title: Control ChIP-seq from K562 (ENCLB843YVL)

description:
https://www.encodeproject.org/experiments/ENCSR956YUD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR956YUD
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB843YVL
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting DLX4

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: ATCC

value: ENCBS752MQM at ENCODE; https://www.encodeproject.org/ENCBS752MQM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: Control ChIP-seq from K562 (ENCLB893BXZ)

status: Public on Mar 30 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR385NZN/
***************
biological replicate number: 1
technical replicate number: 1
description: K562 immortalized cell line stably expressing C-terminal eGFP-SMAD3 fusion protein.
experiment encode accession: ENCSR385NZN
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB893BXZ
size range: 450-650

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting SMAD3

tag: line

tag: description

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to SMAD3.

tag: biosample encode accession

tag: Sex

tag: health state

tag: dev stage

value: adult

tag: age

tag: lab

tag: source

value: Kevin White

tag: link

value: ENCBS458GUT at ENCODE; https://www.encodeproject.org/ENCBS458GUT/


title: Control ChIP-seq from A549 (ENCLB880TLM)

description:
https://www.encodeproject.org/experiments/ENCSR382YXI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human A549
experiment encode accession: ENCSR382YXI
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB880TLM
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting HOXB5

value: male

value: 58 year

value: Michael Snyder

value: ENCBS265GUL at ENCODE; https://www.encodeproject.org/ENCBS265GUL/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Control ChIP-seq from K562 (ENCLB295SKC)

description:
https://www.encodeproject.org/experiments/ENCSR194QBX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR194QBX
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB295SKC
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting E2F3

value: cell line

value: ENCBS869ANS at ENCODE; https://www.encodeproject.org/ENCBS869ANS/


title: Control ChIP-seq from HepG2 (ENCLB515YRT)

description:
https://www.encodeproject.org/experiments/ENCSR592WMK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human HepG2
experiment encode accession: ENCSR592WMK
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB515YRT
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens HepG2 cell line

value: hepatocellular carcinoma

value: child

value: 15 year

value: ENCBS304MNP at ENCODE; https://www.encodeproject.org/ENCBS304MNP/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: Control ChIP-seq from A549 (ENCLB186TDE)

description:
https://www.encodeproject.org/experiments/ENCSR941GEM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human A549
experiment encode accession: ENCSR941GEM
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB186TDE
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting NR5A2

value: Michael Snyder, Stanford

value: ENCBS216TQT at ENCODE; https://www.encodeproject.org/ENCBS216TQT/


title: Control ChIP-seq from A549 (ENCLB166BKS)

description:
https://www.encodeproject.org/experiments/ENCSR928HJI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human A549
experiment encode accession: ENCSR928HJI
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB166BKS
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line

value: adult

value: ATCC

value: ENCBS876GOD at ENCODE; https://www.encodeproject.org/ENCBS876GOD/


title: Control ChIP-seq from K562 (ENCLB966KZG)

description:
https://www.encodeproject.org/experiments/ENCSR193DQJ/
***************
biological replicate number: 1
technical replicate number: 1
description: K562 immortalized cell line stably expressing C-terminal eGFP-HMG20A fusion protein.
experiment encode accession: ENCSR193DQJ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB966KZG
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting HMG20A

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to HMG20A.

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Kevin White

value: ENCBS064MUU at ENCODE; https://www.encodeproject.org/ENCBS064MUU/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: Control ChIP-seq from MCF-7 (ENCLB750TTS)

description:
https://www.encodeproject.org/experiments/ENCSR925PLG/
***************
biological replicate number: 1
technical replicate number: 1
description: MCF7 immortalized cell line stably expressing C-terminal eGFP-OVOL1 fusion protein.
experiment encode accession: ENCSR925PLG
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB750TTS
size range: 450-650

source_name: Homo sapiens MCF-7 cell line genetically modified (insertion) using CRISPR targeting OVOL1

value: cell line

value: MCF7 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to OVOL1.

value: breast cancer (adenocarcinoma)

value: 69 year

value: Michael Snyder

value: ENCBS294KWE at ENCODE; https://www.encodeproject.org/ENCBS294KWE/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: Control ChIP-seq from K562 (ENCLB388ILD)

description:
https://www.encodeproject.org/experiments/ENCSR926XXG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR926XXG
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB388ILD
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line

value: adult

value: Michael Snyder, Stanford

value: ENCBS890CRI at ENCODE; https://www.encodeproject.org/ENCBS890CRI/


title: Control ChIP-seq from K562 (ENCLB276OCC)

description:
https://www.encodeproject.org/experiments/ENCSR185VVF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR185VVF
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB276OCC
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZFP30

tag: passage number

value: ENCBS635QOC at ENCODE; https://www.encodeproject.org/ENCBS635QOC/


title: Control ChIP-seq from K562 (ENCLB462DNT)

description:
https://www.encodeproject.org/experiments/ENCSR918YCV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR918YCV
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB462DNT
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF239

value: female

value: ENCBS732LCS at ENCODE; https://www.encodeproject.org/ENCBS732LCS/


title: Control ChIP-seq from K562 (ENCLB524IAG)

description:
https://www.encodeproject.org/experiments/ENCSR899URK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR899URK
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB524IAG
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF257

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS161NFC at ENCODE; https://www.encodeproject.org/ENCBS161NFC/


title: Control ChIP-seq from HepG2 (ENCLB231JJD)

description:
https://www.encodeproject.org/experiments/ENCSR172OXO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human HepG2
experiment encode accession: ENCSR172OXO
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB231JJD
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: ATCC

value: ENCBS507XOA at ENCODE; https://www.encodeproject.org/ENCBS507XOA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: Control ChIP-seq from K562 (ENCLB611DYS)

description:
https://www.encodeproject.org/experiments/ENCSR174APY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR174APY
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB611DYS
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting TBX18

value: cell line

value: Kevin White

value: ENCBS197NYS at ENCODE; https://www.encodeproject.org/ENCBS197NYS/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: Control ChIP-seq from A549 (ENCLB352XXP)

description:
https://www.encodeproject.org/experiments/ENCSR175NUT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human A549
experiment encode accession: ENCSR175NUT
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB352XXP
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting FOXS1

value: adult

value: 58 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS961ZWR at ENCODE; https://www.encodeproject.org/ENCBS961ZWR/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Control ChIP-seq from A549 (ENCLB176HRJ)

description:
https://www.encodeproject.org/experiments/ENCSR542LGX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human A549
experiment encode accession: ENCSR542LGX
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB176HRJ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: male

value: ENCBS250OQU at ENCODE; https://www.encodeproject.org/ENCBS250OQU/


title: Control ChIP-seq from K562 (ENCLB088OAO)

description:
https://www.encodeproject.org/experiments/ENCSR177ADZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR177ADZ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB088OAO
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting HOMEZ

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS774KYG at ENCODE; https://www.encodeproject.org/ENCBS774KYG/


title: Control ChIP-seq from GM23338 (ENCLB712EDJ)

description:
https://www.encodeproject.org/experiments/ENCSR533JIB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human GM23338
experiment encode accession: ENCSR533JIB
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB712EDJ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens GM23338 cell line genetically modified (insertion) using CRISPR targeting CREB1

value: ENCBS012RXK at ENCODE; https://www.encodeproject.org/ENCBS012RXK/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Control ChIP-seq from K562 (ENCLB788ZGO)

description:
https://www.encodeproject.org/experiments/ENCSR905GXX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR905GXX
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB788ZGO
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZKSCAN3

value: cell line

value: Kevin White

value: ENCBS479UUJ at ENCODE; https://www.encodeproject.org/ENCBS479UUJ/


title: Control ChIP-seq from K562 (ENCLB087GDU)

description:
https://www.encodeproject.org/experiments/ENCSR532WSQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR532WSQ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB087GDU
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: adult

value: ATCC

value: ENCBS738HDT at ENCODE; https://www.encodeproject.org/ENCBS738HDT/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: Control ChIP-seq from K562 (ENCLB115NHT)

description:
https://www.encodeproject.org/experiments/ENCSR525VRV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR525VRV
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB115NHT
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF169

value: Michael Snyder, Stanford

value: ENCBS242ETB at ENCODE; https://www.encodeproject.org/ENCBS242ETB/


title: Control ChIP-seq from A549 (ENCLB743VMH)

description:
https://www.encodeproject.org/experiments/ENCSR348EIP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human A549
experiment encode accession: ENCSR348EIP
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB743VMH
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting PBX1

value: male

value: 58 year

value: Michael Snyder

value: ENCBS696ZPT at ENCODE; https://www.encodeproject.org/ENCBS696ZPT/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Control ChIP-seq from K562 (ENCLB688ZFS)

description:
https://www.encodeproject.org/experiments/ENCSR144PFT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR144PFT
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB688ZFS
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting KDM2B

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS421YVO at ENCODE; https://www.encodeproject.org/ENCBS421YVO/


title: Control ChIP-seq from HepG2 (ENCLB334TBO)

description:
https://www.encodeproject.org/experiments/ENCSR693GOR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR693GOR
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-26
lab: Richard Myers, HAIB
library encode accession: ENCLB334TBO
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line

value: cell line

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS172DLT at ENCODE; https://www.encodeproject.org/ENCBS172DLT/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: Control ChIP-seq from GM23338 (ENCLB933LOD)

description:
https://www.encodeproject.org/experiments/ENCSR883NMO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human GM23338
experiment encode accession: ENCSR883NMO
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB933LOD
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens GM23338 cell line genetically modified (insertion) using CRISPR targeting ZNF462

value: male

value: adult

value: Michael Snyder, Stanford

value: ENCBS956POA at ENCODE; https://www.encodeproject.org/ENCBS956POA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Control ChIP-seq from SK-N-SH (ENCLB997HKD)

description:
https://www.encodeproject.org/experiments/ENCSR697UDH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on SK-N-SH
experiment encode accession: ENCSR697UDH
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-26
lab: Richard Myers, HAIB
library encode accession: ENCLB997HKD
fragmentation methods: sonication (generic)

source_name: Homo sapiens SK-N-SH cell line

value: SK-N-SH

value: female

value: Metastatic neuroblastoma from bone marrow

value: 4 year

value: ENCBS011NGY at ENCODE; https://www.encodeproject.org/ENCBS011NGY/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: ATAC-seq from mucosa of gallbladder (ENCLB501MJZ)

description:
https://www.encodeproject.org/experiments/ENCSR695FLC/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human mucosa of gallbladder
experiment encode accession: ENCSR695FLC
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB501MJZ
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female child (16 years) mucosa of gallbladder tissue, preserved by flash-freezing

value: mucosa of gallbladder

value: tissue

value: DM:no; HTN:no; CAD:no

value: child

value: 16 year

value: Yiing Lin, MD, PhD

value: ENCBS014VBU at ENCODE; https://www.encodeproject.org/ENCBS014VBU/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: ATAC-seq from mucosa of gallbladder (ENCLB723WFD)

description:
https://www.encodeproject.org/experiments/ENCSR695FLC/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human mucosa of gallbladder
experiment encode accession: ENCSR695FLC
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB723WFD
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: Michael Snyder, Stanford


title: Control ChIP-seq from HepG2 (ENCLB142EBC)

description:
https://www.encodeproject.org/experiments/ENCSR690IYP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR690IYP
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-26
lab: Richard Myers, HAIB
library encode accession: ENCLB142EBC
fragmentation methods: sonication (generic)

value: cell line

value: male

value: hepatocellular carcinoma

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS127OTO at ENCODE; https://www.encodeproject.org/ENCBS127OTO/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ATAC-seq from right lobe of liver (ENCLB306JUA)

description:
https://www.encodeproject.org/experiments/ENCSR685ZMP/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human right lobe of liver
experiment encode accession: ENCSR685ZMP
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB306JUA
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (41 years) right lobe of liver tissue, preserved by cryopreservation

value: right lobe of liver

value: Child biosample for Chang/Greenleaf lab

value: female

value: adult

value: 41 year

value: ENCBS481IEQ at ENCODE; https://www.encodeproject.org/ENCBS481IEQ/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Control ChIP-seq from K562 (ENCLB226YSC)

description:
https://www.encodeproject.org/experiments/ENCSR182QFE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR182QFE
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB226YSC
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ARID3B

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Kevin White

value: ENCBS804OQW at ENCODE; https://www.encodeproject.org/ENCBS804OQW/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: Control ChIP-seq from K562 (ENCLB123COW)

description:
https://www.encodeproject.org/experiments/ENCSR167ONN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR167ONN
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB123COW
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting KLF6

value: cell line

value: Michael Snyder, Stanford

value: ENCBS911XLZ at ENCODE; https://www.encodeproject.org/ENCBS911XLZ/


title: ATAC-seq from right lobe of liver (ENCLB096KKD)

description:
https://www.encodeproject.org/experiments/ENCSR685ZMP/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human right lobe of liver
experiment encode accession: ENCSR685ZMP
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB096KKD
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: tissue

value: DM:no; HTN:no; CAD:no

value: Yiing Lin, MD, PhD


title: ATAC-seq from left lung (ENCLB868GIF)

description:
https://www.encodeproject.org/experiments/ENCSR682ETE/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human left lung
experiment encode accession: ENCSR682ETE
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB868GIF
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female child (16 years) left lung tissue, preserved by cryopreservation

value: left lung

value: child

value: 16 year

value: ENCBS493WII at ENCODE; https://www.encodeproject.org/ENCBS493WII/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: Control ChIP-seq from K562 (ENCLB806KML)

description:
https://www.encodeproject.org/experiments/ENCSR134JXS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR134JXS
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB806KML
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting IFI16

value: female

value: adult

value: ENCBS040QKU at ENCODE; https://www.encodeproject.org/ENCBS040QKU/


title: ATAC-seq from left lung (ENCLB526UTI)

description:
https://www.encodeproject.org/experiments/ENCSR682ETE/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human left lung
experiment encode accession: ENCSR682ETE
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB526UTI
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000


title: ATAC-seq from adrenal gland (ENCLB941IVS)

description:
https://www.encodeproject.org/experiments/ENCSR651SOJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human adrenal gland
experiment encode accession: ENCSR651SOJ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB941IVS
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (47 years) adrenal gland tissue, preserved by cryopreservation

value: adrenal gland

value: DM:yes; HTN:yes; CAD:no

value: 47 year

value: ENCBS382FUV at ENCODE; https://www.encodeproject.org/ENCBS382FUV/

value: Derived from ENCODE donor ENCDO528BHB; https://www.encodeproject.org/ENCDO528BHB/


title: ATAC-seq from left lobe of liver (ENCLB556ZGU)

description:
https://www.encodeproject.org/experiments/ENCSR624ODL/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human left lobe of liver
experiment encode accession: ENCSR624ODL
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB556ZGU
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (61 years) left lobe of liver tissue, preserved by cryopreservation

value: left lobe of liver

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: 61 year

value: Michael Snyder, Stanford

value: ENCBS987FNC at ENCODE; https://www.encodeproject.org/ENCBS987FNC/

value: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/


title: Control ChIP-seq from GM23338 (ENCLB997BCR)

description:
https://www.encodeproject.org/experiments/ENCSR518DKF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human GM23338
experiment encode accession: ENCSR518DKF
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB997BCR
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens GM23338 cell line

value: cell line

value: male

value: 53 year

value: George Church

value: ENCBS882PAQ at ENCODE; https://www.encodeproject.org/ENCBS882PAQ/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ATAC-seq from right lobe of liver (ENCLB589CNK)

description:
https://www.encodeproject.org/experiments/ENCSR607BTF/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human right lobe of liver
experiment encode accession: ENCSR607BTF
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB589CNK
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens male adult (45 years) right lobe of liver tissue, preserved by cryopreservation

value: right lobe of liver

value: tissue

value: DM:no; HTN:yes; CAD:no

value: adult

value: 45 year

value: Yiing Lin, MD, PhD

value: ENCBS981KHA at ENCODE; https://www.encodeproject.org/ENCBS981KHA/

value: Derived from ENCODE donor ENCDO757VPQ; https://www.encodeproject.org/ENCDO757VPQ/


title: ATAC-seq from left lobe of liver (ENCLB877UAL)

description:
https://www.encodeproject.org/experiments/ENCSR624ODL/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human left lobe of liver
experiment encode accession: ENCSR624ODL
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB877UAL
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: left lobe of liver

value: female

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: 61 year

value: Michael Snyder, Stanford


title: Control ChIP-seq from HepG2 (ENCLB107SHZ)

description:
https://www.encodeproject.org/experiments/ENCSR615JHA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR615JHA
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-26
lab: Richard Myers, HAIB
library encode accession: ENCLB107SHZ
fragmentation methods: sonication (generic)

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS829IPI at ENCODE; https://www.encodeproject.org/ENCBS829IPI/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ATAC-seq from ovary (ENCLB396PCY)

description:
https://www.encodeproject.org/experiments/ENCSR996ZCR/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human ovary
experiment encode accession: ENCSR996ZCR
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB396PCY
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (46 years) ovary tissue, preserved by cryopreservation

value: ovary

value: tissue

value: DM:no; HTN:no; CAD:no

value: adult

value: 46 year

value: Yiing Lin, MD, PhD

value: ENCBS756QHV at ENCODE; https://www.encodeproject.org/ENCBS756QHV/

value: Derived from ENCODE donor ENCDO411EVD; https://www.encodeproject.org/ENCDO411EVD/


title: ATAC-seq from right lobe of liver (ENCLB115ETJ)

description:
https://www.encodeproject.org/experiments/ENCSR607BTF/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human right lobe of liver
experiment encode accession: ENCSR607BTF
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB115ETJ
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: right lobe of liver

value: DM:no; HTN:yes; CAD:no

value: 45 year

value: Michael Snyder, Stanford

value: ENCBS981KHA at ENCODE; https://www.encodeproject.org/ENCBS981KHA/

value: Derived from ENCODE donor ENCDO757VPQ; https://www.encodeproject.org/ENCDO757VPQ/


title: ATAC-seq from ovary (ENCLB102TXL)

description:
https://www.encodeproject.org/experiments/ENCSR996ZCR/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human ovary
experiment encode accession: ENCSR996ZCR
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB102TXL
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: female


title: Control ChIP-seq from K562 (ENCLB090DRZ)

description:
https://www.encodeproject.org/experiments/ENCSR532KDW/
***************
biological replicate number: 1
technical replicate number: 1
description: K562 immortalized cell line stably expressing C-terminal eGFP-TEAD1 fusion protein.
experiment encode accession: ENCSR532KDW
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB090DRZ
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting TEAD1

value: cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to TEAD1.

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Kevin White

value: ENCBS456FWN at ENCODE; https://www.encodeproject.org/ENCBS456FWN/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from upper lobe of right lung (ENCLB853USO)

description:
https://www.encodeproject.org/experiments/ENCSR990NNX/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human upper lobe of right lung
experiment encode accession: ENCSR990NNX
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB853USO
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens male adult (60 years) upper lobe of right lung tissue, preserved by cryopreservation

value: upper lobe of right lung

value: tissue

value: male

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: adult

value: 60 year

value: Yiing Lin, MD, PhD

value: ENCBS423PNW at ENCODE; https://www.encodeproject.org/ENCBS423PNW/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: ATAC-seq from left colon (ENCLB347CEE)

description:
https://www.encodeproject.org/experiments/ENCSR600ZHS/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human left colon
experiment encode accession: ENCSR600ZHS
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB347CEE
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (46 years) left colon tissue, preserved by cryopreservation

value: left colon

value: female

value: DM:no; HTN:no; CAD:no

value: 46 year

value: Michael Snyder, Stanford

value: ENCBS575IQJ at ENCODE; https://www.encodeproject.org/ENCBS575IQJ/

value: Derived from ENCODE donor ENCDO411EVD; https://www.encodeproject.org/ENCDO411EVD/


title: ATAC-seq from colonic mucosa (ENCLB361VLL)

description:
https://www.encodeproject.org/experiments/ENCSR970UNF/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human colonic mucosa
experiment encode accession: ENCSR970UNF
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB361VLL
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (41 years) colonic mucosa tissue, preserved by flash-freezing

value: colonic mucosa

value: 41 year

value: ENCBS776QSW at ENCODE; https://www.encodeproject.org/ENCBS776QSW/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Control ChIP-seq from A549 (ENCLB117XVA)

description:
https://www.encodeproject.org/experiments/ENCSR514NTD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human A549
experiment encode accession: ENCSR514NTD
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB117XVA
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line

value: cell line

value: male

value: 58 year

value: ATCC

value: ENCBS266HTE at ENCODE; https://www.encodeproject.org/ENCBS266HTE/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ATAC-seq from colonic mucosa (ENCLB717RFD)

description:
https://www.encodeproject.org/experiments/ENCSR970UNF/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human colonic mucosa
experiment encode accession: ENCSR970UNF
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB717RFD
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (41 years) colonic mucosa tissue, preserved by cryopreservation

value: tissue

value: adult

value: Yiing Lin, MD, PhD

value: ENCBS251FRP at ENCODE; https://www.encodeproject.org/ENCBS251FRP/


title: Control ChIP-seq from A549 (ENCLB870UNR)

description:
https://www.encodeproject.org/experiments/ENCSR510MWR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human A549
experiment encode accession: ENCSR510MWR
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB870UNR
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting HOXA7

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS406LLL at ENCODE; https://www.encodeproject.org/ENCBS406LLL/


title: ATAC-seq from heart left ventricle (ENCLB824CNG)

description:
https://www.encodeproject.org/experiments/ENCSR399OSE/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human heart left ventricle
experiment encode accession: ENCSR399OSE
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB824CNG
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (47 years) heart left ventricle tissue, preserved by cryopreservation

value: heart left ventricle

value: female

value: DM:yes; HTN:yes; CAD:no

value: 47 year

value: ENCBS482OVS at ENCODE; https://www.encodeproject.org/ENCBS482OVS/

value: Derived from ENCODE donor ENCDO528BHB; https://www.encodeproject.org/ENCDO528BHB/


title: ATAC-seq from colonic mucosa (ENCLB558HSL)

description:
https://www.encodeproject.org/experiments/ENCSR970UNF/
***************
biological replicate number: 2
technical replicate number: 2
description: ATAC-seq on human colonic mucosa
experiment encode accession: ENCSR970UNF
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB558HSL
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: colonic mucosa

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: ATAC-seq from adrenal gland (ENCLB374EPF)

description:
https://www.encodeproject.org/experiments/ENCSR651SOJ/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human adrenal gland
experiment encode accession: ENCSR651SOJ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB374EPF
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: adrenal gland

value: tissue

value: ENCBS382FUV at ENCODE; https://www.encodeproject.org/ENCBS382FUV/


title: Control ChIP-seq from K562 (ENCLB746HWB)

description:
https://www.encodeproject.org/experiments/ENCSR953NJZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR953NJZ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-26
lab: Richard Myers, HAIB
library encode accession: ENCLB746HWB
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS756IKM at ENCODE; https://www.encodeproject.org/ENCBS756IKM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from colonic mucosa (ENCLB647BMK)

description:
https://www.encodeproject.org/experiments/ENCSR970UNF/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human colonic mucosa
experiment encode accession: ENCSR970UNF
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB647BMK
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: female

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS776QSW at ENCODE; https://www.encodeproject.org/ENCBS776QSW/


title: ATAC-seq from upper lobe of right lung (ENCLB488OAO)

description:
https://www.encodeproject.org/experiments/ENCSR990NNX/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human upper lobe of right lung
experiment encode accession: ENCSR990NNX
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB488OAO
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: upper lobe of right lung

value: male

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: 60 year

value: ENCBS423PNW at ENCODE; https://www.encodeproject.org/ENCBS423PNW/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: ATAC-seq from ovary (ENCLB655WGV)

description:
https://www.encodeproject.org/experiments/ENCSR392UJM/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human ovary
experiment encode accession: ENCSR392UJM
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-09-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB655WGV
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (61 years) ovary tissue, preserved by cryopreservation

value: ovary

value: tissue

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: 61 year

value: ENCBS364GNL at ENCODE; https://www.encodeproject.org/ENCBS364GNL/

value: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/


title: ATAC-seq from ovary (ENCLB053UVB)

description:
https://www.encodeproject.org/experiments/ENCSR392UJM/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human ovary
experiment encode accession: ENCSR392UJM
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-09-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB053UVB
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: adult


title: ATAC-seq from left cardiac atrium (ENCLB219EZG)

description:
https://www.encodeproject.org/experiments/ENCSR390SLL/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human left cardiac atrium
experiment encode accession: ENCSR390SLL
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB219EZG
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (42 years) left cardiac atrium tissue, preserved by cryopreservation

value: left cardiac atrium

value: female

value: Dilated cardiomyopathy

value: 42 year

value: Shin Lin

value: ENCBS764UUE at ENCODE; https://www.encodeproject.org/ENCBS764UUE/

value: Derived from ENCODE donor ENCDO996EBJ; https://www.encodeproject.org/ENCDO996EBJ/


title: ATAC-seq from heart left ventricle (ENCLB713CCC)

description:
https://www.encodeproject.org/experiments/ENCSR399OSE/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human heart left ventricle
experiment encode accession: ENCSR399OSE
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB713CCC
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: heart left ventricle

value: DM:yes; HTN:yes; CAD:no

value: 47 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS482OVS at ENCODE; https://www.encodeproject.org/ENCBS482OVS/

value: Derived from ENCODE donor ENCDO528BHB; https://www.encodeproject.org/ENCDO528BHB/


title: ATAC-seq from lower lobe of right lung (ENCLB954AUD)

description:
https://www.encodeproject.org/experiments/ENCSR948MQC/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human lower lobe of right lung
experiment encode accession: ENCSR948MQC
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB954AUD
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (65 years) lower lobe of right lung tissue, preserved by cryopreservation

value: lower lobe of right lung

value: tissue

value: lung transplant recipient with obliterative bronchiolitis; tissue sample from explanted lung

value: 65 year

value: ENCBS377PMT at ENCODE; https://www.encodeproject.org/ENCBS377PMT/

value: Derived from ENCODE donor ENCDO719GRD; https://www.encodeproject.org/ENCDO719GRD/


title: ATAC-seq from lower lobe of right lung (ENCLB485ZFG)

description:
https://www.encodeproject.org/experiments/ENCSR948MQC/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human lower lobe of right lung
experiment encode accession: ENCSR948MQC
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB485ZFG
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: female

value: adult


title: ATAC-seq from right lobe of liver (ENCLB601CFI)

description:
https://www.encodeproject.org/experiments/ENCSR952SPO/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human right lobe of liver
experiment encode accession: ENCSR952SPO
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB601CFI
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female child (16 years) right lobe of liver tissue, preserved by cryopreservation

value: right lobe of liver

value: Child biosample for Chang/Greenleaf lab

value: DM:no; HTN:no; CAD:no

value: child

value: 16 year

value: ENCBS976GTM at ENCODE; https://www.encodeproject.org/ENCBS976GTM/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: ATAC-seq from heart right ventricle (ENCLB477FZO)

description:
https://www.encodeproject.org/experiments/ENCSR563ZNI/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human heart right ventricle
experiment encode accession: ENCSR563ZNI
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB477FZO
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens male adult (61 years) heart right ventricle tissue

value: heart right ventricle

value: male

value: nonischemic (EF 11% LVEDD 7.7; RV severe dilation, severe dysfunction)

value: 61 year

value: Michael Snyder, Stanford

value: Shin Lin

value: ENCBS134ALJ at ENCODE; https://www.encodeproject.org/ENCBS134ALJ/

value: Derived from ENCODE donor ENCDO808ASZ; https://www.encodeproject.org/ENCDO808ASZ/


title: ATAC-seq from heart right ventricle (ENCLB133TCL)

description:
https://www.encodeproject.org/experiments/ENCSR563ZNI/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human heart right ventricle
experiment encode accession: ENCSR563ZNI
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB133TCL
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: tissue


title: ATAC-seq from lower lobe of left lung (ENCLB162DSS)

description:
https://www.encodeproject.org/experiments/ENCSR555ZDH/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human lower lobe of left lung
experiment encode accession: ENCSR555ZDH
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB162DSS
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens male adult (60 years) lower lobe of left lung tissue, preserved by cryopreservation

value: lower lobe of left lung

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: adult

value: 60 year

value: Yiing Lin, MD, PhD

value: ENCBS878VRG at ENCODE; https://www.encodeproject.org/ENCBS878VRG/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: ATAC-seq from left colon (ENCLB555UOT)

description:
https://www.encodeproject.org/experiments/ENCSR600ZHS/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human left colon
experiment encode accession: ENCSR600ZHS
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB555UOT
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: left colon

value: female

value: DM:no; HTN:no; CAD:no

value: 46 year

value: ENCBS575IQJ at ENCODE; https://www.encodeproject.org/ENCBS575IQJ/

value: Derived from ENCODE donor ENCDO411EVD; https://www.encodeproject.org/ENCDO411EVD/


title: Control ChIP-seq from HepG2 (ENCLB089YCR)

description:
https://www.encodeproject.org/experiments/ENCSR555EMB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR555EMB
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-26
lab: Richard Myers, HAIB
library encode accession: ENCLB089YCR
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS566YUG at ENCODE; https://www.encodeproject.org/ENCBS566YUG/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: Control ChIP-seq from K562 (ENCLB591BNP)

description:
https://www.encodeproject.org/experiments/ENCSR328FYU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR328FYU
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB591BNP
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: ATCC

value: ENCBS307KLN at ENCODE; https://www.encodeproject.org/ENCBS307KLN/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from lower lobe of left lung (ENCLB036LSV)

description:
https://www.encodeproject.org/experiments/ENCSR555ZDH/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human lower lobe of left lung
experiment encode accession: ENCSR555ZDH
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB036LSV
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: lower lobe of left lung

value: tissue

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: 60 year

value: Yiing Lin, MD, PhD

value: ENCBS878VRG at ENCODE; https://www.encodeproject.org/ENCBS878VRG/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: Control ChIP-seq from HepG2 (ENCLB002SJW)

description:
https://www.encodeproject.org/experiments/ENCSR388OQM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR388OQM
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-26
lab: Richard Myers, HAIB
library encode accession: ENCLB002SJW
fragmentation methods: sonication (generic)

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS545NEV at ENCODE; https://www.encodeproject.org/ENCBS545NEV/


title: Control ChIP-seq from K562 (ENCLB005SGH)

description:
https://www.encodeproject.org/experiments/ENCSR322WTB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR322WTB
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB005SGH
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF77

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS334GKA at ENCODE; https://www.encodeproject.org/ENCBS334GKA/


title: Control ChIP-seq from K562 (ENCLB019LDU)

description:
https://www.encodeproject.org/experiments/ENCSR121UHI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR121UHI
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB019LDU
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF511

value: ENCBS694ZXD at ENCODE; https://www.encodeproject.org/ENCBS694ZXD/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from pancreas (ENCLB329PIQ)

description:
https://www.encodeproject.org/experiments/ENCSR918TVE/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human pancreas
experiment encode accession: ENCSR918TVE
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB329PIQ
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (47 years) pancreas tissue, preserved by cryopreservation

value: pancreas

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: 47 year

value: Yiing Lin, MD, PhD

value: ENCBS111NIN at ENCODE; https://www.encodeproject.org/ENCBS111NIN/

value: Derived from ENCODE donor ENCDO528BHB; https://www.encodeproject.org/ENCDO528BHB/


title: ATAC-seq from heart left ventricle (ENCLB841XEI)

description:
https://www.encodeproject.org/experiments/ENCSR925LGW/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human heart left ventricle
experiment encode accession: ENCSR925LGW
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB841XEI
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (59 years) heart left ventricle tissue, preserved by cryopreservation

value: heart left ventricle

value: 59 year

value: ENCBS792HFG at ENCODE; https://www.encodeproject.org/ENCBS792HFG/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: ATAC-seq from heart left ventricle (ENCLB306VEB)

description:
https://www.encodeproject.org/experiments/ENCSR925LGW/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human heart left ventricle
experiment encode accession: ENCSR925LGW
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB306VEB
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: female

value: adult


title: Control ChIP-seq from K562 (ENCLB898UZP)

description:
https://www.encodeproject.org/experiments/ENCSR326NFX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR326NFX
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB898UZP
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF281

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS286QNJ at ENCODE; https://www.encodeproject.org/ENCBS286QNJ/


title: ATAC-seq from right cardiac atrium (ENCLB100KLO)

description:
https://www.encodeproject.org/experiments/ENCSR177JWR/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human right cardiac atrium
experiment encode accession: ENCSR177JWR
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB100KLO
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (59 years) right cardiac atrium tissue, preserved by cryopreservation

value: right cardiac atrium

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: ENCBS739EVX at ENCODE; https://www.encodeproject.org/ENCBS739EVX/


title: ATAC-seq from adrenal gland (ENCLB251LVK)

description:
https://www.encodeproject.org/experiments/ENCSR553LAZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human adrenal gland
experiment encode accession: ENCSR553LAZ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB251LVK
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female child (16 years) adrenal gland tissue, preserved by cryopreservation

value: adrenal gland

value: DM:no; HTN:no; CAD:no

value: child

value: 16 year

value: Yiing Lin, MD, PhD

value: ENCBS633RRN at ENCODE; https://www.encodeproject.org/ENCBS633RRN/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: ATAC-seq from adrenal gland (ENCLB997SPR)

description:
https://www.encodeproject.org/experiments/ENCSR553LAZ/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human adrenal gland
experiment encode accession: ENCSR553LAZ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB997SPR
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: female


title: ATAC-seq from posterior vena cava (ENCLB523IAG)

description:
https://www.encodeproject.org/experiments/ENCSR552QUA/
***************
biological replicate number: 1
technical replicate number: 3
description: ATAC-seq on human posterior vena cava
experiment encode accession: ENCSR552QUA
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB523IAG
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (47 years) posterior vena cava tissue, preserved by flash-freezing

value: posterior vena cava

value: adult

value: 47 year

value: ENCBS003DOL at ENCODE; https://www.encodeproject.org/ENCBS003DOL/

value: Derived from ENCODE donor ENCDO528BHB; https://www.encodeproject.org/ENCDO528BHB/


title: ATAC-seq from left cardiac atrium (ENCLB100KAW)

description:
https://www.encodeproject.org/experiments/ENCSR390SLL/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human left cardiac atrium
experiment encode accession: ENCSR390SLL
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB100KAW
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: left cardiac atrium

value: Dilated cardiomyopathy

value: 42 year

value: Michael Snyder, Stanford

value: Shin Lin

value: ENCBS764UUE at ENCODE; https://www.encodeproject.org/ENCBS764UUE/

value: Derived from ENCODE donor ENCDO996EBJ; https://www.encodeproject.org/ENCDO996EBJ/


title: Control ChIP-seq from K562 (ENCLB773WKY)

description:
https://www.encodeproject.org/experiments/ENCSR863VLO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR863VLO
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB773WKY
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF174

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Kevin White

value: ENCBS924CHV at ENCODE; https://www.encodeproject.org/ENCBS924CHV/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from adrenal gland (ENCLB599VPK)

description:
https://www.encodeproject.org/experiments/ENCSR542RNG/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human adrenal gland
experiment encode accession: ENCSR542RNG
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB599VPK
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens male adult (26 years) adrenal gland tissue, preserved by cryopreservation

value: adrenal gland

value: tissue

value: male

value: DM:no; HTN:no; CAD:no

value: adult

value: 26 year

value: Yiing Lin, MD, PhD

value: ENCBS475WUJ at ENCODE; https://www.encodeproject.org/ENCBS475WUJ/

value: Derived from ENCODE donor ENCDO221IPH; https://www.encodeproject.org/ENCDO221IPH/


title: ATAC-seq from pancreas (ENCLB558PZC)

description:
https://www.encodeproject.org/experiments/ENCSR918TVE/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human pancreas
experiment encode accession: ENCSR918TVE
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB558PZC
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: pancreas

value: female

value: DM:yes; HTN:yes; CAD:no

value: 47 year

value: Michael Snyder, Stanford

value: ENCBS111NIN at ENCODE; https://www.encodeproject.org/ENCBS111NIN/

value: Derived from ENCODE donor ENCDO528BHB; https://www.encodeproject.org/ENCDO528BHB/


title: ATAC-seq from psoas muscle (ENCLB761JWC)

description:
https://www.encodeproject.org/experiments/ENCSR890DWH/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human psoas muscle
experiment encode accession: ENCSR890DWH
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB761JWC
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (41 years) psoas muscle tissue, preserved by flash-freezing

value: psoas muscle

value: 41 year

value: ENCBS110POC at ENCODE; https://www.encodeproject.org/ENCBS110POC/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: CD8+_T-cells_patient_N11_TIGIT-

status: Public on Mar 31 2021

type: RNA

city: Bethesda

first: Jana

last: Blazkova

address: 9000 Rockville Pike

institute: NIH

hyb_protocol: Six μg of labeled cRNA was hybridized to Affymetrix Human Genome WT Array Strip at 48°C for 20 hours. The arrays were washed using the GeneAtlas Hybridization, Wash, and Stain Kit for WT Array Strips.

scan_protocol: Raw CEL files were obtained from the GeneAtlas Software and were normalized by Robust Multiarray Average (RMA)

data_processing: The normalized expression values were batch corrected for array prep and array ID. Differential expression was performed on batch corrected expression values using the Linear Models for Microarray Analysis (LIMMA) package.

label: biotin

molecule: total RNA

source_name: CD8+ T-cells TIGIT-

label_protocol: 100 ng of total RNA was amplified and labeled using GeneChip Whole Transcript (WT) PLUS Reagent Kit (Affymetrix), according to manufacturer’s instructions.

growth_protocol: Peripheral blood mononuclear cells (PBMC) were isolated from whole blood and leukapheresed products by Ficoll-Hypaque density gradient centrifugation.

extract_protocol: Total RNA from TIGIT+ and TIGIT-CD8+ T cells were isolated using an RNeasy Mini kit (Qiagen) according to manufacturer’s specifications.

treatment_protocol: CD8+ T cells were isolated using a negative cell separation technique (StemCell Technologies). TIGIT+ and TIGIT- cells were further enriched using TIGIT-PE antibody (eBioscience) and anti-PE magnetic beads (StemCell Technologies).

tag: cell type

value: CD8+ T-cells

tag: expression

value: TIGIT-

tag: hiv status

value: healthy


title: ATAC-seq from adrenal gland (ENCLB677QLR)

description:
https://www.encodeproject.org/experiments/ENCSR542RNG/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human adrenal gland
experiment encode accession: ENCSR542RNG
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB677QLR
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: adrenal gland

value: tissue

value: male

value: DM:no; HTN:no; CAD:no

value: adult

value: 26 year

value: Yiing Lin, MD, PhD


title: Control ChIP-seq from K562 (ENCLB327RPK)

description:
https://www.encodeproject.org/experiments/ENCSR397ZZR/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq in K562
experiment encode accession: ENCSR397ZZR
assay title: Control ChIP-seq
assembly: hg19, GRCh38
encode release date: 2017-02-02
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB327RPK
size range: 200-400

source_name: Homo sapiens K562 cell line

value: cell line

value: Control ChIP-seq in K562

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Xiang-Dong Fu, UCSD

value: ATCC

value: ENCBS007KQB at ENCODE; https://www.encodeproject.org/ENCBS007KQB/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from psoas muscle (ENCLB723FWO)

description:
https://www.encodeproject.org/experiments/ENCSR890DWH/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human psoas muscle
experiment encode accession: ENCSR890DWH
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB723FWO
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: psoas muscle

value: 41 year

value: Michael Snyder, Stanford

value: ENCBS110POC at ENCODE; https://www.encodeproject.org/ENCBS110POC/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Control ChIP-seq from K562 (ENCLB158IVQ)

description:
https://www.encodeproject.org/experiments/ENCSR502CWG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR502CWG
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB158IVQ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF280B

value: adult

value: ENCBS124ZLQ at ENCODE; https://www.encodeproject.org/ENCBS124ZLQ/


title: ATAC-seq from heart right ventricle (ENCLB382ZXT)

description:
https://www.encodeproject.org/experiments/ENCSR157OSO/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human heart right ventricle
experiment encode accession: ENCSR157OSO
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB382ZXT
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (47 years) heart right ventricle tissue, preserved by cryopreservation

value: heart right ventricle

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: 47 year

value: Yiing Lin, MD, PhD

value: ENCBS435KPO at ENCODE; https://www.encodeproject.org/ENCBS435KPO/

value: Derived from ENCODE donor ENCDO528BHB; https://www.encodeproject.org/ENCDO528BHB/


title: ATAC-seq from heart right ventricle (ENCLB852JMY)

description:
https://www.encodeproject.org/experiments/ENCSR157OSO/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human heart right ventricle
experiment encode accession: ENCSR157OSO
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB852JMY
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: female


title: ATAC-seq from mucosa of urinary bladder (ENCLB787GMJ)

description:
https://www.encodeproject.org/experiments/ENCSR153IUB/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human mucosa of urinary bladder
experiment encode accession: ENCSR153IUB
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB787GMJ
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens male adult (26 years) mucosa of urinary bladder tissue, preserved by flash-freezing

value: mucosa of urinary bladder

value: male

value: DM:no; HTN:no; CAD:no

value: 26 year

value: ENCBS280UGX at ENCODE; https://www.encodeproject.org/ENCBS280UGX/

value: Derived from ENCODE donor ENCDO221IPH; https://www.encodeproject.org/ENCDO221IPH/


title: ATAC-seq from posterior vena cava (ENCLB299OBO)

description:
https://www.encodeproject.org/experiments/ENCSR552QUA/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human posterior vena cava
experiment encode accession: ENCSR552QUA
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB299OBO
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: posterior vena cava

value: Michael Snyder, Stanford

value: ENCBS003DOL at ENCODE; https://www.encodeproject.org/ENCBS003DOL/


title: Control ChIP-seq from K562 (ENCLB397ILD)

description:
https://www.encodeproject.org/experiments/ENCSR116EAU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR116EAU
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB397ILD
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF76

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Kevin White

value: ENCBS828WQS at ENCODE; https://www.encodeproject.org/ENCBS828WQS/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: Control ChIP-seq from MCF-7 (ENCLB329VZR)

description:
https://www.encodeproject.org/experiments/ENCSR115CIR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human MCF-7
experiment encode accession: ENCSR115CIR
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB329VZR
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens MCF-7 cell line

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: ATCC

value: ENCBS305CJA at ENCODE; https://www.encodeproject.org/ENCBS305CJA/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: TF ChIP-seq from OCI-LY7 (ENCLB387IDD)

description:
https://www.encodeproject.org/experiments/ENCSR565XSL/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR565XSL
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR063AUO
encode release date: 2018-02-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB387IDD
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens OCI-LY7 immortalized cell line

tag: antibody

value: established from the peripheral blood sample of a 48-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL, diffuse large cell lymphoma, DLCL, stage 2A, at relapse) in 1984

value: male

value: 48 year

value: B cell lymphoma

value: Bradley Bernstein, Broad

value: ENCBS040MJM at ENCODE; https://www.encodeproject.org/ENCBS040MJM/

value: Derived from ENCODE donor ENCDO351AAA; https://www.encodeproject.org/ENCDO351AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1881; http://web.expasy.org/cellosaurus/CVCL_1881


title: ATAC-seq from mucosa of urinary bladder (ENCLB969IYF)

description:
https://www.encodeproject.org/experiments/ENCSR153IUB/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human mucosa of urinary bladder
experiment encode accession: ENCSR153IUB
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB969IYF
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: mucosa of urinary bladder

value: tissue

value: DM:no; HTN:no; CAD:no

value: adult

value: 26 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS280UGX at ENCODE; https://www.encodeproject.org/ENCBS280UGX/

value: Derived from ENCODE donor ENCDO221IPH; https://www.encodeproject.org/ENCDO221IPH/


title: ATAC-seq from pancreas (ENCLB833OIK)

description:
https://www.encodeproject.org/experiments/ENCSR530XBF/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human pancreas
experiment encode accession: ENCSR530XBF
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB833OIK
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female child (16 years) pancreas tissue, preserved by cryopreservation

value: pancreas

value: female

value: child

value: 16 year

value: ENCBS965RWI at ENCODE; https://www.encodeproject.org/ENCBS965RWI/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: Control ChIP-seq from HepG2 (ENCLB188VAM)

description:
https://www.encodeproject.org/experiments/ENCSR356LLA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR356LLA
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-14
lab: Richard Myers, HAIB
library encode accession: ENCLB188VAM
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line

value: cell line

value: male

value: hepatocellular carcinoma

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS191DCQ at ENCODE; https://www.encodeproject.org/ENCBS191DCQ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from liver (ENCLB091IMU)

description:
https://www.encodeproject.org/experiments/ENCSR562FNN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR562FNN
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-12-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB091IMU

source_name: Homo sapiens female embryo (101 days) liver tissue

value: liver

value: tissue

value: embryonic

value: 101 day

value: John Stamatoyannopoulos, UW

value: BDRL

value: ENCBS037HTE at ENCODE; https://www.encodeproject.org/ENCBS037HTE/

value: Derived from ENCODE donor ENCDO060OTP; https://www.encodeproject.org/ENCDO060OTP/


title: Control ChIP-seq from MCF-7 (ENCLB509LOI)

description:
https://www.encodeproject.org/experiments/ENCSR646YPU/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-HBP1 tagged MCF7 cell line.
experiment encode accession: ENCSR646YPU
assay title: Control ChIP-seq
assembly: hg19, GRCh38
encode release date: 2016-05-18
lab: Kevin White, UChicago
library encode accession: ENCLB509LOI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Homo sapiens MCF-7 cell line genetically modified (insertion) using CRISPR targeting HBP1

value: MCF7 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to HBP1

value: female

value: breast cancer (adenocarcinoma)

value: adult

value: 69 year

value: Kevin White, UChicago

value: Kevin White

value: ENCBS812LYE at ENCODE; https://www.encodeproject.org/ENCBS812LYE/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: Control ChIP-seq from HepG2 (ENCLB412YIY)

description:
https://www.encodeproject.org/experiments/ENCSR561BTA/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on HepG2
experiment encode accession: ENCSR561BTA
assay title: Control ChIP-seq
assembly: hg19, GRCh38
encode release date: 2017-02-02
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB412YIY
size range: 200-400

value: cell line

value: Control ChIP-seq on HepG2 cells

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Xiang-Dong Fu, UCSD

value: ATCC

value: ENCBS444MVG at ENCODE; https://www.encodeproject.org/ENCBS444MVG/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: Control ChIP-seq from HepG2 (ENCLB078OMN)

description:
https://www.encodeproject.org/experiments/ENCSR561BTA/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on HepG2
experiment encode accession: ENCSR561BTA
assay title: Control ChIP-seq
assembly: hg19, GRCh38
encode release date: 2017-02-02
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB078OMN
size range: 200-400

value: ENCBS313IHS at ENCODE; https://www.encodeproject.org/ENCBS313IHS/


title: ATAC-seq from psoas muscle (ENCLB852DIZ)

description:
https://www.encodeproject.org/experiments/ENCSR886VCC/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human psoas muscle
experiment encode accession: ENCSR886VCC
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB852DIZ
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens female adult (47 years) psoas muscle tissue, preserved by flash-freezing

value: psoas muscle

value: tissue

value: female

value: DM:yes; HTN:yes; CAD:no

value: adult

value: 47 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS808KRF at ENCODE; https://www.encodeproject.org/ENCBS808KRF/

value: Derived from ENCODE donor ENCDO528BHB; https://www.encodeproject.org/ENCDO528BHB/


title: DNase-seq from ecto neural progenitor cell (ENCLB303OLI)

description:
https://www.encodeproject.org/experiments/ENCSR360XIS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR360XIS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2018-02-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB303OLI

source_name: Homo sapiens female embryo (5 days) ecto neural progenitor in vitro differentiated cells originated from H9

value: ecto neural progenitor cell

value: in vitro differentiated cells

value: healthy

value: embryonic

value: 5 day

value: John Stamatoyannopoulos, UW

value: Stephen Dalton

value: ENCBS946LBI at ENCODE; https://www.encodeproject.org/ENCBS946LBI/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: DNase-seq from RCC (ENCLB249NSX)

description:
https://www.encodeproject.org/experiments/ENCSR337IRF/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR337IRF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2018-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB249NSX

source_name: Homo sapiens RCC cell line

value: RCC

value: cell line

value: female

value: 80 year

value: Unknown Source

value: ENCBS967MVM at ENCODE; https://www.encodeproject.org/ENCBS967MVM/

value: Derived from ENCODE donor ENCDO421EJG; https://www.encodeproject.org/ENCDO421EJG/


title: Control ChIP-seq from A549 (ENCLB259SCA)

description:
https://www.encodeproject.org/experiments/ENCSR308QHN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human A549
experiment encode accession: ENCSR308QHN
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB259SCA
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting ZNF624

value: male

value: adult

value: 58 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS875NEG at ENCODE; https://www.encodeproject.org/ENCBS875NEG/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Control ChIP-seq from HepG2 (ENCLB112MEK)

description:
https://www.encodeproject.org/experiments/ENCSR141EZP/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on HepG2
experiment encode accession: ENCSR141EZP
assay title: Control ChIP-seq
assembly: hg19, GRCh38
encode release date: 2017-02-17
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB112MEK
size range: 200-400

value: Control ChIP-seq on HepG2 cells

value: hepatocellular carcinoma

value: child

value: 15 year

value: Xiang-Dong Fu, UCSD

value: ATCC

value: ENCBS463HNE at ENCODE; https://www.encodeproject.org/ENCBS463HNE/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: Control ChIP-seq from HepG2 (ENCLB272VNA)

description:
https://www.encodeproject.org/experiments/ENCSR141EZP/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on HepG2
experiment encode accession: ENCSR141EZP
assay title: Control ChIP-seq
assembly: hg19, GRCh38
encode release date: 2017-02-17
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB272VNA
size range: 200-400

value: cell line

value: ENCBS845QPP at ENCODE; https://www.encodeproject.org/ENCBS845QPP/


title: ATAC-seq from psoas muscle (ENCLB333EEQ)

description:
https://www.encodeproject.org/experiments/ENCSR886VCC/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human psoas muscle
experiment encode accession: ENCSR886VCC
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB333EEQ
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: psoas muscle

value: tissue

value: female

value: DM:yes; HTN:yes; CAD:no

value: 47 year

value: Yiing Lin, MD, PhD

value: ENCBS808KRF at ENCODE; https://www.encodeproject.org/ENCBS808KRF/

value: Derived from ENCODE donor ENCDO528BHB; https://www.encodeproject.org/ENCDO528BHB/


title: ATAC-seq from pancreas (ENCLB785GJL)

description:
https://www.encodeproject.org/experiments/ENCSR530XBF/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human pancreas
experiment encode accession: ENCSR530XBF
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB785GJL
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: pancreas

value: DM:no; HTN:no; CAD:no

value: 16 year

value: Michael Snyder, Stanford

value: ENCBS965RWI at ENCODE; https://www.encodeproject.org/ENCBS965RWI/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: ATAC-seq from left ventricle myocardium superior (ENCLB672AHE)

description:
https://www.encodeproject.org/experiments/ENCSR133WJY/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human left ventricle myocardium superior
experiment encode accession: ENCSR133WJY
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-09-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB672AHE
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens male adult (60 years) left ventricle myocardium superior tissue, preserved by cryopreservation

value: left ventricle myocardium superior

value: Superior wall of left ventricle.

value: male

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: adult

value: 60 year

value: ENCBS512EYJ at ENCODE; https://www.encodeproject.org/ENCBS512EYJ/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: ATAC-seq from heart right ventricle (ENCLB629DEH)

description:
https://www.encodeproject.org/experiments/ENCSR522FGI/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human heart right ventricle
experiment encode accession: ENCSR522FGI
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB629DEH
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens male adult (43 years) heart right ventricle tissue

value: heart right ventricle

value: tissue

value: nonischemic (EF 23%, LVEDD 6.1; RV moderate dilation, normal function)

value: 43 year

value: Shin Lin

value: ENCBS860PHH at ENCODE; https://www.encodeproject.org/ENCBS860PHH/

value: Derived from ENCODE donor ENCDO967KID; https://www.encodeproject.org/ENCDO967KID/


title: DNase-seq from placenta (ENCLB402JXP)

description:
https://www.encodeproject.org/experiments/ENCSR552XJI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR552XJI
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-12-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB402JXP

source_name: Homo sapiens embryo (59 days) placenta tissue

value: placenta

value: not collected

value: embryonic

value: 59 day

value: John Stamatoyannopoulos, UW

value: BDRL

value: ENCBS527IGL at ENCODE; https://www.encodeproject.org/ENCBS527IGL/

value: Derived from ENCODE donor ENCDO041UTR; https://www.encodeproject.org/ENCDO041UTR/


title: TF ChIP-seq from SK-N-MC (ENCLB072GUI)

description:
https://www.encodeproject.org/experiments/ENCSR113GDB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against EZH2 using SK-N-MC cell line which was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (www.ncbi.nlm.nih.gov/pubmed/15548687, www.ncbi.nlm.nih.gov/pubmed/25453903, www.ncbi.nlm.nih.gov/biosample/3151999).
experiment encode accession: ENCSR113GDB
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR899XXQ
encode release date: 2017-12-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB072GUI
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 6
nucleic acid starting quantity units: ng

source_name: Homo sapiens SK-N-MC immortalized cell line

value: SK-N-MC

value: cell line

value: Please note:This cell line was previously described as a neuroepithelioma (ATCC HTB-10).  However recent evidence reveals it is Ewing's Sarcoma (http://www.ncbi.nlm.nih.gov/pubmed/15548687, http://www.ncbi.nlm.nih.gov/biosample/3151999, http://www.ncbi.nlm.nih.gov/pubmed/25453903).

value: child

value: female

value: 14 year

value: Ewing's sarcoma

value: Bradley Bernstein, Broad

value: ENCBS203EZT at ENCODE; https://www.encodeproject.org/ENCBS203EZT/

value: Derived from ENCODE donor ENCDO000ABC; https://www.encodeproject.org/ENCDO000ABC/

value: ENCODE dbxrefs Cellosaurus CVCL_0530; http://web.expasy.org/cellosaurus/CVCL_0530


title: Control ChIP-seq from K562 (ENCLB428ASB)

description:
https://www.encodeproject.org/experiments/ENCSR516XLO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR516XLO
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-26
lab: Richard Myers, HAIB
library encode accession: ENCLB428ASB
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS894LIG at ENCODE; https://www.encodeproject.org/ENCBS894LIG/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from OCI-LY7 (ENCLB735FVB)

description:
https://www.encodeproject.org/experiments/ENCSR565XSL/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR565XSL
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR063AUO
encode release date: 2018-02-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB735FVB
fragmentation methods: sonication (generic)
size range: 200-600

value: cell line

value: established from the peripheral blood sample of a 48-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL, diffuse large cell lymphoma, DLCL, stage 2A, at relapse) in 1984

value: male

value: 48 year

value: B cell lymphoma

value: ENCBS040MJM at ENCODE; https://www.encodeproject.org/ENCBS040MJM/

value: Derived from ENCODE donor ENCDO351AAA; https://www.encodeproject.org/ENCDO351AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1881; http://web.expasy.org/cellosaurus/CVCL_1881


title: ATAC-seq from heart right ventricle (ENCLB271RYI)

description:
https://www.encodeproject.org/experiments/ENCSR522FGI/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human heart right ventricle
experiment encode accession: ENCSR522FGI
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB271RYI
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: heart right ventricle

value: tissue

value: nonischemic (EF 23%, LVEDD 6.1; RV moderate dilation, normal function)

value: 43 year

value: Michael Snyder, Stanford

value: Shin Lin

value: ENCBS860PHH at ENCODE; https://www.encodeproject.org/ENCBS860PHH/

value: Derived from ENCODE donor ENCDO967KID; https://www.encodeproject.org/ENCDO967KID/


title: ATAC-seq from heart right ventricle (ENCLB323CCD)

description:
https://www.encodeproject.org/experiments/ENCSR133CMC/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human heart right ventricle
experiment encode accession: ENCSR133CMC
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB323CCD
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens male adult (69 years) heart right ventricle tissue

value: ischemic (EF 25% LVEDD 5.7; RV mildly dilated, moderate dysfunction)

value: adult

value: 69 year

value: ENCBS791FQA at ENCODE; https://www.encodeproject.org/ENCBS791FQA/

value: Derived from ENCODE donor ENCDO477WED; https://www.encodeproject.org/ENCDO477WED/


title: Control ChIP-seq from K562 (ENCLB366FGE)

description:
https://www.encodeproject.org/experiments/ENCSR310OPP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR310OPP
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB366FGE
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting NR4A1

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Kevin White

value: ENCBS610DXM at ENCODE; https://www.encodeproject.org/ENCBS610DXM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: Control ChIP-seq from HepG2 (ENCLB137XQU)

description:
https://www.encodeproject.org/experiments/ENCSR524BHN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR524BHN
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-14
lab: Richard Myers, HAIB
library encode accession: ENCLB137XQU
fragmentation methods: sonication (generic)

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS032UNZ at ENCODE; https://www.encodeproject.org/ENCBS032UNZ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/