title: CEMBA190307_5A_1_CEMBA190307_5A_2_A6_ad004


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A6_ad008

status: Public on Oct 11 2020

type: SRA

city: La Jolla

first: Joseph

middle: R

last: Ecker

state: CA

address: 10010 North Torrey Pines Road

department: Genomic Analysis Laboratory

country: USA

institute: HHMI-Salk-Institute

library_source: genomic

data_processing:
Library strategy: snmC-seq2
Reads trimed with Cutadapt for adapters and low quality bases (Phred score >= 20)
The resulting files are mapped to in-silico bisulfite converted mm10 reference genome using Bismark.
The raw BAM file will be filtered using samtools to filter reads by MAPQ > 10 and use Picard to remove PCR duplicates
Tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls will be generated with in-house developing package using the filtered BAM files
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls. Columns are: 1. Chromosome, 2. Position, 3. Strand, 4. Cytosin Context, 5. methylated base call, 6. total mapped base call, 7. not used, place holder column

molecule: genomic DNA

organism: Mus musculus

source_name: C57BL/6J Male P56 Mouse Brain

growth_protocol: All mice are C57BL/6J Male, brain dissected in P56

extract_protocol:
the brain of P56 male C57BL/6J mouse will be removed and cut into 600 microns thick coronal sections using a tissue matrix. Then each region will be microdissected from the coronal tissue sections based on identified landmarks and brain atlas coordinates, as defined in Allen brain atlas CCF3 (Avaliable at: http://atlas.brain-map.org). For each dissection region, the tissue from several littermate mice will be combined together into to separate replicate groups. The number of animals in a replicate depends on the size of the tissue. Nuclei preparation will be stained with the fluorescently labeled anti-NeuN body and nucleic acid stain Hoechst 33342.
Library prepared following protocol discribed in Luo, Chongyuan, Angeline Rivkin, Jingtian Zhou, Justin P. Sandoval, Laurie Kurihara, Jacinta Lucero, Rosa Castanon, et al. 2018. “Robust Single-Cell DNA Methylome Profiling with snmC-seq2.” Nature Communications 9 (1): 3824.

tag: brain region

value: ACA,PL,ILA

tag: Sex

value: male

tag: age

tag: strain


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A6_ad007


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A5_ad012


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A5_ad006


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A5_ad004


title: adenoma_51

city: Basel

first: Ravi Kiran Reddy

last: KALATHUR

state: Basel

address: Mattenstrasse 28

department: Departement Biomedizin

country: Switzerland

institute: University of Basel

library_source: transcriptomic

data_processing:
Base calling was done using Illumina software
Sequenced reads were mapped to MM10 version of mouse genome using RNA-STAR using parameters (outFilterMultimapNmax=10 and outFilterType="BySJout")
Counts are obtained using qcount in quasR
Genome_build: mm10
Supplementary_files_format_and_content: txt file and contains counts for each sample

molecule: total RNA

source_name: MMTV-PyMT

growth_protocol: The outgrowth of clonal cell populations has been analysed when the maximum allowed tumour volume comprising all stages (normal, hyperplasia, adenoma, carcinoma, pulmonary metastases) had been reached in colour-induced MMTV-PyMT; R26-CBW; K8-CreERT2 mice.

extract_protocol:
By combining the recently published Geo-seq protocol using SmartSeq2 for laser capture microdissected samples with a recent report for parallel DNA and RNA sequencing from single cells, representative cDNA libraries of laser-captured regions from fixed tumour sections were generated. In brief, 7 µm thick cryosections were mounted onto Menzel Superfrost Plus slides and placed in decreasing and increasing ethanol solutions. Zonal patches of clonal populations of various stages in the primary tumour as well as monochromatic metastases were microdissected by using a Zeiss Laser Capture Microscope (energy: 49, focus: 67, delta-energy: 15, delta-focus: 5; CFP (474/23), GFP (510/20), YFP (535/22) and RFP (620/60)) in Auto LPC mode. Clonal populations of normal mammary glands were pooled to obtain a sufficient sample size. Collected laser capture microdissected samples were first lysed at 37 °C for 30 minutes by using a digestion buffer containing proteinase K (150 mM NaCl, 100 mM Tris pH 7.5, 0.5% Igepal, 0.5 µg/µl proteinase K) to reverse the cross-linking of formalin fixation and for further 30 minutes at 42 °C by using a 4M GuSCN solution (Thermo Fisher). Biotinylated oligo-dT30VN beads were used to discard gDNA in the supernatant and specifically start the reverse-transcriptase reaction and cDNA preamplification on poly-adenylated mRNA (exception to GeoSeq protocol: dNTP mix contained 10mM each of dATP, dCTP, dGTP, dTTP and SmartSeq2 ISPCR oligos were used, 5′-AAGCAGTGGTATCAACGCAGAGT-3′). cDNA quality was assessed by a Qubit Fluorometer with a dsDNA HS assay kit (Thermo Fisher), an Agilent high-sensitivity DNA chip for cDNA size distribution and quantitative real-time PCR to check for the expression of housekeeping genes and the absence of gDNA. Laser capture microdissected samples with best quality were subjected to RNA sequencing.
For library preparation, 500 pg cDNA was amplified using the Nextera XT DNA library preparation kit (Illumina). 12 PCR cycles were carried out, DNA was purified using AMPure XP beads in a 0.8:1 ratio and cDNA was sequenced on a NextSeq 500 platform (Illumina) with a 75-bp single-read mode (Index1:8, Index2: 8).

treatment_protocol: To stochastically express one of the four Confetti reporter fluorescent proteins, female MMTV-PyMT; R26-CBW; K8-CreERT2 mice of five weeks of age were induced intraperitoneally with five mg tamoxifen (Sigma-Aldrich) dissolved in 200 µl sunflower oil (Sigma-Aldrich) containing 10% EtOH (Scharlau).

tag: tumour stage

value: Adenoma

tag: image

value: RFP

tag: tissue

value: Tumor core


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A7_ad004


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A4_ad012


title: carcinoma_06

value: Carcinoma

value: GFP


title: adenoma_48

value: Tumor border


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A5_ad002


title: carcinoma_37


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A4_ad006


title: PK-1_IRX4#28+Tet_exp1

type: RNA

city: Sendai

first: Shinichi

last: Fukushige

address: 2-1 Seiryo-machi, Aoba-ku

department: Department of Diabetes, Metabolism and Endocrinology

country: Japan

institute: Tohoku University Graduate School of Medicine

description: Gene expression in PK-1_IRX4#28 cell line with tetracycline

hyb_protocol: 1.65 ug of Cy3-labelled cRNA (specific activity >9 pmol Cy3/ug cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 55 ul containing 1x Agilent fragmentation buffer and 2x Agilent blocking agent following the manufacturers instructions. On completion of the fragmentation reaction, 55 ul of 2x Agilent hybridization buffer was added to the fragmentation mixture and hybridized to Agilent Whole Human Genome Oligo Microarrays (G4845A) for 17 hours at 65°C in a rotating Agilent hybridization oven.  After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37°C GE Wash buffer 2 (Agilent), then dried immediately by brief centrifugation.

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2565BA) using one color scan setting for 1x44k array slides (Scan Area 61x21.6 mm, Scan resolution 5 um, Dye channel is set to Green and Green PMT is set to 100% and 10%).

data_processing: The scanned images were analyzed with Feature Extraction Software 9.5.1 (Agilent) using default parameters to obtain background subtracted and spatially detrended Processed Signal intensities.  Features flagged in Feature Extraction as Feature Non-uniform outliers were excluded.

organism: Homo sapiens

source_name: PK-1, IRX4#28+Tet, experiment 1

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 1 ug RNA using the One-Color Low RNA Input Linear Amplification kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).  Dye incorporation and cRNA yield were checked with the NanoDrop ND-1000 Spectrophotometer.

growth_protocol: Two cell lines derived from human pancreatic cancer cell lines, PK-1_IRX4#28 and PK-9_IRX4#23, were grown in RPMI1640 medium supplemented with 10% fetal bovine serum.

extract_protocol: The RNAs from PK-1_IRX4#28 and PK-9_IRX4#23 with (4 days treatment) or without tetracycline were prepared using the RNeasy Mini kit (QIAGEN, Valencia, CA) following the manufacturer's recommendations.  RNA was quantified using a NanoDrop-1000 spectrophotometer and quality was monitored with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA).

treatment_protocol: PK-1_IRX4#28 and PK-9_IRX4#23 cells were treated with or without 1 μg/ml tetracycline for 4 days.

tag: cell line

value: pancreas


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A5_ad010


title: PK-9_IRX4#23-Tet_exp1

description: Gene expression in PK-9_IRX4#23 cell line without tetracycline

source_name: PK-9_IRX4#23-Tet, experiment 1


title: adenoma_25

value: YFP


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A4_ad008


title: adenoma_36


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A4_ad001


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A3_ad007


title: PK-9_LHX6#4-Tet_exp1

description: Gene expression in PK-9_LHX6#4 cell line without tetracycline

source_name: PK-9_LHX6#4-Tet, experiment 1

growth_protocol: Two cell lines derived from human pancreatic cancer cell lines, PK-1_LHX6#13 and PK-9_LHX6#4, were grown in RPMI1640 medium supplemented with 10% fetal bovine serum.

extract_protocol: The RNAs from PK-1_LHX6#13 and PK-9_LHX6#4 with (4 days treatment) or without tetracycline were prepared using the RNeasy Mini kit (QIAGEN, Valencia, CA) following the manufacturer's recommendations.  RNA was quantified using a NanoDrop-1000 spectrophotometer and quality was monitored with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA).

treatment_protocol: PK-1 and PK-9 cells that allow tetracycline-regulated LHX6 expression were constructed in two steps using T-REx system (Invitrogen): First, PK-1 and PK-9 cells were seeded on 6-well tissue culture dishes and transfected with 4 ug of pcDNA6/TR plasmid using lipofectamine reagents (Invitrogen) according to the supplier’s recommendations. The cells were selected with RPMI-1640 medium containing 5 ug/ml blasticidin at 48 hr after transfection to obtain Tet repressor-expressing cell lines. Two cell lines, PK-1_TR4 and PK-9_TR4, were selected because transient expression of pcDNA4/TO/myc-His/lacZ (Invitrogen) resulted in the extensive induction of beta-galactosidase activities upon addition of tetracycline. Second, pcDNA4/TO/3xFLAG-LHX6 plasmid was digested with PvuI and was transfected into PK-1_TR4 and PK-9_TR4 cells to give PK-1_LHX6#13 and PK-9_LHX6#4 cells.

tag: cell type

value: pancreatic cancer cell line


title: adenoma_34

value: Not surrounded by tumor


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A3_ad010


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A4_ad002


title: PK-9_LHX6#4+Tet_exp1

description: Gene expression in PK-9_LHX6#4 cell line with tetracycline

source_name: PK-9_LHX6#4+Tet, experiment 1


title: PK-9_IRX4#23+Tet_exp1

description: Gene expression in PK-9_IRX4#23 cell line with tetracycline

source_name: PK-9_IRX4#23+Tet, experiment 1


title: adenoma_50


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A3_ad006


title: adenoma_24


title: adenoma_47


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A4_ad004


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A3_ad001


title: CWR22_Px7

city: Seattle

first: Ilsa

last: Coleman

state: WA

address: 1100 Fairview Ave N, E2-112

department: Human Biology

institute: Fred Hutchinson Cancer Center

data_processing:
Image analysis and base calling were performed using Illumina's Real Time Analysis v1.18.X software, followed by 'demultiplexing' of indexed reads and generation of FASTQ files, using Illumina's bcl2fastq Conversion Software v1.8.4
Sequencing reads were mapped to the hg38 human and mm10 mouse genomes using TopHat v2. Sequences aligning with higher specificity to the mouse genome deriving from potential contamination with mouse tissue were removed from the analysis as previously described (PMID: 24278200.)
Mean and standard deviation of fragment size were calculated with picard-tools v2.18.1
Transcript abundance was determined from the TopHat alignments in R using the Genomic Alignments Bioconductor package using the summarizeOverlaps function with mode=IntersectionStrict, counting reads mapping to the exonic regions of genes.
Supplementary_files_format_and_content: Processed files are tab-delimited text files. Each file contains 7 columns: Entrez Gene ID, gene symbol, gene name, mRNA size, raw fragment count (by gene), FPM (fragments per million reads mapped) and FPKM (fragments per kilobase per million reads mapped).

source_name: CWR22 PDX tumor

growth_protocol: Triple immune‐deficient NSG (i.e. NOD.Cg‐PrkdcScidIl2rgtm1Wji/Szj), adult (>8 week old) male mice obtained from the Sidney Kimmel Comprehensive Cancer Center (SKCCC) Animal Core Facility were used for xenografting. For each line tested, 100 μl of sterile saline containing 2 x 106 cancer cells was mixed at 4˚C with 100 μl of Matrigel obtained from BD Biosciences and then the mixture inoculated subcutaneously in the flank of 5 intact and 5 castrated adult male NSG mice.

extract_protocol:
Total RNA was extracted from flash-frozen xenograft tissue using the Qiagen RNeasy Kit, (Qiagen Inc.), according to the manufacturer's protocol. On-column DNase digestion was performed.
RNA-seq libraries were constructed from 1 ug total RNA using the Illumina TruSeq Stranded mRNA LT Sample Prep Kit according to the manufacturer’s protocol.
Barcoded libraries were pooled and sequenced on the Illumina HiSeq 2500 generating 50 bp paired end reads.

tag: gender

value: prostate cancer

tag: sample type

value: CWR22 PDX tumor


title: LN95_214

source_name: LNCaP-95 PDX tumor

value: LNCaP-95 PDX tumor


title: CWR-H_65

source_name: CWR22-RH PDX tumor

value: CWR22-RH PDX tumor


title: CWR-H_563


title: hyperplasia_46

value: Hyperplasia


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A2_ad001

value: ACA,PL,ILA


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A3_ad008

value: male


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A2_ad012


title: PK-1_IRX4#28-Tet_exp1

description: Gene expression in PK-1_IRX4#28 cell line without tetracycline

source_name: PK-1, IRX4#28-Tet, experiment 1


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A3_ad012


title: SkCaPcast_665c_v2

source_name: SkCaP-1R PDX tumor

value: SkCaP-1R PDX tumor


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A2_ad006


title: PK-1_LHX6#13-Tet_exp1

description: Gene expression in PK-1_LHX6#13 cell line without tetracycline

source_name: PK-1, LHX6#13-Tet, experiment 1


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A2_ad007


title: hyperplasia_33

value: RFP


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A2_ad010


title: hyperplasia_22

value: Tumor core


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A2_ad002


title: CWR22_Px2


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A2_ad008


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A3_ad004


title: hyperplasia_44


title: normal_30

value: Normal

value: Pool

value: Collected from different places


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A12_ad006


title: SkCaPcast_448c


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A12_ad010


title: hyperplasia_21

value: GFP


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A11_ad012


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A11_ad008


title: SkCaP_71R

source_name: SkCaP-1 PDX tumor

value: SkCaP-1 PDX tumor


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A11_ad007


title: SkCap_479


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A12_ad004


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A12_ad008


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A12_ad007


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A11_ad010


title: normal_18


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A10_ad012


title: PK-1_LHX6#13+Tet_exp1

description: Gene expression in PK-1_LHX6#13 cell line with tetracycline

source_name: PK-1, LHX6#13+Tet, experiment 1

value: pancreatic cancer cell line

value: pancreas


title: LVCaP-2cast_450c

source_name: LvCaP-2R PDX tumor

value: prostate cancer

value: LvCaP-2R PDX tumor


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A11_ad006


title: LVCaP-2_485

source_name: LvCaP-2 PDX tumor

value: LvCaP-2 PDX tumor


title: HK1 cells, si-E2F1_3

city: Changsha

first: Jian

last: Ma

state: Hunan

address: 110 Xiangya Road

department: Cancer Research Institute

country: China

institute: Central South University

description: Expression data for human nasopharyngeal carcinoma cell line HK1 transfected with siRNA targeting E2F1 to cells for 48 hours.

data_processing:
Raw data (raw reads) were processed using Trimmomatic. The reads containing ploy-N and the low quality reads were removed to obtain the clean reads. Then the clean reads were mapped to reference human genome using Tophat.
FPKM value of each gene was calculated using Hisat2, and the read counts of each gene were obtained by htseq-count. DEGs were identified using the DESeq functions estimate Size Factors and nbinomTest. P value < 0.05 was set as the threshold for significantly differential expression. Hierarchical cluster analysis of DEGs was performed to explore genes expression pattern. GO enrichment and KEGG pathway enrichment analysis of DEGs were respectively performed using R based on the hypergeometric distribution.
Genome_build: human genome GRCh38
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each samples

source_name: human nasopharyngeal carcinoma

growth_protocol: The human nasopharyngeal carcinoma cell line HK1 were cultured in both DMEM medium supplemented with 10% fetal bovine serum, 100 units/m of penicillin and streptomycin. Cultures were incubated at 37°C in a humidified incubator at 5% CO2.

extract_protocol:
mirVana miRNA ISOlation Kit (Ambion#1561) extraction of RNA was performed according to the manufacturer's instructions.
RNA libraries were prepared for sequencing using standard Illumina protocols.

treatment_protocol: Cells were grown in DMEM medium (with 10% serum), and was transfected with a control non-targeting siRNA to cells or transfected with siRNA targeting E2F1 (or E2F3) for 48 hours.

value: nasopharyngeal carcinoma cell line HK1

tag: transfection

value: E2F1 siRNA(100nM)


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A10_ad010

source_name: C57BL/6J Male P56 Mouse Brain

value: ACA,PL,ILA


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A10_ad008

value: male


title: HK1 cells, si-E2F3_2

description: Expression data for human nasopharyngeal carcinoma cell line HK1 transfected with siRNA targeting E2F3 to cells for 48 hours.

value: E2F3 siRNA(100nM)


title: HK1 cells, si-E2F1_2


title: normal_28

source_name: MMTV-PyMT


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A10_ad007


title: HK1 cells, si-E2F3_3


title: HK1 cells, si-E2F3_1


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A1_ad012


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A10_ad004


title: LVCaP-2cast_518R


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A11_ad001


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A1_ad001


title: HK1 cells, si-E2F1_1


title: HK1 cells, Control_3

description: Expression data for human nasopharyngeal carcinoma cell line HK1 transfected with a control non-targeting siRNA to cells for 48 hours.

value: control siRNA(100nM)


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A10_ad001


title: LVCaP-2_413


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A1_ad006


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A1_ad004


title: HK1 cells, Control_2


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A1_ad008


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A10_ad002


title: HK1 cells, Control_1


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A1_ad007


title: mouse recurrent breast cancer cells 48316-2

status: Public on Oct 10 2020

city: Durham

first: Jen-Tsan

last: Chi

state: NC

address: 101 Science Dr., 2133 CIEMAS Box 3382 DUMC

department: Center for Genomic and Computational Biology

institute: Duke University

hyb_protocol: cDNA was amplified using Ambion MessageAmp™ Premier RNA Amplification Kit (Life Technologies) from 200ng total RNA, hybridized to GeneChip mouse 430A 2.0 arrays in Affymetrix  GeneChip® hybridization oven 645, washed in Affymetrix GeneChip®  Fluidics Station 450

scan_protocol: GeneChips were scanned with Affymetrix GeneChip® Scanner 7G.

data_processing: The data were analyzed with Expression Console and normalized by the RMA (Robust Multi-Array) algorithm. We compared the gene expression level of recurrent breast cancer cells to the average of gene expression level in primary breast cancer cells by a zero transformation process.

label: biotin

source_name: Her2 driven murine model of MTB/TAN tumor and after the recurrence (recurrent tumors).

label_protocol: Affymetrix

growth_protocol: Dox-inducible Her2 driven murine model of MTB/TAN cells were grow in DMEM media with 4.5g/L glucose and 4mM glutamine (11995-DMEM, ThermoFisher Scientific) and supplement with 10% heat-inactivated fetal bovine serum (Hyclone #SH30070.03HI) in humidified incubator, 37°C with 5% CO2

extract_protocol: Total RNA was extracted using RNeasy Mini Kit (Qiagen, #74104) according to the manufacturer's instructions.

treatment_protocol: Primary and recurrent cells were grown as adherent. Primary cells were supplemented with 10ng/ml mouse EGF, 5ug/ml bovine insulin, 2ug/ml doxycycline 1uM progesterone and 1ug/ml hydrocortisone.Recurrent cells were supplemented with 10ng/ml mouse EGF and 5ug/ml bovine insulin.

value: breast cancer cell

value: MTB/TAN


title: mouse primary breast cancer cells 54074-2

source_name: Her2 driven murine model of MTB/TAN tumor before the oncogenic withdrawal


title: CEMBA190307_5A_1_CEMBA190307_5A_2_A1_ad002


title: mouse recurrent breast cancer cells 42929-1


title: mouse recurrent breast cancer cells 42929-2


title: mouse primary breast cancer cells 99142-1


title: cancer 3

city: Shenyang

first: Ang

last: Wang

address: North Nanjing Street 155#, Heping District

department: Tumor Etiology and Screening Department of Cancer Institute and General Surgery

institute: First Hospital of China Medical University

hyb_protocol: standard Agilent protocol

scan_protocol: standard Agilent protocol

data_processing: standard Agilent protocol

source_name: stomach

label_protocol: standard Agilent protocol

extract_protocol: none provided by the submitter

tag: condition

value: gastic cancer


title: mouse recurrent breast cancer cells 48316-1


title: mouse primary breast cancer cells 99142-2


title: control 3

value: paracancerous


title: mouse primary breast cancer cells 54074-1


title: cancer 1


title: control 2


title: cancer 2


title: control 1


title: E13.5 R1_6

city: Helsinki

first: Kaia

last: Achim

address: Viikinkaari 9

department: Faculty of Biological and Environmental Sciences

country: Finland

institute: University of Helsinki

description: 5000 cells/sample

data_processing:
The 10xGenomics data processing, genome alignment and gene expression scoring were performed using recommended 10x Genomics Cell Ranger v3.0.1 pipelines.
Genome_build: UCSC mm10
Supplementary_files_format_and_content: Standard CellRanger features table is provided for each sample

source_name: Rhombomere 1 cells

growth_protocol: The tissues and cells were extracted from freshly dissected mouse embryos. All the animal experiments  were approved by the Laboratory Animal Center, University of  Helsinki, and the National Animal Experiment Board in Finland.

extract_protocol:
Ventral r1 was dissected in the 5% FBS (fetal bovine serum; Millipore, Cat#ES-009-B) in L-15 (Gibco, Cat#11415-049). The ventral r1 was separated from the brain by using visible landmarks (such as the constriction of midbrain-hindbrain boundary).  The pieces were washed 3 times with cold 500ul 1xPBS (Lonza, Cat#BE17-516Q) and dissociated using the Papain Dissociation System (Worthington, Cat#LK003150) according to the manufacturer's protocols.
The dissociated cells were collected on 10x Genomics Chromium Single Cell 3’RNAseq platform. The collection rate was 5000 cells/sample and the cDNA synthesis was done using the Chromium™ Single Cell 3' Reagent version 3 chemistry.
The 10XGenomics E12.5 and E13.5  cDNA libraries were sequenced on Illumina NovaSeq 6000 system using read lengths: 28bp (Read 1), 8bp (i7 Index), 0 bp (i5 Index) and 89bp (Read 2). Read quality was assessed by running FASTQC (version 0.10.1)

treatment_protocol: Mice, their tissues and cells were untreated

tag: Stage

value: brain

value: Rhombomere 1

value: Female

tag: genotype

value: wildtype


title: E13.5 R1_7

description: 5000 cells/sample


title: E13.5 R1_12

description: 5000 cells/sample


title: E12.5 R1_5M

description: 5000 cells/sample

value: Male


title: E12.5 R1_7F

description: 5000 cells/sample


title: E12.5 R1_1F

description: 5000 cells/sample


title: HiC_Neu_A23fast15min_rep2

first: Cornelis

last: Murre

address: 9500 Gilman Drive

department: Molecular Biology

institute: UCSD

description: genomic interactions

data_processing:
HiC analysis. HiC reads were processed using HiC-Pro analysis pipeline (Servant et al., 2015). In brief, reads were aligned to mm9 with Bowtie2 with 'very sensitive' mode and reads with mapping quality (MAPQ) > 1 were kept for downstream analysis. Hi-C statistics was summarized (Wingett et al. 2015) (Supplemental Table S1). After stringent data filtering, including removal of PCR duplicates, self-ligation, restriction ends, continuous genomic fragments and re-ligation events, valid contacts file was converted to HIC files using the hicpro2juicebox.sh script. The balanced and normalized contact matrix was visualized by Juicebox (Durand et al., 2016b). PCA analysis by HOMER, applied to the normalized interaction matrix, and PC1 values for each 25-kb bin with positive and negative values, corresponding to A and B compartments, respectively. Genomic regions that displayed a continuum of either positive or negative PC1 values were defined as PC1 domains (PDs). PDs with minimum size of 100kb were identified by findHiCCompartments.pl using default settings. We consider the absolute difference in PC1 value (> 0.4) and the PC1 value change from positive to negative or vice versa to identify PDs that switch compartments.
ChIP-Seq and ATAC-Seq analysis. Reads were aligned to mm9 with Bowtie2 and reads non-uniquely mapped were discarded. Data were analyzed with HOMER. Tag directory was made by makeTagDirectory under the default setting, using option -tbp 1 -fragLength 150. Genome browser visualizing files were made by makeUCSCfile under the default setting, using option -fragLegth 150, -strand both. Bigwig files was created from bedgraph using UCSC utility bedGraphToBigWig. Meta-gene profile was made by makeMetaGeneProfile.pl under the default setting, using option -fraglength 150, -pc 1, -gbin 100 (small genes less than 3kb were excluded).  Average enrichment plot was made by annotatePeaks.pl under the default setting, using option -fraglength 150, -pc 1, -hist 100. Heatmaps were created by Deeptools package in 'reference-Point' mode, using option -bin size 100 -missingDataAsZero -skipZeros. ChIP-Seq peaks were identified by findPeaks in 'factor' mode under the default setting against the input directory, using option -fraglength 150, -size 200. Peaks from separate experiments were considered co-bound if their peak centers were located within 100_bp of each other. Peaks were merged by mergePeaks.pl. Differential peaks were identified by getDifferentialPeaks under the default setting, using option -size 200. Genomic annotations of peaks were computed with annotatePeaks.pl under the default setting. To identify motifs enriched in peak regions over the background, HOMER's motif analysis (findMotifsGenome.pl) including known default motifs and de novo motifs was used with option -mis 0 -len 10,12 -size 200 -mask -p 12 -cache 50000. The background sequences used for motif analysis either from random genome sequences of the same size and normalized GC content or from peaks in comparing condition were indicated in the figure legends. Scatterplots were used for direct comparison of two conditions, either the gene RPKM or normalized tag counts were used for ChIP-/ATAC-Seq respectively.
GRO-Seq analysis. Reads were trimmed 20-bp off the 3' end of the sequence to improve mappability. Reads were aligned to mm9 with Bowtie2 (Langmead and Salzberg, 2012) and reads non-uniquely mapped were discarded. Data were analyzed with HOMER (Heinz et al., 2010). Tag directory was made by makeTagDirectory under the default setting, using option -tbp 3 -fragLength 150, in order to effectively remove the super spikes but still allow genes with high RPKM to "express themselves" in the following analysis. Sequencing-depth normalized bedGraph files for visualization in the UCSC Genome Browser were made by makeUCSCfile under the default setting, using option -norm 1e7, -fragLegth 150, -strand + or -strand -, respectively. Strand-specific bigwig files was created from bedgraph using utility bedGraphToBigWig. The RefFlat gene expression values were quantified by analyzeRepeats under the default setting, using option -condenseGenes -count genes -rpkm -strand separate. Genes with RPKM value less than 0.5 in all conditions were defined as not expressed (8733 genes were expressed). Functional enrichment calculations were performed using PANTHER web portal (http://www.pantherdb.org) applying 'Overrepresentation Test' using the Fisher's exact test and FDR correction method. Meta-gene profile was made by makeMetaGeneProfile.pl under the default setting, using option -fraglength 150, -pc 3, -gbin 100. Average distribution histogram was made by annotatePeaks.pl under the default setting, using option -fraglength 150, -pc 3, -hist 100. Heatmaps were created by Deeptools package in scale-region mode, -bin size 100.
Genome_build: mm9
Supplementary_files_format_and_content: Processed files include BED files (ChIP-Seq peak file, Hi-C PC1 domain positions), RPKM CSV files (GRO-Seq expression data), Bedgraph and Bigwig (ChIP-Seq, GRO-Seq and ATAC-Seq tracks, principle component values along the genome for combined Hi-C data), and tab-delimited txt files, including HIC files (filtered read pairs from Hi-C data processed using HiC-Pro)

source_name: in-vitro differentiated neutrophils

growth_protocol: GM-CSF-dependent ECOMG cells were grown in RPMI 1640 with 10% FBS and penicillin-streptomycin-glutamine, by the addition of 1:100 conditioned media (about 10 ng/mL GM-CSF) isolated from a B16 melanoma cell line stably transfected with a murine GM-CSF construct. b-estradiol where applicable, was added to the medium at a final concentration of 1 mM from a 10,000 × stock in 100% ethanol. Differentiation of ECOMG cells into granulocytes was induced by withdrawal β-estradiol for 5 days. Adult C57BL/6 mice were purchased from Jackson Laboratories and maintained in a specific pathogen-free facility at the University of California, San Diego. Mice were used between 8-12 weeks of age. Both male and female mice were used for study. Primary neutrophils were isolated from bone marrow as described (Zhu et. al. 2017). Primary B and T cells from spleens were isolated using negative-selection kits, Miltenyi Biotec 130-090-862 and 130-095-130 on MACS LS columns, respectively.

extract_protocol:
In situ Hi-C was performed using the MboI restriction enzyme as previously described without modifications  (Rao SSP, et al. 2014. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell 159: 1665-1680).
Hi-C libraries were prepared with the NEBNext primer set and were selected by size by 6% PAGE and sequenced for 100 cycles on Illumina HiSeq 4000 or 50 cycles on Illumina NovaSeq.

treatment_protocol: In vitro differentiated neutrophils from ECOMG cells were used as a model system to study nuclear architecture in response to calcium influx in neutrophils. ECOMG cells were cultured and differentiated as described (Zhu et. al. 2017). For inhibitors, neutrophils were treated with 10uM TRP or 100uM DRB for 30min, or 2uM FK506 for 2h before activation. Primary B cells were treated with 2uM FK506 for 2h before activation. Inhibitors were kept in culture during activation time course. Acute degradation was induced by treating the cells with a final concentration of 500 nM dTAG-13 molecule Tocris). dTAG-13 was kept in culture during activation time course. All the time series experiments were performed by inducing protein degradation at the beginning of the time course and harvest the samples at the different time points. RPMI-1640 contains 0.42mM calcium. Additional CaCl2 was supplied to the medium during activation to a final concentration of 1mM. Neutrophils were activated either in fast activation condition (20uM A23187 for 15min), or in slow activation condition (5uM A23187 for 4h). These two activation conditions were used throughout the manuscript unless otherwise mentioned. The time series activation experiments were performed by activation neutrophils at the beginning of the time course and harvest the samples at the different time points.

value: human E2A_ER_Pbx1b, wild type

value: ECOMG derived neutrophils

tag: treatment

value: fast_treated with 20uM A23187 for 15min

tag: chip antibody


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H9_ad004

tag: brain region

value: DG


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H9_ad001

tag: Sex


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H9_ad006

tag: age


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H9_ad012

tag: strain


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H9_ad010


title: Mammary gland cow Ivoire_Restriction

city: St Genès-Champanelle

first: Christine

last: LEROUX

address: Route de Theix

country: France

institute: INRAE

description:
Ivoire REST
Gene expression d6 of restrition

hyb_protocol: After purification (Qiagen RNeasy Mini Kit), 1,65 µg of Cy3 labeled cRNA were hybridized onto G2519F-023647 Bovine (V2) Gene Expression Microarray, 4x44K (Agilent, USA) with hybridization buffer (Agilent Gene Expression Hybridization Kit) according to the manufacturer’s instructions. After 17h of hybridization, slides were washed with the Gene Expression Wash Pack.

scan_protocol: Microarrays were scanned  using the Agilent Microarray Scanner G2505 version B  (Agilent Technologies, Inc. Santa Clara, CA, USA).

data_processing: The resulting TIFF images (Tagged Image File Format) were processed using Feature Extraction software Version 11. Microarrays were analyzed to determine differential gene expression (DEG) at the mRNA level using GeneSpring software, and data were normalized with 75th percentile shift followed by t-tests moderated with the Benjamini-Hochberg (FDR) correction, Significance was considered at Padj < 0.10.

organism: Bos taurus

source_name: Mammary gland d6 of restriction

label_protocol: 50 ng of total RNA extracted were amplified and fluorescently labelled to produce Cy3 cRNA using the Low Input Quick Amp Labeling one color Kit (Agilent, USA) in the presence of spike-in one color control.

extract_protocol: Total RNA was extracted from approximately 50 mg of MG biopsies using the miRVana kit (Thermo Fisher Scientific, USA). The concentration and quality of the RNAs were estimated by spectrophotometry Nanodrop TH (ND-1000, NanoDrop Technologies LLC, Wilmington, DE, USA) and using the Bioanalyzer 2100 (Agilent Technologies Inc., Santa Clara, CA, USA), respectively.

treatment_protocol: During the control period (CONT) before restriction, all cows were allowed ad libitum intake of a lactation diet. During the restriction period (REST), feed allowance was reduced to meet 50% of NEL requirements calculated from body weight, feed intake and milk production and composition recorded before restriction. Mammary gland (MG) samples were collected by biopsies on day 0 and day 6 relative to initiation of feed restriction. Mammary biopsies were performed after the selection of the biopsy site at a midpoint on a rear quarter. Approximately 600–650 mg of tissue was collected, rinsed in sterile 0.9% saline solution, snap-frozen in liquid nitrogen, and stored at −80 °C until RNA extraction.

tag: breed

value: Holstein cow

tag: animal id

value: Ivoire

tag: diet

value: REST

value: Mammary gland biopsy


title: Mammary gland cow Nuisette_Control

description:
Nuisette CONT
Gene expression before restriction

source_name: Mammary gland before restriction

value: Nuisette

value: CONT

tag: tissue


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H9_ad002

value: male


title: E12.5 R1_4M

description: 5000 cells/sample


title: Mammary gland cow Ivoire_Control

description:
Ivoire CONT
Gene expression before restriction


title: Mammary gland cow Jurassienne_Restriction

description:
Jurassienne REST
Gene expression d6 of restrition

value: Jurassienne


title: Mammary gland cow Mangue_Restriction

description:
Mangue REST
Gene expression d6 of restrition

value: Mangue


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H8_ad004


title: Mammary gland cow Nouvelle_Control

description:
Nouvelle CONT
Gene expression before restriction

value: Nouvelle


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H9_ad007


title: Mammary gland cow Nouvelle_Restriction

description:
Nouvelle REST
Gene expression d6 of restrition


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H9_ad008


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H8_ad008


title: Mammary gland cow Jurassienne_Control

description:
Jurassienne CONT
Gene expression before restriction


title: Mammary gland cow Malaisie_Restriction

description:
Malaisie REST
Gene expression d6 of restrition

value: Malaisie


title: Mammary gland cow Mangue_Control

description:
Mangue CONT
Gene expression before restriction


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H8_ad002


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H7_ad012


title: Mammary gland cow Malaisie_Control

description:
Malaisie CONT
Gene expression before restriction


title: Mammary gland cow Nuisette_Restriction

description:
Nuisette REST
Gene expression d6 of restrition


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H8_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H7_ad008


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H7_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H7_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H8_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H6_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H6_ad004


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H7_ad004


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H6_ad008


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H6_ad002


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H5_ad001


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H5_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H6_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H4_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H5_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H5_ad004


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H7_ad001


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H5_ad002


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H4_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H2_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H2_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H4_ad002


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H6_ad001


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H2_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H4_ad008


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H4_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H5_ad008


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H2_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H4_ad001


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H2_ad004


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H2_ad008


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H4_ad004


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H7_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H2_ad002


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H6_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H12_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H12_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H12_ad008


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H12_ad002


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H3_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H12_ad004


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H12_ad001


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H12_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H11_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H11_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H11_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H11_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H11_ad001


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H10_ad008


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H1_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H10_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H10_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H10_ad004


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H1_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H10_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H10_ad001


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H10_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H1_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H1_ad002


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G9_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G9_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G9_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G9_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G9_ad001


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G9_ad002


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G9_ad004


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H12_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G9_ad008


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G8_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_H1_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G8_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G8_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G8_ad004


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G7_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G8_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G7_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G8_ad002


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G7_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G8_ad001


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G7_ad008


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G7_ad001


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G7_ad004


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G6_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G7_ad002


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G6_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G6_ad008


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G6_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G6_ad002


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G6_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G6_ad004


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G6_ad001


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G5_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G5_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G5_ad008


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G5_ad004


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G5_ad002


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G5_ad001


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G7_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G4_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G4_ad008


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G4_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G4_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G4_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G3_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G3_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G3_ad008


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G4_ad004


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G4_ad002


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G2_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G2_ad004


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G4_ad001


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G3_ad004


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G3_ad001


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G2_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G3_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G2_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G12_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G12_ad002


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G12_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G12_ad008


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G2_ad001


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G12_ad001


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G12_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G12_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G12_ad004


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G11_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G11_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G11_ad008


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G11_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G11_ad002


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G11_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G10_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G11_ad004


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G10_ad008


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G10_ad006


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G10_ad002


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G10_ad007


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G1_ad012


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G10_ad010


title: CEMBA190305_11F_3_CEMBA190305_11F_4_G1_ad008


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title: CEMBA190305_11F_1_CEMBA190305_11F_2_C5_ad004


title: CEMBA190305_11F_1_CEMBA190305_11F_2_C12_ad008


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