title: Neutrophils from blood of ICH patient number 2287 on day 1 of study - replicate 1

description:
ICHSeq7gandtPA_C06
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2287 on day 1 of study - replicate 1

status: Public on Feb 19 2021

type: SRA

city: New Haven

first: Lauren

last: Sansing

state: CT

address: 300 George Street, suite 353

country: USA

institute: Yale School of Medicine

description:
ICHSeq7gandtPA_D01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv

library_source: transcriptomic

data_processing:
Following sequencing, BAM files were converted to merged, demultiplexed FASTQs. Paired-end reads were mapped to the UCSC hg19 genome using STAR and RSEM.
Aligned expression matrices generated by STAR were first filtered based on read depth and captured gene depth to remove low quality samples. A minimum of 4 x 106 FASTQ fragments and a minimum of 9,000 (for monocytes/MDMs) or 8,500 (for neutrophils) captured genes were used as inclusion criteria.
filtered counts from technical replicates were collapsed together using the “edgeR” pipeline prior to generation of a log-FPKM gene expression matrix
Samples lacking patient metadata or occurring later than 171h post-ICH were excluded, removing two additional samples for each cell type. Genes with fewer than 1 count per million (CPM) in greater than 80% of the samples of a given cell type were considered unexpressed and filtered out prior to downstream analysis.
Trimmed mean of M values library size normalization of was used to account for differences in sequenced reads between samples; normalized library sizes were used for frequency estimation in generation of log-FPKM matrices.
edgeR was used to convert counts matrices to FPKM expression matrices;  gene lengths used for this are in the "gene_lengths.txt" file. Log-fpkm+1 matrices were generated from these using base R.
To generate "monos_log_fpkm_techreps_collapsed.csv" and "grans_log_fpkm_techreps_collapsed.csv", filtered counts from technical replicates were collapsed together using the “edgeR” pipeline prior to generation of a log-FPKM gene expression matrix.
Genome_build: UCSC hg19
Supplementary_files_format_and_content: [monos_counts.csv]  comma separated text file of raw counts of CD14+ monos/macs gene expression
[monos_log_fpkm_all_samples.csv]  comma separated text file of log Fragments Per Kilobase of transcript per Million mapped reads (log FPKM) from all monos/macs samples, including technical replicates
[monos_log_fpkm_techreps_collapsed.csv]  comma separated text file of log Fragments Per Kilobase of transcript per Million mapped reads (log FPKM) from monos/macs samples. Technical replicates were collapsed together by adding together their counts prior to generation of log-FPKM.
[neuts_counts.csv]  comma separated text file of raw counts of neutrophils gene expression
[neuts_log_fpkm_all_samples.csv]  comma separated text file of log Fragments Per Kilobase of transcript per Million mapped reads (log FPKM) from all neutrophils samples, including technical replicates
[neuts_log_fpkm_techreps_collapsed.csv]  comma separated text file of log Fragments Per Kilobase of transcript per Million mapped reads (log FPKM) from neutrophils samples. Technical replicates were collapsed together by adding together their counts prior to generation of log-FPKM.
[gene_lengths.txt]  tab-delimited text file containing gene names, lengths, and "effective lengths" accounting for differences in how likely that gene is to generate a mappable fragment.

molecule: total RNA

organism: Homo sapiens

source_name: hematoma

extract_protocol:
CD14 monos/macs and neutrophils were sorted from purified leukocytes preparations directly into RA1 cell lysis buffer and RNA was isolated using NucleoSpin RNA XS kit (Macherey-Nagel, #740902).
Smart-Seq2 cDNA synthesis was performed with the following modifications: 1) input RNA was normalized prior to cDNA generation by diluting to ~1,000 cells per reaction, 2) reverse transcription was performed with Superscript III (ThermoFisher, #18080-085) in place of Superscript II according to the manufacturer instructions. Paired-end sequencing libraries were prepared using the Nextera XT DNA sample Prep Kit (Illumina, #FC-131) according to the manufacturer’s instructions.

tag: cell type

value: neuts

tag: batch

value: F

tag: patientid

tag: day of trial

tag: hrs after symptom onset

tag: techrep

tag: senot determined

value: Male

tag: race

value: White

tag: age

tag: nih stroke score

tag: glasgow coma score

tag: initial ich volume

tag: adjusted disease severity index

tag: modified rankin score at 1 year post-ich

tag: 1 yr gcs <4

value: TRUE


title: Neutrophils from blood of ICH patient number 2215 on day 5 of study - replicate 1

description:
ICHSeqBatch1g_C09
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv

source_name: blood

value: G

value: FALSE


title: Neutrophils from HC blood of ICH patient number HC067371 on day 1 of study - replicate 2

description:
ICHseqBatch4g_D05
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv

source_name: HC blood

value: J

value: XXXX


title: Neutrophils from hematoma of ICH patient number 2215 on day 5 of study - replicate 2

description:
ICHSeqBatch1g_D07
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2215 on day 4 of study - replicate 2

description:
ICHSeqBatch1g_D06
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2215 on day 4 of study - replicate 1

description:
ICHSeqBatch1g_C08
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2215 on day 3 of study - replicate 1

description:
ICHSeqBatch1g_C07
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2215 on day 3 of study - replicate 1

description:
ICHSeqBatch1g_D01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2215 on day 5 of study - replicate 1

description:
ICHSeqBatch1g_D03
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from HC blood of ICH patient number HC067591 on day 1 of study - replicate 1

description:
ICHseqBatch4g_B01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2215 on day 3 of study - replicate 2

description:
ICHSeqBatch1g_D05
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2215 on day 2 of study - replicate 1

description:
ICHSeqBatch1g_C12
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from HC blood of ICH patient number HC067076 on day 1 of study - replicate 1

description:
ICHSeq7gandtPA_D09
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2215 on day 1 of study - replicate 1

description:
ICHSeqBatch1g_C05
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2129 on day 5 of study - replicate 1

description:
ICHseqBatch2g_D02
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv

value: H


title: Neutrophils from hematoma of ICH patient number 2215 on day 1 of study - replicate 2

description:
ICHSeqBatch1g_D04
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2129 on day 5 of study - replicate 2

description:
ICHseqBatch2g_D03
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2215 on day 1 of study - replicate 1

description:
ICHSeqBatch1g_C11
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2215 on day 2 of study - replicate 1

description:
ICHSeqBatch1g_C06
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2129 on day 4 of study - replicate 2

description:
ICHseqBatch2g_D01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2215 on day 2 of study - replicate 2

description:
ICHSeqBatch1g_C10
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2129 on day 5 of study - replicate 1

description:
ICHseqBatch2g_D07
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2129 on day 3 of study - replicate 1

description:
ICHseqBatch2g_C10
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2129 on day 4 of study - replicate 1

description:
ICHseqBatch2g_D06
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2129 on day 4 of study - replicate 1

description:
ICHseqBatch2g_C12
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2129 on day 3 of study - replicate 2

description:
ICHseqBatch2g_D09
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2129 on day 3 of study - replicate 1

description:
ICHseqBatch2g_D05
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2129 on day 2 of study - replicate 2

description:
ICHseqBatch2g_C09
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2385 on day 4 of study - replicate 2

description:
ICHSeqBatch1g_B12
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv

value: Female


title: Neutrophils from blood of ICH patient number 2129 on day 2 of study - replicate 1

description:
ICHseqBatch2g_D04
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2129 on day 2 of study - replicate 1

description:
ICHseqBatch2g_C08
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2385 on day 3 of study - replicate 2

description:
ICHSeqBatch1g_C03
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2385 on day 3 of study - replicate 1

description:
ICHSeqBatch1g_B09
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2385 on day 2 of study - replicate 2

description:
ICHSeqBatch1g_B08
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2385 on day 4 of study - replicate 1

description:
ICHSeqBatch1g_B11
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2385 on day 2 of study - replicate 2

description:
ICHSeqBatch1g_C02
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2385 on day 2 of study - replicate 1

description:
ICHSeqBatch1g_B07
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2385 on day 4 of study - replicate 1

description:
ICHSeqBatch1g_C04
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2385 on day 2 of study - replicate 1

description:
ICHSeqBatch1g_C01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2385 on day 1 of study - replicate 2

description:
ICHSeqBatch1g_B06
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2385 on day 1 of study - replicate 1

description:
ICHSeqBatch1g_B05
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2131 on day 4 of study - replicate 1

description:
ICHseqBatch5g_D02
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv

value: K


title: Neutrophils from blood of ICH patient number 2131 on day 5 of study - replicate 1

description:
ICHseqBatch5g_D03
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2131 on day 4 of study - replicate 2

description:
ICHseqBatch5g_D07
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2129 on day 3 of study - replicate 2

description:
ICHseqBatch2g_C11
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2131 on day 3 of study - replicate 2

description:
ICHseqBatch5g_D12
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2131 on day 3 of study - replicate 1

description:
ICHseqBatch5g_D10
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2131 on day 3 of study - replicate 1

description:
ICHseqBatch5g_D01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2131 on day 2 of study - replicate 2

description:
ICHseqBatch5g_D05
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2131 on day 3 of study - replicate 2

description:
ICHseqBatch5g_D06
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2131 on day 1 of study - replicate 2

description:
ICHseqBatch5g_D11
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2421 on day 4 of study - replicate 2

description:
ICHseqBatch2g_B12
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv

value: African-American


title: Neutrophils from blood of ICH patient number 2421 on day 5 of study - replicate 1

description:
ICHseqBatch2g_C05
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2421 on day 4 of study - replicate 1

description:
ICHseqBatch2g_C04
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2385 on day 3 of study - replicate 2

description:
ICHSeqBatch1g_B10
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2421 on day 4 of study - replicate 2

description:
ICHseqBatch2g_C07
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2421 on day 3 of study - replicate 2

description:
ICHseqBatch2g_B11
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2421 on day 1 of study - replicate 1

description:
ICHseqBatch2g_C01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2421 on day 2 of study - replicate 1

description:
ICHseqBatch2g_C02
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2421 on day 2 of study - replicate 1

description:
ICHseqBatch2g_B06
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2404 on day 4 of study - replicate 1

description:
ICHseqBatch5g_E04
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2404 on day 3 of study - replicate 1

description:
ICHseqBatch5g_E03
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2421 on day 3 of study - replicate 1

description:
ICHseqBatch2g_C03
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2404 on day 2 of study - replicate 2

description:
ICHseqBatch5g_E11
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2421 on day 2 of study - replicate 2

description:
ICHseqBatch2g_B10
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2421 on day 1 of study - replicate 1

description:
ICHseqBatch2g_B05
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2421 on day 3 of study - replicate 1

description:
ICHseqBatch2g_B07
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2421 on day 3 of study - replicate 2

description:
ICHseqBatch2g_C06
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2421 on day 1 of study - replicate 2

description:
ICHseqBatch2g_B09
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2404 on day 1 of study - replicate 2

description:
ICHseqBatch5g_E10
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2404 on day 1 of study - replicate 1

description:
ICHseqBatch5g_E08
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2404 on day 2 of study - replicate 1

description:
ICHseqBatch5g_E02
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2404 on day 2 of study - replicate 2

description:
ICHseqBatch5g_E07
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2404 on day 2 of study - replicate 1

description:
ICHseqBatch5g_E09
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2404 on day 1 of study - replicate 2

description:
ICHseqBatch5g_E06
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2133 on day 2 of study - replicate 1

description:
ICHseqBatch5g_C02
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2404 on day 1 of study - replicate 1

description:
ICHseqBatch5g_E01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2133 on day 5 of study - replicate 1

description:
ICHseqBatch5g_C05
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2133 on day 4 of study - replicate 1

description:
ICHseqBatch5g_C04
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2133 on day 4 of study - replicate 2

description:
ICHseqBatch5g_C07
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2131 on day 1 of study - replicate 1

description:
ICHseqBatch5g_D08
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2133 on day 3 of study - replicate 1

description:
ICHseqBatch5g_C03
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2331 on day 4 of study - replicate 1

description:
ICHseqBatch4g_D10
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2133 on day 1 of study - replicate 1

description:
ICHseqBatch5g_C08
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2133 on day 1 of study - replicate 1

description:
ICHseqBatch5g_C01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2331 on day 3 of study - replicate 2

description:
ICHseqBatch4g_D02
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2331 on day 3 of study - replicate 2

description:
ICHseqBatch4g_D11
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2331 on day 1 of study - replicate 2

description:
ICHseqBatch4g_C10
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2026 on day 5 of study - replicate 1

description:
ICHseqBatch3g_D05
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv

value: I


title: Neutrophils from blood of ICH patient number 2331 on day 2 of study - replicate 2

description:
ICHseqBatch4g_D12
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2331 on day 1 of study - replicate 1

description:
ICHseqBatch4g_D03
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2331 on day 2 of study - replicate 1

description:
ICHseqBatch4g_D07
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2026 on day 4 of study - replicate 1

description:
ICHseqBatch3g_D02
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2026 on day 3 of study - replicate 2

description:
ICHseqBatch3g_C05
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2331 on day 2 of study - replicate 2

description:
ICHseqBatch4g_D01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2026 on day 3 of study - replicate 2

description:
ICHseqBatch3g_C10
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2331 on day 3 of study - replicate 1

description:
ICHseqBatch4g_D08
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2331 on day 1 of study - replicate 1

description:
ICHseqBatch4g_C09
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2026 on day 2 of study - replicate 1

description:
ICHseqBatch3g_C09
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2026 on day 3 of study - replicate 1

description:
ICHseqBatch3g_D03
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2026 on day 2 of study - replicate 2

description:
ICHseqBatch3g_D04
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2331 on day 3 of study - replicate 1

description:
ICHseqBatch4g_C12
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2026 on day 2 of study - replicate 2

description:
ICHseqBatch3g_C06
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2457 on day 2 of study - replicate 2

description:
ICHseqBatch4g_A11
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2026 on day 2 of study - replicate 1

description:
ICHseqBatch3g_D01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2457 on day 2 of study - replicate 1

description:
ICHseqBatch4g_A07
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2026 on day 1 of study - replicate 1

description:
ICHseqBatch3g_C03
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2026 on day 4 of study - replicate 2

description:
ICHseqBatch3g_C04
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2026 on day 4 of study - replicate 1

description:
ICHseqBatch3g_C07
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2457 on day 5 of study - replicate 1

description:
ICHseqBatch4g_A05
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2457 on day 3 of study - replicate 2

description:
ICHseqBatch4g_A12
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2457 on day 3 of study - replicate 1

description:
ICHseqBatch4g_A09
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2457 on day 3 of study - replicate 2

description:
ICHseqBatch4g_A06
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2457 on day 3 of study - replicate 1

description:
ICHseqBatch4g_A03
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2457 on day 4 of study - replicate 2

description:
ICHseqBatch4g_A08
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2457 on day 2 of study - replicate 1

description:
ICHseqBatch4g_A02
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2457 on day 1 of study - replicate 1

description:
ICHseqBatch4g_A01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2184 on day 5 of study - replicate 1

description:
ICHseqBatch3g_B08
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2184 on day 3 of study - replicate 2

description:
ICHseqBatch3g_A01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2184 on day 4 of study - replicate 2

description:
ICHseqBatch3g_A08
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2184 on day 2 of study - replicate 1

description:
ICHseqBatch3g_B05
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2457 on day 4 of study - replicate 1

description:
ICHseqBatch4g_A04
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2184 on day 4 of study - replicate 1

description:
ICHseqBatch3g_C01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2184 on day 2 of study - replicate 2

description:
ICHseqBatch3g_A12
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2184 on day 1 of study - replicate 2

description:
ICHseqBatch3g_A11
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2184 on day 2 of study - replicate 2

description:
ICHseqBatch3g_A09
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2449 on day 2 of study - replicate 2

description:
ICHseqBatch5g_B02
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv

value: Asian


title: Neutrophils from blood of ICH patient number 2449 on day 3 of study - replicate 1

description:
ICHseqBatch5g_B08
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2449 on day 4 of study - replicate 1

description:
ICHseqBatch5g_B09
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2184 on day 1 of study - replicate 1

description:
ICHseqBatch3g_B04
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2449 on day 3 of study - replicate 2

description:
ICHseqBatch5g_B12
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2184 on day 1 of study - replicate 1

description:
ICHseqBatch3g_C02
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2184 on day 1 of study - replicate 2

description:
ICHseqBatch3g_A10
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2449 on day 2 of study - replicate 2

description:
ICHseqBatch5g_B11
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2449 on day 5 of study - replicate 1

description:
ICHseqBatch5g_B10
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2449 on day 2 of study - replicate 1

description:
ICHseqBatch5g_B01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2449 on day 2 of study - replicate 1

description:
ICHseqBatch5g_B07
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2449 on day 1 of study - replicate 1

description:
ICHseqBatch5g_B06
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2379 on day 5 of study - replicate 2

description:
ICHSeqBatch1g_A12
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2379 on day 5 of study - replicate 1

description:
ICHSeqBatch1g_A05
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2379 on day 4 of study - replicate 1

description:
ICHSeqBatch1g_A08
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2379 on day 5 of study - replicate 1

description:
ICHSeqBatch1g_B04
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2379 on day 4 of study - replicate 1

description:
ICHSeqBatch1g_A04
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2379 on day 3 of study - replicate 2

description:
ICHSeqBatch1g_A11
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2379 on day 3 of study - replicate 1

description:
ICHSeqBatch1g_A10
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2379 on day 2 of study - replicate 2

description:
ICHSeqBatch1g_B01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2379 on day 3 of study - replicate 1

description:
ICHSeqBatch1g_A03
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2046 on day 4 of study - replicate 1

description:
ICHseqBatch3g_B02
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2379 on day 2 of study - replicate 1

description:
ICHSeqBatch1g_B02
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2046 on day 4 of study - replicate 2

description:
ICHseqBatch3g_B03
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2379 on day 2 of study - replicate 2

description:
ICHSeqBatch1g_A07
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2379 on day 2 of study - replicate 1

description:
ICHSeqBatch1g_A02
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2379 on day 1 of study - replicate 1

description:
ICHSeqBatch1g_A01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2046 on day 3 of study - replicate 2

description:
ICHseqBatch3g_A05
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2046 on day 3 of study - replicate 2

description:
ICHseqBatch3g_A04
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2046 on day 3 of study - replicate 1

description:
ICHseqBatch3g_B01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2046 on day 2 of study - replicate 1

description:
ICHseqBatch3g_B07
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2046 on day 2 of study - replicate 2

description:
ICHseqBatch3g_A03
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2046 on day 1 of study - replicate 2

description:
ICHseqBatch3g_A07
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2046 on day 1 of study - replicate 1

description:
ICHseqBatch3g_B06
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2046 on day 3 of study - replicate 1

description:
ICHseqBatch3g_B10
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2046 on day 2 of study - replicate 2

description:
ICHseqBatch3g_A06
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2046 on day 4 of study - replicate 1

description:
ICHseqBatch3g_B11
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2132 on day 5 of study - replicate 1

description:
ICHseqBatch4g_C01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2132 on day 4 of study - replicate 2

description:
ICHseqBatch4g_C03
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2046 on day 2 of study - replicate 1

description:
ICHseqBatch3g_B09
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2132 on day 3 of study - replicate 2

description:
ICHseqBatch4g_C02
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2132 on day 3 of study - replicate 1

description:
ICHseqBatch4g_B11
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2132 on day 4 of study - replicate 1

description:
ICHseqBatch4g_B12
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2379 on day 3 of study - replicate 2

description:
ICHSeqBatch1g_A06
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2132 on day 2 of study - replicate 1

description:
ICHseqBatch4g_B10
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2132 on day 1 of study - replicate 1

description:
ICHseqBatch4g_B09
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2375 on day 4 of study - replicate 2

description:
ICHseqBatch2g_A10
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2375 on day 5 of study - replicate 1

description:
ICHseqBatch2g_B02
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2375 on day 4 of study - replicate 1

description:
ICHseqBatch2g_A07
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2375 on day 4 of study - replicate 2

description:
ICHseqBatch2g_B04
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2375 on day 3 of study - replicate 2

description:
ICHseqBatch2g_A06
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2375 on day 2 of study - replicate 1

description:
ICHseqBatch2g_A03
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2375 on day 3 of study - replicate 1

description:
ICHseqBatch2g_A12
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of healthy control number HC067724 on day 1 of study - replicate 1

description:
ICHSeqBatch7redo_A04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv

value: monos

value: C


title: Neutrophils from hematoma of ICH patient number 2375 on day 3 of study - replicate 1

description:
ICHseqBatch2g_A05
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv

value: neuts


title: Neutrophils from hematoma of ICH patient number 2375 on day 1 of study - replicate 2

description:
ICHseqBatch2g_A02
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: Neutrophils from hematoma of ICH patient number 2375 on day 2 of study - replicate 2

description:
ICHseqBatch2g_A04
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of healthy control number HC067371 on day 1 of study - replicate 1

description:
ICHSeqBatch7redo_A02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2375 on day 3 of study - replicate 2

description:
ICHseqBatch2g_B03
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of healthy control number HC067591 on day 1 of study - replicate 1

description:
ICHSeqBatch7redo_A06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2287 on day 3 of study - replicate 1

description:
ICHSeqBatch6redo_D03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv

value: B


title: CD14+ monos/macs from hematoma of ICH patient number 2287 on day 3 of study - replicate 2

description:
ICHSeqBatch6redo_D05
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv

value: Male


title: CD14+ monos/macs from blood of ICH patient number 2287 on day 5 of study - replicate 1

description:
ICHSeqBatch6redo_D10
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv

value: White


title: CD14+ monos/macs from blood of healthy control number HC067076 on day 1 of study - replicate 1

description:
ICHSeqBatch7redo_A05
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2287 on day 2 of study - replicate 2

description:
ICHSeqBatch6redo_D04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv

value: TRUE


title: CD14+ monos/macs from blood of ICH patient number 2287 on day 3 of study - replicate 1

description:
ICHSeqBatch6redo_D08
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2287 on day 2 of study - replicate 1

description:
ICHSeqBatch6redo_D02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2287 on day 1 of study - replicate 1

description:
ICHSeqBatch6redo_D06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2236 on day 1 of study - replicate 2

description:
ICHSeqBatch9_C04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv

value: E


title: CD14+ monos/macs from hematoma of ICH patient number 2287 on day 1 of study - replicate 1

description:
ICHSeqBatch6redo_D01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2287 on day 2 of study - replicate 1

description:
ICHSeqBatch6redo_D07
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2375 on day 4 of study - replicate 1

description:
ICHseqBatch2g_B01
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv

value: FALSE


title: CD14+ monos/macs from blood of ICH patient number 2215 on day 5 of study - replicate 1

description:
ICHSeqBatch5redo_C06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv

value: A


title: CD14+ monos/macs from hematoma of ICH patient number 2215 on day 5 of study - replicate 1

description:
ICHSeqBatch5redo_C12
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2215 on day 4 of study - replicate 2

description:
ICHSeqBatch5redo_D02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: Neutrophils from blood of ICH patient number 2375 on day 2 of study - replicate 1

description:
ICHseqBatch2g_A11
neuts_counts.csv
neuts_log_fpkm_all_samples.csv
neuts_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of healthy control number HC067973 on day 1 of study - replicate 1

description:
ICHSeqBatch7redo_A01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv

value: XXXX


title: CD14+ monos/macs from blood of ICH patient number 2287 on day 4 of study - replicate 1

description:
ICHSeqBatch6redo_D09
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2215 on day 4 of study - replicate 1

description:
ICHSeqBatch5redo_C05
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2215 on day 2 of study - replicate 1

description:
ICHSeqBatch5redo_C09
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2215 on day 2 of study - replicate 1

description:
ICHSeqBatch5redo_C03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2215 on day 3 of study - replicate 1

description:
ICHSeqBatch5redo_C04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2215 on day 3 of study - replicate 2

description:
ICHSeqBatch5redo_C07
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2215 on day 1 of study - replicate 1

description:
ICHSeqBatch5redo_C02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2215 on day 3 of study - replicate 1

description:
ICHSeqBatch5redo_C10
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2129 on day 5 of study - replicate 1

description:
ICHSeqBatch6redo_C11
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2215 on day 4 of study - replicate 1

description:
ICHSeqBatch5redo_C11
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2215 on day 1 of study - replicate 1

description:
ICHSeqBatch5redo_C08
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2129 on day 4 of study - replicate 1

description:
ICHSeqBatch6redo_C10
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2129 on day 4 of study - replicate 2

description:
ICHSeqBatch6redo_C06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2129 on day 3 of study - replicate 1

description:
ICHSeqBatch6redo_C03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2215 on day 5 of study - replicate 2

description:
ICHSeqBatch5redo_D03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2236 on day 1 of study - replicate 1

description:
ICHSeqBatch9_C03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2129 on day 5 of study - replicate 2

description:
ICHSeqBatch6redo_C07
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2129 on day 3 of study - replicate 1

description:
ICHSeqBatch6redo_C09
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2129 on day 2 of study - replicate 1

description:
ICHSeqBatch6redo_C08
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2129 on day 2 of study - replicate 1

description:
ICHSeqBatch6redo_C02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2385 on day 4 of study - replicate 2

description:
ICHSeqBatch5redo_C01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2385 on day 4 of study - replicate 1

description:
ICHSeqBatch5redo_B05
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2385 on day 4 of study - replicate 1

description:
ICHSeqBatch5redo_B12
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2385 on day 3 of study - replicate 2

description:
ICHSeqBatch5redo_B11
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2385 on day 3 of study - replicate 1

description:
ICHSeqBatch5redo_B10
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2385 on day 3 of study - replicate 2

description:
ICHSeqBatch5redo_B06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2385 on day 3 of study - replicate 1

description:
ICHSeqBatch5redo_B04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2385 on day 2 of study - replicate 2

description:
ICHSeqBatch5redo_B09
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2385 on day 2 of study - replicate 1

description:
ICHSeqBatch5redo_B08
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2129 on day 5 of study - replicate 1

description:
ICHSeqBatch6redo_C05
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2385 on day 2 of study - replicate 1

description:
ICHSeqBatch5redo_B03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2385 on day 1 of study - replicate 1

description:
ICHSeqBatch5redo_B02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2129 on day 4 of study - replicate 1

description:
ICHSeqBatch6redo_C04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2131 on day 3 of study - replicate 1

description:
ICHSeqBatch9_D03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2131 on day 2 of study - replicate 1

description:
ICHSeqBatch9_C08
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2131 on day 1 of study - replicate 2

description:
ICHSeqBatch9_D02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2131 on day 3 of study - replicate 1

description:
ICHSeqBatch9_C09
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2131 on day 2 of study - replicate 2

description:
ICHSeqBatch9_C12
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2131 on day 4 of study - replicate 1

description:
ICHSeqBatch9_C10
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2131 on day 1 of study - replicate 1

description:
ICHSeqBatch9_D01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2421 on day 3 of study - replicate 2

description:
ICHSeqBatch6redo_B06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2421 on day 4 of study - replicate 2

description:
ICHSeqBatch6redo_B07
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2421 on day 3 of study - replicate 1

description:
ICHSeqBatch6redo_B02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2421 on day 4 of study - replicate 1

description:
ICHSeqBatch6redo_B03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2131 on day 1 of study - replicate 1

description:
ICHSeqBatch9_C07
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2421 on day 3 of study - replicate 2

description:
ICHSeqBatch6redo_C01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2421 on day 2 of study - replicate 1

description:
ICHSeqBatch6redo_B01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2421 on day 2 of study - replicate 2

description:
ICHSeqBatch6redo_B05
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2421 on day 1 of study - replicate 2

description:
ICHSeqBatch6redo_B04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2421 on day 3 of study - replicate 1

description:
ICHSeqBatch6redo_B10
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2421 on day 2 of study - replicate 1

description:
ICHSeqBatch6redo_B09
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2421 on day 1 of study - replicate 1

description:
ICHSeqBatch6redo_B08
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2404 on day 4 of study - replicate 1

description:
ICHSeqBatch9_B03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2404 on day 3 of study - replicate 1

description:
ICHSeqBatch9_B02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2404 on day 2 of study - replicate 1

description:
ICHSeqBatch9_B07
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2131 on day 5 of study - replicate 1

description:
ICHSeqBatch9_C11
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2385 on day 1 of study - replicate 1

description:
ICHSeqBatch5redo_B07
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2404 on day 2 of study - replicate 1

description:
ICHSeqBatch9_B01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2404 on day 2 of study - replicate 2

description:
ICHSeqBatch9_B08
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2404 on day 1 of study - replicate 1

description:
ICHSeqBatch9_B06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2404 on day 1 of study - replicate 2

description:
ICHSeqBatch9_B05
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2133 on day 5 of study - replicate 1

description:
ICHSeqBatch7redo_B06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2133 on day 3 of study - replicate 2

description:
ICHSeqBatch7redo_B05
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2133 on day 4 of study - replicate 1

description:
ICHSeqBatch7redo_B04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2133 on day 2 of study - replicate 1

description:
ICHSeqBatch7redo_B02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2133 on day 1 of study - replicate 2

description:
ICHSeqBatch7redo_A10
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2444 on day 3 of study - replicate 2

description:
ICHSeqBatch9_B12
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2133 on day 1 of study - replicate 1

description:
ICHSeqBatch7redo_B01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2133 on day 1 of study - replicate 1

description:
ICHSeqBatch7redo_A09
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2444 on day 3 of study - replicate 1

description:
ICHSeqBatch9_B09
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2444 on day 4 of study - replicate 1

description:
ICHSeqBatch9_B10
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2444 on day 5 of study - replicate 1

description:
ICHSeqBatch9_B11
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2331 on day 3 of study - replicate 2

description:
ICHbatch8_C03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv

value: D


title: CD14+ monos/macs from hematoma of ICH patient number 2331 on day 3 of study - replicate 1

description:
ICHbatch8_C06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv

value: Female


title: CD14+ monos/macs from blood of ICH patient number 2331 on day 3 of study - replicate 1

description:
ICHbatch8_B10
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2331 on day 4 of study - replicate 1

description:
ICHbatch8_B11
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2331 on day 2 of study - replicate 1

description:
ICHbatch8_B09
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2331 on day 1 of study - replicate 1

description:
ICHbatch8_C04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2331 on day 1 of study - replicate 1

description:
ICHbatch8_B08
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2331 on day 2 of study - replicate 1

description:
ICHbatch8_C05
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2026 on day 5 of study - replicate 1

description:
ICHSeqBatch7redo_E06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2026 on day 4 of study - replicate 2

description:
ICHSeqBatch7redo_E08
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2026 on day 4 of study - replicate 1

description:
ICHSeqBatch7redo_E04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2026 on day 4 of study - replicate 1

description:
ICHSeqBatch7redo_E01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2026 on day 5 of study - replicate 2

description:
ICHSeqBatch7redo_A08
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2404 on day 1 of study - replicate 1

description:
ICHSeqBatch9_A12
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2026 on day 3 of study - replicate 1

description:
ICHSeqBatch7redo_E03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2133 on day 2 of study - replicate 1

description:
ICHSeqBatch7redo_A11
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2133 on day 3 of study - replicate 1

description:
ICHSeqBatch7redo_B03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2444 on day 5 of study - replicate 2

description:
ICHSeqBatch9_C01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2444 on day 3 of study - replicate 1

description:
ICHSeqBatch9_C02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2026 on day 3 of study - replicate 1

description:
ICHSeqBatch7redo_D12
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2026 on day 2 of study - replicate 1

description:
ICHSeqBatch7redo_E02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2331 on day 2 of study - replicate 2

description:
ICHbatch8_C02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2457 on day 4 of study - replicate 1

description:
ICHbatch8_B01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2457 on day 3 of study - replicate 2

description:
ICHbatch8_B06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2457 on day 5 of study - replicate 1

description:
ICHbatch8_B02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2026 on day 1 of study - replicate 1

description:
ICHSeqBatch7redo_D10
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2457 on day 3 of study - replicate 1

description:
ICHbatch8_B05
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2457 on day 1 of study - replicate 1

description:
ICHbatch8_A10
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2457 on day 3 of study - replicate 1

description:
ICHbatch8_A12
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2026 on day 2 of study - replicate 1

description:
ICHSeqBatch7redo_D11
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2184 on day 5 of study - replicate 1

description:
ICHSeqBatch7redo_D02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2184 on day 3 of study - replicate 1

description:
ICHSeqBatch7redo_D06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2184 on day 4 of study - replicate 1

description:
ICHSeqBatch7redo_D08
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2449 on day 5 of study - replicate 1

description:
ICHSeqBatch9_A05
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2184 on day 1 of study - replicate 1

description:
ICHSeqBatch7redo_D04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2184 on day 2 of study - replicate 1

description:
ICHSeqBatch7redo_D01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2449 on day 2 of study - replicate 2

description:
ICHSeqBatch9_A09
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2184 on day 1 of study - replicate 2

description:
ICHSeqBatch7redo_D03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2449 on day 2 of study - replicate 1

description:
ICHSeqBatch9_A08
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2449 on day 1 of study - replicate 2

description:
ICHSeqBatch9_A06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2449 on day 3 of study - replicate 1

description:
ICHSeqBatch9_A03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2449 on day 4 of study - replicate 1

description:
ICHSeqBatch9_A04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2145 on day 4 of study - replicate 2

description:
ICHSeqBatch9_D11
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2026 on day 2 of study - replicate 2

description:
ICHSeqBatch7redo_E07
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2449 on day 2 of study - replicate 2

description:
ICHSeqBatch9_A07
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2449 on day 2 of study - replicate 1

description:
ICHSeqBatch9_A02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2145 on day 4 of study - replicate 2

description:
ICHSeqBatch9_D07
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2457 on day 2 of study - replicate 1

description:
ICHbatch8_B04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2026 on day 2 of study - replicate 2

description:
ICHSeqBatch7redo_A07
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2145 on day 4 of study - replicate 1

description:
ICHSeqBatch9_D05
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2184 on day 4 of study - replicate 2

description:
ICHSeqBatch7redo_D07
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2145 on day 3 of study - replicate 2

description:
ICHSeqBatch9_D10
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2145 on day 3 of study - replicate 1

description:
ICHSeqBatch9_D08
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2145 on day 3 of study - replicate 2

description:
ICHSeqBatch9_D06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2145 on day 3 of study - replicate 1

description:
ICHSeqBatch9_D04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2379 on day 5 of study - replicate 1

description:
ICHSeqBatch5redo_A12
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2379 on day 5 of study - replicate 1

description:
ICHSeqBatch5redo_A05
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2379 on day 4 of study - replicate 2

description:
ICHSeqBatch5redo_A11
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2379 on day 4 of study - replicate 1

description:
ICHSeqBatch5redo_A10
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2379 on day 4 of study - replicate 1

description:
ICHSeqBatch5redo_A04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2379 on day 3 of study - replicate 2

description:
ICHSeqBatch5redo_A06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2379 on day 3 of study - replicate 1

description:
ICHSeqBatch5redo_A03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2379 on day 2 of study - replicate 1

description:
ICHSeqBatch5redo_A08
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2145 on day 4 of study - replicate 1

description:
ICHSeqBatch9_D09
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2046 on day 3 of study - replicate 2

description:
ICHSeqBatch6redo_A11
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2046 on day 4 of study - replicate 1

description:
ICHSeqBatch6redo_A04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2046 on day 3 of study - replicate 1

description:
ICHSeqBatch6redo_A03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2379 on day 1 of study - replicate 1

description:
ICHSeqBatch5redo_A01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2046 on day 2 of study - replicate 2

description:
ICHSeqBatch6redo_A05
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2046 on day 3 of study - replicate 1

description:
ICHSeqBatch6redo_A09
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2379 on day 2 of study - replicate 1

description:
ICHSeqBatch5redo_A02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2046 on day 2 of study - replicate 1

description:
ICHSeqBatch6redo_A02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2046 on day 4 of study - replicate 2

description:
ICHSeqBatch6redo_A06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2046 on day 1 of study - replicate 1

description:
ICHSeqBatch6redo_A01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2046 on day 2 of study - replicate 1

description:
ICHSeqBatch6redo_A08
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2379 on day 5 of study - replicate 2

description:
ICHSeqBatch5redo_B01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2132 on day 3 of study - replicate 1

description:
ICHbatch8_A03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2132 on day 5 of study - replicate 1

description:
ICHbatch8_A05
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2132 on day 3 of study - replicate 1

description:
ICHbatch8_A08
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2132 on day 2 of study - replicate 1

description:
ICHbatch8_A02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2132 on day 3 of study - replicate 2

description:
ICHbatch8_A06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2480 on day 6 of study - replicate 1

description:
ICHSeqBatch7redo_C04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2132 on day 1 of study - replicate 1

description:
ICHbatch8_A07
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2132 on day 1 of study - replicate 2

description:
ICHbatch8_A09
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2480 on day 5 of study - replicate 1

description:
ICHSeqBatch7redo_C03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2132 on day 1 of study - replicate 1

description:
ICHbatch8_A01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2480 on day 6 of study - replicate 1

description:
ICHSeqBatch7redo_C09
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2046 on day 1 of study - replicate 1

description:
ICHSeqBatch6redo_A07
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2480 on day 4 of study - replicate 2

description:
ICHSeqBatch7redo_C11
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2480 on day 4 of study - replicate 1

description:
ICHSeqBatch7redo_C07
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2480 on day 3 of study - replicate 2

description:
ICHSeqBatch7redo_C10
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2480 on day 3 of study - replicate 2

description:
ICHSeqBatch7redo_C05
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2480 on day 3 of study - replicate 1

description:
ICHSeqBatch7redo_C01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2480 on day 3 of study - replicate 1

description:
ICHSeqBatch7redo_C06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2375 on day 4 of study - replicate 1

description:
ICHSeqBatch5redo_D07
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2375 on day 3 of study - replicate 2

description:
ICHSeqBatch5redo_E04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2375 on day 5 of study - replicate 1

description:
ICHSeqBatch5redo_E03
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2375 on day 4 of study - replicate 2

description:
ICHSeqBatch5redo_D11
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2375 on day 4 of study - replicate 1

description:
ICHSeqBatch5redo_E02
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2132 on day 4 of study - replicate 1

description:
ICHbatch8_A04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2375 on day 2 of study - replicate 1

description:
ICHSeqBatch5redo_D05
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2375 on day 3 of study - replicate 1

description:
ICHSeqBatch5redo_E01
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from blood of ICH patient number 2375 on day 2 of study - replicate 1

description:
ICHSeqBatch5redo_D12
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2375 on day 3 of study - replicate 2

description:
ICHSeqBatch5redo_D10
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2375 on day 2 of study - replicate 2

description:
ICHSeqBatch5redo_D09
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: CD14+ monos/macs from hematoma of ICH patient number 2375 on day 1 of study - replicate 1

description:
ICHSeqBatch5redo_D04
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv


title: Mac_M38_RNA33_S48

city: Hanover

first: Katja

last: Koeppen

state: NH

address: 504 Remsen

institute: Geisel School of Medicine at Dartmouth

data_processing:
Raw reads were processed with fastp (version 0.20.0) to trim off PolyA tails from the 3’ end and the first 12 bp from the 5’ end to eliminate mismatched bases introduced by the random primer used to prime the second strand synthesis.
Trimmed reads were aligned to the human reference transcriptome (version GRCh38) using Salmon (version 0.14.1).
The R package tximport (version 1.18.0) was used to create gene level counts from Salmon output.
TMM normalized log2 counts were generated with edgeR (version 3.32.0).
Genome_build: GRCh38
Supplementary_files_format_and_content: comma separated text file with raw gene counts for every gene and every sample
Supplementary_files_format_and_content: comma separated text file with log2 TMM normalized gene counts for expressed genes and all samples

source_name: primary monocyte derived macrophages (MDM)

growth_protocol: Monocytes were differentiated into monocyte derived macrophages (MDM) by incubation with M-CSF (100 ng/ml) for 7 days in RPMI medium.

extract_protocol:
Total RNA was isolated with the miRNeasy kit (Qiagen).
Sequencing libraries were prepared using the QuantSeq 3' mRNA-seq Library Prep Kit FWD for Illumina (Lexogen, Greenland, NH) with 200 ng RNA as input.

treatment_protocol: MDM were switched to serum-free RPMI medium immediately prior to treatment with 2*109/ml EV, EV-PA, or an equivalent volume of PBS as a vehicle control for 24 hours.

value: M-CSF differentiated monocyte derived macrophages

tag: mdm genotype

value: WT

tag: mdm donor

tag: treatment

value: Ctrl


title: CD14+ monos/macs from hematoma of ICH patient number 2375 on day 1 of study - replicate 2

description:
ICHSeqBatch5redo_D08
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv

tag: cell type

tag: batch


title: Mac_M38_RNA32_S9


title: Mac_M38_RNA31_S8


title: Mac_M38_RNA11_S47

tag: ev genotype

tag: ev donor


title: Mac_M38_RNA10_S46

value: EV


title: Mac_M38_RNA05_S44


title: Mac_M38_RNA07_S36


title: Mac_M38_RNA08_S45


title: CD14+ monos/macs from hematoma of ICH patient number 2375 on day 3 of study - replicate 1

description:
ICHSeqBatch5redo_D06
monos_counts.csv
monos_log_fpkm_all_samples.csv
monos_log_fpkm_techreps_collapsed.csv

value: monos

tag: patientid

tag: day of trial

tag: hrs after symptom onset

tag: techrep


title: Mac_M38_RNA02_S42


title: Mac_M38_RNA01_S41


title: Mac_F29_RNA07_S52


title: Mac_F29_RNA04_S23


title: Mac_F29_RNA01_S49


title: Mac_F29_RNA05_S51


title: Mac_F29_RNA02_S50


title: Mac_F25_RNA25_S7


title: Mac_F29_RNA08_S53


title: Mac_F29_RNA21_S54


title: Mac_F25_RNA26_S40


title: Mac_F25_RNA27_S22


title: Mac_F25_RNA04_S2


title: Mac_F25_RNA08_S39


title: Mac_F25_RNA07_S38


title: Mac_F25_RNA02_S1


title: Mac_F25_RNA05_S3


title: CF_Mac_M32_RNA24_S26

value: CF


title: Mac_F25_RNA01_S37


title: CF_Mac_M32_RNA23_S25


title: CF_Mac_M32_RNA11_S20


title: CF_Mac_M32_RNA12_S21


title: Mac_M38_RNA04_S43


title: CF_Mac_M32_RNA09_S18


title: CF_Mac_M32_RNA07_S16


title: CF_Mac_M32_RNA08_S17


title: CF_Mac_M31_RNA22_S13


title: CF_Mac_M31_RNA23_S14


title: CF_Mac_M31_RNA12_S12


title: CF_Mac_M31_RNA10_S10


title: CF_Mac_M31_RNA11_S11


title: CF_Mac_M31_RNA09_S6


title: CF_Mac_M31_RNA08_S5


title: CF_Mac_M31_RNA07_S4


title: CF_Mac_M24_RNA15_S35


title: CF_Mac_M24_RNA14_S34


title: CF_Mac_M24_RNA13_S33


title: CF_Mac_M24_RNA11_S31


title: CF_Mac_M24_RNA09_S29


title: CF_Mac_M24_RNA08_S28


title: CF_Mac_M32_RNA22_S24


title: CF_Mac_M24_RNA10_S30


title: CF_Mac_M24_RNA12_S32


title: IFN siMettl3/14 RIBO rep3

city: New York

first: Christopher

middle: E

last: Mason

address: 1305 York Ave

department: Physiology and Biophysics

institute: Weill Cornell Medical College

description:
Ribosome protected RNA Fragment
RIBO_M314_rep3
DEseq_RIBO_siMettl314_vs_siCTRL.txt
RIBOseq_siCTRL_IFN_vs_M314_IFN_countMatrix

data_processing:
Library strategy: Ribo-Seq
Reads trimmed with Cutadapt 2.10
Trimmed Reads alignmed to hg38 with STAR 2.7.5
Fragments uniquely mapped to each gene counted with featureCounts
Count matrix was generated from featureCounts output with python script
DEseq was used to caluclate fold change of counts per gene between two conditions
Genome_build: hg38
Supplementary_files_format_and_content: Tab delimited text files include log2FC

source_name: Huh7 cells

growth_protocol: Huh7 cells were grown at 37C with 5% CO2 in DMEM supplemented with 10% FBS, 1X minimum essential medium non-essential amino acids, and 25 mM HEPES

extract_protocol:
For RNA-seq, cells were harvested in TRIzol and RNA was extracted by manufacturer protocol, after which TURBO DNase treatment was performed and RNA was phenol-chloform precipitated. For Ribo-seq, cells were lysed in polysome lysis buffer and cytoplasmic lysates were clarified by centrifugation, then ribosome protected fragments were generated by micrococcal nuclease treatment. Monosome fractions were isolated by sucrose gradient ultracentrifugation, and RPF RNA was size-selected on TBE urea gels, eluted, T4 PNK treated, and phenol-chloform extracted.
For RNA-seq, libraries were prepared using the KAPA Stranded mRNA-Seq Kit. For Ribo-seq, libraries were prepared using the NEB Next Small RNA Library Prep Kit.

treatment_protocol: siRNAs were transfected for 36 hours using Lipofectamine RNAiMax, after which cells were treated with IFN-β at 50 units/mL or mock treatment

value: Interferon

tag: sirna


title: IFN siMettl3/14 RIBO rep4

description:
Ribosome protected RNA Fragment
RIBO_M314_rep4
DEseq_RIBO_siMettl314_vs_siCTRL.txt
RIBOseq_siCTRL_IFN_vs_M314_IFN_countMatrix


title: IFN siMettl3/14 RIBO rep2

description:
Ribosome protected RNA Fragment
RIBO_M314_rep2
DEseq_RIBO_siMettl314_vs_siCTRL.txt
RIBOseq_siCTRL_IFN_vs_M314_IFN_countMatrix


title: IFN siCTRL RIBO rep3

description:
Ribosome protected RNA Fragment
RIBO_CTRL_rep3
DEseq_RIBO_siMettl314_vs_siCTRL.txt
RIBOseq_siCTRL_IFN_vs_M314_IFN_countMatrix

value: siCTRL


title: CF_Mac_M32_RNA10_S19


title: IFN siCTRL RIBO rep4

description:
Ribosome protected RNA Fragment
RIBO_CTRL_rep4
DEseq_RIBO_siMettl314_vs_siCTRL.txt
RIBOseq_siCTRL_IFN_vs_M314_IFN_countMatrix


title: IFN siCTRL RIBO rep2

description:
Ribosome protected RNA Fragment
RIBO_CTRL_rep2
DEseq_RIBO_siMettl314_vs_siCTRL.txt
RIBOseq_siCTRL_IFN_vs_M314_IFN_countMatrix


title: IFN siMettl3/14 RIBO rep1

description:
Ribosome protected RNA Fragment
RIBO_M314_rep1
DEseq_RIBO_siMettl314_vs_siCTRL.txt
RIBOseq_siCTRL_IFN_vs_M314_IFN_countMatrix


title: CF_Mac_M31_RNA24_S15


title: IFN siCTRL RIBO rep1

description:
Ribosome protected RNA Fragment
RIBO_CTRL_rep1
DEseq_RIBO_siMettl314_vs_siCTRL.txt
RIBOseq_siCTRL_IFN_vs_M314_IFN_countMatrix


title: VilCreER APCfl/+ - 1 [Apc.tum.1]

city: Glasgow

first: Andrew

last: Campbell

address: Switchback Road

country: United Kingdom

institute: CRUK Beatson Institute

data_processing:
Raw sequence quality was assessed using FastQC and FastQC_screen with the following option: --subset 50
Sequences were aligned to mouse genome build GRCm38.75 using Tophat2 with the following options: --segment length 18 -r 228 --no-coverage-search
Raw counts per gene were determined using Htseq-count with the following options: --mode=intersection-nonempty --stranded=no --type=exon --idattr=gene_id -f bam
Genome_build: GRCm38.75
Supplementary_files_format_and_content: Raw counts matrix

organism: Mus musculus

source_name: Adenoma grown from small intestinal tissue subjected to tamoxifen induced genetic recombination in vivo

extract_protocol:
RNA extraction perfomed with Qiagen RNeasy kit using Qiagen protocols
Libraries for cluster generation and DNA sequencing were prepared following a previously described method (Fisher et al. 2011) using TruSeq RNA sample prep kit v2 (Illumina)
The libraries were run on Illumina Next Seq using the High Output 75 cycles kit (2x36 cycles, paired end reads, single index)

tag: strain background

tag: genotype

value: VilCreER+ APCfl/+

tag: tissue

value: Small intestinal adenoma


title: VilCreER APCfl/+ - 2 [Apc.tum.2]


title: VilCreER APCfl/+ - 3 [Apc.tum.3]


title: VilCreER - 3 [WT.3]

source_name: Small intestinal tissue subjected to tamoxifen induced genetic recombination in vivo

value: VilCreER+

value: Small intestine


title: CF_Mac_M24_RNA07_S27


title: VilCreER - 1 [WT.1]


title: VilCreER APCfl/+ - 4 [Apc.tum.4]


title: VilCreER APCfl/+ - 5 [Apc.tum.5]


title: VilCreER - 2 [WT.2]


title: Chuong754: Mm WT dorsal dermis RNA-seq

city: Los Angeles

first: Hans I-Chen

last: Harn

state: CA

address: 2011 Zonal Ave. HMR304

institute: University of Southern California

data_processing:
Low quality of sequencing bases were trimmed based on the Phred+33 quality score (> 20) from both of the 5'- and 3'-ends of reads. After trimming, reads are discarded, if they are shorter than 30bp, or have one or more ambiguous base.
The mouse mm10 reference genome, and RefSeq genome annotation downloaded from the UCSC Genome Browser on 5 June, 2019 were used for RNA-Seq analysis
The alignment, quantification, normalization, and differential expression analysis were performed by STAR 2.4.1d, htseq-count 0.6.0, TMM, and edgeR 3, respectively.
Genes with count-per-million (CPM) values above 1 in at least two samples were retained, and genes with no or low expression levels were discarded.
Genome_build: UCSC mm10
Supplementary_files_format_and_content: The tab-delimited text files: 25 files with count values of 24500 genes for each sample produced by htseq-count

molecule: polyA RNA

source_name: dorsal dermis

extract_protocol:
TRIzol
Illumina TruSeq RNA sample Prep kit v2 / Illumina TruSeq Stranded mRNA library prep kit

value: dorsal dermis

tag: post-wound day (pwd)

tag: region

value: Center

tag: quality score

tag: rna-seq read type

value: Strand-specific single-end 75bp


title: Chuong786: Mm WT dorsal dermis RNA-seq

value: Margin


title: Chuong782: Mm WT dorsal dermis RNA-seq


title: Chuong755: Mm WT dorsal dermis RNA-seq


title: Chuong753: Mm WT dorsal dermis RNA-seq


title: Chuong781: Mm WT dorsal dermis RNA-seq


title: Chuong757: Mm KO dorsal dermis RNA-seq

value: KO


title: Chuong758: Mm KO dorsal dermis RNA-seq


title: Chuong806: Mm WT dorsal epidermis RNA-seq

source_name: dorsal epidermis

value: dorsal epidermis

value: Strand-specific paired-end 75bp


title: Chuong808: Mm WT dorsal epidermis RNA-seq

value: WT


title: Chuong785: Mm WT dorsal dermis RNA-seq


title: Chuong812: Mm WT dorsal epidermis RNA-seq


title: Chuong813: Mm WT dorsal epidermis RNA-seq


title: Eed_ZsG_pos_mTEChi_01_bulk_seq_repl

city: Oxford

first: Adam

last: Handel

address: John Radcliffe Hospital

department: Weatherall Institute of Molecular Medicine

institute: University of Oxford

data_processing:
QC was performed using FastQC and Trimmomatic
RNA-seq reads were aligned using HISAT (version 0.1.6) and ChIP-seq peaks were pre-aligned using BWA (version 0.5.9) and Stampy (--bamkeepgoodreads)
Single cell RNA-seq outliers were identified using robust PCA on alignment proportion, ERCC92 spike-in proportion, number of detectable genes, proportion of reads mapping to protein-coding genes, proportion of mitochondrial transcripts, proportion of ribosomal transcripts, 3’ to 5’ coverage bias, transcriptomic variance, cell-to-mean correlation, the proportion of the library accounted for by the top 500 transcripts and GC content
RNA-seq reads were assigned to genes using HTSeq (intersection non-empty)
ChIP-seq bigWig profiles were generated using MACS2 on deduplicated BAM files with MAPQ >10
Genome_build: mm10
Supplementary_files_format_and_content: Tab delimited files include counts for RNA-seq samples and bigWig files show ChIP/input signal for ChIP-seq samples

source_name: mTEChi

extract_protocol:
Thymic lobes were cleaned from fatty tissues and incubated with Liberase and DNaseI (Roche Diagnostics; 200μg/ml and 30μg/ml, respectively; 45min, 37ºC) to obtain a cell suspension which was subsequently filtered through a nylon mesh (100micro pore size, Sefar Nitex) to remove debris. TEC were sorted and then RNA was either isolated from ~1,000 cells or single cells using the SMART-seq2 protocol. TEC for ChIP-seq were treated as detailed in Žuklys S et al. Nature Immunology 2016:17(10):1206-1215
RNA-seq libraries were prepared using the appropriate Illumina kit for SMART-seq2 or HiSeq2500 (ChIP-seq). Nextera adapters were used for single cell RNA-seq and ChIP-seq.

tag: strain

tag: sample type

value: bulk

tag: zsgreen status

value: positive


title: WT_mTEChi_03_R03_bulk_seq_repl

value: negative


title: Eed_ZsG_neg_mTEChi_04_bulk_seq_repl


title: Eed_ZsG_pos_mTEChi_04_bulk_seq_repl


title: Eed_ZsG_pos_mTEChi_03_bulk_seq_repl


title: Eed_ZsG_pos_mTEChi_02_bulk_seq_repl


title: WT_mTEChi_01_R02_bulk_seq_repl


title: WT_mTEChi_02_R02_bulk_seq_repl


title: WT_mTEChi_02_R01_bulk_seq_repl


title: WT_mTEChi_01_R01_bulk_seq_repl


title: WT_mTEChi_02_R03_bulk_seq_repl


title: WT_mTEChi_03_R01_bulk_seq_repl


title: WT_mTEChi_01_R03_bulk_seq_repl


title: WT_mTEChi_03_R02_bulk_seq_repl


title: Eed_ZsG_neg_mTEChi_03_bulk_seq_repl


title: Eed_ZsG_neg_mTEChi_01_bulk_seq_repl


title: WT_mTEChi_02_R03_bulk


title: mTEChi_K27me3-2

description: mTEChi_K27me3-1_merged_signal_mapq_10_FE.bw

library_source: genomic

molecule: genomic DNA

value: H3K27me3 IP