_ad004


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F10_ad008


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F11_ad012


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F11_ad006


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F10_ad010


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F10_ad012


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F11_ad010


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F1_ad012


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F1_ad001


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F1_ad010


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F10_ad001


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F10_ad004


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F10_ad007


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F1_ad007


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F1_ad002


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F1_ad008


title: KO serum starved insulin rapamycin rep 4

city: Schwerzenbach

first: Michael

middle: Robert

last: MacArthur

address: Schorenstrasse 16

department: D-HEST

institute: ETH Zurich

data_processing:
All samples passed quality control using FastQC
Paired end reads were aligned using the 'align' function from the Rsubread package using default settings
Mapped reads were assigned to genomic features using the 'featureCounts' function from the Rsubread package
Genome_build: Ensembl mouse GRCm38.p6
Supplementary_files_format_and_content: CSV file with uncorrected count values for each sample

source_name: MEF cells

extract_protocol:
RNA was extracted using Trizol reagent
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: genotype

value: insulin rapamycin

tag: cell type

value: MEF


title: KO serum starved insulin rep 3

value: insulin


title: KO serum starved insulin rapamycin rep 1


title: KO serum starved insulin rapamycin rep 2


title: KO serum starved insulin rep 1


title: KO serum starved insulin rapamycin rep 3


title: KO serum starved rep 2

value: serum starved


title: KO serum starved rep 1


title: WT serum starved insulin rapamycin rep 4

value: wild type


title: KO serum starved rep 4


title: KO serum starved insulin rep 2


title: KO serum starved insulin rep 4


title: KO serum starved rep 3


title: WT serum starved insulin rapamycin rep 3


title: WT serum starved insulin rapamycin rep 1


title: WT serum starved rep 4


title: WT serum starved rep 1


title: WT serum starved insulin rapamycin rep 2


title: WT serum starved rep 2


title: WT serum starved insulin rep 3


title: WT serum starved rep 3


title: KO tunicamycin 16 hours rep 4

value: tunicamycin 16 hours


title: WT serum starved insulin rep 2


title: WT serum starved insulin rep 1


title: KO tunicamycin 16 hours rep 1


title: KO tunicamycin 16 hours rep 2


title: KO tunicamycin 16 hours rep 3


title: WT serum starved insulin rep 4


title: KO tunicamycin 8 hours rep 3

value: tunicamycin 8 hours


title: KO tunicamycin 4 hours rep 4

value: tunicamycin 4 hours


title: KO tunicamycin 8 hours rep 1


title: KO tunicamycin 8 hours rep 4


title: KO tunicamycin 4 hours rep 2


title: KO tunicamycin 4 hours rep 1


title: KO Vehicle rep 2

value: vehicle


title: KO Vehicle rep 4


title: KO Vehicle rep 3


title: WT tunicamycin 16 hours rep 4


title: WT tunicamycin 16 hours rep 3


title: KO Vehicle rep 1


title: WT tunicamycin 8 hours rep 4


title: WT tunicamycin 8 hours rep 3


title: WT tunicamycin 16 hours rep 1


title: WT tunicamycin 8 hours rep 2


title: WT tunicamycin 4 hours rep 2


title: KO tunicamycin 4 hours rep 3


title: WT tunicamycin 4 hours rep 1


title: WT Vehicle rep 3


title: WT tunicamycin 4 hours rep 3


title: WT Vehicle rep 1


title: WT tunicamycin 16 hours rep 2


title: WT Vehicle rep 4


title: WT Vehicle rep 2


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H8_ad008

value: ACB

value: male


title: WT tunicamycin 8 hours rep 1


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F3_ad006


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H9_ad001


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H9_ad007


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H8_ad002


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H9_ad004


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H9_ad006


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H9_ad010


title: KO tunicamycin 8 hours rep 2


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H5_ad002


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H4_ad001


title: CEMBA181218_5F_1_CEMBA181218_5F_2_F9_ad002


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H8_ad012


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H7_ad007


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H7_ad010


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H5_ad001


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H6_ad004


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H5_ad006


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H6_ad007


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H5_ad010


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H7_ad002


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H8_ad006


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H7_ad006


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H7_ad012


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H6_ad002


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H8_ad004


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H6_ad012


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H7_ad008


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H7_ad004


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H6_ad001


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H5_ad004


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H6_ad006


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H8_ad007


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H5_ad008


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H4_ad010


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H4_ad007


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H4_ad006


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H6_ad008


title: CEMBA181220_5F_4_CEMBA181220_5F_5_H5_ad007