title: Dec.Plate_6_A10_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_6_A10


title: Dec.Plate_5_H9_GC_DP_60H_DZ

status: Public on Dec 10 2020

type: SRA

city: New York

first: Gabriel

last: Victora

state: NY

address: 1230 York Avenue

country: USA

institute: The Rockefeller University

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_H9

library_source: transcriptomic

data_processing:
Raw fastq sequence files generated from Smartseq2 libraries were aligned to mouse genome (v. mm10) with the annotated transcriptome (v. gencode M22) using STAR (v. 2.6)(Dobin et al., 2013). Subsequently, genome-mapped BAM files were processed through RSEM (v. 1.3.1)(Li and Dewey, 2011) for gene quantification. The matrix of gene counts was then, used as input for analysis by the R package Seurat (v. 3.1.4.)(Stuart et al., 2019). Next, the dataset was corrected by using the regularized negative binomial regression (SCTransform) implemented by Seurat (Hafemeister and Satija, 2019). To control the dataset for unwanted sources of experimental variation, we fed the mitochondrial gene abundance and the experimental batches information into SCTransform. Additionally, cells containing more than 20% of sequence reads aligned to mitochondrial genes were excluded prior to normalization. Next, single cells were clustered and gene expression were evaluated with the Seurat workflow. Gene signature scoring was performed by using Seurat’s AddModuleScore function (See Supplemental Spreadsheet 1 for the complete list).
Genome_build: mm10
Supplementary_files_format_and_content: txt files contain raw, individual quantification matrices per experiment
Supplementary_files_format_and_content: tsv files contain metadata tables, umap/pca embeddings, and quality filtered raw and normalized quantification

molecule: total RNA

organism: Mus musculus

source_name: Germinal Centers

extract_protocol:
Cell suspensions were resuspended in PBE and incubated on ice for 30 min with fluorescently-labeled antibodies (Table S2) along with 1 mg/mL of anti-CD16/32 (24G2, eBioscience). For detection of cells in early S of the cell cycle, we performed dual nucleotide pulse and staining as previously described (Gitlin et al., 2014). Briefly, mice were injected i.v. with 1 mg of EdU (A10044, Thermo Fisher Scientific) and one hour later with 2 mg of BrdU (B5002, Sigma). 30 min after the second injection, lymph nodes were harvested, and single cell suspensions were prepared. After cell surface receptor staining as described above, cells were fixed and permeabilized using BD Cytofix/Cytoperm™ fixation and permeabilization solution and BD Cytoperm Permeabilization Buffer PLUS, respectively. EdU and BrdU incorporation into DNA was assayed using the Click-iT Plus EdU Alexa Fluor 647 Flow Cytometry Assay Kit (Invitrogen) and FITC BrdU Flow Kit (BD), respectively. For single cell sorting, cells were stained as above and index-sorted directly into 96 well plates containing Buffer TCL (Qiagen) supplemented with 1% -mercaptoethanol using a BD FACS Aria II. Each plate contained all conditions assayed in each replicate. Cells were washed, filtered, and resuspended in PBE prior to analysis or sorting on BD FACS LSR II, FACS Symphony or FACS ARIA II cytometers. All data were analyzed using Flowjo software v.10.
Libraries were prepared as previously described (Trombetta et al., 2014). Briefly, nucleic acids were extracted from sorted single cell using RNAClean XP SPRI beads (Beckman Coulter), and RNA was hybridized first using RT primer (/5BiosG/AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTVN) then reverse-transcribed into cDNA using TSO primer (AAGCAGTGGTATCAACGCAGAGTACATrGrGrG) and RT maxima reverse transcriptase (Thermo Fisher Scientific). cDNA was amplified using ISPCR primer (AAGCAGTGGTATCAACGCAGAGT) and KAPA HiFi HotStart ReadyMix (Fisher Scientific), cleaned up using RNAClean XP SPRI beads three times, and tagmented using Nextera XT DNA Library Preparation Kit (Illumina). For each sequencing batch, up to four plates were barcoded at a time with Nextera XT Index Kit v2 Sets A-D (Illumina). Finally, dual-barcoded libraries were pooled and sequenced using Illumina Hiseq2500 (experiment 1)/Nextseq 550 (experiments 2-4) platform.
Smartseq2

tag: dec

tag: timepoint

tag: zone

tag: sequencing

tag: genotype


title: Dec.Plate_5_H8_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_H8


title: Dec.Plate_5_H7_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_H7


title: Dec.Plate_5_H6_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_H6


title: Dec.Plate_5_H5_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_H5


title: Dec.Plate_5_H4_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_H4


title: Dec.Plate_5_H3_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_H3


title: Dec.Plate_5_H12_GC_DP_60H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_H12

value: unidentified


title: Dec.Plate_5_H10_GC_DP_60H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_H10


title: Dec.Plate_5_H2_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_H2


title: Dec.Plate_5_G8_GC_DP_60H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_G8


title: Dec.Plate_5_G7_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_G7


title: Dec.Plate_5_G6_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_G6


title: Dec.Plate_5_H11_GC_DP_60H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_H11


title: Dec.Plate_5_G4_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_G4


title: Dec.Plate_5_G3_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_G3


title: Dec.Plate_5_G9_GC_DP_60H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_G9


title: Dec.Plate_5_G2_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_G2


title: Dec.Plate_5_G10_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_G10


title: Dec.Plate_5_F9_GC_DP_60H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_F9


title: Dec.Plate_5_F7_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_F7


title: Dec.Plate_5_G1_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_G1


title: Dec.Plate_5_G11_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_G11


title: Dec.Plate_5_F8_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_F8


title: Dec.Plate_5_F4_GC_DP_30H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_F4


title: Dec.Plate_5_F5_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_F5


title: Dec.Plate_5_F2_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_F2


title: Dec.Plate_5_H1_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_H1


title: Dec.Plate_5_F12_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_F12


title: Dec.Plate_5_F3_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_F3


title: Dec.Plate_5_F10_GC_DP_60H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_F10


title: Dec.Plate_5_F11_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_F11


title: Dec.Plate_5_E7_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_E7


title: Dec.Plate_5_E8_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_E8


title: Dec.Plate_5_E6_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_E6


title: Dec.Plate_5_G5_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_G5


title: Dec.Plate_5_E9_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_E9


title: Dec.Plate_5_G12_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_G12


title: Dec.Plate_5_E1_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_E1


title: Dec.Plate_A_D12_GC_DP_30H_DZ

description:
4dec_09022020-scRNAseq.txt.gz
Dec.Plate_A_D12


title: Dec.Plate_5_E3_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_E3


title: Dec.Plate_5_E5_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_E5


title: Dec.Plate_5_E4_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_E4


title: Dec.Plate_5_E12_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_E12


title: Dec.Plate_5_E2_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_E2


title: Dec.Plate_5_F6_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_F6


title: Dec.Plate_5_D9_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_D9


title: Dec.Plate_5_D8_GC_DP_46H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_D8


title: Dec.Plate_5_D6_GC_DP_12H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_D6


title: Dec.Plate_5_D7_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_D7


title: Dec.Plate_5_E10_GC_DP_60H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_E10


title: Dec.Plate_A_E3_GC_DP_46H_DZ

description:
4dec_09022020-scRNAseq.txt.gz
Dec.Plate_A_E3


title: Dec.Plate_5_D2_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_D2


title: Dec.Plate_5_F1_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_F1


title: Dec.Plate_5_D10_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_D10


title: Dec.Plate_5_D11_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_D11


title: Dec.Plate_5_D4_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_D4


title: Dec.Plate_5_D3_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_D3


title: Dec.Plate_5_C9_GC_DP_46H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_C9


title: Dec.Plate_5_D12_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_D12


title: Dec.Plate_5_D1_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_D1


title: Dec.Plate_5_C8_GC_DP_46H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_C8


title: Dec.Plate_5_C5_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_C5


title: Dec.Plate_5_C6_GC_DP_12H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_C6


title: Dec.Plate_5_C12_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_C12


title: Dec.Plate_5_C10_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_C10


title: Dec.Plate_5_D5_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_D5


title: Dec.Plate_5_C7_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_C7


title: Dec.Plate_5_C4_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_C4


title: Dec.Plate_5_E11_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_E11


title: Dec.Plate_5_B6_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_B6


title: Dec.Plate_5_C1_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_C1


title: Dec.Plate_5_C3_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_C3


title: Dec.Plate_5_B9_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_B9


title: Dec.Plate_5_B1_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_B1


title: Dec.Plate_5_B7_GC_DP_46H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_B7


title: Dec.Plate_5_B8_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_B8


title: Dec.Plate_5_B11_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_B11


title: Dec.Plate_5_A8_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_A8


title: Dec.Plate_5_B4_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_B4


title: Dec.Plate_5_B3_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_B3


title: Dec.Plate_5_B2_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_B2


title: Dec.Plate_5_B12_GC_DP_46H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_B12


title: Dec.Plate_5_A9_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_A9


title: Dec.Plate_5_A4_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_A4


title: Dec.Plate_5_A7_GC_DP_46H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_A7


title: Dec.Plate_5_A5_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_A5


title: Dec.Plate_5_A6_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_A6


title: Dec.Plate_5_A1_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_A1


title: Dec.Plate_5_A12_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_A12


title: Dec.Plate_5_A2_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_A2


title: Dec.Plate_5_C2_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_C2


title: Dec.Plate_5_C11_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_C11


title: Dec.Plate_4_H9_GC_DP_60H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_H9


title: Dec.Plate_4_H8_GC_DP_60H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_H8


title: Dec.Plate_5_A10_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_A10


title: Dec.Plate_4_H6_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_H6


title: Dec.Plate_4_H3_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_H3


title: Dec.Plate_5_B5_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_B5


title: Dec.Plate_4_H4_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_H4


title: Dec.Plate_5_A11_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_A11


title: Dec.Plate_4_H2_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_H2


title: Dec.Plate_4_H7_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_H7


title: Dec.Plate_4_H12_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_H12


title: Dec.Plate_4_H1_GC_DP_60H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_H1


title: Dec.Plate_5_B10_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_B10


title: Dec.Plate_4_G9_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_G9


title: Dec.Plate_4_H10_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_H10


title: Dec.Plate_4_G8_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_G8


title: Dec.Plate_4_H5_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_H5


title: Dec.Plate_4_H11_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_H11


title: Dec.Plate_4_G6_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_G6


title: Dec.Plate_4_G5_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_G5


title: Dec.Plate_4_G7_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_G7


title: Dec.Plate_5_A3_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_5_A3


title: Dec.Plate_4_G4_GC_DP_30H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_G4


title: Dec.Plate_4_G10_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_G10


title: Dec.Plate_4_F9_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_F9


title: Dec.Plate_4_F8_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_F8


title: Dec.Plate_4_G2_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_G2


title: Dec.Plate_4_G1_GC_DP_60H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_G1


title: Dec.Plate_4_F6_GC_DP_30H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_F6


title: Dec.Plate_4_F5_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_F5


title: Dec.Plate_4_F7_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_F7


title: Dec.Plate_4_G11_GC_DP_60H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_G11


title: Dec.Plate_4_G12_GC_DP_60H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_G12


title: Dec.Plate_4_F3_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_F3


title: Dec.Plate_4_F2_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_F2


title: Dec.Plate_4_F4_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_F4


title: Dec.Plate_4_G3_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_G3


title: Dec.Plate_4_E2_GC_DP_30H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_E2


title: Dec.Plate_4_E4_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_E4


title: Dec.Plate_4_F1_GC_DP_60H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_F1


title: Dec.Plate_4_E1_GC_DP_30H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_E1


title: Dec.Plate_4_E7_GC_DP_60H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_E7


title: Dec.Plate_4_D9_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_D9


title: Dec.Plate_4_E9_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_E9


title: Dec.Plate_4_E8_GC_DP_60H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_E8


title: Dec.Plate_4_E10_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_E10


title: Dec.Plate_4_E11_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_E11


title: Dec.Plate_4_F10_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_F10


title: Dec.Plate_4_E3_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_E3


title: Dec.Plate_4_E12_GC_DP_60H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_E12


title: Dec.Plate_4_F12_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_F12


title: Dec.Plate_4_F11_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_F11


title: Dec.Plate_4_D7_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_D7


title: Dec.Plate_4_E5_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_E5


title: Dec.Plate_4_D11_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_D11


title: Dec.Plate_4_D4_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_D4


title: Dec.Plate_4_D12_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_D12


title: Dec.Plate_4_D2_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_D2


title: Dec.Plate_4_D3_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_D3


title: Dec.Plate_4_D6_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_D6


title: Dec.Plate_4_D8_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_D8


title: Dec.Plate_4_D5_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_D5


title: Dec.Plate_4_D1_GC_DP_12H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_D1


title: Dec.Plate_4_E6_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_E6


title: Dec.Plate_4_C5_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_C5


title: Dec.Plate_4_D10_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_D10


title: Dec.Plate_4_C9_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_C9


title: Dec.Plate_4_C3_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_C3


title: Dec.Plate_4_C8_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_C8


title: Dec.Plate_4_C2_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_C2


title: Dec.Plate_4_C7_GC_DP_46H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_C7


title: Dec.Plate_4_C12_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_C12


title: Dec.Plate_4_B8_GC_DP_46H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_B8


title: Dec.Plate_4_B7_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_B7


title: Dec.Plate_4_C4_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_C4


title: Dec.Plate_4_C10_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_C10


title: Dec.Plate_4_B4_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_B4


title: Dec.Plate_4_C1_GC_DP_12H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_C1


title: Dec.Plate_4_B5_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_B5


title: Dec.Plate_4_B2_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_B2


title: Dec.Plate_4_B10_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_B10


title: Dec.Plate_4_B9_GC_DP_46H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_B9


title: Dec.Plate_4_B3_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_B3


title: Dec.Plate_4_A6_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_A6


title: Dec.Plate_4_B12_GC_DP_46H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_B12


title: Dec.Plate_4_A9_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_A9


title: Dec.Plate_4_A7_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_A7


title: Dec.Plate_4_B11_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_B11


title: Dec.Plate_4_A4_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_A4


title: Dec.Plate_4_A2_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_A2


title: Dec.Plate_4_A12_GC_DP_46H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_A12


title: Dec.Plate_4_C11_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_C11


title: Dec.Plate_4_A5_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_A5


title: Dec.Plate_4_C6_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_C6


title: Dec.Plate_4_A11_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_A11


title: Dec.Plate_4_A8_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_A8


title: Dec.Plate_4_A3_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_A3


title: Dec.Plate_3_H2_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_H2


title: Dec.Plate_3_H12_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_H12


title: Dec.Plate_4_B6_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_B6


title: Dec.Plate_4_A1_GC_DP_12H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_A1


title: Dec.Plate_3_H9_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_H9


title: Dec.Plate_3_H11_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_H11


title: Dec.Plate_4_A10_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_4_A10


title: Dec.Plate_3_G7_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_G7


title: Dec.Plate_3_G6_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_G6


title: Dec.Plate_3_H7_GC_DP_60H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_H7


title: Dec.Plate_3_H8_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_H8


title: Dec.Plate_3_H5_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_H5


title: Dec.Plate_3_H4_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_H4


title: Dec.Plate_3_H3_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_H3


title: Dec.Plate_3_G5_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_G5


title: Dec.Plate_3_G4_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_G4


title: Dec.Plate_3_H6_GC_DP_30H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_H6


title: Dec.Plate_3_H1_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_H1


title: Dec.Plate_3_G8_GC_DP_60H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_G8


title: Dec.Plate_3_H10_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_H10


title: Dec.Plate_3_G9_GC_DP_60H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_G9


title: Dec.Plate_3_G3_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_G3


title: Dec.Plate_3_G12_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_G12


title: Dec.Plate_3_G1_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_G1


title: Dec.Plate_3_F9_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_F9


title: Dec.Plate_3_G2_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_G2


title: Dec.Plate_3_G11_GC_DP_60H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_G11


title: Dec.Plate_3_G10_GC_DP_60H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_G10


title: Dec.Plate_3_F12_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_F12


title: Dec.Plate_3_F10_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_F10


title: Dec.Plate_3_F8_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_F8


title: Dec.Plate_3_F6_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_F6


title: Dec.Plate_3_F7_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_F7


title: Dec.Plate_3_E8_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_E8


title: Dec.Plate_3_F5_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_F5


title: Dec.Plate_3_F11_GC_DP_60H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_F11


title: Dec.Plate_3_F3_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_F3


title: Dec.Plate_3_E7_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_E7


title: Dec.Plate_3_F2_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_F2


title: Dec.Plate_3_E9_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_E9


title: Dec.Plate_3_E1_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_E1


title: Dec.Plate_3_F4_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_F4


title: Dec.Plate_3_F1_GC_DP_30H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_F1


title: Dec.Plate_3_D9_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_D9


title: Dec.Plate_3_E10_GC_DP_60H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_E10


title: Dec.Plate_3_E5_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_E5


title: Dec.Plate_3_E4_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_E4


title: Dec.Plate_3_E3_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_E3


title: Dec.Plate_3_E6_GC_DP_30H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_E6


title: Dec.Plate_3_D8_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_D8


title: Dec.Plate_3_E11_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_E11


title: Dec.Plate_3_D4_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_D4


title: Dec.Plate_3_D6_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_D6


title: Dec.Plate_3_D7_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_D7


title: Dec.Plate_3_D5_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_D5


title: Dec.Plate_3_C9_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_C9


title: Dec.Plate_3_E12_GC_DP_60H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_E12


title: Dec.Plate_3_D3_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_D3


title: Dec.Plate_3_D2_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_D2


title: Dec.Plate_3_D11_GC_DP_46H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_D11


title: Dec.Plate_3_D10_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_D10


title: Dec.Plate_3_D12_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_D12


title: Dec.Plate_3_C5_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_C5


title: Dec.Plate_3_C7_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_C7


title: Dec.Plate_3_C2_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_C2


title: Dec.Plate_3_C12_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_C12


title: Dec.Plate_3_C8_GC_DP_46H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_C8


title: Dec.Plate_3_B9_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_B9


title: Dec.Plate_3_B3_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_B3


title: Dec.Plate_3_B2_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_B2


title: Dec.Plate_3_D1_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_D1


title: Dec.Plate_3_C10_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_C10


title: Dec.Plate_3_C6_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_C6


title: Dec.Plate_3_C1_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_C1


title: Dec.Plate_3_C3_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_C3


title: Dec.Plate_3_B8_GC_DP_46H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_B8


title: Dec.Plate_3_C11_GC_DP_46H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_C11


title: Dec.Plate_3_B10_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_B10


title: Dec.Plate_3_B5_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_B5


title: Dec.Plate_3_B6_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_B6


title: Dec.Plate_3_B7_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_B7


title: Dec.Plate_3_B4_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_B4


title: Dec.Plate_3_C4_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_C4


title: Dec.Plate_3_B11_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_B11


title: Dec.Plate_3_A7_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_A7


title: Dec.Plate_3_A8_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_A8


title: Dec.Plate_3_A9_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_A9


title: Dec.Plate_3_A1_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_A1


title: Dec.Plate_3_A6_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_A6


title: Dec.Plate_3_B1_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_B1


title: DEC_DZ_60h4_H12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H12


title: DEC_DZ_60h4_H11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H11


title: Dec.Plate_3_A11_GC_DP_46H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_A11


title: Dec.Plate_3_A12_GC_DP_46H_u

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_A12


title: Dec.Plate_3_B12_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_B12


title: Dec.Plate_3_A5_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_A5


title: DEC_DZ_60h4_H09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H09


title: Dec.Plate_3_E2_GC_DP_30H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_E2


title: DEC_DZ_60h4_H03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H03


title: Dec.Plate_3_A10_GC_DP_46H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_A10


title: DEC_DZ_60h4_H05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H05


title: DEC_DZ_60h4_G09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G09


title: DEC_DZ_60h4_H10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H10


title: DEC_DZ_60h4_H08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H08


title: DEC_DZ_60h4_H06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H06


title: DEC_DZ_60h4_H04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H04


title: DEC_DZ_60h4_G07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G07


title: Dec.Plate_3_A3_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_A3


title: DEC_DZ_60h4_H07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H07


title: Dec.Plate_3_A2_GC_DP_12H_LZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_A2


title: DEC_DZ_60h4_H02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H02


title: Dec.Plate_3_A4_GC_DP_12H_DZ

description:
3dec_04192019-scRNAseq.txt.gz
Dec.Plate_3_A4


title: DEC_DZ_60h4_F10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F10


title: DEC_DZ_60h4_G12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G12


title: DEC_DZ_60h4_G11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G11


title: DEC_DZ_60h4_G10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G10


title: DEC_DZ_60h4_F09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F09


title: DEC_DZ_60h4_F07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F07


title: DEC_DZ_60h4_H01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H01


title: DEC_DZ_60h4_F05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F05


title: DEC_DZ_60h4_G08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G08


title: DEC_DZ_60h4_F04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F04


title: DEC_DZ_60h4_F03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F03


title: DEC_DZ_60h4_G06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G06


title: DEC_DZ_60h4_G02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G02


title: DEC_DZ_60h4_G03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G03


title: DEC_DZ_60h4_G05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G05


title: DEC_DZ_60h4_G04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G04


title: DEC_DZ_60h4_G01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G01


title: DEC_DZ_60h4_E10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E10


title: DEC_DZ_60h4_F12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F12


title: DEC_DZ_60h4_E07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E07


title: DEC_DZ_60h4_F08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F08


title: DEC_DZ_60h4_F11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F11


title: DEC_DZ_60h4_F02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F02


title: DEC_DZ_60h4_E05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E05


title: DEC_DZ_60h4_E12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E12


title: DEC_DZ_60h4_F01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F01


title: DEC_DZ_60h4_E11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E11


title: DEC_DZ_60h4_E06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E06


title: DEC_DZ_60h4_E02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E02


title: DEC_DZ_60h4_E08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E08


title: DEC_DZ_60h4_F06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F06


title: DEC_DZ_60h4_E09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E09


title: DEC_DZ_60h4_D07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D07


title: DEC_DZ_60h4_E04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E04


title: DEC_DZ_60h4_E03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E03


title: DEC_DZ_60h4_D10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D10


title: DEC_DZ_60h4_D12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D12


title: DEC_DZ_60h4_D11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D11


title: DEC_DZ_60h4_D03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D03


title: DEC_DZ_60h4_D05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D05


title: DEC_DZ_60h4_D09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D09


title: DEC_DZ_60h4_C11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C11


title: DEC_DZ_60h4_C10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C10


title: DEC_DZ_60h4_D06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D06


title: DEC_DZ_60h4_C04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C04


title: DEC_DZ_60h4_D04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D04


title: DEC_DZ_60h4_D02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D02


title: DEC_DZ_60h4_C01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C01


title: DEC_DZ_60h4_B12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B12


title: DEC_DZ_60h4_C12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C12


title: DEC_DZ_60h4_D08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D08


title: DEC_DZ_60h4_B10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B10


title: DEC_DZ_60h4_C09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C09


title: DEC_DZ_60h4_E01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E01


title: DEC_DZ_60h4_C06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C06


title: DEC_DZ_60h4_D01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D01


title: DEC_DZ_60h4_C05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C05


title: DEC_DZ_60h4_C03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C03


title: DEC_DZ_60h4_C07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C07


title: DEC_DZ_60h4_C02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C02


title: DEC_DZ_60h4_B04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B04


title: DEC_DZ_60h4_B06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B06


title: DEC_DZ_60h4_B03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B03


title: DEC_DZ_60h4_B01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B01


title: DEC_DZ_60h4_B08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B08


title: DEC_DZ_60h4_A12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A12


title: DEC_DZ_60h4_A11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A11


title: DEC_DZ_60h4_B05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B05


title: DEC_DZ_60h4_B07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B07


title: DEC_DZ_60h4_B02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B02


title: DEC_DZ_60h4_A04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A04


title: DEC_DZ_60h4_A03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A03


title: DEC_DZ_60h4_B09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B09


title: DEC_DZ_60h4_C08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C08


title: DEC_DZ_60h4_A01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A01


title: DEC_DZ_60h3_H09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H09


title: DEC_DZ_60h4_A08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A08


title: DEC_DZ_60h4_A09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A09


title: DEC_DZ_60h3_H07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H07


title: DEC_DZ_60h4_B11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B11


title: DEC_DZ_60h3_H10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H10


title: DEC_DZ_60h4_A07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A07


title: DEC_DZ_60h3_H04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H04


title: DEC_DZ_60h4_A05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A05


title: DEC_DZ_60h4_A02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A02


title: DEC_DZ_60h4_A06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A06


title: DEC_DZ_60h3_H11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H11


title: DEC_DZ_60h4_A10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A10


title: DEC_DZ_60h3_H12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H12


title: DEC_DZ_60h3_H06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H06


title: DEC_DZ_60h3_H08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H08


title: DEC_DZ_60h3_H05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H05


title: DEC_DZ_60h3_G11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G11


title: DEC_DZ_60h3_G09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G09


title: DEC_DZ_60h3_H01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H01


title: DEC_DZ_60h3_G06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G06


title: DEC_DZ_60h3_G10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G10


title: DEC_DZ_60h3_G07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G07


title: DEC_DZ_60h3_G08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G08


title: DEC_DZ_60h3_G03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G03


title: DEC_DZ_60h3_H03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H03


title: DEC_DZ_60h3_G01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G01


title: DEC_DZ_60h3_F10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F10


title: DEC_DZ_60h3_F06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F06


title: DEC_DZ_60h3_F05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F05


title: DEC_DZ_60h3_G05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G05


title: DEC_DZ_60h3_G02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G02


title: DEC_DZ_60h3_F03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F03


title: DEC_DZ_60h3_G04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G04


title: DEC_DZ_60h3_F11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F11


title: DEC_DZ_60h3_F02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F02


title: DEC_DZ_60h3_H02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H02


title: DEC_DZ_60h3_F08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F08


title: DEC_DZ_60h3_F01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F01


title: DEC_DZ_60h3_F07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F07


title: DEC_DZ_60h3_F09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F09


title: DEC_DZ_60h3_G12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G12


title: DEC_DZ_60h3_E12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E12


title: DEC_DZ_60h3_E10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E10


title: DEC_DZ_60h3_E07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E07


title: DEC_DZ_60h3_E08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E08


title: DEC_DZ_60h3_E05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E05


title: DEC_DZ_60h3_E06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E06


title: DEC_DZ_60h3_F12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F12


title: DEC_DZ_60h3_E03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E03


title: DEC_DZ_60h3_E11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E11


title: DEC_DZ_60h3_E04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E04


title: DEC_DZ_60h3_E01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E01


title: DEC_DZ_60h3_D11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D11


title: DEC_DZ_60h3_F04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F04


title: DEC_DZ_60h3_D10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D10


title: DEC_DZ_60h3_D09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D09


title: DEC_DZ_60h3_D08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D08


title: DEC_DZ_60h3_D07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D07


title: DEC_DZ_60h3_D04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D04


title: DEC_DZ_60h3_D02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D02


title: DEC_DZ_60h3_D05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D05


title: DEC_DZ_60h3_D03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D03


title: DEC_DZ_60h3_D01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D01


title: DEC_DZ_60h3_D06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D06


title: DEC_DZ_60h3_E09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E09


title: DEC_DZ_60h3_C10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C10


title: DEC_DZ_60h3_C08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C08


title: DEC_DZ_60h3_C12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C12


title: DEC_DZ_60h3_C07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C07


title: DEC_DZ_60h3_C09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C09


title: DEC_DZ_60h3_C06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C06


title: DEC_DZ_60h3_C05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C05


title: DEC_DZ_60h3_E02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E02


title: DEC_DZ_60h3_C04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C04


title: DEC_DZ_60h3_C03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C03


title: DEC_DZ_60h3_C02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C02


title: DEC_DZ_60h3_D12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D12


title: DEC_DZ_60h3_C01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C01


title: DEC_DZ_60h3_B12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B12


title: DEC_DZ_60h3_B10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B10


title: DEC_DZ_60h3_B11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B11


title: DEC_DZ_60h3_B09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B09


title: DEC_DZ_60h3_B08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B08


title: DEC_DZ_60h3_B07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B07


title: DEC_DZ_60h3_B06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B06


title: DEC_DZ_60h3_C11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C11


title: DEC_DZ_60h3_B05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B05


title: DEC_DZ_60h3_B03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B03


title: DEC_DZ_60h3_B04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B04


title: DEC_DZ_60h3_B02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B02


title: DEC_DZ_60h3_A12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A12


title: DEC_DZ_60h3_B01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B01


title: DEC_DZ_60h3_A09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A09


title: DEC_DZ_60h3_A10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A10


title: DEC_DZ_60h3_A07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A07


title: DEC_DZ_60h3_A11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A11


title: DEC_DZ_60h3_A06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A06


title: DEC_DZ_60h3_A08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A08


title: DEC_DZ_60h3_A03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A03


title: DEC_DZ_60h3_A02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A02


title: DEC_DZ_60h3_A04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A04


title: DEC_DZ_60h3_A05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A05


title: DEC_DZ_60h3_A01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A01


title: DEC_DZ_30h4_H10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H10


title: DEC_DZ_30h4_H11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H11


title: DEC_DZ_30h4_H09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H09


title: DEC_DZ_30h4_H04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H04


title: DEC_DZ_30h4_H05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H05


title: DEC_DZ_30h4_H06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H06


title: DEC_DZ_30h4_H08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H08


title: DEC_DZ_30h4_H07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H07


title: DEC_DZ_30h4_H02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H02


title: DEC_DZ_30h4_H03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H03


title: DEC_DZ_30h4_H01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H01


title: DEC_DZ_30h4_G11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G11


title: DEC_DZ_30h4_G09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G09


title: DEC_DZ_30h4_G10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G10


title: DEC_DZ_30h4_G12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G12


title: DEC_DZ_30h4_G07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G07


title: DEC_DZ_30h4_G06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G06


title: DEC_DZ_30h4_G08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G08


title: DEC_DZ_30h4_G01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G01


title: DEC_DZ_30h4_F10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F10


title: DEC_DZ_30h4_H12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_H12


title: DEC_DZ_30h4_G03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G03


title: DEC_DZ_30h4_F12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F12


title: DEC_DZ_30h4_G05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G05


title: DEC_DZ_30h4_F09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F09


title: DEC_DZ_30h4_G02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G02


title: DEC_DZ_30h4_F06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F06


title: DEC_DZ_30h4_F11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F11


title: DEC_DZ_30h4_F04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F04


title: DEC_DZ_30h4_F08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F08


title: DEC_DZ_30h4_F05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F05


title: DEC_DZ_30h4_E12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E12


title: DEC_DZ_30h4_F01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F01


title: DEC_DZ_30h4_F07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F07


title: DEC_DZ_30h4_E09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E09


title: DEC_DZ_30h4_E08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E08


title: DEC_DZ_30h4_F03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F03


title: DEC_DZ_30h4_F02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_F02


title: DEC_DZ_30h4_G04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_G04


title: DEC_DZ_30h4_E10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E10


title: DEC_DZ_30h4_E07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E07


title: DEC_DZ_30h4_E06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E06


title: DEC_DZ_30h4_E02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E02


title: DEC_DZ_30h4_E01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E01


title: DEC_DZ_30h4_E03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E03


title: DEC_DZ_30h4_D12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D12


title: DEC_DZ_30h4_E04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E04


title: DEC_DZ_30h4_D11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D11


title: DEC_DZ_30h4_D10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D10


title: DEC_DZ_30h4_D07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D07


title: DEC_DZ_30h4_D08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D08


title: DEC_DZ_30h4_D09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D09


title: DEC_DZ_30h4_D06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D06


title: DEC_DZ_30h4_E11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E11


title: DEC_DZ_30h4_D04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D04


title: DEC_DZ_30h4_D05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D05


title: DEC_DZ_30h4_D01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D01


title: DEC_DZ_30h4_D02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D02


title: DEC_DZ_30h4_C12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C12


title: DEC_DZ_30h4_D03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_D03


title: DEC_DZ_30h4_C10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C10


title: DEC_DZ_30h4_C11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C11


title: DEC_DZ_30h4_C09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C09


title: DEC_DZ_30h4_E05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_E05


title: DEC_DZ_30h4_C06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C06


title: DEC_DZ_30h4_C07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C07


title: DEC_DZ_30h4_C04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C04


title: DEC_DZ_30h4_C05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C05


title: DEC_DZ_30h4_C02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C02


title: DEC_DZ_30h4_C03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C03


title: DEC_DZ_30h4_C08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C08


title: DEC_DZ_30h4_B11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B11


title: DEC_DZ_30h4_B10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B10


title: DEC_DZ_30h4_B12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B12


title: DEC_DZ_30h4_B09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B09


title: DEC_DZ_30h4_B07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B07


title: DEC_DZ_30h4_B06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B06


title: DEC_DZ_30h4_B08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B08


title: DEC_DZ_30h4_B02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B02


title: DEC_DZ_30h4_B05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B05


title: DEC_DZ_30h4_B04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B04


title: DEC_DZ_30h4_B03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B03


title: DEC_DZ_30h4_A11

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A11


title: DEC_DZ_30h4_B01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_B01


title: DEC_DZ_30h4_A07

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A07


title: DEC_DZ_30h4_A09

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A09


title: DEC_DZ_30h4_A08

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A08


title: DEC_DZ_30h4_A10

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A10


title: DEC_DZ_30h4_A12

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A12


title: DEC_DZ_30h4_A06

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A06


title: DEC_DZ_30h4_A04

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A04


title: DEC_DZ_30h4_C01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_C01


title: PD08_pooled

city: Seoul

first: Hye Hyeon

last: Eum

address: 222, Banpo-daero, Seocho-gu

country: South Korea

institute: The Catholic University of Korea

description:
pooled cell
PD_processed_TPM_matrix.txt
PD_cell_information.txt

data_processing:
The sequenced reads were aligned to the UCSC hg19 human reference genome using the 2-pass mode of STAR_2.4.0b with default parameters, and transcript per million (TPM) value of the gene was quantified using RSEM v1.2.17 with default parameters.
The TPMij value for gene i in cell j was derived by summing the TPM values of the isoforms of gene i.
To reduce the inflation effect of TPM calculations on gene expression levels, we defined Eij = log2 (TPMij / 10 + 1) as the gene expression value
Unreliable cells expressing less than 1,000 genes and unreliable genes expressed in less than 10 cells were excluded from further analysis. When filtering cells or genes, Eij > 1 was considered as the confident expression.
Genome_build: hg19
Supplementary_files_format_and_content: Tab-deliminated text file containing the log2 (TPM / 10 + 1) values for gene expression levels.

molecule: polyA RNA

organism: Homo sapiens

source_name: Peritoneal dialysate

extract_protocol:
We obtained peritoneal dialysates (PD) from three donors without cancer. Suspending cells were collected by centrifuge. Single-cell transcriptome data were prepared using the C1 Single-Cell Auto Prep System following the manufacturer’s instruction. Freshly prepared cell suspensions were loaded onto the C1 system and amplified cDNAs were obtained as the product. The microfluidic chip type used in the C1 system was determined by the size distribution and average cell size of each sample. We quantified amplified cDNAs using a Qubit® 2.0 Fluorometer then qualified using 2100 Bioanalyzer. Successfully amplified 25 single-cell cDNAs were subjected to RNA sequencing.
Sequencing libraries were constructed with the Nextera XT DNA Sample Prep Kit and sequenced by the HiSeq2500 system in 100-bp paired-end mode using the TruSeq Rapid PE Cluster kit and the TruSeq Rapid SBS kit.

tag: cell type

value: Peritoneal dialysate

tag: patient

tag: disease state

value: healthy


title: DEC_DZ_30h4_A01

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A01


title: PD08_62

description:
single cell
PD_processed_TPM_matrix.txt
PD_cell_information.txt


title: PD08_03


title: PD08_15


title: PD08_05


title: PD08_91


title: PD08_10


title: PD08_81


title: DEC_DZ_30h4_A03

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A03


title: PD08_36


title: PD04_80


title: PD08_43


title: DEC_DZ_30h4_A02

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A02


title: PD04_pooled


title: PD04_58


title: PD08_33


title: PD04_02


title: PD04_03


title: PD01_88


title: PD01_35


title: PD01_25


title: PD01_89


title: PD04_55


title: DEC_DZ_30h4_A05

description:
2dec_04092017-scRNAseq.txt.gz
DEC_DZ_A05


title: PD08_25


title: PD01_01


title: PD04_83


title: PD08_83


title: PD01_30


title: PD01_27


title: Donor2.M2_45

description:
single cell
M1M2_processed_TPM_matrix.txt
M1M2_raw_TPM_matrix.txt
M1M2_processed_expected_count_matrix.txt
M1M2_raw_expected_count_matrix.txt

data_processing:
The sequenced reads were aligned to the UCSC hg19 human reference genome using the 2-pass mode of STAR_2.4.0b with default parameters, and transcript per million (TPM) value of the gene was quantified using RSEM v1.2.17 with default parameters.
The TPMij value for gene i in cell j was derived by summing the TPM values of the isoforms of gene i.
To reduce the inflation effect of TPM calculations on gene expression levels, we defined Eij = log2 (TPMij / 10 + 1) as the gene expression value
Unreliable cells expressing less than 1,000 genes and unreliable genes expressed in less than 10 cells were excluded from further analysis. When filtering cells or genes, Eij > 1 was considered as the confident expression.
Genome_build: hg19
Supplementary_files_format_and_content: Tab-deliminated text file containing the 'raw expected_count' or 'raw TPM' values for gene expression levels.

source_name: CD14+ monocytes

extract_protocol:
We obtained four peritoneal ascites and one cerebrospinal fluid (AGC04CSF) aspirated for the treatment purpose. Suspending cells were collected by centrifuge. To construct reference M1 or M2 type macrophages, fresh PBMCs of two healthy donors were separated from whole blood samples by Ficoll-Paque. Only CD14+ monocytes were selected out using MACS human CD14 MicroBeads, Pre-Separation Filters, and LS columns as following the manufacture’s recommend. To induce M0 macrophages, firstly isolated CD14+ monocytes were seeded into FBS coated 24-well plate with a density of 1 × 105 cells/cm2. Seeded cells were cultured 7 days in RPMI1640 media supplied with 20% of FBS and 100ng/ml of M-CSF. At day 7, M-CSF containing media were removed and appropriate stimulating media with 100ng/ml LPS and 20ng/ml IFN-γ for M1 or 20ng/ml IL-4 and 20ng/ml IL-10 for M2 were supplied. Fully differentiated M1 or M2 cells were collected by smooth scrapping after additional 48 hour of culture. Single-cell transcriptome data for AGC and M1/M2 macrophages were prepared using the C1 Single-Cell Auto Prep System following the manufacturer’s instruction. Freshly prepared cell suspensions were loaded onto the C1 system and amplified cDNAs were obtained as the product. The microfluidic chip type used in the C1 system was determined by the size distribution and average cell size of each sample. We quantified amplified cDNAs using a Qubit® 2.0 Fluorometer then qualified using 2100 Bioanalyzer . Successfully amplified single-cell cDNAs (from 180 cells of AGC, 97 of M1 and 45 of M2) were respectively subjected to RNA sequencing.
Sequencing libraries were constructed with the Nextera XT DNA Sample Prep Kit and sequenced by the HiSeq2500 system in 100-bp paired-end mode using the TruSeq Rapid PE Cluster kit and the TruSeq Rapid SBS kit.

value: CD14+ monocytes

value: Healthy donor


title: Donor2.M2_54


title: Donor2.M2_49


title: Donor2.M2_48


title: Donor2.M2_41


title: Donor2.M2_62


title: Donor2.M2_39


title: Donor2.M2_44


title: Donor2.M2_51


title: Donor2.M2_40


title: Donor2.M2_33


title: Donor2.M2_18


title: Donor2.M2_14


title: Donor2.M2_21


title: Donor2.M2_25


title: Donor2.M2_11


title: Donor2.M2_42


title: Donor2.M2_24


title: Donor2.M2_10


title: Donor2.M2_08


title: Donor2.M2_76


title: Donor2.M2_02


title: Donor2.M2_01


title: Donor2.M2_Pooled

description:
pooled cell
M1M2_processed_TPM_matrix.txt
M1M2_raw_TPM_matrix.txt
M1M2_processed_expected_count_matrix.txt
M1M2_raw_expected_count_matrix.txt


title: AGC04_10x

description: single cell

data_processing:
Fastq data was processed using the CellRanger-2.1 pipeline (10x Genomics) with GRCh38 human reference genome.
The filtered gene expression matrix from the CellRanger were analyzed by the ‘Seurat’ R package v4.0.2.
Before the downstream analysis, low quality cells with nFeature_RNA < 200, nFeature_RNA > 10,000, or mitocondrial gene expression > 20% were excluded.
For the remaining cells and genes, the UMI count matrix was log-normalized and scaled before use.
Genome_build: GRCh38
Supplementary_files_format_and_content: Tab-deliminated text files (.txt) containing the UMI count values for gene expression levels.

source_name: malignant ascites

extract_protocol:
We obtained the peritoneal ascites from gastric cancer patient (AGC04) for the treatment purpose. Suspending cells were collected by centrifuge. Single-cell transcriptome data were prepared using the 10x Genomics Chromium System following the manufacturer’s instruction. Constructed single-cell cDNA library was subjected to RNA sequencing.
Sequencing libraries for cDNA from RNAs were constructed using the Chromium Single Cell 3’ Library & Gel Bead Kit (v3). Constructed libraries were sequenced on a HiSeq2500 system (Illumina) using the 100 base-pair paired end mode.

value: malignant ascites

value: gastric cancer


title: Donor2.M1_Pooled


title: Donor2.M2_43


title: Donor2.M2_22


title: Donor2.M1_96


title: Donor2.M2_30


title: Donor2.M1_94


title: Donor2.M2_27


title: Donor2.M1_93


title: Donor2.M1_92


title: Donor2.M1_90


title: Donor2.M1_83


title: Donor2.M1_84


title: Donor2.M1_80


title: Donor2.M1_82


title: Donor2.M1_72


title: Donor2.M1_88


title: Donor2.M1_87


title: Donor2.M1_89


title: Donor2.M1_71


title: Donor2.M1_64


title: Donor2.M1_63


title: Donor2.M1_68


title: Donor2.M1_61


title: Donor2.M1_59


title: Donor2.M1_54


title: Donor2.M1_52


title: Donor2.M1_50


title: Donor2.M1_51


title: Donor2.M1_95


title: Donor2.M1_49


title: Donor2.M1_48


title: Donor2.M1_44


title: Donor2.M1_47


title: Donor2.M1_40


title: Donor2.M1_79


title: Donor2.M1_43


title: Donor2.M1_37


title: Donor2.M1_35


title: Donor2.M1_32


title: Donor2.M1_38


title: Donor2.M1_31


title: Donor2.M1_24


title: Donor2.M1_23


title: Donor2.M1_29


title: Donor2.M1_22


title: Donor2.M1_28


title: Donor2.M1_27


title: Donor2.M1_20


title: Donor2.M1_19


title: Donor2.M1_26


title: Donor2.M1_15


title: Donor2.M1_14


title: Donor2.M1_21


title: Donor2.M1_11


title: Donor2.M1_13


title: Donor2.M1_09


title: Donor2.M1_17


title: Donor2.M1_05


title: Donor2.M1_34


title: Donor2.M1_04


title: Donor2.M1_03


title: Donor1.M2_93


title: Donor1.M2_94


title: Donor2.M1_02


title: Donor2.M1_18


title: Donor1.M2_85


title: Donor1.M2_77


title: Donor1.M2_88


title: Donor1.M2_83


title: Donor1.M2_64


title: Donor1.M2_62


title: Donor1.M2_72


title: Donor1.M2_70


title: Donor1.M2_14


title: Donor1.M2_54


title: Donor1.M2_49


title: Donor1.M2_09


title: Donor1.M2_06


title: Donor1.M1_95


title: Donor1.M1_93


title: Donor2.M1_01


title: Donor1.M1_94


title: Donor1.M1_92


title: Donor1.M2_92


title: Donor1.M1_87


title: Donor1.M1_89


title: Donor1.M1_84


title: Donor1.M1_80


title: Donor1.M2_90


title: Donor1.M1_76


title: Donor1.M1_78


title: Donor1.M1_73


title: Donor1.M1_74


title: Donor1.M2_58


title: Donor1.M1_72


title: Donor1.M1_71


title: Donor1.M1_67


title: Donor1.M1_66


title: Donor1.M1_52


title: Donor1.M1_51


title: Donor1.M1_63


title: Donor1.M1_62


title: Donor1.M1_50


title: Donor1.M1_45


title: Donor1.M1_38


title: Donor1.M1_43


title: Donor1.M1_24


title: Donor1.M1_25


title: Donor1.M1_30


title: Donor1.M1_18


title: Donor1.M1_19


title: Donor1.M1_17


title: Donor1.M1_13


title: Donor1.M1_14


title: Donor1.M1_16


title: Donor1.M1_07


title: AGC05_Pooled

description:
pooled cell
AGC_processed_TPM_matrix.txt
AGC_raw_TPM_matrix.txt

source_name: Malignant ascites of AGC

value: Malignant ascites of AGC

value: advanced gastric cancer


title: AGC05_94

description:
single cell
AGC_processed_TPM_matrix.txt
AGC_raw_TPM_matrix.txt


title: AGC05_95


title: AGC05_91


title: AGC05_90


title: Donor1.M1_64


title: AGC05_89


title: Donor1.M1_70


title: Donor1.M1_01


title: AGC05_88


title: AGC05_78


title: AGC05_84


title: Donor1.M1_33


title: AGC05_71


title: AGC05_72


title: AGC05_70


title: AGC05_68


title: AGC05_66


title: AGC05_67


title: AGC05_62


title: AGC05_61


title: AGC05_54


title: AGC05_58


title: AGC05_65


title: AGC05_51


title: AGC05_20


title: AGC05_87


title: AGC05_44


title: AGC05_34


title: AGC05_03


title: AGC05_12


title: AGC05_15


title: AGC05_74


title: AGC05_31


title: AGC05_81


title: AGC04CSF_96

source_name: Cerebrospinal metastasis of AGC

value: Cerebrospinal metastasis of AGC


title: AGC04CSF_95


title: AGC05_79


title: AGC04CSF_92


title: AGC04CSF_90


title: AGC04CSF_91


title: AGC04CSF_88


title: AGC04CSF_87


title: AGC04CSF_84


title: AGC04CSF_85


title: AGC04CSF_77


title: AGC04CSF_72


title: AGC04CSF_71


title: AGC04CSF_69


title: AGC04CSF_68


title: AGC04CSF_Pooled


title: AGC04CSF_65


title: AGC04CSF_60


title: AGC04CSF_54


title: AGC04CSF_55


title: AGC04CSF_43


title: AGC04CSF_52


title: AGC04CSF_44


title: AGC04CSF_40


title: AGC04CSF_39


title: AGC04CSF_24


title: AGC04CSF_38


title: AGC04CSF_23


title: AGC04CSF_21


title: AGC04CSF_16


title: AGC04CSF_19


title: AGC04CSF_07


title: AGC04CSF_05


title: AGC04CSF_04


title: AGC05_22


title: AGC04CSF_01


title: AGC04_Pooled


title: AGC04_84


title: AGC04_92


title: AGC04_85


title: AGC04_81


title: AGC04_79


title: AGC04_76


title: AGC04_82


title: AGC04_78


title: AGC04_86


title: AGC04_74


title: AGC04_69


title: AGC04_62


title: AGC04_56


title: AGC04CSF_10


title: AGC04_68


title: AGC04_71


title: AGC04_60


title: AGC04_53


title: AGC05_01


title: AGC04_51


title: AGC04_50


title: AGC04_43


title: AGC04_44


title: AGC04_87


title: AGC04_36


title: AGC04_35


title: AGC04_33


title: AGC04_22


title: AGC04_27


title: AGC04_29


title: AGC04_24


title: AGC04_21


title: AGC04_19


title: AGC04_57


title: AGC04_13


title: AGC04_17


title: AGC04_16


title: AGC04_08


title: AGC04_03


title: AGC04_01


title: AGC02_Pooled


title: AGC02_96


title: AGC02_90


title: AGC02_88


title: AGC02_94


title: AGC02_86


title: AGC02_81


title: AGC02_82


title: AGC02_83


title: AGC02_87


title: AGC02_77


title: AGC02_80


title: AGC02_75


title: AGC02_76


title: AGC02_73


title: AGC02_74


title: AGC02_72


title: AGC02_66


title: AGC02_60


title: AGC02_58


title: AGC02_56


title: AGC02_57


title: AGC02_92


title: AGC02_59


title: AGC02_52


title: AGC02_50


title: AGC02_84


title: AGC02_45


title: AGC02_43


title: AGC02_44


title: AGC02_37


title: AGC02_35


title: AGC02_26


title: AGC02_18


title: AGC02_15


title: AGC02_28


title: AGC02_22


title: AGC02_34


title: AGC02_05


title: AGC02_04


title: AGC02_11


title: AGC02_16


title: AGC02_07


title: AGC02_02


title: AGC02_01


title: AGC02_03


title: AGC02_46


title: AGC01_89


title: AGC01_90


title: AGC01_Pooled


title: AGC01_88


title: AGC01_86


title: AGC01_83


title: AGC01_87


title: AGC01_65


title: AGC01_72


title: AGC01_64


title: AGC02_33


title: AGC01_63


title: AGC01_61


title: AGC01_52


title: AGC01_33


title: AGC01_04


title: AGC01_35


title: AGC01_02


title: AGC01_14


title: AGC01_28


title: AGC01_05


title: AGC01_29


title: AGC01_25


title: AGC01_39


title: AGC01_50


title: AGC01_31


title: AGC01_26


title: AGC05_08


title: RAL-045_brain_T=6h4m_Rep1

city: Lausanne

first: Bart

last: Deplancke

state: Vaud

address: EPFL-SV-IBI-UPDEPLA, Station 19

department: Biology

country: Switzerland

institute: École polytechnique fédérale de Lausanne (EPFL)

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_n_28128

data_processing:
Multiple fastq files for each library were merged by samtools v1.3,
after which they were subjected to demultiplexing using BRB-seq tools v1.1.
Then samples were mapped to the reference genome using STAR v.2.5.0b in the alignReads mode with the following parameters: --outFilterScoreMinOverLread 0.20, --outFilterMatchNminOverLread 0.20, --outFilterMultimapNmax 1.
RefSeq Genes annotation track (UCSC, annotation database for dm3) was used to index the reference genome.
Samtools was used to remove reads with an insert size > 1kb.
Number of reads falling into each of the 16,995 genes was counted using the Python package HTSeq v0.6.1
Samples with < 300,000 reads assigned to the genes (no feature, ambiguous, low quality, not aligned or mapped to the multiple locations reads were not considered) were excluded from the analysis
Genes, expressed in less than 80% of the samples were removed from the analysis.
The count table was quantile normalized with the voom function from the limma v3.32.5 package.
Batch effects from different libraries were removed with ComBat from SVA v3.24.4 package.
Genome_build: dm3, UCSC, BDGP Release 5, Apr 2006
Supplementary_files_format_and_content: *.csv.gz with raw (integer) count values for each sample as well as quantile-normalized and batch corrected counts:
raw_counts_all_samples: raw (integer) counts for all samples
w1118_time_series_brain_norm: normalized by voom and batch corrected by Combat counts for brain samples of the reference w1118 time series
w1118_time_series_fatbody_norm: normalized by voom and batch corrected by Combat counts for fat body samples of the reference w1118 time series
w1118_time_series_gut_norm: normalized by voom and batch corrected by Combat counts for gut samples of the reference w1118 time series
w1118_time_series_malpighiantubules_norm: normalized by voom and batch corrected by Combat counts for malpighiantubules samples of the reference w1118 time series
w1118_time_series_all_DGRPs_brain_norm: normalized by voom and batch corrected by Combat counts for brain samples of the reference w1118 time series and all DGRP samples
w1118_time_series_all_DGRPs_fatbody_norm: normalized by voom and batch corrected by Combat counts for fat body samples of the reference w1118 time series and all DGRP samples
w1118_time_series_all_DGRPs_gut_norm: normalized by voom and batch corrected by Combat counts for gut samples of the reference w1118 time series and all DGRP samples
DGRP-796_time_series_brain_norm: normalized by voom and batch corrected by Combat counts for brain samples of the DGRP-796 time series
DGRP-796_time_series_gut_norm: normalized by voom and batch corrected by Combat counts for fat body samples of theDGRP-796 time series
w1118_and_DGRP-796_time_series_brain_norm: normalized by voom and batch corrected by Combat counts for brain samples of the reference w1118 time series and DGRP-796 time series
w1118_and_DGRP-796_time_series_gut_norm: normalized by voom and batch corrected by Combat counts for gut samples of the reference w1118 time series and DGRP-796 time series

organism: Drosophila melanogaster

growth_protocol: Flies were raised on standard food at 25 °C and under 12 hours light: 12 hours dark (LD) cycles.

extract_protocol:
Standart Trizol extraction was performed, followed by Direct-zol™-96 RNA Purification (Zymo Resaearch) RNA purification
BRB-seq libraries were prepared according to Alpern et al 2019

tag: strain

tag: tissue

value: whole brain

tag: time of harvesting

tag: replicate

tag: library

tag: bloomington

tag: time series type

value: Single observation


title: RAL-136_brain_T=7h50m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_n_28142


title: RAL-038_brain_T=5h45m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_n_28125


title: RAL-059_brain_T=6h14m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_n_28129


title: RAL-069_brain_T=6h24m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_n_28130


title: RAL-088_brain_T=6h52m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_n_28135


title: RAL-109_brain_T=7h31m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_n_28140


title: RAL-075_brain_T=6h33m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_n_28132


title: RAL-091_brain_T=7h2m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_n_28136


title: RAL-041_brain_T=5h55m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_n_28126


title: RAL-028_brain_T=5h36m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_n_28124


title: RAL-026_brain_T=5h26m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_n_28123


title: RAL-101_brain_T=7h12m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_n_28138


title: RAL-365_brain_T=4h57m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_n_25445


title: RAL-021_brain_T=5h16m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_n_28122


title: RAL-786_brain_T=4h28m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_n_25206


title: RAL-852_brain_T=4h48m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_n_25209


title: RAL-774_brain_T=4h19m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_n_25205


title: RAL-486_brain_T=3h12m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_n_25195


title: RAL-820_brain_T=4h38m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_n_25208


title: RAL-712_brain_T=3h40m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_n_25201


title: RAL-732_brain_T=4h0m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_n_25203


title: RAL-399_brain_T=2h43m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_n_25192


title: RAL-380_brain_T=2h24m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_n_25190


title: RAL-375_brain_T=2h4m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_n_25188


title: RAL-379_brain_T=2h14m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_n_25189


title: RAL-362_brain_T=1h55m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_n_25187


title: RAL-360_brain_T=1h45m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_n_25186


title: RAL-208_brain_T=0h0m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_n_25174


title: RAL-313_brain_T=0h48m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_n_25180


title: RAL-335_brain_T=1h16m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_n_25183


title: RAL-774_gut_T=ZT23_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB4_Gut_ZT23_25205

value: whole gut

value: Time-series for RAL-774


title: RAL-774_gut_T=ZT13_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB5_Gut_ZT13_25205


title: RAL-301_brain_T=0h9m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_n_25175


title: RAL-774_gut_T=ZT9_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB5_Gut_ZT9_25205


title: RAL-774_gut_T=ZT21_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB5_Gut_ZT21_25205


title: RAL-324_brain_T=1h7m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_n_25182


title: RAL-427_brain_T=2h52m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_n_25193


title: RAL-774_gut_T=ZT1_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB4_Gut_ZT1_25205


title: RAL-303_brain_T=0h19m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_n_25176


title: RAL-774_fatBody_T=ZT23_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB3_FB_ZT23_25205

value: whole fat body


title: RAL-774_gut_T=ZT11_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB5_Gut_ZT11_25205


title: RAL-304_brain_T=0h28m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_n_25177


title: RAL-774_fatBody_T=ZT19_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB1_FB_ZT19_25205


title: RAL-774_fatBody_T=ZT17_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB3_FB_ZT17_25205


title: RAL-315_brain_T=0h57m_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_n_25181


title: RAL-774_fatBody_T=ZT15_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB1_FB_ZT15_25205


title: RAL-774_fatBody_T=ZT21_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB2_FB_ZT21_25205


title: AGC04_58

description:
single cell
AGC_processed_TPM_matrix.txt
AGC_raw_TPM_matrix.txt


title: RAL-774_fatBody_T=ZT13_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB2_FB_ZT13_25205


title: RAL-774_fatBody_T=ZT9_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB1_FB_ZT9_25205


title: RAL-774_fatBody_T=ZT7_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB1_FB_ZT7_25205


title: RAL-774_fatBody_T=ZT5_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB1_FB_ZT5_25205


title: RAL-774_fatBody_T=ZT3_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB2_FB_ZT3_25205


title: RAL-774_fatBody_T=ZT1_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB2_FB_ZT1_25205


title: RAL-774_gut_T=ZT3_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB5_Gut_ZT3_25205


title: AGC02_67


title: RAL-774_brain_T=ZT23_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_ZT23_25205


title: RAL-774_brain_T=ZT21_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_ZT21_25205


title: RAL-774_brain_T=ZT19_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_ZT19_25205


title: RAL-774_brain_T=ZT11_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_ZT11_25205


title: RAL-774_brain_T=ZT7_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_ZT7_25205


title: RAL-774_brain_T=ZT3_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_ZT3_25205


title: RAL-774_brain_T=ZT5_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_ZT5_25205


title: RAL-563_gut_T=ZT23_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB6_Gut_ZT23_28211

value: Time-series for RAL-563


title: RAL-563_gut_T=ZT15_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB6_Gut_ZT15_28211


title: RAL-563_gut_T=ZT19_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB5_Gut_ZT19_28211


title: RAL-563_gut_T=ZT17_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB4_Gut_ZT17_28211


title: RAL-774_brain_T=ZT1_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_ZT1_25205


title: RAL-563_gut_T=ZT13_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB5_Gut_ZT13_28211


title: RAL-563_gut_T=ZT9_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB4_Gut_ZT9_28211


title: RAL-563_fatBody_T=ZT21_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB3_FB_ZT21_28211


title: RAL-563_gut_T=ZT3_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB4_Gut_ZT3_28211


title: RAL-563_fatBody_T=ZT23_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB3_FB_ZT23_28211


title: RAL-563_fatBody_T=ZT17_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB2_FB_ZT17_28211


title: RAL-563_fatBody_T=ZT11_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB2_FB_ZT11_28211


title: RAL-563_fatBody_T=ZT13_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB2_FB_ZT13_28211


title: RAL-774_brain_T=ZT13_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_ZT13_25205


title: RAL-563_fatBody_T=ZT3_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB2_FB_ZT3_28211


title: RAL-563_fatBody_T=ZT7_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB2_FB_ZT7_28211


title: RAL-774_brain_T=ZT17_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_ZT17_25205


title: RAL-563_fatBody_T=ZT1_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB2_FB_ZT1_28211


title: RAL-563_fatBody_T=ZT9_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB3_FB_ZT9_28211


title: RAL-774_brain_T=ZT15_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_ZT15_25205


title: RAL-563_fatBody_T=ZT5_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB2_FB_ZT5_28211


title: RAL-563_brain_T=ZT21_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_ZT21_28211


title: RAL-563_brain_T=ZT19_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_ZT19_28211


title: RAL-563_gut_T=ZT5_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB5_Gut_ZT5_28211


title: RAL-563_brain_T=ZT23_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_ZT23_28211


title: RAL-563_fatBody_T=ZT15_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB1_FB_ZT15_28211


title: RAL-563_brain_T=ZT11_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_ZT11_28211


title: RAL-563_brain_T=ZT15_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_ZT15_28211


title: RAL-563_brain_T=ZT13_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_ZT13_28211


title: RAL-563_brain_T=ZT17_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_ZT17_28211


title: RAL-563_brain_T=ZT9_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_ZT9_28211


title: RAL-321_gut_T=ZT23_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB5_Gut_ZT23_29655

value: Time-series for RAL-321


title: RAL-321_gut_T=ZT21_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB4_Gut_ZT21_29655


title: RAL-563_brain_T=ZT1_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB8_Brain_ZT1_28211


title: RAL-563_brain_T=ZT5_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_ZT5_28211


title: RAL-563_brain_T=ZT3_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB9_Brain_ZT3_28211


title: RAL-321_gut_T=ZT19_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB6_Gut_ZT19_29655


title: RAL-321_gut_T=ZT17_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB6_Gut_ZT17_29655


title: RAL-321_gut_T=ZT13_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB4_Gut_ZT13_29655


title: RAL-321_gut_T=ZT11_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB5_Gut_ZT11_29655


title: RAL-563_brain_T=ZT7_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_brain_norm.csv.gz
BRB7_Brain_ZT7_28211


title: RAL-321_gut_T=ZT9_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB4_Gut_ZT9_29655


title: RAL-321_gut_T=ZT1_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB4_Gut_ZT1_29655


title: RAL-321_gut_T=ZT3_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB4_Gut_ZT3_29655


title: RAL-321_fatBody_T=ZT23_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB2_FB_ZT23_29655


title: RAL-321_fatBody_T=ZT19_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB1_FB_ZT19_29655


title: RAL-321_gut_T=ZT5_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB5_Gut_ZT5_29655


title: RAL-321_gut_T=ZT15_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_gut_norm.csv.gz
BRB6_Gut_ZT15_29655


title: RAL-321_fatBody_T=ZT17_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB3_FB_ZT17_29655


title: RAL-321_fatBody_T=ZT13_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB2_FB_ZT13_29655


title: RAL-321_fatBody_T=ZT9_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB2_FB_ZT9_29655


title: RAL-321_fatBody_T=ZT11_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB2_FB_ZT11_29655


title: RAL-321_fatBody_T=ZT7_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB2_FB_ZT7_29655


title: Untreated_rep3

city: Fort Collins

first: Jessica

middle: Marie

last: Warren

state: Colorado

address: Biology Building, 251 W Pitkin St.

institute: Colorado State University

data_processing:
Reads were trimmed with Cutadapt (ver.1.16) using the options: -q 10 --discard-untrimmed --nextseq-trim=20
Forward and reverse trimmed reads were merged using BBMerge (BBTool software package), with a minimum overlap of 20 bp and 0 mismatches.
Identical reads were summed and collapsed into read families using the FASTQ/A Collapser tool from the FASTX-Toolkitversion 0.0.13
The mapping of reads to reference tRNA gene set was done with previously published pipeline and Perl scripts (Warren, et al., 2020) which are available at https://github.com/warrenjessica/YAMAT-scripts.
Expression was calculated as counts per million mapped reads on a log10 scale after summing all mapped reads in  a library. Sense and antisense expression were defined relative to the prior T. urticae mitochondrial annotation in GenBank: KJ729022
Genome_build: GenBank: KJ729022
Supplementary_files_format_and_content: Tab deliminated file has total mapped reads to each annotated tRNA or other gene region for each sample.
Supplementary_files_format_and_content: Tab deliminated file has expression of each tRNA region or stem-loop in counts per million by library.

organism: Tetranychus urticae

source_name: Mitochondrial isolate from infested Silene vulgaris leaf tissue

growth_protocol: Infested leaf tissue was grown in a greenhouse with supplemental lighting (16-hr/8-hr light/dark cycle)

extract_protocol:
Mitochondria were isolated using differential centrifugation and disconinuous Percoll gradiets (Percoll density layers of 18%, 25%,  and 50%). Total RNA was extracted from isolated mitochondria using TRIzol following TRIzol manufacturer’s RNA extraction protocol.
Total RNA was deacylated in 20 mM Tris HCl (pH 9.0) at 37C for 40 min, then ligated to Y-shaped YAMMAT-seq adapters using the protocols of Warren et al., 2020 (RNA Biol.) and Shigematsu et al ., 2017 (RNA Biol.).

treatment_protocol: Total RNA from three replicates were treated with the enzyme AlkB with the methods of Zheng et al., 2015 (Nat Methods), Cozen et al., 2015  (Nat Methods), and Chen et al., 2016 (Chem Res Toxicol.).

tag: subcellular fraction

value: Mitochondria

tag: treatment

value: Untreated


title: Untreated_rep2


title: AlkB_treated_rep2

value: AlkB


title: AlkB_treated_rep1


title: AlkB_treated_rep3


title: RAL-321_fatBody_T=ZT5_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB1_FB_ZT5_29655


title: RAL-321_fatBody_T=ZT21_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB1_FB_ZT21_29655


title: RAL-321_fatBody_T=ZT3_Rep1

description:
processed data file:
raw_counts_all_samples.csv.gz
w1118_time_series_all_DGRPs_fatbody_norm.csv.gz
BRB2_FB_ZT3_29655


title: Untreated_rep1