title: Histone ChIP-seq from spleen (ENCLB049TJO)

description:
https://www.encodeproject.org/experiments/ENCSR756THI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on spleen male adult (26 years)
experiment encode accession: ENCSR756THI
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR200QAA
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB049TJO
fragmentation methods: sonication (generic)
size range: 200-600

tag: Sex


title: HCC1395 GapmeR 2 N3

status: Public on Feb 28 2021

type: RNA

city: Halifax

first: Paola

last: Marcato

state: Nova Scotia

address: 11F11, 5850 College Street

department: Pathology

country: Canada

institute: Dalhousie University

description: cultured cells

hyb_protocol: 16h at 48oC, Affymetrix miRNA 4.0

scan_protocol: Affymetrix GeneChip Scanner 3000(Scanner#4)

data_processing: RMA expression value derived from Expression Console software

label: FlashTag Biotin HSR RNA Labeling Kit

molecule: total RNA

organism: Homo sapiens

source_name: HCC1395 cells

label_protocol: FlashTag Biotin HSR RNA Labeling Kit

growth_protocol: The cell lines were obtained from the American Type Culture Collection (ATCC) and were cultured as per ATCC guidelines

extract_protocol: cells were collected and RNA purified using the mirVana™ miRNA Isolation Kit following the manufacturer’s instructions.

treatment_protocol: cultured cells treated for 48hours with GapmeRs

tag: cell line

tag: treatment

value: PART1 GapmeR 2


title: Histone ChIP-seq from tibial artery (ENCLB804PGE)

status: Public on Feb 27 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR753HPM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR753HPM
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR819JOI
encode release date: 2019-02-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB804PGE
fragmentation methods: sonication (generic)
size range: 200-600

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

source_name: Homo sapiens male adult (54 years) tibial artery tissue

tag: antibody

value: tibial artery

value: tissue

tag: description

value: EnTEX:Artery - Tibial

tag: biosample encode accession

value: male

tag: dev stage

value: adult

tag: age

value: 54 year

tag: lab

value: Bradley Bernstein, Broad

tag: link

value: ENCBS736PQK at ENCODE; https://www.encodeproject.org/ENCBS736PQK/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: HCC1395 GapmeR 2 N2

description: cultured cells


title: HCC1395 GapmeR 1 N2

description: cultured cells

value: PART1 GapmeR 1


title: HCC1395 GapmeR 1 N1

description: cultured cells


title: HCC1806 GapmeR 1 N3

description: cultured cells

source_name: HCC1806 cells


title: HCC1395 GapmeR 2 N1

description: cultured cells


title: HCC1395 negative control GapmeR N1

description: cultured cells

value: negative control GapmeR


title: Control ChIP-seq from spleen (ENCLB567LII)

description:
https://www.encodeproject.org/experiments/ENCSR749YQP/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on spleen female adult (41 years)
experiment encode accession: ENCSR749YQP
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB567LII
size range: 200-600

source_name: Homo sapiens female adult (41 years) spleen tissue, preserved by flash-freezing

value: spleen

value: female

tag: health state

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Michael Snyder, Stanford

tag: source

value: Yiing Lin, MD, PhD

value: ENCBS248EXJ at ENCODE; https://www.encodeproject.org/ENCBS248EXJ/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: HCC1395 negative control GapmeR N2

description: cultured cells


title: HCC1806 GapmeR 2 N2

description: cultured cells

value: PART1 GapmeR 2


title: HCC1806 GapmeR 1 N1

description: cultured cells


title: HCC1806 negative control GapmeR N2

description: cultured cells


title: HCC1806 negative control GapmeR N1

description: cultured cells


title: HCC1806 GapmeR 2 N1

description: cultured cells


title: Histone ChIP-seq from spleen (ENCLB116QRD)

description:
https://www.encodeproject.org/experiments/ENCSR747JSA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on spleen female adult (59 years)
experiment encode accession: ENCSR747JSA
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR955OYW
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB116QRD
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (59 years) spleen tissue, preserved by flash-freezing

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: ENCBS297MNR at ENCODE; https://www.encodeproject.org/ENCBS297MNR/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: HCC1806 GapmeR 2 N3

description: cultured cells


title: Histone ChIP-seq from uterus (ENCLB541XMQ)

description:
https://www.encodeproject.org/experiments/ENCSR743GCE/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR743GCE
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR859LXC
encode release date: 2018-12-15
lab: Bradley Bernstein, Broad
library encode accession: ENCLB541XMQ
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (51 year) uterus tissue

value: uterus

value: adult

value: 51 year

value: Bradley Bernstein, Broad

value: ENCBS102SRR at ENCODE; https://www.encodeproject.org/ENCBS102SRR/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: 3dpi

city: New Haven

first: Craig

middle: B

last: Wilen

state: CT

address: 333 Cedar Street

department: Laboratory Medicine

institute: Yale School of Medicine

library_source: transcriptomic

data_processing:
See manuscript (Ravindra et al. PLoS Biol, 2021) for full details. Reads with a cell barcode were retained and reads with UMIs were aligned to a combined human, viral reference (GenBank MT020880.1) to create a gene counts matrix using cellranger v3.1.0.
Gene counts matrix was filtered, normalized, and square root transformed for downstream analysis, using the standard scRNA-seq pre-processing recipe in SCANPY v1.4.6 (see manuscript, Ravindra et al. PLoS Biol, 2021) for full details. Imputed data, embedding coordinates, and metadata are stored in the standard AnnData object slots.

source_name: Human bronchial epithelial cells

growth_protocol: Human bronchial epithelial cells were maintained in PneumaCult-ALI Medium.

extract_protocol:
All preparation of samples were done using the Chromium Next GEM 3' protocol by 10X Genomics.
All library preparation were done using the Chromium Next GEM 3' protocol by 10X Genomics.

treatment_protocol: Differentiated human bronchial epithelial cells were infected with SARS-CoV-2 on the apical side of the transwell.

tag: tissue

value: Primary cell line

tag: sample type

value: Co-cultured with SARS-CoV-2 for 3 days


title: Histone ChIP-seq from uterus (ENCLB460SZY)

description:
https://www.encodeproject.org/experiments/ENCSR743GCE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR743GCE
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR859LXC
encode release date: 2018-12-15
lab: Bradley Bernstein, Broad
library encode accession: ENCLB460SZY
fragmentation methods: sonication (generic)
size range: 200-600

value: female

value: ENCBS443NGH at ENCODE; https://www.encodeproject.org/ENCBS443NGH/


title: Histone ChIP-seq from lower lobe of left lung (ENCLB719OLE)

description:
https://www.encodeproject.org/experiments/ENCSR740HSU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on lower lobe of left lung male adult (60 years)
experiment encode accession: ENCSR740HSU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR089ZLR
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB719OLE
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens male adult (60 years) lower lobe of left lung tissue, preserved by flash-freezing

value: lower lobe of left lung

value: male

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: 60 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS105KGA at ENCODE; https://www.encodeproject.org/ENCBS105KGA/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: 2dpi

value: Co-cultured with SARS-CoV-2 for 2 days


title: Control ChIP-seq from spleen (ENCLB545QAR)

description:
https://www.encodeproject.org/experiments/ENCSR749YQP/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on spleen female adult (41 years)
experiment encode accession: ENCSR749YQP
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB545QAR
size range: 200-600

value: spleen

value: tissue

value: DM:no; HTN:no; CAD:no

value: adult

value: 41 year

value: ENCBS248EXJ at ENCODE; https://www.encodeproject.org/ENCBS248EXJ/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Histone ChIP-seq from lower lobe of left lung (ENCLB459CVC)

description:
https://www.encodeproject.org/experiments/ENCSR740HSU/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on lower lobe of left lung male adult (60 years)
experiment encode accession: ENCSR740HSU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR089ZLR
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB459CVC
fragmentation methods: sonication (generic)
size range: 200-600


title: Histone ChIP-seq from skin epidermis (ENCLB319ILY)

description:
https://www.encodeproject.org/experiments/ENCSR685XVI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq of skin epidermis male adult (78 years). Note that tissue excised from donor is adjacent epidermis from Mohs cancer removal procedure.
experiment encode accession: ENCSR685XVI
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR360NJD
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB319ILY
fragmentation methods: none
size range: 200-600

source_name: Homo sapiens male adult (78 years) skin epidermis tissue

value: skin epidermis

value: tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari. These cells contain no tumor.

value: keratinocyte carcinoma surgical removal

value: 78 year

value: Bradley Bernstein, Broad

value: Maryam M. Asgari, MD, MPH

value: ENCBS792ZTG at ENCODE; https://www.encodeproject.org/ENCBS792ZTG/

value: Derived from ENCODE donor ENCDO054KII; https://www.encodeproject.org/ENCDO054KII/


title: Histone ChIP-seq from uterus (ENCLB631UAG)

description:
https://www.encodeproject.org/experiments/ENCSR743GCE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR743GCE
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR859LXC
encode release date: 2018-12-15
lab: Bradley Bernstein, Broad
library encode accession: ENCLB631UAG
fragmentation methods: sonication (generic)
size range: 200-600

value: uterus

value: female

value: 51 year

value: ENCBS102SRR at ENCODE; https://www.encodeproject.org/ENCBS102SRR/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: Histone ChIP-seq from tibial artery (ENCLB287EMX)

description:
https://www.encodeproject.org/experiments/ENCSR753HPM/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR753HPM
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR819JOI
encode release date: 2019-02-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB287EMX
fragmentation methods: sonication (generic)
size range: 200-600

value: tibial artery

value: tissue

value: EnTEX:Artery - Tibial

value: male

value: adult

value: 54 year

value: ENCBS736PQK at ENCODE; https://www.encodeproject.org/ENCBS736PQK/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: Histone ChIP-seq from spleen (ENCLB683MLQ)

description:
https://www.encodeproject.org/experiments/ENCSR747JSA/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on spleen female adult (59 years)
experiment encode accession: ENCSR747JSA
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR955OYW
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB683MLQ
fragmentation methods: sonication (generic)
size range: 200-600

value: spleen

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS297MNR at ENCODE; https://www.encodeproject.org/ENCBS297MNR/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Control ChIP-seq from skin epidermis (ENCLB440UOR)

description:
https://www.encodeproject.org/experiments/ENCSR704QBF/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq of skin epidermis male adult (75 years). Note that tissue excised from donor is adjacent epidermis from Mohs cancer removal procedure.
experiment encode accession: ENCSR704QBF
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB440UOR
size range: 200-600

source_name: Homo sapiens male adult (75 years) skin epidermis tissue

value: skin epidermis

value: tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari. These cells contain no tumor.

value: keratinocyte carcinoma surgical removal

value: 75 year

value: Bradley Bernstein, Broad

value: Maryam M. Asgari, MD, MPH

value: ENCBS497HUD at ENCODE; https://www.encodeproject.org/ENCBS497HUD/

value: Derived from ENCODE donor ENCDO317WFZ; https://www.encodeproject.org/ENCDO317WFZ/


title: Histone ChIP-seq from skin epidermis (ENCLB891IGR)

description:
https://www.encodeproject.org/experiments/ENCSR700LWI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq of keratinocyte squamous cell carcinoma female adult (64 years). Note that tissue excised from donor is cancerous.
experiment encode accession: ENCSR700LWI
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR906OSH
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB891IGR
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (64 years) skin epidermis tissue with squamous cell carcinoma

value: tissue

value: SCC tumor tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari.

value: female

value: adult

value: 64 year

value: ENCBS078OEW at ENCODE; https://www.encodeproject.org/ENCBS078OEW/

value: Derived from ENCODE donor ENCDO736MLL; https://www.encodeproject.org/ENCDO736MLL/


title: Histone ChIP-seq from spleen (ENCLB710LIX)

description:
https://www.encodeproject.org/experiments/ENCSR708TAB/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 ChIP-seq on spleen female adult (41 years)
experiment encode accession: ENCSR708TAB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR749YQP
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB710LIX
fragmentation methods: sonication (generic)
size range: 200-600

value: spleen

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS248EXJ at ENCODE; https://www.encodeproject.org/ENCBS248EXJ/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Histone ChIP-seq from spleen (ENCLB325HKR)

description:
https://www.encodeproject.org/experiments/ENCSR708TAB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on spleen female adult (41 years)
experiment encode accession: ENCSR708TAB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR749YQP
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB325HKR
fragmentation methods: sonication (generic)
size range: 200-600


title: HCC1806 GapmeR 1 N2

description: cultured cells

value: PART1 GapmeR 1


title: Control ChIP-seq from pancreas (ENCLB926CWM)

description:
https://www.encodeproject.org/experiments/ENCSR490NCK/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on pancreas female adult (59 years)
experiment encode accession: ENCSR490NCK
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB926CWM
size range: 200-600

source_name: Homo sapiens female adult (59 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: ENCBS483KZB at ENCODE; https://www.encodeproject.org/ENCBS483KZB/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Histone ChIP-seq from spleen (ENCLB617GPJ)

description:
https://www.encodeproject.org/experiments/ENCSR668GBL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR668GBL
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR711URW
encode release date: 2019-09-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB617GPJ
fragmentation methods: sonication (generic)
size range: 200-600
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500

source_name: Homo sapiens female adult (51 years) spleen tissue

value: tissue

value: female

value: adult

value: 51 year

value: Bradley Bernstein, Broad

value: Kristin Ardlie

value: ENCBS892ESJ at ENCODE; https://www.encodeproject.org/ENCBS892ESJ/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: HCC1806 negative control GapmeR N3

description: cultured cells

value: negative control GapmeR


title: Histone ChIP-seq from heart left ventricle (ENCLB698IDU)

description:
https://www.encodeproject.org/experiments/ENCSR485LPA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on heart left ventricle female adult (59 years)
experiment encode accession: ENCSR485LPA
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR120ITZ
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB698IDU
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 53
nucleic acid starting quantity units: ng

source_name: Homo sapiens female adult (59 years) heart left ventricle tissue, preserved by flash-freezing

value: heart left ventricle

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS830TZX at ENCODE; https://www.encodeproject.org/ENCBS830TZX/


title: Histone ChIP-seq from skin epidermis (ENCLB557ZKQ)

description:
https://www.encodeproject.org/experiments/ENCSR720DYZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq of keratinocyte basal cell carcinoma male adult (77 years). Note that tissue excised from donor is cancerous.
experiment encode accession: ENCSR720DYZ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR465UAX
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB557ZKQ
fragmentation methods: none
size range: 200-600

source_name: Homo sapiens male adult (77 years) skin epidermis tissue with basal cell carcinoma

value: skin epidermis

value: BCC tumor tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari.

value: male

value: keratinocyte carcinoma surgical removal

value: 77 year

value: Maryam M. Asgari, MD, MPH

value: ENCBS606CVB at ENCODE; https://www.encodeproject.org/ENCBS606CVB/

value: Derived from ENCODE donor ENCDO739SDJ; https://www.encodeproject.org/ENCDO739SDJ/


title: Histone ChIP-seq from spleen (ENCLB103OOG)

description:
https://www.encodeproject.org/experiments/ENCSR676FAM/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 ChIP-seq on spleen female adult (41 years)
experiment encode accession: ENCSR676FAM
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR749YQP
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB103OOG
fragmentation methods: sonication (generic)
size range: 200-600

value: spleen

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: adult

value: 41 year

value: ENCBS248EXJ at ENCODE; https://www.encodeproject.org/ENCBS248EXJ/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Histone ChIP-seq from spleen (ENCLB809AHN)

description:
https://www.encodeproject.org/experiments/ENCSR668GBL/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR668GBL
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR711URW
encode release date: 2019-09-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB809AHN
fragmentation methods: sonication (generic)
size range: 200-600

value: 51 year

value: Bradley Bernstein, Broad

value: Kristin Ardlie

value: ENCBS363GBQ at ENCODE; https://www.encodeproject.org/ENCBS363GBQ/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: Histone ChIP-seq from spleen (ENCLB105YZK)

description:
https://www.encodeproject.org/experiments/ENCSR676FAM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on spleen female adult (41 years)
experiment encode accession: ENCSR676FAM
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR749YQP
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB105YZK
fragmentation methods: sonication (generic)
size range: 200-600

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD


title: Histone ChIP-seq from Peyer's patch (ENCLB097UGT)

description:
https://www.encodeproject.org/experiments/ENCSR491FDG/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR491FDG
assay title: Histone ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR773UBR
encode release date: 2019-09-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB097UGT
fragmentation methods: none
size range: 200-600

source_name: Homo sapiens female adult (51 years) Peyer's patch tissue

value: Peyer's patch

value: EnTEX:Small Intestine - Terminal Ileum

value: ENCBS654VYQ at ENCODE; https://www.encodeproject.org/ENCBS654VYQ/


title: Histone ChIP-seq from skin epidermis (ENCLB247WEW)

description:
https://www.encodeproject.org/experiments/ENCSR697MUJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq of skin epidermis female adult (64 years). Note that tissue excised from donor is adjacent epidermis from Mohs cancer removal procedure.
experiment encode accession: ENCSR697MUJ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR932WVK
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB247WEW
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (64 years) skin epidermis tissue

value: skin epidermis

value: tissue

value: tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari. These cells contain no tumor.

value: keratinocyte carcinoma surgical removal

value: 64 year

value: Maryam M. Asgari, MD, MPH

value: ENCBS329VRH at ENCODE; https://www.encodeproject.org/ENCBS329VRH/

value: Derived from ENCODE donor ENCDO736MLL; https://www.encodeproject.org/ENCDO736MLL/


title: Histone ChIP-seq from transverse colon (ENCLB896SEC)

description:
https://www.encodeproject.org/experiments/ENCSR482OKN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR482OKN
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR651ISB
encode release date: 2020-01-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB896SEC
fragmentation methods: sonication (generic)
size range: 200-600
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500

source_name: Homo sapiens male adult (54 years) transverse colon tissue

value: transverse colon

value: EnTEX:Colon - Transverse

value: male

value: adult

value: 54 year

value: Bradley Bernstein, Broad

value: ENCBS989UNA at ENCODE; https://www.encodeproject.org/ENCBS989UNA/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: Histone ChIP-seq from heart left ventricle (ENCLB188MPP)

description:
https://www.encodeproject.org/experiments/ENCSR485LPA/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on heart left ventricle female adult (59 years)
experiment encode accession: ENCSR485LPA
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR120ITZ
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB188MPP
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 53
nucleic acid starting quantity units: ng

value: heart left ventricle

value: female

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS830TZX at ENCODE; https://www.encodeproject.org/ENCBS830TZX/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Histone ChIP-seq from Peyer's patch (ENCLB257BDA)

description:
https://www.encodeproject.org/experiments/ENCSR491FDG/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR491FDG
assay title: Histone ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR773UBR
encode release date: 2019-09-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB257BDA
fragmentation methods: none
size range: 200-600

value: Peyer's patch

value: tissue

value: EnTEX:Small Intestine - Terminal Ileum

value: 51 year

value: Kristin Ardlie

value: ENCBS654VYQ at ENCODE; https://www.encodeproject.org/ENCBS654VYQ/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: Histone ChIP-seq from spleen (ENCLB235NDK)

description:
https://www.encodeproject.org/experiments/ENCSR668GBL/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR668GBL
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR711URW
encode release date: 2019-09-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB235NDK
fragmentation methods: sonication (generic)
size range: 200-600
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: spleen

value: adult

value: Bradley Bernstein, Broad

value: ENCBS892ESJ at ENCODE; https://www.encodeproject.org/ENCBS892ESJ/


title: Histone ChIP-seq from heart left ventricle (ENCLB904BXS)

description:
https://www.encodeproject.org/experiments/ENCSR989PTS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on heart left ventricle male adult (40 years)
experiment encode accession: ENCSR989PTS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR945LPX
encode release date: 2020-09-15
lab: Bradley Bernstein, Broad
library encode accession: ENCLB904BXS
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens male adult (40 years) heart left ventricle tissue, preserved by flash-freezing

value: heart left ventricle

value: male

value: DM:no; HTN:yes; CAD:no

value: 40 year

value: ENCBS649GUV at ENCODE; https://www.encodeproject.org/ENCBS649GUV/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: Histone ChIP-seq from heart left ventricle (ENCLB743XYW)

description:
https://www.encodeproject.org/experiments/ENCSR989PTS/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on heart left ventricle male adult (40 years)
experiment encode accession: ENCSR989PTS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR945LPX
encode release date: 2020-09-15
lab: Bradley Bernstein, Broad
library encode accession: ENCLB743XYW
fragmentation methods: sonication (generic)
size range: 200-600

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD


title: Histone ChIP-seq from Peyer's patch (ENCLB589PFI)

description:
https://www.encodeproject.org/experiments/ENCSR491FDG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR491FDG
assay title: Histone ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR773UBR
encode release date: 2019-09-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB589PFI
fragmentation methods: sonication (generic)
size range: 200-600

value: Peyer's patch

value: tissue

value: EnTEX:Small Intestine - Terminal Ileum

value: female


title: Histone ChIP-seq from spleen (ENCLB354RKB)

description:
https://www.encodeproject.org/experiments/ENCSR479APW/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on spleen male adult (26 years)
experiment encode accession: ENCSR479APW
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR200QAA
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB354RKB
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens male adult (26 years) spleen tissue, preserved by flash-freezing

value: DM:no; HTN:no; CAD:no

value: 26 year

value: ENCBS498SQU at ENCODE; https://www.encodeproject.org/ENCBS498SQU/

value: Derived from ENCODE donor ENCDO221IPH; https://www.encodeproject.org/ENCDO221IPH/


title: Histone ChIP-seq from skin epidermis (ENCLB753GJZ)

description:
https://www.encodeproject.org/experiments/ENCSR683RXF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq of keratinocyte squamous cell carcinoma male adult (78 years). Note that tissue excised from donor is cancerous.
experiment encode accession: ENCSR683RXF
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR306YLG
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB753GJZ
fragmentation methods: none
size range: 200-600

source_name: Homo sapiens male adult (78 years) skin epidermis tissue with squamous cell carcinoma

value: skin epidermis

value: SCC tumor tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari.

value: keratinocyte carcinoma surgical removal

value: adult

value: 78 year

value: Bradley Bernstein, Broad

value: Maryam M. Asgari, MD, MPH

value: ENCBS198XCO at ENCODE; https://www.encodeproject.org/ENCBS198XCO/

value: Derived from ENCODE donor ENCDO054KII; https://www.encodeproject.org/ENCDO054KII/


title: Histone ChIP-seq from transverse colon (ENCLB132OUZ)

description:
https://www.encodeproject.org/experiments/ENCSR482OKN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR482OKN
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR651ISB
encode release date: 2020-01-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB132OUZ
fragmentation methods: sonication (generic)
size range: 200-600

value: transverse colon

value: EnTEX:Colon - Transverse

value: male

value: 54 year

value: Kristin Ardlie

value: ENCBS121FBL at ENCODE; https://www.encodeproject.org/ENCBS121FBL/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: Histone ChIP-seq from transverse colon (ENCLB071MDS)

description:
https://www.encodeproject.org/experiments/ENCSR482OKN/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR482OKN
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR651ISB
encode release date: 2020-01-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB071MDS
fragmentation methods: sonication (generic)
size range: 200-600

value: tissue

value: ENCBS989UNA at ENCODE; https://www.encodeproject.org/ENCBS989UNA/


title: Histone ChIP-seq from spleen (ENCLB571UKR)

description:
https://www.encodeproject.org/experiments/ENCSR668GBL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR668GBL
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR711URW
encode release date: 2019-09-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB571UKR
fragmentation methods: sonication (generic)
size range: 200-600

value: spleen

value: female

value: 51 year

value: ENCBS363GBQ at ENCODE; https://www.encodeproject.org/ENCBS363GBQ/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: Control ChIP-seq from pancreas (ENCLB940NSA)

description:
https://www.encodeproject.org/experiments/ENCSR490NCK/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on pancreas female adult (59 years)
experiment encode accession: ENCSR490NCK
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB940NSA
size range: 200-600

value: pancreas

value: DM:yes; HTN:yes; CAD:no

value: adult

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS483KZB at ENCODE; https://www.encodeproject.org/ENCBS483KZB/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Histone ChIP-seq from skin epidermis (ENCLB163XDW)

description:
https://www.encodeproject.org/experiments/ENCSR644SHG/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq of keratinocyte basal cell carcinoma male adult (58 years). Note that tissue excised from donor is cancerous.
experiment encode accession: ENCSR644SHG
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR564GJK
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB163XDW
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens male adult (58 years) skin epidermis tissue with basal cell carcinoma

value: skin epidermis

value: BCC tumor tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari.

value: male

value: keratinocyte carcinoma surgical removal. transplant recipient, iatrogenically immunosuppressed

value: 58 year

value: Bradley Bernstein, Broad

value: Maryam M. Asgari, MD, MPH

value: ENCBS486NQD at ENCODE; https://www.encodeproject.org/ENCBS486NQD/

value: Derived from ENCODE donor ENCDO536XJQ; https://www.encodeproject.org/ENCDO536XJQ/


title: Control ChIP-seq from pancreas (ENCLB489MBP)

description:
https://www.encodeproject.org/experiments/ENCSR462ZQL/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on pancreas female adult (41 years)
experiment encode accession: ENCSR462ZQL
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB489MBP
size range: 200-600

source_name: Homo sapiens female adult (41 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: 41 year

value: ENCBS212NYF at ENCODE; https://www.encodeproject.org/ENCBS212NYF/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Control ChIP-seq from pancreas (ENCLB026UUE)

description:
https://www.encodeproject.org/experiments/ENCSR462ZQL/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on pancreas female adult (41 years)
experiment encode accession: ENCSR462ZQL
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB026UUE
size range: 200-600

value: adult

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD


title: Histone ChIP-seq from Peyer's patch (ENCLB051KOA)

description:
https://www.encodeproject.org/experiments/ENCSR988QEK/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR988QEK
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR773UBR
encode release date: 2019-08-01
lab: Bradley Bernstein, Broad
library encode accession: ENCLB051KOA
fragmentation methods: sonication (generic)
size range: 200-600

value: Peyer's patch

value: EnTEX:Small Intestine - Terminal Ileum

value: 51 year

value: Kristin Ardlie

value: ENCBS654VYQ at ENCODE; https://www.encodeproject.org/ENCBS654VYQ/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: Histone ChIP-seq from lower lobe of left lung (ENCLB394RWB)

description:
https://www.encodeproject.org/experiments/ENCSR983LGF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on lower lobe of left lung male adult (60 years)
experiment encode accession: ENCSR983LGF
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR089ZLR
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB394RWB
fragmentation methods: sonication (generic)
size range: 200-600

value: lower lobe of left lung

value: male

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: 60 year

value: ENCBS105KGA at ENCODE; https://www.encodeproject.org/ENCBS105KGA/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: Histone ChIP-seq from lower lobe of left lung (ENCLB749QXM)

description:
https://www.encodeproject.org/experiments/ENCSR983LGF/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 ChIP-seq on lower lobe of left lung male adult (60 years)
experiment encode accession: ENCSR983LGF
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR089ZLR
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB749QXM
fragmentation methods: sonication (generic)
size range: 200-600

value: tissue


title: Histone ChIP-seq from left lung (ENCLB722JMI)

description:
https://www.encodeproject.org/experiments/ENCSR975GDL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on left lung male adult (40 years)
experiment encode accession: ENCSR975GDL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR936CZX
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB722JMI
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens male adult (40 years) left lung tissue, preserved by flash-freezing

value: left lung

value: DM:no; HTN:yes; CAD:no

value: 40 year

value: ENCBS628ZUJ at ENCODE; https://www.encodeproject.org/ENCBS628ZUJ/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: Histone ChIP-seq from prostate gland (ENCLB594CZN)

description:
https://www.encodeproject.org/experiments/ENCSR642CSX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR642CSX
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR113QDZ
encode release date: 2019-09-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB594CZN
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens male adult (54 years) prostate gland tissue

value: prostate gland

value: adult

value: 54 year

value: Bradley Bernstein, Broad

value: ENCBS633UTQ at ENCODE; https://www.encodeproject.org/ENCBS633UTQ/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: Control ChIP-seq from skin epidermis (ENCLB477XSI)

description:
https://www.encodeproject.org/experiments/ENCSR988CHU/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq of skin epidermis male adult (65 years). Note that tissue excised from donor is adjacent epidermis from Mohs cancer removal procedure.
experiment encode accession: ENCSR988CHU
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB477XSI
size range: 200-600

source_name: Homo sapiens male adult (65 years) skin epidermis tissue

value: skin epidermis

value: tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari. These cells contain no tumor.

value: male

value: keratinocyte carcinoma surgical removal. transplant recipient, iatrogenically immunosuppressed

value: 65 year

value: Maryam M. Asgari, MD, MPH

value: ENCBS499OVL at ENCODE; https://www.encodeproject.org/ENCBS499OVL/

value: Derived from ENCODE donor ENCDO180HAI; https://www.encodeproject.org/ENCDO180HAI/


title: Control ChIP-seq from skin epidermis (ENCLB264ULJ)

description:
https://www.encodeproject.org/experiments/ENCSR465UAX/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq of keratinocyte basal cell carcinoma male adult (77 years). Note that tissue excised from donor is cancerous.
experiment encode accession: ENCSR465UAX
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB264ULJ
size range: 200-600

value: tissue

value: BCC tumor tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari.

value: keratinocyte carcinoma surgical removal

value: 77 year

value: ENCBS606CVB at ENCODE; https://www.encodeproject.org/ENCBS606CVB/

value: Derived from ENCODE donor ENCDO739SDJ; https://www.encodeproject.org/ENCDO739SDJ/


title: Histone ChIP-seq from left lung (ENCLB092UET)

description:
https://www.encodeproject.org/experiments/ENCSR975GDL/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on left lung male adult (40 years)
experiment encode accession: ENCSR975GDL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR936CZX
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB092UET
fragmentation methods: sonication (generic)
size range: 200-600

value: left lung

value: DM:no; HTN:yes; CAD:no

value: adult

value: 40 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS628ZUJ at ENCODE; https://www.encodeproject.org/ENCBS628ZUJ/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: Control ChIP-seq from heart left ventricle (ENCLB075XFF)

description:
https://www.encodeproject.org/experiments/ENCSR945LPX/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on heart left ventricle male adult (40 years)
experiment encode accession: ENCSR945LPX
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB075XFF
size range: 200-600

value: heart left ventricle

value: male

value: ENCBS649GUV at ENCODE; https://www.encodeproject.org/ENCBS649GUV/


title: Histone ChIP-seq from prostate gland (ENCLB771DQR)

description:
https://www.encodeproject.org/experiments/ENCSR642CSX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR642CSX
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR113QDZ
encode release date: 2019-09-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB771DQR
fragmentation methods: sonication (generic)
size range: 200-600

value: prostate gland

value: tissue

value: 54 year

value: Bradley Bernstein, Broad

value: Kristin Ardlie

value: ENCBS619YXY at ENCODE; https://www.encodeproject.org/ENCBS619YXY/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: Control ChIP-seq from skin epidermis (ENCLB839UFW)

description:
https://www.encodeproject.org/experiments/ENCSR966IGL/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq of keratinocyte squamous cell carcinoma female adult (80 years). Note that tissue excised from donor is cancerous.
experiment encode accession: ENCSR966IGL
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB839UFW
size range: 200-600

source_name: Homo sapiens female adult (80 years) skin epidermis tissue with squamous cell carcinoma

value: skin epidermis

value: SCC tumor tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari.

value: female

value: keratinocyte carcinoma surgical removal

value: 80 year

value: Maryam M. Asgari, MD, MPH

value: ENCBS741KVA at ENCODE; https://www.encodeproject.org/ENCBS741KVA/

value: Derived from ENCODE donor ENCDO856JFL; https://www.encodeproject.org/ENCDO856JFL/


title: Control ChIP-seq from heart left ventricle (ENCLB671ZBD)

description:
https://www.encodeproject.org/experiments/ENCSR945LPX/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on heart left ventricle male adult (40 years)
experiment encode accession: ENCSR945LPX
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB671ZBD
size range: 200-600

value: heart left ventricle

value: male

value: DM:no; HTN:yes; CAD:no

value: adult

value: 40 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: Histone ChIP-seq from spleen (ENCLB417JWY)

description:
https://www.encodeproject.org/experiments/ENCSR612GKP/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on spleen female adult (41 years)
experiment encode accession: ENCSR612GKP
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR749YQP
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB417JWY
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (41 years) spleen tissue, preserved by flash-freezing

value: spleen

value: tissue

value: DM:no; HTN:no; CAD:no

value: 41 year

value: ENCBS248EXJ at ENCODE; https://www.encodeproject.org/ENCBS248EXJ/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Histone ChIP-seq from skin epidermis (ENCLB981ZRL)

description:
https://www.encodeproject.org/experiments/ENCSR969HBF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq of skin epidermis male adult (58 years). Note that tissue excised from donor is adjacent epidermis from Mohs cancer removal procedure.
experiment encode accession: ENCSR969HBF
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR914HOJ
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB981ZRL
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens male adult (58 years) skin epidermis tissue

value: skin epidermis

value: tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari. These cells contain no tumor.

value: keratinocyte carcinoma surgical removal. transplant recipient, iatrogenically immunosuppressed

value: 58 year

value: Bradley Bernstein, Broad

value: Maryam M. Asgari, MD, MPH

value: ENCBS270GKZ at ENCODE; https://www.encodeproject.org/ENCBS270GKZ/

value: Derived from ENCODE donor ENCDO536XJQ; https://www.encodeproject.org/ENCDO536XJQ/


title: Histone ChIP-seq from skin epidermis (ENCLB002SXM)

description:
https://www.encodeproject.org/experiments/ENCSR958CPV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq of keratinocyte squamous cell carcinoma male adult (84 years). Note that tissue excised from donor is cancerous.
experiment encode accession: ENCSR958CPV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR583XAM
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB002SXM
fragmentation methods: none
size range: 200-600

source_name: Homo sapiens male adult (84 years) skin epidermis tissue with squamous cell carcinoma

value: SCC tumor tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari.

value: male

value: keratinocyte carcinoma surgical removal

value: adult

value: 84 year

value: ENCBS238CLI at ENCODE; https://www.encodeproject.org/ENCBS238CLI/

value: Derived from ENCODE donor ENCDO799UNP; https://www.encodeproject.org/ENCDO799UNP/


title: Histone ChIP-seq from spleen (ENCLB547LBU)

description:
https://www.encodeproject.org/experiments/ENCSR612GKP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on spleen female adult (41 years)
experiment encode accession: ENCSR612GKP
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR749YQP
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB547LBU
fragmentation methods: sonication (generic)
size range: 200-600

value: spleen

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS248EXJ at ENCODE; https://www.encodeproject.org/ENCBS248EXJ/


title: Control ChIP-seq from skin epidermis (ENCLB126CHO)

description:
https://www.encodeproject.org/experiments/ENCSR621OKB/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq of skin epidermis female adult (80 years). Note that tissue excised from donor is adjacent epidermis from Mohs cancer removal procedure.
experiment encode accession: ENCSR621OKB
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB126CHO
size range: 200-600

source_name: Homo sapiens female adult (80 years) skin epidermis tissue

value: skin epidermis

value: tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari. These cells contain no tumor.

value: 80 year

value: Bradley Bernstein, Broad

value: Maryam M. Asgari, MD, MPH

value: ENCBS115YGN at ENCODE; https://www.encodeproject.org/ENCBS115YGN/

value: Derived from ENCODE donor ENCDO856JFL; https://www.encodeproject.org/ENCDO856JFL/


title: Histone ChIP-seq from skin epidermis (ENCLB157XQE)

description:
https://www.encodeproject.org/experiments/ENCSR641YLG/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq of skin epidermis male adult (77 years). Note that tissue excised from donor is adjacent epidermis from Mohs cancer removal procedure.
experiment encode accession: ENCSR641YLG
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR247FUH
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB157XQE
fragmentation methods: none
size range: 200-600

source_name: Homo sapiens male adult (77 years) skin epidermis tissue

value: male

value: keratinocyte carcinoma surgical removal

value: adult

value: 77 year

value: ENCBS488CYF at ENCODE; https://www.encodeproject.org/ENCBS488CYF/

value: Derived from ENCODE donor ENCDO739SDJ; https://www.encodeproject.org/ENCDO739SDJ/


title: Control ChIP-seq from spleen (ENCLB036EXI)

description:
https://www.encodeproject.org/experiments/ENCSR955OYW/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on spleen female adult (59 years)
experiment encode accession: ENCSR955OYW
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB036EXI
size range: 200-600

source_name: Homo sapiens female adult (59 years) spleen tissue, preserved by flash-freezing

value: spleen

value: tissue

value: female

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: ENCBS297MNR at ENCODE; https://www.encodeproject.org/ENCBS297MNR/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Histone ChIP-seq from spleen (ENCLB670YKH)

description:
https://www.encodeproject.org/experiments/ENCSR450AOR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on spleen male adult (26 years)
experiment encode accession: ENCSR450AOR
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR200QAA
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB670YKH
fragmentation methods: sonication (generic)
size range: 200-600

value: DM:no; HTN:no; CAD:no

value: 26 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS498SQU at ENCODE; https://www.encodeproject.org/ENCBS498SQU/

value: Derived from ENCODE donor ENCDO221IPH; https://www.encodeproject.org/ENCDO221IPH/


title: Histone ChIP-seq from spleen (ENCLB919RKN)

description:
https://www.encodeproject.org/experiments/ENCSR450AOR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on spleen male adult (26 years)
experiment encode accession: ENCSR450AOR
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR200QAA
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB919RKN
fragmentation methods: sonication (generic)
size range: 200-600

value: male

value: adult


title: Histone ChIP-seq from Peyer's patch (ENCLB846UEF)

description:
https://www.encodeproject.org/experiments/ENCSR988QEK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR988QEK
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR773UBR
encode release date: 2019-08-01
lab: Bradley Bernstein, Broad
library encode accession: ENCLB846UEF
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (51 years) Peyer's patch tissue

value: Peyer's patch

value: EnTEX:Small Intestine - Terminal Ileum

value: 51 year

value: Bradley Bernstein, Broad

value: Kristin Ardlie

value: ENCBS654VYQ at ENCODE; https://www.encodeproject.org/ENCBS654VYQ/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: Histone ChIP-seq from transverse colon (ENCLB050GNN)

description:
https://www.encodeproject.org/experiments/ENCSR604QMH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR604QMH
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR384KIB
encode release date: 2018-12-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB050GNN
fragmentation methods: none
size range: 200-600

source_name: Homo sapiens female adult (51 years) transverse colon tissue

value: transverse colon

value: tissue

value: EnTEX:Colon - Transverse

value: female

value: ENCBS555CAN at ENCODE; https://www.encodeproject.org/ENCBS555CAN/


title: Histone ChIP-seq from tibial artery (ENCLB088PKX)

description:
https://www.encodeproject.org/experiments/ENCSR940FNL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR940FNL
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR819JOI
encode release date: 2019-09-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB088PKX
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens male adult (54 years) tibial artery tissue

value: tibial artery

value: EnTEX:Artery - Tibial

value: 54 year

value: ENCBS736PQK at ENCODE; https://www.encodeproject.org/ENCBS736PQK/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: Histone ChIP-seq from transverse colon (ENCLB570DWX)

description:
https://www.encodeproject.org/experiments/ENCSR604QMH/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR604QMH
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR384KIB
encode release date: 2018-12-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB570DWX
fragmentation methods: sonication (generic)
size range: 200-600

value: adult

value: ENCBS515RIZ at ENCODE; https://www.encodeproject.org/ENCBS515RIZ/


title: Control ChIP-seq from skin epidermis (ENCLB633YZI)

description:
https://www.encodeproject.org/experiments/ENCSR932WVK/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq of skin epidermis female adult (64 years). Note that tissue excised from donor is adjacent epidermis from Mohs cancer removal procedure.
experiment encode accession: ENCSR932WVK
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB633YZI
size range: 200-600

source_name: Homo sapiens female adult (64 years) skin epidermis tissue

value: skin epidermis

value: tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari. These cells contain no tumor.

value: keratinocyte carcinoma surgical removal

value: 64 year

value: Maryam M. Asgari, MD, MPH

value: ENCBS329VRH at ENCODE; https://www.encodeproject.org/ENCBS329VRH/

value: Derived from ENCODE donor ENCDO736MLL; https://www.encodeproject.org/ENCDO736MLL/


title: Histone ChIP-seq from transverse colon (ENCLB083TVT)

description:
https://www.encodeproject.org/experiments/ENCSR604QMH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR604QMH
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR384KIB
encode release date: 2018-12-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB083TVT
fragmentation methods: sonication (generic)
size range: 200-600

value: transverse colon

value: tissue

value: EnTEX:Colon - Transverse

value: 51 year

value: Bradley Bernstein, Broad

value: Kristin Ardlie

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: Histone ChIP-seq from transverse colon (ENCLB234XOV)

description:
https://www.encodeproject.org/experiments/ENCSR604QMH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR604QMH
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR384KIB
encode release date: 2018-12-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB234XOV
fragmentation methods: none
size range: 200-600

value: female

value: ENCBS555CAN at ENCODE; https://www.encodeproject.org/ENCBS555CAN/


title: Control ChIP-seq from left lung (ENCLB201TEL)

description:
https://www.encodeproject.org/experiments/ENCSR936CZX/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on left lung male adult (40 years)
experiment encode accession: ENCSR936CZX
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB201TEL
size range: 200-600

value: left lung

value: male

value: DM:no; HTN:yes; CAD:no

value: adult

value: 40 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS628ZUJ at ENCODE; https://www.encodeproject.org/ENCBS628ZUJ/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: Control ChIP-seq from left lung (ENCLB873YAA)

description:
https://www.encodeproject.org/experiments/ENCSR936CZX/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on left lung male adult (40 years)
experiment encode accession: ENCSR936CZX
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB873YAA
size range: 200-600

value: tissue


title: Histone ChIP-seq from spleen (ENCLB312NKW)

description:
https://www.encodeproject.org/experiments/ENCSR922KKS/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on spleen female adult (59 years)
experiment encode accession: ENCSR922KKS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR955OYW
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB312NKW
fragmentation methods: sonication (generic)
size range: 200-600

value: spleen

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: ENCBS297MNR at ENCODE; https://www.encodeproject.org/ENCBS297MNR/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Control ChIP-seq from skin epidermis (ENCLB558QOW)

description:
https://www.encodeproject.org/experiments/ENCSR438NOO/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq of keratinocyte basal cell carcinoma male adult (67 years). Note that tissue excised from donor is cancerous.
experiment encode accession: ENCSR438NOO
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB558QOW
size range: 200-600

source_name: Homo sapiens male adult (67 years) skin epidermis tissue with basal cell carcinoma

value: skin epidermis

value: BCC tumor tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari.

value: keratinocyte carcinoma surgical removal

value: 67 year

value: Bradley Bernstein, Broad

value: Maryam M. Asgari, MD, MPH

value: ENCBS786EKF at ENCODE; https://www.encodeproject.org/ENCBS786EKF/

value: Derived from ENCODE donor ENCDO128KBJ; https://www.encodeproject.org/ENCDO128KBJ/


title: Control ChIP-seq from skin epidermis (ENCLB075MCE)

description:
https://www.encodeproject.org/experiments/ENCSR914HOJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq of skin epidermis male adult (58 years). Note that tissue excised from donor is adjacent epidermis from Mohs cancer removal procedure.
experiment encode accession: ENCSR914HOJ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB075MCE
size range: 200-600

value: tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari. These cells contain no tumor.

value: male

value: keratinocyte carcinoma surgical removal. transplant recipient, iatrogenically immunosuppressed

value: adult

value: 58 year

value: ENCBS270GKZ at ENCODE; https://www.encodeproject.org/ENCBS270GKZ/

value: Derived from ENCODE donor ENCDO536XJQ; https://www.encodeproject.org/ENCDO536XJQ/


title: Histone ChIP-seq from skin epidermis (ENCLB898UEI)

description:
https://www.encodeproject.org/experiments/ENCSR919BBI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq of skin epidermis female adult (48 years). Note that tissue excised from donor is adjacent epidermis from Mohs cancer removal procedure.
experiment encode accession: ENCSR919BBI
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR327PYZ
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB898UEI
fragmentation methods: none
size range: 200-600

source_name: Homo sapiens female adult (48 years) skin epidermis tissue

value: tissue

value: female

value: 48 year

value: ENCBS214YHD at ENCODE; https://www.encodeproject.org/ENCBS214YHD/

value: Derived from ENCODE donor ENCDO615YQP; https://www.encodeproject.org/ENCDO615YQP/


title: Histone ChIP-seq from spleen (ENCLB357VLR)

description:
https://www.encodeproject.org/experiments/ENCSR922KKS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on spleen female adult (59 years)
experiment encode accession: ENCSR922KKS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR955OYW
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB357VLR
fragmentation methods: sonication (generic)
size range: 200-600

value: spleen

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS297MNR at ENCODE; https://www.encodeproject.org/ENCBS297MNR/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Histone ChIP-seq from heart left ventricle (ENCLB868HOH)

description:
https://www.encodeproject.org/experiments/ENCSR433LHD/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 ChIP-seq on heart left ventricle female adult (46 years)
experiment encode accession: ENCSR433LHD
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR403VPZ
encode release date: 2020-09-15
lab: Bradley Bernstein, Broad
library encode accession: ENCLB868HOH
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (46 years) heart left ventricle tissue, preserved by flash-freezing

value: heart left ventricle

value: DM:no; HTN:no; CAD:no

value: 46 year

value: ENCBS273XUE at ENCODE; https://www.encodeproject.org/ENCBS273XUE/

value: Derived from ENCODE donor ENCDO411EVD; https://www.encodeproject.org/ENCDO411EVD/


title: Histone ChIP-seq from gastroesophageal sphincter (ENCLB272FVM)

description:
https://www.encodeproject.org/experiments/ENCSR238SWA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR238SWA
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR728EIP
encode release date: 2019-02-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB272FVM
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens male adult (54 years) gastroesophageal sphincter tissue

value: gastroesophageal sphincter

value: tissue

value: EnTEX:Esophagus - Gastroesophageal Junction

value: male

value: adult

value: 54 year

value: Bradley Bernstein, Broad

value: Kristin Ardlie

value: ENCBS542QYP at ENCODE; https://www.encodeproject.org/ENCBS542QYP/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: Control ChIP-seq from skin epidermis (ENCLB147HCH)

description:
https://www.encodeproject.org/experiments/ENCSR906OSH/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq of keratinocyte squamous cell carcinoma female adult (64 years). Note that tissue excised from donor is cancerous.
experiment encode accession: ENCSR906OSH
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB147HCH
size range: 200-600

source_name: Homo sapiens female adult (64 years) skin epidermis tissue with squamous cell carcinoma

value: skin epidermis

value: SCC tumor tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari.

value: female

value: keratinocyte carcinoma surgical removal

value: 64 year

value: Maryam M. Asgari, MD, MPH

value: ENCBS078OEW at ENCODE; https://www.encodeproject.org/ENCBS078OEW/

value: Derived from ENCODE donor ENCDO736MLL; https://www.encodeproject.org/ENCDO736MLL/


title: Histone ChIP-seq from gastroesophageal sphincter (ENCLB866HQM)

description:
https://www.encodeproject.org/experiments/ENCSR238SWA/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR238SWA
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR728EIP
encode release date: 2019-02-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB866HQM
fragmentation methods: sonication (generic)
size range: 200-600

value: gastroesophageal sphincter

value: tissue


title: Histone ChIP-seq from heart left ventricle (ENCLB995GHP)

description:
https://www.encodeproject.org/experiments/ENCSR433LHD/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on heart left ventricle female adult (46 years)
experiment encode accession: ENCSR433LHD
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR403VPZ
encode release date: 2020-09-15
lab: Bradley Bernstein, Broad
library encode accession: ENCLB995GHP
fragmentation methods: sonication (generic)
size range: 200-600

value: heart left ventricle

value: DM:no; HTN:no; CAD:no

value: 46 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS273XUE at ENCODE; https://www.encodeproject.org/ENCBS273XUE/

value: Derived from ENCODE donor ENCDO411EVD; https://www.encodeproject.org/ENCDO411EVD/


title: Histone ChIP-seq from heart left ventricle (ENCLB142JUG)

description:
https://www.encodeproject.org/experiments/ENCSR421GEN/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on heart left ventricle female adult (59 years)
experiment encode accession: ENCSR421GEN
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR120ITZ
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB142JUG
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 37
nucleic acid starting quantity units: ng

source_name: Homo sapiens female adult (59 years) heart left ventricle tissue, preserved by flash-freezing

value: DM:yes; HTN:yes; CAD:no

value: adult

value: 59 year

value: ENCBS830TZX at ENCODE; https://www.encodeproject.org/ENCBS830TZX/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Histone ChIP-seq from heart left ventricle (ENCLB748PNY)

description:
https://www.encodeproject.org/experiments/ENCSR421GEN/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on heart left ventricle female adult (59 years)
experiment encode accession: ENCSR421GEN
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR120ITZ
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB748PNY
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 37
nucleic acid starting quantity units: ng

value: female


title: Histone ChIP-seq from heart left ventricle (ENCLB760LPS)

description:
https://www.encodeproject.org/experiments/ENCSR912VCU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on heart left ventricle female adult (46 years)
experiment encode accession: ENCSR912VCU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR403VPZ
encode release date: 2020-09-15
lab: Bradley Bernstein, Broad
library encode accession: ENCLB760LPS
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 67
nucleic acid starting quantity units: ng


title: Histone ChIP-seq from gastroesophageal sphincter (ENCLB189QOL)

description:
https://www.encodeproject.org/experiments/ENCSR237GVU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR237GVU
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR728EIP
encode release date: 2019-08-01
lab: Bradley Bernstein, Broad
library encode accession: ENCLB189QOL
fragmentation methods: sonication (generic)
size range: 200-600

value: EnTEX:Esophagus - Gastroesophageal Junction

value: male

value: 54 year

value: Bradley Bernstein, Broad

value: Kristin Ardlie

value: ENCBS542QYP at ENCODE; https://www.encodeproject.org/ENCBS542QYP/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: Histone ChIP-seq from gastroesophageal sphincter (ENCLB801EBD)

description:
https://www.encodeproject.org/experiments/ENCSR237GVU/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR237GVU
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR728EIP
encode release date: 2019-08-01
lab: Bradley Bernstein, Broad
library encode accession: ENCLB801EBD
fragmentation methods: sonication (generic)
size range: 200-600

value: gastroesophageal sphincter

value: tissue


title: Histone ChIP-seq from heart left ventricle (ENCLB899VDM)

description:
https://www.encodeproject.org/experiments/ENCSR912VCU/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on heart left ventricle female adult (46 years)
experiment encode accession: ENCSR912VCU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR403VPZ
encode release date: 2020-09-15
lab: Bradley Bernstein, Broad
library encode accession: ENCLB899VDM
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 67
nucleic acid starting quantity units: ng

value: heart left ventricle

value: DM:no; HTN:no; CAD:no

value: 46 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS273XUE at ENCODE; https://www.encodeproject.org/ENCBS273XUE/


title: Histone ChIP-seq from heart left ventricle (ENCLB941FKV)

description:
https://www.encodeproject.org/experiments/ENCSR284DWQ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 ChIP-seq on heart left ventricle female adult (59 years)
experiment encode accession: ENCSR284DWQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR120ITZ
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB941FKV
fragmentation methods: sonication (generic)
size range: 200-600

value: DM:yes; HTN:yes; CAD:no

value: adult

value: 59 year

value: ENCBS830TZX at ENCODE; https://www.encodeproject.org/ENCBS830TZX/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Histone ChIP-seq from heart left ventricle (ENCLB499EOM)

description:
https://www.encodeproject.org/experiments/ENCSR284DWQ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on heart left ventricle female adult (59 years)
experiment encode accession: ENCSR284DWQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR120ITZ
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB499EOM
fragmentation methods: sonication (generic)
size range: 200-600

value: female


title: Histone ChIP-seq from spleen (ENCLB683RVK)

description:
https://www.encodeproject.org/experiments/ENCSR593INW/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR593INW
assay title: Histone ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR803JPO
encode release date: 2019-09-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB683RVK
fragmentation methods: none
size range: 200-600

source_name: Homo sapiens male adult (54 years) spleen tissue

value: spleen

value: male

value: 54 year

value: Bradley Bernstein, Broad

value: Kristin Ardlie

value: ENCBS223WIE at ENCODE; https://www.encodeproject.org/ENCBS223WIE/


title: Histone ChIP-seq from pancreas (ENCLB603SEX)

description:
https://www.encodeproject.org/experiments/ENCSR912QMS/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on pancreas female adult (41 years)
experiment encode accession: ENCSR912QMS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR462ZQL
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB603SEX
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (41 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: tissue

value: DM:no; HTN:no; CAD:no

value: 41 year

value: ENCBS212NYF at ENCODE; https://www.encodeproject.org/ENCBS212NYF/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Histone ChIP-seq from uterus (ENCLB602OAG)

description:
https://www.encodeproject.org/experiments/ENCSR216EVK/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR216EVK
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR859LXC
encode release date: 2019-08-01
lab: Bradley Bernstein, Broad
library encode accession: ENCLB602OAG
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (51 year) uterus tissue

value: uterus

value: adult

value: 51 year

value: ENCBS443NGH at ENCODE; https://www.encodeproject.org/ENCBS443NGH/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: Histone ChIP-seq from esophagus muscularis mucosa (ENCLB309WVE)

description:
https://www.encodeproject.org/experiments/ENCSR403PEI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR403PEI
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR545WFH
encode release date: 2019-09-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB309WVE
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (51 year) esophagus muscularis mucosa tissue

value: esophagus muscularis mucosa

value: EnTEX:Esophagus - Muscularis

value: female

value: ENCBS677JLV at ENCODE; https://www.encodeproject.org/ENCBS677JLV/


title: Histone ChIP-seq from esophagus muscularis mucosa (ENCLB589PAA)

description:
https://www.encodeproject.org/experiments/ENCSR403PEI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR403PEI
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR545WFH
encode release date: 2019-09-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB589PAA
fragmentation methods: sonication (generic)
size range: 200-600

value: Bradley Bernstein, Broad

value: ENCBS955ZON at ENCODE; https://www.encodeproject.org/ENCBS955ZON/


title: Histone ChIP-seq from skin epidermis (ENCLB093LZJ)

description:
https://www.encodeproject.org/experiments/ENCSR235KRX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq of keratinocyte squamous cell carcinoma male adult (75 years). Note that tissue excised from donor is cancerous.
experiment encode accession: ENCSR235KRX
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR071DPR
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB093LZJ
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens male adult (75 years) skin epidermis tissue with squamous cell carcinoma

value: skin epidermis

value: SCC tumor tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari.

value: male

value: keratinocyte carcinoma surgical removal

value: 75 year

value: Maryam M. Asgari, MD, MPH

value: ENCBS073GVF at ENCODE; https://www.encodeproject.org/ENCBS073GVF/

value: Derived from ENCODE donor ENCDO317WFZ; https://www.encodeproject.org/ENCDO317WFZ/


title: Control ChIP-seq from skin epidermis (ENCLB894YVF)

description:
https://www.encodeproject.org/experiments/ENCSR247FUH/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq of skin epidermis male adult (77 years). Note that tissue excised from donor is adjacent epidermis from Mohs cancer removal procedure.
experiment encode accession: ENCSR247FUH
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB894YVF
size range: 200-600

source_name: Homo sapiens male adult (77 years) skin epidermis tissue

value: tissue

value: tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari. These cells contain no tumor.

value: adult

value: 77 year

value: ENCBS488CYF at ENCODE; https://www.encodeproject.org/ENCBS488CYF/

value: Derived from ENCODE donor ENCDO739SDJ; https://www.encodeproject.org/ENCDO739SDJ/


title: Histone ChIP-seq from spleen (ENCLB555DNV)

description:
https://www.encodeproject.org/experiments/ENCSR593INW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR593INW
assay title: Histone ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR803JPO
encode release date: 2019-09-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB555DNV
fragmentation methods: sonication (generic)
size range: 200-600

value: spleen

value: 54 year

value: Kristin Ardlie

value: ENCBS223WIE at ENCODE; https://www.encodeproject.org/ENCBS223WIE/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: Histone ChIP-seq from pancreas (ENCLB535XEU)

description:
https://www.encodeproject.org/experiments/ENCSR912QMS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on pancreas female adult (41 years)
experiment encode accession: ENCSR912QMS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR462ZQL
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB535XEU
fragmentation methods: sonication (generic)
size range: 200-600

value: pancreas

value: female

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS212NYF at ENCODE; https://www.encodeproject.org/ENCBS212NYF/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Histone ChIP-seq from spleen (ENCLB867UVL)

description:
https://www.encodeproject.org/experiments/ENCSR907JPV/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on spleen male adult (26 years)
experiment encode accession: ENCSR907JPV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR200QAA
encode release date: 2020-09-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB867UVL
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens male adult (26 years) spleen tissue, preserved by flash-freezing

value: tissue

value: male

value: adult

value: 26 year

value: ENCBS498SQU at ENCODE; https://www.encodeproject.org/ENCBS498SQU/

value: Derived from ENCODE donor ENCDO221IPH; https://www.encodeproject.org/ENCDO221IPH/


title: Histone ChIP-seq from skin epidermis (ENCLB927EIO)

description:
https://www.encodeproject.org/experiments/ENCSR214UZE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq of skin epidermis female adult (71 years). Note that tissue excised from donor is adjacent epidermis from Mohs cancer removal procedure.
experiment encode accession: ENCSR214UZE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR126UEY
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB927EIO
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (71 years) skin epidermis tissue

value: skin epidermis

value: tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari. These cells contain no tumor.

value: keratinocyte carcinoma surgical removal

value: 71 year

value: Bradley Bernstein, Broad

value: Maryam M. Asgari, MD, MPH

value: ENCBS823ZBL at ENCODE; https://www.encodeproject.org/ENCBS823ZBL/

value: Derived from ENCODE donor ENCDO588YPS; https://www.encodeproject.org/ENCDO588YPS/


title: Histone ChIP-seq from uterus (ENCLB887JKG)

description:
https://www.encodeproject.org/experiments/ENCSR216EVK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR216EVK
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR859LXC
encode release date: 2019-08-01
lab: Bradley Bernstein, Broad
library encode accession: ENCLB887JKG
fragmentation methods: sonication (generic)
size range: 200-600

value: uterus

value: female

value: 51 year

value: ENCBS443NGH at ENCODE; https://www.encodeproject.org/ENCBS443NGH/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: Histone ChIP-seq from lower lobe of left lung (ENCLB406JUD)

description:
https://www.encodeproject.org/experiments/ENCSR261ZUW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on lower lobe of left lung male adult (60 years)
experiment encode accession: ENCSR261ZUW
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR089ZLR
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB406JUD
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens male adult (60 years) lower lobe of left lung tissue, preserved by flash-freezing

value: lower lobe of left lung

value: tissue

value: male

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: adult

value: 60 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS105KGA at ENCODE; https://www.encodeproject.org/ENCBS105KGA/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: Histone ChIP-seq from skin epidermis (ENCLB783LKL)

description:
https://www.encodeproject.org/experiments/ENCSR207ABA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq of keratinocyte basal cell carcinoma male adult (67 years). Note that tissue excised from donor is cancerous.
experiment encode accession: ENCSR207ABA
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR438NOO
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB783LKL
fragmentation methods: none
size range: 200-600

value: skin epidermis

value: BCC tumor tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari.

value: keratinocyte carcinoma surgical removal

value: 67 year

value: Bradley Bernstein, Broad

value: Maryam M. Asgari, MD, MPH

value: ENCBS786EKF at ENCODE; https://www.encodeproject.org/ENCBS786EKF/

value: Derived from ENCODE donor ENCDO128KBJ; https://www.encodeproject.org/ENCDO128KBJ/


title: Histone ChIP-seq from pancreas (ENCLB808OBL)

description:
https://www.encodeproject.org/experiments/ENCSR245GEV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on pancreas female adult (61 years)
experiment encode accession: ENCSR245GEV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR130HAG
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB808OBL
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (61 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: tissue

value: female

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: 61 year

value: ENCBS297KRV at ENCODE; https://www.encodeproject.org/ENCBS297KRV/

value: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/


title: Histone ChIP-seq from left lung (ENCLB095PXQ)

description:
https://www.encodeproject.org/experiments/ENCSR906YQO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on left lung male adult (40 years)
experiment encode accession: ENCSR906YQO
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR936CZX
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB095PXQ
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens male adult (40 years) left lung tissue, preserved by flash-freezing

value: left lung

value: male

value: DM:no; HTN:yes; CAD:no

value: adult

value: 40 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS628ZUJ at ENCODE; https://www.encodeproject.org/ENCBS628ZUJ/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: Histone ChIP-seq from skin epidermis (ENCLB924RGX)

description:
https://www.encodeproject.org/experiments/ENCSR194KGO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq of skin epidermis female adult (66 years). Note that tissue excised from donor is adjacent epidermis from Mohs cancer removal procedure.
experiment encode accession: ENCSR194KGO
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR033XKQ
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB924RGX
fragmentation methods: none
size range: 200-600

source_name: Homo sapiens female adult (66 years) skin epidermis tissue

value: skin epidermis

value: tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari. These cells contain no tumor.

value: keratinocyte carcinoma surgical removal

value: 66 year

value: Bradley Bernstein, Broad

value: Maryam M. Asgari, MD, MPH

value: ENCBS826CAW at ENCODE; https://www.encodeproject.org/ENCBS826CAW/

value: Derived from ENCODE donor ENCDO017WNO; https://www.encodeproject.org/ENCDO017WNO/


title: Histone ChIP-seq from skin epidermis (ENCLB767JEN)

description:
https://www.encodeproject.org/experiments/ENCSR869TDT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq of keratinocyte squamous cell carcinoma female adult (80 years). Note that tissue excised from donor is cancerous.
experiment encode accession: ENCSR869TDT
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR966IGL
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB767JEN
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (80 years) skin epidermis tissue with squamous cell carcinoma

value: tissue

value: SCC tumor tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari.

value: female

value: 80 year

value: ENCBS741KVA at ENCODE; https://www.encodeproject.org/ENCBS741KVA/

value: Derived from ENCODE donor ENCDO856JFL; https://www.encodeproject.org/ENCDO856JFL/


title: Histone ChIP-seq from skin epidermis (ENCLB683RPV)

description:
https://www.encodeproject.org/experiments/ENCSR397NQK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq of keratinocyte basal cell carcinoma male adult (65 years). Note that tissue excised from donor is cancerous.
experiment encode accession: ENCSR397NQK
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR785LQK
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB683RPV
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens male adult (65 years) skin epidermis tissue with basal cell carcinoma

value: BCC tumor tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari.

value: male

value: keratinocyte carcinoma surgical removal. transplant recipient, iatrogenically immunosuppressed

value: adult

value: 65 year

value: ENCBS721DMB at ENCODE; https://www.encodeproject.org/ENCBS721DMB/

value: Derived from ENCODE donor ENCDO180HAI; https://www.encodeproject.org/ENCDO180HAI/


title: Histone ChIP-seq from left lung (ENCLB627PWQ)

description:
https://www.encodeproject.org/experiments/ENCSR906YQO/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 ChIP-seq on left lung male adult (40 years)
experiment encode accession: ENCSR906YQO
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR936CZX
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB627PWQ
fragmentation methods: sonication (generic)
size range: 200-600

value: left lung

value: DM:no; HTN:yes; CAD:no

value: 40 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS628ZUJ at ENCODE; https://www.encodeproject.org/ENCBS628ZUJ/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: Histone ChIP-seq from heart right ventricle (ENCLB026UYH)

description:
https://www.encodeproject.org/experiments/ENCSR240GDT/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on heart right ventricle female adult (46 years)
experiment encode accession: ENCSR240GDT
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR519UXW
encode release date: 2020-09-15
lab: Bradley Bernstein, Broad
library encode accession: ENCLB026UYH
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (46 years) heart right ventricle tissue, preserved by flash-freezing

value: heart right ventricle

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: 46 year

value: ENCBS824CUX at ENCODE; https://www.encodeproject.org/ENCBS824CUX/

value: Derived from ENCODE donor ENCDO411EVD; https://www.encodeproject.org/ENCDO411EVD/


title: Histone ChIP-seq from skin epidermis (ENCLB616AKF)

description:
https://www.encodeproject.org/experiments/ENCSR156MYA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq of skin epidermis male adult (65 years). Note that tissue excised from donor is adjacent epidermis from Mohs cancer removal procedure.
experiment encode accession: ENCSR156MYA
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR988CHU
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB616AKF
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens male adult (65 years) skin epidermis tissue

value: skin epidermis

value: tissue collected during keratinocyte carcinoma removal surgery under supervision of Maryam Asgari. These cells contain no tumor.

value: male

value: keratinocyte carcinoma surgical removal. transplant recipient, iatrogenically immunosuppressed

value: adult

value: 65 year

value: Bradley Bernstein, Broad

value: Maryam M. Asgari, MD, MPH

value: ENCBS499OVL at ENCODE; https://www.encodeproject.org/ENCBS499OVL/


title: Histone ChIP-seq from heart right ventricle (ENCLB406WMN)

description:
https://www.encodeproject.org/experiments/ENCSR240GDT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on heart right ventricle female adult (46 years)
experiment encode accession: ENCSR240GDT
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR519UXW
encode release date: 2020-09-15
lab: Bradley Bernstein, Broad
library encode accession: ENCLB406WMN
fragmentation methods: sonication (generic)
size range: 200-600

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD