title: scATAC for Thymus cells, DP-4241


title: scATAC for Thymus cells, DP-4243

status: Public on Feb 13 2021

type: SRA

city: Hefei

first: Kun

last: Qu

address: University of Science and Technology of China, No.96, JinZhai Road Baohe District

country: China

description:
scATAC for Thymus cells
scATAC_Accesson.txt

library_source: genomic

data_processing:
Sequences were aligned using Cell Ranger version 1.3.1 from 10x Genomics with default parameters.
The GRCm38.p5 assembly was used as the reference genome, and ribosomal RNA, mitochondrial RNA (Mt-RNA) and pseudogenes were removed.
Cells with fewer than 500 detected genes and more than 4500 detected genes for which total mitochondrial gene expression exceeded 40% were removed. Genes that were expressed in fewer than three cells were also removed.
Quantile normalization was performed using qnorm in R.
Genome_build: hg38
Supplementary_files_format_and_content: 10x_log2_q_norm.txt - tab-delimited text file includes quantile normalized gene expression values for each cell
Supplementary_files_format_and_content: scATAC_Accesson.txt - tab delimited text file includes normalized accesson count values predicted by APEC for each cell

molecule: genomic DNA

organism: Mus musculus

source_name: Double positive T cells

extract_protocol:
Thymus tissues were harvested from mice aged 6 - 8 weeks and gently ground in 1 mL of RPMI-1640.
Single cells were captured in droplet emulsions using a GemCode Single-Cell Instrument (10x Genomics), and scRNA-seq libraries were constructed with the 10x Genomics protocol using a GemCode Single-Cell 3′ Gel Bead and Library V2 Kit. The libraries were sequenced using a HiSeq X-10 Sequencing System (Illumina). scATAC-seq experiments were performed as previously described by Li B et al, Genome Biology, 2020.

tag: age

value: 7 weeks

tag: Sex

value: male

tag: tissue

value: Thymus


title: scATAC for Thymus cells, DP-4245

institute: University of Science and Technology of China


title: scATAC for Thymus cells, DP-4242


title: scATAC for Thymus cells, DP-4246


title: scATAC for Thymus cells, DP-4240


title: scATAC for Thymus cells, DP-4244


title: scATAC for Thymus cells, DP-4236


title: scATAC for Thymus cells, DP-4239


title: scATAC for Thymus cells, DP-4247


title: scATAC for Thymus cells, DP-4234


title: scATAC for Thymus cells, DP-4238


title: scATAC for Thymus cells, DP-4232


title: scATAC for Thymus cells, DP-4231


title: scATAC for Thymus cells, DP-4235


title: scATAC for Thymus cells, DP-4237


title: scATAC for Thymus cells, DP-4279


title: scATAC for Thymus cells, DP-4233


title: scATAC for Thymus cells, DP-4249


title: scATAC for Thymus cells, DP-4230


title: scATAC for Thymus cells, DP-4227


title: scATAC for Thymus cells, DP-4228


title: scATAC for Thymus cells, DP-3032


title: scATAC for Thymus cells, DP-4226


title: scATAC for Thymus cells, DP-3031


title: scATAC for Thymus cells, DP-4225


title: scATAC for Thymus cells, DP-3030


title: scATAC for Thymus cells, DP-3029


title: scATAC for Thymus cells, DP-3028


title: scATAC for Thymus cells, DP-3027


title: scATAC for Thymus cells, DP-4229


title: scATAC for Thymus cells, DP-3009


title: scATAC for Thymus cells, DP-3019


title: scATAC for Thymus cells, DP-3014


title: scATAC for Thymus cells, DP-3015


title: scATAC for Thymus cells, DP-3020


title: scATAC for Thymus cells, DP-3016


title: scATAC for Thymus cells, DP-3023


title: scATAC for Thymus cells, DP-3011


title: scATAC for Thymus cells, DP-3010


title: scATAC for Thymus cells, DP-3012


title: scATAC for Thymus cells, DP-3008


title: scATAC for Thymus cells, DP-3017


title: scATAC for Thymus cells, DP-3022


title: scATAC for Thymus cells, DP-3026


title: scATAC for Thymus cells, DP-3024


title: scATAC for Thymus cells, DP-3018


title: scATAC for Thymus cells, DP-3006


title: scATAC for Thymus cells, DP-3004


title: scATAC for Thymus cells, DP-3003


title: scATAC for Thymus cells, DP-3005


title: scATAC for Thymus cells, DP-3002


title: scATAC for Thymus cells, DN-2031

source_name: Double negative T cells


title: scATAC for Thymus cells, DN-2030


title: scATAC for Thymus cells, DP-3013


title: scATAC for Thymus cells, DP-3021


title: scATAC for Thymus cells, DP-3025


title: scATAC for Thymus cells, DP-3007


title: scATAC for Thymus cells, DN-2029


title: scATAC for Thymus cells, DN-2032


title: scATAC for Thymus cells, DP-3001


title: scATAC for Thymus cells, DN-2023


title: scATAC for Thymus cells, DN-2016


title: scATAC for Thymus cells, DN-2020


title: scATAC for Thymus cells, DN-2010


title: scATAC for Thymus cells, DN-2026


title: scATAC for Thymus cells, DN-2028


title: scATAC for Thymus cells, DN-2018


title: scATAC for Thymus cells, DN-2013


title: scATAC for Thymus cells, DN-2027


title: scATAC for Thymus cells, DN-2021


title: scATAC for Thymus cells, DN-2025


title: scATAC for Thymus cells, DN-2014


title: scATAC for Thymus cells, DN-2019


title: scATAC for Thymus cells, DN-2024


title: scATAC for Thymus cells, DN-2011


title: scATAC for Thymus cells, DN-2009


title: scATAC for Thymus cells, DN-2017


title: scATAC for Thymus cells, DN-2008


title: scATAC for Thymus cells, DN-2007


title: scATAC for Thymus cells, DN-2005


title: scATAC for Thymus cells, DN-2003


title: scATAC for Thymus cells, DN-2004


title: scATAC for Thymus cells, DN-2012


title: scATAC for Thymus cells, DN-2022


title: scATAC for Thymus cells, DN-2015


title: scATAC for Thymus cells, DN-2001


title: scATAC for Thymus cells, DN-2002


title: scATAC for Thymus cells, DN-4224


title: scATAC for Thymus cells, DN-4223


title: scATAC for Thymus cells, DN-4222


title: scATAC for Thymus cells, DN-4221


title: scATAC for Thymus cells, DN-2006


title: scATAC for Thymus cells, DN-4209


title: scATAC for Thymus cells, DN-4212


title: scATAC for Thymus cells, DN-4217


title: scATAC for Thymus cells, DN-4213


title: scATAC for Thymus cells, DN-4214


title: scATAC for Thymus cells, DN-4215


title: scATAC for Thymus cells, DN-4208


title: scATAC for Thymus cells, DN-4216


title: scATAC for Thymus cells, DN-4220


title: scATAC for Thymus cells, DN-4206


title: scATAC for Thymus cells, DN-4219


title: scATAC for Thymus cells, DN-4211


title: scATAC for Thymus cells, DN-4218


title: scATAC for Thymus cells, DN-4205


title: scATAC for Thymus cells, DN-4204


title: scATAC for Thymus cells, DN-4201


title: scATAC for Thymus cells, DN-4199


title: scATAC for Thymus cells, DN-4197


title: scATAC for Thymus cells, DN-4203


title: scATAC for Thymus cells, DN-4202


title: scATAC for Thymus cells, DN-4200


title: scATAC for Thymus cells, DN-4198


title: scATAC for Thymus cells, DN-4196


title: scATAC for Thymus cells, DN-4195


title: scATAC for Thymus cells, DN-4210


title: scATAC for Thymus cells, DN-4194


title: scATAC for Thymus cells, DN-4193


title: scATAC for Thymus cells, DN-1020


title: scATAC for Thymus cells, DN-4207


title: scATAC for Thymus cells, DN-1032


title: scATAC for Thymus cells, DN-1026


title: scATAC for Thymus cells, DN-1015


title: scATAC for Thymus cells, DN-1008


title: scATAC for Thymus cells, DN-1007


title: scATAC for Thymus cells, DN-1012


title: scATAC for Thymus cells, DN-1016


title: scATAC for Thymus cells, DN-1009


title: scATAC for Thymus cells, DN-1030


title: scATAC for Thymus cells, DN-1021


title: scATAC for Thymus cells, DN-1022


title: scATAC for Thymus cells, DN-1002


title: scATAC for Thymus cells, DN-1005


title: scATAC for Thymus cells, DN-1031


title: scATAC for Thymus cells, DN-1028


title: scATAC for Thymus cells, DN-1006


title: scATAC for Thymus cells, DN-1001


title: scATAC for Thymus cells, DN-1029


title: scATAC for Thymus cells, DN-1023


title: scATAC for Thymus cells, DN-1003


title: scATAC for Thymus cells, DN-1024


title: scATAC for Thymus cells, DN-1010


title: scATAC for Thymus cells, DN-1025


title: scATAC for Thymus cells, DN-1013


title: scATAC for Thymus cells, DN-1018


title: scATAC for Thymus cells, DN-1014


title: scATAC for Thymus cells, DN-1011


title: scATAC for Thymus cells, DN-1027


title: scATAC for Thymus cells, CD8-4187

source_name: CD8+ T cells


title: scATAC for Thymus cells, CD8-4191


title: scATAC for Thymus cells, DN-1004


title: scATAC for Thymus cells, CD8-4192


title: scATAC for Thymus cells, CD8-4188


title: scATAC for Thymus cells, CD8-4190


title: scATAC for Thymus cells, DN-1019


title: scATAC for Thymus cells, CD8-4186


title: scATAC for Thymus cells, CD8-4185


title: scATAC for Thymus cells, CD8-4180


title: scATAC for Thymus cells, CD8-4182


title: scATAC for Thymus cells, CD8-4184


title: scATAC for Thymus cells, CD8-4183


title: scATAC for Thymus cells, CD8-4176


title: scATAC for Thymus cells, CD8-4178


title: scATAC for Thymus cells, CD8-4181


title: scATAC for Thymus cells, CD8-4179


title: scATAC for Thymus cells, CD8-4189


title: scATAC for Thymus cells, CD8-4173


title: scATAC for Thymus cells, CD8-4174


title: scATAC for Thymus cells, CD8-4170


title: scATAC for Thymus cells, CD8-4171


title: scATAC for Thymus cells, CD8-4169


title: scATAC for Thymus cells, CD8-4167


title: scATAC for Thymus cells, CD8-4168


title: scATAC for Thymus cells, CD8-4172


title: scATAC for Thymus cells, CD8-4177


title: scATAC for Thymus cells, CD8-4166


title: scATAC for Thymus cells, CD8-4164


title: scATAC for Thymus cells, CD8-4165


title: scATAC for Thymus cells, CD8-4160


title: scATAC for Thymus cells, CD8-4161


title: scATAC for Thymus cells, CD8-4162


title: scATAC for Thymus cells, CD8-4163


title: scATAC for Thymus cells, CD8-4157


title: scATAC for Thymus cells, CD8-4159


title: scATAC for Thymus cells, CD8-4158


title: scATAC for Thymus cells, CD8-4175


title: scATAC for Thymus cells, CD8-4156


title: scATAC for Thymus cells, CD8-4154


title: scATAC for Thymus cells, CD8-4155


title: scATAC for Thymus cells, CD8-4151


title: scATAC for Thymus cells, CD8-4152


title: scATAC for Thymus cells, CD8-4150


title: scATAC for Thymus cells, CD8-4148


title: scATAC for Thymus cells, CD8-4153


title: scATAC for Thymus cells, CD8-4145


title: scATAC for Thymus cells, CD8-4146


title: scATAC for Thymus cells, CD8-4149


title: scATAC for Thymus cells, CD8-4141


title: scATAC for Thymus cells, CD8-4142


title: scATAC for Thymus cells, CD8-4140


title: scATAC for Thymus cells, CD8-4144


title: scATAC for Thymus cells, CD8-4139


title: scATAC for Thymus cells, CD8-4138


title: scATAC for Thymus cells, CD8-4137


title: scATAC for Thymus cells, CD8-4135


title: scATAC for Thymus cells, CD8-4132


title: scATAC for Thymus cells, CD8-4133


title: scATAC for Thymus cells, CD8-4134


title: scATAC for Thymus cells, CD8-4136


title: scATAC for Thymus cells, CD8-4131


title: scATAC for Thymus cells, CD8-4130


title: scATAC for Thymus cells, CD8-4127


title: scATAC for Thymus cells, CD8-4129


title: scATAC for Thymus cells, CD8-4125


title: scATAC for Thymus cells, CD8-4147


title: scATAC for Thymus cells, CD8-4126


title: scATAC for Thymus cells, CD8-4128


title: scATAC for Thymus cells, CD8-4143


title: scATAC for Thymus cells, CD8-4124


title: scATAC for Thymus cells, CD8-4123


title: scATAC for Thymus cells, CD8-4120


title: scATAC for Thymus cells, CD8-4118


title: scATAC for Thymus cells, CD8-4119


title: scATAC for Thymus cells, CD8-4117


title: scATAC for Thymus cells, CD8-4116


title: scATAC for Thymus cells, CD8-4121


title: scATAC for Thymus cells, CD8-4114


title: scATAC for Thymus cells, CD8-4113


title: scATAC for Thymus cells, CD8-4111


title: scATAC for Thymus cells, CD8-4115


title: scATAC for Thymus cells, CD8-4110


title: scATAC for Thymus cells, CD8-4112


title: scATAC for Thymus cells, CD8-4105


title: scATAC for Thymus cells, CD8-4106


title: scATAC for Thymus cells, CD8-4107


title: scATAC for Thymus cells, CD8-4103


title: scATAC for Thymus cells, CD8-4108


title: scATAC for Thymus cells, CD8-4102


title: scATAC for Thymus cells, CD8-4122


title: scATAC for Thymus cells, CD8-4099


title: scATAC for Thymus cells, CD8-4101


title: scATAC for Thymus cells, CD8-4097


title: scATAC for Thymus cells, CD4-4096

source_name: CD4+ T cells


title: scATAC for Thymus cells, CD4-4095


title: scATAC for Thymus cells, CD4-4094


title: scATAC for Thymus cells, CD4-4092


title: scATAC for Thymus cells, CD4-4088


title: scATAC for Thymus cells, CD4-4091


title: scATAC for Thymus cells, CD4-4089


title: scATAC for Thymus cells, CD4-4090


title: scATAC for Thymus cells, CD4-4093


title: scATAC for Thymus cells, CD4-4087


title: scATAC for Thymus cells, CD4-4086


title: scATAC for Thymus cells, CD8-4109


title: scATAC for Thymus cells, CD4-4084


title: scATAC for Thymus cells, CD4-4085


title: scATAC for Thymus cells, CD8-4104


title: scATAC for Thymus cells, CD4-4082


title: scATAC for Thymus cells, CD4-4081


title: scATAC for Thymus cells, CD4-4080


title: scATAC for Thymus cells, CD4-4078


title: scATAC for Thymus cells, CD4-4079


title: scATAC for Thymus cells, CD4-4077


title: scATAC for Thymus cells, CD8-4100


title: scATAC for Thymus cells, CD8-4098


title: scATAC for Thymus cells, CD4-4075


title: scATAC for Thymus cells, CD4-4073


title: scATAC for Thymus cells, CD4-4072


title: scATAC for Thymus cells, CD4-4071


title: scATAC for Thymus cells, CD4-4074


title: scATAC for Thymus cells, CD4-4070


title: scATAC for Thymus cells, CD4-4069


title: scATAC for Thymus cells, CD4-4067


title: scATAC for Thymus cells, CD4-4066


title: scATAC for Thymus cells, CD4-4068


title: scATAC for Thymus cells, CD4-4065


title: scATAC for Thymus cells, CD4-4062


title: scATAC for Thymus cells, CD4-4061


title: scATAC for Thymus cells, CD4-4083


title: scATAC for Thymus cells, CD4-4060


title: scATAC for Thymus cells, CD4-4058


title: scATAC for Thymus cells, CD4-4059


title: scATAC for Thymus cells, CD4-4076


title: scATAC for Thymus cells, CD4-4057


title: scATAC for Thymus cells, CD4-4056


title: scATAC for Thymus cells, CD4-4054


title: scATAC for Thymus cells, CD4-4051


title: scATAC for Thymus cells, CD4-4050


title: scATAC for Thymus cells, CD4-4053


title: scATAC for Thymus cells, CD4-4049


title: scATAC for Thymus cells, CD4-4048


title: scATAC for Thymus cells, CD4-4064


title: scATAC for Thymus cells, CD4-4045


title: scATAC for Thymus cells, CD4-4063


title: scATAC for Thymus cells, CD4-4042


title: scATAC for Thymus cells, CD4-4043


title: scATAC for Thymus cells, CD4-4046


title: scATAC for Thymus cells, CD4-4044


title: scATAC for Thymus cells, CD4-4041


title: scATAC for Thymus cells, CD4-4038


title: scATAC for Thymus cells, CD4-4037


title: scATAC for Thymus cells, CD4-4036


title: scATAC for Thymus cells, CD4-4039


title: scATAC for Thymus cells, CD4-4033


title: scATAC for Thymus cells, CD4-4055


title: scATAC for Thymus cells, CD4-4052


title: scATAC for Thymus cells, CD4-4034


title: scATAC for Thymus cells, UNK-31316

source_name: Thymocytes


title: scATAC for Thymus cells, UNK-31317


title: scATAC for Thymus cells, UNK-31086


title: scATAC for Thymus cells, CD4-4035


title: scATAC for Thymus cells, UNK-31005


title: scATAC for Thymus cells, UNK-31019


title: scATAC for Thymus cells, UNK-31016


title: scATAC for Thymus cells, UNK-31021


title: scATAC for Thymus cells, UNK-31004


title: scATAC for Thymus cells, UNK-31013


title: scATAC for Thymus cells, CD4-4040


title: scATAC for Thymus cells, CD4-4047


title: scATAC for Thymus cells, T-9-382


title: scATAC for Thymus cells, T-9-384


title: scATAC for Thymus cells, T-9-383


title: scATAC for Thymus cells, T-9-380


title: scATAC for Thymus cells, T-9-378


title: scATAC for Thymus cells, T-9-377


title: scATAC for Thymus cells, T-9-376


title: scATAC for Thymus cells, T-9-379


title: scATAC for Thymus cells, T-9-375


title: scATAC for Thymus cells, T-9-372


title: scATAC for Thymus cells, T-9-374


title: scATAC for Thymus cells, T-9-371


title: scATAC for Thymus cells, T-9-373


title: scATAC for Thymus cells, T-9-368


title: scATAC for Thymus cells, UNK-31020


title: scATAC for Thymus cells, T-9-367


title: scATAC for Thymus cells, T-9-369


title: scATAC for Thymus cells, T-9-370


title: scATAC for Thymus cells, T-9-365


title: scATAC for Thymus cells, T-9-366


title: scATAC for Thymus cells, T-9-364


title: scATAC for Thymus cells, T-9-359


title: scATAC for Thymus cells, T-9-381


title: scATAC for Thymus cells, T-9-361


title: scATAC for Thymus cells, T-9-360


title: scATAC for Thymus cells, T-9-362


title: scATAC for Thymus cells, T-9-357


title: scATAC for Thymus cells, T-9-358


title: scATAC for Thymus cells, T-9-355


title: scATAC for Thymus cells, T-9-353


title: scATAC for Thymus cells, T-8-350


title: scATAC for Thymus cells, T-8-352


title: scATAC for Thymus cells, T-8-351


title: scATAC for Thymus cells, T-9-354


title: scATAC for Thymus cells, T-8-349


title: scATAC for Thymus cells, T-8-347


title: scATAC for Thymus cells, T-8-346


title: scATAC for Thymus cells, T-8-343


title: scATAC for Thymus cells, T-8-344


title: scATAC for Thymus cells, T-8-345


title: scATAC for Thymus cells, T-8-339


title: scATAC for Thymus cells, T-8-340


title: scATAC for Thymus cells, T-8-341


title: scATAC for Thymus cells, T-8-338


title: scATAC for Thymus cells, T-8-337


title: scATAC for Thymus cells, T-8-336


title: scATAC for Thymus cells, T-8-335


title: scATAC for Thymus cells, T-8-334


title: scATAC for Thymus cells, T-8-333


title: scATAC for Thymus cells, T-8-332


title: scATAC for Thymus cells, T-8-330


title: scATAC for Thymus cells, T-8-331


title: scATAC for Thymus cells, T-8-328


title: scATAC for Thymus cells, T-8-329


title: scATAC for Thymus cells, T-8-327


title: scATAC for Thymus cells, T-8-326


title: scATAC for Thymus cells, T-8-348


title: scATAC for Thymus cells, T-8-325


title: scATAC for Thymus cells, T-8-324


title: scATAC for Thymus cells, T-8-323


title: scATAC for Thymus cells, T-8-321


title: scATAC for Thymus cells, T-7-320


title: scATAC for Thymus cells, T-8-342


title: scATAC for Thymus cells, T-7-319


title: scATAC for Thymus cells, T-7-317


title: scATAC for Thymus cells, T-7-315


title: scATAC for Thymus cells, T-7-311


title: scATAC for Thymus cells, T-7-313


title: scATAC for Thymus cells, T-7-310


title: scATAC for Thymus cells, T-7-312


title: scATAC for Thymus cells, T-7-314


title: scATAC for Thymus cells, T-7-306


title: scATAC for Thymus cells, T-7-305


title: scATAC for Thymus cells, T-7-303


title: scATAC for Thymus cells, T-7-302


title: scATAC for Thymus cells, T-7-307


title: scATAC for Thymus cells, T-7-304


title: scATAC for Thymus cells, T-7-308


title: scATAC for Thymus cells, T-7-301


title: scATAC for Thymus cells, T-7-298


title: scATAC for Thymus cells, T-7-297


title: scATAC for Thymus cells, T-7-296


title: scATAC for Thymus cells, T-7-294


title: scATAC for Thymus cells, T-7-318


title: scATAC for Thymus cells, T-7-295


title: scATAC for Thymus cells, T-7-316


title: scATAC for Thymus cells, T-7-293


title: scATAC for Thymus cells, T-7-291


title: scATAC for Thymus cells, T-7-292


title: scATAC for Thymus cells, DN-1017


title: scATAC for Thymus cells, T-7-290


title: scATAC for Thymus cells, T-6-287


title: scATAC for Thymus cells, T-6-288


title: scATAC for Thymus cells, T-6-286


title: scATAC for Thymus cells, T-6-285


title: scATAC for Thymus cells, T-6-283


title: scATAC for Thymus cells, T-6-284


title: scATAC for Thymus cells, T-6-282


title: scATAC for Thymus cells, T-6-280


title: scATAC for Thymus cells, T-6-279


title: scATAC for Thymus cells, T-7-299


title: scATAC for Thymus cells, T-6-277


title: scATAC for Thymus cells, T-6-276


title: scATAC for Thymus cells, T-6-275


title: scATAC for Thymus cells, T-6-273


title: scATAC for Thymus cells, T-6-270


title: scATAC for Thymus cells, T-6-271


title: scATAC for Thymus cells, T-6-274


title: scATAC for Thymus cells, T-6-281


title: scATAC for Thymus cells, T-6-268


title: scATAC for Thymus cells, T-6-264


title: scATAC for Thymus cells, T-6-267


title: scATAC for Thymus cells, T-6-265


title: scATAC for Thymus cells, T-6-266


title: scATAC for Thymus cells, T-6-269


title: scATAC for Thymus cells, T-6-263


title: scATAC for Thymus cells, T-6-261


title: scATAC for Thymus cells, T-6-259


title: scATAC for Thymus cells, T-6-262


title: scATAC for Thymus cells, T-6-260


title: scATAC for Thymus cells, T-5-159


title: scATAC for Thymus cells, T-5-160


title: scATAC for Thymus cells, T-5-158


title: scATAC for Thymus cells, T-6-257


title: scATAC for Thymus cells, T-6-278


title: scATAC for Thymus cells, T-5-157


title: scATAC for Thymus cells, T-6-272


title: scATAC for Thymus cells, T-5-156


title: scATAC for Thymus cells, T-5-154


title: scATAC for Thymus cells, T-5-153


title: scATAC for Thymus cells, T-5-152


title: scATAC for Thymus cells, T-5-151


title: scATAC for Thymus cells, T-5-150


title: scATAC for Thymus cells, T-5-149


title: scATAC for Thymus cells, T-5-148


title: scATAC for Thymus cells, T-5-145


title: scATAC for Thymus cells, T-5-139


title: scATAC for Thymus cells, T-6-258


title: scATAC for Thymus cells, T-5-141


title: scATAC for Thymus cells, T-5-143


title: scATAC for Thymus cells, T-5-138


title: scATAC for Thymus cells, T-5-147


title: scATAC for Thymus cells, T-5-137


title: scATAC for Thymus cells, T-5-135


title: scATAC for Thymus cells, T-5-132


title: scATAC for Thymus cells, T-5-134


title: scATAC for Thymus cells, T-5-131


title: scATAC for Thymus cells, T-5-140


title: scATAC for Thymus cells, T-5-136


title: scATAC for Thymus cells, T-5-130


title: scATAC for Thymus cells, T-5-133


title: scATAC for Thymus cells, T-5-142


title: scATAC for Thymus cells, T-5-129


title: scATAC for Thymus cells, T-4-98


title: scATAC for Thymus cells, T-4-97


title: scATAC for Thymus cells, T-4-128


title: scATAC for Thymus cells, T-4-99


title: scATAC for Thymus cells, T-4-127


title: scATAC for Thymus cells, T-4-126


title: scATAC for Thymus cells, T-4-125


title: scATAC for Thymus cells, T-4-123


title: scATAC for Thymus cells, T-4-124


title: scATAC for Thymus cells, T-5-144


title: scATAC for Thymus cells, T-5-146


title: scATAC for Thymus cells, T-4-122


title: scATAC for Thymus cells, T-4-120


title: scATAC for Thymus cells, T-4-121


title: scATAC for Thymus cells, T-4-118


title: scATAC for Thymus cells, T-4-117


title: scATAC for Thymus cells, T-4-119


title: scATAC for Thymus cells, T-4-113


title: scATAC for Thymus cells, T-4-114


title: scATAC for Thymus cells, T-4-116


title: scATAC for Thymus cells, T-4-112


title: scATAC for Thymus cells, T-4-110


title: scATAC for Thymus cells, T-4-111


title: scATAC for Thymus cells, T-4-106


title: scATAC for Thymus cells, T-4-109


title: scATAC for Thymus cells, T-4-104


title: scATAC for Thymus cells, T-4-108


title: scATAC for Thymus cells, T-4-105


title: scATAC for Thymus cells, T-4-102


title: scATAC for Thymus cells, T-4-103


title: scATAC for Thymus cells, T-4-107


title: scATAC for Thymus cells, T-4-101


title: scATAC for Thymus cells, T-36-1149


title: scATAC for Thymus cells, T-36-1151


title: scATAC for Thymus cells, T-36-1152


title: scATAC for Thymus cells, T-4-100


title: scATAC for Thymus cells, T-36-1146


title: scATAC for Thymus cells, T-36-1148


title: scATAC for Thymus cells, T-36-1144


title: scATAC for Thymus cells, T-4-115


title: scATAC for Thymus cells, T-36-1142


title: scATAC for Thymus cells, T-36-1150


title: scATAC for Thymus cells, T-36-1143


title: scATAC for Thymus cells, T-36-1140


title: scATAC for Thymus cells, T-36-1145


title: scATAC for Thymus cells, T-36-1139


title: scATAC for Thymus cells, T-36-1137


title: scATAC for Thymus cells, T-36-1141


title: scATAC for Thymus cells, T-36-1138


title: scATAC for Thymus cells, T-36-1136


title: scATAC for Thymus cells, T-36-1134


title: scATAC for Thymus cells, T-36-1130


title: scATAC for Thymus cells, T-36-1127


title: scATAC for Thymus cells, T-36-1126


title: scATAC for Thymus cells, T-36-1125


title: scATAC for Thymus cells, T-36-1124


title: scATAC for Thymus cells, T-36-1122


title: scATAC for Thymus cells, T-35-927


title: scATAC for Thymus cells, T-35-923


title: scATAC for Thymus cells, T-36-1121


title: scATAC for Thymus cells, T-36-1132


title: scATAC for Thymus cells, T-36-1129


title: scATAC for Thymus cells, T-36-1128


title: scATAC for Thymus cells, T-35-928


title: scATAC for Thymus cells, T-35-922


title: scATAC for Thymus cells, T-35-920


title: scATAC for Thymus cells, T-35-919


title: scATAC for Thymus cells, T-35-916


title: scATAC for Thymus cells, T-35-917


title: scATAC for Thymus cells, T-35-915


title: scATAC for Thymus cells, T-35-914


title: scATAC for Thymus cells, T-36-1135


title: scATAC for Thymus cells, T-36-1133


title: scATAC for Thymus cells, T-35-912


title: scATAC for Thymus cells, T-35-910


title: scATAC for Thymus cells, T-35-908


title: scATAC for Thymus cells, T-35-913


title: scATAC for Thymus cells, T-35-907


title: scATAC for Thymus cells, T-36-1131


title: scATAC for Thymus cells, T-8-322


title: scATAC for Thymus cells, T-35-905


title: scATAC for Thymus cells, T-35-902


title: scATAC for Thymus cells, T-34-894


title: scATAC for Thymus cells, T-34-890


title: scATAC for Thymus cells, T-35-899


title: scATAC for Thymus cells, T-34-886


title: scATAC for Thymus cells, T-35-897


title: scATAC for Thymus cells, T-35-901


title: scATAC for Thymus cells, T-34-888


title: scATAC for Thymus cells, T-34-887


title: scATAC for Thymus cells, T-34-896


title: scATAC for Thymus cells, T-34-895


title: scATAC for Thymus cells, T-35-903


title: scATAC for Thymus cells, T-35-900


title: scATAC for Thymus cells, T-34-882


title: scATAC for Thymus cells, T-34-885


title: scATAC for Thymus cells, T-34-883


title: scATAC for Thymus cells, T-34-884


title: scATAC for Thymus cells, T-34-881


title: scATAC for Thymus cells, T-34-880


title: scATAC for Thymus cells, T-34-879


title: scATAC for Thymus cells, T-35-906


title: scATAC for Thymus cells, T-34-876


title: scATAC for Thymus cells, T-34-877


title: scATAC for Thymus cells, T-34-889


title: scATAC for Thymus cells, T-34-891


title: scATAC for Thymus cells, T-34-893


title: scATAC for Thymus cells, T-34-892


title: scATAC for Thymus cells, T-34-875


title: scATAC for Thymus cells, T-34-874


title: scATAC for Thymus cells, T-34-878


title: scATAC for Thymus cells, T-34-871


title: scATAC for Thymus cells, T-34-867


title: scATAC for Thymus cells, T-34-869


title: scATAC for Thymus cells, T-33-863


title: scATAC for Thymus cells, T-34-873


title: scATAC for Thymus cells, T-33-862


title: scATAC for Thymus cells, T-34-868


title: scATAC for Thymus cells, T-33-855


title: scATAC for Thymus cells, T-33-853


title: scATAC for Thymus cells, T-33-856


title: scATAC for Thymus cells, T-33-861


title: scATAC for Thymus cells, T-33-858


title: scATAC for Thymus cells, T-33-857


title: scATAC for Thymus cells, T-33-851


title: scATAC for Thymus cells, T-34-870


title: scATAC for Thymus cells, T-33-849


title: scATAC for Thymus cells, T-34-872


title: scATAC for Thymus cells, T-33-850


title: scATAC for Thymus cells, T-33-848


title: scATAC for Thymus cells, T-33-847


title: scATAC for Thymus cells, T-33-846


title: scATAC for Thymus cells, T-33-845


title: scATAC for Thymus cells, T-34-866


title: scATAC for Thymus cells, T-33-844


title: scATAC for Thymus cells, T-34-865


title: scATAC for Thymus cells, T-33-859


title: scATAC for Thymus cells, T-33-852


title: scATAC for Thymus cells, T-33-854


title: scATAC for Thymus cells, T-33-842


title: scATAC for Thymus cells, T-33-841


title: scATAC for Thymus cells, T-33-843


title: scATAC for Thymus cells, T-33-840


title: scATAC for Thymus cells, T-33-838


title: scATAC for Thymus cells, T-33-835


title: scATAC for Thymus cells, T-32-1120


title: scATAC for Thymus cells, T-33-833


title: scATAC for Thymus cells, T-32-1119


title: scATAC for Thymus cells, T-32-1116


title: scATAC for Thymus cells, T-33-836


title: scATAC for Thymus cells, T-32-1111


title: scATAC for Thymus cells, T-32-1115


title: scATAC for Thymus cells, T-32-1112


title: scATAC for Thymus cells, T-32-1109


title: scATAC for Thymus cells, T-32-1110


title: scATAC for Thymus cells, T-32-1106


title: scATAC for Thymus cells, T-32-1103


title: scATAC for Thymus cells, T-33-839


title: scATAC for Thymus cells, T-32-1105


title: scATAC for Thymus cells, T-32-1104


title: scATAC for Thymus cells, T-33-837


title: scATAC for Thymus cells, T-32-1101


title: scATAC for Thymus cells, T-32-1098


title: scATAC for Thymus cells, T-32-1096


title: scATAC for Thymus cells, T-32-1102


title: scATAC for Thymus cells, T-32-1097


title: scATAC for Thymus cells, T-32-1100


title: scATAC for Thymus cells, T-32-1095


title: scATAC for Thymus cells, T-32-1099


title: scATAC for Thymus cells, T-32-1094


title: scATAC for Thymus cells, T-32-1092


title: scATAC for Thymus cells, T-32-1091


title: scATAC for Thymus cells, T-32-1093


title: scATAC for Thymus cells, T-32-1113


title: scATAC for Thymus cells, T-32-1089


title: scATAC for Thymus cells, T-31-829


title: scATAC for Thymus cells, T-33-834


title: scATAC for Thymus cells, T-31-828


title: scATAC for Thymus cells, T-31-827


title: scATAC for Thymus cells, T-31-831


title: scATAC for Thymus cells, T-32-1118


title: scATAC for Thymus cells, T-31-826


title: scATAC for Thymus cells, T-31-825


title: scATAC for Thymus cells, T-31-824


title: scATAC for Thymus cells, T-32-1114


title: scATAC for Thymus cells, T-31-823


title: scATAC for Thymus cells, T-31-821


title: scATAC for Thymus cells, T-31-820


title: scATAC for Thymus cells, T-31-822


title: scATAC for Thymus cells, T-31-819


title: scATAC for Thymus cells, T-31-817


title: scATAC for Thymus cells, T-31-818


title: scATAC for Thymus cells, T-31-816


title: scATAC for Thymus cells, T-31-815


title: scATAC for Thymus cells, T-31-812


title: scATAC for Thymus cells, T-31-813


title: scATAC for Thymus cells, T-31-810


title: scATAC for Thymus cells, T-31-832


title: scATAC for Thymus cells, T-31-814


title: scATAC for Thymus cells, T-31-809


title: scATAC for Thymus cells, T-31-808


title: scATAC for Thymus cells, T-31-805


title: scATAC for Thymus cells, T-31-803


title: scATAC for Thymus cells, T-31-804


title: scATAC for Thymus cells, T-31-807


title: scATAC for Thymus cells, T-31-802


title: scATAC for Thymus cells, T-31-806


title: scATAC for Thymus cells, T-31-801


title: scATAC for Thymus cells, T-30-796


title: scATAC for Thymus cells, T-30-798


title: scATAC for Thymus cells, T-30-799


title: scATAC for Thymus cells, T-30-797


title: scATAC for Thymus cells, T-30-800


title: scATAC for Thymus cells, T-30-794


title: scATAC for Thymus cells, T-30-795


title: scATAC for Thymus cells, T-30-789


title: scATAC for Thymus cells, T-30-790


title: scATAC for Thymus cells, T-31-811


title: scATAC for Thymus cells, T-30-793


title: scATAC for Thymus cells, T-30-788


title: scATAC for Thymus cells, T-30-792


title: scATAC for Thymus cells, T-30-787


title: scATAC for Thymus cells, T-30-786


title: scATAC for Thymus cells, T-30-785


title: scATAC for Thymus cells, T-30-783


title: scATAC for Thymus cells, T-30-784


title: scATAC for Thymus cells, T-30-782


title: scATAC for Thymus cells, T-30-781


title: scATAC for Thymus cells, T-30-780


title: scATAC for Thymus cells, T-32-1107


title: scATAC for Thymus cells, T-30-777


title: scATAC for Thymus cells, T-30-772


title: scATAC for Thymus cells, T-30-770


title: scATAC for Thymus cells, T-30-771


title: scATAC for Thymus cells, T-3-96


title: scATAC for Thymus cells, T-30-779


title: scATAC for Thymus cells, T-3-93


title: scATAC for Thymus cells, T-3-94


title: scATAC for Thymus cells, T-3-95


title: scATAC for Thymus cells, T-30-774


title: scATAC for Thymus cells, T-30-775


title: scATAC for Thymus cells, T-30-773


title: scATAC for Thymus cells, T-3-90


title: scATAC for Thymus cells, T-3-91


title: scATAC for Thymus cells, T-3-89


title: scATAC for Thymus cells, T-30-769


title: scATAC for Thymus cells, T-30-791


title: scATAC for Thymus cells, T-3-92


title: scATAC for Thymus cells, T-3-86


title: scATAC for Thymus cells, T-3-84


title: scATAC for Thymus cells, T-30-776


title: scATAC for Thymus cells, T-3-83


title: scATAC for Thymus cells, T-3-82


title: scATAC for Thymus cells, T-3-88


title: scATAC for Thymus cells, T-3-87


title: scATAC for Thymus cells, T-3-81


title: scATAC for Thymus cells, T-3-79


title: scATAC for Thymus cells, T-3-78


title: scATAC for Thymus cells, T-3-85


title: scATAC for Thymus cells, T-3-70


title: scATAC for Thymus cells, T-3-76


title: scATAC for Thymus cells, T-3-77


title: scATAC for Thymus cells, T-3-73


title: scATAC for Thymus cells, T-3-74


title: scATAC for Thymus cells, T-3-75


title: scATAC for Thymus cells, T-3-71


title: scATAC for Thymus cells, T-3-80


title: scATAC for Thymus cells, T-3-66


title: scATAC for Thymus cells, T-3-65


title: scATAC for Thymus cells, T-3-67


title: scATAC for Thymus cells, T-3-68


title: scATAC for Thymus cells, T-29-764


title: scATAC for Thymus cells, T-29-768


title: scATAC for Thymus cells, T-29-760


title: scATAC for Thymus cells, T-29-759


title: scATAC for Thymus cells, T-29-767


title: scATAC for Thymus cells, T-29-762


title: scATAC for Thymus cells, T-29-766


title: scATAC for Thymus cells, T-29-761


title: scATAC for Thymus cells, T-3-72


title: scATAC for Thymus cells, T-29-756


title: scATAC for Thymus cells, T-29-753


title: scATAC for Thymus cells, T-29-755


title: scATAC for Thymus cells, T-29-765


title: scATAC for Thymus cells, T-29-750


title: scATAC for Thymus cells, T-29-752


title: scATAC for Thymus cells, T-3-69


title: scATAC for Thymus cells, T-29-746


title: scATAC for Thymus cells, T-29-748


title: scATAC for Thymus cells, T-29-754


title: scATAC for Thymus cells, T-29-751


title: scATAC for Thymus cells, T-29-749


title: scATAC for Thymus cells, T-29-757


title: scATAC for Thymus cells, T-29-745


title: scATAC for Thymus cells, T-29-744


title: scATAC for Thymus cells, T-29-743


title: scATAC for Thymus cells, T-29-740


title: scATAC for Thymus cells, T-29-737


title: scATAC for Thymus cells, T-28-1087


title: scATAC for Thymus cells, T-29-739


title: scATAC for Thymus cells, T-28-1088


title: scATAC for Thymus cells, T-28-1085


title: scATAC for Thymus cells, T-28-1084


title: scATAC for Thymus cells, T-28-1083


title: scATAC for Thymus cells, T-28-1086


title: scATAC for Thymus cells, T-28-1081


title: scATAC for Thymus cells, T-28-1076


title: scATAC for Thymus cells, T-28-1072


title: scATAC for Thymus cells, T-28-1070


title: scATAC for Thymus cells, T-28-1069


title: scATAC for Thymus cells, T-28-1080


title: scATAC for Thymus cells, T-28-1067


title: scATAC for Thymus cells, T-28-1074


title: scATAC for Thymus cells, T-28-1079


title: scATAC for Thymus cells, T-28-1075


title: scATAC for Thymus cells, T-28-1065


title: scATAC for Thymus cells, T-28-1071


title: scATAC for Thymus cells, T-28-1063


title: scATAC for Thymus cells, T-28-1068


title: scATAC for Thymus cells, T-28-1062


title: scATAC for Thymus cells, T-28-1077


title: scATAC for Thymus cells, T-28-1082


title: scATAC for Thymus cells, T-28-1057


title: scATAC for Thymus cells, T-27-736


title: scATAC for Thymus cells, T-27-735


title: scATAC for Thymus cells, T-28-1064


title: scATAC for Thymus cells, T-28-1078


title: scATAC for Thymus cells, T-28-1061


title: scATAC for Thymus cells, T-28-1060


title: scATAC for Thymus cells, T-28-1059


title: scATAC for Thymus cells, T-28-1058


title: scATAC for Thymus cells, T-31-830


title: scATAC for Thymus cells, T-27-734


title: scATAC for Thymus cells, T-27-732


title: scATAC for Thymus cells, T-27-726


title: scATAC for Thymus cells, T-27-728


title: scATAC for Thymus cells, T-28-1066


title: scATAC for Thymus cells, T-27-717


title: scATAC for Thymus cells, T-27-719


title: scATAC for Thymus cells, T-27-721


title: scATAC for Thymus cells, T-27-731


title: scATAC for Thymus cells, T-27-730


title: scATAC for Thymus cells, T-27-725


title: scATAC for Thymus cells, T-27-715


title: scATAC for Thymus cells, T-27-729


title: scATAC for Thymus cells, T-27-722


title: scATAC for Thymus cells, T-27-724


title: scATAC for Thymus cells, T-27-723


title: scATAC for Thymus cells, T-27-718


title: scATAC for Thymus cells, T-27-709


title: scATAC for Thymus cells, T-27-720


title: scATAC for Thymus cells, T-27-708


title: scATAC for Thymus cells, T-26-702


title: scATAC for Thymus cells, T-26-703


title: scATAC for Thymus cells, T-27-713


title: scATAC for Thymus cells, T-26-701


title: scATAC for Thymus cells, T-27-706


title: scATAC for Thymus cells, T-27-716


title: scATAC for Thymus cells, T-27-712


title: scATAC for Thymus cells, T-26-700


title: scATAC for Thymus cells, T-27-710


title: scATAC for Thymus cells, T-27-727


title: scATAC for Thymus cells, T-27-707


title: scATAC for Thymus cells, T-27-705


title: scATAC for Thymus cells, T-26-699


title: scATAC for Thymus cells, T-26-697


title: scATAC for Thymus cells, T-26-698


title: scATAC for Thymus cells, T-26-696


title: scATAC for Thymus cells, T-26-694


title: scATAC for Thymus cells, T-27-711


title: scATAC for Thymus cells, T-26-693


title: scATAC for Thymus cells, T-26-692


title: scATAC for Thymus cells, T-26-691


title: scATAC for Thymus cells, T-26-688


title: scATAC for Thymus cells, T-26-687


title: scATAC for Thymus cells, T-26-686


title: scATAC for Thymus cells, T-26-684


title: scATAC for Thymus cells, T-26-689


title: scATAC for Thymus cells, T-26-681


title: scATAC for Thymus cells, T-26-683


title: scATAC for Thymus cells, T-26-682


title: scATAC for Thymus cells, T-26-678


title: scATAC for Thymus cells, T-26-679


title: scATAC for Thymus cells, T-26-676


title: scATAC for Thymus cells, T-26-674


title: scATAC for Thymus cells, T-26-673


title: scATAC for Thymus cells, T-25-1056


title: scATAC for Thymus cells, T-25-1055


title: scATAC for Thymus cells, T-26-675


title: scATAC for Thymus cells, T-25-1054


title: scATAC for Thymus cells, T-25-1053


title: scATAC for Thymus cells, T-25-1052


title: scATAC for Thymus cells, T-25-1050


title: scATAC for Thymus cells, T-25-1049


title: scATAC for Thymus cells, T-25-1047


title: scATAC for Thymus cells, T-25-1046


title: scATAC for Thymus cells, T-25-1048


title: scATAC for Thymus cells, T-25-1045


title: scATAC for Thymus cells, T-25-1044


title: scATAC for Thymus cells, T-25-1040


title: scATAC for Thymus cells, T-25-1043


title: scATAC for Thymus cells, T-25-1042


title: scATAC for Thymus cells, T-26-677


title: scATAC for Thymus cells, T-25-1041


title: scATAC for Thymus cells, T-25-1038


title: scATAC for Thymus cells, T-26-680


title: scATAC for Thymus cells, T-25-1035


title: scATAC for Thymus cells, T-25-1039


title: scATAC for Thymus cells, T-25-1036


title: scATAC for Thymus cells, T-25-1037


title: scATAC for Thymus cells, T-25-1033


title: scATAC for Thymus cells, T-25-1034


title: scATAC for Thymus cells, T-25-1031


title: scATAC for Thymus cells, T-25-1029


title: scATAC for Thymus cells, T-25-1051


title: scATAC for Thymus cells, T-25-1028


title: scATAC for Thymus cells, T-25-1027


title: scATAC for Thymus cells, T-24-672


title: scATAC for Thymus cells, T-24-670


title: scATAC for Thymus cells, T-24-668


title: scATAC for Thymus cells, T-24-666


title: scATAC for Thymus cells, T-24-664


title: scATAC for Thymus cells, T-24-669


title: scATAC for Thymus cells, T-24-665


title: scATAC for Thymus cells, T-24-660


title: scATAC for Thymus cells, T-24-663


title: scATAC for Thymus cells, T-24-658


title: scATAC for Thymus cells, T-24-659


title: scATAC for Thymus cells, T-24-654


title: scATAC for Thymus cells, T-24-656


title: scATAC for Thymus cells, T-24-655


title: scATAC for Thymus cells, T-24-653


title: scATAC for Thymus cells, T-25-1030


title: scATAC for Thymus cells, T-24-667


title: scATAC for Thymus cells, T-24-652


title: scATAC for Thymus cells, T-24-651


title: scATAC for Thymus cells, T-25-1026


title: scATAC for Thymus cells, T-24-648


title: scATAC for Thymus cells, T-24-646


title: scATAC for Thymus cells, T-24-657


title: scATAC for Thymus cells, T-24-650


title: scATAC for Thymus cells, T-24-647


title: scATAC for Thymus cells, T-24-671


title: scATAC for Thymus cells, T-24-644


title: scATAC for Thymus cells, T-24-645


title: scATAC for Thymus cells, T-24-643


title: scATAC for Thymus cells, T-24-661


title: scATAC for Thymus cells, T-23-997


title: scATAC for Thymus cells, T-23-999


title: scATAC for Thymus cells, T-24-641


title: scATAC for Thymus cells, T-24-662


title: scATAC for Thymus cells, T-23-994


title: scATAC for Thymus cells, T-23-995


title: scATAC for Thymus cells, T-24-649


title: scATAC for Thymus cells, T-23-1021


title: scATAC for Thymus cells, T-23-1022


title: scATAC for Thymus cells, T-23-993


title: scATAC for Thymus cells, T-23-1023


title: scATAC for Thymus cells, T-23-1024


title: scATAC for Thymus cells, T-23-1019


title: scATAC for Thymus cells, T-23-1020


title: scATAC for Thymus cells, T-23-1017


title: scATAC for Thymus cells, T-23-1016


title: scATAC for Thymus cells, T-23-1018


title: scATAC for Thymus cells, T-23-1014


title: scATAC for Thymus cells, T-23-1015


title: scATAC for Thymus cells, T-23-1009


title: scATAC for Thymus cells, T-23-1011


title: scATAC for Thymus cells, T-23-1010


title: scATAC for Thymus cells, T-23-1008


title: scATAC for Thymus cells, T-23-1013


title: scATAC for Thymus cells, T-23-1012


title: scATAC for Thymus cells, T-24-642


title: scATAC for Thymus cells, T-23-1006


title: scATAC for Thymus cells, T-23-1005


title: scATAC for Thymus cells, T-23-1003


title: scATAC for Thymus cells, T-23-1004


title: scATAC for Thymus cells, T-23-996


title: scATAC for Thymus cells, T-23-1001


title: scATAC for Thymus cells, T-23-1002


title: scATAC for Thymus cells, T-22-640


title: scATAC for Thymus cells, T-22-639


title: scATAC for Thymus cells, T-22-632


title: scATAC for Thymus cells, T-22-636


title: scATAC for Thymus cells, T-22-634


title: scATAC for Thymus cells, T-22-633


title: scATAC for Thymus cells, T-22-637


title: scATAC for Thymus cells, T-23-1007


title: scATAC for Thymus cells, T-22-635


title: scATAC for Thymus cells, T-22-630


title: scATAC for Thymus cells, T-22-625


title: scATAC for Thymus cells, T-22-626


title: scATAC for Thymus cells, T-22-628


title: scATAC for Thymus cells, T-22-624


title: scATAC for Thymus cells, T-22-622


title: scATAC for Thymus cells, T-22-623


title: scATAC for Thymus cells, T-22-621


title: scATAC for Thymus cells, T-22-618


title: scATAC for Thymus cells, T-22-620


title: scATAC for Thymus cells, T-22-619


title: scATAC for Thymus cells, T-22-617


title: scATAC for Thymus cells, T-22-613


title: scATAC for Thymus cells, T-22-616


title: scATAC for Thymus cells, T-22-610


title: scATAC for Thymus cells, T-22-615


title: scATAC for Thymus cells, T-22-611


title: scATAC for Thymus cells, T-23-1000


title: scATAC for Thymus cells, T-22-609


title: scATAC for Thymus cells, T-22-629


title: scATAC for Thymus cells, T-21-992


title: scATAC for Thymus cells, T-21-991


title: scATAC for Thymus cells, T-21-990


title: scATAC for Thymus cells, T-21-988


title: scATAC for Thymus cells, T-21-989


title: scATAC for Thymus cells, T-21-985


title: scATAC for Thymus cells, T-21-987


title: scATAC for Thymus cells, T-21-984


title: scATAC for Thymus cells, T-21-986


title: scATAC for Thymus cells, T-21-980


title: scATAC for Thymus cells, T-21-983


title: scATAC for Thymus cells, T-21-979


title: scATAC for Thymus cells, T-21-978


title: scATAC for Thymus cells, T-21-982


title: scATAC for Thymus cells, T-21-981


title: scATAC for Thymus cells, T-21-975


title: scATAC for Thymus cells, T-21-977


title: scATAC for Thymus cells, T-21-969


title: scATAC for Thymus cells, T-21-972


title: scATAC for Thymus cells, T-21-974


title: scATAC for Thymus cells, T-21-968


title: scATAC for Thymus cells, T-21-973


title: scATAC for Thymus cells, T-21-970


title: scATAC for Thymus cells, T-21-966


title: scATAC for Thymus cells, T-21-965


title: scATAC for Thymus cells, T-22-631


title: scATAC for Thymus cells, T-21-962


title: scATAC for Thymus cells, T-21-963


title: scATAC for Thymus cells, T-22-627


title: scATAC for Thymus cells, T-21-961


title: scATAC for Thymus cells, T-21-964


title: scATAC for Thymus cells, T-20-606


title: scATAC for Thymus cells, T-20-605


title: scATAC for Thymus cells, T-20-608


title: scATAC for Thymus cells, T-21-976


title: scATAC for Thymus cells, T-20-607


title: scATAC for Thymus cells, T-20-599


title: scATAC for Thymus cells, T-20-597


title: scATAC for Thymus cells, T-20-603


title: scATAC for Thymus cells, T-20-602


title: scATAC for Thymus cells, T-20-600


title: scATAC for Thymus cells, T-20-604


title: scATAC for Thymus cells, T-20-596


title: scATAC for Thymus cells, T-20-598


title: scATAC for Thymus cells, T-20-592


title: scATAC for Thymus cells, T-20-595


title: scATAC for Thymus cells, T-20-591


title: scATAC for Thymus cells, T-20-589


title: scATAC for Thymus cells, T-20-587


title: scATAC for Thymus cells, T-20-586


title: scATAC for Thymus cells, T-20-585


title: scATAC for Thymus cells, T-20-584


title: scATAC for Thymus cells, T-20-582


title: scATAC for Thymus cells, T-20-601


title: scATAC for Thymus cells, T-20-583


title: scATAC for Thymus cells, T-20-581


title: scATAC for Thymus cells, T-20-579


title: scATAC for Thymus cells, T-20-594


title: scATAC for Thymus cells, T-2-63


title: scATAC for Thymus cells, T-20-578


title: scATAC for Thymus cells, T-20-577


title: scATAC for Thymus cells, T-2-59


title: scATAC for Thymus cells, T-2-62


title: scATAC for Thymus cells, T-2-61


title: scATAC for Thymus cells, T-2-60


title: scATAC for Thymus cells, T-20-588


title: scATAC for Thymus cells, T-2-64


title: scATAC for Thymus cells, T-2-58


title: scATAC for Thymus cells, T-20-590


title: scATAC for Thymus cells, T-2-53


title: scATAC for Thymus cells, T-2-55


title: scATAC for Thymus cells, T-2-56


title: scATAC for Thymus cells, T-2-51


title: scATAC for Thymus cells, T-2-48


title: scATAC for Thymus cells, T-2-50


title: scATAC for Thymus cells, T-2-49


title: scATAC for Thymus cells, T-2-54


title: scATAC for Thymus cells, T-2-57


title: scATAC for Thymus cells, T-2-46


title: scATAC for Thymus cells, T-20-580


title: scATAC for Thymus cells, T-2-52


title: scATAC for Thymus cells, T-2-44


title: scATAC for Thymus cells, T-2-45


title: scATAC for Thymus cells, T-2-42


title: scATAC for Thymus cells, T-2-40


title: scATAC for Thymus cells, T-2-36


title: scATAC for Thymus cells, T-2-39


title: scATAC for Thymus cells, T-2-37


title: scATAC for Thymus cells, T-2-34


title: scATAC for Thymus cells, T-2-35


title: scATAC for Thymus cells, T-19-575


title: scATAC for Thymus cells, T-19-576


title: scATAC for Thymus cells, T-19-573


title: scATAC for Thymus cells, T-19-574


title: scATAC for Thymus cells, T-19-572


title: scATAC for Thymus cells, T-19-566


title: scATAC for Thymus cells, T-19-567


title: scATAC for Thymus cells, T-19-564


title: scATAC for Thymus cells, T-19-565


title: scATAC for Thymus cells, T-19-571


title: scATAC for Thymus cells, T-19-563


title: scATAC for Thymus cells, T-19-568


title: scATAC for Thymus cells, T-19-569


title: scATAC for Thymus cells, T-19-560


title: scATAC for Thymus cells, T-2-41


title: scATAC for Thymus cells, T-19-562


title: scATAC for Thymus cells, T-19-561


title: scATAC for Thymus cells, T-19-558


title: scATAC for Thymus cells, T-19-559


title: scATAC for Thymus cells, T-2-38


title: scATAC for Thymus cells, T-19-557


title: scATAC for Thymus cells, T-2-1


title: scATAC for Thymus cells, T-19-553


title: scATAC for Thymus cells, T-19-554


title: scATAC for Thymus cells, T-19-556


title: scATAC for Thymus cells, T-19-551


title: scATAC for Thymus cells, T-19-549


title: scATAC for Thymus cells, T-19-570


title: scATAC for Thymus cells, T-19-548


title: scATAC for Thymus cells, T-19-550


title: scATAC for Thymus cells, T-19-552


title: scATAC for Thymus cells, T-20-593


title: scATAC for Thymus cells, T-19-545


title: scATAC for Thymus cells, T-18-957


title: scATAC for Thymus cells, T-18-958


title: scATAC for Thymus cells, T-18-956


title: scATAC for Thymus cells, T-18-955


title: scATAC for Thymus cells, T-18-954


title: scATAC for Thymus cells, T-18-960


title: scATAC for Thymus cells, T-18-952


title: scATAC for Thymus cells, T-18-951


title: scATAC for Thymus cells, T-18-949


title: scATAC for Thymus cells, T-19-547


title: scATAC for Thymus cells, T-18-947


title: scATAC for Thymus cells, T-18-950


title: scATAC for Thymus cells, T-18-946


title: scATAC for Thymus cells, T-18-953


title: scATAC for Thymus cells, T-18-942


title: scATAC for Thymus cells, T-18-943


title: scATAC for Thymus cells, T-18-948


title: scATAC for Thymus cells, T-18-945


title: scATAC for Thymus cells, T-18-944


title: scATAC for Thymus cells, T-18-940


title: scATAC for Thymus cells, T-19-546


title: scATAC for Thymus cells, T-18-939


title: scATAC for Thymus cells, T-18-938


title: scATAC for Thymus cells, T-18-937


title: scATAC for Thymus cells, T-18-959


title: scATAC for Thymus cells, T-18-936


title: scATAC for Thymus cells, T-18-935


title: scATAC for Thymus cells, T-2-43


title: scATAC for Thymus cells, T-18-933


title: scATAC for Thymus cells, T-18-932


title: scATAC for Thymus cells, T-18-931


title: scATAC for Thymus cells, T-18-929


title: scATAC for Thymus cells, T-17-544


title: scATAC for Thymus cells, T-18-930


title: scATAC for Thymus cells, T-18-941


title: scATAC for Thymus cells, T-17-542


title: scATAC for Thymus cells, T-18-934


title: scATAC for Thymus cells, T-17-540


title: scATAC for Thymus cells, T-17-539


title: scATAC for Thymus cells, T-17-536


title: scATAC for Thymus cells, T-17-537


title: scATAC for Thymus cells, T-17-538


title: scATAC for Thymus cells, T-17-534


title: scATAC for Thymus cells, T-17-535


title: scATAC for Thymus cells, T-17-532


title: scATAC for Thymus cells, T-17-543


title: scATAC for Thymus cells, T-17-531


title: scATAC for Thymus cells, T-17-533


title: scATAC for Thymus cells, T-17-527


title: scATAC for Thymus cells, T-17-530


title: scATAC for Thymus cells, T-17-525


title: scATAC for Thymus cells, T-17-526


title: scATAC for Thymus cells, T-17-524


title: scATAC for Thymus cells, T-17-523


title: scATAC for Thymus cells, T-17-529


title: scATAC for Thymus cells, T-17-528


title: scATAC for Thymus cells, T-17-522


title: scATAC for Thymus cells, T-17-521


title: scATAC for Thymus cells, T-17-519


title: scATAC for Thymus cells, T-17-520


title: scATAC for Thymus cells, T-17-515


title: scATAC for Thymus cells, T-17-516


title: scATAC for Thymus cells, T-17-518


title: scATAC for Thymus cells, T-17-517


title: scATAC for Thymus cells, T-17-514


title: scATAC for Thymus cells, T-17-513


title: scATAC for Thymus cells, T-16-253


title: scATAC for Thymus cells, T-16-252


title: scATAC for Thymus cells, T-16-249


title: scATAC for Thymus cells, T-16-255


title: scATAC for Thymus cells, T-16-248


title: scATAC for Thymus cells, T-16-247


title: scATAC for Thymus cells, T-16-244


title: scATAC for Thymus cells, T-16-250


title: scATAC for Thymus cells, T-16-254


title: scATAC for Thymus cells, T-16-256


title: scATAC for Thymus cells, T-16-243


title: scATAC for Thymus cells, T-16-241


title: scATAC for Thymus cells, T-16-234


title: scATAC for Thymus cells, T-16-235


title: scATAC for Thymus cells, T-16-233


title: scATAC for Thymus cells, T-16-236


title: scATAC for Thymus cells, T-16-237


title: scATAC for Thymus cells, T-16-238


title: scATAC for Thymus cells, T-16-231


title: scATAC for Thymus cells, T-16-232


title: scATAC for Thymus cells, T-16-230


title: scATAC for Thymus cells, T-16-242


title: scATAC for Thymus cells, T-16-225


title: scATAC for Thymus cells, T-16-227


title: scATAC for Thymus cells, T-15-509


title: scATAC for Thymus cells, T-15-512


title: scATAC for Thymus cells, T-15-511


title: scATAC for Thymus cells, T-15-510


title: scATAC for Thymus cells, T-16-226


title: scATAC for Thymus cells, T-15-508


title: scATAC for Thymus cells, T-15-507


title: scATAC for Thymus cells, T-15-503


title: scATAC for Thymus cells, T-16-240


title: scATAC for Thymus cells, T-15-505


title: scATAC for Thymus cells, T-15-504


title: scATAC for Thymus cells, T-15-502


title: scATAC for Thymus cells, T-15-499


title: scATAC for Thymus cells, T-15-500


title: scATAC for Thymus cells, T-15-497


title: scATAC for Thymus cells, T-15-493


title: scATAC for Thymus cells, T-16-228


title: scATAC for Thymus cells, T-15-494


title: scATAC for Thymus cells, T-15-492


title: scATAC for Thymus cells, T-15-501


title: scATAC for Thymus cells, T-15-495


title: scATAC for Thymus cells, T-15-491


title: scATAC for Thymus cells, T-15-489


title: scATAC for Thymus cells, T-15-506


title: scATAC for Thymus cells, T-15-488


title: scATAC for Thymus cells, T-15-485


title: scATAC for Thymus cells, T-15-486


title: scATAC for Thymus cells, T-15-482


title: scATAC for Thymus cells, T-15-483


title: scATAC for Thymus cells, T-15-496


title: scATAC for Thymus cells, T-14-224


title: scATAC for Thymus cells, T-14-223


title: scATAC for Thymus cells, T-14-221


title: scATAC for Thymus cells, T-14-222


title: scATAC for Thymus cells, T-14-220


title: scATAC for Thymus cells, T-14-218


title: scATAC for Thymus cells, T-14-219


title: scATAC for Thymus cells, T-15-490


title: scATAC for Thymus cells, T-14-217


title: scATAC for Thymus cells, T-14-215


title: scATAC for Thymus cells, T-14-216


title: scATAC for Thymus cells, T-14-214


title: scATAC for Thymus cells, T-14-213


title: scATAC for Thymus cells, T-14-211


title: scATAC for Thymus cells, T-14-209


title: scATAC for Thymus cells, T-14-205


title: scATAC for Thymus cells, T-14-207


title: scATAC for Thymus cells, T-15-487


title: scATAC for Thymus cells, T-15-484


title: scATAC for Thymus cells, T-14-201


title: scATAC for Thymus cells, T-14-200


title: scATAC for Thymus cells, T-15-481


title: scATAC for Thymus cells, T-14-199


title: scATAC for Thymus cells, T-14-196


title: scATAC for Thymus cells, T-14-197


title: scATAC for Thymus cells, T-14-194


title: scATAC for Thymus cells, T-13-477


title: scATAC for Thymus cells, T-14-161


title: scATAC for Thymus cells, T-14-208


title: scATAC for Thymus cells, T-13-476


title: scATAC for Thymus cells, T-13-475


title: scATAC for Thymus cells, T-13-478


title: scATAC for Thymus cells, T-13-473


title: scATAC for Thymus cells, T-13-474


title: scATAC for Thymus cells, T-13-469


title: scATAC for Thymus cells, T-13-466


title: scATAC for Thymus cells, T-13-470


title: scATAC for Thymus cells, T-13-467


title: scATAC for Thymus cells, T-13-471


title: scATAC for Thymus cells, T-14-204


title: scATAC for Thymus cells, T-13-464


title: scATAC for Thymus cells, T-13-468


title: scATAC for Thymus cells, T-13-463


title: scATAC for Thymus cells, T-13-472


title: scATAC for Thymus cells, T-13-462


title: scATAC for Thymus cells, T-13-460


title: scATAC for Thymus cells, T-13-459


title: scATAC for Thymus cells, T-13-458


title: scATAC for Thymus cells, T-13-479


title: scATAC for Thymus cells, T-13-457


title: scATAC for Thymus cells, T-13-456


title: scATAC for Thymus cells, T-13-461


title: scATAC for Thymus cells, T-13-480


title: scATAC for Thymus cells, T-13-455


title: scATAC for Thymus cells, T-13-454


title: scATAC for Thymus cells, T-13-453


title: scATAC for Thymus cells, T-13-452


title: scATAC for Thymus cells, T-13-451


title: scATAC for Thymus cells, T-13-417


title: scATAC for Thymus cells, T-13-450


title: scATAC for Thymus cells, T-12-442


title: scATAC for Thymus cells, T-12-446


title: scATAC for Thymus cells, T-12-447


title: scATAC for Thymus cells, T-12-440


title: scATAC for Thymus cells, T-12-444


title: scATAC for Thymus cells, T-12-448


title: scATAC for Thymus cells, T-12-449


title: scATAC for Thymus cells, T-12-443


title: scATAC for Thymus cells, T-12-437


title: scATAC for Thymus cells, T-12-438


title: scATAC for Thymus cells, T-12-439


title: scATAC for Thymus cells, T-12-441


title: scATAC for Thymus cells, T-12-433


title: scATAC for Thymus cells, T-12-431


title: scATAC for Thymus cells, T-12-436


title: scATAC for Thymus cells, T-12-435


title: scATAC for Thymus cells, T-12-434


title: scATAC for Thymus cells, T-12-428


title: scATAC for Thymus cells, T-12-429


title: scATAC for Thymus cells, T-12-426


title: scATAC for Thymus cells, T-12-427


title: scATAC for Thymus cells, T-12-425


title: scATAC for Thymus cells, T-12-445


title: scATAC for Thymus cells, T-12-424


title: scATAC for Thymus cells, T-12-423


title: scATAC for Thymus cells, T-12-421


title: scATAC for Thymus cells, T-12-422


title: scATAC for Thymus cells, T-13-465


title: scATAC for Thymus cells, T-12-418


title: scATAC for Thymus cells, T-11-416


title: scATAC for Thymus cells, T-11-415


title: scATAC for Thymus cells, T-11-412


title: scATAC for Thymus cells, T-12-420


title: scATAC for Thymus cells, T-11-410


title: scATAC for Thymus cells, T-11-413


title: scATAC for Thymus cells, T-12-430


title: scATAC for Thymus cells, T-11-409


title: scATAC for Thymus cells, T-11-408


title: scATAC for Thymus cells, T-11-404


title: scATAC for Thymus cells, T-11-402


title: scATAC for Thymus cells, T-11-411


title: scATAC for Thymus cells, T-11-401


title: scATAC for Thymus cells, T-11-396


title: scATAC for Thymus cells, T-11-405


title: scATAC for Thymus cells, T-11-394


title: scATAC for Thymus cells, T-11-397


title: scATAC for Thymus cells, T-11-391


title: scATAC for Thymus cells, T-11-390


title: scATAC for Thymus cells, T-11-393


title: scATAC for Thymus cells, T-12-419


title: scATAC for Thymus cells, T-11-387


title: scATAC for Thymus cells, T-11-389


title: scATAC for Thymus cells, T-11-385


title: scATAC for Thymus cells, T-11-414


title: scATAC for Thymus cells, T-10-193


title: scATAC for Thymus cells, T-10-190


title: scATAC for Thymus cells, T-10-191


title: scATAC for Thymus cells, T-10-188


title: scATAC for Thymus cells, T-10-187


title: scATAC for Thymus cells, T-10-185


title: scATAC for Thymus cells, T-10-184


title: scATAC for Thymus cells, T-10-186


title: scATAC for Thymus cells, T-11-399


title: scATAC for Thymus cells, T-10-183


title: scATAC for Thymus cells, T-10-179


title: scATAC for Thymus cells, T-10-180


title: scATAC for Thymus cells, T-10-178


title: scATAC for Thymus cells, T-10-181


title: scATAC for Thymus cells, T-10-176


title: scATAC for Thymus cells, T-11-388


title: scATAC for Thymus cells, T-10-177


title: scATAC for Thymus cells, T-10-175


title: scATAC for Thymus cells, T-10-173


title: scATAC for Thymus cells, T-10-174


title: scATAC for Thymus cells, T-10-172


title: scATAC for Thymus cells, T-10-171


title: scATAC for Thymus cells, T-10-169


title: scATAC for Thymus cells, T-10-192


title: scATAC for Thymus cells, T-10-170


title: scATAC for Thymus cells, T-10-189


title: scATAC for Thymus cells, T-10-166


title: scATAC for Thymus cells, T-10-167


title: scATAC for Thymus cells, T-10-168


title: scATAC for Thymus cells, T-1-8


title: scATAC for Thymus cells, T-1-9


title: scATAC for Thymus cells, T-10-164


title: scATAC for Thymus cells, T-10-182


title: scATAC for Thymus cells, T-10-162


title: scATAC for Thymus cells, T-10-163


title: scATAC for Thymus cells, T-1-33


title: scATAC for Thymus cells, T-1-7


title: scATAC for Thymus cells, T-15-498


title: scATAC for Thymus cells, T-1-31


title: scATAC for Thymus cells, T-1-6


title: scATAC for Thymus cells, T-1-4


title: scATAC for Thymus cells, T-1-32


title: scATAC for Thymus cells, T-1-29


title: scATAC for Thymus cells, T-1-3


title: scATAC for Thymus cells, T-1-25


title: scATAC for Thymus cells, T-1-26


title: scATAC for Thymus cells, T-1-28


title: scATAC for Thymus cells, T-1-27


title: scATAC for Thymus cells, T-1-24


title: scATAC for Thymus cells, T-1-23


title: scATAC for Thymus cells, T-1-22


title: scATAC for Thymus cells, T-1-20


title: scATAC for Thymus cells, T-1-19


title: scATAC for Thymus cells, T-1-18


title: scATAC for Thymus cells, T-1-13


title: scATAC for Thymus cells, T-1-17


title: scATAC for Thymus cells, T-10-165


title: scATAC for Thymus cells, T-1-16


title: scATAC for Thymus cells, DP-31310


title: scATAC for Thymus cells, T-1-10


title: scATAC for Thymus cells, DP-31298


title: scATAC for Thymus cells, DP-31307


title: scATAC for Thymus cells, DP-31304


title: scATAC for Thymus cells, DP-31286


title: scATAC for Thymus cells, DP-31282


title: scATAC for Thymus cells, DP-31280


title: scATAC for Thymus cells, DP-31268


title: scATAC for Thymus cells, DP-31261


title: scATAC for Thymus cells, DP-31264


title: scATAC for Thymus cells, T-1-2


title: scATAC for Thymus cells, DP-31251


title: scATAC for Thymus cells, T-1-21


title: scATAC for Thymus cells, DP-31273


title: scATAC for Thymus cells, DP-31248


title: scATAC for Thymus cells, DP-31247


title: scATAC for Thymus cells, T-1-30


title: scATAC for Thymus cells, DP-31246


title: scATAC for Thymus cells, T-1-15


title: scATAC for Thymus cells, T-1-12


title: scATAC for Thymus cells, DP-31242


title: scATAC for Thymus cells, T-1-11


title: scATAC for Thymus cells, DP-31237


title: scATAC for Thymus cells, DP-31240


title: scATAC for Thymus cells, DP-31249


title: scATAC for Thymus cells, DP-31236


title: scATAC for Thymus cells, DP-31234


title: scATAC for Thymus cells, DP-31229


title: scATAC for Thymus cells, DP-31228


title: scATAC for Thymus cells, DP-31231


title: scATAC for Thymus cells, DN-32063


title: scATAC for Thymus cells, DP-31217


title: scATAC for Thymus cells, DP-31218


title: scATAC for Thymus cells, DP-31220


title: scATAC for Thymus cells, DN-32058


title: scATAC for Thymus cells, DN-32059


title: scATAC for Thymus cells, DN-32061


title: scATAC for Thymus cells, DN-32060


title: scATAC for Thymus cells, DN-32064


title: scATAC for Thymus cells, DN-32062


title: scATAC for Thymus cells, DP-31225


title: scATAC for Thymus cells, DN-32056


title: scATAC for Thymus cells, DN-32055


title: scATAC for Thymus cells, DN-32054


title: scATAC for Thymus cells, DN-32052


title: scATAC for Thymus cells, DN-32051


title: scATAC for Thymus cells, DN-32050


title: invivo_SW_4_r2

city: Lausanne

first: Silvia

last: Brochet

state: Vaud

address: UNIL campus, Biophore building

department: Department of Fundamental Microbiology

country: Switzerland

institute: University of Lausanne

library_source: transcriptomic

data_processing:
Trimming for adapters and quality using trimmomatic
For the in vivo: separation of rRNA and non-rRNA reads using sortmerna
Mapping to reference with bowtie2
Generation of count files with HtSeq
Differential gene expression analysis with EdgeR
Genome_build: Lapi = https://www.ncbi.nlm.nih.gov/nuccore/NZ_CP029476.1
Genome_build: Lhel = https://www.ncbi.nlm.nih.gov/nuccore/NZ_CP029544.1
Genome_build: Lmel = https://www.ncbi.nlm.nih.gov/nuccore/NZ_QGLG00000000.1
Genome_build: Lkul = https://www.ncbi.nlm.nih.gov/nuccore/NZ_CP029477.1
Supplementary_files_format_and_content: .count files containing counts per gene obtained with HtSeq

molecule: total RNA

organism:
Lactobacillus apis
Lactobacillus kullabergensis
Lactobacillus helsingborgensis
Lactobacillus melliventris

source_name: Honey bee rectum tissue

growth_protocol: For the in vitro samples: bacteria were grown in basal medium supplemented with either glucose (G) or pollen extract (PE) for 16 hours at 34˚C in anarobic conditions

extract_protocol:
For the in vivo samples: bacteria were harvested from rectums of bees that were fed with sugar water + pollen grains (SWPG) or with sugar water (SW) only 5 days post-colonization
For the in vitro samples libraries were prepared following the protocol published in Nature Protocols by Avraham et al. (2016). For the in vivo samples libraries were prepared using the Zymo-Seq RiboFree Total RNA Library kit (Zymo Research).

tag: phylotype

value: Lactobacillus Firm5

tag: treatment

value: Sugar water

tag: strain

value: Community (mixture of all species)

tag: Stage

value: 5 days post-colonization


title: invivo_SW_3_r2


title: invivo_SW_1_r2


title: invivo_SWPG_5

value: Sugar water and pollen grains


title: scATAC for Thymus cells, DN-32049


title: invivo_SWPG_4


title: scATAC for Thymus cells, DN-32047


title: invivo_SWPG_3


title: scATAC for Thymus cells, DN-32046


title: scATAC for Thymus cells, DN-32057


title: invivo_SW_5


title: invivo_SWPG_1


title: scATAC for Thymus cells, DN-32045


title: scATAC for Thymus cells, T-1-5


title: scATAC for Thymus cells, DN-32044


title: invivo_SWPG_2


title: scATAC for Thymus cells, DN-32043


title: invivo_SW_2


title: invivo_SW_3


title: scATAC for Thymus cells, DN-32042


title: invivo_SW_1


title: invivo_SW_4


title: scATAC for Thymus cells, DN-32041


title: invitro_s186_PE_2

organism: Lactobacillus kullabergensis

source_name: In vitro culture

value: Pollen extract

value: Lkul

value: 16 hours post-inoculation


title: invitro_s186_PE_3


title: scATAC for Thymus cells, DN-32040


title: scATAC for Thymus cells, DN-32039


title: scATAC for Thymus cells, DN-32037


title: scATAC for Thymus cells, DN-32038


title: scATAC for Thymus cells, DN-32036


title: invitro_s186_PE_1


title: invitro_s186_G_3

value: Glucose


title: scATAC for Thymus cells, DN-32035


title: invitro_s186_G_1


title: scATAC for Thymus cells, DN-32048


title: invitro_s186_G_2


title: scATAC for Thymus cells, DN-32033


title: scATAC for Thymus cells, DN-32032


title: invitro_s185_PE_3

organism: Lactobacillus apis

value: Lapi


title: scATAC for Thymus cells, DN-32031


title: invitro_s185_PE_2


title: invitro_s185_G_3


title: scATAC for Thymus cells, DN-32028


title: scATAC for Thymus cells, DN-32030


title: invitro_s185_PE_1


title: invitro_s185_G_2


title: scATAC for Thymus cells, DN-32027


title: invitro_s185_G_1


title: scATAC for Thymus cells, DN-32026


title: scATAC for Thymus cells, DN-32024


title: scATAC for Thymus cells, DN-32025


title: invitro_s184_PE_1

organism: Lactobacillus melliventris

value: Lmel


title: invitro_s184_PE_3


title: scATAC for Thymus cells, DN-32023


title: invitro_s184_G_3


title: invitro_s184_G_2


title: scATAC for Thymus cells, DN-32022


title: scATAC for Thymus cells, DN-32019


title: invitro_s183_PE_3

organism: Lactobacillus helsingborgensis

value: Lhel


title: invitro_s184_PE_2


title: invitro_s183_PE_2


title: scATAC for Thymus cells, DN-32020


title: scATAC for Thymus cells, DN-32018


title: invitro_s184_G_1


title: invitro_s183_PE_1


title: scATAC for Thymus cells, DN-32029


title: scATAC for Thymus cells, DN-32017


title: scATAC for Thymus cells, DN-32016


title: invitro_s183_G_3


title: scATAC for Thymus cells, DN-32015


title: scATAC for Thymus cells, DN-32021


title: scATAC for Thymus cells, DN-32011


title: scATAC for Thymus cells, DN-32013


title: scATAC for Thymus cells, DN-32012


title: scATAC for Thymus cells, DN-32010


title: scATAC for Thymus cells, DN-32008


title: scATAC for Thymus cells, DN-32007


title: scATAC for Thymus cells, DN-32006


title: invitro_s183_G_2


title: invitro_s183_G_1


title: scATAC for Thymus cells, DN-32014


title: scATAC for Thymus cells, DN-32002


title: scATAC for Thymus cells, DN-32003


title: P11A04569A

city: Lund

first: Yvonne

last: Ceder

address: Scheelevägen 2

country: Sweden

institute: Lund University

description:
FC5_S26
Single-end small RNA sequencing
Urinary_miRNA_counts.txt

data_processing:
Demultiplexed, adapters trimmed and 4N random nucleotides removed.
Genome_build: hg19 (GRCh37)
Supplementary_files_format_and_content: Urinary_miRNA_counts.txt: Tab-delimited text file includes counts.

organism: Homo sapiens

source_name: Urinary extracellular vesicles

extract_protocol:
RNA isolation were performed using the Norgen single cell isolation kit.
Libraries were constructed using the Perkin Elmer's NEXTFlex library preparation with overnight 3'-ligation, and libraries were size selected by Blue Pippin 3% agarose gel to ~ 145 - 165 nt in length.

treatment_protocol: Urinary Evs were isolated by acoustic trapping followed by RNase A treatment at 37oC.

tag: cell type

value: Urinary extracellular vesicles

value: high

tag: gleason_category (low

value: gleason grade <=3 and bx-negative, high:gleason grade >=4):NA


title: P11A06091A

description:
FC2_S15
Single-end small RNA sequencing
Urinary_miRNA_counts.txt

value: low


title: P16A05855A

description:
FC4_S30
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A06116A

description:
FC5_S27
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04570A

description:
FC1_S35
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P16A04437A

description:
FC3_S21
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, DN-32009

value: 7 weeks

value: male

value: Thymus


title: scATAC for Thymus cells, DN-32005


title: P11A06075A

description:
FC1_S10
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A04564A

description:
FC5_S23
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, DN-32004


title: P17A04435A

description:
FC1_S34
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, DN-32001


title: scATAC for Thymus cells, DN-31215


title: scATAC for Thymus cells, DN-31213


title: scATAC for Thymus cells, DN-31212


title: scATAC for Thymus cells, DN-31214


title: scATAC for Thymus cells, DN-31211


title: scATAC for Thymus cells, DP-31277


title: P17A04430A

description:
FC3_S19
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A04535A

description:
FC3_S33
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04470A

description:
FC2_S31
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A04589A

description:
FC4_S21
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, DN-31207


title: P14A05693A

description:
FC1_S19
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, DN-31209


title: scATAC for Thymus cells, DN-31205


title: scATAC for Thymus cells, DN-31203


title: scATAC for Thymus cells, DN-31202


title: scATAC for Thymus cells, DN-31201


title: P14A05707A

description:
FC4_S35
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A06086A

description:
FC1_S12
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04493A

description:
FC2_S30
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A04538A

description:
FC4_S36
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P16A04431A

description:
FC2_S35
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A04459A

description:
FC4_S31
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P14A05759A

description:
FC4_S2
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, DN-31206

description:
scATAC for Thymus cells
scATAC_Accesson.txt


title: scATAC for Thymus cells, DN-31199


title: scATAC for Thymus cells, DN-31198


title: scATAC for Thymus cells, DN-31193


title: scATAC for Thymus cells, DN-31195


title: scATAC for Thymus cells, DN-31197


title: scATAC for Thymus cells, DN-31196


title: P12A04507A

description:
FC4_S3
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, DN-31192


title: P11A06101A

description:
FC5_S30
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04466A

description:
FC2_S34
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A05863A

description:
FC5_S19
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P17A04441A

description:
FC3_S13
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P14A05473A

description:
FC4_S17
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, DN-31200


title: scATAC for Thymus cells, DN-31188


title: P17A04442A

description:
FC3_S15
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A04550A

description:
FC4_S29
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P15A06128A

description:
FC3_S12
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A04563A

description:
FC1_S16
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, DN-31185


title: scATAC for Thymus cells, CD8-31177


title: P11A06076A

description:
FC3_S11
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A06131A

description:
FC2_S5
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P14A05890A

description:
FC4_S12
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD8-31165


title: scATAC for Thymus cells, CD8-31167


title: scATAC for Thymus cells, CD8-31164


title: scATAC for Thymus cells, CD8-31171


title: scATAC for Thymus cells, DN-31184


title: P11A04553A

description:
FC5_S15
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD8-31160


title: scATAC for Thymus cells, CD8-31153


title: scATAC for Thymus cells, CD8-31152


title: P11A04593A

description:
FC5_S35
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04503A

description:
FC3_S6
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A04573A

description:
FC5_S10
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04541A

description:
FC3_S7
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD8-31150

description:
scATAC for Thymus cells
scATAC_Accesson.txt


title: P11A04551A

description:
FC3_S9
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD8-31157


title: scATAC for Thymus cells, CD8-31148


title: P11A04584A

description:
FC5_S12
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD8-31147


title: P12A04501A

description:
FC3_S4
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD8-31145


title: scATAC for Thymus cells, CD8-31144


title: P17A04433A

description:
FC4_S10
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P16A04436A

description:
FC3_S3
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: Plasma_Healthy Control_N87

type: RNA

city: Nanjing

first: Chen

last: Lu

address: Guangzhou Road

department: Department of General Surgery

institute: The First Affiliated Hospital of Nanjing Medical University

description:
CircRNA expression in plasma of healthy control
N87:gProcessedSignal(normalized)

hyb_protocol: DNA in hybridization solution was denatured at 95℃ for 3 min prior to loading onto a microarray. Arrays were hybridized was preformed in a Agilent Hybridization Oven overnight at a rotation speed of 20 rpm at 42℃ and washed with two consecutive solutions (0.2% SDS, 2× SSC at 42℃ for 5 min, and 0.2× SSC for 5 min at room temperature).

scan_protocol: Scanned on an Agilent G2565CA scanner.

data_processing: Feature Extraction v10.7 (Agilent Technologies, CA) software was used to extract all features of the data obtained from the scanned images and genespring software was used to analyze the raw data, which are normalized by percentile normalization.

source_name: Plasma, Healthy Control

label_protocol: cDNA labeled with a fluorescent dye (Cy3-dCTP) was produced by Eberwine’s linear RNA amplification method and subsequent enzymatic reaction. This procedure has been previously described, and the procedure has been improved by using CapitalBio cRNA Amplification and Labeling Kit (CapitalBio) for producing higher yields of labeled cDNA.

extract_protocol: RNA was prepared using the TRIzol reagent following the manufacturer's recommendations.  RNA was quantified using a NanoDrop-1000 spectrophotometer.

tag: subject status

value: healthy control

tag: gender

value: Female

value: Plasma

tag: molecule subtype

value: CircRNA


title: P11A06119A

description:
FC4_S1
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD8-31137


title: P11A04477A

description:
FC4_S28
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04517A

description:
FC3_S25
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A04574A

description:
FC3_S5
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD8-31131


title: scATAC for Thymus cells, CD8-31128


title: scATAC for Thymus cells, CD8-31123


title: scATAC for Thymus cells, CD4-31113


title: scATAC for Thymus cells, CD4-31112


title: P12A04471A

description:
FC1_S25
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P14A05926A

description:
FC2_S26
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A06112A

description:
FC3_S20
Single-end small RNA sequencing
Urinary_miRNA_counts.txt

value: gleason grade <=3 and bx-negative, high:gleason grade >=4):high


title: P11A06106A

description:
FC1_S33
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04476A

description:
FC1_S1
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31110


title: Plasma_Hepatocellular Carcinoma_A5

description:
CircRNA expression in plasma of hepatocellular carcinoma
A5:gProcessedSignal(normalized)

source_name: Plasma, Hepatocellular Carcinoma

value: Hepatocellular Carcinoma

value: Male


title: scATAC for Thymus cells, DN-31187

description:
scATAC for Thymus cells
scATAC_Accesson.txt


title: Plasma_Hepatocellular Carcinoma_A2

description:
CircRNA expression in plasma of hepatocellular carcinoma
A2:gProcessedSignal(normalized)


title: P12A04468A

description:
FC4_S18
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31109


title: scATAC for Thymus cells, CD4-31106


title: P12A04516A

description:
FC4_S32
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A04591A

description:
FC5_S8
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31108


title: P12A04474A

description:
FC2_S20
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31104


title: Plasma_Healthy Control_N85

description:
CircRNA expression in plasma of healthy control
N85:gProcessedSignal(normalized)


title: scATAC for Thymus cells, CD4-31103


title: P11A04575A

description:
FC2_S17
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A06118A

description:
FC2_S16
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD8-31130


title: Plasma_Healthy Control_N82

description:
CircRNA expression in plasma of healthy control
N82:gProcessedSignal(normalized)


title: scATAC for Thymus cells, CD4-31101


title: P01A06375A

description:
FC3_S24
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31100


title: Plasma_Hepatocellular Carcinoma_A1

description:
CircRNA expression in plasma of hepatocellular carcinoma
A1:gProcessedSignal(normalized)


title: P19A02173A

description:
FC3_S22
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A06079A

description:
FC5_S22
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31097


title: scATAC for Thymus cells, CD4-31099


title: P16A07165A

description:
FC2_S22
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31096


title: scATAC for Thymus cells, CD4-31098


title: P11A06357A

description:
FC1_S21
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31091


title: scATAC for Thymus cells, CD4-31090


title: P12A04537A

description:
FC4_S34
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31094

description:
scATAC for Thymus cells
scATAC_Accesson.txt


title: P12A04465A

description:
FC5_S4
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A06763A

description:
FC4_S20
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31084


title: scATAC for Thymus cells, CD4-31081


title: P11A06078A

description:
FC1_S31
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31080


title: scATAC for Thymus cells, CD4-31077


title: P11A06105A

description:
FC3_S26
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31078


title: P11A06189A

description:
FC4_S19
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A06126A

description:
FC1_S2
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04509A

description:
FC2_S33
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31082


title: scATAC for Thymus cells, CD4-31074


title: scATAC for Thymus cells, CD4-31071


title: P12A04461A

description:
FC4_S23
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31073


title: P11A04555A

description:
FC2_S29
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31085


title: P01A06521A

description:
FC3_S30
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A04578A

description:
FC4_S27
Single-end small RNA sequencing
Urinary_miRNA_counts.txt

value: gleason grade <=3 and bx-negative, high:gleason grade >=4):low


title: P12A04577A

description:
FC2_S25
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31065


title: P06A06649A

description:
FC1_S27
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A04478A

description:
FC5_S32
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31064


title: scATAC for Thymus cells, CD4-31063


title: P11A06074A

description:
FC3_S23
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P32A04590A

description:
FC4_S22
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A04586A

description:
FC2_S9
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04566A

description:
FC2_S32
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31061

description:
scATAC for Thymus cells
scATAC_Accesson.txt


title: P14A06377A

description:
FC1_S20
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04496A

description:
FC1_S11
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04587A

description:
FC1_S18
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31060


title: scATAC for Thymus cells, CD4-31069


title: P11A06933A

description:
FC5_S21
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: AAA20190703Tissue

city: Ann Arbor

first: Lam

last: Tsoi

state: MI

address: Medical Sciences 1 Bldg. 1301 E. Catherine

country: USA

institute: University of Michigan

data_processing:
data processing including quality control, read alignment and gene quantification were conducted using the 10X Cell Ranger software
Seurat was then used for normalization, data integration, and clustering analysis
Genome_build: GRCh37
Supplementary_files_format_and_content: 10X read count files

source_name: biopsy

extract_protocol:
Aortic tissue from aneurysmal and non-aneurysmal controls was harvested at the time of surgical intervention.
Samples were minced, digested in 0.2% Collagenase II (Life Technologies) and 0.2% Collagenase V (Sigma) in plain medium for 1 hour at 37°C, and strained through a 70μM mesh.

tag: disease state

value: non-aneurysmal control

value: Aortic tissue


title: AAA20190617Tissue

value: Abdominal aortic aneurysm (AAA)


title: AAA20191127


title: AAA20190524TissueNina


title: scATAC for Thymus cells, CD4-31056


title: P29A06680A

description:
FC4_S8
Single-end small RNA sequencing
Urinary_miRNA_counts.txt

value: Urinary extracellular vesicles

value: high

value: unk


title: P11A06311A

description:
FC5_S9
Single-end small RNA sequencing
Urinary_miRNA_counts.txt

value: low


title: scATAC for Thymus cells, CD4-31055

value: 7 weeks

value: male


title: P11A06109A

description:
FC2_S2
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: AAA20190226Tissue


title: P16A06136A

description:
FC3_S17
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: AAA20190524Tissue


title: scATAC for Thymus cells, CD4-31054

value: Thymus


title: P11A06932A

description:
FC4_S5
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P19A02164A

description:
FC1_S26
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P01A06522A

description:
FC2_S13
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04559A

description:
FC1_S14
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31053


title: Kmt6 mycelia 2 days rep.2

city: Hangzhou

first: Chuyu

last: Lin

state: Zhejiang

address: 866#, Yuhangtang Road

department: College of Agriculture and Biotechnology

institute: Zhejiang University

data_processing:
RNAs were sequenced separately at Novogene, using Illumina Hiseq X-Ten with Hiseq-PE150 strategy.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence. The clean reads were mapped to the reference genome of M. oryzae (MSU release 7) using TopHat software with default settings (Daehwan Kim, 2013). For analysis of differential expression, the assembled transcripts from three independent biological replicates in the WT and deletion mutants were included and compared using Cuffdiff with default settings (Trapnell et al., 2010).
To calculate the significance of the overlap of two sets of genes, P value with Fisher’s exact test for overlapping was performed with online test (the total number of genes in the M. oryzae genome used was 14317). (http://nemates.org/MA/progs/overlap_stats.html).
Genome_build: MG8
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

organism: Pyricularia oryzae

source_name: mycelia

growth_protocol: The Magnaporthe oryzae strains were grown on CM medium at 28℃ in the dark for 2 days, followed by growth under continuous lights for 5 days. Then taking 4-5 pieces of mycelia and culture them in liquid CM medium for 2 days.The mycelia were harvested by 2-3 layers of Miracloth.

extract_protocol:
Total RNA was extracted from mycelia cultured in the liquid CM for 2 days from three biological repeats using the TRIzol (Invitrogen, USA) reagent according to the manufacturer’s instruction.
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: genotype

value: mutant

tag: developmental stage

value: mycelia

tag: time

value: 2 days


title: Kmt6 mycelia 2 days rep.3


title: P12A04504A

description:
FC1_S8
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31051


title: P11A06130A

description:
FC5_S33
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: Kmt6 mycelia 2 days rep.1


title: P11A06090A

description:
FC3_S27
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A06093A

description:
FC5_S31
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04495A

description:
FC3_S28
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P01A06374A

description:
FC1_S4
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: WT mycelia 2 days rep.3

value: wild type


title: scATAC for Thymus cells, CD4-31046

description:
scATAC for Thymus cells
scATAC_Accesson.txt


title: scATAC for Thymus cells, CD4-31050


title: scATAC for Thymus cells, CD4-31059


title: scATAC for Thymus cells, CD4-31045


title: WT mycelia 2 days rep.1


title: P11A04565A

description:
FC2_S10
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A06104A

description:
FC2_S12
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A04915A

description:
FC3_S18
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P55 mycelia 2 days rep 3


title: P16A06856A

description:
FC5_S24
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31042


title: P55 mycelia 2 days rep 2


title: P12A04533A

description:
FC5_S28
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31041


title: P12A04530A

description:
FC5_S6
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31040


title: P16A06684A

description:
FC3_S32
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: WT mycelia 2 days rep.2


title: scATAC for Thymus cells, CD4-31039


title: P11A06111A

description:
FC3_S31
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P24A02109A

description:
FC1_S17
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P55 mycelia 2 days rep 1


title: SUZ12 mycelia 2 days rep 3


title: scATAC for Thymus cells, CD4-31036


title: P19A02169A

description:
FC2_S23
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A06077A

description:
FC2_S36
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04534A

description:
FC5_S34
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04545A

description:
FC2_S18
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A06239A

description:
FC4_S24
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04515A

description:
FC1_S6
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: SUZ12 mycelia 2 days rep 1


title: scATAC for Thymus cells, CD4-31031


title: SUZ12 mycelia 2 days rep 2


title: EED mycelia 2 days rep 3

value: EED


title: scATAC for Thymus cells, CD4-31032


title: P12A04488A

description:
FC2_S21
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A06081A

description:
FC5_S5
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P20A02189A

description:
FC3_S35
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: EED mycelia 2 days rep 2


title: P12A04481A

description:
FC2_S24
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31029

description:
scATAC for Thymus cells
scATAC_Accesson.txt


title: scATAC for Thymus cells, CD4-31030


title: EED mycelia 2 days rep 1


title: P11A06124A

description:
FC3_S16
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A04450A

description:
FC5_S20
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: KMT6 mycelia 2 days rep 3


title: P14A05585A

description:
FC1_S13
Single-end small RNA sequencing
Urinary_miRNA_counts.txt

value: gleason grade <=3 and bx-negative, high:gleason grade >=4):NA


title: scATAC for Thymus cells, CD4-31024


title: P16A03386A

description:
FC1_S32
Single-end small RNA sequencing
Urinary_miRNA_counts.txt

value: gleason grade <=3 and bx-negative, high:gleason grade >=4):low


title: P11A06125A

description:
FC5_S18
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04527A

description:
FC4_S16
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: KMT6 mycelia 2 days rep 2


title: P11A04560A

description:
FC2_S7
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31023


title: KMT6 mycelia 2 days rep 1


title: P11A04595A

description:
FC1_S9
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A04572A

description:
FC2_S28
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: scATAC for Thymus cells, CD4-31022


title: WT mycelia 2 days rep 3


title: scRNA for Thymus cells

description:
scRNA for Thymus cells
10x_log2_q_norm.txt

source_name: T cells


title: P11A04917A

description:
FC4_S14
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04473A

description:
FC4_S13
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: WT mycelia 2 days rep 2


title: P11A06260A

description:
FC2_S19
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A06129A

description:
FC1_S7
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: A_9193 F_4w

city: New York

first: Mohammad

last: Kabbani

state: NY

address: 1230 York Ave, Box 64

institute: The Rockefeller University

data_processing:
STAR(v2.5) for reference genome alingment
HTseq-count for gene level count tables
lima/voom for for differential gene expression
g:profiler for GO, KEGG, REAC and TF
Genome_build: hg38, mm10
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

source_name: liver

extract_protocol:
Ca. 25 mg of freshly harvested liver tissue was placed into 1ml 4ºC TRIzol homogenized, weighed and stored at -80ºC. Chloroform extraction was performed together with DNAse treatment to purify RNA.
Library construction and sequencing were performed using Illumina S4 flowcell on Novaseq 6000 platform with a paired-end read length of 150 bp.

tag: diet

value: 4wk WD

tag: rs738409 pnpla3 genotype

tag: human hepatocyte donor


title: A_9159 F_chow

value: chow


title: scATAC for Thymus cells, CD4-31026

tag: age

tag: Sex

tag: tissue


title: P04A04526A

description:
FC1_S30
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A06096A

description:
FC5_S11
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: A_1734 F_4w


title: P12A04556A

description:
FC2_S14
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P20A02191A

description:
FC1_S15
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04500A

description:
FC2_S27
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: A_9209 F_chow


title: P12A04467A

description:
FC4_S7
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: Sin3 mycelia 2 days rep2

tag: strain


title: P11A06095A

description:
FC5_S13
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: A_2005 Yec_4w


title: P12A04523A

description:
FC3_S2
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A06098A

description:
FC4_S33
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: A_2004 Yec_4w


title: P12A04479A

description:
FC4_S11
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: WT mycelia 2 days rep2


title: P11A06070A

description:
FC1_S5
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: A_2001 Yec_4w


title: P16A04440A

description:
FC4_S25
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P11A06991A

description:
FC5_S25
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P26A02102A

description:
FC2_S11
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: A_1003 Yec_chow


title: Sin3 mycelia 2 days rep3


title: P29A06681A

description:
FC4_S9
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: P12A04583A

description:
FC3_S34
Single-end small RNA sequencing
Urinary_miRNA_counts.txt


title: mycelia - H3K27me3_set7_rep2_IP

data_processing:
High-throughput sequencing was carried out using Illumina Hiseq-PE150 by Novogene Corporation (Beijing, China) for Illumina (Langmead et al., 2009).
The clean read pairs were mapped to the reference genome with Bowtie2 (Version 2.2.8) (Langmead and Salzberg, 2012)
Enriched peaks were called by MACS2 (Version 2.1.1) with default parameters (Zhang et al., 2008).
Genome_build: MG8
Supplementary_files_format_and_content: peak text files
Supplementary_files_format_and_content: bedGraph

growth_protocol: TheMagnaporthe oryzae strains were grown on CM medium at 28℃ in the dark for 2 days, followed by growth under continuous lights for 5 days. Then taking 10-12 pieces of mycelia and culture them in liquid CM medium for 2 days.The mycelia were harvested by 2-3 layers of Miracloth.

extract_protocol:
The ChIP experiments with mycelia cultured in liquid CM for 2 days were conducted as previous reports with minor modification (He et al., 2018; Tao et al., 2017). Briefly, 1.0 g mycelia were crosslinked with 1% formaldehyde for 20 mins and stopped with 125 mM glycine for 5 mins at room temperature. Samples were ground with liquid nitrogen and resuspended in nuclei isolating buffer. Subsequently the precipitated nuclei were used to total chromatin extraction with 1mL lysis buffer. The lysis chromatin was sonicated into DNA fragments between 200-500 bp using Diagenode Bioruptor. 20μL chromatin was used to input DNA extraction and the remainder was pre-cleared with 10μL protein A Dynabeads (Thermofisher, 10001D) for 1 hour. Subsequently the chromatin was incubated with anti-H3K27me3 (Abcam, ab6002) or anti- H3K4ac (Active Motif, 39381) overnight at 4°C. Another 20μL protein A Dynabeads was used capture protein-DNA mixture and followed by three washing. Protein-DNA mixture was reverse-crosslinked, and DNA was recovered with phenol-chloroform extraction. The recovery DNA was used as template for followed ChIP-qPCR and ChIP-seq. Two biological repeats were conducted.
The purified DNA was used as libraries construction with the NEBNext Ultra II DNA Library Prep Kit for Illumina (NEB, E7645L).

treatment_protocol: The mycelia were crosslinked with 1% formaldehyde for 20 mins and stopped with 125 mM glycine for 5 mins at room temperature

tag: antibody


title: A_1002 Yec_chow


title: P11A06092A

description:
FC5_S3
Single-end small RNA sequencing
Urinary_miRNA_counts.txt

tag: cell type


title: Sin3 mycelia 2 days rep1