title: Control 1 48 h

value: 6 days post-hatch


title: CEMBA190108_6A_1_CEMBA190108_6A_2_A1_ad001

status: Public on Feb 19 2021

type: SRA

city: La Jolla

first: Joseph

middle: R

last: Ecker

state: CA

address: 10010 North Torrey Pines Road

department: Genomic Analysis Laboratory

country: USA

institute: HHMI-Salk-Institute

library_source: genomic

data_processing:
Library strategy: snmC-seq2
Reads trimed with Cutadapt for adapters and low quality bases (Phred score >= 20)
The resulting files are mapped to in-silico bisulfite converted mm10 reference genome using Bismark.
The raw BAM file will be filtered using samtools to filter reads by MAPQ > 10 and use Picard to remove PCR duplicates
Tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls will be generated with in-house developing package using the filtered BAM files
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls. Columns are: 1. Chromosome, 2. Position, 3. Strand, 4. Cytosin Context, 5. methylated base call, 6. total mapped base call, 7. not used, place holder column

molecule: genomic DNA

organism: Mus musculus

source_name: C57BL/6J Male P56 Mouse Brain

growth_protocol: All mice are C57BL/6J Male, brain dissected in P56

extract_protocol:
the brain of P56 male C57BL/6J mouse will be removed and cut into 600 microns thick coronal sections using a tissue matrix. Then each region will be microdissected from the coronal tissue sections based on identified landmarks and brain atlas coordinates, as defined in Allen brain atlas CCF3 (Avaliable at: http://atlas.brain-map.org). For each dissection region, the tissue from several littermate mice will be combined together into to separate replicate groups. The number of animals in a replicate depends on the size of the tissue. Nuclei preparation will be stained with the fluorescently labeled anti-NeuN body and nucleic acid stain Hoechst 33342.
Library prepared following protocol discribed in Luo, Chongyuan, Angeline Rivkin, Jingtian Zhou, Justin P. Sandoval, Laurie Kurihara, Jacinta Lucero, Rosa Castanon, et al. 2018. “Robust Single-Cell DNA Methylome Profiling with snmC-seq2.” Nature Communications 9 (1): 3824.

tag: brain region

value: ACA,PL,ILA

tag: Sex

value: male

tag: age

tag: strain


title: Control 2

type: RNA

city: Frederiksberg C

first: Andrew

last: Williams

state: --- Select One ---

address: Dyrlægevej 100

country: Denmark

institute: University of Copenhagen

hyb_protocol: Affymetrix

scan_protocol: Affymetrix

data_processing: Affymetrix

label: biotin

molecule: total RNA

source_name: RAW 264.7 cells

label_protocol: Affymetrix

growth_protocol: Cells were grown under standard culture conditons (no more than 20 passages)

extract_protocol: Total RNA extracted with Qiagen RNAeasy kits.

treatment_protocol: Cells were pre-treated with PAC (15µg/mL) for 30 minutes, following either stimulation with LPS (500 ng/mL) or mock treatment for 6 hours

tag: cell type

value: RAW 264.7 macrophages

tag: treatment

value: Mock treated cells


title: Control 1


title: Ground Uninfected-2

city: Tempe

first: Jennifer

last: Barrila

state: AZ

address: 1001 S McAllister Ave

department: Biodesign Center for Fundamental and Applied Microbiomics

institute: Arizona State University

description:
Ground control-cultured HT-29 cells - uninfected control; Space Shuttle mission STS-131
CN38_S20_L003_R1_001

library_source: transcriptomic

data_processing:
bcl2fastq v2.17.1.14 used for basecalling
STAR v2.5.1b used for alignment
Cufflinks v2.2.1 was used to report FPKM values (Fragments Per Kilobase of transcript per Million mapped reads) and read counts. TPM (Transcripts Per Million) was calculated by an in-house R script.
Differential expression (DE) analysis was performed with EdgeR package from Bioconductor v3.2 in R 3.2.3.
Genome_build: Human: GRCh38.p7 primary assembly; Bacteria: S. Typhimurium LT2 genome
Supplementary_files_format_and_content: tab-delimited text files include FPKM and TPM values

organism: Homo sapiens

source_name: In vitro human colonic epithelial cells (HT-29)

growth_protocol: HT-29 cells were seeded into collagen-coated hollow fiber bioreactors at Kennedy Space Center at a concentration of 1x10^6 CFU. Cells were cultured using GTSF-2 medium. Wild Type Salmonella Typhimurium strain Chi-3339 (an animal-passaged derivative of wild type SL1344) was prepared from overnight cultures in Dulbecco's Phosphate Buffered Saline (DPBS) stasis buffer at a final concentration of ~1x10^7 CFU/mL. Prepared S. Typhimurium was loaded in to gas permeable FEP bags designated for a subset of the bioreactors. The RNA fixative RNAlater II (40 mL) was separately loaded into FEP bags (one per bioreactor). All bioreactors, bacteria bags and fixative bags were integrated into the Cell Culture Module (CCM) flight hardware, which was then sealed, powered and set to 37 °C and 5% CO2. The CCM was turned over to the KSC integration team at L-18 hours. STL-IMMUNE launched aboard Space Shuttle Discovery (STS-131) on April 5, 2010 at 6:21 am. At approximately L+3 hours, astronauts activated the on orbit programming of the CCM.

extract_protocol:
RNA was extracted from duplicate samples using the miRNeasy kit (Qiagen).  All samples were analyzed in biological duplicate (two separate bioreactors), except for the infected spaceflight sample which was analyzed in technical duplicate from the same bioreactor. Samples were lysed with 700 µl Qiazol (Qiagen), vortexed extensively and passed several times through a 25G needle. After a 5-minute static incubation at room temperature with intermittent vortexing, samples were added to MaXtract High Density tubes (Qiagen) together with 100 µl RNase-free water (Qiagen) and 200 µl chloroform (Sigma-Aldrich). Samples were then processed (including on-column DNase-treatment) according to the manufacturer’s instructions. RNA was quantified using a Nanodrop spectrophotometer and the integrity validated using an Agilent Bioanalyzer 2100 to confirm a RIN of 7 or greater for all samples. One of the uninfected ground control samples (CN122) had a RIN of 6.4.
RNA was fragmented with heat and magnesium to roughly 300 bp using the KAPA HyperPrep RNA-seq kit (Roche). The KAPA Hyper RNA-seq kit and Illumina-compatible adapters (IDT) were used for the remaining library construction. Adapter ligated molecules were cleaned using Kapa pure beads (Kapa Biosciences), amplified with Kapa HIFI enzyme. Each library was then analyzed for fragment size on an Agilent’s Tapestation and quantified by qPCR (KAPA Library Quantification Kit) on Quantstudio 5 (Thermo Fisher Scientific). Libraries were then multiplexed and sequenced on 2x150 flow cell on the NovaSeq platform (Illumina) at University of Colorado Anschutz Medical Campus Genomics and Microarray Core.

treatment_protocol: On Mission Elapsed Day 11, a subset of the HT-29 cultures were infected with ~1x10^7 CFU wild type S. Typhimurium (estimated multiplicity of infection/m.o.i. of ~1-10). The remaining cultures served as time-matched uninfected controls. Six hours post-infection, all cultures were fixed in RNAlater II.

value: HT-29 (ATCC HTB-38)


title: RNA-Seq (-)Harringtonine bio_rep2 tech_rep2

city: Worcester

first: Carrie

last: Kovalak

state: MA

address: 365 Plantation Street

department: RNA Therapeutics Institute

institute: University of Massachusetts Medical School

data_processing:
Prior to alignment, adaptor sequences and long stretches (≥ 20 nt) of adenosines were trimmed from read 3′ ends.
All libraries were filtered for reads aligning to repeat regions, as defined by RepeatMasker, using STAR v2.5.3a.
Remaining reads were aligned with STAR on two-pass mode allowing a maximum of 3 mismatches per pair and highly penalized deletions and insertions.
Mapped reads were then filtered for low mapping quality (MAPQ < 5) and/or duplicated reads, identified with the MarkDuplicates tool (Picard v2.17.8).
Genome_build: hg38
Supplementary_files_format_and_content: bigWig files containing mapped and filtered reads

source_name: HEK293 (-) Harringtonine

growth_protocol: HEK293 cells were grown at 37C in Dulbecco’s modified eagle medium (DMEM) supplemented with 10% fetal bovine serum (FBS) and 1% penicillin/ streptomycin.

extract_protocol:
RNA was isolated in TRIzol using the Direct-zol RNA Kit (Zymo Research, R2062).
Deep sequencing libraries were prepared from three biological replicates per condition using the KAPA RNA HyperPrep Kit with RiboErase (HMR) (Roche, 08098131702) with a modified protocol as follows.  Isolated RNA (7 ug; Quantified using Qubit RNA Broad Range Assay Kit (Thermo Fischer Scientific, Q10210) was first treated with Turbo DNase using the standard protocol (Thermo Fischer Scientific, AM2239).  Treated RNA (1 ug) was then used as input at the rRNA depletion step in the KAPA kit protocol.  To generate 200-550 nt fragments, fragmentation was carried out for 5 minutes at 94°C and samples immediately chilled on ice.  Following seven amplification cycles using the dual index adapters (5 uL of a 1.5 uM per uL dilution; final concentration of 10 nM) from the KAPA Dual-Indexed Adapter Kit (KK8722) (Roche, 08278555702), PCR products containing 200 to 550 nt inserts were size selected using SPRIselect beads (Beckman Coulter Life Sciences, B23318) and quantified using the Qubit dsDNA Broad Range Assay Kit (Thermo Fischer Scientific, Q32850).  As each library contained a unique barcode, all libraries (3 biological replicates + or - harringtonine treatment) were mixed and sequenced on an Illumina NextSeq 550 instrument using the High Output Kit v2.5 (Illumina, Inc., 20024908). All libraries were loaded at 1.8 pm with 5% PhiX and all data was written to BaseSpace (Illumina, Inc.).

treatment_protocol: Cells were subjected (+) or not (–) to a one hour treatment with harringtonine (2 ng/mL) prior to harvesting.

tag: cell line background

value: Untreated

tag: cellular fraction

value: Whole cell

tag: biological replicate

tag: technical replicate


title: CEMBA190108_6A_1_CEMBA190108_6A_2_A1_ad007


title: CEMBA190108_6A_1_CEMBA190108_6A_2_A10_ad001


title: Ground Uninfected-1

description:
Ground control-cultured HT-29 cells - uninfected control; Space Shuttle mission STS-131
CN122_S19_L003_R1_001


title: RNA-Seq (-)Harringtonine bio_rep2 tech_rep1


title: Flight Uninfected-2

description:
Flight-cultured HT-29 cells - uninfected control; Space Shuttle mission STS-131
CN76_S16_L003_R1_001


title: CEMBA190108_6A_1_CEMBA190108_6A_2_A1_ad010


title: CEMBA190108_6A_1_CEMBA190108_6A_2_A10_ad002


title: RNA-Seq (-)Harringtonine bio_rep1 tech_rep2


title: Flight Uninfected-1

description:
Flight-cultured HT-29 cells - uninfected control; Space Shuttle mission STS-131
CN142_S15_L003_R1_001


title: Control 3 48 h

city: Florence

first: Elizabeth

middle: R.

last: Jones

state: SC

address: 4822 E. Palmetto St.

department: Biology

institute: Francis Marion University

data_processing:
Bases Called using Illumina HiSeq Control Software
Initial processing of data was performed using CLC Genomics Workbench 12 (Qiagen, Hilden, Germany).  Adaptor sequences and low quality reads were trimmed, paired ends matched, and reads aligned to the C. variegatus genome
Reads were aligned to C. variegatus genome using CLC Genomics Workbench 10.1.1 (Qiagen, Hilden, Germany).
Gene expression (Transcripts per million --TPM) calculated using CLC Genomics Workbench 10.1.1 (Qiagen, Hilden, Germany)
Genome_build: C. variegatus genome (NCBI genome ID 13078)
Supplementary_files_format_and_content: CSV text files including TPM expression values

organism: Cyprinodon variegatus

source_name: whole body; n = 5 larvae

growth_protocol: C. variegatus brood stock were maintained at the University of Southern Mississippi’s Toxicology Lab in Ocean Springs, MS.  Fish were kept in 300 L circulating raceways containing 15 ppt artificial sea water at 25°C and 15 ppt salinity on a 16:8 light/dark cycle and fed commercial flake food daily.  Breeding was initiated by the placement of breeding nets in raceways.  After 12 hours embryos were collected and examined for fertilization.  Embryos were rolled on mesh mats to remove external villi, and incubated in 15 ppt sea water at 30°C with agitation to prevent clumping.  After hatching, embryos were reared until yolk-sacks were absorbed and larvae began free-feeding (4 days post-hatch).  Upon initiation of feeding, larvae were fed Artemia nauplii once daily.  Feeding continued throughout experiments.

extract_protocol:
Qiagen RNEasy, according to manufacturer's protocol
NuGen mRNA Library Construction, sequenced on Illumina NovaSEQ to generate 2 x 150 bp reads

treatment_protocol: Larvae were exposed to one of four conditions: control, hypoxia, oil, or oil plus hypoxia.  Larvae (n =20) were placed in mesh cups, with three replicate cups per treatment.  All larvae were exposed for 48 h and depurated in clean, normoxic water for an additional 48 h.  Exposures were conducted in flow through systems delivering test solutions at a rate of 2L/h.  Hypoxic conditions were achieved via bubbling of nitrogen gas through test solutions until dissolved oxygen reached  £ 2 mg/L O2.  Environmental conditions were held at 15 ppt and 30°C across treatments and tanks were monitored daily for temperature and salinity.  Dissolved oxygen was monitored every six hours to ensure maintenance of oxic regimes.  Following 48h of depuration, larvae were sampled and stored in RNA later at -80°C until further analysis.

tag: oil concentration (tpah50, µg/l)

tag: salinity (ppt)

tag: oxygen concentration

value: greater than or equal to  5 mg/ml


title: WT unwounded and wounded skin-CITE-seq_RUN1

status: Public on Feb 18 2021

city: New York

first: Shruti

last: Naik

state: NY

address: 435 East 30th Street

department: Pathology

institute: NYU Langone Health

description:
Hashtag1 = unwounded; Hashtag2 = post-wounded,day3; Hashtag3 = post-wounded,day5.
Hashtag results, CITE-seq and scRNA-seq data
RNA, ADT, HTO

data_processing:
Hashed samples were pooled at Ctrl,1: D3,1.5, D5:1 ratio prior to library preparation (Chromium Single Cell 3′ Library, 10x Genomics) and sequenced on an Illumina HiSeq 4000 as 150 bp paired-end reads. CITE-seq data was also generated.
Sequencing results were demultiplexed and converted to FASTQ format using Illumina bcl2fastq software. The Cell Ranger Single-Cell Software Suite (https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger) was used to perform sample demultiplexing, barcode processing, and single-cell 3’ gene counting
The cDNA insert was aligned to the mm10/GRCm38 reference genome. Only confidently mapped, non-PCR duplicates with valid barcodes and UMIs were used to generate the gene-barcode matrix
The results are split into two parts with RUN_1 containing technical replicate #1  and RUN_2 containing technical replicate #2 for each sample.
Genome_build: (mm10/GRCm38)
Supplementary_files_format_and_content: Filtered feature-barcode matrices (filtered_feature_bc_matrix) containing only detected cellular barcodes in MEX format.  Matrices include data for both RNA and antibody.

source_name: skin

growth_protocol: Lymphocytes were isolated from fresh mouse skin with or without wounding

extract_protocol: Unwounded or a ring with 0.25 mm width of skin adjacent to the wound edge was excised and digested in Liberase TL (Sigma) at 37C for 2.5 hours.  Digests were stopped by places samples on ice and adding EDTA and FBS. Digested tissues were mechanically disrupted by syringe plunger and then filtered through a 70-micron filter to obtain a single cell suspension. Single cell suspensions were stained with anti-CD16/32 before staining with surface fluorescent conjugated antibodies and with surface epitope marking oligo-tagged antibodies and sample specific oligo-tagged Totalseq-A antibodies at predetermined concentrations in a 100 μl staining buffer (PBS containing 5%FBS and 1% HEPES) per 10 million cells. Stained cells were re-suspended in DAPI in FACS buffer prior to cell sorting on a BD FACS Aria II. Hashed samples were pooled at Ctrl,1: D3,1.5, D5:1 ratio prior to scRNA-seq 10X Genomics droplet capture according to manufacturer's protocol.

treatment_protocol: Excisional full thickness wounds were created with 4 mm biopsy punch on the dorsal skin, 3 or 5 days prior wounded skin sample harvesting

tag: genotype

value: WT

tag: tissue

value: skin

tag: condition

value: mixed sample (non-demultiplexed)


title: RNA-Seq (+)Harringtonine bio_rep1 tech_rep1

source_name: HEK293 (+) Harringtonine

value: Harringtonine (2 ng/mL), one hour


title: Control 2 48 h


title: M0320C2: SS2 AD 5xFAD A187 2

city: Munich

first: Ozgun

last: Gokce

address: Feodor-Lynen-Strasse 17

country: Germany

institute: Institute for Stroke and Dementia Research

description: processed data file: ss2ad.tsv

data_processing:
BCL files were demultiplexed with the bcl2fastq software from Illumina.
Quality was assessed with FastQC
Trimming and QC filtering was performed with trim-galore and following command trim_galore -j 2 --paired -q 20 --nextera --stringency 1
Reads were aligned using rnaSTAR (Dobin et al., 2013). Read counts were collected using the parameter “quantMode GeneCounts” of rnaSTAR and using the unstranded values.
For 10x datasets, fastq files were processed with Cell Ranger v4
Genome_build: mm10
Supplementary_files_format_and_content: 5x expression matrices of raw counts as tab-separated files, for each dataset. First (unnamed) column are the gene names, each column depicts a single-cell.

extract_protocol:
The mice were deeply anesthetized and perfused with cold HBSS between 9am-11am (to decrease circadian fluctuations). Each brain was removed and under a dissection microscope individually micro-dissected; grey matter was isolated from the frontal cortex and white matter form optic tract, medial lemniscus and corpus callosum (attached grey matter and choroid plexus were removed carefully) isolated. We developed and established a microglia isolation protocol that prevents ex-vivo transcription and automatizes the mechanical isolation parts using GentleMacs with the Neural Tissue Dissociation Kit (Papain) (Miltenyi Biotec). We added actinomycin D (Act-D, Sigma, No. A1410) to a final concentration of 45 μM into the dissociation solution and enzyme mix to prevent ex-vivo transcription. The dissociated cell suspension was passed through a 70 μm cell strainer (Corning, 352350) before labeling. Subsequently, cells were blocked with mouse FcR-blocking reagent (CD16/CD32 Monoclonal Antibody, eBioscience cat:14-0161-82,1100) and then stained for 15 min using 7AAD (Thermo Fisher, A1310, 25 ug/mL) and the antibodies against CD45 (eFluor 450, 30-F11, eBioscience，Cat.:48-0451-82, 1:200) and CD11b (PE/Cy7,M1/70, eBioscience, Cat:48-0451-82,1:200) and after washed with PBS (Sigma, D8537). Viable (7AAD negative) single immune cells (CD45 and CD11b positive cells) were sorted by flow cytometry (SH800; Sony). For GFP positive microglia from CX3CR1GFP/+ mice, cells were either dissociated with Act-D or without and labeled with DAPI (4’,6-diamidino-2-phenylindole, 1:4000 dilution; Sigma) to label dead cells. After FSC-A/FSC-H selection of single-cells, DAPI negative and GFP positive cells were selected. Single immune cells (CD45 and CD11b positive cells) were sorted by flow cytometry (SH800; Sony). Flow cytometry data were analyzed using FlowJo v10. Single-cells were sorted into 96 well plates filled with 4 μL lysis buffer containing 0.05% Triton X-100 (Sigma) and, ERCC (External RNA Controls Consortium) RNA spike-in Mix (Ambion, Life Technologies) (1:24000000 dilution), 2.5 μM oligo-dT, 2.5 mM dNTP and 2 U/μL of recombinant RNase inhibitor (Clontech) then spun down and frozen at -80°C. Plates were thawed and libraries prepared as described below.
The 96-well plates containing the sorted single cells were first thawed and then incubated for 3 min at 72°C and thereafter immediately placed on ice. To perform reverse transcription (RT) we added each well a mix of 0.59 μL H2O, 0.5 μL SMARTScribe™ Reverse Transcriptase (Clontech), 2 μL 5x First Strand buffer, 0.25 μL Recombinant RNase Inhibitor (Clontech), 2 μL Betaine (5 M Sigma), 0.5 μL DTT (100 mM) 0.06 μL MgCl2 (1 M Sigma), 0.1 μL Template-switching oligos (TSO) (100 μM AAGCAGTGGTATCAACGCAGAGTACrGrG+G). Next RT reaction mixes were incubated at 42°C for 90 min followed by 70°C for 5 min and 10 cycles of 50°C 2 min, 42°C 2 min; finally ending with 70°C for 5 min for enzyme inactivation. Pre-amplification of cDNA was performed by adding 12.5 μL KAPA HiFi Hotstart 2x (KAPA Biosystems), 2.138 μL H2O, 0.25 μL ISPCR primers (10 μM, 5′ AAGCAGTGGTATCAACGCAGAGT-3), 0.1125 μL Lambda Exonuclease under the following conditions: 37°C for 30 min, 95°C for 3 min, 23 cycles of (98°C for 20 sec, 67°C for 15 sec, 72°C for 4 min), and a final extension at 72°C for 5 min. Libraries were then cleaned using AMPure bead (Beckman-Coulter) cleanup at a 0.7:1 ratio of beads to PCR product. Libraries were assessed by Bio-analyzer (Agilent 2100), using the High Sensitivity DNA analysis kit, and also fluorometrically using Qubit’s DNA HS assay kits and a Qubit 4.0 Fluorometer (Invitrogen, LifeTechnologies) to measure the concentrations. Further selection of samples was performed via qPCR assay against ubiquitin transcripts Ubb77 (primer 1 5’-GGAGAGTCCATCGTGGTTATTT-3’ primer 2 5’-ACCTCTAGGGTGATGGTCTT-3’, probe 5’-/5Cy5/TGCAGATCTTCGTGAAGACCTGAC/3IAbRQSp/-3’) measured on a LightCycler 480 Instrument II (Roche). Samples were normalized to 160 pg/µL. Sequencing libraries were constructed by using in-house produced Tn5 transposase (Picelli et al., 2014). Libraries were barcoded and pooled then underwent three 3 rounds of AMPure bead (Beckman-Coulter) cleanup at a 0.8:1 ratio of beads to library. Libraries were sequenced 2x150 reads base pairs (bp) paired-end on Illumina HiSeq4000 to a depth of 3x105–6x105 reads/sample.
scRNA-seq with Smart-seq2

value: 5 months

value: Prefrontal Cortex

value: Microglia

tag: technology

value: scRNA-seq Smart-seq2


title: M17P5F6: SS2 AD Wild type A173 27

description: processed data file: ss2ad.tsv

value: 6 months

value: female

value: Wild type


title: A549 infection Delta-HA rep2 - uninfected total RNA

city: Minneapolis

first: Wei-Shou

last: Hu

state: MN

address: 421 Washington Ave. SE

institute: University of Minnesota

description:
Delta_HAPB1_FPKM.xlsx
2-naive-0

data_processing:
All the raw RNA-Seq reads were first trimmed off adapters and removed low-quality bases by Trimmomatic and checked for quality using FASTQC
All the trimmed reads with a minimum read length of 38bp and average quality per base higher than 30 were mapped into the combined genome of host+IAV by STAR v2.5.3a
The expression level of all the genes, including host and viral genes, were quantified by Cufflinks
Genome_build: CanFam3.1 for MDCK cells, GRCh38.p13 for A549 cells, and NCBI Taxon ID 211044 for IAV PR/8/34
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each sample

source_name: A549 cells

growth_protocol: Madin-Darby canine kidney (MDCK) and Human lung adenocarcinoma epithelial A549 cells were maintained in Dulbecco's Modified Eagle Medium (DMEM) supplemented with 10% FBS. Recombinant A/Puerto Rico/8/34 (H1N1) was rescued by plasmid-based transfection, plaque purified and propagated in embryonic chicken eggs.  The single-cycle virus (Delta-HA and Delta-PB1) were created by replacing the coding sequence of HA and PB1 by mCherry and amplified in MDCK cells engineered to express HA and PB1, respectively. Viral titers were determined by plaque assay in MDCK cells.

extract_protocol:
MDCK total RNA were extracted using RNeasy Mini Kit (QIAGEN). A549 total RNA were extracted using TRIzol.
MDCK cDNA libraries were prepared using the Clontech Pico SMARTer Stranded Total RNA-Seq kit v2. For the third MDCK infection, the RNA was also prepped by Illumina TruSeq Stranded mRNA Rrep kit to isolate mRNA only. A549 cDNA libraries were prepared using the Stranded Total RNA v2 PicoMammalian kit (Takara).

treatment_protocol: MDCK cells were infected with IAV PR8 (MOI =0.5) and incubated at 4ºC for 30 minutes to allow for the virus to adsorb to the cell surface but not to enter the cytosol. Synchronized IAV infection was initiated by shifting the temperature to 37ºC. Infections with single-cycle viruses (Delta-HA and Delta-PB1) were performed in A549 cells in infection media at an MOI of 1. Infections were also synchronized at 4ºC for 30 minutes then incubated at 37ºC.

value: adenocarcinomic alveolar basal epithelial cells

tag: cell line

value: uninfected


title: RNA-Seq (-)Harringtonine bio_rep3 tech_rep1


title: M17P3F9: SS2 AD Wild type A173 25

description: processed data file: ss2ad.tsv

tag: Sex


title: M17P3G11: SS2 AD Wild type A173 26

description: processed data file: ss2ad.tsv

tag: age


title: M17P3F7: SS2 AD Wild type A173 23

description: processed data file: ss2ad.tsv

tag: strain


title: M17P3E11: SS2 AD Wild type A173 17

description: processed data file: ss2ad.tsv


title: M17P3D8: SS2 AD Wild type A173 16

description: processed data file: ss2ad.tsv


title: M17P3E9: SS2 AD Wild type A173 20

description: processed data file: ss2ad.tsv


title: RNA-Seq (+)Harringtonine bio_rep1 tech_rep2


title: CEMBA190108_6A_1_CEMBA190108_6A_2_A1_ad006

tag: brain region

value: ACA,PL,ILA

value: male


title: M17P3C10: SS2 AD Wild type A173 8

description: processed data file: ss2ad.tsv


title: RNA-Seq (-)Harringtonine bio_rep1 tech_rep1

tag: treatment

value: Untreated

value: Whole cell


title: M0320E2: SS2 AD 5xFAD A187 3

description: processed data file: ss2ad.tsv


title: WT unwounded and wounded skin-CITE-seq_RUN2

value: WT


title: CEMBA190108_6A_1_CEMBA190108_6A_2_A1_ad002


title: M0320B4: SS2 AD 5xFAD A187 1

description: processed data file: ss2ad.tsv


title: M17P3A9: SS2 AD Wild type A173 4

description: processed data file: ss2ad.tsv


title: M17P3F8: SS2 AD Wild type A173 24

description: processed data file: ss2ad.tsv


title: M17P3F10: SS2 AD Wild type A173 21

description: processed data file: ss2ad.tsv


title: M17P3F11: SS2 AD Wild type A173 22

description: processed data file: ss2ad.tsv


title: M17P3E8: SS2 AD Wild type A173 19

description: processed data file: ss2ad.tsv


title: Lgr5-tuft marker+

city: Cambridge

first: Norihiro

last: Goto

address: 500 Main Street, Building 76

department: Department of Biology

institute: Massachusetts Institute of Technology

hyb_protocol: 2.0 ug of Cy3-labelled cRNA was fragmented at 60°C for 30 minutes in a reaction volume of 25 ul containing 1x Agilent fragmentation buffer and 2x Agilent blocking agent following the manufacturer’s instructions. On completion of the fragmentation reaction, 25 ul of 2x Agilent hybridization buffer was added to the fragmentation mixture and hybridized to SurePrint G3 Human GE 8x60K Microarray Ver2.0 (Agilent) for 17 hours at 65°C in a rotating Agilent hybridization oven. After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37°C GE Wash buffer 2 (Agilent).

scan_protocol: Slides were scanned immediately after washing on the Agilent SureScan Microarray Scanner (G2600D) using one color scan setting for 8x60k array slides (Scan Area 61x21.6 mm, Scan resolution 3um, Dye channel is set to Green PMT is set to 100%).

data_processing: The scanned images were analyzed with Feature Extraction Software 11.5.1.1(Agilent) using default parameters to obtain background subtracted and spatially detrended Processed Signal intensities.

source_name: EpCAM+ intestinal tumor epithelial cells of Lgr5CreERT2/+; Ctnnb1lox(ex3)/ox(ex3) mice 14 days after tamoxifen administration

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 13 ng Total RNA using the Low Input Quick Amp Labeling Kit(Agilent) according to the manufacturer's instructions, followed by RNeasy column purification (QIAGEN, Valencia, CA). Dye incorporation and cRNA yield were checked with the NanoDrop ND-2000 Spectrophotometer.

extract_protocol: Total RNA was extracted from sorted tumor cells using the NucleoSpin RNA kit (Takara, Shiga, Japan) following the manufacturer's recommendations.

value: intestinal tumor cells

tag: cell markers

value: Lgr5-tuft marker+


title: Lgr5-tuft marker-

value: Lgr5-tuft marker-


title: M0416H12: SS2 AD Wild type A132 12

description: processed data file: ss2ad.tsv

value: 7 months


title: Lgr5+tuft marker+

value: Lgr5+tuft marker+


title: Lgr5+tuft marker-

value: Lgr5+tuft marker-


title: M17P3E7: SS2 AD Wild type A173 18

description: processed data file: ss2ad.tsv

value: Prefrontal Cortex

value: Microglia

value: scRNA-seq Smart-seq2


title: M17P3D7: SS2 AD Wild type A173 15

description: processed data file: ss2ad.tsv

value: 6 months

value: female

value: Wild type


title: M0416H9: SS2 AD Wild type A132 14

description: processed data file: ss2ad.tsv


title: M17P3D12: SS2 AD Wild type A173 14

description: processed data file: ss2ad.tsv


title: M0416F8: SS2 AD Wild type A132 10

description: processed data file: ss2ad.tsv


title: M0416E8: SS2 AD Wild type A132 8

description: processed data file: ss2ad.tsv


title: M0416E7: SS2 AD Wild type A132 7

description: processed data file: ss2ad.tsv


title: M17P3D11: SS2 AD Wild type A173 13

description: processed data file: ss2ad.tsv


title: M17P3C9: SS2 AD Wild type A173 11

description: processed data file: ss2ad.tsv


title: M17P3C8: SS2 AD Wild type A173 10

description: processed data file: ss2ad.tsv


title: M17P3B8: SS2 AD Wild type A173 6

description: processed data file: ss2ad.tsv


title: M17P3B9: SS2 AD Wild type A173 7

description: processed data file: ss2ad.tsv


title: M17P3C7: SS2 AD Wild type A173 9

description: processed data file: ss2ad.tsv


title: M17P3B10: SS2 AD Wild type A173 5

description: processed data file: ss2ad.tsv


title: M0416D9: SS2 AD Wild type A132 5

description: processed data file: ss2ad.tsv


title: M0416C9: SS2 AD Wild type A132 3

description: processed data file: ss2ad.tsv


title: M17P3A8: SS2 AD Wild type A173 3

description: processed data file: ss2ad.tsv


title: M17P3D10: SS2 AD Wild type A173 12

description: processed data file: ss2ad.tsv


title: M17P3A7: SS2 AD Wild type A173 2

description: processed data file: ss2ad.tsv


title: M25P3H3: SS2 AD 5xFAD A100 24

description: processed data file: ss2ad.tsv


title: M17P3A10: SS2 AD Wild type A173 1

description: processed data file: ss2ad.tsv


title: M25P3G4: SS2 AD 5xFAD A100 19

description: processed data file: ss2ad.tsv


title: M25P3G5: SS2 AD 5xFAD A100 20

description: processed data file: ss2ad.tsv


title: M0416F7: SS2 AD Wild type A132 9

description: processed data file: ss2ad.tsv


title: M0416E10: SS2 AD Wild type A132 6

description: processed data file: ss2ad.tsv


title: M25P3E6: SS2 AD 5xFAD A100 14

description: processed data file: ss2ad.tsv


title: M25P3F3: SS2 AD 5xFAD A100 16

description: processed data file: ss2ad.tsv


title: M25P3H2: SS2 AD 5xFAD A100 23

description: processed data file: ss2ad.tsv


title: M0416C8: SS2 AD Wild type A132 2

description: processed data file: ss2ad.tsv


title: M25P3F4: SS2 AD 5xFAD A100 17

description: processed data file: ss2ad.tsv


title: M25P3G6: SS2 AD 5xFAD A100 21

description: processed data file: ss2ad.tsv


title: M25P3F1: SS2 AD 5xFAD A100 15

description: processed data file: ss2ad.tsv


title: M25P3F6: SS2 AD 5xFAD A100 18

description: processed data file: ss2ad.tsv


title: M25P3D3: SS2 AD 5xFAD A100 10

description: processed data file: ss2ad.tsv


title: M25P3D5: SS2 AD 5xFAD A100 11

description: processed data file: ss2ad.tsv


title: M25P3D1: SS2 AD 5xFAD A100 9

description: processed data file: ss2ad.tsv


title: M25P3H1: SS2 AD 5xFAD A100 22

description: processed data file: ss2ad.tsv


title: M0416B9: SS2 AD Wild type A132 1

description: processed data file: ss2ad.tsv


title: M25P3E3: SS2 AD 5xFAD A100 13

description: processed data file: ss2ad.tsv


title: M25P3E1: SS2 AD 5xFAD A100 12

description: processed data file: ss2ad.tsv


title: M25P3B1: SS2 AD 5xFAD A100 2

description: processed data file: ss2ad.tsv


title: M25P3C3: SS2 AD 5xFAD A100 8

description: processed data file: ss2ad.tsv


title: M25P3B6: SS2 AD 5xFAD A100 5

description: processed data file: ss2ad.tsv


title: M25P3A1: SS2 AD 5xFAD A100 1

description: processed data file: ss2ad.tsv


title: M25P3B5: SS2 AD 5xFAD A100 4

description: processed data file: ss2ad.tsv


title: M25P3C1: SS2 AD 5xFAD A100 6

description: processed data file: ss2ad.tsv


title: M25P3B3: SS2 AD 5xFAD A100 3

description: processed data file: ss2ad.tsv


title: M17P3F1: SS2 AD 5xFAD A99 20

description: processed data file: ss2ad.tsv


title: M25P3C2: SS2 AD 5xFAD A100 7

description: processed data file: ss2ad.tsv


title: M17P3E2: SS2 AD 5xFAD A99 17

description: processed data file: ss2ad.tsv


title: M17P3D5: SS2 AD 5xFAD A99 15

description: processed data file: ss2ad.tsv


title: M17P3D3: SS2 AD 5xFAD A99 13

description: processed data file: ss2ad.tsv


title: M17P3D4: SS2 AD 5xFAD A99 14

description: processed data file: ss2ad.tsv


title: M17P3D1: SS2 AD 5xFAD A99 11

description: processed data file: ss2ad.tsv


title: M17P3D2: SS2 AD 5xFAD A99 12

description: processed data file: ss2ad.tsv


title: M0416H10: SS2 AD Wild type A132 11

description: processed data file: ss2ad.tsv


title: M17P3E6: SS2 AD 5xFAD A99 19

description: processed data file: ss2ad.tsv


title: M0416H7: SS2 AD Wild type A132 13

description: processed data file: ss2ad.tsv


title: M17P3E3: SS2 AD 5xFAD A99 18

description: processed data file: ss2ad.tsv


title: M17P3C6: SS2 AD 5xFAD A99 10

description: processed data file: ss2ad.tsv


title: M17P3D6: SS2 AD 5xFAD A99 16

description: processed data file: ss2ad.tsv


title: M17P3F6: SS2 AD 5xFAD A99 21

description: processed data file: ss2ad.tsv


title: M17P3G5: SS2 AD 5xFAD A99 23

description: processed data file: ss2ad.tsv


title: M17P3C4: SS2 AD 5xFAD A99 8

description: processed data file: ss2ad.tsv


title: M17P3C5: SS2 AD 5xFAD A99 9

description: processed data file: ss2ad.tsv


title: M17P3C3: SS2 AD 5xFAD A99 7

description: processed data file: ss2ad.tsv


title: M17P3G4: SS2 AD 5xFAD A99 22

description: processed data file: ss2ad.tsv


title: M17P3C2: SS2 AD 5xFAD A99 6

description: processed data file: ss2ad.tsv


title: M17P3B6: SS2 AD 5xFAD A99 5

description: processed data file: ss2ad.tsv


title: M0416D8: SS2 AD Wild type A132 4

description: processed data file: ss2ad.tsv


title: M17P3A6: SS2 AD 5xFAD A99 2

description: processed data file: ss2ad.tsv


title: M25P2H9: SS2 AD 5xFAD A93 18

description: processed data file: ss2ad.tsv


title: M17P3A3: SS2 AD 5xFAD A99 1

description: processed data file: ss2ad.tsv


title: M17P3B2: SS2 AD 5xFAD A99 3

description: processed data file: ss2ad.tsv


title: M25P2H12: SS2 AD 5xFAD A93 17

description: processed data file: ss2ad.tsv


title: M17P3B5: SS2 AD 5xFAD A99 4

description: processed data file: ss2ad.tsv


title: M25P2G11: SS2 AD 5xFAD A93 14

description: processed data file: ss2ad.tsv


title: M25P2G12: SS2 AD 5xFAD A93 15

description: processed data file: ss2ad.tsv


title: M25P2E7: SS2 AD 5xFAD A93 11

description: processed data file: ss2ad.tsv


title: M25P2E8: SS2 AD 5xFAD A93 12

description: processed data file: ss2ad.tsv


title: M25P2E11: SS2 AD 5xFAD A93 9

description: processed data file: ss2ad.tsv


title: M25P2D11: SS2 AD 5xFAD A93 7

description: processed data file: ss2ad.tsv


title: M25P2A9: SS2 AD 5xFAD A93 3

description: processed data file: ss2ad.tsv


title: M25P2C11: SS2 AD 5xFAD A93 5

description: processed data file: ss2ad.tsv


title: M25P2B12: SS2 AD 5xFAD A93 4

description: processed data file: ss2ad.tsv


title: M0416E6: SS2 AD 5xFAD A91 4

description: processed data file: ss2ad.tsv


title: M0416E5: SS2 AD 5xFAD A91 3

description: processed data file: ss2ad.tsv


title: M0416H6: SS2 AD 5xFAD A91 7

description: processed data file: ss2ad.tsv


title: M0416H5: SS2 AD 5xFAD A91 6

description: processed data file: ss2ad.tsv


title: M25P2D12: SS2 AD 5xFAD A93 8

description: processed data file: ss2ad.tsv


title: M25P2E12: SS2 AD 5xFAD A93 10

description: processed data file: ss2ad.tsv


title: M25P2C12: SS2 AD 5xFAD A93 6

description: processed data file: ss2ad.tsv


title: M0416C6: SS2 AD 5xFAD A91 2

description: processed data file: ss2ad.tsv


title: M25P2H11: SS2 AD 5xFAD A93 16

description: processed data file: ss2ad.tsv


title: MUC6097: SS2 Actinomycin Wild type 74

description: processed data file: ss2actinomycin.tsv

source_name: Pool of 3 mice

value: C57BL/6J CX3CR1-GFP

value: pooled male and female


title: MUC6094: SS2 Actinomycin Wild type 73

description: processed data file: ss2actinomycin.tsv


title: MUC6092: SS2 Actinomycin Wild type 72

description: processed data file: ss2actinomycin.tsv


title: MUC6089: SS2 Actinomycin Wild type 70

description: processed data file: ss2actinomycin.tsv


title: MUC6091: SS2 Actinomycin Wild type 71

description: processed data file: ss2actinomycin.tsv


title: MUC6088: SS2 Actinomycin Wild type 69

description: processed data file: ss2actinomycin.tsv


title: M25P2F7: SS2 AD 5xFAD A93 13

description: processed data file: ss2ad.tsv


title: MUC6087: SS2 Actinomycin Wild type 68

description: processed data file: ss2actinomycin.tsv


title: MUC6086: SS2 Actinomycin Wild type 67

description: processed data file: ss2actinomycin.tsv


title: MUC6085: SS2 Actinomycin Wild type 66

description: processed data file: ss2actinomycin.tsv


title: M25P2A8: SS2 AD 5xFAD A93 2

description: processed data file: ss2ad.tsv


title: M25P2A11: SS2 AD 5xFAD A93 1

description: processed data file: ss2ad.tsv


title: MUC6083: SS2 Actinomycin Wild type 64

description: processed data file: ss2actinomycin.tsv


title: MUC6081: SS2 Actinomycin Wild type 63

description: processed data file: ss2actinomycin.tsv


title: MUC6080: SS2 Actinomycin Wild type 62

description: processed data file: ss2actinomycin.tsv


title: M0416F6: SS2 AD 5xFAD A91 5

description: processed data file: ss2ad.tsv


title: MUC6079: SS2 Actinomycin Wild type 61

description: processed data file: ss2actinomycin.tsv


title: M0416B1: SS2 AD 5xFAD A91 1

description: processed data file: ss2ad.tsv


title: MUC6084: SS2 Actinomycin Wild type 65

description: processed data file: ss2actinomycin.tsv


title: MUC6099: SS2 Actinomycin Wild type 75

description: processed data file: ss2actinomycin.tsv


title: MUC6077: SS2 Actinomycin Wild type 59

description: processed data file: ss2actinomycin.tsv


title: MUC6073: SS2 Actinomycin Wild type 56

description: processed data file: ss2actinomycin.tsv


title: MUC6071: SS2 Actinomycin Wild type 54

description: processed data file: ss2actinomycin.tsv


title: MUC6076: SS2 Actinomycin Wild type 58

description: processed data file: ss2actinomycin.tsv


title: MUC6074: SS2 Actinomycin Wild type 57

description: processed data file: ss2actinomycin.tsv


title: MUC6070: SS2 Actinomycin Wild type 53

description: processed data file: ss2actinomycin.tsv


title: MUC6060: SS2 Actinomycin Wild type 47

description: processed data file: ss2actinomycin.tsv


title: MUC6061: SS2 Actinomycin Wild type 48

description: processed data file: ss2actinomycin.tsv


title: MUC6065: SS2 Actinomycin Wild type 50

description: processed data file: ss2actinomycin.tsv


title: MUC6066: SS2 Actinomycin Wild type 51

description: processed data file: ss2actinomycin.tsv


title: MUC6062: SS2 Actinomycin Wild type 49

description: processed data file: ss2actinomycin.tsv


title: MUC6059: SS2 Actinomycin Wild type 46

description: processed data file: ss2actinomycin.tsv


title: MUC6058: SS2 Actinomycin Wild type 45

description: processed data file: ss2actinomycin.tsv


title: MUC6055: SS2 Actinomycin Wild type 42

description: processed data file: ss2actinomycin.tsv


title: MUC6053: SS2 Actinomycin Wild type 40

description: processed data file: ss2actinomycin.tsv


title: MUC6056: SS2 Actinomycin Wild type 43

description: processed data file: ss2actinomycin.tsv


title: MUC6078: SS2 Actinomycin Wild type 60

description: processed data file: ss2actinomycin.tsv


title: MUC6052: SS2 Actinomycin Wild type 39

description: processed data file: ss2actinomycin.tsv


title: MUC6050: SS2 Actinomycin Wild type 37

description: processed data file: ss2actinomycin.tsv


title: MUC6051: SS2 Actinomycin Wild type 38

description: processed data file: ss2actinomycin.tsv


title: MUC6048: SS2 Actinomycin Wild type 35

description: processed data file: ss2actinomycin.tsv


title: MUC6049: SS2 Actinomycin Wild type 36

description: processed data file: ss2actinomycin.tsv


title: MUC6047: SS2 Actinomycin Wild type 34

description: processed data file: ss2actinomycin.tsv


title: MUC6057: SS2 Actinomycin Wild type 44

description: processed data file: ss2actinomycin.tsv


title: MUC6042: SS2 Actinomycin Wild type 30

description: processed data file: ss2actinomycin.tsv


title: MUC6043: SS2 Actinomycin Wild type 31

description: processed data file: ss2actinomycin.tsv


title: MUC6046: SS2 Actinomycin Wild type 33

description: processed data file: ss2actinomycin.tsv


title: MUC6054: SS2 Actinomycin Wild type 41

description: processed data file: ss2actinomycin.tsv


title: MUC6072: SS2 Actinomycin Wild type 55

description: processed data file: ss2actinomycin.tsv


title: MUC6067: SS2 Actinomycin Wild type 52

description: processed data file: ss2actinomycin.tsv


title: MUC6045: SS2 Actinomycin Wild type 32

description: processed data file: ss2actinomycin.tsv


title: MUC6032: SS2 Actinomycin Wild type 23

description: processed data file: ss2actinomycin.tsv


title: MUC6028: SS2 Actinomycin Wild type 19

description: processed data file: ss2actinomycin.tsv


title: MUC6030: SS2 Actinomycin Wild type 21

description: processed data file: ss2actinomycin.tsv


title: MUC6031: SS2 Actinomycin Wild type 22

description: processed data file: ss2actinomycin.tsv


title: MUC6040: SS2 Actinomycin Wild type 29

description: processed data file: ss2actinomycin.tsv


title: MUC6039: SS2 Actinomycin Wild type 28

description: processed data file: ss2actinomycin.tsv


title: MUC6034: SS2 Actinomycin Wild type 25

description: processed data file: ss2actinomycin.tsv


title: MUC6036: SS2 Actinomycin Wild type 26

description: processed data file: ss2actinomycin.tsv


title: MUC6038: SS2 Actinomycin Wild type 27

description: processed data file: ss2actinomycin.tsv


title: MUC6033: SS2 Actinomycin Wild type 24

description: processed data file: ss2actinomycin.tsv


title: MUC6029: SS2 Actinomycin Wild type 20

description: processed data file: ss2actinomycin.tsv


title: MUC6027: SS2 Actinomycin Wild type 18

description: processed data file: ss2actinomycin.tsv


title: MUC6026: SS2 Actinomycin Wild type 17

description: processed data file: ss2actinomycin.tsv


title: MUC6022: SS2 Actinomycin Wild type 13

description: processed data file: ss2actinomycin.tsv


title: MUC6025: SS2 Actinomycin Wild type 16

description: processed data file: ss2actinomycin.tsv


title: MUC6024: SS2 Actinomycin Wild type 15

description: processed data file: ss2actinomycin.tsv


title: MUC6018: SS2 Actinomycin Wild type 11

description: processed data file: ss2actinomycin.tsv


title: MUC6015: SS2 Actinomycin Wild type 8

description: processed data file: ss2actinomycin.tsv


title: MUC6017: SS2 Actinomycin Wild type 10

description: processed data file: ss2actinomycin.tsv


title: MUC6012: SS2 Actinomycin Wild type 6

description: processed data file: ss2actinomycin.tsv


title: MUC6010: SS2 Actinomycin Wild type 4

description: processed data file: ss2actinomycin.tsv


title: MUC6023: SS2 Actinomycin Wild type 14

description: processed data file: ss2actinomycin.tsv


title: MUC6016: SS2 Actinomycin Wild type 9

description: processed data file: ss2actinomycin.tsv


title: MUC6021: SS2 Actinomycin Wild type 12

description: processed data file: ss2actinomycin.tsv


title: MUC6014: SS2 Actinomycin Wild type 7

description: processed data file: ss2actinomycin.tsv


title: MUC6007: SS2 Actinomycin Wild type 1

description: processed data file: ss2actinomycin.tsv


title: MUC6011: SS2 Actinomycin Wild type 5

description: processed data file: ss2actinomycin.tsv


title: MUC6008: SS2 Actinomycin Wild type 2

description: processed data file: ss2actinomycin.tsv


title: P3H3: SS2 Aged  Trem2ko White Matter A13 5

description: processed data file: 10xaged.tsv

value: 28 months

value: White Matter


title: P3H9: SS2 Aged  Trem2ko Grey Matter A13 6

description: processed data file: 10xaged.tsv

value: Grey Matter


title: P3E5: SS2 Aged  Trem2ko White Matter A13 4

description: processed data file: 10xaged.tsv


title: P3C4: SS2 Aged  Trem2ko White Matter A13 3

description: processed data file: 10xaged.tsv


title: P3A4: SS2 Aged  Trem2ko White Matter A13 1

description: processed data file: 10xaged.tsv


title: P7H9: SS2 Aged  Trem2ko Grey Matter A12 182

description: processed data file: 10xaged.tsv

value: 18 months

value: male


title: P3A8: SS2 Aged  Trem2ko Grey Matter A13 2

description: processed data file: 10xaged.tsv


title: P7H7: SS2 Aged  Trem2ko Grey Matter A12 180

description: processed data file: 10xaged.tsv


title: P7H2: SS2 Aged  Trem2ko Grey Matter A12 176

description: processed data file: 10xaged.tsv


title: P7H1: SS2 Aged  Trem2ko Grey Matter A12 172

description: processed data file: 10xaged.tsv


title: P7H11: SS2 Aged  Trem2ko Grey Matter A12 174

description: processed data file: 10xaged.tsv


title: P7G9: SS2 Aged  Trem2ko Grey Matter A12 171

description: processed data file: 10xaged.tsv


title: P7H6: SS2 Aged  Trem2ko White Matter A12 179

description: processed data file: 10xaged.tsv


title: P7H8: SS2 Aged  Trem2ko Grey Matter A12 181

description: processed data file: 10xaged.tsv


title: P7H5: SS2 Aged  Trem2ko White Matter A12 178

description: processed data file: 10xaged.tsv


title: P7H4: SS2 Aged  Trem2ko White Matter A12 177

description: processed data file: 10xaged.tsv


title: P7G1: SS2 Aged  Trem2ko Grey Matter A12 162

description: processed data file: 10xaged.tsv


title: P7F8: SS2 Aged  Trem2ko Grey Matter A12 160

description: processed data file: 10xaged.tsv


title: P7H10: SS2 Aged  Trem2ko Grey Matter A12 173

description: processed data file: 10xaged.tsv


title: MUC6009: SS2 Actinomycin Wild type 3

description: processed data file: ss2actinomycin.tsv


title: P7F6: SS2 Aged  Trem2ko Grey Matter A12 158

description: processed data file: 10xaged.tsv


title: P7G5: SS2 Aged  Trem2ko White Matter A12 168

description: processed data file: 10xaged.tsv


title: P7G7: SS2 Aged  Trem2ko Grey Matter A12 169

description: processed data file: 10xaged.tsv


title: P7H12: SS2 Aged  Trem2ko Grey Matter A12 175

description: processed data file: 10xaged.tsv


title: P7G4: SS2 Aged  Trem2ko White Matter A12 167

description: processed data file: 10xaged.tsv


title: P7F12: SS2 Aged  Trem2ko Grey Matter A12 153

description: processed data file: 10xaged.tsv


title: P7G10: SS2 Aged  Trem2ko Grey Matter A12 163

description: processed data file: 10xaged.tsv


title: P7G8: SS2 Aged  Trem2ko Grey Matter A12 170

description: processed data file: 10xaged.tsv


title: P7G2: SS2 Aged  Trem2ko Grey Matter A12 166

description: processed data file: 10xaged.tsv


title: P7G12: SS2 Aged  Trem2ko Grey Matter A12 165

description: processed data file: 10xaged.tsv


title: P7F7: SS2 Aged  Trem2ko Grey Matter A12 159

description: processed data file: 10xaged.tsv


title: P7F9: SS2 Aged  Trem2ko Grey Matter A12 161

description: processed data file: 10xaged.tsv


title: P7G11: SS2 Aged  Trem2ko Grey Matter A12 164

description: processed data file: 10xaged.tsv


title: P7E9: SS2 Aged  Trem2ko Grey Matter A12 149

description: processed data file: 10xaged.tsv


title: P7F4: SS2 Aged  Trem2ko White Matter A12 156

description: processed data file: 10xaged.tsv


title: P7F3: SS2 Aged  Trem2ko White Matter A12 155

description: processed data file: 10xaged.tsv


title: P7F2: SS2 Aged  Trem2ko Grey Matter A12 154

description: processed data file: 10xaged.tsv


title: P7F5: SS2 Aged  Trem2ko White Matter A12 157

description: processed data file: 10xaged.tsv


title: P7F11: SS2 Aged  Trem2ko Grey Matter A12 152

description: processed data file: 10xaged.tsv


title: P7E6: SS2 Aged  Trem2ko Grey Matter A12 146

description: processed data file: 10xaged.tsv


title: P7E4: SS2 Aged  Trem2ko White Matter A12 144

description: processed data file: 10xaged.tsv


title: P7E2: SS2 Aged  Trem2ko Grey Matter A12 142

description: processed data file: 10xaged.tsv


title: P7F1: SS2 Aged  Trem2ko Grey Matter A12 150

description: processed data file: 10xaged.tsv


title: P7E3: SS2 Aged  Trem2ko White Matter A12 143

description: processed data file: 10xaged.tsv


title: P7E11: SS2 Aged  Trem2ko Grey Matter A12 140

description: processed data file: 10xaged.tsv


title: P7E12: SS2 Aged  Trem2ko Grey Matter A12 141

description: processed data file: 10xaged.tsv


title: P7E7: SS2 Aged  Trem2ko Grey Matter A12 147

description: processed data file: 10xaged.tsv


title: P7D9: SS2 Aged  Trem2ko Grey Matter A12 137

description: processed data file: 10xaged.tsv


title: P7E1: SS2 Aged  Trem2ko Grey Matter A12 138

description: processed data file: 10xaged.tsv


title: P7D8: SS2 Aged  Trem2ko Grey Matter A12 136

description: processed data file: 10xaged.tsv


title: P7E8: SS2 Aged  Trem2ko Grey Matter A12 148

description: processed data file: 10xaged.tsv


title: P7E10: SS2 Aged  Trem2ko Grey Matter A12 139

description: processed data file: 10xaged.tsv


title: P7E5: SS2 Aged  Trem2ko White Matter A12 145

description: processed data file: 10xaged.tsv


title: P7D10: SS2 Aged  Trem2ko Grey Matter A12 127

description: processed data file: 10xaged.tsv


title: P7D7: SS2 Aged  Trem2ko Grey Matter A12 135

description: processed data file: 10xaged.tsv


title: P7D5: SS2 Aged  Trem2ko White Matter A12 133

description: processed data file: 10xaged.tsv


title: P7D3: SS2 Aged  Trem2ko White Matter A12 131

description: processed data file: 10xaged.tsv


title: P7D4: SS2 Aged  Trem2ko White Matter A12 132

description: processed data file: 10xaged.tsv


title: P7D11: SS2 Aged  Trem2ko Grey Matter A12 128

description: processed data file: 10xaged.tsv


title: P7F10: SS2 Aged  Trem2ko Grey Matter A12 151

description: processed data file: 10xaged.tsv


title: P7D12: SS2 Aged  Trem2ko Grey Matter A12 129

description: processed data file: 10xaged.tsv


title: P7D1: SS2 Aged  Trem2ko Grey Matter A12 126

description: processed data file: 10xaged.tsv


title: P7C9: SS2 Aged  Trem2ko Grey Matter A12 125

description: processed data file: 10xaged.tsv


title: P7C8: SS2 Aged  Trem2ko Grey Matter A12 124

description: processed data file: 10xaged.tsv


title: P7C6: SS2 Aged  Trem2ko Grey Matter A12 122

description: processed data file: 10xaged.tsv


title: P7C7: SS2 Aged  Trem2ko Grey Matter A12 123

description: processed data file: 10xaged.tsv


title: P7C5: SS2 Aged  Trem2ko White Matter A12 121

description: processed data file: 10xaged.tsv


title: P7C2: SS2 Aged  Trem2ko Grey Matter A12 118

description: processed data file: 10xaged.tsv


title: P7C3: SS2 Aged  Trem2ko White Matter A12 119

description: processed data file: 10xaged.tsv


title: P7C4: SS2 Aged  Trem2ko White Matter A12 120

description: processed data file: 10xaged.tsv


title: P7C11: SS2 Aged  Trem2ko Grey Matter A12 116

description: processed data file: 10xaged.tsv


title: P7D6: SS2 Aged  Trem2ko Grey Matter A12 134

description: processed data file: 10xaged.tsv


title: P7C10: SS2 Aged  Trem2ko Grey Matter A12 115

description: processed data file: 10xaged.tsv


title: P7C12: SS2 Aged  Trem2ko Grey Matter A12 117

description: processed data file: 10xaged.tsv


title: P7B8: SS2 Aged  Trem2ko Grey Matter A12 112

description: processed data file: 10xaged.tsv


title: P7D2: SS2 Aged  Trem2ko Grey Matter A12 130

description: processed data file: 10xaged.tsv


title: P7C1: SS2 Aged  Trem2ko Grey Matter A12 114

description: processed data file: 10xaged.tsv


title: P7B9: SS2 Aged  Trem2ko Grey Matter A12 113

description: processed data file: 10xaged.tsv


title: P7B3: SS2 Aged  Trem2ko White Matter A12 109

description: processed data file: 10xaged.tsv


title: P7B5: SS2 Aged  Trem2ko White Matter A12 111

description: processed data file: 10xaged.tsv


title: P7B4: SS2 Aged  Trem2ko White Matter A12 110

description: processed data file: 10xaged.tsv


title: P7B10: SS2 Aged  Trem2ko Grey Matter A12 106

description: processed data file: 10xaged.tsv


title: P7B1: SS2 Aged  Trem2ko Grey Matter A12 105

description: processed data file: 10xaged.tsv


title: P7A8: SS2 Aged  Trem2ko Grey Matter A12 103

description: processed data file: 10xaged.tsv


title: P7A7: SS2 Aged  Trem2ko Grey Matter A12 102

description: processed data file: 10xaged.tsv


title: P7B11: SS2 Aged  Trem2ko Grey Matter A12 107

description: processed data file: 10xaged.tsv


title: P7A9: SS2 Aged  Trem2ko Grey Matter A12 104

description: processed data file: 10xaged.tsv


title: P7A6: SS2 Aged  Trem2ko Grey Matter A12 101

description: processed data file: 10xaged.tsv


title: P7A4: SS2 Aged  Trem2ko White Matter A12 100

description: processed data file: 10xaged.tsv


title: P7A2: SS2 Aged  Trem2ko Grey Matter A12 98

description: processed data file: 10xaged.tsv


title: P7A12: SS2 Aged  Trem2ko Grey Matter A12 97

description: processed data file: 10xaged.tsv


title: P7A11: SS2 Aged  Trem2ko Grey Matter A12 96

description: processed data file: 10xaged.tsv


title: P7A3: SS2 Aged  Trem2ko White Matter A12 99

description: processed data file: 10xaged.tsv


title: P6H7: SS2 Aged  Trem2ko White Matter A12 92

description: processed data file: 10xaged.tsv


title: P6H6: SS2 Aged  Trem2ko White Matter A12 91

description: processed data file: 10xaged.tsv


title: P6H4: SS2 Aged  Trem2ko White Matter A12 89

description: processed data file: 10xaged.tsv


title: P6H3: SS2 Aged  Trem2ko White Matter A12 88

description: processed data file: 10xaged.tsv


title: P6H11: SS2 Aged  Trem2ko White Matter A12 85

description: processed data file: 10xaged.tsv


title: P6H12: SS2 Aged  Trem2ko White Matter A12 86

description: processed data file: 10xaged.tsv


title: P6H2: SS2 Aged  Trem2ko Grey Matter A12 87

description: processed data file: 10xaged.tsv


title: P6H10: SS2 Aged  Trem2ko White Matter A12 84

description: processed data file: 10xaged.tsv


title: P6G9: SS2 Aged  Trem2ko White Matter A12 82

description: processed data file: 10xaged.tsv


title: P7B2: SS2 Aged  Trem2ko Grey Matter A12 108

description: processed data file: 10xaged.tsv


title: P6G8: SS2 Aged  Trem2ko White Matter A12 81

description: processed data file: 10xaged.tsv


title: P6G7: SS2 Aged  Trem2ko White Matter A12 80

description: processed data file: 10xaged.tsv


title: P6G6: SS2 Aged  Trem2ko White Matter A12 79

description: processed data file: 10xaged.tsv


title: P6H1: SS2 Aged  Trem2ko Grey Matter A12 83

description: processed data file: 10xaged.tsv


title: P6G3: SS2 Aged  Trem2ko White Matter A12 76

description: processed data file: 10xaged.tsv


title: P6G5: SS2 Aged  Trem2ko White Matter A12 78

description: processed data file: 10xaged.tsv


title: P7A1: SS2 Aged  Trem2ko Grey Matter A12 94

description: processed data file: 10xaged.tsv


title: P7A10: SS2 Aged  Trem2ko Grey Matter A12 95

description: processed data file: 10xaged.tsv


title: P6G11: SS2 Aged  Trem2ko White Matter A12 73

description: processed data file: 10xaged.tsv


title: P6G10: SS2 Aged  Trem2ko White Matter A12 72

description: processed data file: 10xaged.tsv


title: P6G2: SS2 Aged  Trem2ko Grey Matter A12 75

description: processed data file: 10xaged.tsv


title: P6F8: SS2 Aged  Trem2ko White Matter A12 69

description: processed data file: 10xaged.tsv


title: P6F9: SS2 Aged  Trem2ko White Matter A12 70

description: processed data file: 10xaged.tsv


title: P6G4: SS2 Aged  Trem2ko White Matter A12 77

description: processed data file: 10xaged.tsv


title: P6G12: SS2 Aged  Trem2ko White Matter A12 74

description: processed data file: 10xaged.tsv


title: P6G1: SS2 Aged  Trem2ko Grey Matter A12 71

description: processed data file: 10xaged.tsv


title: P6F7: SS2 Aged  Trem2ko White Matter A12 68

description: processed data file: 10xaged.tsv


title: P6H5: SS2 Aged  Trem2ko White Matter A12 90

description: processed data file: 10xaged.tsv


title: P6H8: SS2 Aged  Trem2ko White Matter A12 93

description: processed data file: 10xaged.tsv


title: P6F12: SS2 Aged  Trem2ko White Matter A12 62

description: processed data file: 10xaged.tsv


title: P6F2: SS2 Aged  Trem2ko Grey Matter A12 63

description: processed data file: 10xaged.tsv


title: P6F4: SS2 Aged  Trem2ko White Matter A12 65

description: processed data file: 10xaged.tsv


title: P6F3: SS2 Aged  Trem2ko White Matter A12 64

description: processed data file: 10xaged.tsv


title: P6F5: SS2 Aged  Trem2ko White Matter A12 66

description: processed data file: 10xaged.tsv


title: P6F11: SS2 Aged  Trem2ko White Matter A12 61

description: processed data file: 10xaged.tsv


title: P6F10: SS2 Aged  Trem2ko White Matter A12 60

description: processed data file: 10xaged.tsv


title: P6E9: SS2 Aged  Trem2ko White Matter A12 58

description: processed data file: 10xaged.tsv


title: P6F1: SS2 Aged  Trem2ko Grey Matter A12 59

description: processed data file: 10xaged.tsv


title: P6E8: SS2 Aged  Trem2ko White Matter A12 57

description: processed data file: 10xaged.tsv


title: P6E7: SS2 Aged  Trem2ko White Matter A12 56

description: processed data file: 10xaged.tsv


title: P6E6: SS2 Aged  Trem2ko White Matter A12 55

description: processed data file: 10xaged.tsv


title: P6E5: SS2 Aged  Trem2ko White Matter A12 54

description: processed data file: 10xaged.tsv


title: P6E4: SS2 Aged  Trem2ko White Matter A12 53

description: processed data file: 10xaged.tsv


title: P6F6: SS2 Aged  Trem2ko White Matter A12 67

description: processed data file: 10xaged.tsv


title: P6E2: SS2 Aged  Trem2ko Grey Matter A12 51

description: processed data file: 10xaged.tsv


title: P6E10: SS2 Aged  Trem2ko White Matter A12 48

description: processed data file: 10xaged.tsv


title: P6E11: SS2 Aged  Trem2ko White Matter A12 49

description: processed data file: 10xaged.tsv


title: P6E3: SS2 Aged  Trem2ko White Matter A12 52

description: processed data file: 10xaged.tsv


title: P6D9: SS2 Aged  Trem2ko White Matter A12 46

description: processed data file: 10xaged.tsv


title: P6E12: SS2 Aged  Trem2ko White Matter A12 50

description: processed data file: 10xaged.tsv


title: P6D6: SS2 Aged  Trem2ko White Matter A12 43

description: processed data file: 10xaged.tsv


title: P6D8: SS2 Aged  Trem2ko White Matter A12 45

description: processed data file: 10xaged.tsv


title: P6D7: SS2 Aged  Trem2ko White Matter A12 44

description: processed data file: 10xaged.tsv


title: P6D4: SS2 Aged  Trem2ko White Matter A12 41

description: processed data file: 10xaged.tsv


title: P6E1: SS2 Aged  Trem2ko Grey Matter A12 47

description: processed data file: 10xaged.tsv


title: P6D3: SS2 Aged  Trem2ko White Matter A12 40

description: processed data file: 10xaged.tsv


title: P6D2: SS2 Aged  Trem2ko Grey Matter A12 39

description: processed data file: 10xaged.tsv


title: P6D11: SS2 Aged  Trem2ko White Matter A12 38

description: processed data file: 10xaged.tsv


title: P6D5: SS2 Aged  Trem2ko White Matter A12 42

description: processed data file: 10xaged.tsv


title: P6C8: SS2 Aged  Trem2ko White Matter A12 34

description: processed data file: 10xaged.tsv


title: P6D1: SS2 Aged  Trem2ko Grey Matter A12 36

description: processed data file: 10xaged.tsv


title: P6C5: SS2 Aged  Trem2ko White Matter A12 31

description: processed data file: 10xaged.tsv


title: P6C7: SS2 Aged  Trem2ko White Matter A12 33

description: processed data file: 10xaged.tsv


title: P6C6: SS2 Aged  Trem2ko White Matter A12 32

description: processed data file: 10xaged.tsv


title: P6D10: SS2 Aged  Trem2ko White Matter A12 37

description: processed data file: 10xaged.tsv


title: P6C3: SS2 Aged  Trem2ko White Matter A12 29

description: processed data file: 10xaged.tsv


title: P6C2: SS2 Aged  Trem2ko Grey Matter A12 28

description: processed data file: 10xaged.tsv


title: P6C12: SS2 Aged  Trem2ko White Matter A12 27

description: processed data file: 10xaged.tsv


title: P6C4: SS2 Aged  Trem2ko White Matter A12 30

description: processed data file: 10xaged.tsv


title: P6C10: SS2 Aged  Trem2ko White Matter A12 25

description: processed data file: 10xaged.tsv


title: P6C1: SS2 Aged  Trem2ko Grey Matter A12 24

description: processed data file: 10xaged.tsv


title: P6B9: SS2 Aged  Trem2ko White Matter A12 23

description: processed data file: 10xaged.tsv


title: P6B8: SS2 Aged  Trem2ko White Matter A12 22

description: processed data file: 10xaged.tsv


title: P6B7: SS2 Aged  Trem2ko White Matter A12 21

description: processed data file: 10xaged.tsv


title: P6B5: SS2 Aged  Trem2ko White Matter A12 19

description: processed data file: 10xaged.tsv


title: P6B6: SS2 Aged  Trem2ko White Matter A12 20

description: processed data file: 10xaged.tsv


title: P6B4: SS2 Aged  Trem2ko White Matter A12 18

description: processed data file: 10xaged.tsv


title: P6B2: SS2 Aged  Trem2ko Grey Matter A12 16

description: processed data file: 10xaged.tsv


title: P6B10: SS2 Aged  Trem2ko White Matter A12 14

description: processed data file: 10xaged.tsv


title: P6B1: SS2 Aged  Trem2ko Grey Matter A12 13

description: processed data file: 10xaged.tsv


title: P6B11: SS2 Aged  Trem2ko White Matter A12 15

description: processed data file: 10xaged.tsv


title: P6B3: SS2 Aged  Trem2ko White Matter A12 17

description: processed data file: 10xaged.tsv


title: P6C9: SS2 Aged  Trem2ko White Matter A12 35

description: processed data file: 10xaged.tsv


title: P6A7: SS2 Aged  Trem2ko White Matter A12 10

description: processed data file: 10xaged.tsv


title: P6A5: SS2 Aged  Trem2ko White Matter A12 8

description: processed data file: 10xaged.tsv


title: P6A9: SS2 Aged  Trem2ko White Matter A12 12

description: processed data file: 10xaged.tsv


title: P6A6: SS2 Aged  Trem2ko White Matter A12 9

description: processed data file: 10xaged.tsv


title: P6A4: SS2 Aged  Trem2ko White Matter A12 7

description: processed data file: 10xaged.tsv


title: P6A3: SS2 Aged  Trem2ko White Matter A12 6

description: processed data file: 10xaged.tsv


title: P6C11: SS2 Aged  Trem2ko White Matter A12 26

description: processed data file: 10xaged.tsv


title: P6A2: SS2 Aged  Trem2ko Grey Matter A12 5

description: processed data file: 10xaged.tsv


title: P6A12: SS2 Aged  Trem2ko White Matter A12 4

description: processed data file: 10xaged.tsv


title: P6A10: SS2 Aged  Trem2ko White Matter A12 2

description: processed data file: 10xaged.tsv


title: P8H9: SS2 Aged  Trem2ko Grey Matter A11 170

description: processed data file: 10xaged.tsv


title: P8H8: SS2 Aged  Trem2ko Grey Matter A11 169

description: processed data file: 10xaged.tsv


title: P6A1: SS2 Aged  Trem2ko Grey Matter A12 1

description: processed data file: 10xaged.tsv


title: P8H7: SS2 Aged  Trem2ko Grey Matter A11 168

description: processed data file: 10xaged.tsv


title: P8H6: SS2 Aged  Trem2ko Grey Matter A11 167

description: processed data file: 10xaged.tsv


title: P8H3: SS2 Aged  Trem2ko Grey Matter A11 164

description: processed data file: 10xaged.tsv


title: P8H12: SS2 Aged  Trem2ko Grey Matter A11 162

description: processed data file: 10xaged.tsv


title: P8H4: SS2 Aged  Trem2ko Grey Matter A11 165

description: processed data file: 10xaged.tsv


title: P8H2: SS2 Aged  Trem2ko White Matter A11 163

description: processed data file: 10xaged.tsv


title: P8H5: SS2 Aged  Trem2ko Grey Matter A11 166

description: processed data file: 10xaged.tsv


title: P8H11: SS2 Aged  Trem2ko Grey Matter A11 161

description: processed data file: 10xaged.tsv


title: P8H10: SS2 Aged  Trem2ko Grey Matter A11 160

description: processed data file: 10xaged.tsv


title: P8H1: SS2 Aged  Trem2ko White Matter A11 159

description: processed data file: 10xaged.tsv


title: P8G9: SS2 Aged  Trem2ko Grey Matter A11 158

description: processed data file: 10xaged.tsv


title: P6A11: SS2 Aged  Trem2ko White Matter A12 3

description: processed data file: 10xaged.tsv


title: P6A8: SS2 Aged  Trem2ko White Matter A12 11

description: processed data file: 10xaged.tsv


title: P8G2: SS2 Aged  Trem2ko White Matter A11 151

description: processed data file: 10xaged.tsv


title: P8G3: SS2 Aged  Trem2ko Grey Matter A11 152

description: processed data file: 10xaged.tsv


title: P8G6: SS2 Aged  Trem2ko Grey Matter A11 155

description: processed data file: 10xaged.tsv


title: P8G11: SS2 Aged  Trem2ko Grey Matter A11 149

description: processed data file: 10xaged.tsv


title: P8G1: SS2 Aged  Trem2ko White Matter A11 147

description: processed data file: 10xaged.tsv


title: P8F8: SS2 Aged  Trem2ko Grey Matter A11 145

description: processed data file: 10xaged.tsv


title: P8F4: SS2 Aged  Trem2ko Grey Matter A11 141

description: processed data file: 10xaged.tsv


title: P8G8: SS2 Aged  Trem2ko Grey Matter A11 157

description: processed data file: 10xaged.tsv


title: P8G10: SS2 Aged  Trem2ko Grey Matter A11 148

description: processed data file: 10xaged.tsv


title: P8G7: SS2 Aged  Trem2ko Grey Matter A11 156

description: processed data file: 10xaged.tsv


title: P8F7: SS2 Aged  Trem2ko Grey Matter A11 144

description: processed data file: 10xaged.tsv


title: P8G12: SS2 Aged  Trem2ko Grey Matter A11 150

description: processed data file: 10xaged.tsv


title: P8F9: SS2 Aged  Trem2ko Grey Matter A11 146

description: processed data file: 10xaged.tsv


title: P8G4: SS2 Aged  Trem2ko Grey Matter A11 153

description: processed data file: 10xaged.tsv


title: P8F5: SS2 Aged  Trem2ko Grey Matter A11 142

description: processed data file: 10xaged.tsv


title: P8F2: SS2 Aged  Trem2ko White Matter A11 139

description: processed data file: 10xaged.tsv


title: P8G5: SS2 Aged  Trem2ko Grey Matter A11 154

description: processed data file: 10xaged.tsv


title: P8F6: SS2 Aged  Trem2ko Grey Matter A11 143

description: processed data file: 10xaged.tsv


title: P8F1: SS2 Aged  Trem2ko White Matter A11 136

description: processed data file: 10xaged.tsv


title: P8E8: SS2 Aged  Trem2ko Grey Matter A11 134

description: processed data file: 10xaged.tsv


title: P8E7: SS2 Aged  Trem2ko Grey Matter A11 133

description: processed data file: 10xaged.tsv


title: P8F10: SS2 Aged  Trem2ko Grey Matter A11 137

description: processed data file: 10xaged.tsv


title: P8E9: SS2 Aged  Trem2ko Grey Matter A11 135

description: processed data file: 10xaged.tsv


title: P8E6: SS2 Aged  Trem2ko Grey Matter A11 132

description: processed data file: 10xaged.tsv


title: P8F12: SS2 Aged  Trem2ko Grey Matter A11 138

description: processed data file: 10xaged.tsv


title: P8E5: SS2 Aged  Trem2ko Grey Matter A11 131

description: processed data file: 10xaged.tsv


title: P8E3: SS2 Aged  Trem2ko Grey Matter A11 129

description: processed data file: 10xaged.tsv


title: P8E2: SS2 Aged  Trem2ko White Matter A11 128

description: processed data file: 10xaged.tsv


title: P8F3: SS2 Aged  Trem2ko Grey Matter A11 140

description: processed data file: 10xaged.tsv


title: P8E12: SS2 Aged  Trem2ko Grey Matter A11 127

description: processed data file: 10xaged.tsv


title: P8E10: SS2 Aged  Trem2ko Grey Matter A11 125

description: processed data file: 10xaged.tsv


title: P8E11: SS2 Aged  Trem2ko Grey Matter A11 126

description: processed data file: 10xaged.tsv


title: P8D7: SS2 Aged  Trem2ko Grey Matter A11 123

description: processed data file: 10xaged.tsv


title: P8D6: SS2 Aged  Trem2ko Grey Matter A11 122

description: processed data file: 10xaged.tsv


title: P8D4: SS2 Aged  Trem2ko Grey Matter A11 120

description: processed data file: 10xaged.tsv


title: P8D1: SS2 Aged  Trem2ko White Matter A11 115

description: processed data file: 10xaged.tsv


title: P8D5: SS2 Aged  Trem2ko Grey Matter A11 121

description: processed data file: 10xaged.tsv


title: P8D10: SS2 Aged  Trem2ko Grey Matter A11 116

description: processed data file: 10xaged.tsv


title: P8C8: SS2 Aged  Trem2ko Grey Matter A11 113

description: processed data file: 10xaged.tsv


title: P8D3: SS2 Aged  Trem2ko Grey Matter A11 119

description: processed data file: 10xaged.tsv


title: P8C7: SS2 Aged  Trem2ko Grey Matter A11 112

description: processed data file: 10xaged.tsv


title: P8C9: SS2 Aged  Trem2ko Grey Matter A11 114

description: processed data file: 10xaged.tsv


title: P8C6: SS2 Aged  Trem2ko Grey Matter A11 111

description: processed data file: 10xaged.tsv


title: P8E4: SS2 Aged  Trem2ko Grey Matter A11 130

description: processed data file: 10xaged.tsv


title: P8C5: SS2 Aged  Trem2ko Grey Matter A11 110

description: processed data file: 10xaged.tsv


title: P8C4: SS2 Aged  Trem2ko Grey Matter A11 109

description: processed data file: 10xaged.tsv


title: P8C10: SS2 Aged  Trem2ko Grey Matter A11 106

description: processed data file: 10xaged.tsv


title: P8C11: SS2 Aged  Trem2ko Grey Matter A11 107

description: processed data file: 10xaged.tsv


title: P8B9: SS2 Aged  Trem2ko Grey Matter A11 104

description: processed data file: 10xaged.tsv


title: P8B7: SS2 Aged  Trem2ko Grey Matter A11 103

description: processed data file: 10xaged.tsv


title: P8B4: SS2 Aged  Trem2ko Grey Matter A11 101

description: processed data file: 10xaged.tsv


title: P8B3: SS2 Aged  Trem2ko Grey Matter A11 100

description: processed data file: 10xaged.tsv


title: P8B1: SS2 Aged  Trem2ko White Matter A11 99

description: processed data file: 10xaged.tsv


title: P8D2: SS2 Aged  Trem2ko White Matter A11 118

description: processed data file: 10xaged.tsv


title: P8D11: SS2 Aged  Trem2ko Grey Matter A11 117

description: processed data file: 10xaged.tsv


title: P5H9: SS2 Aged  Trem2ko White Matter A11 96

description: processed data file: 10xaged.tsv


title: P8A3: SS2 Aged  Trem2ko Grey Matter A11 97

description: processed data file: 10xaged.tsv


title: P5H5: SS2 Aged  Trem2ko White Matter A11 92

description: processed data file: 10xaged.tsv


title: P5H4: SS2 Aged  Trem2ko White Matter A11 91

description: processed data file: 10xaged.tsv


title: P5H8: SS2 Aged  Trem2ko White Matter A11 95

description: processed data file: 10xaged.tsv


title: P5H6: SS2 Aged  Trem2ko White Matter A11 93

description: processed data file: 10xaged.tsv


title: P8C2: SS2 Aged  Trem2ko White Matter A11 108

description: processed data file: 10xaged.tsv


title: P5H3: SS2 Aged  Trem2ko White Matter A11 90

description: processed data file: 10xaged.tsv


title: P8C1: SS2 Aged  Trem2ko White Matter A11 105

description: processed data file: 10xaged.tsv


title: P5H2: SS2 Aged  Trem2ko Grey Matter A11 89

description: processed data file: 10xaged.tsv


title: P5H11: SS2 Aged  Trem2ko White Matter A11 87

description: processed data file: 10xaged.tsv


title: P5G9: SS2 Aged  Trem2ko White Matter A11 85

description: processed data file: 10xaged.tsv


title: P5G7: SS2 Aged  Trem2ko White Matter A11 83

description: processed data file: 10xaged.tsv


title: P5G8: SS2 Aged  Trem2ko White Matter A11 84

description: processed data file: 10xaged.tsv


title: P8B5: SS2 Aged  Trem2ko Grey Matter A11 102

description: processed data file: 10xaged.tsv


title: P5H10: SS2 Aged  Trem2ko White Matter A11 86

description: processed data file: 10xaged.tsv


title: P5H12: SS2 Aged  Trem2ko White Matter A11 88

description: processed data file: 10xaged.tsv


title: P5G6: SS2 Aged  Trem2ko White Matter A11 82

description: processed data file: 10xaged.tsv


title: P5G12: SS2 Aged  Trem2ko White Matter A11 78

description: processed data file: 10xaged.tsv


title: P5G3: SS2 Aged  Trem2ko White Matter A11 80

description: processed data file: 10xaged.tsv


title: P5G2: SS2 Aged  Trem2ko Grey Matter A11 79

description: processed data file: 10xaged.tsv


title: P5G11: SS2 Aged  Trem2ko White Matter A11 77

description: processed data file: 10xaged.tsv


title: P5F9: SS2 Aged  Trem2ko White Matter A11 75

description: processed data file: 10xaged.tsv


title: P5F5: SS2 Aged  Trem2ko White Matter A11 73

description: processed data file: 10xaged.tsv


title: P8E1: SS2 Aged  Trem2ko White Matter A11 124

description: processed data file: 10xaged.tsv


title: P5F3: SS2 Aged  Trem2ko White Matter A11 71

description: processed data file: 10xaged.tsv


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description: processed data file: 10xaged.tsv


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title: P5C11: SS2 Aged  Trem2ko White Matter A11 40

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title: P4C5: SS2 Aged  Trem2ko White Matter A11 5

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title: P4C4: SS2 Aged  Trem2ko White Matter A11 4

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title: 43553_1_D5: SS2 Aged  Trem2ko Grey Matter A9 9

description: processed data file: 10xaged.tsv


title: 43553_1_D7: SS2 Aged  Trem2ko Grey Matter A9 10

description: processed data file: 10xaged.tsv


title: 43553_1_E5: SS2 Aged  Trem2ko Grey Matter A9 12

description: processed data file: 10xaged.tsv


title: 43553_1_C7: SS2 Aged  Trem2ko Grey Matter A9 8

description: processed data file: 10xaged.tsv


title: 43553_1_B7: SS2 Aged  Trem2ko Grey Matter A9 5

description: processed data file: 10xaged.tsv


title: 43553_1_B6: SS2 Aged  Trem2ko Grey Matter A9 4

description: processed data file: 10xaged.tsv


title: 43553_1_B5: SS2 Aged  Trem2ko Grey Matter A9 3

description: processed data file: 10xaged.tsv


title: 43553_1_A6: SS2 Aged  Trem2ko Grey Matter A9 2

description: processed data file: 10xaged.tsv


title: 43553_1_A5: SS2 Aged  Trem2ko Grey Matter A9 1

description: processed data file: 10xaged.tsv


title: 43553_3_H4: SS2 Aged  Trem2ko White Matter A8 62

description: processed data file: 10xaged.tsv


title: 43553_2_A7: SS2 Aged  Trem2ko White Matter A9 27

description: processed data file: 10xaged.tsv


title: 43553_3_H2: SS2 Aged  Trem2ko Grey Matter A8 61

description: processed data file: 10xaged.tsv


title: 43553_3_F2: SS2 Aged  Trem2ko Grey Matter A8 59

description: processed data file: 10xaged.tsv


title: 43553_3_E3: SS2 Aged  Trem2ko White Matter A8 57

description: processed data file: 10xaged.tsv


title: 43553_3_E4: SS2 Aged  Trem2ko White Matter A8 58

description: processed data file: 10xaged.tsv


title: 43553_3_D4: SS2 Aged  Trem2ko White Matter A8 55

description: processed data file: 10xaged.tsv


title: 43553_3_D3: SS2 Aged  Trem2ko White Matter A8 54

description: processed data file: 10xaged.tsv


title: 43553_3_C4: SS2 Aged  Trem2ko White Matter A8 53

description: processed data file: 10xaged.tsv


title: 43553_3_E2: SS2 Aged  Trem2ko Grey Matter A8 56

description: processed data file: 10xaged.tsv


title: 43553_3_C3: SS2 Aged  Trem2ko White Matter A8 52

description: processed data file: 10xaged.tsv


title: 43553_3_C2: SS2 Aged  Trem2ko Grey Matter A8 51

description: processed data file: 10xaged.tsv


title: 43553_3_B4: SS2 Aged  Trem2ko White Matter A8 50

description: processed data file: 10xaged.tsv


title: 43553_1_C6: SS2 Aged  Trem2ko Grey Matter A9 7

description: processed data file: 10xaged.tsv


title: 43553_3_B3: SS2 Aged  Trem2ko White Matter A8 49

description: processed data file: 10xaged.tsv


title: 43553_3_B2: SS2 Aged  Trem2ko Grey Matter A8 48

description: processed data file: 10xaged.tsv


title: 43553_3_B1: SS2 Aged  Trem2ko Grey Matter A8 47

description: processed data file: 10xaged.tsv


title: 43553_3_A2: SS2 Aged  Trem2ko Grey Matter A8 45

description: processed data file: 10xaged.tsv


title: 43553_3_A3: SS2 Aged  Trem2ko White Matter A8 46

description: processed data file: 10xaged.tsv


title: 43553_3_A1: SS2 Aged  Trem2ko Grey Matter A8 44

description: processed data file: 10xaged.tsv


title: 43553_1_C5: SS2 Aged  Trem2ko Grey Matter A9 6

description: processed data file: 10xaged.tsv


title: 43553_2_H4: SS2 Aged  Trem2ko White Matter A8 43

description: processed data file: 10xaged.tsv


title: 43553_2_H3: SS2 Aged  Trem2ko White Matter A8 42

description: processed data file: 10xaged.tsv


title: 43553_2_H2: SS2 Aged  Trem2ko White Matter A8 41

description: processed data file: 10xaged.tsv


title: 43553_2_G4: SS2 Aged  Trem2ko White Matter A8 40

description: processed data file: 10xaged.tsv


title: 43553_2_F4: SS2 Aged  Trem2ko White Matter A8 37

description: processed data file: 10xaged.tsv


title: 43553_2_G2: SS2 Aged  Trem2ko White Matter A8 38

description: processed data file: 10xaged.tsv


title: 43553_2_G3: SS2 Aged  Trem2ko White Matter A8 39

description: processed data file: 10xaged.tsv


title: 43553_2_F3: SS2 Aged  Trem2ko White Matter A8 36

description: processed data file: 10xaged.tsv


title: 43553_2_F2: SS2 Aged  Trem2ko White Matter A8 35

description: processed data file: 10xaged.tsv


title: 43553_2_F1: SS2 Aged  Trem2ko White Matter A8 34

description: processed data file: 10xaged.tsv


title: 43553_3_F4: SS2 Aged  Trem2ko White Matter A8 60

description: processed data file: 10xaged.tsv


title: 43553_2_E3: SS2 Aged  Trem2ko White Matter A8 32

description: processed data file: 10xaged.tsv


title: 43553_2_E2: SS2 Aged  Trem2ko White Matter A8 31

description: processed data file: 10xaged.tsv


title: 43553_2_D1: SS2 Aged  Trem2ko White Matter A8 29

description: processed data file: 10xaged.tsv


title: 43553_2_E1: SS2 Aged  Trem2ko White Matter A8 30

description: processed data file: 10xaged.tsv


title: 43553_2_C2: SS2 Aged  Trem2ko White Matter A8 27

description: processed data file: 10xaged.tsv


title: 43553_2_C3: SS2 Aged  Trem2ko White Matter A8 28

description: processed data file: 10xaged.tsv


title: 43553_2_C1: SS2 Aged  Trem2ko White Matter A8 26

description: processed data file: 10xaged.tsv