title: iPSC neuron post-capture [WTCHG_422059_204253]


title: nxid10046: WT_Intestinal_organoids_IFNg_2_days_treatment_rep_1

status: Public on Mar 10 2021

type: SRA

city: Lausanne

first: Maxim

last: Norkin

address: SV 2521 (Bâtiment SV)  Station 19

department: SV

country: Switzerland

institute: EPFL

library_source: transcriptomic

data_processing:
Sequencing files were demultiplexed with bcl2fastq software (Illumina).
UMI-tools-0.5.3. software was used for counting uniqe UMIs. bowtie-1.2.2 was used to allign the reads with the parameters --threads 4 -v 2 -m 10 -a.
samtools-1.2.7 was used for sorting and indexing the alignments with parameters sort -k 3,3 -k 4,4n.
cufflinks-2.2.1 was used to assemble the transcripts and estimate their abundances with the parameters --no-length-correction -g.
Genome_build: mm10-based, custom for 206 genes
Supplementary_files_format_and_content: Raw counts text file

molecule: polyA RNA

organism: Mus musculus

source_name: Intestinal organoids

growth_protocol: Organoids were cultured in 10 cm dishes in EGF, Noggin, and R-Spondin (ENR)-containing media. For the screening, they were splitted and seeded in 96-well plates at around 20-30 organoids per well density.

extract_protocol:
mRNA was isolated with The New England Biolabs (NEB) Magnetic mRNA Isolation Kit (S1550S) and the isolation was performed according to the manufacturer’s protocol, in 96-well plate format.
Custom, TORNADO-seq, PCR-amplification based, includes: 1) mRNA isolation, 2) gene specific RT reaction with 206 primers, 3) 1st stage PCR with common rev primer and the mixture of 206 gene specific FW primers, 4) 2nd stage PCR with two indexing primers. Clean-up procedures were carried out between 2 and 3, 3 and 4 steps using AMPure XP beads. Amplified library was cleaned up on 2% agarose gel twice.

treatment_protocol: Organoids were treated with 320 drugs from FDA-approved drug library. Treatments started 1-2 days after splitting and took 2 (1) days.

tag: strain

tag: tissue

value: Intestine

tag: genotype

value: WT

tag: drug treatment

value: IFNg

tag: treatment, days

tag: plate number


title: nxid10286: WT_Intestinal_organoids_IFNg_2_days_treatment_rep_1


title: iPSC neuron post-capture [WTCHG_422059_204252]

city: Oxford

first: Alexandra

last: Pokhilko

address: John Radcliffe Hospital, Headington

department: Nuffield Department of Clinical Neurosciences

country: United Kingdom

institute: University of Oxford

data_processing:
RNA-seq data were mapped to the hg38 assembly via STAR version 2.4.2
ribosomal rRNA was removed with the SortMeRNA version 2.1
read quality check with FastQC Version 0.10.1
read alignment quatification into gene counts with featureCount of Subread version 1.4.0
We excluded libraries with less than 2000 expressed genes; low complexity, where the % of 200 most expressed features represented more than 50% of total number of counts
Genome_build: hg38
Supplementary_files_format_and_content: Supplementary files of raw counts are tab-delimited text files

molecule: total RNA

organism: Homo sapiens

source_name: Dermal fibroblasts differentiated into iPS cells

growth_protocol: the growth protocol is described in Volpato et.al, Stem Cell Rep. 2018, p.897-911. PMID: 30245212. Briefly, confluent monolayer iPSCs were induced by dual-SMAD inhibition for 12 days followed by three weeks of progenitor expansion and differentiation. Independent inductions were seeded into 12-well culture dishes at a final plating density of 8.5 x 104 cells /cm2. Samples were collected at day 55 after final plating

extract_protocol:
RNeasy Mini Kits (QIAGEN) targeted enrichment with Roche NimbleGen SeqCap
Libraries were prepared following the Smart-Seq2 protocol. Libraries were pooled in 288- or 384-plexes and each pool sequenced on 1 lane of HiSeq4000 at 75bp paired end

treatment_protocol: non

tag: library

value: post-capture NG

tag: cell type

value: iPSC-derived neuron

tag: cell line

tag: lab

value: E

tag: batch


title: iPSC neuron post-capture [WTCHG_422059_204251]


title: nxid8607: WT_Intestinal_organoids_IFNg_2_days_treatment_rep_1


title: iPSC neuron post-capture [WTCHG_422059_204250]


title: nxid8619: WT_Intestinal_organoids_IFNg_2_days_treatment_rep_2


title: nxid10058: WT_Intestinal_organoids_IFNg_2_days_treatment_rep_2


title: nxid6925: WT_Intestinal_organoids_IFNg_2_days_treatment_rep_1


title: iPSC neuron post-capture [WTCHG_422059_203280]

value: D


title: iPSC neuron post-capture [WTCHG_422059_203279]


title: nxid8859: WT_Intestinal_organoids_IFNg_2_days_treatment_rep_2


title: iPSC neuron post-capture [WTCHG_422059_204249]


title: iPSC neuron post-capture [WTCHG_422059_203276]


title: iPSC neuron post-capture [WTCHG_422059_203278]


title: iPSC neuron post-capture [WTCHG_422059_203277]


title: nxid10478: WT_Intestinal_organoids_IFNg_2_days_treatment_rep_1


title: nxid12759: WT_Intestinal_organoids_Ifenprodil_2_days_treatment_rep_2

value: Ifenprodil


title: nxid12712: WT_Intestinal_organoids_Ifenprodil_2_days_treatment_rep_1


title: nxid12506: AKP_Intestinal_organoids_Ifenprodil_2_days_treatment_rep_2

value: AKP


title: nxid12480: AKP_Intestinal_organoids_Ifenprodil_2_days_treatment_rep_1


title: iPSC neuron post-capture [WTCHG_422059_203275]


title: nxid6937: WT_Intestinal_organoids_IFNg_2_days_treatment_rep_2


title: iPSC neuron post-capture [WTCHG_422059_204255]


title: iPSC neuron post-capture [WTCHG_422059_203274]


title: iPSC neuron post-capture [WTCHG_422059_203273]


title: nxid12771: WT_Intestinal_organoids_Ifenprodil_2_days_treatment_rep_3


title: nxid10535: WT_Intestinal_organoids_Idebenone_2_days_treatment_rep_4

value: Idebenone


title: iPSC neuron post-capture [WTCHG_422059_203256]


title: iPSC neuron post-capture [WTCHG_422059_203255]


title: iPSC neuron post-capture [WTCHG_422059_203254]


title: nxid12437: AKP_Intestinal_organoids_Ifenprodil_1_days_treatment_rep_1


title: nxid6742: WT_Intestinal_organoids_Idebenone_2_days_treatment_rep_1


title: iPSC neuron post-capture [WTCHG_422059_203252]


title: nxid8664: WT_Intestinal_organoids_Idebenone_2_days_treatment_rep_2


title: nxid10343: WT_Intestinal_organoids_Idebenone_2_days_treatment_rep_3


title: nxid10523: WT_Intestinal_organoids_Ibandronate_2_days_treatment_rep_4

value: Ibandronate


title: iPSC neuron post-capture [WTCHG_422059_203251]


title: nxid10331: WT_Intestinal_organoids_Ibandronate_2_days_treatment_rep_3


title: iPSC neuron post-capture [WTCHG_422059_203253]


title: nxid8652: WT_Intestinal_organoids_Ibandronate_2_days_treatment_rep_2


title: nxid6730: WT_Intestinal_organoids_Ibandronate_2_days_treatment_rep_1


title: nxid12738: AKP_Intestinal_organoids_Hydroxyzine_2_days_treatment_rep_1

value: Hydroxyzine


title: nxid10512: WT_Intestinal_organoids_Hydroxyzine_2_days_treatment_rep_4


title: iPSC neuron post-capture [WTCHG_422059_203250]


title: iPSC neuron post-capture [WTCHG_422059_203249]


title: iPSC neuron post-capture [WTCHG_422059_202280]


title: nxid10320: WT_Intestinal_organoids_Hydroxyzine_2_days_treatment_rep_3


title: iPSC neuron post-capture [WTCHG_422059_202277]


title: iPSC neuron post-capture [WTCHG_422059_202276]


title: nxid6719: WT_Intestinal_organoids_Hydroxyzine_2_days_treatment_rep_1


title: nxid10173: WT_Intestinal_organoids_Hydrocortisone_2_days_treatment_rep_2

value: Hydrocortisone


title: iPSC neuron post-capture [WTCHG_422059_202274]


title: nxid8641: WT_Intestinal_organoids_Hydroxyzine_2_days_treatment_rep_2


title: iPSC neuron post-capture [WTCHG_422059_202278]


title: iPSC neuron post-capture [WTCHG_422059_202275]


title: iPSC neuron post-capture [WTCHG_422059_202279]


title: nxid9692: WT_Intestinal_organoids_Hydralazine_2_days_treatment_rep_3

value: Hydralazine


title: nxid8109: WT_Intestinal_organoids_Hydralazine_2_days_treatment_rep_1


title: nxid8494: WT_Intestinal_organoids_Hydrocortisone_2_days_treatment_rep_1


title: iPSC neuron post-capture [WTCHG_422059_202273]


title: iPSC neuron post-capture [WTCHG_422059_202256]


title: iPSC neuron post-capture [WTCHG_422059_202255]


title: iPSC neuron post-capture [WTCHG_422059_202254]


title: nxid10132: WT_Intestinal_organoids_Homochlorcyclizine_2_days_treatment_rep_2

value: Homochlorcyclizine


title: iPSC neuron post-capture [WTCHG_422059_202252]


title: nxid10177: WT_Intestinal_organoids_Homatropine_2_days_treatment_rep_2

value: Homatropine


title: nxid10176: WT_Intestinal_organoids_Hexetidine_2_days_treatment_rep_2

value: Hexetidine


title: nxid8498: WT_Intestinal_organoids_Homatropine_2_days_treatment_rep_1

value: Intestine


title: iPSC neuron post-capture [WTCHG_422059_202251]


title: iPSC neuron post-capture [WTCHG_422059_202249]


title: nxid10088: WT_Intestinal_organoids_Hemicholinium_2_days_treatment_rep_2

value: WT

value: Hemicholinium


title: iPSC neuron post-capture [WTCHG_422059_201280]

value: post-capture NG


title: nxid8497: WT_Intestinal_organoids_Hexetidine_2_days_treatment_rep_1


title: nxid8409: WT_Intestinal_organoids_Hemicholinium_2_days_treatment_rep_1


title: nxid8876: WT_Intestinal_organoids_Hydralazine_2_days_treatment_rep_2


title: iPSC neuron post-capture [WTCHG_422059_201278]

value: iPSC-derived neuron


title: iPSC neuron post-capture [WTCHG_422059_201279]


title: nxid10481: WT_Intestinal_organoids_Halofantrine_2_days_treatment_rep_4

value: Halofantrine


title: nxid8610: WT_Intestinal_organoids_Halofantrine_2_days_treatment_rep_2


title: iPSC neuron post-capture [WTCHG_422059_201277]

value: D


title: iPSC neuron post-capture [WTCHG_422059_201274]


title: nxid6688: WT_Intestinal_organoids_Halofantrine_2_days_treatment_rep_1


title: iPSC neuron post-capture [WTCHG_422059_201275]


title: nxid10652: WT_Intestinal_organoids_Hydralazine_2_days_treatment_rep_4


title: nxid8443: WT_Intestinal_organoids_Guanfacine_2_days_treatment_rep_1

value: Guanfacine


title: iPSC neuron post-capture [WTCHG_422059_201273]


title: nxid10169: WT_Intestinal_organoids_Guanethidine_2_days_treatment_rep_2

value: Guanethidine


title: iPSC neuron post-capture [WTCHG_422059_201256]

value: E


title: nxid8453: WT_Intestinal_organoids_Homochlorcyclizine_2_days_treatment_rep_1


title: nxid8490: WT_Intestinal_organoids_Guanethidine_2_days_treatment_rep_1


title: iPSC neuron post-capture [WTCHG_422059_202250]


title: iPSC neuron post-capture [WTCHG_422059_201254]


title: nxid8771: WT_Intestinal_organoids_Guaiacol_2_days_treatment_rep_2

value: Guaiacol


title: iPSC neuron post-capture [WTCHG_422059_201253]


title: nxid10289: WT_Intestinal_organoids_Halofantrine_2_days_treatment_rep_3


title: nxid10066: WT_Intestinal_organoids_Guaiacol_2_days_treatment_rep_3


title: iPSC neuron post-capture [WTCHG_422059_201276]


title: nxid9673: WT_Intestinal_organoids_Griseofulvin_2_days_treatment_rep_3

value: Griseofulvin


title: nxid6945: WT_Intestinal_organoids_Guaiacol_2_days_treatment_rep_1


title: nxid10633: WT_Intestinal_organoids_Griseofulvin_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_256278]

value: pre-capture NG


title: nxid8857: WT_Intestinal_organoids_Griseofulvin_2_days_treatment_rep_2


title: iPSC neuron post-capture [WTCHG_422059_201249]


title: nxid10305: WT_Intestinal_organoids_Granisetron_2_days_treatment_rep_3

value: Granisetron


title: iPSC neuron post-capture [WTCHG_422059_201250]


title: nxid8090: WT_Intestinal_organoids_Griseofulvin_2_days_treatment_rep_1


title: iPSC neuron post-capture [WTCHG_422059_201252]


title: nxid10122: WT_Intestinal_organoids_Guanfacine_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_256279]


title: iPSC neuron pre-capture [WTCHG_255094_256277]


title: nxid6704: WT_Intestinal_organoids_Granisetron_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_256275]


title: iPSC neuron pre-capture [WTCHG_255094_256274]


title: iPSC neuron post-capture [WTCHG_422059_201251]


title: nxid8748: WT_Intestinal_organoids_Glipizide_2_days_treatment_rep_2

value: Glipizide


title: iPSC neuron pre-capture [WTCHG_255094_256273]


title: nxid6922: WT_Intestinal_organoids_Glipizide_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_256255]


title: nxid10497: WT_Intestinal_organoids_Granisetron_2_days_treatment_rep_4


title: nxid10043: WT_Intestinal_organoids_Glipizide_2_days_treatment_rep_3


title: nxid8025: WT_Intestinal_organoids_Gentamicine_2_days_treatment_rep_1

value: Gentamicine


title: iPSC neuron pre-capture [WTCHG_255094_256253]


title: iPSC neuron pre-capture [WTCHG_255094_256254]


title: nxid8626: WT_Intestinal_organoids_Granisetron_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_256252]


title: iPSC neuron pre-capture [WTCHG_255094_256276]


title: iPSC neuron pre-capture [WTCHG_255094_256251]


title: nxid9608: WT_Intestinal_organoids_Gentamicine_2_days_treatment_rep_3


title: nxid10528: WT_Intestinal_organoids_Gabexate_2_days_treatment_rep_4

value: Gabexate


title: nxid12765: AKP_Intestinal_organoids_Gemcitabine_2_days_treatment_rep_1

value: Intestine

value: AKP

value: Gemcitabine


title: iPSC neuron pre-capture [WTCHG_255094_255278]


title: iPSC neuron pre-capture [WTCHG_255094_255279]


title: nxid8792: WT_Intestinal_organoids_Gentamicine_2_days_treatment_rep_2

value: WT


title: iPSC neuron pre-capture [WTCHG_255094_256250]

value: iPSC-derived neuron


title: iPSC neuron pre-capture [WTCHG_255094_256249]


title: nxid10054: WT_Intestinal_organoids_Gemcitabine_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_255277]


title: nxid10336: WT_Intestinal_organoids_Gabexate_2_days_treatment_rep_3


title: nxid6735: WT_Intestinal_organoids_Gabexate_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_255276]


title: nxid8093: WT_Intestinal_organoids_Fulvestrant_2_days_treatment_rep_1

value: Fulvestrant


title: iPSC neuron pre-capture [WTCHG_255094_255273]

value: D


title: iPSC neuron pre-capture [WTCHG_255094_255274]


title: iPSC neuron pre-capture [WTCHG_255094_255275]


title: iPSC neuron pre-capture [WTCHG_255094_255255]


title: nxid6933: WT_Intestinal_organoids_Gemcitabine_2_days_treatment_rep_1


title: nxid8861: WT_Intestinal_organoids_Fulvestrant_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_255253]


title: nxid10636: WT_Intestinal_organoids_Fulvestrant_2_days_treatment_rep_4


title: nxid8081: WT_Intestinal_organoids_Formoterol_2_days_treatment_rep_1

value: Formoterol


title: iPSC neuron pre-capture [WTCHG_255094_255254]


title: nxid9664: WT_Intestinal_organoids_Formoterol_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_255251]


title: iPSC neuron pre-capture [WTCHG_255094_255250]


title: nxid8059: WT_Intestinal_organoids_Fomepizole_2_days_treatment_rep_1

value: Fomepizole


title: iPSC neuron pre-capture [WTCHG_255094_255252]

value: E


title: iPSC neuron pre-capture [WTCHG_255094_254280]


title: nxid8849: WT_Intestinal_organoids_Formoterol_2_days_treatment_rep_2


title: nxid9642: WT_Intestinal_organoids_Fomepizole_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_255249]


title: nxid8657: WT_Intestinal_organoids_Gabexate_2_days_treatment_rep_2


title: nxid8827: WT_Intestinal_organoids_Fomepizole_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_254278]


title: nxid9676: WT_Intestinal_organoids_Fulvestrant_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_254277]


title: nxid12531: WT_Intestinal_organoids_Fluvastatin_2_days_treatment_rep_1

value: Fluvastatin


title: nxid12589: WT_Intestinal_organoids_Fluvastatin_2_days_treatment_rep_2


title: nxid12542: WT_Intestinal_organoids_Fluphenazine_2_days_treatment_rep_1

value: Fluphenazine


title: iPSC neuron pre-capture [WTCHG_255094_254276]

value: pre-capture NG


title: iPSC neuron pre-capture [WTCHG_255094_254275]


title: iPSC neuron pre-capture [WTCHG_255094_254274]


title: nxid12600: WT_Intestinal_organoids_Fluphenazine_2_days_treatment_rep_2


title: nxid10005: WT_Intestinal_organoids_fluorouracil_2_days_treatment_rep_3

value: fluorouracil


title: nxid10624: WT_Intestinal_organoids_Formoterol_2_days_treatment_rep_4


title: nxid8710: WT_Intestinal_organoids_fluorouracil_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_254273]


title: iPSC neuron pre-capture [WTCHG_255094_254255]


title: nxid10120: WT_Intestinal_organoids_Fludrocortisone_2_days_treatment_rep_2

value: Fludrocortisone


title: nxid8441: WT_Intestinal_organoids_Fludrocortisone_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_254253]


title: iPSC neuron pre-capture [WTCHG_255094_254279]


title: nxid8057: WT_Intestinal_organoids_Fluconazole_2_days_treatment_rep_1

value: Fluconazole


title: iPSC neuron pre-capture [WTCHG_255094_254252]


title: nxid9640: WT_Intestinal_organoids_Fluconazole_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_254251]


title: nxid8825: WT_Intestinal_organoids_Fluconazole_2_days_treatment_rep_2


title: nxid6884: WT_Intestinal_organoids_fluorouracil_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_254250]


title: iPSC neuron pre-capture [WTCHG_255094_254254]


title: iPSC neuron pre-capture [WTCHG_255094_254256]


title: nxid10600: WT_Intestinal_organoids_Fluconazole_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_254249]


title: nxid12418: AKP_Intestinal_organoids_Floxuridine_1_days_treatment_rep_1

value: Floxuridine


title: nxid10602: WT_Intestinal_organoids_Fomepizole_2_days_treatment_rep_4

value: Intestine


title: iPSC neuron pre-capture [WTCHG_255094_253280]


title: iPSC neuron pre-capture [WTCHG_255094_253279]


title: iPSC neuron pre-capture [WTCHG_255094_253278]


title: nxid8045: WT_Intestinal_organoids_Floxuridine_2_days_treatment_rep_1


title: nxid9628: WT_Intestinal_organoids_Floxuridine_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_253277]


title: nxid8813: WT_Intestinal_organoids_Floxuridine_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_253276]


title: nxid10588: WT_Intestinal_organoids_Floxuridine_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_253275]


title: nxid10507: WT_Intestinal_organoids_Fexofenadine_2_days_treatment_rep_4

value: Fexofenadine


title: iPSC neuron pre-capture [WTCHG_255094_253274]


title: iPSC neuron pre-capture [WTCHG_255094_253256]


title: iPSC neuron pre-capture [WTCHG_255094_253273]


title: iPSC neuron pre-capture [WTCHG_255094_253254]


title: iPSC neuron pre-capture [WTCHG_255094_253255]


title: iPSC neuron pre-capture [WTCHG_255094_253252]


title: iPSC neuron pre-capture [WTCHG_255094_253253]


title: nxid6714: WT_Intestinal_organoids_Fexofenadine_2_days_treatment_rep_1


title: nxid8699: WT_Intestinal_organoids_Fentiazac_2_days_treatment_rep_2

value: Fentiazac


title: nxid6873: WT_Intestinal_organoids_Fentiazac_2_days_treatment_rep_1

value: WT


title: nxid9994: WT_Intestinal_organoids_Fentiazac_2_days_treatment_rep_3


title: nxid8083: WT_Intestinal_organoids_Fenipentol_2_days_treatment_rep_1

value: Fenipentol


title: nxid12452: AKP_Intestinal_organoids_Floxuridine_2_days_treatment_rep_1

value: AKP


title: iPSC neuron pre-capture [WTCHG_255094_253250]

value: iPSC-derived neuron


title: nxid12486: AKP_Intestinal_organoids_Floxuridine_2_days_treatment_rep_2


title: nxid8851: WT_Intestinal_organoids_Fenipentol_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_253249]


title: iPSC neuron pre-capture [WTCHG_255094_252279]

value: D


title: iPSC neuron pre-capture [WTCHG_255094_252280]


title: nxid10626: WT_Intestinal_organoids_Fenipentol_2_days_treatment_rep_4


title: nxid8111: WT_Intestinal_organoids_Ezetimibe_2_days_treatment_rep_1

value: Ezetimibe


title: nxid10315: WT_Intestinal_organoids_Fexofenadine_2_days_treatment_rep_3


title: nxid9694: WT_Intestinal_organoids_Ezetimibe_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_252278]


title: nxid8636: WT_Intestinal_organoids_Fexofenadine_2_days_treatment_rep_2


title: nxid8878: WT_Intestinal_organoids_Ezetimibe_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_252276]


title: iPSC neuron pre-capture [WTCHG_255094_252277]


title: nxid8033: WT_Intestinal_organoids_Exemestane_2_days_treatment_rep_1

value: Exemestane


title: nxid10654: WT_Intestinal_organoids_Ezetimibe_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_253251]

value: E


title: iPSC neuron pre-capture [WTCHG_255094_252275]


title: iPSC neuron pre-capture [WTCHG_255094_252274]


title: iPSC neuron pre-capture [WTCHG_255094_252273]


title: iPSC neuron pre-capture [WTCHG_255094_252256]


title: nxid9666: WT_Intestinal_organoids_Fenipentol_2_days_treatment_rep_3


title: nxid8021: WT_Intestinal_organoids_Etretinate_2_days_treatment_rep_1

value: Etretinate


title: nxid10576: WT_Intestinal_organoids_Exemestane_2_days_treatment_rep_4


title: nxid8801: WT_Intestinal_organoids_Exemestane_2_days_treatment_rep_2


title: nxid8789: WT_Intestinal_organoids_Etretinate_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_252254]

value: pre-capture NG


title: iPSC neuron pre-capture [WTCHG_255094_252253]


title: iPSC neuron pre-capture [WTCHG_255094_252255]


title: nxid10564: WT_Intestinal_organoids_Etretinate_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_252252]


title: iPSC neuron pre-capture [WTCHG_255094_252250]


title: nxid8062: WT_Intestinal_organoids_Etofylline_2_days_treatment_rep_1

value: Etofylline


title: iPSC neuron pre-capture [WTCHG_255094_252251]


title: nxid8829: WT_Intestinal_organoids_Etofylline_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_251280]


title: iPSC neuron pre-capture [WTCHG_255094_251279]


title: iPSC neuron pre-capture [WTCHG_255094_251278]


title: nxid9616: WT_Intestinal_organoids_Exemestane_2_days_treatment_rep_3


title: nxid10605: WT_Intestinal_organoids_Etofylline_2_days_treatment_rep_4


title: nxid6960: WT_Intestinal_organoids_Etofenamate_2_days_treatment_rep_1

value: Etofenamate


title: iPSC neuron pre-capture [WTCHG_255094_251277]


title: nxid8786: WT_Intestinal_organoids_Etofenamate_2_days_treatment_rep_2


title: nxid10081: WT_Intestinal_organoids_Etofenamate_2_days_treatment_rep_3


title: iPSC neuron post-capture [WTCHG_422059_201255]

value: post-capture NG


title: iPSC neuron post-capture [WTCHG_422059_202253]


title: nxid8412: WT_Intestinal_organoids_Etifenin_2_days_treatment_rep_1

value: Etifenin


title: iPSC neuron pre-capture [WTCHG_255094_251276]


title: nxid10091: WT_Intestinal_organoids_Etifenin_2_days_treatment_rep_2

value: Intestine


title: nxid8852: WT_Intestinal_organoids_Ethosuximide_2_days_treatment_rep_2

value: Ethosuximide


title: iPSC neuron pre-capture [WTCHG_255094_251273]


title: nxid8085: WT_Intestinal_organoids_Ethosuximide_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_251274]


title: nxid10108: WT_Intestinal_organoids_Ethambutol_2_days_treatment_rep_2

value: Ethambutol


title: iPSC neuron pre-capture [WTCHG_255094_251256]


title: iPSC neuron pre-capture [WTCHG_255094_251275]


title: nxid10628: WT_Intestinal_organoids_Ethosuximide_2_days_treatment_rep_3

value: WT


title: nxid9645: WT_Intestinal_organoids_Etofylline_2_days_treatment_rep_3


title: nxid8429: WT_Intestinal_organoids_Ethambutol_2_days_treatment_rep_1


title: nxid10471: WT_Intestinal_organoids_Estriol_2_days_treatment_rep_4

value: Estriol


title: iPSC neuron pre-capture [WTCHG_255094_252249]


title: iPSC neuron pre-capture [WTCHG_255094_251253]


title: iPSC neuron pre-capture [WTCHG_255094_251255]


title: iPSC neuron pre-capture [WTCHG_255094_251251]


title: iPSC neuron pre-capture [WTCHG_255094_251254]


title: nxid10279: WT_Intestinal_organoids_Estriol_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_251250]


title: iPSC neuron pre-capture [WTCHG_255094_251249]


title: iPSC neuron pre-capture [WTCHG_255094_250280]


title: iPSC neuron pre-capture [WTCHG_255094_250279]


title: iPSC neuron pre-capture [WTCHG_255094_250278]


title: nxid6678: WT_Intestinal_organoids_Estriol_2_days_treatment_rep_1


title: nxid8094: WT_Intestinal_organoids_Estradiol_2_days_treatment_rep_1

value: Estradiol


title: nxid8862: WT_Intestinal_organoids_Estradiol_2_days_treatment_rep_2


title: nxid10637: WT_Intestinal_organoids_Estradiol_2_days_treatment_rep_4


title: nxid8600: WT_Intestinal_organoids_Estriol_2_days_treatment_rep_2


title: nxid10149: WT_Intestinal_organoids_Estradiol_2_days_treatment_rep_2


title: nxid9677: WT_Intestinal_organoids_Estradiol_2_days_treatment_rep_3


title: nxid8470: WT_Intestinal_organoids_Estradiol_2_days_treatment_rep_1


title: nxid10026: WT_Intestinal_organoids_Eseroline _2_days_treatment_rep_3

value: Eseroline


title: iPSC neuron pre-capture [WTCHG_255094_250276]

value: iPSC-derived neuron

value: D


title: iPSC neuron pre-capture [WTCHG_255094_250275]


title: nxid8731: WT_Intestinal_organoids_Eseroline _2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_250273]


title: nxid6905: WT_Intestinal_organoids_Eseroline _2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_250274]


title: iPSC neuron pre-capture [WTCHG_255094_250277]


title: nxid10283: WT_Intestinal_organoids_Escitalopram_2_days_treatment_rep_3

value: Escitalopram


title: iPSC neuron pre-capture [WTCHG_255094_250256]

value: E


title: iPSC neuron pre-capture [WTCHG_255094_250255]


title: iPSC neuron pre-capture [WTCHG_255094_250254]


title: iPSC neuron pre-capture [WTCHG_255094_251252]


title: iPSC neuron pre-capture [WTCHG_255094_250253]


title: nxid10475: WT_Intestinal_organoids_Escitalopram_2_days_treatment_rep_4


title: nxid6682: WT_Intestinal_organoids_Escitalopram_2_days_treatment_rep_1


title: nxid10522: WT_Intestinal_organoids_Erlotinib_2_days_treatment_rep_3

value: Erlotinib


title: nxid12774: AKP_Intestinal_organoids_Erlotinib_2_days_treatment_rep_4

value: AKP


title: iPSC neuron pre-capture [WTCHG_255094_250251]

value: pre-capture NG


title: nxid8651: WT_Intestinal_organoids_Erlotinib_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_250249]


title: nxid10330: WT_Intestinal_organoids_Erlotinib_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_250250]


title: nxid8830: WT_Intestinal_organoids_Epirubicin_2_days_treatment_rep_2

value: Epirubicin


title: iPSC neuron pre-capture [WTCHG_255094_250252]


title: iPSC neuron pre-capture [WTCHG_255094_249280]


title: iPSC neuron pre-capture [WTCHG_255094_249276]


title: iPSC neuron pre-capture [WTCHG_255094_249277]


title: nxid10606: WT_Intestinal_organoids_Epirubicin_2_days_treatment_rep_4


title: nxid8604: WT_Intestinal_organoids_Escitalopram_2_days_treatment_rep_2


title: nxid8104: WT_Intestinal_organoids_Enterocytes_2_days_treatment_rep_2

value: Enterocytes


title: iPSC neuron pre-capture [WTCHG_255094_249278]


title: nxid9675: WT_Intestinal_organoids_Enterocytes_2_days_treatment_rep_1


title: nxid8092: WT_Intestinal_organoids_Enterocytes_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_249275]


title: iPSC neuron pre-capture [WTCHG_255094_249274]


title: nxid10635: WT_Intestinal_organoids_Enterocytes_2_days_treatment_rep_1


title: nxid9646: WT_Intestinal_organoids_Epirubicin_2_days_treatment_rep_3


title: nxid9687: WT_Intestinal_organoids_Enterocytes_2_days_treatment_rep_2


title: nxid10647: WT_Intestinal_organoids_Enterocytes_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_249273]


title: nxid10107: WT_Intestinal_organoids_Enterocytes_2_days_treatment_rep_1


title: nxid10119: WT_Intestinal_organoids_Enterocytes_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_249279]


title: iPSC neuron pre-capture [WTCHG_255094_249256]


title: iPSC neuron pre-capture [WTCHG_255094_249253]


title: nxid10503: WT_Intestinal_organoids_Enterocytes_2_days_treatment_rep_2


title: nxid10491: WT_Intestinal_organoids_Enterocytes_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_249255]


title: nxid10299: WT_Intestinal_organoids_Enterocytes_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_249254]


title: iPSC neuron pre-capture [WTCHG_255094_249251]


title: iPSC neuron pre-capture [WTCHG_255094_249250]


title: nxid10311: WT_Intestinal_organoids_Enterocytes_2_days_treatment_rep_2


title: nxid8620: WT_Intestinal_organoids_Enterocytes_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_249249]


title: iPSC neuron pre-capture [WTCHG_255094_249252]


title: iPSC neuron pre-capture [WTCHG_255094_232280]


title: iPSC neuron pre-capture [WTCHG_255094_232279]


title: nxid8440: WT_Intestinal_organoids_Enterocytes_2_days_treatment_rep_2


title: nxid8632: WT_Intestinal_organoids_Enterocytes_2_days_treatment_rep_2


title: nxid8428: WT_Intestinal_organoids_Enterocytes_2_days_treatment_rep_1


title: nxid6710: WT_Intestinal_organoids_Enterocytes_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_232277]


title: nxid10069: WT_Intestinal_organoids_Entacapone_2_days_treatment_rep_3

value: Entacapone


title: iPSC neuron pre-capture [WTCHG_255094_232275]


title: nxid8774: WT_Intestinal_organoids_Entacapone_2_days_treatment_rep_2

value: Intestine


title: iPSC neuron pre-capture [WTCHG_255094_232276]


title: iPSC neuron pre-capture [WTCHG_255094_232278]


title: iPSC neuron pre-capture [WTCHG_255094_232274]


title: iPSC neuron pre-capture [WTCHG_255094_232273]


title: nxid6948: WT_Intestinal_organoids_Entacapone_2_days_treatment_rep_1


title: nxid8064: WT_Intestinal_organoids_Enrofloxacin_2_days_treatment_rep_1

value: Enrofloxacin


title: iPSC neuron pre-capture [WTCHG_255094_232256]


title: nxid8831: WT_Intestinal_organoids_Enrofloxacin_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_232255]


title: nxid9647: WT_Intestinal_organoids_Enrofloxacin_2_days_treatment_rep_3


title: nxid10607: WT_Intestinal_organoids_Enrofloxacin_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_232254]


title: iPSC neuron pre-capture [WTCHG_255094_232253]


title: nxid10057: WT_Intestinal_organoids_Efavirenz_2_days_treatment_rep_3

value: Efavirenz


title: iPSC neuron pre-capture [WTCHG_255094_232252]


title: nxid6936: WT_Intestinal_organoids_Efavirenz_2_days_treatment_rep_1

value: WT


title: nxid8823: WT_Intestinal_organoids_EECs_2_days_treatment_rep_2

value: EECs


title: nxid8835: WT_Intestinal_organoids_EECs_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_232250]


title: iPSC neuron pre-capture [WTCHG_255094_231280]


title: iPSC neuron pre-capture [WTCHG_255094_231279]


title: nxid10118: WT_Intestinal_organoids_EECs_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_232249]


title: iPSC neuron pre-capture [WTCHG_255094_231277]


title: iPSC neuron pre-capture [WTCHG_255094_231278]


title: nxid10502: WT_Intestinal_organoids_EECs_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_231276]


title: nxid10322: WT_Intestinal_organoids_EECs_2_days_treatment_rep_2


title: nxid10514: WT_Intestinal_organoids_EECs_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_231275]


title: iPSC neuron pre-capture [WTCHG_255094_231273]


title: nxid10310: WT_Intestinal_organoids_EECs_2_days_treatment_rep_1


title: nxid8631: WT_Intestinal_organoids_EECs_2_days_treatment_rep_1


title: nxid8643: WT_Intestinal_organoids_EECs_2_days_treatment_rep_2


title: nxid8451: WT_Intestinal_organoids_EECs_2_days_treatment_rep_2


title: nxid8439: WT_Intestinal_organoids_EECs_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_231256]


title: nxid6709: WT_Intestinal_organoids_EECs_2_days_treatment_rep_1


title: nxid8762: WT_Intestinal_organoids_Efavirenz_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_232251]


title: nxid10085: WT_Intestinal_organoids_Econazole_2_days_treatment_rep_2

value: Econazole


title: nxid12420: AKP_Intestinal_organoids_Econazole_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_231253]


title: iPSC neuron pre-capture [WTCHG_255094_231254]


title: iPSC neuron pre-capture [WTCHG_255094_231252]


title: nxid8406: WT_Intestinal_organoids_Econazole_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_231251]


title: nxid10125: WT_Intestinal_organoids_Doxorubicin_2_days_treatment_rep_2

value: Doxorubicin


title: iPSC neuron pre-capture [WTCHG_255094_231250]

value: iPSC-derived neuron


title: nxid12425: AKP_Intestinal_organoids_Doxorubicin_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_231274]

value: D


title: iPSC neuron pre-capture [WTCHG_255094_231249]


title: iPSC neuron pre-capture [WTCHG_255094_230280]


title: iPSC neuron pre-capture [WTCHG_255094_230279]


title: nxid10292: WT_Intestinal_organoids_Doxofylline_2_days_treatment_rep_3

value: Doxofylline


title: iPSC neuron pre-capture [WTCHG_255094_231255]

value: E


title: iPSC neuron pre-capture [WTCHG_255094_230278]


title: iPSC neuron pre-capture [WTCHG_255094_230274]


title: iPSC neuron pre-capture [WTCHG_255094_230276]


title: iPSC neuron pre-capture [WTCHG_255094_230275]


title: nxid10015: WT_Intestinal_organoids_Dorzolamide_2_days_treatment_rep_3

value: Dorzolamide


title: nxid8613: WT_Intestinal_organoids_Doxofylline_2_days_treatment_rep_2


title: nxid8720: WT_Intestinal_organoids_Dorzolamide_2_days_treatment_rep_2


title: nxid10033: WT_Intestinal_organoids_Dopamine_2_days_treatment_rep_3

value: Dopamine


title: iPSC neuron pre-capture [WTCHG_255094_230256]

value: pre-capture NG


title: nxid6894: WT_Intestinal_organoids_Dorzolamide_2_days_treatment_rep_1


title: nxid12472: AKP_Intestinal_organoids_Econazole_1_days_treatment_rep_1

value: AKP


title: iPSC neuron pre-capture [WTCHG_255094_230273]


title: nxid8446: WT_Intestinal_organoids_Doxorubicin_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_230254]


title: iPSC neuron pre-capture [WTCHG_255094_230255]


title: iPSC neuron pre-capture [WTCHG_255094_230253]


title: nxid10134: WT_Intestinal_organoids_Domperidone_2_days_treatment_rep_2

value: Domperidone


title: nxid6912: WT_Intestinal_organoids_Dopamine_2_days_treatment_rep_1


title: nxid10484: WT_Intestinal_organoids_Doxofylline_2_days_treatment_rep_4


title: nxid8755: WT_Intestinal_organoids_Dizocilpine_2_days_treatment_rep_2

value: Dizocilpine


title: iPSC neuron pre-capture [WTCHG_255094_230251]


title: iPSC neuron pre-capture [WTCHG_255094_230252]


title: iPSC neuron pre-capture [WTCHG_255094_230277]


title: nxid6691: WT_Intestinal_organoids_Doxofylline_2_days_treatment_rep_1

value: Intestine


title: nxid10050: WT_Intestinal_organoids_Dizocilpine_2_days_treatment_rep_3


title: nxid8069: WT_Intestinal_organoids_Dipyridamole_2_days_treatment_rep_1

value: Dipyridamole


title: iPSC neuron pre-capture [WTCHG_255094_230250]


title: iPSC neuron pre-capture [WTCHG_255094_230249]


title: nxid8738: WT_Intestinal_organoids_Dopamine_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_229280]


title: nxid9652: WT_Intestinal_organoids_Dipyridamole_2_days_treatment_rep_3


title: nxid6929: WT_Intestinal_organoids_Dizocilpine_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_229279]


title: nxid8837: WT_Intestinal_organoids_Dipyridamole_2_days_treatment_rep_2


title: nxid10612: WT_Intestinal_organoids_Dipyridamole_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_229278]


title: iPSC neuron pre-capture [WTCHG_255094_229276]


title: nxid8455: WT_Intestinal_organoids_Domperidone_2_days_treatment_rep_1


title: nxid8834: WT_Intestinal_organoids_Diphenidol_2_days_treatment_rep_2

value: Diphenidol


title: iPSC neuron pre-capture [WTCHG_255094_229274]


title: iPSC neuron pre-capture [WTCHG_255094_229275]


title: iPSC neuron pre-capture [WTCHG_255094_229256]


title: iPSC neuron pre-capture [WTCHG_255094_229273]


title: nxid9650: WT_Intestinal_organoids_Diphenidol_2_days_treatment_rep_3

value: WT


title: nxid10610: WT_Intestinal_organoids_Diphenidol_2_days_treatment_rep_4


title: nxid8095: WT_Intestinal_organoids_Diosmin_2_days_treatment_rep_1

value: Diosmin


title: iPSC neuron pre-capture [WTCHG_255094_229254]


title: nxid9678: WT_Intestinal_organoids_Diosmin_2_days_treatment_rep_3


title: nxid10638: WT_Intestinal_organoids_Diosmin_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_229255]


title: nxid8863: WT_Intestinal_organoids_Diosmin_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_229253]


title: nxid8071: WT_Intestinal_organoids_Dihydroergotamine_2_days_treatment_rep_1

value: Dihydroergotamine


title: nxid8839: WT_Intestinal_organoids_Dihydroergotamine_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_229251]


title: nxid8067: WT_Intestinal_organoids_Diphenidol_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_229249]


title: nxid10113: WT_Intestinal_organoids_Digitoxigenin_2_days_treatment_rep_2

value: Digitoxigenin


title: iPSC neuron pre-capture [WTCHG_255094_229252]

value: iPSC-derived neuron


title: iPSC neuron pre-capture [WTCHG_255094_228279]

value: D


title: iPSC neuron pre-capture [WTCHG_255094_229250]


title: iPSC neuron pre-capture [WTCHG_255094_229277]


title: nxid8434: WT_Intestinal_organoids_Digitoxigenin_2_days_treatment_rep_1


title: nxid10126: WT_Intestinal_organoids_Dicyclomine_2_days_treatment_rep_2

value: Dicyclomine


title: nxid8447: WT_Intestinal_organoids_Dicyclomine_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_228277]


title: iPSC neuron pre-capture [WTCHG_255094_228276]


title: nxid8726: WT_Intestinal_organoids_Dibenzepine_2_days_treatment_rep_2

value: Dibenzepine


title: iPSC neuron pre-capture [WTCHG_255094_228278]


title: iPSC neuron pre-capture [WTCHG_255094_228275]


title: nxid10021: WT_Intestinal_organoids_Dibenzepine_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_228274]


title: nxid6900: WT_Intestinal_organoids_Dibenzepine_2_days_treatment_rep_1


title: nxid9654: WT_Intestinal_organoids_Dihydroergotamine_2_days_treatment_rep_3


title: nxid8724: WT_Intestinal_organoids_Dexamethasone_2_days_treatment_rep_2

value: Dexamethasone


title: nxid10614: WT_Intestinal_organoids_Dihydroergotamine_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_228255]

value: E


title: nxid10019: WT_Intestinal_organoids_Dexamethasone_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_228253]

value: pre-capture NG


title: nxid6898: WT_Intestinal_organoids_Dexamethasone_2_days_treatment_rep_1


title: nxid10009: WT_Intestinal_organoids_Desloratadine_2_days_treatment_rep_3

value: Desloratadine


title: iPSC neuron pre-capture [WTCHG_255094_228251]


title: nxid6888: WT_Intestinal_organoids_Desloratadine_2_days_treatment_rep_1


title: nxid8714: WT_Intestinal_organoids_Desloratadine_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_228252]


title: iPSC neuron pre-capture [WTCHG_255094_228254]


title: nxid10474: WT_Intestinal_organoids_Dehydrocholic_2_days_treatment_rep_3

value: Dehydrocholic


title: nxid10282: WT_Intestinal_organoids_Dehydrocholic_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_227279]


title: nxid8603: WT_Intestinal_organoids_Dehydrocholic_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_228250]


title: iPSC neuron pre-capture [WTCHG_255094_228249]


title: nxid10147: WT_Intestinal_organoids_Debrisoquin_2_days_treatment_rep_2

value: Debrisoquin


title: iPSC neuron pre-capture [WTCHG_255094_227277]


title: iPSC neuron pre-capture [WTCHG_255094_227276]


title: iPSC neuron pre-capture [WTCHG_255094_227278]


title: iPSC neuron pre-capture [WTCHG_255094_227275]


title: nxid10162: WT_Intestinal_organoids_Daunorubicin_2_days_treatment_rep_2

value: Intestine

value: Daunorubicin


title: iPSC neuron pre-capture [WTCHG_255094_227274]


title: nxid12473: AKP_Intestinal_organoids_Daunorubicin_2_days_treatment_rep_1

value: AKP


title: iPSC neuron pre-capture [WTCHG_255094_227273]


title: nxid10025: WT_Intestinal_organoids_Danazol_2_days_treatment_rep_3

value: WT

value: Danazol


title: iPSC neuron pre-capture [WTCHG_255094_227255]


title: nxid8730: WT_Intestinal_organoids_Danazol_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_227254]


title: iPSC neuron pre-capture [WTCHG_255094_227253]


title: nxid6904: WT_Intestinal_organoids_Danazol_2_days_treatment_rep_1


title: nxid10469: WT_Intestinal_organoids_Cyproheptadine_2_days_treatment_rep_4

value: Cyproheptadine


title: iPSC neuron pre-capture [WTCHG_255094_227252]


title: iPSC neuron pre-capture [WTCHG_255094_227251]


title: nxid8598: WT_Intestinal_organoids_Cyproheptadine_2_days_treatment_rep_2


title: nxid8468: WT_Intestinal_organoids_Debrisoquin_2_days_treatment_rep_1


title: nxid10277: WT_Intestinal_organoids_Cyproheptadine_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_227250]


title: iPSC neuron pre-capture [WTCHG_255094_228273]


title: iPSC neuron pre-capture [WTCHG_255094_226279]


title: nxid8483: WT_Intestinal_organoids_Daunorubicin_2_days_treatment_rep_1


title: nxid8482: WT_Intestinal_organoids_Cyclobenzaprine_2_days_treatment_rep_1

value: Cyclobenzaprine


title: nxid10161: WT_Intestinal_organoids_Cyclobenzaprine_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_226278]

value: iPSC-derived neuron


title: nxid10089: WT_Intestinal_organoids_Corticosterone_2_days_treatment_rep_2

value: Corticosterone


title: nxid8436: WT_Intestinal_organoids_Cyclizine_2_days_treatment_rep_1

value: Cyclizine


title: nxid10115: WT_Intestinal_organoids_Cyclizine_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_226277]

value: D


title: iPSC neuron pre-capture [WTCHG_255094_226276]


title: nxid8410: WT_Intestinal_organoids_Corticosterone_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_226273]


title: iPSC neuron pre-capture [WTCHG_255094_226275]


title: iPSC neuron pre-capture [WTCHG_255094_226274]


title: nxid12794: WT_Intestinal_organoids_Control_2_days_treatment_rep_2

value: Control


title: nxid12782: WT_Intestinal_organoids_Control_2_days_treatment_rep_1


title: nxid12711: WT_Intestinal_organoids_Control_2_days_treatment_rep_3


title: nxid6676: WT_Intestinal_organoids_Cyproheptadine_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_226256]

value: E


title: iPSC neuron pre-capture [WTCHG_255094_226255]

value: pre-capture NG


title: iPSC neuron pre-capture [WTCHG_255094_227249]


title: iPSC neuron pre-capture [WTCHG_255094_226254]


title: nxid12457: AKP_Intestinal_organoids_Control_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_226280]


title: nxid12445: AKP_Intestinal_organoids_Control_2_days_treatment_rep_1


title: nxid12493: AKP_Intestinal_organoids_Control_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_226252]


title: iPSC neuron pre-capture [WTCHG_255094_226253]


title: iPSC neuron pre-capture [WTCHG_255094_226251]


title: nxid12430: AKP_Intestinal_organoids_Control_1_days_treatment_rep_1


title: nxid12467: AKP_Intestinal_organoids_Control_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_226250]


title: iPSC neuron pre-capture [WTCHG_255094_225279]


title: iPSC neuron pre-capture [WTCHG_255094_225280]


title: nxid12477: AKP_Intestinal_organoids_Control_1_days_treatment_rep_3


title: nxid12431: AKP_Intestinal_organoids_Control_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_226249]


title: iPSC neuron pre-capture [WTCHG_255094_225278]


title: nxid12416: AKP_Intestinal_organoids_Control_2_days_treatment_rep_1


title: nxid12419: AKP_Intestinal_organoids_Control_2_days_treatment_rep_1


title: nxid12464: AKP_Intestinal_organoids_Control_2_days_treatment_rep_2


title: nxid12488: AKP_Intestinal_organoids_Control_2_days_treatment_rep_3


title: nxid12427: AKP_Intestinal_organoids_Control_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_225275]


title: iPSC neuron pre-capture [WTCHG_255094_225276]


title: nxid12429: AKP_Intestinal_organoids_Control_2_days_treatment_rep_2


title: nxid12705: AKP_Intestinal_organoids_Control_2_days_treatment_rep_1


title: nxid12498: AKP_Intestinal_organoids_Control_2_days_treatment_rep_5


title: nxid12454: AKP_Intestinal_organoids_Control_1_days_treatment_rep_2


title: nxid12490: AKP_Intestinal_organoids_Control_1_days_treatment_rep_4


title: nxid12450: AKP_Intestinal_organoids_Control_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_225255]


title: iPSC neuron pre-capture [WTCHG_255094_225273]


title: iPSC neuron pre-capture [WTCHG_255094_225256]


title: iPSC neuron pre-capture [WTCHG_255094_225254]


title: nxid12717: AKP_Intestinal_organoids_Control_2_days_treatment_rep_2


title: nxid12729: AKP_Intestinal_organoids_Control_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_225250]


title: nxid12463: AKP_Intestinal_organoids_Control_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_225253]


title: nxid12741: AKP_Intestinal_organoids_Control_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_225252]


title: nxid12753: AKP_Intestinal_organoids_Control_2_days_treatment_rep_5


title: iPSC neuron pre-capture [WTCHG_255094_225251]


title: iPSC neuron pre-capture [WTCHG_255094_225249]


title: iPSC neuron pre-capture [WTCHG_255094_225274]


title: iPSC neuron pre-capture [WTCHG_255094_208280]


title: nxid12788: AKP_Intestinal_organoids_Control_2_days_treatment_rep_6


title: iPSC neuron pre-capture [WTCHG_255094_208279]


title: nxid8020: WT_Intestinal_organoids_Control_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_208278]


title: nxid8032: WT_Intestinal_organoids_Control_2_days_treatment_rep_2


title: nxid12581: AKP_Intestinal_organoids_Control_2_days_treatment_rep_1


title: nxid12605: AKP_Intestinal_organoids_Control_2_days_treatment_rep_2


title: nxid8044: WT_Intestinal_organoids_Control_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_208276]


title: iPSC neuron pre-capture [WTCHG_255094_208277]


title: iPSC neuron pre-capture [WTCHG_255094_208275]


title: iPSC neuron pre-capture [WTCHG_255094_208274]


title: nxid12726: AKP_Intestinal_organoids_Control_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_208273]


title: iPSC neuron pre-capture [WTCHG_255094_208256]


title: nxid12762: AKP_Intestinal_organoids_Control_2_days_treatment_rep_5


title: nxid12750: AKP_Intestinal_organoids_Control_2_days_treatment_rep_4


title: nxid12567: WT_Intestinal_organoids_Control_2_days_treatment_rep_1


title: nxid12786: AKP_Intestinal_organoids_Control_2_days_treatment_rep_6


title: nxid12592: WT_Intestinal_organoids_Control_2_days_treatment_rep_4


title: nxid12591: WT_Intestinal_organoids_Control_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_208254]


title: nxid12568: WT_Intestinal_organoids_Control_2_days_treatment_rep_3


title: nxid12556: WT_Intestinal_organoids_Control_2_days_treatment_rep_6


title: nxid12532: WT_Intestinal_organoids_Control_2_days_treatment_rep_5


title: iPSC neuron pre-capture [WTCHG_255094_207280]


title: nxid9615: WT_Intestinal_organoids_Control_2_days_treatment_rep_1


title: nxid9627: WT_Intestinal_organoids_Control_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_208249]


title: iPSC neuron pre-capture [WTCHG_255094_208253]


title: iPSC neuron pre-capture [WTCHG_255094_208251]


title: iPSC neuron pre-capture [WTCHG_255094_208252]


title: nxid9639: WT_Intestinal_organoids_Control_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_207277]


title: iPSC neuron pre-capture [WTCHG_255094_207278]


title: nxid12530: WT_Intestinal_organoids_Control_2_days_treatment_rep_1


title: nxid12554: WT_Intestinal_organoids_Control_2_days_treatment_rep_2


title: nxid12602: WT_Intestinal_organoids_Control_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_225277]


title: iPSC neuron pre-capture [WTCHG_255094_207274]


title: nxid12543: WT_Intestinal_organoids_Control_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_207279]


title: iPSC neuron pre-capture [WTCHG_255094_208255]


title: nxid9603: WT_Intestinal_organoids_Control_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_207256]


title: nxid12588: WT_Intestinal_organoids_Control_2_days_treatment_rep_5


title: iPSC neuron pre-capture [WTCHG_255094_207275]


title: iPSC neuron pre-capture [WTCHG_255094_208250]


title: iPSC neuron pre-capture [WTCHG_255094_207255]


title: iPSC neuron pre-capture [WTCHG_255094_207273]


title: nxid12601: WT_Intestinal_organoids_Control_2_days_treatment_rep_8


title: iPSC neuron pre-capture [WTCHG_255094_207253]


title: nxid12565: WT_Intestinal_organoids_Control_2_days_treatment_rep_7


title: iPSC neuron pre-capture [WTCHG_255094_207251]


title: iPSC neuron pre-capture [WTCHG_255094_207250]


title: iPSC neuron pre-capture [WTCHG_255094_207254]


title: iPSC neuron pre-capture [WTCHG_255094_207252]


title: iPSC neuron pre-capture [WTCHG_255094_207276]


title: nxid12572: WT_Intestinal_organoids_Control_2_days_treatment_rep_2


title: nxid12536: WT_Intestinal_organoids_Control_2_days_treatment_rep_1


title: nxid12597: WT_Intestinal_organoids_Control_2_days_treatment_rep_4


title: nxid12549: WT_Intestinal_organoids_Control_2_days_treatment_rep_3


title: nxid12562: WT_Intestinal_organoids_Control_2_days_treatment_rep_5


title: iPSC neuron pre-capture [WTCHG_255094_207249]


title: nxid12598: WT_Intestinal_organoids_Control_2_days_treatment_rep_6


title: iPSC neuron pre-capture [WTCHG_255094_206280]


title: iPSC neuron pre-capture [WTCHG_255094_206279]


title: nxid8800: WT_Intestinal_organoids_Control_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_206277]


title: nxid12528: WT_Intestinal_organoids_Control_2_days_treatment_rep_7


title: nxid12517: WT_Intestinal_organoids_Control_2_days_treatment_rep_6


title: iPSC neuron pre-capture [WTCHG_255094_206276]


title: iPSC neuron pre-capture [WTCHG_255094_206278]


title: nxid8836: WT_Intestinal_organoids_Control_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_206274]


title: iPSC neuron pre-capture [WTCHG_255094_206275]


title: nxid8871: WT_Intestinal_organoids_Control_2_days_treatment_rep_4


title: nxid8883: WT_Intestinal_organoids_Control_2_days_treatment_rep_5


title: nxid8848: WT_Intestinal_organoids_Control_2_days_treatment_rep_3


title: nxid10587: WT_Intestinal_organoids_Control_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_206273]


title: iPSC neuron pre-capture [WTCHG_255094_206256]


title: iPSC neuron pre-capture [WTCHG_255094_206255]


title: nxid10095: WT_Intestinal_organoids_Control_2_days_treatment_rep_2


title: nxid10083: WT_Intestinal_organoids_Control_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_206254]


title: iPSC neuron pre-capture [WTCHG_255094_206253]


title: iPSC neuron pre-capture [WTCHG_255094_206252]


title: nxid10131: WT_Intestinal_organoids_Control_2_days_treatment_rep_3


title: nxid10143: WT_Intestinal_organoids_Control_2_days_treatment_rep_4


title: nxid8692: WT_Intestinal_organoids_Control_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_206251]


title: iPSC neuron pre-capture [WTCHG_255094_206250]


title: nxid8704: WT_Intestinal_organoids_Control_2_days_treatment_rep_2


title: nxid8752: WT_Intestinal_organoids_Control_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_205280]


title: iPSC neuron pre-capture [WTCHG_255094_206249]


title: nxid10467: WT_Intestinal_organoids_Control_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_205279]


title: iPSC neuron pre-capture [WTCHG_255094_205278]


title: iPSC neuron pre-capture [WTCHG_255094_205277]


title: nxid8740: WT_Intestinal_organoids_Control_2_days_treatment_rep_3


title: nxid10515: WT_Intestinal_organoids_Control_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_205276]


title: nxid10527: WT_Intestinal_organoids_Control_2_days_treatment_rep_4


title: nxid10479: WT_Intestinal_organoids_Control_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_205275]


title: nxid10562: WT_Intestinal_organoids_Control_2_days_treatment_rep_5


title: iPSC neuron pre-capture [WTCHG_255094_205274]


title: nxid10287: WT_Intestinal_organoids_Control_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_205273]


title: iPSC neuron pre-capture [WTCHG_255094_205255]


title: iPSC neuron pre-capture [WTCHG_255094_205256]


title: nxid10335: WT_Intestinal_organoids_Control_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_205254]


title: nxid10358: WT_Intestinal_organoids_Control_2_days_treatment_rep_5


title: nxid10035: WT_Intestinal_organoids_Control_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_205253]


title: iPSC neuron pre-capture [WTCHG_255094_205252]


title: iPSC neuron pre-capture [WTCHG_255094_205251]


title: nxid10070: WT_Intestinal_organoids_Control_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_205250]


title: nxid10047: WT_Intestinal_organoids_Control_2_days_treatment_rep_2


title: nxid9987: WT_Intestinal_organoids_Control_2_days_treatment_rep_5


title: nxid8596: WT_Intestinal_organoids_Control_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_204280]


title: iPSC neuron pre-capture [WTCHG_255094_204279]


title: nxid8608: WT_Intestinal_organoids_Control_2_days_treatment_rep_2


title: nxid8656: WT_Intestinal_organoids_Control_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_204278]


title: iPSC neuron pre-capture [WTCHG_255094_204277]


title: nxid10275: WT_Intestinal_organoids_Control_2_days_treatment_rep_1


title: nxid8679: WT_Intestinal_organoids_Control_2_days_treatment_rep_5


title: iPSC neuron pre-capture [WTCHG_255094_204276]


title: nxid8644: WT_Intestinal_organoids_Control_2_days_treatment_rep_3


title: nxid10323: WT_Intestinal_organoids_Control_2_days_treatment_rep_3


title: nxid8691: WT_Intestinal_organoids_Control_2_days_treatment_rep_6


title: nxid6866: WT_Intestinal_organoids_Control_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_204273]


title: nxid6878: WT_Intestinal_organoids_Control_2_days_treatment_rep_2


title: nxid6914: WT_Intestinal_organoids_Control_2_days_treatment_rep_3


title: nxid6926: WT_Intestinal_organoids_Control_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_204256]


title: iPSC neuron pre-capture [WTCHG_255094_205249]


title: nxid10082: WT_Intestinal_organoids_Control_2_days_treatment_rep_4


title: nxid8452: WT_Intestinal_organoids_Control_2_days_treatment_rep_1


title: nxid8464: WT_Intestinal_organoids_Control_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_204252]


title: nxid8499: WT_Intestinal_organoids_Control_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_204251]


title: nxid12424: AKP_Intestinal_organoids_Control_1_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_204250]


title: iPSC neuron pre-capture [WTCHG_255094_204275]


title: iPSC neuron pre-capture [WTCHG_255094_204249]


title: nxid12471: AKP_Intestinal_organoids_Control_1_days_treatment_rep_3


title: nxid12436: AKP_Intestinal_organoids_Control_1_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_203280]


title: nxid12483: AKP_Intestinal_organoids_Control_1_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_203279]


title: iPSC neuron pre-capture [WTCHG_255094_204274]


title: nxid6722: WT_Intestinal_organoids_Control_2_days_treatment_rep_2


title: nxid6686: WT_Intestinal_organoids_Control_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_203278]


title: iPSC neuron pre-capture [WTCHG_255094_203276]


title: iPSC neuron pre-capture [WTCHG_255094_203277]


title: nxid12708: AKP_Intestinal_organoids_Control_2_days_treatment_rep_1

value: extra


title: nxid6734: WT_Intestinal_organoids_Control_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_204255]


title: iPSC neuron pre-capture [WTCHG_255094_203275]


title: iPSC neuron pre-capture [WTCHG_255094_203274]


title: iPSC neuron pre-capture [WTCHG_255094_204254]


title: nxid12732: AKP_Intestinal_organoids_Control_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_204253]


title: nxid12720: AKP_Intestinal_organoids_Control_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_203256]


title: nxid8487: WT_Intestinal_organoids_Control_2_days_treatment_rep_3


title: nxid12432: AKP_Intestinal_organoids_Colchicine_2_days_treatment_rep_1

value: Colchicine


title: nxid12458: AKP_Intestinal_organoids_Colchicine_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_203255]


title: nxid10087: WT_Intestinal_organoids_Colchicine_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_203254]


title: nxid8408: WT_Intestinal_organoids_Colchicine_2_days_treatment_rep_1


title: nxid10104: WT_Intestinal_organoids_Clorsulon_2_days_treatment_rep_2

value: Clorsulon


title: nxid8425: WT_Intestinal_organoids_Clorsulon_2_days_treatment_rep_1

value: Intestine


title: nxid10158: WT_Intestinal_organoids_Clorgyline_2_days_treatment_rep_2

value: Clorgyline


title: iPSC neuron pre-capture [WTCHG_255094_203252]


title: iPSC neuron pre-capture [WTCHG_255094_203250]


title: nxid12484: AKP_Intestinal_organoids_Colchicine_1_days_treatment_rep_1

value: AKP


title: nxid8479: WT_Intestinal_organoids_Clorgyline_2_days_treatment_rep_1

value: WT


title: iPSC neuron pre-capture [WTCHG_255094_203251]


title: iPSC neuron pre-capture [WTCHG_255094_202280]


title: nxid10112: WT_Intestinal_organoids_Clomiphene_2_days_treatment_rep_2

value: Clomiphene


title: nxid8433: WT_Intestinal_organoids_Clomiphene_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_202278]


title: iPSC neuron pre-capture [WTCHG_255094_202279]


title: iPSC neuron pre-capture [WTCHG_255094_202276]


title: nxid10369: WT_Intestinal_organoids_Clofibrate_2_days_treatment_rep_3

value: Clofibrate


title: nxid10561: WT_Intestinal_organoids_Clofibrate_2_days_treatment_rep_4


title: iPSC neuron pre-capture [WTCHG_255094_202277]


title: iPSC neuron pre-capture [WTCHG_255094_202275]


title: iPSC neuron pre-capture [WTCHG_255094_202274]


title: nxid10171: WT_Intestinal_organoids_Clofazimine_2_days_treatment_rep_2

value: Clofazimine


title: iPSC neuron pre-capture [WTCHG_255094_202256]

value: iPSC-derived neuron


title: iPSC neuron pre-capture [WTCHG_255094_203253]


title: nxid8492: WT_Intestinal_organoids_Clofazimine_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_202255]


title: nxid8690: WT_Intestinal_organoids_Clofibrate_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_203249]


title: nxid6768: WT_Intestinal_organoids_Clofibrate_2_days_treatment_rep_1


title: nxid10321: WT_Intestinal_organoids_Clindamycin_2_days_treatment_rep_3

value: Clindamycin


title: iPSC neuron pre-capture [WTCHG_255094_202252]


title: iPSC neuron pre-capture [WTCHG_255094_202254]


title: iPSC neuron pre-capture [WTCHG_255094_202253]


title: nxid8642: WT_Intestinal_organoids_Clindamycin_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_202251]


title: nxid6720: WT_Intestinal_organoids_Clindamycin_2_days_treatment_rep_1


title: nxid10513: WT_Intestinal_organoids_Clindamycin_2_days_treatment_rep_4


title: nxid12496: AKP_Intestinal_organoids_Clomiphene_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_202250]


title: nxid8418: WT_Intestinal_organoids_Clemastine_2_days_treatment_rep_1

value: Clemastine


title: nxid10097: WT_Intestinal_organoids_Clemastine_2_days_treatment_rep_2


title: iPSC neuron pre-capture [WTCHG_255094_202249]


title: iPSC neuron pre-capture [WTCHG_255094_202273]

value: D


title: nxid10537: WT_Intestinal_organoids_Clarithromycin_2_days_treatment_rep_4

value: Clarithromycin


title: iPSC neuron pre-capture [WTCHG_255094_201280]


title: iPSC neuron pre-capture [WTCHG_255094_201278]


title: nxid10345: WT_Intestinal_organoids_Clarithromycin_2_days_treatment_rep_3


title: nxid8666: WT_Intestinal_organoids_Clarithromycin_2_days_treatment_rep_2


title: nxid8780: WT_Intestinal_organoids_Ciprofloxacin_2_days_treatment_rep_2

value: Ciprofloxacin


title: nxid6744: WT_Intestinal_organoids_Clarithromycin_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_201279]

value: pre-capture NG


title: iPSC neuron pre-capture [WTCHG_255094_201276]


title: nxid10075: WT_Intestinal_organoids_Ciprofloxacin_2_days_treatment_rep_3


title: nxid6954: WT_Intestinal_organoids_Ciprofloxacin_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_201274]


title: nxid10096: WT_Intestinal_organoids_Cinnarizine_2_days_treatment_rep_2

value: Cinnarizine


title: iPSC neuron pre-capture [WTCHG_255094_201275]


title: iPSC neuron pre-capture [WTCHG_255094_201273]


title: iPSC neuron pre-capture [WTCHG_255094_201256]

value: E


title: nxid8417: WT_Intestinal_organoids_Cinnarizine_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_201255]


title: iPSC neuron pre-capture [WTCHG_255094_201253]


title: iPSC neuron pre-capture [WTCHG_255094_201254]


title: nxid8882: WT_Intestinal_organoids_Cimetidine_2_days_treatment_rep_2

value: Cimetidine


title: nxid9698: WT_Intestinal_organoids_Cimetidine_2_days_treatment_rep_3

value: Intestine


title: nxid8115: WT_Intestinal_organoids_Cimetidine_2_days_treatment_rep_1


title: iPSC neuron pre-capture [WTCHG_255094_201277]


title: nxid8073: WT_Intestinal_organoids_Chlorzoxazone_2_days_treatment_rep_1

value: Chlorzoxazone


title: iPSC neuron pre-capture [WTCHG_255094_201251]


title: nxid9656: WT_Intestinal_organoids_Chlorzoxazone_2_days_treatment_rep_3


title: iPSC neuron pre-capture [WTCHG_255094_201249]


title: iPSC neuron pre-capture [WTCHG_255094_201250]


title: nxid8840: WT_Intestinal_organoids_Chlorzoxazone_2_days_treatment_rep_2


title: nxid10616: WT_Intestinal_organoids_Chlorzoxazone_2_days_treatment_rep_4


title: nxid8473: WT_Intestinal_organoids_Chloroquine_2_days_treatment_rep_1

value: Chloroquine


title: nxid10152: WT_Intestinal_organoids_Chloroquine_2_days_treatment_rep_2

value: WT


title: nxid10525: WT_Intestinal_organoids_Chlormadinone_2_days_treatment_rep_4

value: Chlormadinone


title: nasal mucosa, 1409/019/047 (S00217244A)

city: Liverpool

first: Jesús

last: Reiné

state: Merseyside

address: Pembroke Place

department: Clinical Sciences

institute: Liverpool School of Tropical Medicine

data_processing:
Quality control of raw sequencing data was done using fastQC.
Mapping to a human reference genome assembly (GRCh38) was done using STAR 2.5.0a, using default parameters.
Read counts from the resulting BAM alignment files were obtained with featureCounts (default parameters) using a GTF gene annotation from the Ensembl database.
Genome_build: GRCh38
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

source_name: nasal mucosa

extract_protocol:
RNA extraction was performed using the RNEasy micro kit (Qiagen) with on column DNA digestion. Extracted RNA was quantified using a QubitTM (ThermoFisher).
Sample integrity assessment (Bioanalyzer, Agilent), library preparation and RNA-sequencing (Illumina Hiseq 4000, 20M reads, 100 paired-end reads) were performed at the Beijing Genome Institute (China).

treatment_protocol: Nasal cells were collected in RNALater (ThermoFisher) at -80 o C until extraction.

tag: timepoint

value: NOVIRUS

tag: Sex

value: M

tag: carriage

value: NEG

tag: age

tag: vaccine

value: LAIV


title: nasal mucosa, 1573/019/211 (S00209506A)

value: F

value: POS

value: TIV


title: nasal mucosa, 1535/019/173 (S00217243A)


title: nasal mucosa, 1578/019/216 (S00209507A)


title: nxid10105: WT_Intestinal_organoids_Cilostazol_2_days_treatment_rep_2

value: Cilostazol


title: nasal mucosa, 1581/019/219 (S00209509A)


title: iPSC neuron pre-capture [WTCHG_255094_201252]

value: pre-capture NG

value: iPSC-derived neuron


title: nasal mucosa, 1575/019/213 (S00209503A)


title: nxid10333: WT_Intestinal_organoids_Chlormadinone_2_days_treatment_rep_3


title: nxid8426: WT_Intestinal_organoids_Cilostazol_2_days_treatment_rep_1


title: nasal mucosa, 1571/019/209 (S00209502A)


title: nxid6732: WT_Intestinal_organoids_Chlormadinone_2_days_treatment_rep_1


title: nxid10121: WT_Intestinal_organoids_Chloramphenicol_2_days_treatment_rep_2

value: Chloramphenicol


title: nasal mucosa, 1570/019/208 (S00209501A)


title: nasal mucosa, 1569/019/207 (S00209500A)


title: nxid10144: WT_Intestinal_organoids_Chenodiol_2_days_treatment_rep_2

value: Chenodiol


title: nasal mucosa, 1568/019/206 (S00209499A)


title: nasal mucosa, 1567/019/205 (S00209498A)


title: nxid8465: WT_Intestinal_organoids_Chenodiol_2_days_treatment_rep_1

value: Intestine


title: nxid10472: WT_Intestinal_organoids_Celiprolol_2_days_treatment_rep_4

value: Celiprolol


title: nasal mucosa, 1581/019/219 (S00208026A)


title: nxid8654: WT_Intestinal_organoids_Chlormadinone_2_days_treatment_rep_2


title: nasal mucosa, 1573/019/211 (S00208023A)


title: nasal mucosa, 1571/019/209 (S00208020A)


title: nxid8601: WT_Intestinal_organoids_Celiprolol_2_days_treatment_rep_2


title: nxid8110: WT_Intestinal_organoids_Ceftibuten_2_days_treatment_rep_1

value: Ceftibuten


title: nasal mucosa, 1575/019/213 (S00208021A)


title: nasal mucosa, 1576/019/214 (S00208022A)


title: nxid10280: WT_Intestinal_organoids_Celiprolol_2_days_treatment_rep_3

value: WT


title: nxid6679: WT_Intestinal_organoids_Celiprolol_2_days_treatment_rep_1


title: nasal mucosa, 1570/019/208 (S00208019A)


title: nxid8877: WT_Intestinal_organoids_Ceftibuten_2_days_treatment_rep_2


title: nxid8495: WT_Intestinal_organoids_Ceftazidime_2_days_treatment_rep_1

value: Ceftazidime


title: nxid10174: WT_Intestinal_organoids_Ceftazidime_2_days_treatment_rep_2


title: nasal mucosa, 1569/019/207 (S00208018A)

value: NOVIRUS


title: nasal mucosa, 1568/019/206 (S00208017A)


title: nasal mucosa, 1567/019/205 (S00208016A)

value: M


title: nxid8098: WT_Intestinal_organoids_Cefpodoxime_2_days_treatment_rep_1

value: Cefpodoxime


title: nxid8442: WT_Intestinal_organoids_Chloramphenicol_2_days_treatment_rep_1


title: nasal mucosa, 1589/019/227 (S00208025A)

value: NEG

value: LAIV


title: nxid9681: WT_Intestinal_organoids_Cefpodoxime_2_days_treatment_rep_3


title: nxid10641: WT_Intestinal_organoids_Cefpodoxime_2_days_treatment_rep_4


title: nasal mucosa, 1555/019/193 (S00207861A)

value: F

value: POS


title: nasal mucosa, 1581/019/219 (S00207967A)


title: nasal mucosa, 1566/019/204 (S00207864A)


title: nxid8865: WT_Intestinal_organoids_Cefpodoxime_2_days_treatment_rep_2


title: nasal mucosa, 1557/019/195 (S00207862A)

value: TIV


title: nxid9693: WT_Intestinal_organoids_Ceftibuten_2_days_treatment_rep_3


title: nasal mucosa, 1578/019/216 (S00208024A)


title: nxid10138: WT_Intestinal_organoids_Cefotiam_2_days_treatment_rep_2

value: Cefotiam


title: nasal mucosa, 1545/019/183 (S00207857A)


title: nasal mucosa, 1547/019/185 (S00207858A)


title: nxid10653: WT_Intestinal_organoids_Ceftibuten_2_days_treatment_rep_4


title: nasal mucosa, 1499/019/137 (S00207854A)


title: nxid10090: WT_Intestinal_organoids_Ceforanide_2_days_treatment_rep_2

value: Ceforanide


title: nxid8459: WT_Intestinal_organoids_Cefotiam_2_days_treatment_rep_1


title: nxid8411: WT_Intestinal_organoids_Ceforanide_2_days_treatment_rep_1


title: nasal mucosa, 1573/019/211 (S00207851A)


title: nasal mucosa, 1556/019/194 (S00207859A)


title: nxid10027: WT_Intestinal_organoids_Cefepime_2_days_treatment_rep_3

value: Cefepime


title: nxid8732: WT_Intestinal_organoids_Cefepime_2_days_treatment_rep_2


title: nasal mucosa, 1575/019/213 (S00207847A)


title: nxid6906: WT_Intestinal_organoids_Cefepime_2_days_treatment_rep_1


title: nasal mucosa, 1576/019/214 (S00207848A)


title: nxid8747: WT_Intestinal_organoids_Cefdinir_2_days_treatment_rep_2

value: Cefdinir


title: nxid10042: WT_Intestinal_organoids_Cefdinir_2_days_treatment_rep_3

value: Intestine


title: nxid6921: WT_Intestinal_organoids_Cefdinir_2_days_treatment_rep_1


title: nasal mucosa, 1571/019/209 (S00207845A)


title: nasal mucosa, 1569/019/207 (S00207843A)


title: nxid10101: WT_Intestinal_organoids_Cefadroxil_2_days_treatment_rep_2

value: Cefadroxil


title: nasal mucosa, 1567/019/205 (S00207841A)


title: nasal mucosa, 1568/019/206 (S00207842A)


title: nxid8422: WT_Intestinal_organoids_Cefadroxil_2_days_treatment_rep_1


title: nasal mucosa, 1564/019/202 (S00207285A)


title: nasal mucosa, 1563/019/201 (S00207283A)


title: nxid10150: WT_Intestinal_organoids_Cefaclor_2_days_treatment_rep_2

value: Cefaclor


title: nxid8471: WT_Intestinal_organoids_Cefaclor_2_days_treatment_rep_1

value: WT


title: nxid8029: WT_Intestinal_organoids_Catharanthine_2_days_treatment_rep_1

value: Catharanthine


title: nasal mucosa, 1558/019/196 (S00207282A)

value: NOVIRUS


title: nasal mucosa, 1542/019/180 (S00207280A)

value: M


title: nasal mucosa, 1553/019/191 (S00207279A)


title: nxid8796: WT_Intestinal_organoids_Catharanthine_2_days_treatment_rep_2


title: nxid8735: WT_Intestinal_organoids_Carprofen_2_days_treatment_rep_2

value: Carprofen


title: nasal mucosa, 1589/019/227 (S00206633A)

value: baseline

value: NEG


title: nxid10572: WT_Intestinal_organoids_Catharanthine_2_days_treatment_rep_4


title: nxid10030: WT_Intestinal_organoids_Carprofen_2_days_treatment_rep_3


title: nasal mucosa, 1565/019/203 (S00205918A)

value: LAIV


title: nxid6909: WT_Intestinal_organoids_Carprofen_2_days_treatment_rep_1


title: nasal mucosa, 1566/019/204 (S00205919A)


title: nxid10175: WT_Intestinal_organoids_Carbamazepine_2_days_treatment_rep_1

value: Carbamazepine


title: nasal mucosa, 1555/019/193 (S00205916A)

value: F

value: POS

value: TIV


title: nasal mucosa, 1557/019/195 (S00205917A)


title: nxid10051: WT_Intestinal_organoids_Carbadox_2_days_treatment_rep_3

value: Carbadox


title: nasal mucosa, 1547/019/185 (S00205913A)


title: nasal mucosa, 1556/019/194 (S00205914A)


title: nxid8756: WT_Intestinal_organoids_Carbadox_2_days_treatment_rep_2


title: nasal mucosa, 1545/019/183 (S00205912A)


title: iPSC neuron pre-capture [WTCHG_255094_203273]

value: pre-capture NG

value: iPSC-derived neuron

value: D


title: nasal mucosa, 1499/019/137 (S00205909A)


title: nxid8723: WT_Intestinal_organoids_Canrenone_2_days_treatment_rep_2

value: Intestine

value: Canrenone


title: nasal mucosa, 1559/019/197 (S00205908A)


title: nxid9612: WT_Intestinal_organoids_Catharanthine_2_days_treatment_rep_3

value: WT

value: Catharanthine


title: nxid6897: WT_Intestinal_organoids_Canrenone_2_days_treatment_rep_1


title: nasal mucosa, 1564/019/202 (S00205906A)

value: NOVIRUS

value: M


title: nasal mucosa, 1581/019/219 (S00206634A)

value: baseline


title: nasal mucosa, 1563/019/201 (S00205904A)


title: nxid6885: WT_Intestinal_organoids_Calcipotriene_2_days_treatment_rep_1

value: Calcipotriene


title: nxid8711: WT_Intestinal_organoids_Calcipotriene_2_days_treatment_rep_2


title: nxid12433: AKP_Intestinal_organoids_Butoconazole_2_days_treatment_rep_1

value: AKP

value: Butoconazole


title: nxid12459: AKP_Intestinal_organoids_Butoconazole_2_days_treatment_rep_2


title: nasal mucosa, 1542/019/180 (S00205900A)


title: nxid10006: WT_Intestinal_organoids_Calcipotriene_2_days_treatment_rep_3


title: nasal mucosa, 1558/019/196 (S00205902A)

value: F

value: LAIV


title: nasal mucosa, 1553/019/191 (S00205899A)

value: POS

value: TIV


title: nxid10172: WT_Intestinal_organoids_Butoconazole_2_days_treatment_rep_2


title: nasal mucosa, 1554/019/192 (S00205901A)


title: nxid6930: WT_Intestinal_organoids_Carbadox_2_days_treatment_rep_1

value: Carbadox


title: nasal mucosa, 4405/019/179 (S00205653A)

value: NEG


title: nxid8493: WT_Intestinal_organoids_Butoconazole_2_days_treatment_rep_1


title: nxid12485: AKP_Intestinal_organoids_Butoconazole_1_days_treatment_rep_1


title: nxid10366: WT_Intestinal_organoids_Butenafine_2_days_treatment_rep_3

value: Butenafine


title: nasal mucosa, 1544/019/182 (S00205648A)


title: nasal mucosa, 1543/019/181 (S00205647A)


title: nxid10558: WT_Intestinal_organoids_Butenafine_2_days_treatment_rep_4

value: Intestine


title: nasal mucosa, 1503/019/141 (S00205646A)


title: nxid10018: WT_Intestinal_organoids_Canrenone_2_days_treatment_rep_3

value: Canrenone


title: nxid8687: WT_Intestinal_organoids_Butenafine_2_days_treatment_rep_2

value: WT


title: nasal mucosa, 1526/019/164 (S00205645A)


title: nxid6764: WT_Intestinal_organoids_Butenafine_2_days_treatment_rep_1


title: nasal mucosa, 1566/019/204 (S00205643A)


title: nasal mucosa, 1565/019/203 (S00205642A)


title: nxid10319: WT_Intestinal_organoids_Buspirone_2_days_treatment_rep_3

value: Buspirone


title: nxid10511: WT_Intestinal_organoids_Buspirone_2_days_treatment_rep_4


title: nasal mucosa, 1557/019/195 (S00205641A)

value: NOVIRUS


title: nxid8640: WT_Intestinal_organoids_Buspirone_2_days_treatment_rep_2


title: nasal mucosa, 1555/019/193 (S00205640A)


title: nxid6718: WT_Intestinal_organoids_Buspirone_2_days_treatment_rep_1


title: nasal mucosa, 1551/019/189 (S00205639A)

value: Coronavirus

value: M


title: nasal mucosa, 1556/019/194 (S00205638A)


title: nxid8043: WT_Intestinal_organoids_Bupropion_2_days_treatment_rep_1

value: Bupropion


title: nasal mucosa, 1547/019/185 (S00205637A)


title: nasal mucosa, 1548/019/186 (S00205650A)


title: nxid9626: WT_Intestinal_organoids_Bupropion_2_days_treatment_rep_3


title: nasal mucosa, 1545/019/183 (S00205636A)


title: nxid8810: WT_Intestinal_organoids_Bupropion_2_days_treatment_rep_2


title: nasal mucosa, 1576/019/214 (S00205240A)

value: baseline


title: nxid10586: WT_Intestinal_organoids_Bupropion_2_days_treatment_rep_4


title: nasal mucosa, 1575/019/213 (S00205239A)


title: nxid8405: WT_Intestinal_organoids_Bumetanide_2_days_treatment_rep_1

value: Bumetanide


title: nasal mucosa, 1573/019/211 (S00205237A)

value: F


title: nasal mucosa, 1571/019/209 (S00205235A)

value: LAIV


title: nasal mucosa, 1578/019/216 (S00205241A)


title: nxid10084: WT_Intestinal_organoids_Bumetanide_2_days_treatment_rep_2


title: nxid8484: WT_Intestinal_organoids_Budesonide_2_days_treatment_rep_1

value: Budesonide


title: nxid10102: WT_Intestinal_organoids_Brompheniramine_2_days_treatment_rep_2

value: Brompheniramine


title: nxid10163: WT_Intestinal_organoids_Budesonide_2_days_treatment_rep_2


title: nasal mucosa, 1570/019/208 (S00205234A)

value: POS


title: nxid10534: WT_Intestinal_organoids_Bromhexine_2_days_treatment_rep_3

value: Bromhexine


title: nxid10342: WT_Intestinal_organoids_Bromhexine_2_days_treatment_rep_2


title: nasal mucosa, 1569/019/207 (S00205233A)

value: NEG

value: TIV


title: nxid8423: WT_Intestinal_organoids_Brompheniramine_2_days_treatment_rep_1

value: Intestine


title: nasal mucosa, 1568/019/206 (S00205232A)


title: nasal mucosa, 1567/019/205 (S00205231A)


title: nxid8663: WT_Intestinal_organoids_Bromhexine_2_days_treatment_rep_1

value: WT


title: nxid10099: WT_Intestinal_organoids_Brinzolamide_2_days_treatment_rep_2

value: Brinzolamide


title: nasal mucosa, 1564/019/202 (S00205227A)

value: NOVIRUS


title: nxid10510: WT_Intestinal_organoids_Bicalutamide_2_days_treatment_rep_3

value: Bicalutamide


title: nxid10318: WT_Intestinal_organoids_Bicalutamide_2_days_treatment_rep_2


title: nasal mucosa, 1558/019/196 (S00205223A)


title: nasal mucosa, 1554/019/192 (S00205222A)


title: nasal mucosa, 1563/019/201 (S00205225A)


title: nxid8420: WT_Intestinal_organoids_Brinzolamide_2_days_treatment_rep_1


title: nasal mucosa, 1559/019/197 (S00205229A)


title: nasal mucosa, 1542/019/180 (S00205221A)

value: M


title: nxid8639: WT_Intestinal_organoids_Bicalutamide_2_days_treatment_rep_1


title: nxid10362: WT_Intestinal_organoids_Bethanechol_2_days_treatment_rep_3

value: Bethanechol


title: nasal mucosa, 1565/019/203 (S00204374A)

value: baseline


title: nxid10554: WT_Intestinal_organoids_Bethanechol_2_days_treatment_rep_4


title: nasal mucosa, 1553/019/191 (S00205220A)


title: nxid6761: WT_Intestinal_organoids_Bethanechol_2_days_treatment_rep_1


title: nxid8683: WT_Intestinal_organoids_Bethanechol_2_days_treatment_rep_2


title: nxid8707: WT_Intestinal_organoids_Benzylpenicillin_2_days_treatment_rep_2

value: Benzylpenicillin


title: nasal mucosa, 1563/019/201 (S00203768A)

value: F


title: nasal mucosa, 1564/019/202 (S00203767A)

value: LAIV


title: nasal mucosa, 1558/019/196 (S00203765A)


title: nxid6881: WT_Intestinal_organoids_Benzylpenicillin_2_days_treatment_rep_1


title: nasal mucosa, 1559/019/197 (S00203764A)


title: nxid8086: WT_Intestinal_organoids_Benzoxiquine_2_days_treatment_rep_1

value: Benzoxiquine


title: nasal mucosa, 1554/019/192 (S00203518A)


title: nxid9669: WT_Intestinal_organoids_Benzoxiquine_2_days_treatment_rep_3


title: nxid8853: WT_Intestinal_organoids_Benzoxiquine_2_days_treatment_rep_2


title: nasal mucosa, 1537/019/175 (S00203339A)

value: Rhinovirus


title: nxid10629: WT_Intestinal_organoids_Benzoxiquine_2_days_treatment_rep_4


title: nxid8777: WT_Intestinal_organoids_Benzathine_2_days_treatment_rep_2

value: Benzathine


title: nasal mucosa, 1543/019/181 (S00203337A)

value: POS


title: nxid10072: WT_Intestinal_organoids_Benzathine_2_days_treatment_rep_3


title: nasal mucosa, 1503/019/141 (S00203334A)

value: NEG


title: nasal mucosa, 4405/019/179 (S00203335A)

value: TIV


title: nxid8456: WT_Intestinal_organoids_Benzbromarone_2_days_treatment_rep_1

value: Intestine

value: Benzbromarone


title: nxid10135: WT_Intestinal_organoids_Benzbromarone_2_days_treatment_rep_2

value: WT


title: nasal mucosa, 1545/019/183 (S00204372A)

value: NOVIRUS


title: nxid6951: WT_Intestinal_organoids_Benzathine_2_days_treatment_rep_1


title: nasal mucosa, 1542/019/180 (S00203331A)


title: nasal mucosa, 1557/019/195 (S00202730A)


title: nxid8432: WT_Intestinal_organoids_Benfluorex_2_days_treatment_rep_1

value: Benfluorex


title: nxid10498: WT_Intestinal_organoids_Azithromycin_2_days_treatment_rep_3

value: Azithromycin


title: nasal mucosa, 1556/019/194 (S00202729A)


title: nasal mucosa, 1553/019/191 (S00203332A)

value: M


title: nasal mucosa, 1555/019/193 (S00202728A)

value: baseline


title: nasal mucosa, 1566/019/204 (S00203763A)


title: nxid10002: WT_Intestinal_organoids_Benzylpenicillin_2_days_treatment_rep_3

value: Benzylpenicillin


title: nasal mucosa, 1551/019/189 (S00202727A)

value: Coronavirus


title: nxid10504: WT_Intestinal_organoids_Azapropazone_2_days_treatment_rep_4

value: Azapropazone


title: nxid10306: WT_Intestinal_organoids_Azithromycin_2_days_treatment_rep_2


title: nasal mucosa, 1499/019/137 (S00202725A)

value: LAIV


title: nxid10312: WT_Intestinal_organoids_Azapropazone_2_days_treatment_rep_3


title: nasal mucosa, 1544/019/182 (S00203338A)


title: nasal mucosa, 1548/019/186 (S00202439A)

value: F


title: nasal mucosa, 1547/019/185 (S00202726A)


title: nxid6711: WT_Intestinal_organoids_Azapropazone_2_days_treatment_rep_1


title: nasal mucosa, 1503/019/141 (S00201001A)


title: nasal mucosa, 1526/019/164 (S00201000A)


title: nxid10276: WT_Intestinal_organoids_Azaguanine_2_days_treatment_rep_3

value: Azaguanine


title: nasal mucosa, 1544/019/182 (S00200998A)

value: POS


title: nxid10468: WT_Intestinal_organoids_Azaguanine_2_days_treatment_rep_4


title: nxid8597: WT_Intestinal_organoids_Azaguanine_2_days_treatment_rep_2


title: nxid12593: AKP_Intestinal_organoids_Azaguanine_2_days_treatment_rep_1

value: AKP


title: nasal mucosa, 1543/019/181 (S00200997A)

value: TIV


title: nasal mucosa, 1526/019/164 (S00203333A)


title: nxid8074: WT_Intestinal_organoids_Avobenzone_2_days_treatment_rep_1

value: Intestine

value: Avobenzone


title: nxid6675: WT_Intestinal_organoids_Azaguanine_2_days_treatment_rep_1

value: WT


title: nasal mucosa, 1504/019/142 (S00199343A)

value: NOVIRUS

value: NEG


title: nxid10111: WT_Intestinal_organoids_Benfluorex_2_days_treatment_rep_2

value: Benfluorex


title: nxid9657: WT_Intestinal_organoids_Avobenzone_2_days_treatment_rep_3


title: nxid8841: WT_Intestinal_organoids_Avobenzone_2_days_treatment_rep_2


title: nxid8627: WT_Intestinal_organoids_Azithromycin_2_days_treatment_rep_1

value: Azithromycin


title: nasal mucosa, 4405/019/179 (S00200995A)

value: baseline


title: nxid10486: WT_Intestinal_organoids_Atorvastatin_2_days_treatment_rep_3

value: Atorvastatin


title: nasal mucosa, 1496/019/134 (S00199340A)

value: Rhinovirus


title: nxid10617: WT_Intestinal_organoids_Avobenzone_2_days_treatment_rep_4


title: nxid8633: WT_Intestinal_organoids_Azapropazone_2_days_treatment_rep_2

value: Azapropazone


title: nasal mucosa, 1500/019/138 (S00199341A)

value: Coronavirus

value: M

value: LAIV


title: nxid10294: WT_Intestinal_organoids_Atorvastatin_2_days_treatment_rep_2


title: nasal mucosa, 1486/019/124 (S00199338A)


title: nxid8615: WT_Intestinal_organoids_Atorvastatin_2_days_treatment_rep_1


title: nasal mucosa, 1484/019/122 (S00199337A)

value: POS


title: nasal mucosa, 1537/019/175 (S00200999A)


title: nxid12781: AKP_Intestinal_organoids_Atorvastatin_2_days_treatment_rep_2

value: AKP

value: extra


title: nxid12793: AKP_Intestinal_organoids_Atorvastatin_2_days_treatment_rep_3

value: Intestine


title: nasal mucosa, 1434/019/072 (S00199344A)

value: TIV


title: nasal mucosa, 1435/019/073 (S00199335A)

value: F


title: nasal mucosa, 1496/019/134 (S00198892A)


title: nasal mucosa, 1434/019/072 (S00198891A)

value: NOVIRUS


title: nasal mucosa, 1504/019/142 (S00198893A)

value: NEG


title: nasal mucosa, 1435/019/073 (S00198889A)


title: nxid6939: WT_Intestinal_organoids_Arbutin_2_days_treatment_rep_1

value: WT

value: Arbutin


title: nxid6956: WT_Intestinal_organoids_Argatroban_2_days_treatment_rep_1

value: Argatroban


title: nasal mucosa, 1535/019/173 (S00198885A)


title: nasal mucosa, 1486/019/124 (S00198888A)


title: nxid8765: WT_Intestinal_organoids_Arbutin_2_days_treatment_rep_2


title: nxid10077: WT_Intestinal_organoids_Argatroban_2_days_treatment_rep_3


title: nxid10324: WT_Intestinal_organoids_Apramycin_2_days_treatment_rep_3

value: Apramycin


title: nasal mucosa, 1535/019/173 (S00198887A)


title: nxid10060: WT_Intestinal_organoids_Arbutin_2_days_treatment_rep_3


title: nxid10516: WT_Intestinal_organoids_Apramycin_2_days_treatment_rep_4


title: nxid6723: WT_Intestinal_organoids_Apramycin_2_days_treatment_rep_1


title: nasal mucosa, 1480/019/118 (S00198886A)


title: nxid12769: AKP_Intestinal_organoids_Atorvastatin_2_days_treatment_rep_1

value: Atorvastatin


title: nasal mucosa, 1504/019/142 (S00197824A)


title: nxid8645: WT_Intestinal_organoids_Apramycin_2_days_treatment_rep_2


title: nxid10540: WT_Intestinal_organoids_Apomorphine_2_days_treatment_rep_4

value: Apomorphine


title: nasal mucosa, 1409/019/047 (S00198890A)


title: nxid8782: WT_Intestinal_organoids_Argatroban_2_days_treatment_rep_2


title: nxid10348: WT_Intestinal_organoids_Apomorphine_2_days_treatment_rep_3


title: nasal mucosa, 1435/019/073 (S00197816A)


title: nasal mucosa, 1484/019/122 (S00197818A)


title: nxid8669: WT_Intestinal_organoids_Apomorphine_2_days_treatment_rep_2


title: nxid6747: WT_Intestinal_organoids_Apomorphine_2_days_treatment_rep_1


title: nasal mucosa, 1480/019/118 (S00197815A)


title: nxid12442: AKP_Intestinal_organoids_Antimycin_1_days_treatment_rep_1

value: Antimycin


title: nasal mucosa, 1409/019/047 (S00196312A)

value: baseline

value: M


title: nasal mucosa, 1434/019/072 (S00196311A)


title: nxid12415: AKP_Intestinal_organoids_Antimycin_2_days_treatment_rep_1


title: nasal mucosa, 1504/019/142 (S00196310A)

value: LAIV


title: nxid12476: AKP_Intestinal_organoids_Antimycin_2_days_treatment_rep_2

value: AKP


title: nasal mucosa, 1500/019/138 (S00198596A)

value: Coronavirus


title: nasal mucosa, 1500/019/138 (S00196308A)


title: nasal mucosa, 1496/019/134 (S00196307A)

value: Rhinovirus


title: nxid9649: WT_Intestinal_organoids_Antimycin_2_days_treatment_rep_3

value: Intestine


title: nxid8833: WT_Intestinal_organoids_Antimycin_2_days_treatment_rep_2


title: nxid8066: WT_Intestinal_organoids_Antimycin_2_days_treatment_rep_1


title: nasal mucosa, 1500/019/138 (S00197822A)


title: nasal mucosa, 1535/019/173 (S00196304A)

value: F

value: POS

value: TIV


title: nxid10609: WT_Intestinal_organoids_Antimycin_2_days_treatment_rep_4

value: WT


title: nasal mucosa, 1486/019/124 (S00196306A)

value: NOVIRUS

value: NEG


title: nasal mucosa, 1484/019/122 (S00196305A)


title: nasal mucosa, 1486/019/124 (S00197819A)


title: nxid8103: WT_Intestinal_organoids_Antazoline_2_days_treatment_rep_1

value: Antazoline


title: nxid9686: WT_Intestinal_organoids_Antazoline_2_days_treatment_rep_3


title: nasal mucosa, 1480/019/118 (S00196302A)


title: nxid10646: WT_Intestinal_organoids_Antazoline_2_days_treatment_rep_4


title: nasal mucosa, 1435/019/073 (S00196303A)


title: nxid8870: WT_Intestinal_organoids_Antazoline_2_days_treatment_rep_2


title: nxid10064: WT_Intestinal_organoids_Aniracetam_2_days_treatment_rep_2

value: Aniracetam


title: 9-009 (miRNA-Seq)

city: Rochester

first: Daniel

middle: Rothschild

last: OBrien

state: MN

address: 200 First St. SW

country: USA

institute: The Mayo Clinic

data_processing:
Bowtie for alignment
miRDeep2 to quantify expression
Genome_build: hg38
Supplementary_files_format_and_content: tsv format containg raw miRNA precursor counts

source_name: Duodenal mucosa (biopsy)

extract_protocol:
RNA was extracted from freshly frozen biopsy tissue with TRIzol (Ambion, Waltham, Massachusetts) and chloroform.  After centrifugation, the aqueous phase was purified with an RNeasy Mini Kit (Qiagen, Valencia, California). The quality of total RNA samples was assessed by using an Agilent bioanalyzer (Santa Clara, CA).
RNA libraries were prepared according to the manufacturer's instructions for the TruSeq Stranded Total RNA Library preparation kit (Illumina, San Diego, CA). Unique indices, included in the standard TruSeq kits were incorporated at the adaptor ligation step for multiplex sample loading on the flow cells. The flow cells were sequenced as 101×2 paired-end reads on an Illumina HiSeq 4000

value: Duodenal mucosa (biopsy)

tag: disease state

value: Healthy Control


title: 9-008 (miRNA-Seq)


title: 9-006 (miRNA-Seq)


title: 11-004 (miRNA-Seq)


title: nxid6943: WT_Intestinal_organoids_Aniracetam_2_days_treatment_rep_1

tag: strain


title: nxid8770: WT_Intestinal_organoids_Anethole_trithione_2_days_treatment_rep_2

tag: tissue


title: nxid10065: WT_Intestinal_organoids_Anethole_trithione_2_days_treatment_rep_3

tag: genotype


title: nxid6944: WT_Intestinal_organoids_Anethole_trithione_2_days_treatment_rep_1

tag: drug treatment


title: 9-004 (miRNA-Seq)


title: 10-005 (miRNA-Seq)


title: 12-006 (miRNA-Seq)


title: 9-002 (miRNA-Seq)


title: 10-004 (miRNA-Seq)


title: nxid8759: WT_Intestinal_organoids_Amlodipine_2_days_treatment_rep_2

value: Amlodipine

tag: treatment, days


title: 10-003 (miRNA-Seq)


title: nxid6932: WT_Intestinal_organoids_Amlodipine_2_days_treatment_rep_1

tag: plate number


title: nxid8050: WT_Intestinal_organoids_Amlexanox_2_days_treatment_rep_1

value: Amlexanox


title: nxid9633: WT_Intestinal_organoids_Amlexanox_2_days_treatment_rep_3


title: 11-003 (miRNA-Seq)


title: 12-005 (miRNA-Seq)


title: nxid8817: WT_Intestinal_organoids_Amlexanox_2_days_treatment_rep_2


title: 11-001 (miRNA-Seq)


title: nxid8041: WT_Intestinal_organoids_Aminopurine_2_days_treatment_rep_1

value: Aminopurine


title: 12-001 (miRNA-Seq)


title: nxid9624: WT_Intestinal_organoids_Aminopurine_2_days_treatment_rep_3


title: nxid10593: WT_Intestinal_organoids_Amlexanox_2_days_treatment_rep_4


title: 12-003 (miRNA-Seq)


title: 12-002 (miRNA-Seq)


title: 9-005 (miRNA-Seq)


title: nxid8729: WT_Intestinal_organoids_Amoxapine_2_days_treatment_rep_2

value: Amoxapine


title: nxid10584: WT_Intestinal_organoids_Aminopurine_2_days_treatment_rep_4


title: nxid10024: WT_Intestinal_organoids_Amoxapine_2_days_treatment_rep_3


title: 10-002 (miRNA-Seq)


title: nxid6903: WT_Intestinal_organoids_Amoxapine_2_days_treatment_rep_1


title: 11-002 (miRNA-Seq)


title: nxid8808: WT_Intestinal_organoids_Aminopurine_2_days_treatment_rep_2


title: nxid8421: WT_Intestinal_organoids_Amikacin_2_days_treatment_rep_1

value: Amikacin


title: 12-004 (miRNA-Seq)


title: 9-001 (miRNA-Seq)


title: 1-019 (miRNA-Seq)

value: Diabetes Mellitus


title: 2-011 (miRNA-Seq)


title: nxid9665: WT_Intestinal_organoids_Amfepramone_2_days_treatment_rep_3

value: Intestine

value: Amfepramone


title: 2-010 (miRNA-Seq)


title: nxid8047: WT_Intestinal_organoids_Ambrisentan_2_days_treatment_rep_1

value: Ambrisentan


title: nxid10625: WT_Intestinal_organoids_Amfepramone_2_days_treatment_rep_4


title: nxid8850: WT_Intestinal_organoids_Amfepramone_2_days_treatment_rep_2


title: nxid9630: WT_Intestinal_organoids_Ambrisentan_2_days_treatment_rep_3


title: 1-015 (miRNA-Seq)


title: 1-016 (miRNA-Seq)


title: 1-017 (miRNA-Seq)


title: 2-008 (miRNA-Seq)


title: nxid8038: WT_Intestinal_organoids_Altrenogest_2_days_treatment_rep_1

value: Altrenogest


title: 2-009 (miRNA-Seq)


title: nxid10590: WT_Intestinal_organoids_Ambrisentan_2_days_treatment_rep_4

value: WT


title: nxid10100: WT_Intestinal_organoids_Amikacin_2_days_treatment_rep_2


title: 2-007 (miRNA-Seq)


title: 1-020 (miRNA-Seq)


title: nxid10581: WT_Intestinal_organoids_Altrenogest_2_days_treatment_rep_4


title: 4-001 (miRNA-Seq)


title: nxid10012: WT_Intestinal_organoids_Alprostadil_2_days_treatment_rep_3

value: Alprostadil


title: 3-007 (miRNA-Seq)


title: nxid8805: WT_Intestinal_organoids_Altrenogest_2_days_treatment_rep_2


title: nxid9621: WT_Intestinal_organoids_Altrenogest_2_days_treatment_rep_3


title: nxid6891: WT_Intestinal_organoids_Alprostadil_2_days_treatment_rep_1


title: 3-006 (miRNA-Seq)


title: 1-018 (miRNA-Seq)


title: nxid8082: WT_Intestinal_organoids_Amfepramone_2_days_treatment_rep_1


title: 3-005 (miRNA-Seq)


title: nxid8055: WT_Intestinal_organoids_Alprenolol_2_days_treatment_rep_1

value: Alprenolol


title: nxid8717: WT_Intestinal_organoids_Alprostadil_2_days_treatment_rep_2


title: 2-005 (miRNA-Seq)


title: nxid9638: WT_Intestinal_organoids_Alprenolol_2_days_treatment_rep_3


title: nxid8822: WT_Intestinal_organoids_Alprenolol_2_days_treatment_rep_2


title: 2-006 (miRNA-Seq)


title: nxid8815: WT_Intestinal_organoids_Ambrisentan_2_days_treatment_rep_2


title: 1-014 (miRNA-Seq)


title: 2-003 (miRNA-Seq)


title: nxid8746: WT_Intestinal_organoids_Allopurinol_2_days_treatment_rep_2

value: Allopurinol


title: 1-013 (miRNA-Seq)


title: nxid10041: WT_Intestinal_organoids_Allopurinol_2_days_treatment_rep_3


title: nxid10598: WT_Intestinal_organoids_Alprenolol_2_days_treatment_rep_4


title: 4-002 (miRNA-Seq)


title: 1-012 (miRNA-Seq)


title: nxid6920: WT_Intestinal_organoids_Allopurinol_2_days_treatment_rep_1


title: 2-002 (miRNA-Seq)


title: nxid10492: WT_Intestinal_organoids_Alfadolone_2_days_treatment_rep_4

value: Alfadolone


title: 1-011 (miRNA-Seq)

value: Duodenal mucosa (biopsy)


title: nxid10300: WT_Intestinal_organoids_Alfadolone_2_days_treatment_rep_3


title: 1-009 (miRNA-Seq)


title: nxid8621: WT_Intestinal_organoids_Alfadolone_2_days_treatment_rep_2


title: 3-004 (miRNA-Seq)


title: 1-010 (miRNA-Seq)


title: nxid6699: WT_Intestinal_organoids_Alfadolone_2_days_treatment_rep_1


title: nxid10029: WT_Intestinal_organoids_Alendronate_2_days_treatment_rep_3

value: Alendronate


title: 1-006 (miRNA-Seq)


title: 1-008 (miRNA-Seq)


title: 1-007 (miRNA-Seq)


title: nxid6908: WT_Intestinal_organoids_Alendronate_2_days_treatment_rep_1


title: 2-001 (miRNA-Seq)


title: nxid12465: AKP_Intestinal_organoids_Albendazole_1_days_treatment_rep_1

value: AKP

value: Albendazole


title: nxid12499: AKP_Intestinal_organoids_Albendazole_2_days_treatment_rep_2


title: nxid12438: AKP_Intestinal_organoids_Albendazole_2_days_treatment_rep_1


title: 3-003 (miRNA-Seq)


title: 1-003 (miRNA-Seq)


title: 1-004 (miRNA-Seq)


title: nxid8031: WT_Intestinal_organoids_Albendazole_2_days_treatment_rep_1


title: nxid9614: WT_Intestinal_organoids_Albendazole_2_days_treatment_rep_3


title: 3-002 (miRNA-Seq)


title: nxid8798: WT_Intestinal_organoids_Albendazole_2_days_treatment_rep_2


title: nxid8026: WT_Intestinal_organoids_Adapalene_2_days_treatment_rep_1

value: Adapalene


title: 1-002 (miRNA-Seq)


title: nxid10574: WT_Intestinal_organoids_Albendazole_2_days_treatment_rep_4


title: 3-001 (miRNA-Seq)


title: nxid8734: WT_Intestinal_organoids_Alendronate_2_days_treatment_rep_2


title: 1-001 (miRNA-Seq)


title: nxid9609: WT_Intestinal_organoids_Adapalene_2_days_treatment_rep_3


title: nxid10569: WT_Intestinal_organoids_Adapalene_2_days_treatment_rep_4


title: nxid8793: WT_Intestinal_organoids_Adapalene_2_days_treatment_rep_2


title: nxid8768: WT_Intestinal_organoids_Acipimox_2_days_treatment_rep_2

value: Acipimox


title: 9-008 (RNA-Seq)

data_processing:
TopHat for alignment
FeatureCounts to quantify expression
Genome_build: hg38
Supplementary_files_format_and_content: tsv format containg raw gene counts and RPKM normalize expression values

value: Healthy Control


title: 9-009 (RNA-Seq)


title: 9-006 (RNA-Seq)


title: nxid10063: WT_Intestinal_organoids_Acipimox_2_days_treatment_rep_3


title: 1-005 (miRNA-Seq)

value: Diabetes Mellitus


title: nxid6942: WT_Intestinal_organoids_Acipimox_2_days_treatment_rep_1

value: Intestine


title: 9-005 (RNA-Seq)


title: 11-004 (RNA-Seq)


title: 9-004 (RNA-Seq)


title: 10-005 (RNA-Seq)


title: 9-002 (RNA-Seq)


title: 12-006 (RNA-Seq)


title: nxid8485: WT_Intestinal_organoids_Acetohexamide_2_days_treatment_rep_1

value: Acetohexamide


title: nxid10495: WT_Intestinal_organoids_Acenocoumarol_2_days_treatment_rep_4

value: Acenocoumarol


title: 10-004 (RNA-Seq)


title: nxid10164: WT_Intestinal_organoids_Acetohexamide_2_days_treatment_rep_2


title: nxid10303: WT_Intestinal_organoids_Acenocoumarol_2_days_treatment_rep_3


title: nxid8624: WT_Intestinal_organoids_Acenocoumarol_2_days_treatment_rep_2


title: 12-005 (RNA-Seq)


title: 10-003 (RNA-Seq)


title: 11-001 (RNA-Seq)


title: 11-003 (RNA-Seq)


title: nxid6931: WT_Intestinal_organoids_Acarbose_2_days_treatment_rep_1

value: Acarbose


title: 12-001 (RNA-Seq)


title: nxid8722: WT_Intestinal_organoids_Acetylsalicylic_2_days_treatment_rep_2

value: WT

value: Acetylsalicylic


title: OBT2D4_S14

city: Milan

first: Letizia

last: Messa

address: Piazza Leonardo Da Vinci 32

department: Electronics, Informatics and Bioengineering

country: Italy

institute: Politecnico di Milano

data_processing:
FastQ files were generated via llumina bcl2fastq2 Version 2.17.1.14
Gene and transcript intensities were computed using STAR/RSEM software using Gencode Release m24 (GRCm38) as a reference, using the “-strandness forward” option. Transcript abundance was obtained using the BlueBee® Genomics Platform (Lexogen). Differential expression analysis for mRNA was performed using R package DESeq2
Genome_build: M24
Supplementary_files_format_and_content: BlueBee output:gene_ID, gene_name, locus,  frags_locus, frags_expt, FPKM_THN, comp_frags_locus, comp_frags_expt, FPKM_CHN, status

source_name: Subcutaneous Adipose Tissue

growth_protocol: Biopsies of SAT were collected from a total of 20 subjects: 5 healthy normal weight women (CTRL, age 37 ± 6.7 years, BMI 24.3 ± 0.9 kg/m2), 5 obese women (OBF, age 41 ± 12.5 years, BMI 38.2 ± 4.6 kg/m2), 5 obese women with T2D (OBT2D; age 54.6 ± 14.9 years, BMI 38.1 ± 11.8 kg/m2) and 5 obese men (OBM, age 42.4 ± 6.58 years, BMI 36.9 ± 3.5 kg/m2). Each collected biopsy was weighed and stored in 1 ml of DMEM (Invitrogen Corporation, Jefferson City, MO) supplemented with 2.5% Bovine Serum Albumin (Sigma, St. Louis, MO) per gram of collected tissue.

extract_protocol:
Approximately 500 mg of frozen SAT was homogenized in RLT buffer (Qiagen). RNA from SAT was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer protocol and samples were then treated with the RNase-Free DNase Set (Qiagen). Concentration and quality of the extracted RNA were determined by the NanoDropH ND-1000 spectrophotometer (NanoDrop Technologies, USA) and RNA integrity verified by gel-electrophoresis.
RNA-seq libraries were prepared with the CORALL Total RNA-Seq Library Prep Kit (Lexogen) using 150 ng total RNAs from 5 healthy women, 5 obese women, 5 obese women with T2D and 5 obese men. The RiboCop rRNA Depletion Kit (Lexogen) was used to remove rRNA. Qualities of sequencing libraries were assessed with D1000 ScreenTape Assay using the 4200 TapeStation System (Agilent) and quantified with Qubit™ dsDNA HS Assay Kit (Invitrogen). RNA processing was carried out using Illumina NextSeq 500 Sequencing.

treatment_protocol: The biopsy was immediately transferred to the laboratory and processed. A fragment of the whole adipose tissue biopsy was immediately frozen in liquid nitrogen for RNA extraction.

tag: gender

value: female

value: age 54.6 ± 14.9 years

tag: bmi


title: 12-003 (RNA-Seq)


title: nxid6702: WT_Intestinal_organoids_Acenocoumarol_2_days_treatment_rep_1


title: OBT2D2_S12


title: OBT2D5_S15


title: nxid10017: WT_Intestinal_organoids_Acetylsalicylic_2_days_treatment_rep_3


title: nxid10052: WT_Intestinal_organoids_Acarbose_2_days_treatment_rep_2


title: OBT2D1_S11


title: 10-002 (RNA-Seq)


title: 12-002 (RNA-Seq)


title: OBT2D3_S13


title: 12-004 (RNA-Seq)


title: nxid6896: WT_Intestinal_organoids_Acetylsalicylic_2_days_treatment_rep_1


title: 9-001 (RNA-Seq)


title: 1-020 (RNA-Seq)


title: OBM5_S20

value: male

value: age 42.4 ± 6.58 years


title: 2-011 (RNA-Seq)

value: Duodenal mucosa (biopsy)


title: 2-010 (RNA-Seq)


title: 1-019 (RNA-Seq)


title: OBM4_S19


title: 1-018 (RNA-Seq)


title: OBM3_S18


title: OBM1_S16


title: OBM2_S17


title: 11-002 (RNA-Seq)


title: 1-016 (RNA-Seq)


title: 1-017 (RNA-Seq)


title: OBF3_S8

value: age 41 ± 12.5 years


title: 1-015 (RNA-Seq)


title: OBF4_S9


title: OBF2_S7


title: OBF1_S6


title: OBF5_S10


title: 4-002 (RNA-Seq)


title: 2-009 (RNA-Seq)


title: 2-008 (RNA-Seq)


title: NW4_S4

value: age 37 ± 6.7 years


title: NW3_S3


title: NW5_S5


title: NW2_S2