title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E5_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E5_ad007

status: Public on Nov 23 2020

type: SRA

city: La Jolla

first: Joseph

middle: R

last: Ecker

state: CA

address: 10010 North Torrey Pines Road

department: Genomic Analysis Laboratory

country: USA

institute: HHMI-Salk-Institute

library_source: genomic

data_processing:
Reads trimed with Cutadapt for adapters and low quality bases (Phred score >= 20)
The resulting files are mapped to in-silico bisulfite converted mm10 INTACT reference genome using Bismark.
The raw BAM file will be filtered using samtools to filter reads by MAPQ > 10 and use Picard to remove PCR duplicates
Tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls will be generated with in-house developing package using the filtered BAM files
Genome_build: mm10 INTACT
Supplementary_files_format_and_content: tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls. Columns are: 1. Chromosome, 2. Position, 3. Strand, 4. Cytosin Context, 5. methylated base call, 6. total mapped base call, 7. not used, place holder column

molecule: genomic DNA

organism: Mus musculus

source_name: C57BL/6J P56 Mouse Brain

growth_protocol: All experimental procedures using live animals were approved by the Salk Institute Animal Care and Use Committee. The knock-in mouse line, R26R-CAG-loxp-stop-loxp-Sun1-sfGFP-Myc (INTACT) was used for most experiments4 and they were maintained on a C57BL/6J background. 42-49 day old adult male and female INTACT mice were used for the retrograde labeling experiment.

extract_protocol:
Approximately two weeks after the AAVretro injection, brains were extracted from the 56-63 day old INTACT mice, immediately submerged in ice-cold slicing buffer (2.5mM KCl, 0.5mM CaCl2, 7mM MgCl2, 1.25mM NaH2PO4, 110mM sucrose, 10mM glucose and 25mM NaHCO3) that was bubbled with carbogen, and sliced into 0.6 mm coronal sections starting from the frontal pole. From each AAVretro-injected brain, the slices were kept in the ice-cold dissection buffer from which selected brain regions (Supplementary Table 1) were manually dissected under a fluorescent dissecting microscope (Olympus SZX16), following the Allen Mouse Common Coordinate Framework (CCF), Reference Atlas, Version 3 (2015) (Extended Data Fig. 1). The dissected brain tissues were transferred to prelabeled microcentrifuge tubes, immediately frozen in dry ice, and subsequently stored at -80oC.   For each dissected brain region, samples from 2 males and 2 females were pooled separately as biological replicates for nuclei preparation. The 2-mL glass tissue dounce homogenizer and pestles (Sigma-Aldrich D8938-1SET) were pre-chilled on ice. Nuclei were prepared using a modified protocol as reported by Lacar et al., 201622. In summary, the frozen brain tissues were transferred to the dounce homogenizer with 1 mL ice-cold NIM buffer (0.25M sucrose, 25mM KCl, 5mM MgCl2, 10mM Tris-HCl (pH7.4), 1mM DTT (Sigma 646563), 10μl of protease inhibitor (Sigma P8340)), with 0.1% Triton X-100 and 5μM Hoechst 33342 (Invitrogen H3570), and gently homogenized on ice with the pestle 10-15 times. The homogenate was transferred to pre-chilled microcentrifuge tubes and centrifuged at 1000 rcf for 8 min at 4oC to pellet the nuclei. The pellet was resuspended in 1 mL ice-cold NIM buffer, and again centrifuged at 1000 rcf for 8 min at 4oC. The pellet was then resuspended in 450 μL of ice-cold NSB buffer (0.25M sucrose, 5mM MgCl2, 10mM Tris-HCl (pH7.4), 1mM DTT, 9ul of Protease inhibitor), and filtered through 40μM cell strainer. The filtered nuclei suspension was incubated on ice for at least 30 minutes with 50μl of nuclease-free BSA for at least 10 minutes, then incubated with GFP antibody, Alexa Fluor 488 (Invitrogen, A-21311) and anti-NeuN antibody (EMD Millipore MAB377) conjugated with Alexa Fluor 647 (Invitrogen A20173). GFP+/NeuN+ single nuclei were isolated using fluorescence-activated nuclei sorting (FANS) on a BD Influx sorter with 100μm nozzle, and sorted into 384-well plates preloaded with 2μl of digestion buffer for snmC-seq215 (20 mL digestion buffer consists of 10 mL M-digestion buffer (2×, Zymo D5021-9), 1 ml Proteinase K (20 mg, Zymo D3001-2-20), 9 mL water, and 10 µL unmethylated lambda DNA (100 pg/µL, Promega, D1521)). The collected plates were incubated at 50oC for 20 minutes then stored at -20 oC.
The bisulfite conversion and library preparation were performed following the detailed snmC-seq2 protocol as previously described (Luo, C. et al., Nat. Commun. 2018, 9(1):3824.). The snmC-Seq2 libraries were sequenced on Illumina Novaseq 6000 using the S4 flow cell 2 x 150 bp mode.

treatment_protocol: To label neurons projecting to regions of interest, injections of rAAV2-retro-Cre (produced by Salk Vector Core or Vigene, 2x10^12 to 1x10^13 viral genomes/ml, produced with capsid from Addgene plasmid #81070 packaging pAAV-EF1a-Cre from Addgene plasmid #55636) were made into both hemispheres of the INTACT mice. Animals were anesthetized with either ketamine/xylazine or isoflurane, placed in a stereotaxic frame, and 0.1 to 0.5 microliters of AAV was injected by pressure into stereotaxic coordinates corresponding to the desired projection target.

tag: strain

tag: age

tag: tissue

value: brain

tag: source

value: AUD

tag: target

value: TH

tag: gender

value: male


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E5_ad006

value: SSp


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E5_ad002

value: female


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E5_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E4_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E4_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E4_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E4_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E5_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E4_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E4_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E4_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E3_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E3_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E3_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E3_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E2_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E2_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E3_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E2_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E2_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E2_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E2_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E2_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E3_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E3_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E2_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E1_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E1_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E1_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E1_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E1_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E1_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E12_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E1_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E12_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E12_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E3_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E12_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E12_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E12_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E11_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E11_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E11_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E11_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E11_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E11_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E11_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E11_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E10_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E10_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E10_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D9_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E10_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D9_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D9_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D9_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D9_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D9_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D9_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E10_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D8_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D7_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D8_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D7_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D7_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D8_ad004


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title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E10_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_E10_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D6_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D7_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D6_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D6_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D6_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D6_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D5_ad010


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title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D5_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D5_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D7_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D4_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D4_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D4_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D7_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D4_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D4_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D4_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D3_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D3_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D3_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D6_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D3_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D2_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D5_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D3_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D3_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D2_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D5_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D2_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D2_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D1_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D1_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D1_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D4_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D1_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D2_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D3_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D1_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D12_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D12_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D12_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D12_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D1_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D12_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D3_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D12_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D12_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D11_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D11_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D11_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D11_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D11_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D1_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D10_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D2_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D10_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D10_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D10_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D10_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C9_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C9_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C9_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C9_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C9_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C9_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C9_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D11_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C9_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C8_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C8_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C8_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D10_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C8_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C7_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C8_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C7_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C7_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_D10_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C7_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C7_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C7_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C7_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C6_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C6_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C6_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C6_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C6_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C5_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C8_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C6_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C5_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C5_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C5_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C5_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C5_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C5_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C4_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C4_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C4_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C4_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C4_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C4_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C3_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C4_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C3_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C3_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C2_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C6_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C2_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C2_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C2_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C2_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C2_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C4_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C3_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C1_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C3_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C2_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C1_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C1_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C2_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C12_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C1_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C12_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C12_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C12_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C12_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C1_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C1_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C11_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C12_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C12_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C11_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C11_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C11_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C1_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C11_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C10_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C10_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C10_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C10_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C10_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C1_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_C10_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B9_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B9_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B9_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B9_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B9_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B9_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B8_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B7_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B8_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B7_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B7_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B7_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B8_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B7_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B6_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B6_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B6_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B7_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B7_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B6_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B6_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B6_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B6_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B6_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B5_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B5_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B5_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B5_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B8_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B5_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B5_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B8_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B5_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B4_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B4_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B4_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B4_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B4_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B2_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B2_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B1_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B2_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B4_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B4_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B3_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B3_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B2_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B4_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B2_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B3_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B1_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B2_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B3_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B3_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B2_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B1_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B1_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B1_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B1_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B1_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B3_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B1_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B12_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B12_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B12_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B2_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B12_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B12_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B12_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B12_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B11_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B11_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B11_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B11_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B10_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B11_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B10_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B10_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B11_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B11_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B10_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B11_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B10_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B10_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A8_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A9_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A9_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A9_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A8_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A8_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A8_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A8_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A8_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A8_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_B10_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A7_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A8_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A7_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A7_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A7_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A7_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A6_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A6_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A6_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A6_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A6_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A7_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A5_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A5_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A5_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A6_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A4_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A5_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A5_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A6_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A4_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A4_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A5_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A4_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A4_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A3_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A3_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A3_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A3_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A3_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A6_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A3_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A3_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A3_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A7_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A2_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A2_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A2_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A2_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A2_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A2_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A4_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A2_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A1_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A1_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A1_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A1_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A12_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A12_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A12_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A1_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A1_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A1_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A12_ad007


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A11_ad012


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A12_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A11_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A12_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A11_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A11_ad006


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A11_ad004


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A10_ad010


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A11_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A10_ad008


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A10_ad007


title: RNAseq_4wk_cortex_m6AIP_rep2

city: Atlanta

first: Andrew

last: Shafik

address: 615 Michael Street

department: Human Genetics

institute: Emory University

description:
Peaks are calculated by compared the IP sample to the background input. Only one called peaks file is submitted for each brain region, which reports the consensus peaks from both replicates.
m6A_4wk_cortex_called_peaks.xls

library_source: transcriptomic

data_processing:
Reads were aligned to mouse genome (mm9) or human genome (hg38) using Bowtie v2.2.4 and tophat 2.1.1. Mapping parameters were set to local, sensitive and non-deterministic mode.
m6A peaks were identified using MACS2 with parameters:  –nomodel,–extsize 150, -p 5e-2
High-confidence peaks found in both biological replicates were annotated by ChiPSeeker
Differential methylation (DM) in m6A-RIP-seq data was analyzed by MACS2 bdgdiff
BAM files were converted to tiled data files (TDF) for the Integrative Genomics Viewer (IGV) using igvtools.
The genome-wide coverage data were normalized by 1,000,000/total read count for visualization in IGV.
TPM values were calculated by TPMCalculator.
Genome_build: mm9/hg38
Supplementary_files_format_and_content: xls files containing coordinate, gene name information of called m6A peaks. This was achieved using MACS2 callpeak; the input serves as the background.

molecule: total RNA

source_name: Cortex

extract_protocol:
Trizol was used to extract total RNA from all samples.
Total RNA was fragmented to ~100 bp using chemical fragmentation. The input libraries were generated from approximatley 50 ng of poly(A) + mRNA. For the m6A libraries, total RNA was immunoprecipated using m6A antibody. Libraries were then constructed using the Illumina Truseq RNA Library Preparation kit v2, according to the manufacturer's protcol. An Agilent 2100 BioAnalyzer and DNA1000 kit were used to determine the concentration and quality of the final amplified cDNA libraries.

tag: developmental stage

value: 4 week old

value: wild type

tag: m6a antibody

value: Synaptic systems m6A antibody 202003


title: RNAseq_26wk_cortex_m6AIP_rep1

description:
Peaks are calculated by compared the IP sample to the background input. Only one called peaks file is submitted for each brain region, which reports the consensus peaks from both replicates.
m6A_26wk_cortex_called_peaks.xls

value: 26 week old


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A10_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A10_ad004


title: RNAseq_4wk_cortex_m6AIP_rep1


title: smoke_rep4

city: Shanghai

first: Xiang

last: Yu

state: Shanghai

address: 800 DongChuan

country: China

institute: Shanghai Jiao Tong University

description: Mouse with smoke exposure

data_processing:
All reads were aligned to the mouse genome (mm10) using STAR.
HTSeq was used to calculate the raw reads mapping to given genes in strand-specific manner.
Genome_build: mm10
Supplementary_files_format_and_content: txt files, count

molecule: polyA RNA

source_name: Cerebral Microvessel

growth_protocol: Male C57BL/6 mice were purchased from Jackson Laboratories (Bar Harbor, ME) at 7 weeks of age and housed on a 12-hour light cycle with lights on at 0700.

extract_protocol:
RNA isolation was performed using TRIzol reagent (Thermo Fisher Scientific) in accordance with the manufacturer’s instruction, and RNA purity and concentration was determined via NanoDrop 2000 spectrophotometer (Thermo Fisher Scientific). Only samples with a 260/280 wavelength ratio between 1.8 and 2.0 was used in subsequent sequencing steps.
RNA-seq libraries were prepared with single-end
Illumina Hi-Seq2000 80 nt strand-specific

tag: treatment

value: smoke exposure

value: Cerebral Microvessel

tag: replicate


title: smoke_rep2

description: Mouse with smoke exposure


title: air_rep3

description: Mouse with room air exposure

value: room air exposure


title: smoke_rep1

description: Mouse with smoke exposure


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A11_ad002


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A10_ad001


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H9_ad007

value: RSP

value: Pons


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H9_ad008


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H9_ad010


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H9_ad006


title: air_rep2

description: Mouse with room air exposure


title: air_rep4

description: Mouse with room air exposure


title: RNAseq_26wk_cortex_m6AIP_rep2


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H9_ad002


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H8_ad012


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H9_ad001


title: 180531_CEMBA_mm_P56_P63_RS2_Pool25_P1_Pool25_P2_A10_ad006


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H8_ad010


title: Nic_rep2

description: Mouse with Nicotine Electronic cigarette exposure

value: Nicotine Electronic cigarette exposure


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H8_ad008


title: Nic_rep1


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H8_ad002


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H8_ad007


title: smoke_rep3

description: Mouse with smoke exposure


title: Nic-free_rep4

description: Mouse with Nicotine-free Electronic cigarette exposure


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H8_ad001


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H8_ad006


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H7_ad012


title: air_rep1

description: Mouse with room air exposure


title: Nic-free_rep2

value: Nicotine-free Electronic cigarette exposure


title: Room-air_rep2

description: Mouse with room air exposure


title: Room-air_rep3

description: Mouse with room air exposure


title: Room-air_rep4

description: Mouse with room air exposure


title: Nic_rep3


title: Nic-free_rep1


title: Room-air_rep1

description: Mouse with room air exposure


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H7_ad004

value: brain


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H7_ad002


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H7_ad010


title: 5XMTHF_rep2

city: Toronto

first: G. Harvey

last: Anderson

state: ON

address: 1 Kings College Circle

department: Nutritional Sciences

country: Canada

institute: University of Toronto

data_processing:
Adapter trimming and removal of lower quality ends was performed using Trim Galore v. 0.5.0
Trimmed reads were screened for presence of rRNA and mtRNA sequences using FastQ-Screen v.0.10.0.
RSeQC package v.2.6.2 was used to confirm strand specific RNA-Seq library construction and to assess positional read duplication and read distribution across exonic, intronic and intergenic regions.
The quality of trimmed reads was re-assessed with FastQC. STAR aligner v.2.6.0c was used to align the trimmed reads to Rnor_6.0 genome downloaded from Ensembl database version 98.6 using Ensembl gene models.
The STAR alignments were processed to extract raw read counts for genes using htseq-count v.0.6.1p2 (HTSeq)
Two-condition differential gene expression (DEG) was performed with DESeq2 v. 1.26.0s, using R v.3.6.1.  Initial minimal filtering of 10 reads per gene for all samples was applied to the datasets. More strict filtering to increase power is automatically applied via independent filtering on the mean of normalized counts within the DESeq results function.
Genome_build: Rnor_6.0
Supplementary_files_format_and_content: tab-separated values (tsv) files include filtered FPKM values for each sample

organism: Rattus norvegicus

source_name: hypothalmus

extract_protocol:
Whole brains were removed immediately upon termination and the Arcuate nucleus of the hypothalamus was later macrodisected on dry ice using approximate stereotaxic coordinates. RNA was harvested using Trizol reagent. Illumina HiSeq 2500 was performed with polA mRNA selection for the construction of sequencing libraries.
RNA libraries were prepared for sequencing using standard Illumina protocols

value: Wistar

tag: brain region

value: arcuate nucleus

tag: generation

value: mother rat

tag: time of tissue collection

value: upon parturition

tag: dietary intervention

value: 5X- methylfolate (MTHF) intake during pregnancy


title: 5XMTHF_rep4


title: 5XMTHF_rep5


title: 5XMTHF_rep3


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H6_ad010

value: female


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H6_ad008

value: male


title: Nic-free_rep3


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H6_ad006

value: TH


title: 5XFA_rep5

value: 5X- folic acid (FA) intake during pregnancy


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H5_ad012


title: 5XFA_rep4


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H5_ad008


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H7_ad007


title: 5XFA_rep1


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H5_ad007


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H5_ad006


title: 202796590032_R05C01_whole blood Mild Cognitive Impairment

type: genomic

city: Brisbane

first: Marta

middle: Filipa

last: Nabais

state: Queensland

address: 306 Carmody Rd, St. Lucia

department: Institute for Molecular Biosciences

country: Australia

institute: University of Queensland

hyb_protocol: Bisulfite conversions were performed in 96-well plates using the EZ-96 DNA Methylation Kit (Zymo Research, Irvine, CA, USA). Prior to conversion, DNA concentrations were determined by the Take3™ Micro-Volume Plate on the Epoch™ Microplate Spectrophotometer (BioTek Instruments, Inc.) and standardized to include 500 ng. DNA recovery after conversion was quantified using the Take3™ Micro-Volume Plate on the Epoch™ Microplate Spectrophotometer (BioTek Instruments, Inc.). Samples that showed incomplete bisulfite conversion (calculated concentration <25 ng/μl) were not taken forward to the assessment of DNA methylation. Bisulfite converted DNA samples were hybridized to the 8 sample, Illumina Infinium HumanMethylation850 Beadchip (Illumina Inc., San Diego, CA), using Infinium HD Methylation protocol and Tecan robotics.

scan_protocol: HiScan reader, using standard recommended Illumina scanner setting

data_processing:
Illumina GenomeStudio sofwtare and Meffil package
Normalized data: Normalized Average Beta (functional normalization, using Meffil)
Raw data includes Unmethylated and methylated signal intensities

label: Cy3, Cy5

organism: Homo sapiens

source_name: whole blood

label_protocol: Standard Illumina Protocol

growth_protocol: direct ex-vivo analysis

extract_protocol: genomic DNA was extract from whole blood using a standard buffy coat (EDTA) protocol

value: whole blood

value: Male

tag: disease status

value: Mild Cognitive Impairment


title: 202761400005_R08C01_whole blood healthy control

value: healthy control


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H5_ad001

value: RSP


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H5_ad004


title: 202796590004_R06C01_whole blood Alzheimer's disease

value: Alzheimer's disease


title: 202796590008_R05C01_whole blood healthy control


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H4_ad010

value: Pons


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H6_ad004

value: brain


title: 202796590036_R05C01_whole blood Alzheimer's disease


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H4_ad008


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H6_ad002


title: 202761400022_R08C01_whole blood healthy control


title: 5XMTHF_rep1

value: Wistar

value: 5X-methylfolate (MTHF)  intake during pregnancy


title: 202760950123_R05C01_whole blood Alzheimer's disease


title: 202796590008_R02C01_whole blood Alzheimer's disease


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H4_ad002


title: 202796590040_R06C01_whole blood Alzheimer's disease


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H4_ad007


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H3_ad006


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H3_ad007


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H5_ad010


title: 5XFA_rep2

value: arcuate nucleus

value: mother rat


title: 5XFA_rep3

value: upon parturition


title: 202796590043_R05C01_whole blood Mild Cognitive Impairment


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H3_ad002


title: 202796590005_R04C01_whole blood Mild Cognitive Impairment


title: 202764140038_R05C01_whole blood Mild Cognitive Impairment


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H2_ad008


title: 202790040114_R06C01_whole blood Mild Cognitive Impairment


title: 202796590012_R03C01_whole blood healthy control


title: 202790040089_R08C01_whole blood Mild Cognitive Impairment


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H2_ad007


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H2_ad004

value: female


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H2_ad001

value: male


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H1_ad012


title: 202790040040_R02C01_whole blood healthy control

value: Female


title: 202796590026_R06C01_whole blood Mild Cognitive Impairment


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H1_ad008


title: 202796590006_R01C01_whole blood Alzheimer's disease


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H1_ad010


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H1_ad007


title: 202760950008_R06C01_whole blood Mild Cognitive Impairment


title: 202790040054_R06C01_whole blood Alzheimer's disease


title: 202760950055_R06C01_whole blood Mild Cognitive Impairment


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H1_ad004

value: TH


title: 202764140005_R01C01_whole blood healthy control

value: whole blood


title: 202796590037_R03C01_whole blood Mild Cognitive Impairment

value: Male


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H1_ad002


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H1_ad006


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H1_ad001


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H2_ad012


title: 202796590031_R05C01_whole blood healthy control


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H2_ad006


title: 202760950117_R02C01_whole blood Mild Cognitive Impairment

value: Mild Cognitive Impairment


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H12_ad002


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H11_ad012


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H12_ad001


title: 202764140144_R08C01_whole blood healthy control

value: healthy control


title: 202760950113_R03C01_whole blood Mild Cognitive Impairment


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H11_ad008

value: RSP


title: 202796590010_R06C01_whole blood healthy control


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H11_ad007


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H11_ad004


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H11_ad006


title: 202761400022_R05C01_whole blood healthy control


title: 202790040039_R01C01_whole blood healthy control


title: 202796590024_R03C01_whole blood healthy control


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H10_ad008


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H10_ad010


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H11_ad001


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H10_ad012


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H10_ad007


title: 202796590009_R01C01_whole blood healthy control


title: 202761400010_R05C01_whole blood Alzheimer's disease

value: Alzheimer's disease


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H10_ad006


title: 202790040115_R03C01_whole blood healthy control


title: 202796590003_R04C01_whole blood Alzheimer's disease


title: 202790040086_R01C01_whole blood healthy control


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H11_ad010

value: Pons


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H10_ad002

value: brain


title: 202790040058_R02C01_whole blood Alzheimer's disease


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H10_ad001


title: 202796590022_R01C01_whole blood healthy control


title: 202796590030_R06C01_whole blood healthy control


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G9_ad012


title: 202790040053_R06C01_whole blood healthy control


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G9_ad008


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G9_ad010


title: 202796590001_R05C01_whole blood healthy control


title: 202760950130_R02C01_whole blood Mild Cognitive Impairment


title: 202790040004_R06C01_whole blood healthy control


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G9_ad007


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G9_ad004


title: 202790040037_R08C01_whole blood healthy control


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G8_ad010


title: 202790040074_R05C01_whole blood healthy control


title: 202796590043_R02C01_whole blood healthy control


title: 202790040075_R05C01_whole blood Mild Cognitive Impairment


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G8_ad006


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G8_ad004


title: 202796590013_R08C01_whole blood Mild Cognitive Impairment


title: 202790040060_R02C01_whole blood healthy control


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G7_ad012


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G8_ad001


title: 202764140081_R06C01_whole blood Alzheimer's disease


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G7_ad008


title: 202796590024_R05C01_whole blood Mild Cognitive Impairment


title: 202764140088_R05C01_whole blood healthy control


title: 202761400005_R06C01_whole blood Alzheimer's disease


title: 202772890076_R03C01_whole blood Alzheimer's disease


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G7_ad004


title: 202790040115_R02C01_whole blood Mild Cognitive Impairment


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G7_ad001


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G7_ad006


title: 202790040040_R01C01_whole blood Alzheimer's disease


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_H12_ad010


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G6_ad012


title: 202790040043_R05C01_whole blood Mild Cognitive Impairment


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G6_ad010


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G6_ad008


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G6_ad007


title: 202764140081_R05C01_whole blood healthy control


title: 202790040068_R02C01_whole blood healthy control


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G6_ad006


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G6_ad004


title: 202790040163_R07C01_whole blood Alzheimer's disease


title: 202790040113_R07C01_whole blood Alzheimer's disease


title: 202790040131_R02C01_whole blood Mild Cognitive Impairment


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G5_ad010


title: 202796590023_R01C01_whole blood healthy control


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G5_ad008


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G5_ad007


title: 202760950174_R04C01_whole blood healthy control


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_G6_ad001


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title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_E10_ad012


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_E11_ad007


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_E11_ad012


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title: 202796590042_R05C01_whole blood Mild Cognitive Impairment


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title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_E10_ad004


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_D9_ad012


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title: 202790040085_R01C01_whole blood healthy control


title: 202790040153_R03C01_whole blood healthy control


title: 202790040016_R01C01_whole blood Alzheimer's disease


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title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_D2_ad007


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title: 202796590027_R06C01_whole blood Alzheimer's disease


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title: 202790040073_R05C01_whole blood Mild Cognitive Impairment


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title: 202790040073_R04C01_whole blood Alzheimer's disease


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title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_D1_ad004


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_D12_ad012


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_D12_ad010


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title: 202796590008_R04C01_whole blood Alzheimer's disease


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title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_D11_ad012


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_D11_ad010


title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_D11_ad001


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title: 202790040052_R03C01_whole blood healthy control


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title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_C7_ad001


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title: 202764140144_R07C01_whole blood Alzheimer's disease


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title: 202790040032_R02C01_whole blood Alzheimer's disease


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title: 202790040127_R06C01_whole blood Mild Cognitive Impairment


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title: 202790040043_R06C01_whole blood Alzheimer's disease


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title: 202761400010_R08C01_whole blood Mild Cognitive Impairment


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title: 180508_CEMBA_mm_P56_P63_RS2_Pool21_P3_Pool21_P4_C8_ad004


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title: 202790040009_R02C01_whole blood healthy control


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