title: A20-39 A26A20-39 A26_ROI007PanCK+

city: Seattle

first: Jason

middle: W

last: Reeves

state: WA

address: 530 Fairview Blvd

department: R&D

institute: Nanostring

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-D08.dcc

data_processing:
Library strategy: GeoMx Seq
Adapter trimming with trim galore,  trimGaloreOpts = " --hardtrim5 26 --dont_gzip"
If paired-end, merge overlapping R1 and R2 with flash2, flash2Opts = " -m 26 -e 26 -f 26 -s 1 -r 27"
Extract UMIs in bowtie2, umiExtractOpts = " --bc-pattern=NNNNNNNNNNNNNN"
Align RTS_IDs (probe barcodes) using bowtie2, bowtie2Opts = " --end-to-end -L 4 --trim5 0 --trim3 0 --norc"
Deduplication using UMI-tools, umiDedupOpts = " --edit-distance-threshold=1"
Genome_build: N/A, sequencing of synthetic tags and alignment to whitelist of RTS_IDs (probe barcodes) found in the config.ini output from the GeoMx DSP platform, see attached NanoString GeoMx COVID19 Immune Response Atlas v1 Platform file & GeoMx_COVID19_v1.0.pkc file
Supplementary_files_format_and_content: Digital Count Conversion (DCC) file format outputted from GeoMx NGS Pipeline, contains software versions, scan attributes, GeoMx NGS pipeline parameters and output metrics, Q30 scores, and list of deduplicated counts per RTS_ID (probe barcode)
Supplementary_files_format_and_content: Values represented in the collapsed target counts tab are the geometric mean of the probes for a given, removing any targets flagged as outliers. Analyzed counts represent the upper quartile normalized collapsed counts across the study after removing QC flagged segments.

organism:
Homo sapiens
Severe acute respiratory syndrome coronavirus 2

source_name: FFPE Rapid Autopsy Tissue

extract_protocol:
Samples were incubated with DNA-oligo barcoded RNA-ISH probes which were conjugated with a UV-photocleavable linker following standard ISH protocols, along with flourescently labeled antibodies for visualization of morphological structures. Regions of interest within the tissue were illuminated with UV light and oligo barcodes were physically aspirated from the tissue and collected into microtiter plates by the GeoMx® Digital Spatial Profiler (DSP) platform. For more information about DSP protocols please see Merritt et al. Nature Biotech 2020 (doi: 10.1038/s41598-020-63539-x)
Each collection of oligo tags from one well (representing an AOI from the tissue section) was indexed with i7xi5 unique dual indexes using GeoMx SeqCode primers with 18 cycles of PCR.  After PCR, indexed AOIs were pooled and purified in two rounds of AMPure XP PCR purification using 1.2x bead:sample ratio.

tag: case number

value: Control 3

tag: patient id

tag: roi number

tag: segment type

tag: tissue substructure

value: Alveoli

tag: sars-cov-2 rna ish

value: Control

tag: patient viral load

tag: roi x coordinate

tag: roi y coordinate

tag: rawreads

tag: trimmedreads

tag: stitchedreads

tag: alignedreads

tag: deduplicatedreads

tag: sequencingsaturation

tag: note


title: A20-39 A26A20-39 A26_ROI011PanCK-

status: Public on Nov 14 2020

type: SRA

country: USA

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-E04.dcc

library_source: transcriptomic

molecule: total RNA

value: Bronchial


title: A20-39 A26A20-39 A26_ROI006geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-D07.dcc

value: Geometric


title: A20-39 A26A20-39 A26_ROI012PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-E05.dcc


title: A20-39 A26A20-39 A26_ROI004geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-D05.dcc


title: A20-39 A26A20-39 A26_ROI008PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-D09.dcc


title: A20-39 A26A20-39 A26_ROI009PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-D12.dcc


title: A20-39 A26A20-39 A26_ROI005geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-D06.dcc


title: A20-39 A26A20-39 A26_ROI010PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-E02.dcc


title: A20-39 A26A20-39 A26_ROI012PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-E06.dcc


title: A20-39 A26A20-39 A26_ROI010PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-E01.dcc


title: A20-39 A26A20-39 A26_ROI008PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-D10.dcc


title: Liver_2_03

city: Austin

first: Anna

last: Battenhouse

state: TX

address: 100 East 24th St., Stop A5000

department: Center for Biomedical Research Support

institute: The University of Texas at Austin

data_processing:
Quality control was performed on the sequencing fastq files using FastQC (ver. 0.11.9, Babraham Bioinformatics).
Paired-end pseudo alignment was performed using kallisto (ver. 0.45.0) with the -rf-stranded option, against the mouse transcriptome (GENCODE M24 transcript sequences).
Downstream analysis of kallisto estimated counts was performed in R (ver. 3.4.4).
The tximport package was used to roll up transcript-level counts into gene-level counts provided to the DESeq2 package (ver. 1.18.1).
Before DESeq2 analysis, count data matrices were filtered to remove genes with fewer than 1 read across all included samples.
Genome_build: GENCODE M24 transcriptome (transcript sequences and main gene annotation set)
Supplementary_files_format_and_content: Tab-delimited transcript_abundance.tsv text files provide kallisto per-transcript estimated counts and transcripts per million values for each sample.

molecule: polyA RNA

organism: Mus musculus

source_name: Liver

growth_protocol: C57BL/6N Dusp11tm1a(EUCOMM)Wtsi mice were generated by IVF using frozen sperm (EM: 09991) obtained from the European Mouse Mutant Archive and maintained on the C57BL/6N.  (Taconic) background. Age/sex-matched C57BL/6N wild-type and homozygote Dusp11 tm1a/tm1a mice were used experiments.

extract_protocol:
Total RNA from mouse tissue samples were extracted using TRIzol reagent. Snap frozen tissue samples were thawed and homogenized in the lysing matrix tubes containing TRIzol prior to RNA extraction.
mRNAs were isolated using oligo(dT)-attached magnetic beads, fragmented and reverse-transcribed for cDNA synthesis. Adapter-ligated cDNA fragments were PCR amplified and libraries were validated using the Agilent 2100 Bioanalyzer. Qualified double-stranded PCR products were then circularized to produce the final single strand circle DNA library. Libraries were amplified with phi29 to generate DNA nanoballs and were loaded onto BGISEQ-500 DNBseq platform (BGI) flow cells for 100 bp paired end sequencing.

treatment_protocol: Mice were either treated with in vitro transcribed VSV 5’-triphosphate PAMP RNA, complexed with in vivo-JetPEI (PolyPlus) using an N/P (nitrogen/phosphate) ratio of 8, or mock-treated with RNA lacking immunostimulatory activity complexed with in vivo-JetPEI (mock-treated), or not treated at all (untreated).

tag: strain

tag: tissue

value: liver

tag: genotype

value: wild-type

tag: Sex

value: male

tag: treatment

value: 5'-ppp RNA-stimulated

tag: age (months)


title: Liver_2_02

value: DUSP11 tm1a/tm1a


title: A20-39 A26A20-39 A26_ROI001geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-D02.dcc

tag: case number

tag: patient id

tag: roi number

tag: segment type

tag: tissue substructure

tag: sars-cov-2 rna ish


title: A20-39 A26A20-39 A26_ROI003geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-D04.dcc

tag: patient viral load

tag: roi x coordinate

tag: roi y coordinate

tag: rawreads

tag: trimmedreads

tag: stitchedreads


title: Liver_1_03

tag: strain

tag: tissue

value: female

value: mock-treated


title: A20-35 A11A20-35 A11_ROI011PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-C11.dcc

value: Control 2

tag: alignedreads

tag: deduplicatedreads

tag: sequencingsaturation

tag: note


title: Liver_1_01

tag: genotype

tag: Sex

tag: treatment

tag: age (months)


title: A20-35 A11A20-35 A11_ROI012PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-C12.dcc

tag: case number

tag: patient id

tag: roi number

tag: segment type

tag: tissue substructure

tag: sars-cov-2 rna ish


title: A20-35 A11A20-35 A11_ROI011PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-C10.dcc

tag: patient viral load

tag: roi x coordinate

tag: roi y coordinate

tag: rawreads

tag: trimmedreads

tag: stitchedreads


title: A20-35 A11A20-35 A11_ROI012PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-D01.dcc

tag: alignedreads

tag: deduplicatedreads

tag: sequencingsaturation

tag: note


title: A20-35 A11A20-35 A11_ROI010PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-C09.dcc


title: A20-35 A11A20-35 A11_ROI010PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-C08.dcc


title: A20-35 A11A20-35 A11_ROI009PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-C07.dcc


title: A20-39 A26A20-39 A26_ROI011PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-E03.dcc


title: A20-39 A26A20-39 A26_ROI009PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-D11.dcc


title: A20-35 A11A20-35 A11_ROI009PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-C06.dcc


title: A20-35 A11A20-35 A11_ROI008PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-C05.dcc


title: A20-39 A26A20-39 A26_ROI002geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-D03.dcc


title: A20-35 A11A20-35 A11_ROI008PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-C04.dcc


title: A20-35 A11A20-35 A11_ROI007PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-C03.dcc


title: A20-35 A11A20-35 A11_ROI007PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-C02.dcc


title: A20-49 A10A20-49 A10_ROI012PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-B07.dcc

value: Control 1


title: A20-35 A11A20-35 A11_ROI005geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-B12.dcc


title: A20-49 A10A20-49 A10_ROI011PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-B04.dcc


title: A20-35 A11A20-35 A11_ROI004geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-B11.dcc


title: A20-35 A11A20-35 A11_ROI002geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-B09.dcc


title: A20-49 A10A20-49 A10_ROI010PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-B03.dcc


title: A20-49 A10A20-49 A10_ROI012PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-B06.dcc


title: A20-35 A11A20-35 A11_ROI001geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-B08.dcc


title: A20-35 A11A20-35 A11_ROI003geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-B10.dcc


title: A20-49 A10A20-49 A10_ROI009PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-B01.dcc


title: A20-49 A10A20-49 A10_ROI007PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-A08.dcc


title: A20-49 A10A20-49 A10_ROI006geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-A07.dcc


title: A20-49 A10A20-49 A10_ROI009PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-A12.dcc


title: A20-49 A10A20-49 A10_ROI008PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-A11.dcc


title: A20-49 A10A20-49 A10_ROI004geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-A05.dcc


title: A20-49 A10A20-49 A10_ROI007PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-A09.dcc


title: A20-49 A10A20-49 A10_ROI001geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-A02.dcc


title: A20-49 A10A20-49 A10_ROI005geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-A06.dcc


title: A20-49 A10A20-49 A10_ROI003geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-A04.dcc


title: A20-49 A10A20-49 A10_ROI008PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-A10.dcc


title: A20-95 A1A20-95 A1_ROI035geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-D12.dcc

value: Case 4

value: LN

value: Negative


title: A20-95 A1A20-95 A1_ROI034PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-D11.dcc


title: A20-49 A10A20-49 A10_ROI011PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-B05.dcc


title: A20-35 A11A20-35 A11_ROI006geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-C01.dcc


title: A20-95 A1A20-95 A1_ROI034PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-D10.dcc


title: A20-95 A1A20-95 A1_ROI031PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-D04.dcc


title: A20-95 A1A20-95 A1_ROI032PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-D07.dcc


title: A20-95 A1A20-95 A1_ROI032PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-D06.dcc


title: A20-95 A1A20-95 A1_ROI031PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-D05.dcc


title: A20-95 A1A20-95 A1_ROI030PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-D03.dcc


title: A20-95 A1A20-95 A1_ROI030PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-D02.dcc


title: A20-95 A1A20-95 A1_ROI028PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-C11.dcc


title: A20-49 A10A20-49 A10_ROI002geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-A03.dcc


title: A20-95 A1A20-95 A1_ROI029PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-D01.dcc


title: A20-95 A1A20-95 A1_ROI027PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-C08.dcc


title: A20-95 A1A20-95 A1_ROI028PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-C10.dcc


title: A20-95 A1A20-95 A1_ROI029PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-C12.dcc


title: A20-95 A1A20-95 A1_ROI026PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-C07.dcc


title: A20-95 A1A20-95 A1_ROI036geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-E01.dcc


title: A20-95 A1A20-95 A1_ROI024PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-C02.dcc


title: A20-95 A1A20-95 A1_ROI025PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-C04.dcc


title: A20-95 A1A20-95 A1_ROI024PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-C03.dcc


title: A20-95 A1A20-95 A1_ROI025PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-C05.dcc


title: A20-95 A1A20-95 A1_ROI026PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-C06.dcc


title: A20-95 A1A20-95 A1_ROI027PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-C09.dcc


title: A20-95 A1A20-95 A1_ROI023PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-B12.dcc


title: A20-95 A1A20-95 A1_ROI022geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-B11.dcc


title: A20-95 A1A20-95 A1_ROI021geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-B10.dcc


title: A20-95 A1A20-95 A1_ROI023PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-C01.dcc


title: A20-95 A1A20-95 A1_ROI033PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-D08.dcc


title: A20-95 A1A20-95 A1_ROI020geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-B09.dcc


title: A20-95 A1A20-95 A1_ROI019geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-B08.dcc


title: A20-95 A1A20-95 A1_ROI033PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-D09.dcc


title: A20-95 A1A20-95 A1_ROI018geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-B07.dcc


title: A20-95 A1A20-95 A1_ROI017geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-B06.dcc


title: A20-95 A1A20-95 A1_ROI016geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-B05.dcc


title: A20-95 A1A20-95 A1_ROI012geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-B01.dcc


title: A20-95 A1A20-95 A1_ROI014geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-B03.dcc


title: A20-95 A1A20-95 A1_ROI011geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-A12.dcc


title: A20-95 A1A20-95 A1_ROI010geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-A11.dcc


title: A20-95 A1A20-95 A1_ROI009geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-A10.dcc


title: A20-95 A1A20-95 A1_ROI007geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-A08.dcc


title: A20-95 A1A20-95 A1_ROI006geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-A07.dcc


title: A20-95 A1A20-95 A1_ROI004geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-A05.dcc


title: A20-95 A1A20-95 A1_ROI003geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-A04.dcc


title: A20-95 A1A20-95 A1_ROI001geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-A02.dcc


title: A20-97 A1A20-97 A1_ROI039geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-D09.dcc

value: Case 5


title: A20-95 A1A20-95 A1_ROI005geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-A06.dcc

value: Alveoli


title: A20-97 A1A20-97 A1_ROI038geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-D08.dcc


title: A20-97 A1A20-97 A1_ROI036geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-D06.dcc


title: A20-97 A1A20-97 A1_ROI037geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-D07.dcc


title: A20-97 A1A20-97 A1_ROI035geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-D05.dcc

value: Carbon_rich_macrophage rich region


title: A20-97 A1A20-97 A1_ROI034geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-D04.dcc


title: A20-97 A1A20-97 A1_ROI032geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-D02.dcc


title: A20-97 A1A20-97 A1_ROI030geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-C12.dcc


title: A20-97 A1A20-97 A1_ROI031geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-D01.dcc


title: A20-97 A1A20-97 A1_ROI029PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-C11.dcc


title: A20-95 A1A20-95 A1_ROI015geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-B04.dcc


title: A20-95 A1A20-95 A1_ROI013geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-B02.dcc


title: A20-97 A1A20-97 A1_ROI029PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-C10.dcc


title: A20-95 A1A20-95 A1_ROI008geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-A09.dcc


title: A20-97 A1A20-97 A1_ROI028PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-C09.dcc


title: A20-97 A1A20-97 A1_ROI028PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-C08.dcc


title: A20-97 A1A20-97 A1_ROI027PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-C07.dcc


title: A20-97 A1A20-97 A1_ROI026PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-C05.dcc


title: A20-97 A1A20-97 A1_ROI027PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-C06.dcc


title: A20-95 A1A20-95 A1_ROI002geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004780001591-A03.dcc


title: A20-97 A1A20-97 A1_ROI026PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-C04.dcc


title: A20-97 A1A20-97 A1_ROI025PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-C02.dcc


title: A20-97 A1A20-97 A1_ROI023geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-B12.dcc


title: A20-97 A1A20-97 A1_ROI024geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-C01.dcc


title: A20-97 A1A20-97 A1_ROI021geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-B10.dcc


title: A20-97 A1A20-97 A1_ROI020geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-B09.dcc


title: A20-97 A1A20-97 A1_ROI033geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-D03.dcc


title: A20-97 A1A20-97 A1_ROI019geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-B08.dcc


title: A20-97 A1A20-97 A1_ROI018geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-B07.dcc


title: A20-97 A1A20-97 A1_ROI022geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-B11.dcc


title: A20-97 A1A20-97 A1_ROI017geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-B06.dcc


title: A20-97 A1A20-97 A1_ROI015geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-B04.dcc


title: A20-97 A1A20-97 A1_ROI010geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-A11.dcc

value: Positive


title: A20-97 A1A20-97 A1_ROI011geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-A12.dcc

value: Geometric


title: A20-97 A1A20-97 A1_ROI013geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-B02.dcc


title: A20-97 A1A20-97 A1_ROI014geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-B03.dcc


title: A20-97 A1A20-97 A1_ROI012geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-B01.dcc


title: A20-97 A1A20-97 A1_ROI008geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-A09.dcc


title: A20-97 A1A20-97 A1_ROI009geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-A10.dcc


title: A20-97 A1A20-97 A1_ROI007geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-A08.dcc


title: A20-97 A1A20-97 A1_ROI005geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-A06.dcc


title: A20-97 A1A20-97 A1_ROI004geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-A05.dcc


title: A20-97 A1A20-97 A1_ROI025PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-C03.dcc


title: A20-97 A1A20-97 A1_ROI006geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-A07.dcc


title: A20-97 A1A20-97 A1_ROI002geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-A03.dcc


title: A20-49 A10A20-49 A10_ROI010PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1012556022000-B02.dcc

value: Control


title: A20-97 A1A20-97 A1_ROI001geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-A02.dcc


title: A20-97 A1A20-97 A1_ROI003geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-A04.dcc


title: A20-90 A1A20-90 A1_ROI036geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-F05.dcc

value: Case 2


title: A20-90 A1A20-90 A1_ROI035geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-F04.dcc


title: A20-90 A1A20-90 A1_ROI033PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-F01.dcc


title: A20-90 A1A20-90 A1_ROI034PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-F03.dcc


title: A20-90 A1A20-90 A1_ROI034PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-F02.dcc


title: A20-90 A1A20-90 A1_ROI033PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-E12.dcc


title: A20-90 A1A20-90 A1_ROI032PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-E11.dcc


title: A20-90 A1A20-90 A1_ROI032PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-E10.dcc


title: A20-90 A1A20-90 A1_ROI031PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-E08.dcc


title: A20-90 A1A20-90 A1_ROI031PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-E09.dcc


title: A20-90 A1A20-90 A1_ROI030PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-E06.dcc


title: A20-97 A1A20-97 A1_ROI016geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032843-B05.dcc


title: A20-90 A1A20-90 A1_ROI029PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-E05.dcc


title: A20-90 A1A20-90 A1_ROI028PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-E03.dcc


title: A20-90 A1A20-90 A1_ROI027PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-E01.dcc


title: A20-90 A1A20-90 A1_ROI028PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-E02.dcc


title: A20-90 A1A20-90 A1_ROI029PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-E04.dcc


title: A20-90 A1A20-90 A1_ROI027PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-D12.dcc


title: A20-90 A1A20-90 A1_ROI026PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-D11.dcc


title: A20-90 A1A20-90 A1_ROI026PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-D10.dcc


title: A20-90 A1A20-90 A1_ROI023PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-D05.dcc


title: A20-90 A1A20-90 A1_ROI024PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-D07.dcc


title: A20-90 A1A20-90 A1_ROI025PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-D08.dcc


title: A20-90 A1A20-90 A1_ROI023PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-D04.dcc


title: A20-90 A1A20-90 A1_ROI024PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-D06.dcc


title: A20-90 A1A20-90 A1_ROI022PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-D03.dcc


title: A20-90 A1A20-90 A1_ROI021PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-C12.dcc

value: Bronchial


title: A20-90 A1A20-90 A1_ROI022PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-D02.dcc


title: A20-90 A1A20-90 A1_ROI030PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-E07.dcc


title: A20-90 A1A20-90 A1_ROI020PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-C10.dcc


title: A20-90 A1A20-90 A1_ROI019PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-C08.dcc


title: A20-90 A1A20-90 A1_ROI017geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-C06.dcc


title: A20-90 A1A20-90 A1_ROI018geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-C07.dcc


title: A20-90 A1A20-90 A1_ROI020PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-C11.dcc


title: A20-90 A1A20-90 A1_ROI015geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-C04.dcc


title: A20-90 A1A20-90 A1_ROI019PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-C09.dcc


title: A20-90 A1A20-90 A1_ROI016geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-C05.dcc


title: A20-90 A1A20-90 A1_ROI013geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-C02.dcc


title: A20-90 A1A20-90 A1_ROI014geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-C03.dcc


title: A20-90 A1A20-90 A1_ROI012geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-C01.dcc


title: A20-90 A1A20-90 A1_ROI011geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-B12.dcc


title: A20-90 A1A20-90 A1_ROI025PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-D09.dcc


title: A20-90 A1A20-90 A1_ROI006geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-B07.dcc


title: A20-90 A1A20-90 A1_ROI008geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-B09.dcc


title: A20-90 A1A20-90 A1_ROI009geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-B10.dcc


title: A20-90 A1A20-90 A1_ROI004geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-B05.dcc


title: A20-90 A1A20-90 A1_ROI007geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-B08.dcc


title: A20-90 A1A20-90 A1_ROI010geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-B11.dcc


title: A20-90 A1A20-90 A1_ROI005geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-B06.dcc


title: A20-90 A1A20-90 A1_ROI002geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-B03.dcc


title: A20-90 A1A20-90 A1_ROI003geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-B04.dcc


title: A20-87 A12A20-87 A12_ROI029PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-F11.dcc

value: Case 1 LLL


title: A20-87 A12A20-87 A12_ROI030PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-F12.dcc


title: A20-87 A12A20-87 A12_ROI029PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-F10.dcc


title: A20-87 A12A20-87 A12_ROI028PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-F09.dcc


title: A20-87 A12A20-87 A12_ROI028PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-F08.dcc


title: A20-87 A12A20-87 A12_ROI027PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-F06.dcc


title: A20-87 A12A20-87 A12_ROI026PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-F04.dcc


title: A20-87 A12A20-87 A12_ROI025PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-F02.dcc


title: A20-87 A12A20-87 A12_ROI025PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-F03.dcc


title: A20-87 A12A20-87 A12_ROI022geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-E11.dcc


title: A20-87 A12A20-87 A12_ROI026PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-F05.dcc


title: A20-87 A12A20-87 A12_ROI021geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-E10.dcc


title: A20-87 A12A20-87 A12_ROI020geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-E09.dcc


title: A20-87 A12A20-87 A12_ROI023geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-E12.dcc


title: A20-87 A12A20-87 A12_ROI018geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-E07.dcc


title: A20-87 A12A20-87 A12_ROI030PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-G01.dcc


title: A20-90 A1A20-90 A1_ROI001geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-B02.dcc


title: A20-90 A1A20-90 A1_ROI021PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1004300032841-D01.dcc


title: A20-87 A12A20-87 A12_ROI016geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-E05.dcc


title: A20-87 A12A20-87 A12_ROI013geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-E02.dcc


title: A20-87 A12A20-87 A12_ROI015geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-E04.dcc


title: A20-87 A12A20-87 A12_ROI012geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-E01.dcc


title: A20-87 A12A20-87 A12_ROI014geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-E03.dcc


title: A20-87 A12A20-87 A12_ROI007geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-D08.dcc


title: A20-87 A12A20-87 A12_ROI006geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-D07.dcc


title: A20-87 A12A20-87 A12_ROI009geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-D10.dcc


title: A20-87 A12A20-87 A12_ROI027PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-F07.dcc


title: A20-87 A12A20-87 A12_ROI017geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-E06.dcc


title: A20-87 A12A20-87 A12_ROI011geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-D12.dcc


title: A20-87 A12A20-87 A12_ROI005geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-D06.dcc


title: A20-87 A12A20-87 A12_ROI008geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-D09.dcc


title: A20-87 A12A20-87 A12_ROI024geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-F01.dcc


title: A20-87 A12A20-87 A12_ROI004geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-D05.dcc


title: A20-87 A12A20-87 A12_ROI003geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-D04.dcc


title: A20-87 A1A20-87 A1_ROI029PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-C11.dcc

value: Case 1 LUL


title: A20-87 A12A20-87 A12_ROI019geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-E08.dcc


title: A20-87 A12A20-87 A12_ROI002geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-D03.dcc


title: A20-87 A1A20-87 A1_ROI030PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-C12.dcc


title: A20-87 A1A20-87 A1_ROI030PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-D01.dcc


title: A20-87 A1A20-87 A1_ROI029PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-C10.dcc


title: A20-87 A12A20-87 A12_ROI001geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-D02.dcc


title: A20-87 A1A20-87 A1_ROI028PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-C09.dcc


title: A20-87 A1A20-87 A1_ROI027PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-C07.dcc


title: A20-87 A12A20-87 A12_ROI010geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-D11.dcc


title: A20-87 A1A20-87 A1_ROI027PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-C06.dcc


title: A20-87 A1A20-87 A1_ROI026PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-C05.dcc


title: A20-87 A1A20-87 A1_ROI028PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-C08.dcc


title: A20-87 A1A20-87 A1_ROI026PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-C04.dcc


title: A20-87 A1A20-87 A1_ROI024geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-C01.dcc


title: A20-87 A1A20-87 A1_ROI022geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-B11.dcc


title: A20-87 A1A20-87 A1_ROI023geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-B12.dcc


title: A20-87 A1A20-87 A1_ROI025PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-C02.dcc


title: A20-87 A1A20-87 A1_ROI021geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-B10.dcc


title: A20-87 A1A20-87 A1_ROI019geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-B08.dcc


title: A20-87 A1A20-87 A1_ROI017geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-B06.dcc


title: A20-87 A1A20-87 A1_ROI025PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-C03.dcc


title: A20-87 A1A20-87 A1_ROI020geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-B09.dcc


title: A20-87 A1A20-87 A1_ROI016geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-B05.dcc


title: A20-87 A1A20-87 A1_ROI014geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-B03.dcc


title: A20-87 A1A20-87 A1_ROI018geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-B07.dcc


title: A20-87 A1A20-87 A1_ROI015geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-B04.dcc


title: A20-87 A1A20-87 A1_ROI013geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-B02.dcc


title: A20-87 A1A20-87 A1_ROI012geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-B01.dcc


title: A20-87 A1A20-87 A1_ROI011geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-A12.dcc


title: A20-87 A1A20-87 A1_ROI009geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-A10.dcc


title: A20-87 A1A20-87 A1_ROI006geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-A07.dcc


title: A20-87 A1A20-87 A1_ROI007geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-A08.dcc


title: A20-87 A1A20-87 A1_ROI002geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-A03.dcc


title: A20-87 A1A20-87 A1_ROI003geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-A04.dcc


title: A20-87 A1A20-87 A1_ROI001geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-A02.dcc


title: A20-87 A1A20-87 A1_ROI005geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-A06.dcc


title: A20-87 A1A20-87 A1_ROI008geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-A09.dcc


title: A20-104 A31A20-104 A31_ROI035PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-H11.dcc

value: Case 8


title: A20-104 A31A20-104 A31_ROI033PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-H09.dcc


title: A20-104 A31A20-104 A31_ROI036PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-H12.dcc


title: A20-104 A31A20-104 A31_ROI031PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-H07.dcc


title: A20-104 A31A20-104 A31_ROI032PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-H08.dcc


title: A20-104 A31A20-104 A31_ROI030PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-H06.dcc


title: A20-104 A31A20-104 A31_ROI029PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-H05.dcc


title: A20-104 A31A20-104 A31_ROI026PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-G12.dcc


title: A20-104 A31A20-104 A31_ROI027PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-H02.dcc


title: A20-104 A31A20-104 A31_ROI025PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-G10.dcc


title: A20-104 A31A20-104 A31_ROI027PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-H01.dcc


title: A20-104 A31A20-104 A31_ROI025PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-G09.dcc


title: A20-104 A31A20-104 A31_ROI028PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-H04.dcc


title: A20-104 A31A20-104 A31_ROI023PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-G06.dcc


title: A20-104 A31A20-104 A31_ROI028PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-H03.dcc


title: A20-104 A31A20-104 A31_ROI026PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-G11.dcc


title: A20-104 A31A20-104 A31_ROI024PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-G07.dcc


title: A20-104 A31A20-104 A31_ROI024PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-G08.dcc


title: A20-87 A1A20-87 A1_ROI004geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-A05.dcc


title: A20-87 A1A20-87 A1_ROI010geometric

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1002450001590-A11.dcc


title: A20-104 A31A20-104 A31_ROI023PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-G05.dcc


title: A20-104 A31A20-104 A31_ROI022PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-G04.dcc


title: A20-104 A31A20-104 A31_ROI022PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-G03.dcc


title: A20-104 A31A20-104 A31_ROI021PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-G02.dcc


title: A20-104 A31A20-104 A31_ROI020PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-F12.dcc


title: A20-104 A31A20-104 A31_ROI021PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-G01.dcc


title: A20-104 A31A20-104 A31_ROI020PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-F11.dcc


title: A20-104 A31A20-104 A31_ROI019PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-F10.dcc


title: A20-104 A31A20-104 A31_ROI018PanCK-

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-F08.dcc


title: A20-104 A31A20-104 A31_ROI018PanCK+

description:
Samples were pooled during library preparation and split across lanes. Individual FASTQ files were generated for each lane, forward & reverse primers. The Fastq files contain the same identifier as the sample name for aggregation
DSP-1001250365000-F07.dcc