title: rep1_Razoxane_Streptozotocin

description: rep1_Razoxane_StreptozotocinReadsPerGene

value: bcr:abl fusion gene


title: s.NJA01401.P14

status: Public on May 20 2021

type: SRA

city: Stockholm

first: Martin

last: Enge

address: CCK, Z4

department: Dep of Oncology-Pathology

country: Sweden

institute: Karolinska Institute

library_source: transcriptomic

data_processing:
Sequencing reads were trimmed, adapter sequences removed
Reads aligned to the mm10 reference assembly using STAR with default parameters
Duplicate reads were removed using picard
Transcript counts were obtained using HTSeq35 and mm10 UCSC exon/transcript annotations
Single cell profiles with the following features were deemed to be of poor quality and removed: 1) cells with less than a specified total number of valid counts in exonic regions (1.8x104 and 4x104 for the mouse gut and sorted multiplets dataset, respectively), 2) cells with low actin TPM, and 3) cells with high fractions of ERCC reads. To determine a cut-off for actin TPM, we used the normal distribution with empirical mean and standard deviation from log2 transformed actin TPM, which is normally distributed in successful experiments. The cut-off was set to the 0.01 quantile (eg. the lower 0.01 % of the bell curve). A similar strategy was used for fractions of ERCC reads, samples with a log2 transformed fraction of ERCC reads above the 0.99 % quantile were rejected.
Genome_build: mm10 (GRCm38)
Supplementary_files_format_and_content: htseq-format of raw counts

molecule: total RNA

organism: Mus musculus

source_name: colon

growth_protocol: Small intestine and colon were removed from C57BL/J wild-type mice and kept on ice in phosphate buffered saline (PBS). Lumina of colon and small intestine were washed three times with PBS and adipose tissue connected to the exterior of the small intestine or colon was removed. Colon and small intestine were opened longitudinally, and any remaining mucous on covering the epithelial layer was gently rubbed off. Tissues were washed once in PBS before being cut into 0.5 - 1 mm long fragments. Colon fragments were immersed in 10mM EDTA-PBS and incubated for 105 minutes on ice, with shaking every 15 minutes. Small intestinal fragments were similarly immersed in 10mM EDTA-PBS on ice and shaken. After 15 minutes, small intestinal fragments were allowed to settle at the bottom and the supernatant was discarded and replaced with new 10mM EDTA-PBS and shaken vigorously. This procedure was repeated 1-2 times, with supernatant fractions investigated through light microscopy before discarding, in order to enrich for crypts. Small intestinal fragments were then incubated on ice for 45-60 minutes for a total of 105 minutes. Following EDTA-PBS treatment fractions were triturated 10-15 times. Colon fractions were strained through a 100 um filter while small intestinal fractions were strained through a 70 um filter. Fractions were centrifuged at 300g for 5 minutes and dissociated using TrypLE Express (Invitrogen) at 37°C for 15-20 minutes. Enzymatic dissociation was supervised using light microscopy during regular intervals to obtain an appropriate amount of single cells and multiplets. Dead cells were removed using Dead Cell Removal Kit (Miltenyi Biotec) according to the manufacturer's protocol before staining for FACS sorting was performed.

extract_protocol:
For mouse intestine, cells were stained with FITC anti-CD326 and 7AAD (Sony Biotechnology) in order to monitor number of epithelial cells and select live cells. Additionally, paneth cells were enriched using Brilliant Violent anti-CD24. For spleen, cells were sorted with only 7AAD to remove dead cells, not other antibodies. Single cells were distinguished from multiplets using FSC-H and FSC-W gating and the gating scheme was visually confirmed via phase contrast microscopy (Fig. 1a). Cells were sorted into 384- or 96-well plates containing hypotonic lysis buffer using a SH800S FACS sorter (Sony). Plates were sealed immediately after sorting with microseal F foil (Biorad) and centrifuged at 4000g at 4°C for 5 min before being frozen on dry ice and stored at -80°C.
Single-cell and multiplet RNA-Seq libraries were generated as described. Briefly, single-cells collected in 384-well plates were lysed, followed by reverse transcription with template-switch using an LNA-modified template switch oligo to generate cDNA. After 21 cycles of pre-amplification, DNA was purified and analysed on an automated Fragment Analyzer (Advanced Analytical). Each cell’s cDNA fragment profile was individually inspected and only wells with successful amplification products (concentration higher than 0.06 ng/ul) and with no detectable RNA degradation were selected for final library preparation. Tagmentation assays and barcoded sequencing libraries were prepared using Nextera XT kit (Illumina) according to the manufacturer's instructions. Barcoded libraries were pooled and subjected to 75 bp paired-end sequencing on the Illumina NextSeq 500 instrument.

tag: strain

tag: tissue

value: colon

tag: facs cellnumber

value: Singlet

tag: age (days)


title: rep2_Razoxane_YM155

city: Heidelberg

first: Lukas

last: Mathur

address: Meyerhofstraße 1

department: Genome Biology

country: Germany

institute: EMBL

data_processing:
CASANA software was used for basecalling
Read1 (Barcode) was used to demultiplex read 2 according to treatment conditions using Je Debarcode version 2.0.beta allowing a maximum of 6 mismatches per barcode sequence
Sequences were aligned to Homo_sapiens.GRCh38.84. using STAR version 2.4.2a
Created matrix with all alignments (treatment conditions) and remove genes with 0 read counts in all samples
Supplementary_files_format_and_content: Matrix containing read counts for all samples (replicate 1 to 3)

organism: Homo sapiens

source_name: K562 cells

growth_protocol: K562 cells were cultures in DMEM media supplemented with 10% BSA and 1% Penicillin Streptomycin

extract_protocol:
Cells were lysed and the released mRNA was reversed transcribed using barcoded poly-dT primers.
Biotin on the poly-dT primer was used to purify cDNA. Priming sites introduced over the poly-dT primers and the template switching oligonucleotide were used to amplify the cDNA. Subsequently, cDNA was fragmented using a hyperactive Tn5 transposase.

treatment_protocol: Cells were encapsulated into picoliter sized droplts along with 420 unique combinatorial treatment conditions. Droplets with cells were incubated for 12h at 37 degrees Celsius

tag: cell line

tag: cell type

value: Myelogenous leukemia cells

value: Razoxane

tag: genotype


title: rep2_Razoxane_Sonolisib

value: Sonolisib


title: rep1_Razoxane_Sonolisib


title: s.NJA01401.P12


title: m.NJA01401.P22

value: Multiplet


title: m.NJA01401.P20


title: rep3_Razoxane_SF1126


title: rep2_Razoxane_Tabloid

value: Tabloid


title: s.NJA01401.P09


title: s.NJA01401.P11


title: s.NJA01401.P08


title: s.NJA01401.P06


title: s.NJA01401.P07


title: rep3_Razoxane_Olomucin

value: Olomucin


title: rep3_Razoxane_NMS1286937


title: rep2_Razoxane_Olomucin


title: rep2_Razoxane_SF1126


title: rep1_Razoxane_Olomucin


title: rep1_Razoxane_NMS1286937


title: s.NJA01401.P03


title: rep2_Razoxane_NMS1286937


title: s.NJA01401.P01


title: m.NJA01401.O21


title: rep3_Razoxane_Mitomycin

value: Mitomycin


title: rep2_Razoxane_Mitomycin


title: rep1_Razoxane_Mitomycin


title: m.NJA01401.O19


title: rep3_Razoxane_Methotrexate

value: Methotrexate


title: s.NJA01401.P10


title: rep1_Razoxane_SF1126


title: rep2_Razoxane_Methotrexate


title: m.NJA01401.O20


title: s.NJA01401.O17


title: rep1_Razoxane_Methotrexate


title: rep3_Razoxane_Imatininb

value: Imatininb


title: s.NJA01401.O16


title: s.NJA01401.O15


title: rep2_Razoxane_Imatininb


title: s.NJA01401.O14


title: s.NJA01401.P05


title: rep1_Razoxane_Imatininb


title: s.NJA01401.O13


title: rep3_Razoxane_Hymenialdisine

description: rep3_Razoxane_HymenialdisineReadsPerGene

value: Hymenialdisine


title: rep2_Razoxane_Hymenialdisine

description: rep2_Razoxane_HymenialdisineReadsPerGene


title: s.NJA01401.O12


title: rep3_Razoxane_Hematoxylin

value: Hematoxylin


title: rep2_Razoxane_Hematoxylin


title: s.NJA01401.O11


title: s.NJA01401.O10


title: rep3_Razoxane_Fluoruracil

value: Fluoruracil


title: s.NJA01401.O06


title: s.NJA01401.O18


title: s.NJA01401.O04


title: rep1_Razoxane_Fluoruracil


title: rep1_Razoxane_Hematoxylin


title: s.NJA01401.O03


title: s.NJA01401.O05


title: s.NJA01401.O09


title: s.NJA01401.O02


title: rep3_Razoxane_EPIRUBICIN

value: EPIRUBICIN


title: m.NJA01401.N22


title: rep1_Razoxane_EPIRUBICIN


title: rep3_Razoxane_DMSO

value: DMSO


title: rep2_Razoxane_DMSO

value: bcr:abl fusion gene


title: m.NJA01401.N21

value: colon


title: rep2_Razoxane_EPIRUBICIN


title: m.NJA01401.N19


title: rep1_Razoxane_DMSO


title: s.NJA01401.N18

value: Singlet


title: rep1_Razoxane_Hymenialdisine

description: rep1_Razoxane_HymenialdisineReadsPerGene

value: Myelogenous leukemia cells


title: s.NJA01401.N17


title: s.NJA01401.O08


title: rep3_Razoxane_Decitabine

value: Razoxane

value: Decitabine


title: rep2_Razoxane_Decitabine


title: s.NJA01401.N16


title: rep2_Razoxane_Fluoruracil


title: rep1_Razoxane_Decitabine


title: s.NJA01401.N15


title: s.NJA01401.N14


title: rep2_Razoxane_Dacarbazine

value: Dacarbazine


title: rep3_Razoxane_Dacarbazine


title: s.NJA01401.N13


title: s.NJA01401.N12


title: rep1_Razoxane_Dacarbazine


title: rep3_Razoxane_Cytarabine

value: Cytarabine


title: rep2_Razoxane_Cytarabine


title: rep1_Razoxane_Cytarabine


title: s.NJA01401.N11


title: s.NJA01401.N10


title: s.NJA01401.N09


title: rep2_Razoxane_Blebbistatin

value: Blebbistatin


title: s.NJA01401.N07


title: s.NJA01401.N08


title: rep1_Razoxane_Blebbistatin


title: rep3_Razoxane_AT9283


title: rep2_Razoxane_AT9283


title: s.NJA01401.N05


title: s.NJA01401.N04


title: rep1_Razoxane_AT9283


title: s.NJA01401.N03


title: s.NJA01401.N02


title: rep2_PF562271_YM155


title: rep1_PF562271_YM155


title: s.NJA01401.N01


title: m.NJA01401.M22

value: Multiplet


title: rep3_PF562271_Trametinib

value: Trametinib


title: m.NJA01401.M21


title: s.NJA01401.O01


title: rep1_PF562271_Trametinib


title: rep2_PF562271_Trametinib


title: m.NJA01401.M19


title: rep3_Razoxane_Blebbistatin


title: s.NJA01401.M18


title: rep3_PF562271_Tabloid

value: Tabloid


title: rep1_PF562271_Tabloid


title: rep2_PF562271_Tabloid


title: s.NJA01401.M16


title: s.NJA01401.M15


title: s.NJA01401.M17


title: rep3_PF562271_Streptozotocin

description: rep3_PF562271_StreptozotocinReadsPerGene

value: Streptozotocin


title: rep2_PF562271_Streptozotocin

description: rep2_PF562271_StreptozotocinReadsPerGene


title: rep3_PF562271_Sonolisib

value: Sonolisib


title: s.NJA01401.N06


title: s.NJA01401.M12


title: rep2_PF562271_Sonolisib


title: s.NJA01401.M14


title: s.NJA01401.M13


title: s.NJA01401.M11


title: s.NJA01401.M09


title: rep1_PF562271_Streptozotocin

description: rep1_PF562271_StreptozotocinReadsPerGene


title: rep3_PF562271_SF1126


title: s.NJA01401.M08


title: rep3_PF562271_YM155


title: m.NJA01401.M20


title: rep1_PF562271_Sonolisib


title: rep2_PF562271_SF1126


title: s.NJA01401.M07


title: rep1_PF562271_SF1126


title: s.NJA01401.M06


title: rep3_PF562271_Olomucin

value: Olomucin


title: rep2_PF562271_Olomucin


title: s.NJA01401.M05


title: rep1_PF562271_Olomucin


title: rep3_PF562271_NMS1286937


title: s.NJA01401.M03


title: rep2_PF562271_NMS1286937


title: s.NJA01401.M02


title: m.NJA01401.L22


title: rep1_PF562271_NMS1286937


title: s.NJA01401.M01


title: m.NJA01401.L21


title: rep3_PF562271_Mitomycin

value: Mitomycin


title: m.NJA01401.L19


title: rep1_PF562271_Mitomycin


title: rep2_PF562271_Mitomycin


title: rep1_PF562271_Methotrexate

value: Methotrexate


title: rep3_PF562271_Methotrexate

value: bcr:abl fusion gene


title: s.NJA01401.L16

value: colon


title: s.NJA01401.L15

value: Singlet


title: rep3_PF562271_Imatininb

value: Myelogenous leukemia cells

value: Imatininb


title: rep2_PF562271_Methotrexate


title: s.NJA01401.L14


title: rep2_PF562271_Imatininb


title: s.NJA01401.M04


title: s.NJA01401.L12


title: s.NJA01401.L13


title: rep2_PF562271_Hymenialdisine

description: rep2_PF562271_HymenialdisineReadsPerGene

value: Hymenialdisine


title: rep3_PF562271_Hymenialdisine

description: rep3_PF562271_HymenialdisineReadsPerGene


title: rep1_PF562271_Imatininb


title: s.NJA01401.L11


title: s.NJA01401.L10


title: rep1_PF562271_Hymenialdisine

description: rep1_PF562271_HymenialdisineReadsPerGene


title: s.NJA01401.L08


title: s.NJA01401.L07


title: rep1_PF562271_Hematoxylin

value: Hematoxylin


title: rep2_PF562271_Hematoxylin


title: s.NJA01401.L18


title: s.NJA01401.L06


title: s.NJA01401.L17


title: s.NJA01401.L05


title: rep2_PF562271_Fluoruracil

value: Fluoruracil


title: rep1_PF562271_Fluoruracil


title: s.NJA01401.L04


title: rep3_PF562271_EPIRUBICIN

value: EPIRUBICIN


title: rep2_PF562271_EPIRUBICIN


title: s.NJA01401.L02


title: rep1_PF562271_EPIRUBICIN


title: rep3_PF562271_DMSO

value: DMSO


title: m.NJA01401.K21

value: Multiplet


title: m.NJA01401.K22


title: s.NJA01401.L01


title: rep1_PF562271_DMSO


title: rep2_PF562271_DMSO


title: s.NJA01401.L09


title: rep3_PF562271_Hematoxylin


title: m.NJA01401.K20


title: m.NJA01401.K19


title: rep3_PF562271_Decitabine

value: Decitabine


title: rep2_PF562271_Decitabine


title: s.NJA01401.K18


title: s.NJA01401.K17


title: rep3_PF562271_Dacarbazine

value: Dacarbazine


title: rep3_PF562271_Fluoruracil


title: rep2_PF562271_Dacarbazine


title: s.NJA01401.K15


title: s.NJA01401.K16


title: s.NJA01401.K14


title: s.NJA01401.K13


title: s.NJA01401.K12


title: s.NJA01401.L03


title: s.NJA01401.K11


title: s.NJA01401.K10


title: s.NJA01401.K08


title: rep2_PF562271_Cytarabine

value: Cytarabine


title: s.NJA01401.K09


title: rep1_PF562271_Blebbistatin

value: Blebbistatin


title: rep1_PF562271_Cytarabine


title: s.NJA01401.K07


title: rep2_PF562271_Blebbistatin


title: rep3_PF562271_AT9283


title: rep3_PF562271_Blebbistatin


title: rep1_PF562271_Decitabine


title: s.NJA01401.K05


title: s.NJA01401.K04


title: s.NJA01401.K06


title: s.NJA01401.K03


title: rep3_Oxaliplatin_YM155

value: Oxaliplatin


title: rep1_PF562271_AT9283


title: rep2_Oxaliplatin_YM155


title: s.NJA01401.K02


title: rep1_Oxaliplatin_YM155


title: rep1_PF562271_Dacarbazine


title: rep3_Oxaliplatin_Trametinib

value: Trametinib


title: rep3_PF562271_Cytarabine

value: bcr:abl fusion gene


title: m.NJA01401.J21

value: colon


title: rep2_Oxaliplatin_Trametinib


title: s.NJA01401.K01

value: Singlet


title: rep1_Oxaliplatin_Trametinib

value: Myelogenous leukemia cells


title: m.NJA01401.J19


title: m.NJA01401.J20


title: rep3_Oxaliplatin_Tabloid

value: Tabloid


title: rep2_Oxaliplatin_Tabloid


title: rep3_Oxaliplatin_Streptozotocin

description: rep3_Oxaliplatin_StreptozotocinReadsPerGene

value: Streptozotocin


title: s.NJA01401.J18


title: rep2_PF562271_AT9283


title: s.NJA01401.J17


title: rep1_Oxaliplatin_Tabloid


title: rep1_Oxaliplatin_Streptozotocin

description: rep1_Oxaliplatin_StreptozotocinReadsPerGene


title: s.NJA01401.J16


title: s.NJA01401.J13


title: rep2_Oxaliplatin_Streptozotocin

description: rep2_Oxaliplatin_StreptozotocinReadsPerGene


title: s.NJA01401.J15


title: s.NJA01401.J14


title: rep2_Oxaliplatin_Sonolisib

value: Sonolisib


title: rep1_Oxaliplatin_Sonolisib


title: s.NJA01401.J10


title: rep3_Oxaliplatin_Sonolisib


title: rep3_Oxaliplatin_SF1126


title: s.NJA01401.J12


title: s.NJA01401.J09


title: s.NJA01401.J11


title: rep1_Oxaliplatin_SF1126


title: s.NJA01401.J06


title: s.NJA01401.J07


title: rep2_Oxaliplatin_SF1126


title: s.NJA01401.J04


title: rep2_Oxaliplatin_Olomucin

value: Olomucin


title: s.NJA01401.J05


title: rep1_Oxaliplatin_Olomucin


title: rep3_Oxaliplatin_NMS1286937


title: s.NJA01401.J03


title: rep2_Oxaliplatin_NMS1286937


title: rep1_Oxaliplatin_NMS1286937


title: s.NJA01401.J01


title: m.NJA01401.I22


title: rep3_Oxaliplatin_Mitomycin

value: Mitomycin


title: m.NJA01401.I21


title: m.NJA01401.I20


title: rep3_Oxaliplatin_Methotrexate

description: rep3_Oxaliplatin_MethotrexateReadsPerGene

value: Methotrexate


title: rep1_Oxaliplatin_Mitomycin


title: rep2_Oxaliplatin_Mitomycin


title: s.NJA01401.I16


title: rep1_Oxaliplatin_Methotrexate

description: rep1_Oxaliplatin_MethotrexateReadsPerGene


title: s.NJA01401.I15


title: s.NJA01401.I14


title: rep2_Oxaliplatin_Methotrexate

description: rep2_Oxaliplatin_MethotrexateReadsPerGene


title: s.NJA01401.I11


title: s.NJA01401.I13


title: rep3_Oxaliplatin_Imatininb

value: Imatininb


title: rep3_Oxaliplatin_Olomucin


title: rep2_Oxaliplatin_Imatininb


title: rep1_Oxaliplatin_Imatininb


title: s.NJA01401.I09


title: s.NJA01401.I06


title: s.NJA01401.I08


title: s.NJA01401.J02


title: s.NJA01401.I10


title: rep3_Oxaliplatin_Hymenialdisine

description: rep3_Oxaliplatin_HymenialdisineReadsPerGene

value: Hymenialdisine


title: rep2_Oxaliplatin_Hematoxylin

description: rep2_Oxaliplatin_HematoxylinReadsPerGene

value: Hematoxylin


title: rep2_Oxaliplatin_Hymenialdisine

description: rep2_Oxaliplatin_HymenialdisineReadsPerGene


title: rep1_Oxaliplatin_Hematoxylin

description: rep1_Oxaliplatin_HematoxylinReadsPerGene


title: s.NJA01401.I04


title: rep3_Oxaliplatin_Fluoruracil

description: rep3_Oxaliplatin_FluoruracilReadsPerGene

value: Fluoruracil


title: rep3_Oxaliplatin_Hematoxylin

description: rep3_Oxaliplatin_HematoxylinReadsPerGene


title: s.NJA01401.I07


title: s.NJA01401.I05


title: s.NJA01401.I03


title: s.NJA01401.I01


title: rep2_Oxaliplatin_Fluoruracil

description: rep2_Oxaliplatin_FluoruracilReadsPerGene


title: s.NJA01401.I02


title: rep1_Oxaliplatin_EPIRUBICIN

value: EPIRUBICIN


title: rep1_Oxaliplatin_Fluoruracil

description: rep1_Oxaliplatin_FluoruracilReadsPerGene

value: Oxaliplatin


title: m.NJA01401.H19

value: Multiplet


title: rep3_Oxaliplatin_DMSO

value: DMSO

value: bcr:abl fusion gene


title: rep3_Oxaliplatin_EPIRUBICIN


title: m.NJA01401.H22

value: colon


title: s.NJA01401.H18

value: Singlet


title: s.NJA01401.H15


title: rep3_Oxaliplatin_Decitabine

value: Myelogenous leukemia cells

value: Decitabine


title: rep1_Oxaliplatin_DMSO


title: s.NJA01401.H16


title: s.NJA01401.H14


title: rep2_Oxaliplatin_Decitabine


title: s.NJA01401.H13


title: rep1_Oxaliplatin_Hymenialdisine

description: rep1_Oxaliplatin_HymenialdisineReadsPerGene


title: rep1_Oxaliplatin_Decitabine


title: s.NJA01401.H11


title: rep2_Oxaliplatin_Dacarbazine

description: rep2_Oxaliplatin_DacarbazineReadsPerGene

value: Dacarbazine


title: s.NJA01401.H10


title: m.NJA01401.H20


title: s.NJA01401.H12


title: rep2_Oxaliplatin_EPIRUBICIN


title: m.NJA01401.H21


title: s.NJA01401.H09


title: s.NJA01401.H08


title: rep3_Oxaliplatin_Cytarabine

value: Cytarabine


title: rep1_Oxaliplatin_Cytarabine


title: rep2_Oxaliplatin_DMSO


title: s.NJA01401.H06


title: s.NJA01401.H07


title: rep3_Oxaliplatin_Blebbistatin

description: rep3_Oxaliplatin_BlebbistatinReadsPerGene

value: Blebbistatin


title: rep2_Oxaliplatin_Blebbistatin

description: rep2_Oxaliplatin_BlebbistatinReadsPerGene


title: s.NJA01401.H05


title: s.NJA01401.H04


title: rep3_Oxaliplatin_Dacarbazine

description: rep3_Oxaliplatin_DacarbazineReadsPerGene


title: s.NJA01401.H02


title: s.NJA01401.H03


title: rep3_Oxaliplatin_AT9283


title: rep2_Oxaliplatin_AT9283


title: rep1_Oxaliplatin_AT9283


title: rep1_Oxaliplatin_Blebbistatin

description: rep1_Oxaliplatin_BlebbistatinReadsPerGene


title: s.NJA01401.H01


title: rep1_Oxaliplatin_Dacarbazine

description: rep1_Oxaliplatin_DacarbazineReadsPerGene


title: rep2_Iodotubercidine_YM155

value: Iodotubercidine


title: m.NJA01401.G21


title: rep3_Iodotubercidine_YM155


title: m.NJA01401.G20


title: m.NJA01401.G19


title: rep1_Iodotubercidine_YM155


title: s.NJA01401.G17


title: s.NJA01401.G18


title: rep2_Iodotubercidine_Trametinib

description: rep2_Iodotubercidine_TrametinibReadsPerGene

value: Trametinib


title: rep2_Oxaliplatin_Cytarabine


title: rep3_Iodotubercidine_Trametinib

description: rep3_Iodotubercidine_TrametinibReadsPerGene


title: rep3_Iodotubercidine_Tabloid

description: rep3_Iodotubercidine_TabloidReadsPerGene

value: Tabloid


title: s.NJA01401.G15


title: s.NJA01401.G14


title: rep2_Iodotubercidine_Tabloid

description: rep2_Iodotubercidine_TabloidReadsPerGene


title: s.NJA01401.G13


title: rep1_Iodotubercidine_Tabloid

description: rep1_Iodotubercidine_TabloidReadsPerGene


title: s.NJA01401.G12


title: rep3_Iodotubercidine_Streptozotocin

description: rep3_Iodotubercidine_StreptozotocinReadsPerGene

value: Streptozotocin


title: s.NJA01401.G11


title: rep2_Iodotubercidine_Streptozotocin

description: rep2_Iodotubercidine_StreptozotocinReadsPerGene


title: s.NJA01401.G10


title: s.NJA01401.G09


title: rep3_Iodotubercidine_Sonolisib

description: rep3_Iodotubercidine_SonolisibReadsPerGene

value: Sonolisib


title: rep2_Iodotubercidine_Sonolisib

description: rep2_Iodotubercidine_SonolisibReadsPerGene


title: s.NJA01401.G08


title: s.NJA01401.G16


title: rep1_Iodotubercidine_Trametinib

description: rep1_Iodotubercidine_TrametinibReadsPerGene


title: rep3_Iodotubercidine_SF1126


title: s.NJA01401.G06


title: s.NJA01401.G04


title: rep1_Iodotubercidine_SF1126


title: s.NJA01401.G05


title: s.NJA01401.G07


title: rep2_Iodotubercidine_Olomucin

description: rep2_Iodotubercidine_OlomucinReadsPerGene

value: Olomucin


title: s.NJA01401.G03


title: rep3_Iodotubercidine_Olomucin

description: rep3_Iodotubercidine_OlomucinReadsPerGene


title: rep1_Iodotubercidine_Olomucin

description: rep1_Iodotubercidine_OlomucinReadsPerGene


title: rep3_Iodotubercidine_NMS1286937

description: rep3_Iodotubercidine_NMS1286937ReadsPerGene


title: m.NJA01401.F21


title: m.NJA01401.F22


title: rep2_Iodotubercidine_NMS1286937

description: rep2_Iodotubercidine_NMS1286937ReadsPerGene


title: s.NJA01401.G01


title: rep1_Iodotubercidine_Streptozotocin

description: rep1_Iodotubercidine_StreptozotocinReadsPerGene


title: m.NJA01401.F20


title: s.NJA01401.G02


title: rep1_Iodotubercidine_NMS1286937

description: rep1_Iodotubercidine_NMS1286937ReadsPerGene


title: m.NJA01401.F19


title: rep2_Iodotubercidine_Mitomycin

description: rep2_Iodotubercidine_MitomycinReadsPerGene

value: Mitomycin


title: s.NJA01401.F18


title: rep3_Iodotubercidine_Mitomycin

description: rep3_Iodotubercidine_MitomycinReadsPerGene


title: s.NJA01401.F17


title: rep1_Iodotubercidine_Sonolisib

description: rep1_Iodotubercidine_SonolisibReadsPerGene


title: rep2_Iodotubercidine_SF1126


title: rep1_Iodotubercidine_Mitomycin

description: rep1_Iodotubercidine_MitomycinReadsPerGene


title: s.NJA01401.F16


title: rep3_Iodotubercidine_Methotrexate

description: rep3_Iodotubercidine_MethotrexateReadsPerGene

value: Methotrexate


title: s.NJA01401.F15


title: rep2_Iodotubercidine_Methotrexate

description: rep2_Iodotubercidine_MethotrexateReadsPerGene


title: s.NJA01401.F13


title: rep1_Iodotubercidine_Methotrexate

description: rep1_Iodotubercidine_MethotrexateReadsPerGene


title: s.NJA01401.F14


title: rep3_Iodotubercidine_Imatininb

description: rep3_Iodotubercidine_ImatininbReadsPerGene

value: Imatininb


title: s.NJA01401.F12


title: rep2_Iodotubercidine_Imatininb

description: rep2_Iodotubercidine_ImatininbReadsPerGene

value: bcr:abl fusion gene


title: s.NJA01401.F11

value: colon


title: rep1_Iodotubercidine_Imatininb

description: rep1_Iodotubercidine_ImatininbReadsPerGene


title: rep3_Iodotubercidine_Hymenialdisine

description: rep3_Iodotubercidine_HymenialdisineReadsPerGene

value: Hymenialdisine


title: s.NJA01401.F10

value: Singlet


title: s.NJA01401.F09


title: s.NJA01401.F08


title: rep1_Iodotubercidine_Hymenialdisine

description: rep1_Iodotubercidine_HymenialdisineReadsPerGene

value: Myelogenous leukemia cells


title: s.NJA01401.F07


title: rep2_Iodotubercidine_Hematoxylin

description: rep2_Iodotubercidine_HematoxylinReadsPerGene

value: Hematoxylin


title: rep1_Iodotubercidine_Hematoxylin

description: rep1_Iodotubercidine_HematoxylinReadsPerGene


title: s.NJA01401.F04


title: rep3_Iodotubercidine_Fluoruracil

description: rep3_Iodotubercidine_FluoruracilReadsPerGene

value: Fluoruracil


title: s.NJA01401.F06


title: s.NJA01401.F05


title: rep2_Iodotubercidine_Fluoruracil

description: rep2_Iodotubercidine_FluoruracilReadsPerGene


title: s.NJA01401.F03


title: s.NJA01401.F02


title: s.NJA01401.F01


title: rep3_Iodotubercidine_EPIRUBICIN

description: rep3_Iodotubercidine_EPIRUBICINReadsPerGene

value: EPIRUBICIN


title: rep2_Iodotubercidine_EPIRUBICIN

description: rep2_Iodotubercidine_EPIRUBICINReadsPerGene

value: Iodotubercidine


title: m.NJA01401.E22

value: Multiplet


title: rep1_Iodotubercidine_EPIRUBICIN

description: rep1_Iodotubercidine_EPIRUBICINReadsPerGene


title: m.NJA01401.E20


title: m.NJA01401.E21


title: rep3_Iodotubercidine_DMSO

value: DMSO


title: m.NJA01401.E19


title: rep2_Iodotubercidine_Hymenialdisine

description: rep2_Iodotubercidine_HymenialdisineReadsPerGene


title: rep2_Iodotubercidine_DMSO


title: rep3_Iodotubercidine_Hematoxylin

description: rep3_Iodotubercidine_HematoxylinReadsPerGene


title: s.NJA01401.E18


title: s.NJA01401.E17


title: rep3_Iodotubercidine_Decitabine

description: rep3_Iodotubercidine_DecitabineReadsPerGene

value: Decitabine


title: s.NJA01401.E16


title: rep1_Iodotubercidine_Decitabine

description: rep1_Iodotubercidine_DecitabineReadsPerGene


title: s.NJA01401.E15


title: rep1_Iodotubercidine_Fluoruracil

description: rep1_Iodotubercidine_FluoruracilReadsPerGene


title: s.NJA01401.E14


title: rep2_Iodotubercidine_Decitabine

description: rep2_Iodotubercidine_DecitabineReadsPerGene


title: rep3_Iodotubercidine_Dacarbazine

description: rep3_Iodotubercidine_DacarbazineReadsPerGene

value: Dacarbazine


title: s.NJA01401.E13


title: s.NJA01401.E10


title: s.NJA01401.E11


title: rep2_Iodotubercidine_Cytarabine

description: rep2_Iodotubercidine_CytarabineReadsPerGene

value: Cytarabine


title: s.NJA01401.E12


title: rep2_Iodotubercidine_Dacarbazine

description: rep2_Iodotubercidine_DacarbazineReadsPerGene


title: rep1_Iodotubercidine_Dacarbazine

description: rep1_Iodotubercidine_DacarbazineReadsPerGene


title: rep3_Iodotubercidine_Cytarabine

description: rep3_Iodotubercidine_CytarabineReadsPerGene


title: s.NJA01401.E08


title: rep2_Iodotubercidine_Blebbistatin

description: rep2_Iodotubercidine_BlebbistatinReadsPerGene

value: Blebbistatin


title: s.NJA01401.E07


title: rep1_Iodotubercidine_DMSO


title: rep1_Iodotubercidine_Cytarabine

description: rep1_Iodotubercidine_CytarabineReadsPerGene


title: s.NJA01401.E06


title: rep1_Iodotubercidine_Blebbistatin

description: rep1_Iodotubercidine_BlebbistatinReadsPerGene


title: s.NJA01401.E09


title: rep3_Iodotubercidine_Blebbistatin

description: rep3_Iodotubercidine_BlebbistatinReadsPerGene


title: rep3_Iodotubercidine_AT9283


title: s.NJA01401.E05


title: s.NJA01401.E04


title: s.NJA01401.E03


title: rep2_Iodotubercidine_AT9283


title: s.NJA01401.E02


title: rep3_Imatininb_YM155


title: s.NJA01401.E01


title: rep2_Imatininb_YM155


title: rep1_Imatininb_YM155


title: m.NJA01401.D23


title: rep3_Imatininb_Trametinib

value: Trametinib


title: m.NJA01401.D21


title: rep2_Imatininb_Trametinib

value: Imatininb


title: m.NJA01401.D20


title: rep1_Imatininb_Trametinib

value: bcr:abl fusion gene


title: m.NJA01401.D19

value: colon


title: s.NJA01401.D18


title: rep3_Imatininb_Tabloid

value: Tabloid


title: rep2_Imatininb_Tabloid


title: s.NJA01401.D17

value: Singlet


title: rep1_Imatininb_Tabloid

value: Myelogenous leukemia cells


title: s.NJA01401.D16


title: s.NJA01401.D13


title: s.NJA01401.D14


title: s.NJA01401.D12


title: rep1_Iodotubercidine_AT9283


title: s.NJA01401.D11


title: rep3_Imatininb_Sonolisib

value: Sonolisib


title: rep1_Imatininb_Streptozotocin

description: rep1_Imatininb_StreptozotocinReadsPerGene

value: Streptozotocin


title: s.NJA01401.D10


title: rep3_Imatininb_SF1126


title: rep2_Imatininb_Streptozotocin

description: rep2_Imatininb_StreptozotocinReadsPerGene


title: rep1_Imatininb_Sonolisib


title: m.NJA01401.D22


title: s.NJA01401.D09


title: s.NJA01401.D07


title: rep1_Imatininb_SF1126


title: s.NJA01401.D06


title: rep3_Imatininb_Olomucin

value: Olomucin


title: s.NJA01401.D04


title: s.NJA01401.D02


title: rep2_Imatininb_NMS1286937


title: rep2_Imatininb_Sonolisib


title: s.NJA01401.D01


title: s.NJA01401.D15


title: rep3_Imatininb_NMS1286937


title: rep1_Imatininb_NMS1286937


title: rep3_Imatininb_Mitomycin

value: Mitomycin


title: s.NJA01401.D03


title: m.NJA01401.C20

value: Multiplet


title: rep2_Imatininb_SF1126


title: m.NJA01401.C23


title: m.NJA01401.C19


title: rep3_Imatininb_Methotrexate

value: Methotrexate


title: s.NJA01401.C16


title: rep2_Imatininb_Methotrexate


title: s.NJA01401.C17


title: rep1_Imatininb_Olomucin


title: s.NJA01401.D05


title: rep1_Imatininb_Methotrexate


title: rep2_Imatininb_Imatininb


title: rep3_Imatininb_Streptozotocin

description: rep3_Imatininb_StreptozotocinReadsPerGene


title: rep3_Imatininb_Imatininb


title: rep2_Imatininb_Olomucin


title: rep1_Imatininb_Imatininb


title: rep2_Imatininb_Mitomycin


title: s.NJA01401.C12


title: s.NJA01401.C14


title: rep2_Imatininb_Hymenialdisine

description: rep2_Imatininb_HymenialdisineReadsPerGene

value: Hymenialdisine


title: s.NJA01401.C11


title: s.NJA01401.C10


title: rep1_Imatininb_Hymenialdisine

description: rep1_Imatininb_HymenialdisineReadsPerGene


title: rep3_Imatininb_Hymenialdisine

description: rep3_Imatininb_HymenialdisineReadsPerGene


title: s.NJA01401.C18


title: rep1_Imatininb_Mitomycin


title: rep2_Imatininb_Hematoxylin

value: Hematoxylin


title: rep3_Imatininb_Hematoxylin


title: s.NJA01401.C09


title: rep3_Imatininb_Fluoruracil

value: Fluoruracil


title: rep1_Imatininb_Hematoxylin


title: s.NJA01401.C06


title: s.NJA01401.C07


title: rep2_Imatininb_Fluoruracil


title: s.NJA01401.C05


title: s.NJA01401.C03


title: rep1_Imatininb_Fluoruracil


title: s.NJA01401.C02


title: s.NJA01401.C01


title: rep3_Imatininb_EPIRUBICIN

value: EPIRUBICIN


title: s.NJA01401.C13


title: m.NJA01401.B22


title: rep3_Imatininb_DMSO

value: DMSO


title: rep2_Imatininb_DMSO

value: Imatininb


title: rep1_Imatininb_EPIRUBICIN

value: bcr:abl fusion gene


title: rep1_Imatininb_DMSO


title: m.NJA01401.B23

value: colon


title: m.NJA01401.B19


title: s.NJA01401.B18


title: rep3_Imatininb_Decitabine

value: Decitabine


title: rep2_Imatininb_Decitabine


title: s.NJA01401.C04

value: Singlet


title: s.NJA01401.B17


title: s.NJA01401.B16


title: rep2_Imatininb_Dacarbazine

value: Myelogenous leukemia cells

value: Dacarbazine


title: s.NJA01401.B15


title: s.NJA01401.B14


title: rep3_Imatininb_Dacarbazine


title: s.NJA01401.B13


title: rep3_Imatininb_Cytarabine

value: Cytarabine


title: rep1_Imatininb_Dacarbazine


title: s.NJA01401.B11


title: s.NJA01401.B10


title: rep1_Imatininb_Cytarabine


title: s.NJA01401.B05


title: s.NJA01401.B06


title: s.NJA01401.B08


title: s.NJA01401.B07


title: SZ12_S9

city: Helsinki

first: Iiris

last: Hovatta

address: Haartmaninkatu 3

department: Department of Psychology and Logopedics

country: Finland

institute: University of Helsinki

description: Monozygotic twin with schizophrenia diagnosis and medication

data_processing:
Reads were aligned to human genome hg38 using STAR aligner  (Dobin et al. 2013) and annotated to genes using HTSeq (Anders et al. 2015).
Supplementary_files_format_and_content: Tab delimeted text file containing unnormalized (raw) read counts per feature.

source_name: hiPSC-derived cortical-like neurons

growth_protocol: The primary cells were reprogrammed with Cytotune 2.0 iPS Sendai Reprogramming Kit for Oct4, Sox2, Klf4, and c-myc. The emerged colonies were individually subcloned. For differentiation, iPSCs were cultured in feeder-free conditions with Matrigel-coating and Essential 8 culture medium. iPSCs were differentitated to neurons with sphere method originally from Hicks et al. (2009). First, neural induction was performed by introducing dual SMAD inhibition for 10 days, and continued with sphere culture for around 3 months. The spheres were dissociated and plated as monolayer for one week maturation for RNA isolation.

extract_protocol:
Total RNA was extracted using RNeasy Mini Kit. The RNA quality was analyzed on the Agilent 2100 Bioanalyzer™ using an RNA6000 assay.
Sequencing libraries were prepared with Illumina NextSeq and SureSelect Strand Specific RNA Seq kits.

treatment_protocol: No separate treatment applied.

tag: hipsc source

value: skin fibroblasts

tag: group status

value: Pair 5, affected twin

tag: patient age

tag: patient gender

value: female

tag: disease status

value: schizophrenia


title: SZ18_S21

description: Monozygotic twin without schizophrenia diagnosis

value: Pair 6, unaffected twin

value: male

value: healthy


title: SZ17_S19

value: Pair 6, affected twin


title: s.NJA01401.B12


title: s.NJA01401.B04


title: s.NJA01401.B03


title: SZ11_S7

value: Pair 5, unaffected twin


title: SZ10_S15

value: Pair 4, unaffected twin


title: SZ9_S13

value: Pair 4, affected twin


title: SZ7_S25

value: Pair 3, affected twin


title: rep3_Imatininb_Blebbistatin

value: Imatininb

value: Blebbistatin

value: bcr:abl fusion gene


title: rep2_Imatininb_Blebbistatin

value: Myelogenous leukemia cells


title: s.NJA01401.B02

value: colon

value: Singlet


title: s.NJA01401.B01


title: m.NJA01401.A23

value: Multiplet


title: SZ1_S1

value: skin fibroblasts

value: Pair 1, unaffected twin

value: female


title: SZ2_S3

value: Pair 1, affected twin

value: schizophrenia


title: m.NJA01401.A20


title: m.NJA01401.A19


title: rep1_Imatininb_Decitabine

value: Decitabine


title: rep2_Imatininb_EPIRUBICIN

value: EPIRUBICIN


title: rep3_YM155_YM155


title: rep2_Imatininb_Cytarabine

value: Cytarabine


title: s.NJA01401.B09


title: SZ8_S27

value: Pair 3, unaffected twin

value: male

value: healthy


title: s.NJA01401.A16


title: rep1_YM155_YM155


title: s.NJA01401.A15


title: s.NJA01401.A14


title: rep2_YM155_Trametinib

value: Trametinib


title: s.NJA01401.A13


title: rep3_YM155_Tabloid

value: Tabloid

value: bcr:abl fusion gene


title: rep1_Imatininb_Blebbistatin

value: Myelogenous leukemia cells

value: Imatininb

value: Blebbistatin


title: rep3_YM155_Trametinib


title: rep3_Imatininb_AT9283


title: rep1_YM155_Trametinib


title: s.NJA01401.A12

value: colon

value: Singlet


title: rep3_H7_YM155


title: rep2_Imatininb_AT9283


title: rep1_Imatininb_AT9283


title: s.NJA01401.A11


title: s.NJA01401.A07


title: s.NJA01401.A08


title: s.NJA01401.A18


title: s.NJA01401.A09


title: s.NJA01401.A17


title: rep2_YM155_YM155


title: rep2_H7_YM155


title: s.NJA01401.A04


title: s.NJA01401.A05


title: rep1_H7_YM155


title: rep3_H7_Trametinib


title: rep2_H7_Trametinib


title: s.NJA01401.A02


title: rep1_H7_Trametinib


title: rep3_H7_Tabloid


title: s.NJA01401.A10


title: rep2_H7_Tabloid


title: s.NJA01203.P08


title: s.NJA01203.P10


title: s.NJA01401.A06


title: rep1_H7_Tabloid


title: rep1_H7_Streptozotocin

value: Streptozotocin


title: s.NJA01203.P06


title: s.NJA01203.P07


title: rep3_H7_Streptozotocin


title: m.NJA01203.P02

value: Multiplet


title: m.NJA01203.P01


title: rep3_H7_Sonolisib

value: Sonolisib


title: s.NJA01203.O08


title: s.NJA01203.O09


title: m.NJA01203.P03


title: s.NJA01401.A01


title: s.NJA01203.O07


title: s.NJA01203.O06


title: rep1_H7_Sonolisib


title: rep2_H7_SF1126


title: rep2_H7_Sonolisib


title: rep3_H7_SF1126


title: rep1_H7_SF1126


title: m.NJA01203.O02


title: rep2_H7_Streptozotocin


title: rep2_H7_Olomucin

value: Olomucin


title: m.NJA01203.O01


title: rep3_H7_Olomucin


title: rep1_H7_Olomucin


title: s.NJA01203.N10


title: s.NJA01203.N08


title: rep2_H7_NMS1286937


title: rep3_H7_NMS1286937


title: s.NJA01203.M10


title: m.NJA01203.N02


title: rep3_H7_Mitomycin

value: Mitomycin


title: m.NJA01203.N01


title: s.NJA01203.O05


title: rep2_H7_Mitomycin


title: s.NJA01203.M07


title: rep2_H7_Methotrexate

value: Methotrexate


title: rep3_H7_Methotrexate


title: m.NJA01203.M02


title: m.NJA01203.M03


title: rep1_H7_Methotrexate


title: s.NJA01203.M05


title: rep2_H7_Imatininb


title: rep1_H7_Imatininb


title: rep3_H7_Imatininb


title: rep3_H7_Hymenialdisine

value: Hymenialdisine


title: s.NJA01203.L08


title: m.NJA01203.N03


title: s.NJA01203.M09


title: rep1_H7_NMS1286937


title: s.NJA01203.L07


title: m.NJA01203.L03


title: s.NJA01203.L06


title: rep1_H7_Hymenialdisine


title: rep2_H7_Hymenialdisine


title: s.NJA01203.K09


title: s.NJA01401.C08


title: rep1_H7_Mitomycin


title: m.NJA01203.L01


title: rep3_H7_Hematoxylin

value: Hematoxylin


title: s.NJA01401.C15


title: rep1_H7_Hematoxylin


title: s.NJA01203.K05


title: s.NJA01203.K06


title: s.NJA01203.L10


title: rep2_H7_Fluoruracil

value: Fluoruracil


title: rep3_H7_Fluoruracil


title: rep1_H7_Fluoruracil


title: m.NJA01203.K03


title: s.NJA01203.K04


title: m.NJA01203.K02


title: rep3_H7_EPIRUBICIN

value: EPIRUBICIN


title: m.NJA01203.K01


title: rep2_H7_EPIRUBICIN


title: s.NJA01203.J10


title: rep3_H7_DMSO

value: DMSO


title: s.NJA01203.J09


title: rep2_H7_Hematoxylin

value: bcr:abl fusion gene


title: rep1_H7_EPIRUBICIN

value: Myelogenous leukemia cells


title: s.NJA01203.J07


title: rep3_H7_Decitabine

value: Decitabine


title: rep1_H7_DMSO


title: m.NJA01203.J03


title: s.NJA01203.I05


title: rep2_H7_Dacarbazine

value: Dacarbazine


title: rep2_H7_Decitabine


title: s.NJA01203.J04

value: colon


title: rep3_H7_Dacarbazine


title: rep1_H7_Decitabine


title: m.NJA01203.J02


title: s.NJA01203.I08

value: Singlet


title: rep1_H7_Cytarabine

value: Cytarabine


title: s.NJA01203.I04


title: m.NJA01203.I03

value: Multiplet


title: rep2_H7_DMSO


title: rep3_H7_Cytarabine


title: rep1_H7_Dacarbazine


title: s.NJA01203.H07


title: rep2_H7_Cytarabine


title: rep3_H7_AT9283


title: m.NJA01203.I01


title: rep3_H7_Blebbistatin

value: Blebbistatin


title: m.NJA01203.I02


title: s.NJA01203.J06


title: s.NJA01203.H09


title: rep1_H7_Blebbistatin


title: rep2_H7_AT9283


title: s.NJA01203.I09


title: s.NJA01203.H08


title: rep2_H7_Blebbistatin


title: rep1_H7_AT9283


title: rep2_Gimeracil_YM155

value: Gimeracil


title: rep3_Gimeracil_Trametinib

value: Trametinib


title: rep2_Gimeracil_Trametinib


title: s.NJA01203.H05


title: s.NJA01203.G08


title: s.NJA01203.G06


title: rep3_Gimeracil_YM155


title: rep1_Gimeracil_Trametinib


title: m.NJA01203.H02


title: m.NJA01203.H03


title: rep1_Gimeracil_YM155


title: s.NJA01203.H10


title: m.NJA01203.H01


title: rep2_Gimeracil_Tabloid

value: Tabloid


title: s.NJA01203.G04


title: m.NJA01203.G03


title: rep3_Gimeracil_Tabloid


title: s.NJA01203.G05


title: m.NJA01203.G02


title: rep3_Gimeracil_Streptozotocin

description: rep3_Gimeracil_StreptozotocinReadsPerGene

value: Streptozotocin


title: rep1_Gimeracil_Streptozotocin

description: rep1_Gimeracil_StreptozotocinReadsPerGene


title: s.NJA01203.F07


title: rep1_Gimeracil_Tabloid


title: rep2_Gimeracil_Streptozotocin

description: rep2_Gimeracil_StreptozotocinReadsPerGene


title: s.NJA01203.F10


title: s.NJA01203.F04


title: Normal VZV- 19

city: Burlington

first: Seth

last: Frietze

state: Vermont

address: 106 Carrigan Drive

department: Biomedical and Health Sciences

country: USA

institute: University of Vermont

data_processing:
Basecalls performed using Real-Time Analysis (RTA) software v2.
Quality control of reads were performed using FASTQC.
Raw reads were aligned to a hg38 reference index based off of the human whole transcriptome assay which measures 19,283 genes (21,111 probes) using TempO-SeqR and the bowtie aligner, allowing for up to 2 mismatches in the 50-nucleotide target sequence.
Genome_build: hg38
Supplementary_files_format_and_content: raw counts matrix of probes for the human whole transcriptome.

source_name: temporal artery

growth_protocol: De-identified formalin-fixed, paraffin-embedded (FFPE) temporal artery (TA) biopsy specimens from patients >50 years of age with histopathologically confirmed giant cell arteritis (GCA), as well as 31 control TAs removed postmortem from subjects.

extract_protocol:
FFPE tissue was lysed, annealed, ligated, and amplified according to manufacturer’s instructions (BioSpyder Technologies, Carlsbad, CA).
Libraries were prepared according to manufacturer’s instructions (BioSpyder Technologies, Carlsbad, CA).
Targeted RNA-seq

treatment_protocol: Unstained tissue sections from each artery were measured, scraped (10mm2 of tissue per subject), and placed into polymerase chain reaction (PCR) tubes containing TempO-Seq 1X Lysis Buffer1X Lysis Buffer for FFPE samples (BioSpyder Technologies, Carlsbad, CA).

tag: gca

value: negative

tag: vzv antigen


title: Normal VZV- 20


title: s.NJA01203.F05


title: m.NJA01203.G01


title: Normal VZV- 18


title: m.NJA01203.F03


title: s.NJA01203.E08


title: rep2_Gimeracil_Sonolisib

value: Sonolisib


title: m.NJA01203.F01


title: s.NJA01203.E07


title: rep1_Gimeracil_Sonolisib


title: rep3_Gimeracil_Sonolisib


title: s.NJA01203.E06


title: s.NJA01203.E11


title: Normal VZV- 17


title: s.NJA01203.E10


title: s.NJA01203.D07


title: Normal VZV- 16


title: rep3_Gimeracil_SF1126


title: s.NJA01203.E04


title: m.NJA01203.E01


title: rep1_Gimeracil_SF1126


title: Normal VZV- 15


title: Normal VZV- 14


title: s.NJA01203.D09


title: s.NJA01203.C05


title: Normal VZV- 13


title: s.NJA01203.D06


title: m.NJA01203.D03


title: Normal VZV- 12


title: s.NJA01203.B06


title: s.NJA01203.B04


title: m.NJA01203.D01


title: Normal VZV- 7


title: rep3_Gimeracil_Olomucin

value: Olomucin


title: s.NJA01203.C11


title: m.NJA01203.B03


title: Normal VZV- 11


title: Normal VZV- 10


title: rep1_Gimeracil_Olomucin


title: s.NJA01203.C08


title: m.NJA01203.B02


title: rep1_Gimeracil_NMS1286937


title: rep2_Gimeracil_SF1126


title: rep2_Gimeracil_NMS1286937


title: m.NJA01203.C03


title: Normal VZV- 9


title: s.NJA01203.B10


title: Normal VZV- 8


title: s.NJA01203.A06


title: Normal VZV- 2


title: s.NJA01203.B09


title: rep3_Gimeracil_NMS1286937


title: s.NJA01203.B07


title: s.NJA01203.C10


title: Normal VZV- 6


title: rep2_Gimeracil_Olomucin


title: s.NJA01203.A11


title: Normal VZV- 4


title: m.NJA01201.P24


title: m.NJA01201.P23


title: m.NJA01201.P22


title: Normal VZV- 1


title: s.NJA01203.A09


title: rep3_Gimeracil_Mitomycin

value: Mitomycin


title: Normal VZV+ 11

value: positive


title: rep3_Gimeracil_Methotrexate

value: Myelogenous leukemia cells

value: Methotrexate

value: bcr:abl fusion gene


title: Normal VZV- 3


title: m.NJA01203.A03

value: colon


title: s.NJA01203.A04

value: Singlet


title: m.NJA01201.P20


title: rep2_Gimeracil_Mitomycin


title: s.NJA01203.A08


title: rep1_Gimeracil_Mitomycin


title: Normal VZV+ 10


title: Normal VZV+ 9


title: Normal VZV- 5


title: s.NJA01201.P16


title: s.NJA01201.P15


title: rep3_Gimeracil_Imatininb

value: Imatininb


title: s.NJA01201.P18


title: rep1_Gimeracil_Methotrexate


title: m.NJA01201.P21

value: Multiplet


title: rep2_Gimeracil_Methotrexate


title: m.NJA01201.P19


title: s.NJA01201.P13


title: s.NJA01201.P17


title: s.NJA01201.P14


title: rep1_Gimeracil_Imatininb


title: Normal VZV+ 6


title: Normal VZV+ 8


title: Normal VZV+ 5


title: Normal VZV+ 7


title: rep2_Gimeracil_Imatininb


title: s.NJA01201.P09


title: rep2_Gimeracil_Hymenialdisine

description: rep2_Gimeracil_HymenialdisineReadsPerGene

value: Hymenialdisine


title: rep3_Gimeracil_Hymenialdisine

description: rep3_Gimeracil_HymenialdisineReadsPerGene

value: Gimeracil


title: Normal VZV+ 4


title: Normal VZV+ 3


title: m.NJA01201.O23


title: s.NJA01201.P03


title: m.NJA01201.O21


title: m.NJA01201.O22


title: m.NJA01201.O20


title: m.NJA01201.O19


title: Normal VZV+ 1


title: rep1_Gimeracil_Hymenialdisine

description: rep1_Gimeracil_HymenialdisineReadsPerGene


title: s.NJA01201.O18


title: GCA+VZV- 20


title: s.NJA01201.P06


title: s.NJA01201.O17


title: s.NJA01201.P07


title: rep3_Gimeracil_Hematoxylin

value: Hematoxylin


title: s.NJA01201.O11


title: GCA+VZV- 19


title: s.NJA01201.O13


title: rep2_Gimeracil_Hematoxylin


title: s.NJA01201.O10


title: GCA+VZV- 17


title: GCA+VZV- 18


title: Normal VZV+ 2


title: s.NJA01201.O09


title: GCA+VZV- 14


title: rep1_Gimeracil_Hematoxylin


title: s.NJA01201.O07


title: s.NJA01201.O06


title: GCA+VZV- 16


title: s.NJA01201.O05


title: rep3_Gimeracil_Fluoruracil

value: Fluoruracil


title: GCA+VZV- 15


title: s.NJA01201.O01


title: s.NJA01201.O04


title: m.NJA01201.N24


title: GCA+VZV- 13


title: GCA+VZV- 11


title: m.NJA01201.N21


title: rep2_Gimeracil_Fluoruracil


title: GCA+VZV- 9


title: rep3_Gimeracil_EPIRUBICIN

value: EPIRUBICIN


title: s.NJA01201.N15


title: m.NJA01201.N22


title: GCA+VZV- 12

value: negative


title: m.NJA01201.N19


title: s.NJA01201.N12


title: m.NJA01201.N23


title: rep1_Gimeracil_Fluoruracil


title: s.NJA01201.N18


title: m.NJA01201.N20


title: GCA+VZV- 10


title: rep2_Gimeracil_EPIRUBICIN


title: GCA+VZV- 8


title: s.NJA01201.N04


title: s.NJA01201.N06


title: rep3_Gimeracil_DMSO

value: DMSO


title: GCA+VZV- 6


title: GCA+VZV- 7


title: s.NJA01201.N03


title: rep2_Gimeracil_DMSO


title: s.NJA01201.N05


title: m.NJA01201.M24


title: s.NJA01201.N16


title: GCA+VZV- 5


title: s.NJA01201.N02


title: rep3_Gimeracil_Decitabine

value: Decitabine


title: m.NJA01201.M23


title: rep1_Gimeracil_DMSO


title: GCA+VZV- 4


title: m.NJA01201.M22


title: rep2_Gimeracil_Decitabine


title: m.NJA01201.M20


title: m.NJA01201.M19


title: s.NJA01201.N07


title: GCA+VZV- 3


title: rep1_Gimeracil_Decitabine


title: GCA+VZV- 2


title: rep1_Gimeracil_EPIRUBICIN


title: s.NJA01201.M17


title: s.NJA01201.M15


title: GCA+VZV- 1


title: s.NJA01201.M14


title: rep3_Gimeracil_Dacarbazine

value: Dacarbazine


title: s.NJA01201.M13


title: rep2_Gimeracil_Dacarbazine


title: s.NJA01201.M11


title: GCA+VZV+ 20

value: positive


title: s.NJA01201.M09


title: rep1_Gimeracil_Dacarbazine

value: Myelogenous leukemia cells


title: GCA+VZV+ 18


title: rep3_Gimeracil_Cytarabine

value: Cytarabine


title: s.NJA01201.M08


title: s.NJA01201.M07


title: s.NJA01201.M16


title: GCA+VZV+ 17


title: s.NJA01201.M03


title: rep2_Gimeracil_Cytarabine

value: bcr:abl fusion gene


title: s.NJA01201.M02


title: GCA+VZV+ 16


title: rep1_Gimeracil_Cytarabine


title: s.NJA01201.M01


title: m.NJA01201.L24


title: m.NJA01201.L23


title: GCA+VZV+ 14


title: m.NJA01201.L20


title: GCA+VZV+ 19


title: s.NJA01201.M12


title: m.NJA01201.L19


title: m.NJA01201.L21


title: GCA+VZV+ 15


title: GCA+VZV+ 13


title: rep1_Gimeracil_Blebbistatin

value: Blebbistatin


title: rep3_Gimeracil_Blebbistatin


title: GCA+VZV+ 12


title: s.NJA01201.L17

value: Singlet


title: s.NJA01201.L15


title: s.NJA01201.L12


title: GCA+VZV+ 11


title: rep3_Gimeracil_AT9283


title: rep2_Gimeracil_AT9283


title: m.NJA01201.L22


title: GCA+VZV+ 10


title: s.NJA01201.L09


title: GCA+VZV+ 9


title: s.NJA01201.L07


title: s.NJA01201.L06


title: rep2_Gimeracil_Blebbistatin


title: GCA+VZV+ 8


title: rep3_Gemcitabine_YM155

value: Gemcitabine


title: rep1_Gimeracil_AT9283


title: s.NJA01201.L04


title: s.NJA01201.L03


title: GCA+VZV+ 7


title: s.NJA01201.L18


title: m.NJA01201.K24

value: Multiplet


title: s.NJA01201.L01


title: GCA+VZV+ 6


title: rep1_Gemcitabine_YM155


title: GCA+VZV+ 5


title: m.NJA01201.K22


title: s.NJA01201.L10


title: rep3_Gemcitabine_Trametinib

value: Trametinib


title: GCA+VZV+ 4


title: s.NJA01201.L05


title: rep2_Gemcitabine_Trametinib


title: GCA+VZV+ 3


title: rep1_Gemcitabine_Trametinib


title: s.NJA01201.K17


title: s.NJA01201.K18


title: s.NJA01201.K16


title: s.NJA01201.K13


title: GCA+VZV+ 2


title: s.NJA01201.K15


title: GCA+VZV+ 1


title: s.NJA01201.K10


title: rep3_Gemcitabine_Tabloid

value: Tabloid


title: rep2_Gemcitabine_YM155


title: s.NJA01201.K09


title: m.NJA01201.K23


title: m.NJA01201.K21


title: s.NJA01201.K07


title: s.NJA01201.K04


title: rep1_Gemcitabine_Tabloid


title: s.NJA01201.K05


title: s.NJA01201.K02


title: rep1_Gemcitabine_Streptozotocin

description: rep1_Gemcitabine_StreptozotocinReadsPerGene

value: Streptozotocin


title: rep3_Gemcitabine_Streptozotocin

description: rep3_Gemcitabine_StreptozotocinReadsPerGene


title: m.NJA01201.K19


title: rep2_Gemcitabine_Streptozotocin

description: rep2_Gemcitabine_StreptozotocinReadsPerGene


title: m.NJA01201.J23


title: rep1_Gemcitabine_Sonolisib

value: Sonolisib


title: s.NJA01201.K01


title: rep2_Gemcitabine_Sonolisib


title: rep2_Gemcitabine_Tabloid


title: m.NJA01201.J21


title: rep3_Gemcitabine_SF1126


title: m.NJA01201.J20


title: rep2_Gemcitabine_SF1126


title: m.NJA01201.J19


title: rep3_Gemcitabine_Olomucin

value: Olomucin


title: rep1_Gemcitabine_SF1126


title: s.NJA01201.J12


title: s.NJA01201.J13


title: s.NJA01201.J11


title: rep1_Gemcitabine_Olomucin


title: s.NJA01201.J10


title: rep2_Gemcitabine_NMS1286937


title: s.NJA01201.J08


title: rep3_Gemcitabine_Sonolisib


title: rep1_Gemcitabine_NMS1286937


title: rep3_Gemcitabine_NMS1286937


title: rep3_Gemcitabine_Mitomycin

value: Mitomycin


title: s.NJA01201.J07


title: s.NJA01201.J05


title: s.NJA01201.K03


title: rep2_Gemcitabine_Olomucin


title: s.NJA01201.J04


title: rep2_Gemcitabine_Mitomycin


title: rep1_Gemcitabine_Mitomycin


title: s.NJA01201.J03


title: rep3_Gemcitabine_Methotrexate

description: rep3_Gemcitabine_MethotrexateReadsPerGene

value: Methotrexate


title: s.NJA01201.J02


title: rep2_Gemcitabine_Methotrexate

description: rep2_Gemcitabine_MethotrexateReadsPerGene


title: s.NJA01201.J14


title: m.NJA01201.I24


title: rep3_Gemcitabine_Imatininb

value: Imatininb


title: m.NJA01201.I22


title: rep1_Gemcitabine_Methotrexate

description: rep1_Gemcitabine_MethotrexateReadsPerGene


title: rep2_Gemcitabine_Imatininb


title: m.NJA01201.I21


title: s.NJA01201.J01


title: s.NJA01201.I16


title: rep1_Gemcitabine_Hematoxylin

description: rep1_Gemcitabine_HematoxylinReadsPerGene

value: Hematoxylin


title: s.NJA01201.I14


title: m.NJA01201.I19


title: rep3_Gemcitabine_Hematoxylin

description: rep3_Gemcitabine_HematoxylinReadsPerGene


title: rep1_Gemcitabine_Hymenialdisine

description: rep1_Gemcitabine_HymenialdisineReadsPerGene

value: Hymenialdisine


title: s.NJA01201.I09


title: s.NJA01201.I18


title: s.NJA01201.I07


title: m.NJA01201.I20


title: s.NJA01201.I13


title: rep1_Gemcitabine_Imatininb

value: Myelogenous leukemia cells


title: rep2_Gemcitabine_Hematoxylin

description: rep2_Gemcitabine_HematoxylinReadsPerGene


title: rep3_Gemcitabine_Hymenialdisine

description: rep3_Gemcitabine_HymenialdisineReadsPerGene


title: s.NJA01201.I15


title: rep2_Gemcitabine_EPIRUBICIN

value: EPIRUBICIN


title: rep3_Gemcitabine_DMSO

value: DMSO

value: bcr:abl fusion gene


title: rep2_Gemcitabine_Fluoruracil

description: rep2_Gemcitabine_FluoruracilReadsPerGene

value: Fluoruracil


title: s.NJA01201.I04

value: Singlet


title: rep2_Gemcitabine_Hymenialdisine

description: rep2_Gemcitabine_HymenialdisineReadsPerGene

value: Gemcitabine


title: rep3_Gemcitabine_EPIRUBICIN


title: s.NJA01201.I06


title: s.NJA01201.I03


title: rep1_Gemcitabine_EPIRUBICIN


title: rep1_Gemcitabine_Fluoruracil

description: rep1_Gemcitabine_FluoruracilReadsPerGene


title: rep3_Gemcitabine_Fluoruracil

description: rep3_Gemcitabine_FluoruracilReadsPerGene


title: s.NJA01201.I10


title: s.NJA01201.I05


title: m.NJA01201.H23

value: Multiplet


title: rep2_Gemcitabine_Decitabine

value: Decitabine


title: m.NJA01201.H22


title: rep1_Gemcitabine_Decitabine


title: rep1_Gemcitabine_DMSO


title: rep3_Gemcitabine_Dacarbazine

description: rep3_Gemcitabine_DacarbazineReadsPerGene

value: Dacarbazine


title: rep1_Gemcitabine_Dacarbazine

description: rep1_Gemcitabine_DacarbazineReadsPerGene


title: rep3_Gemcitabine_Decitabine


title: m.NJA01201.H24


title: rep2_Gemcitabine_DMSO


title: rep3_Gemcitabine_Cytarabine

value: Cytarabine


title: rep2_Gemcitabine_Dacarbazine

description: rep2_Gemcitabine_DacarbazineReadsPerGene


title: s.NJA01201.H17


title: s.NJA01201.H18


title: s.NJA01201.H16


title: rep2_Gemcitabine_Cytarabine


title: m.NJA01201.H20


title: s.NJA01201.H14


title: m.NJA01201.H19


title: s.NJA01201.I01


title: m.NJA01201.H21


title: rep3_Gemcitabine_Blebbistatin

description: rep3_Gemcitabine_BlebbistatinReadsPerGene

value: Blebbistatin


title: rep1_Gemcitabine_Cytarabine


title: rep2_Gemcitabine_Blebbistatin

description: rep2_Gemcitabine_BlebbistatinReadsPerGene


title: s.NJA01201.H10


title: s.NJA01201.H12


title: s.NJA01201.H09


title: rep1_Gemcitabine_Blebbistatin

description: rep1_Gemcitabine_BlebbistatinReadsPerGene


title: rep3_Gemcitabine_AT9283


title: s.NJA01201.H07


title: rep2_Gemcitabine_AT9283


title: s.NJA01201.H04


title: s.NJA01201.H03


title: rep1_Gemcitabine_AT9283


title: rep2_Fludarabine_YM155

value: Fludarabine


title: rep3_Fludarabine_YM155


title: s.NJA01201.H01


title: rep1_Fludarabine_YM155


title: rep2_Fludarabine_Trametinib

value: Trametinib


title: rep2_Fludarabine_Tabloid

value: Tabloid


title: rep3_Fludarabine_Trametinib


title: rep3_Fludarabine_Tabloid


title: m.NJA01201.G23


title: m.NJA01201.G22


title: m.NJA01201.G21


title: m.NJA01201.G19


title: rep1_Fludarabine_Trametinib


title: rep3_Fludarabine_Streptozotocin

description: rep3_Fludarabine_StreptozotocinReadsPerGene

value: Streptozotocin


title: m.NJA01201.G20


title: s.NJA01201.G17


title: s.NJA01201.G18


title: s.NJA01201.G15


title: rep1_Fludarabine_Streptozotocin

description: rep1_Fludarabine_StreptozotocinReadsPerGene


title: s.NJA01201.G14


title: rep3_Fludarabine_Sonolisib

value: Sonolisib


title: s.NJA01201.H05


title: m.NJA01201.G24


title: s.NJA01201.G11


title: rep1_Fludarabine_Sonolisib

value: Myelogenous leukemia cells


title: s.NJA01201.G09


title: rep3_Fludarabine_SF1126


title: rep2_Fludarabine_Sonolisib


title: rep1_Fludarabine_Tabloid


title: s.NJA01201.G10


title: s.NJA01201.G06


title: rep2_Fludarabine_Streptozotocin

description: rep2_Fludarabine_StreptozotocinReadsPerGene


title: rep1_Fludarabine_Olomucin

value: Olomucin


title: rep2_Fludarabine_SF1126


title: s.NJA01201.G01


title: rep2_Fludarabine_Olomucin


title: rep1_Fludarabine_SF1126


title: m.NJA01201.F24


title: s.NJA01201.G03


title: s.NJA01201.G04


title: s.NJA01201.G02


title: rep2_Fludarabine_NMS1286937


title: m.NJA01201.F23


title: rep3_Fludarabine_Olomucin


title: rep1_Fludarabine_NMS1286937


title: m.NJA01201.F22


title: rep3_Fludarabine_NMS1286937


title: rep3_Fludarabine_Mitomycin

value: Mitomycin


title: m.NJA01201.F21


title: m.NJA01201.F19


title: rep2_Fludarabine_Mitomycin

value: bcr:abl fusion gene


title: rep1_Fludarabine_Mitomycin


title: s.NJA01201.F18


title: rep1_Fludarabine_Methotrexate

description: rep1_Fludarabine_MethotrexateReadsPerGene

value: Methotrexate


title: s.NJA01201.F17

value: Singlet


title: rep2_Fludarabine_Methotrexate

description: rep2_Fludarabine_MethotrexateReadsPerGene


title: rep3_Fludarabine_Methotrexate

description: rep3_Fludarabine_MethotrexateReadsPerGene


title: rep3_Fludarabine_Imatininb

value: Imatininb


title: s.NJA01201.F15


title: s.NJA01201.F08


title: s.NJA01201.F10


title: rep1_Fludarabine_Imatininb


title: s.NJA01201.F14


title: s.NJA01201.F12


title: s.NJA01201.F04


title: rep2_Fludarabine_Hematoxylin

description: rep2_Fludarabine_HematoxylinReadsPerGene

value: Hematoxylin


title: rep2_Fludarabine_Imatininb


title: s.NJA01201.F11


title: rep2_Fludarabine_Hymenialdisine

description: rep2_Fludarabine_HymenialdisineReadsPerGene

value: Hymenialdisine


title: rep3_Fludarabine_Hematoxylin

description: rep3_Fludarabine_HematoxylinReadsPerGene


title: s.NJA01201.F07


title: s.NJA01201.F06


title: rep3_Fludarabine_Hymenialdisine

description: rep3_Fludarabine_HymenialdisineReadsPerGene


title: rep1_Fludarabine_Hematoxylin

description: rep1_Fludarabine_HematoxylinReadsPerGene


title: m.NJA01201.F20

value: Multiplet


title: s.NJA01201.F03


title: rep2_Fludarabine_Fluoruracil

description: rep2_Fludarabine_FluoruracilReadsPerGene

value: Fluoruracil


title: s.NJA01201.F02


title: rep3_Fludarabine_Fluoruracil

description: rep3_Fludarabine_FluoruracilReadsPerGene


title: rep1_Fludarabine_Fluoruracil

description: rep1_Fludarabine_FluoruracilReadsPerGene


title: s.NJA01201.F01


title: m.NJA01201.E24


title: s.NJA01201.F16


title: m.NJA01201.E23


title: rep1_Fludarabine_EPIRUBICIN

value: EPIRUBICIN


title: rep3_Fludarabine_EPIRUBICIN

value: Fludarabine


title: rep1_Fludarabine_Hymenialdisine

description: rep1_Fludarabine_HymenialdisineReadsPerGene


title: m.NJA01201.E22


title: m.NJA01201.E21


title: rep3_Fludarabine_DMSO

value: DMSO


title: m.NJA01201.E19


title: s.NJA01201.E18


title: rep2_Fludarabine_DMSO


title: rep2_Fludarabine_Decitabine

value: Decitabine


title: s.NJA01201.E17


title: s.NJA01201.E16


title: rep1_Fludarabine_Decitabine


title: rep3_Fludarabine_Decitabine


title: rep2_Fludarabine_Dacarbazine

description: rep2_Fludarabine_DacarbazineReadsPerGene

value: Dacarbazine


title: s.NJA01201.E15


title: s.NJA01201.E13


title: s.NJA01201.E14


title: s.NJA01201.E12


title: rep3_Fludarabine_Dacarbazine

description: rep3_Fludarabine_DacarbazineReadsPerGene


title: s.NJA01201.E11


title: rep3_Fludarabine_Cytarabine

value: Cytarabine


title: rep2_Fludarabine_EPIRUBICIN

value: Myelogenous leukemia cells


title: rep1_Fludarabine_Dacarbazine

description: rep1_Fludarabine_DacarbazineReadsPerGene


title: rep2_Fludarabine_Cytarabine


title: s.NJA01201.E10


title: s.NJA01201.E09


title: s.NJA01201.E07


title: rep1_Fludarabine_Cytarabine


title: s.NJA01201.E06


title: rep1_Fludarabine_DMSO


title: rep2_Fludarabine_Blebbistatin

description: rep2_Fludarabine_BlebbistatinReadsPerGene

value: Blebbistatin


title: rep1_Fludarabine_Blebbistatin

description: rep1_Fludarabine_BlebbistatinReadsPerGene


title: rep3_Fludarabine_AT9283


title: rep2_Fludarabine_AT9283


title: s.NJA01201.E05


title: s.NJA01201.E04


title: s.NJA01201.E03


title: rep1_Fludarabine_AT9283


title: rep3_Doxorubicin_YM155

value: Doxorubicin


title: s.NJA01201.E02


title: m.NJA01201.D24


title: m.NJA01201.D22


title: rep2_Doxorubicin_YM155

value: bcr:abl fusion gene


title: m.NJA01201.D23


title: rep1_Doxorubicin_YM155


title: rep3_Doxorubicin_Trametinib

value: Trametinib


title: rep2_Doxorubicin_Trametinib


title: s.NJA01201.D18

value: Singlet


title: rep1_Doxorubicin_Trametinib


title: rep3_Fludarabine_Blebbistatin

description: rep3_Fludarabine_BlebbistatinReadsPerGene


title: m.NJA01201.D20


title: rep2_Doxorubicin_Tabloid

value: Tabloid


title: s.NJA01201.D13


title: s.NJA01201.D16


title: s.NJA01201.D14


title: rep3_Doxorubicin_Streptozotocin

description: rep3_Doxorubicin_StreptozotocinReadsPerGene

value: Streptozotocin


title: m.NJA01201.D19


title: s.NJA01201.D12


title: s.NJA01201.D08


title: rep1_Doxorubicin_Tabloid


title: s.NJA01201.E08


title: rep1_Doxorubicin_Streptozotocin

description: rep1_Doxorubicin_StreptozotocinReadsPerGene


title: rep3_Doxorubicin_Sonolisib

value: Sonolisib


title: s.NJA01201.D06


title: rep2_Doxorubicin_Sonolisib


title: s.NJA01201.D05


title: rep1_Doxorubicin_Sonolisib


title: rep3_Doxorubicin_SF1126


title: rep3_Doxorubicin_Tabloid


title: s.NJA01201.D02


title: s.NJA01201.D01


title: m.NJA01201.C24

value: Multiplet


title: m.NJA01201.C22


title: rep3_Doxorubicin_Olomucin

value: Olomucin


title: rep1_Doxorubicin_SF1126


title: rep1_Doxorubicin_Olomucin


title: rep2_Doxorubicin_Olomucin


title: rep2_Doxorubicin_Streptozotocin

description: rep2_Doxorubicin_StreptozotocinReadsPerGene


title: m.NJA01201.C20


title: rep3_Doxorubicin_NMS1286937


title: m.NJA01201.C19


title: rep2_Doxorubicin_NMS1286937


title: s.NJA01201.C17


title: s.NJA01201.C16


title: s.NJA01201.D04


title: rep3_Doxorubicin_Mitomycin

value: Mitomycin


title: rep1_Doxorubicin_NMS1286937


title: s.NJA01201.D03


title: rep2_Doxorubicin_SF1126


title: s.NJA01201.C15


title: rep1_Doxorubicin_Mitomycin


title: rep2_Doxorubicin_Mitomycin


title: rep3_Doxorubicin_Methotrexate

description: rep3_Doxorubicin_MethotrexateReadsPerGene

value: Methotrexate


title: rep2_Doxorubicin_Methotrexate

description: rep2_Doxorubicin_MethotrexateReadsPerGene


title: s.NJA01201.C11


title: s.NJA01201.C12


title: rep1_Doxorubicin_Methotrexate

description: rep1_Doxorubicin_MethotrexateReadsPerGene


title: rep3_Doxorubicin_Imatininb

value: Imatininb


title: s.NJA01201.C10


title: s.NJA01201.C09


title: rep1_Doxorubicin_Imatininb


title: rep2_Doxorubicin_Imatininb


title: s.NJA01201.C18


title: s.NJA01201.C07


title: rep3_Doxorubicin_Hymenialdisine

description: rep3_Doxorubicin_HymenialdisineReadsPerGene

value: Hymenialdisine


title: s.NJA01201.C06


title: s.NJA01201.C05


title: rep2_Doxorubicin_Hymenialdisine

description: rep2_Doxorubicin_HymenialdisineReadsPerGene


title: s.NJA01201.C08


title: rep1_Doxorubicin_Hymenialdisine

description: rep1_Doxorubicin_HymenialdisineReadsPerGene


title: s.NJA01201.C04


title: s.NJA01201.C14


title: rep2_Doxorubicin_Hematoxylin

description: rep2_Doxorubicin_HematoxylinReadsPerGene

value: Hematoxylin


title: s.NJA01201.C13


title: rep3_Doxorubicin_Fluoruracil

description: rep3_Doxorubicin_FluoruracilReadsPerGene

value: Fluoruracil


title: rep2_Doxorubicin_Fluoruracil

description: rep2_Doxorubicin_FluoruracilReadsPerGene

value: Myelogenous leukemia cells


title: rep1_Doxorubicin_Hematoxylin

description: rep1_Doxorubicin_HematoxylinReadsPerGene


title: s.NJA01201.C03


title: s.NJA01201.C01


title: m.NJA01201.B22


title: m.NJA01201.B24


title: m.NJA01201.B20


title: rep3_Doxorubicin_EPIRUBICIN

value: EPIRUBICIN


title: m.NJA01201.B19


title: rep2_Doxorubicin_EPIRUBICIN

value: Doxorubicin


title: rep1_Doxorubicin_EPIRUBICIN

value: bcr:abl fusion gene


title: rep3_Doxorubicin_DMSO

value: DMSO


title: s.NJA01201.B16

value: Singlet


title: s.NJA01201.B17


title: rep2_Doxorubicin_DMSO


title: s.NJA01201.B12


title: rep1_Doxorubicin_DMSO


title: rep3_Doxorubicin_Hematoxylin

description: rep3_Doxorubicin_HematoxylinReadsPerGene


title: rep3_Doxorubicin_Decitabine

value: Decitabine


title: s.NJA01201.B15


title: s.NJA01201.B07


title: rep1_Doxorubicin_Fluoruracil

description: rep1_Doxorubicin_FluoruracilReadsPerGene


title: rep1_Doxorubicin_Decitabine


title: rep2_Doxorubicin_Dacarbazine

description: rep2_Doxorubicin_DacarbazineReadsPerGene

value: Dacarbazine


title: m.NJA01201.B21


title: s.NJA01201.B04


title: rep1_Doxorubicin_Dacarbazine

description: rep1_Doxorubicin_DacarbazineReadsPerGene


title: s.NJA01201.B18


title: s.NJA01201.B02


title: rep3_Doxorubicin_Cytarabine

value: Cytarabine


title: s.NJA01201.B03


title: s.NJA01201.B06


title: s.NJA01201.B14


title: rep1_Doxorubicin_Cytarabine


title: s.NJA01201.B08


title: rep3_Doxorubicin_Blebbistatin

description: rep3_Doxorubicin_BlebbistatinReadsPerGene

value: Blebbistatin


title: rep1_Doxorubicin_Blebbistatin

description: rep1_Doxorubicin_BlebbistatinReadsPerGene


title: m.NJA01201.A24

value: Multiplet


title: m.NJA01201.A22


title: m.NJA01201.A23


title: s.NJA01201.B01


title: m.NJA01201.A20


title: m.NJA01201.A21


title: m.NJA01201.A19


title: rep1_Doxorubicin_AT9283


title: rep2_Doxorubicin_Decitabine


title: s.NJA01201.A18


title: rep2_Dovitinib_YM155

value: Dovitinib


title: s.NJA01201.A16


title: rep3_Doxorubicin_Dacarbazine

description: rep3_Doxorubicin_DacarbazineReadsPerGene


title: rep1_Dovitinib_YM155


title: rep3_Doxorubicin_AT9283


title: s.NJA01201.A14


title: rep3_Dovitinib_Trametinib

value: Trametinib


title: s.NJA01201.A13


title: s.NJA01201.A15


title: rep2_Dovitinib_Trametinib


title: s.NJA01201.A12


title: rep3_Dovitinib_Tabloid

value: Tabloid


title: s.NJA01201.A11


title: rep1_Dovitinib_Trametinib


title: s.NJA01201.A10


title: rep2_Doxorubicin_AT9283


title: rep1_Dovitinib_Tabloid


title: s.NJA01201.A09


title: rep2_Dovitinib_Tabloid


title: rep3_Dovitinib_Streptozotocin

description: rep3_Dovitinib_StreptozotocinReadsPerGene

value: Streptozotocin


title: s.NJA01201.A06


title: s.NJA01201.A05


title: s.NJA01201.A02


title: rep1_Dovitinib_Streptozotocin

description: rep1_Dovitinib_StreptozotocinReadsPerGene


title: s.NJA01201.A01


title: rep2_Dovitinib_Sonolisib

value: Sonolisib


title: rep1_Dovitinib_Sonolisib


title: rep3_Dovitinib_SF1126


title: rep1_Dovitinib_SF1126


title: s.NJA01504.P12

value: colon


title: s.NJA01504.P13


title: rep3_Dovitinib_Sonolisib

value: Myelogenous leukemia cells


title: s.NJA01504.P14


title: s.NJA01504.P11


title: rep2_Dovitinib_Olomucin

value: Olomucin


title: s.NJA01504.P09


title: rep3_Dovitinib_Olomucin


title: s.NJA01201.A08


title: rep2_Doxorubicin_Blebbistatin

description: rep2_Doxorubicin_BlebbistatinReadsPerGene

value: Doxorubicin


title: rep2_Dovitinib_Streptozotocin

description: rep2_Dovitinib_StreptozotocinReadsPerGene

value: bcr:abl fusion gene


title: rep3_Dovitinib_NMS1286937


title: rep2_Dovitinib_NMS1286937


title: s.NJA01504.P10


title: s.NJA01504.P08


title: s.NJA01504.P05


title: rep1_Dovitinib_NMS1286937


title: rep2_Dovitinib_SF1126


title: s.NJA01504.P07


title: s.NJA01504.P06


title: s.NJA01504.P04


title: s.NJA01504.P02


title: s.NJA01504.P03


title: rep3_Dovitinib_Methotrexate

value: Methotrexate


title: s.NJA01504.P01

value: Singlet


title: s.NJA01504.O13


title: rep1_Dovitinib_Mitomycin

value: Mitomycin


title: rep2_Dovitinib_Mitomycin


title: rep3_Dovitinib_Mitomycin


title: s.NJA01504.O12


title: rep1_Dovitinib_Methotrexate


title: rep3_Dovitinib_Imatininb

value: Imatininb


title: s.NJA01504.O11


title: s.NJA01504.O10


title: rep1_Dovitinib_Olomucin


title: rep2_Dovitinib_Methotrexate


title: rep2_Dovitinib_Imatininb


title: s.NJA01504.O09


title: rep3_Dovitinib_Hymenialdisine

description: rep3_Dovitinib_HymenialdisineReadsPerGene

value: Hymenialdisine


title: rep1_Dovitinib_Imatininb


title: s.NJA01504.O07


title: rep2_Dovitinib_Hymenialdisine

description: rep2_Dovitinib_HymenialdisineReadsPerGene


title: s.NJA01504.O05


title: rep1_Dovitinib_Hymenialdisine

description: rep1_Dovitinib_HymenialdisineReadsPerGene


title: rep2_Dovitinib_Hematoxylin

value: Hematoxylin


title: s.NJA01504.O06


title: rep1_Dovitinib_Hematoxylin


title: s.NJA01504.O01


title: s.NJA01504.N14


title: s.NJA01504.O04


title: rep3_Dovitinib_Fluoruracil

value: Fluoruracil


title: rep3_Dovitinib_YM155

value: Dovitinib


title: rep2_Dovitinib_Fluoruracil


title: s.NJA01504.N10


title: rep3_Dovitinib_EPIRUBICIN

value: EPIRUBICIN


title: s.NJA01504.N13


title: rep1_Dovitinib_Fluoruracil


title: s.NJA01504.N09


title: s.NJA01504.N08


title: rep2_Dovitinib_EPIRUBICIN


title: s.NJA01504.N07


title: rep3_Dovitinib_DMSO

value: DMSO


title: rep1_Dovitinib_EPIRUBICIN


title: s.NJA01504.N06


title: s.NJA01504.O08


title: s.NJA01504.N05


title: rep3_Dovitinib_Hematoxylin


title: rep2_Dovitinib_DMSO


title: rep1_Dovitinib_DMSO


title: s.NJA01504.N04


title: s.NJA01504.N03


title: rep3_Dovitinib_Decitabine

value: Decitabine


title: s.NJA01504.N01


title: rep2_Dovitinib_Decitabine


title: rep1_Dovitinib_Decitabine


title: s.NJA01504.N02


title: s.NJA01504.M14


title: s.NJA01504.N12


title: rep3_Dovitinib_Dacarbazine

value: Dacarbazine


title: rep1_Dovitinib_Dacarbazine


title: rep2_Doxorubicin_Cytarabine

value: Cytarabine


title: rep2_Dovitinib_Dacarbazine

value: Myelogenous leukemia cells


title: s.NJA01504.M11

value: colon


title: s.NJA01504.M12


title: rep3_Dovitinib_Cytarabine


title: s.NJA01504.M10


title: rep2_Dovitinib_Cytarabine


title: s.NJA01504.M08


title: rep3_Dovitinib_Blebbistatin

value: Blebbistatin


title: rep1_Dovitinib_Cytarabine

value: bcr:abl fusion gene


title: s.NJA01504.M07


title: rep2_Dovitinib_Blebbistatin


title: s.NJA01504.M06


title: rep1_Dovitinib_Blebbistatin


title: rep3_Dovitinib_AT9283


title: s.NJA01504.M05


title: s.NJA01504.M04


title: rep2_Dovitinib_AT9283


title: s.NJA01504.M03


title: rep1_Dovitinib_AT9283


title: s.NJA01504.M02


title: rep3_DMSO_YM155


title: s.NJA01504.L14


title: rep2_DMSO_YM155


title: rep3_DMSO_Trametinib

value: Trametinib


title: rep1_DMSO_YM155


title: s.NJA01504.L11

value: Singlet


title: s.NJA01504.L13


title: s.NJA01504.M01


title: rep3_DMSO_Tabloid

value: Tabloid


title: rep1_DMSO_Trametinib


title: s.NJA01504.M09


title: s.NJA01504.L08


title: rep2_DMSO_Trametinib


title: s.NJA01504.L06


title: s.NJA01504.L05


title: s.NJA01504.L07


title: rep3_DMSO_Streptozotocin

value: Streptozotocin


title: s.NJA01504.L04


title: rep1_DMSO_Tabloid


title: rep2_DMSO_Streptozotocin


title: s.NJA01504.L03


title: rep1_DMSO_Streptozotocin


title: s.NJA01504.L01


title: rep3_DMSO_Sonolisib

value: Sonolisib


title: s.NJA01504.K14


title: rep1_DMSO_Sonolisib


title: s.NJA01504.K13


title: s.NJA01504.K11


title: rep2_DMSO_SF1126


title: rep3_DMSO_SF1126


title: s.NJA01504.L09


title: s.NJA01504.K10


title: s.NJA01504.K08


title: rep3_DMSO_Olomucin

value: Olomucin


title: rep2_DMSO_Tabloid


title: rep1_DMSO_SF1126


title: s.NJA01504.K12


title: s.NJA01504.K06


title: rep1_DMSO_Olomucin


title: rep2_DMSO_Olomucin


title: s.NJA01504.K09


title: rep3_DMSO_NMS1286937


title: rep1_DMSO_NMS1286937


title: s.NJA01504.K02


title: s.NJA01504.K07


title: rep3_DMSO_Mitomycin

value: Mitomycin


title: s.NJA01504.K05


title: s.NJA01504.K04


title: rep2_DMSO_Mitomycin


title: rep2_DMSO_NMS1286937


title: s.NJA01504.J14


title: s.NJA01504.K03


title: rep1_DMSO_Mitomycin


title: s.NJA01504.K01


title: rep2_DMSO_Sonolisib


title: s.NJA01504.J12


title: s.NJA01504.J11


title: rep2_DMSO_Methotrexate

value: Methotrexate


title: rep1_DMSO_Methotrexate


title: rep3_DMSO_Methotrexate


title: s.NJA01504.J08


title: s.NJA01504.J07


title: s.NJA01504.J10


title: s.NJA01504.J13


title: rep1_DMSO_Imatininb

value: Imatininb


title: rep2_DMSO_Hymenialdisine

value: DMSO

value: Hymenialdisine


title: s.NJA01504.J06


title: s.NJA01504.J05


title: rep3_DMSO_Hymenialdisine


title: rep1_DMSO_Hymenialdisine


title: s.NJA01504.J04


title: s.NJA01504.J02


title: s.NJA01504.J01


title: rep3_DMSO_Hematoxylin

value: Hematoxylin


title: rep2_DMSO_Hematoxylin


title: rep1_DMSO_Hematoxylin


title: rep2_DMSO_Fluoruracil

value: Fluoruracil


title: rep3_DMSO_Imatininb

value: Myelogenous leukemia cells


title: rep1_DMSO_Fluoruracil


title: s.NJA01504.I12

value: colon


title: s.NJA01504.I13


title: s.NJA01504.J03


title: rep3_DMSO_Fluoruracil


title: s.NJA01504.I10


title: rep1_DMSO_EPIRUBICIN

value: EPIRUBICIN


title: rep2_DMSO_Imatininb

value: bcr:abl fusion gene


title: rep2_DMSO_EPIRUBICIN


title: s.NJA01504.I11


title: s.NJA01504.I09


title: s.NJA01504.I07


title: s.NJA01504.I06


title: s.NJA01504.I14


title: rep2_DMSO_DMSO


title: rep1_DMSO_DMSO_ctrl


title: rep3_DMSO_DMSO


title: rep3_DMSO_EPIRUBICIN


title: rep1_DMSO_DMSO


title: s.NJA01504.I03


title: s.NJA01504.I02


title: rep3_DMSO_Decitabine

value: Decitabine


title: s.NJA01504.I01

value: Singlet


title: s.NJA01504.H13


title: rep2_DMSO_Decitabine


title: rep1_DMSO_Decitabine


title: s.NJA01504.I08


title: rep2_DMSO_Dacarbazine

value: Dacarbazine


title: rep1_DMSO_Dacarbazine


title: rep3_DMSO_DMSO_ctrl


title: s.NJA01504.H09


title: s.NJA01504.H08


title: rep3_DMSO_Cytarabine

value: Cytarabine


title: s.NJA01504.H05


title: rep2_DMSO_Blebbistatin

value: Blebbistatin


title: rep1_DMSO_Blebbistatin


title: s.NJA01504.H03


title: s.NJA01504.H02


title: s.NJA01504.H01


title: rep2_DMSO_DMSO_ctrl


title: rep3_DMSO_AT9283


title: rep2_DMSO_Cytarabine


title: rep1_DMSO_Cytarabine


title: s.NJA01504.H10


title: rep3_Clofarabine_YM155

value: Clofarabine


title: rep2_DMSO_AT9283


title: rep1_DMSO_AT9283


title: rep3_DMSO_Blebbistatin


title: s.NJA01504.G11


title: s.NJA01504.G12


title: rep2_Clofarabine_YM155


title: s.NJA01504.H06


title: s.NJA01504.H07


title: rep1_Clofarabine_YM155


title: s.NJA01504.G14


title: s.NJA01504.G08


title: s.NJA01504.G04


title: s.NJA01504.G07


title: rep3_Clofarabine_Trametinib

value: Trametinib


title: rep1_Clofarabine_Trametinib


title: s.NJA01504.G09


title: rep2_Clofarabine_Trametinib


title: s.NJA01504.G06


title: s.NJA01504.G03


title: rep2_Clofarabine_Tabloid

value: Tabloid


title: s.NJA01504.G02


title: rep1_Clofarabine_Tabloid


title: s.NJA01504.F14


title: rep2_Clofarabine_Streptozotocin

description: rep2_Clofarabine_StreptozotocinReadsPerGene

value: Streptozotocin


title: rep3_Clofarabine_Streptozotocin

description: rep3_Clofarabine_StreptozotocinReadsPerGene


title: s.NJA01504.F12


title: rep3_Clofarabine_Sonolisib

value: Sonolisib


title: rep1_Clofarabine_Streptozotocin

description: rep1_Clofarabine_StreptozotocinReadsPerGene


title: s.NJA01504.F11


title: s.NJA01504.F10


title: rep3_DMSO_Dacarbazine

value: DMSO


title: rep3_Clofarabine_SF1126


title: s.NJA01504.H12


title: rep1_Clofarabine_Sonolisib


title: rep3_Clofarabine_Tabloid


title: rep2_Clofarabine_Sonolisib


title: s.NJA01504.F07


title: s.NJA01504.F08


title: s.NJA01504.H11


title: rep2_Clofarabine_SF1126


title: rep1_Clofarabine_SF1126


title: s.NJA01504.F06


title: s.NJA01504.I05


title: rep3_Clofarabine_Olomucin

value: Olomucin


title: s.NJA01504.F05


title: s.NJA01504.F04


title: rep2_Clofarabine_Olomucin


title: s.NJA01504.F13


title: rep1_Clofarabine_Olomucin


title: s.NJA01504.G01


title: rep3_Clofarabine_NMS1286937


title: s.NJA01504.F03


title: rep2_Clofarabine_NMS1286937


title: s.NJA01504.F02


title: s.NJA01504.F01


title: rep3_Clofarabine_Mitomycin

value: Mitomycin


title: s.NJA01504.F09


title: s.NJA01504.E13


title: rep1_Clofarabine_NMS1286937

value: Myelogenous leukemia cells


title: s.NJA01504.E09

value: colon


title: s.NJA01504.E08


title: s.NJA01504.E11


title: rep2_Clofarabine_Mitomycin


title: rep3_Clofarabine_Methotrexate

description: rep3_Clofarabine_MethotrexateReadsPerGene

value: Methotrexate


title: rep2_Clofarabine_Methotrexate

description: rep2_Clofarabine_MethotrexateReadsPerGene

value: bcr:abl fusion gene


title: s.NJA01504.E07


title: rep1_Clofarabine_Mitomycin


title: rep1_Clofarabine_Methotrexate

description: rep1_Clofarabine_MethotrexateReadsPerGene


title: rep3_Clofarabine_Imatininb

value: Imatininb


title: s.NJA01504.E06

value: Singlet


title: s.NJA01504.E05


title: s.NJA01504.E04


title: rep2_Clofarabine_Imatininb


title: rep1_Clofarabine_Imatininb


title: s.NJA01504.E01


title: s.NJA01504.D13


title: rep3_Clofarabine_Hymenialdisine

description: rep3_Clofarabine_HymenialdisineReadsPerGene

value: Hymenialdisine


title: s.NJA01504.D11


title: s.NJA01504.D12


title: rep2_Clofarabine_Hymenialdisine

description: rep2_Clofarabine_HymenialdisineReadsPerGene


title: s.NJA01504.D09


title: s.NJA01504.D10


title: rep1_Clofarabine_Hymenialdisine

description: rep1_Clofarabine_HymenialdisineReadsPerGene


title: rep2_Clofarabine_Hematoxylin

description: rep2_Clofarabine_HematoxylinReadsPerGene

value: Hematoxylin


title: rep1_Clofarabine_Hematoxylin

description: rep1_Clofarabine_HematoxylinReadsPerGene


title: s.NJA01504.D07


title: s.NJA01504.D08


title: rep2_Clofarabine_Fluoruracil

description: rep2_Clofarabine_FluoruracilReadsPerGene

value: Fluoruracil


title: s.NJA01504.D05


title: rep1_Clofarabine_Fluoruracil

description: rep1_Clofarabine_FluoruracilReadsPerGene

value: Clofarabine


title: s.NJA01504.D04


title: rep3_Clofarabine_EPIRUBICIN

value: EPIRUBICIN


title: rep1_Clofarabine_EPIRUBICIN


title: rep2_Clofarabine_EPIRUBICIN


title: rep3_Clofarabine_DMSO


title: s.NJA01504.C13


title: s.NJA01504.D01


title: rep2_Clofarabine_DMSO


title: s.NJA01504.C12


title: rep1_Clofarabine_DMSO


title: s.NJA01504.C11


title: rep3_Clofarabine_Decitabine

value: Decitabine


title: rep3_Clofarabine_Hematoxylin

description: rep3_Clofarabine_HematoxylinReadsPerGene


title: rep2_Clofarabine_Decitabine


title: rep3_Clofarabine_Dacarbazine

description: rep3_Clofarabine_DacarbazineReadsPerGene

value: Dacarbazine


title: s.NJA01504.C08


title: rep3_Clofarabine_Fluoruracil

description: rep3_Clofarabine_FluoruracilReadsPerGene


title: s.NJA01504.D06


title: rep2_Clofarabine_Dacarbazine

description: rep2_Clofarabine_DacarbazineReadsPerGene


title: rep1_Clofarabine_Dacarbazine

description: rep1_Clofarabine_DacarbazineReadsPerGene


title: s.NJA01504.C04


title: rep1_Clofarabine_Decitabine


title: s.NJA01504.C10


title: s.NJA01504.C03


title: s.NJA01504.B13


title: rep3_Clofarabine_Cytarabine

value: Cytarabine


title: s.NJA01504.C02


title: s.NJA01504.D03


title: rep2_Clofarabine_Cytarabine


title: s.NJA01504.D02


title: s.NJA01504.B12


title: s.NJA01504.C07


title: rep1_Clofarabine_Cytarabine


title: s.NJA01504.B11


title: rep2_Clofarabine_Blebbistatin

description: rep2_Clofarabine_BlebbistatinReadsPerGene

value: Blebbistatin


title: s.NJA01504.B10


title: s.NJA01504.B09


title: rep3_Clofarabine_Blebbistatin

description: rep3_Clofarabine_BlebbistatinReadsPerGene


title: s.NJA01504.C09


title: rep2_Clofarabine_AT9283


title: rep1_Clofarabine_Blebbistatin

description: rep1_Clofarabine_BlebbistatinReadsPerGene


title: rep3_Clofarabine_AT9283


title: rep1_Clofarabine_AT9283


title: s.NJA01504.B07


title: s.NJA01504.B06


title: rep3_Baricitinib_YM155

value: Baricitinib


title: s.NJA01504.B05


title: rep2_Baricitinib_YM155


title: s.NJA01504.B04


title: rep1_Baricitinib_YM155


title: s.NJA01504.A13


title: s.NJA01504.A12


title: rep1_Baricitinib_Trametinib

value: Trametinib


title: rep2_Baricitinib_Trametinib

value: Myelogenous leukemia cells


title: rep3_Baricitinib_Tabloid

value: Tabloid


title: rep3_Baricitinib_Trametinib


title: s.NJA01504.A10

value: colon


title: s.NJA01504.A09


title: rep1_Baricitinib_Tabloid

value: bcr:abl fusion gene


title: s.NJA01504.A08


title: s.NJA01504.A07


title: s.NJA01504.B08


title: s.NJA01504.A06


title: rep2_Baricitinib_Streptozotocin

description: rep2_Baricitinib_StreptozotocinReadsPerGene

value: Streptozotocin


title: rep3_Baricitinib_Sonolisib

value: Sonolisib


title: rep1_Baricitinib_Streptozotocin

description: rep1_Baricitinib_StreptozotocinReadsPerGene


title: s.NJA01504.A05

value: Singlet


title: s.NJA01504.A02


title: s.NJA01504.A04


title: rep2_Baricitinib_Sonolisib


title: rep1_Baricitinib_Sonolisib


title: s.NJA01504.A01


title: s.NJA01801.P24


title: rep2_Baricitinib_SF1126


title: s.NJA01801.P22


title: rep3_Baricitinib_SF1126


title: s.NJA01801.P21


title: rep1_Baricitinib_SF1126


title: s.NJA01801.P20


title: rep2_Baricitinib_Tabloid


title: rep1_Baricitinib_Olomucin

value: Olomucin


title: rep3_Baricitinib_Streptozotocin

description: rep3_Baricitinib_StreptozotocinReadsPerGene


title: s.NJA01801.P18


title: s.NJA01504.B02


title: s.NJA01801.P17


title: rep2_Baricitinib_Olomucin


title: s.NJA01801.P19


title: rep3_Baricitinib_Mitomycin

value: Mitomycin


title: rep1_Baricitinib_NMS1286937


title: s.NJA01801.P13


title: s.NJA01801.P12


title: rep3_Baricitinib_NMS1286937


title: s.NJA01801.P14


title: rep3_Baricitinib_Olomucin


title: rep1_Baricitinib_Mitomycin


title: s.NJA01801.P15


title: s.NJA01801.P16


title: s.NJA01801.P11


title: rep3_Baricitinib_Methotrexate

description: rep3_Baricitinib_MethotrexateReadsPerGene

value: Methotrexate


title: rep2_Baricitinib_Methotrexate

description: rep2_Baricitinib_MethotrexateReadsPerGene


title: rep2_Baricitinib_NMS1286937


title: s.NJA01801.P10


title: rep2_Baricitinib_Mitomycin


title: rep1_Baricitinib_Methotrexate

description: rep1_Baricitinib_MethotrexateReadsPerGene


title: s.NJA01801.P08


title: rep3_Baricitinib_Imatininb

value: Imatininb


title: rep2_Baricitinib_Imatininb


title: s.NJA01801.P06


title: s.NJA01801.P05


title: rep1_Baricitinib_Imatininb


title: s.NJA01801.P07


title: rep3_Baricitinib_Hymenialdisine

description: rep3_Baricitinib_HymenialdisineReadsPerGene

value: Hymenialdisine


title: rep2_Baricitinib_Hymenialdisine

description: rep2_Baricitinib_HymenialdisineReadsPerGene


title: s.NJA01801.P04


title: s.NJA01801.P03


title: s.NJA01801.P02


title: rep3_Baricitinib_Hematoxylin

description: rep3_Baricitinib_HematoxylinReadsPerGene

value: Hematoxylin


title: s.NJA01801.O24


title: rep1_Baricitinib_Hymenialdisine

description: rep1_Baricitinib_HymenialdisineReadsPerGene


title: rep2_Baricitinib_Hematoxylin

description: rep2_Baricitinib_HematoxylinReadsPerGene


title: s.NJA01801.O22


title: s.NJA01801.P09


title: s.NJA01801.O19


title: rep2_Baricitinib_Fluoruracil

description: rep2_Baricitinib_FluoruracilReadsPerGene

value: Fluoruracil


title: rep3_Baricitinib_Fluoruracil

description: rep3_Baricitinib_FluoruracilReadsPerGene


title: s.NJA01801.O21


title: rep3_Baricitinib_EPIRUBICIN

value: EPIRUBICIN


title: rep2_Baricitinib_EPIRUBICIN

value: Baricitinib


title: s.NJA01801.O18


title: rep1_Baricitinib_Hematoxylin

description: rep1_Baricitinib_HematoxylinReadsPerGene


title: rep1_Baricitinib_EPIRUBICIN


title: s.NJA01801.O17


title: s.NJA01801.O14


title: s.NJA01801.O15


title: s.NJA01801.O16


title: s.NJA01801.O13


title: rep2_Baricitinib_DMSO

value: DMSO


title: s.NJA01801.O11


title: rep1_Baricitinib_DMSO

value: Myelogenous leukemia cells


title: s.NJA01801.O10


title: rep3_Baricitinib_Decitabine

value: Decitabine


title: s.NJA01801.O12

value: colon


title: rep2_Baricitinib_Decitabine

value: bcr:abl fusion gene


title: s.NJA01801.O09


title: s.NJA01801.O08


title: rep1_Baricitinib_Decitabine


title: rep3_Baricitinib_Dacarbazine

description: rep3_Baricitinib_DacarbazineReadsPerGene

value: Dacarbazine


title: rep1_Baricitinib_Fluoruracil

description: rep1_Baricitinib_FluoruracilReadsPerGene


title: s.NJA01801.O07


title: rep2_Baricitinib_Dacarbazine

description: rep2_Baricitinib_DacarbazineReadsPerGene


title: s.NJA01801.O06


title: rep1_Baricitinib_Dacarbazine

description: rep1_Baricitinib_DacarbazineReadsPerGene


title: s.NJA01801.O04


title: s.NJA01801.O03


title: s.NJA01801.O05


title: rep3_Baricitinib_Cytarabine

value: Cytarabine


title: rep2_Baricitinib_Cytarabine


title: rep3_Baricitinib_DMSO


title: s.NJA01801.N24

value: Singlet


title: s.NJA01801.O02


title: rep1_Baricitinib_Blebbistatin

description: rep1_Baricitinib_BlebbistatinReadsPerGene

value: Blebbistatin


title: rep2_Baricitinib_Blebbistatin

description: rep2_Baricitinib_BlebbistatinReadsPerGene


title: s.NJA01801.N22


title: rep3_Baricitinib_Blebbistatin

description: rep3_Baricitinib_BlebbistatinReadsPerGene


title: s.NJA01801.N21


title: rep2_Baricitinib_AT9283


title: s.NJA01801.N20


title: s.NJA01801.N19


title: s.NJA01801.N18


title: rep1_Baricitinib_AT9283


title: rep3_Baricitinib_AT9283


title: Run_3_dT_YM115_YM115

tag: dt

value: dt


title: s.NJA01801.N17


title: Run_2_dT_YM115_YM115


title: s.NJA01801.N16


title: Run_1_dT_YM115_YM115


title: s.NJA01801.N15


title: Run_3_dT_YM115_Trametinib

value: Trametinib


title: rep1_Baricitinib_Cytarabine


title: s.NJA01801.N13


title: Run_1_dT_YM115_Trametinib


title: Run_2_dT_YM115_Trametinib


title: Run_3_dT_YM115_Imatinib

value: Imatinib


title: s.NJA01801.N11


title: Run_2_dT_YM115_Imatinib


title: Run_1_dT_YM115_Imatinib


title: Run_3_dT_YM115_DMSO


title: s.NJA01801.N10


title: s.NJA01801.N07


title: Run_1_dT_YM115_DMSO


title: Run_2_dT_YM115_DMSO


title: Run_3_dT_Trametinib_YM115


title: s.NJA01801.N09


title: s.NJA01801.N05


title: s.NJA01801.N04


title: Run_2_dT_Trametinib_YM115


title: Run_1_dT_Trametinib_YM115


title: Run_2_dT_Trametinib_Trametinib

description: Run_2_dT_Trametinib_TrametinibReadsPerGene


title: s.NJA01801.N03


title: s.NJA01801.N01


title: s.NJA01801.N14


title: Run_3_dT_Trametinib_Trametinib

description: Run_3_dT_Trametinib_TrametinibReadsPerGene


title: s.NJA01801.M24


title: Run_1_dT_Trametinib_Trametinib

description: Run_1_dT_Trametinib_TrametinibReadsPerGene


title: Run_3_dT_Trametinib_Imatinib

description: Run_3_dT_Trametinib_ImatinibReadsPerGene


title: s.NJA01801.N12


title: s.NJA01801.M22


title: s.NJA01801.M21


title: s.NJA01801.N08


title: Run_3_dT_Trametinib_DMSO


title: s.NJA01801.M20


title: s.NJA01801.M19


title: s.NJA01801.N06


title: Run_2_dT_Trametinib_DMSO


title: s.NJA01801.M18


title: Run_1_dT_Trametinib_DMSO


title: s.NJA01801.M16


title: s.NJA01801.M14


title: Run_1_dT_Imatinib_YM115


title: s.NJA01801.M15


title: Run_3_dT_Imatinib_Trametinib

description: Run_3_dT_Imatinib_TrametinibReadsPerGene


title: s.NJA01801.M23


title: Run_3_dT_Imatinib_YM115


title: s.NJA01801.M13


title: Run_2_dT_Imatinib_Trametinib

description: Run_2_dT_Imatinib_TrametinibReadsPerGene


title: s.NJA01801.M17


title: s.NJA01801.M12


title: s.NJA01801.M09


title: Run_2_dT_Imatinib_Imatinib


title: Run_2_dT_Trametinib_Imatinib

description: Run_2_dT_Trametinib_ImatinibReadsPerGene


title: Run_1_dT_Trametinib_Imatinib

description: Run_1_dT_Trametinib_ImatinibReadsPerGene


title: Run_1_dT_Imatinib_Trametinib

description: Run_1_dT_Imatinib_TrametinibReadsPerGene


title: Run_2_dT_Imatinib_YM115


title: s.NJA01801.M07


title: Run_2_dT_Imatinib_DMSO


title: Run_3_dT_Imatinib_DMSO


title: s.NJA01801.M06


title: s.NJA01801.M03


title: Run_1_dT_Imatinib_Imatinib


title: Run_1_dT_Imatinib_DMSO


title: s.NJA01801.M02


title: Run_3_dT_DMSO_YM115


title: Run_1_dT_DMSO_YM115


title: s.NJA01801.L22


title: s.NJA01801.L21


title: s.NJA01801.L24


title: Run_2_dT_DMSO_Trametinib


title: s.NJA01801.L20


title: Run_3_dT_Imatinib_Imatinib


title: s.NJA01801.M11


title: Run_2_dT_DMSO_YM115


title: Run_3_dT_DMSO_Trametinib


title: Run_2_dT_DMSO_Imatinib


title: Run_3_dT_DMSO_Imatinib


title: s.NJA01801.L18


title: s.NJA01801.L16


title: s.NJA01801.L17


title: Run_1_dT_DMSO_Imatinib


title: s.NJA01801.L15


title: s.NJA01801.M05


title: s.NJA01801.L13


title: Run_2_dT_DMSO_DMSO


title: s.NJA01801.L12


title: Run_1_dT_DMSO_DMSO


title: s.NJA01801.L11


title: DMSO_3_dT


title: s.NJA01801.L10


title: s.NJA01801.L09


title: Run_3_Bio_YM115_YM115

value: bio


title: DMSO_1_dT


title: s.NJA01801.L07


title: s.NJA01801.L08


title: s.NJA01801.L19


title: Run_1_Bio_YM115_YM115


title: Run_1_dT_DMSO_Trametinib


title: s.NJA01801.L06


title: s.NJA01801.L05


title: Run_3_dT_DMSO_DMSO


title: s.NJA01801.L04


title: s.NJA01801.L03


title: s.NJA01801.L01


title: s.NJA01801.L02


title: Run_3_Bio_YM115_Imatinib


title: Run_2_Bio_YM115_Trametinib


title: Run_1_Bio_YM115_Trametinib


title: Run_2_Bio_YM115_Imatinib


title: s.NJA01801.K24


title: s.NJA01801.K23


title: DMSO_2_dT


title: Run_3_Bio_YM115_DMSO


title: Run_1_Bio_YM115_Imatinib


title: s.NJA01801.K22


title: Run_2_Bio_YM115_DMSO


title: s.NJA01801.K19


title: s.NJA01801.K20


title: Run_1_Bio_YM115_DMSO


title: Run_3_Bio_Trametinib_YM115


title: Run_2_Bio_YM115_YM115


title: s.NJA01801.K18


title: s.NJA01801.K17


title: Run_2_Bio_Trametinib_YM115


title: Run_3_Bio_YM115_Trametinib


title: s.NJA01801.K15


title: Run_1_Bio_Trametinib_YM115


title: Run_2_Bio_Trametinib_Trametinib

description: Run_2_Bio_Trametinib_TrametinibReadsPerGene


title: Run_3_Bio_Trametinib_Trametinib

description: Run_3_Bio_Trametinib_TrametinibReadsPerGene


title: s.NJA01801.K16


title: s.NJA01801.K12


title: Run_3_Bio_Trametinib_Imatinib

description: Run_3_Bio_Trametinib_ImatinibReadsPerGene


title: Run_1_Bio_Trametinib_Trametinib

description: Run_1_Bio_Trametinib_TrametinibReadsPerGene


title: s.NJA01801.K07


title: s.NJA01801.K13


title: s.NJA01801.K09


title: Run_1_Bio_Trametinib_Imatinib

description: Run_1_Bio_Trametinib_ImatinibReadsPerGene


title: s.NJA01801.K08


title: Run_3_Bio_Trametinib_DMSO


title: Run_2_Bio_Trametinib_Imatinib

description: Run_2_Bio_Trametinib_ImatinibReadsPerGene


title: Run_2_Bio_Trametinib_DMSO


title: s.NJA01801.K05


title: s.NJA01801.K04


title: s.NJA01801.K03


title: Run_1_Bio_Trametinib_DMSO


title: Run_2_Bio_Imatinib_YM115


title: s.NJA01801.K02


title: Run_1_Bio_Imatinib_YM115


title: s.NJA01801.K01


title: s.NJA01801.J22


title: Run_1_Bio_Imatinib_Trametinib

description: Run_1_Bio_Imatinib_TrametinibReadsPerGene


title: Run_3_Bio_Imatinib_Imatinib


title: s.NJA01801.J20


title: Run_2_Bio_Imatinib_Imatinib


title: s.NJA01801.J16


title: Run_3_Bio_Imatinib_DMSO


title: s.NJA01801.K06


title: s.NJA01801.J17


title: s.NJA01801.J18


title: Run_2_Bio_Imatinib_DMSO


title: Run_1_Bio_Imatinib_DMSO


title: Run_1_Bio_Imatinib_Imatinib


title: s.NJA01801.J21


title: s.NJA01801.J15


title: Run_2_Bio_DMSO_YM115


title: s.NJA01801.J13


title: Run_1_Bio_DMSO_YM115


title: s.NJA01801.J14


title: Run_3_Bio_Imatinib_YM115


title: Run_3_Bio_DMSO_YM115


title: Run_3_Bio_DMSO_Trametinib


title: s.NJA01801.J24


title: Run_3_Bio_Imatinib_Trametinib

description: Run_3_Bio_Imatinib_TrametinibReadsPerGene


title: Run_2_Bio_Imatinib_Trametinib

description: Run_2_Bio_Imatinib_TrametinibReadsPerGene


title: s.NJA01801.J11


title: s.NJA01801.J10


title: Run_2_Bio_DMSO_Trametinib


title: Run_1_Bio_DMSO_Trametinib


title: s.NJA01801.J19


title: Run_3_Bio_DMSO_Imatinib


title: s.NJA01801.J12


title: s.NJA01801.J09


title: s.NJA01801.J08


title: Run_2_Bio_DMSO_Imatinib


title: s.NJA01801.J05


title: Run_1_Bio_DMSO_Imatinib


title: s.NJA01801.J06


title: s.NJA01801.J07


title: Run_2_Bio_DMSO_DMSO


title: Run_3_Bio_DMSO_DMSO


title: s.NJA01801.J04


title: DMSO_3_BIO


title: s.NJA01801.J01


title: DMSO_2_BIO


title: DMSO_1_BIO


title: s.NJA01801.J03


title: Run_1_Bio_DMSO_DMSO


title: s.NJA01801.I24


title: s.NJA01801.J02


title: s.NJA01801.I21


title: s.NJA01801.I20


title: SC188

city: Pittsburgh

first: Tracy

last: Tabib

state: PA

address: 200 Lothrop Street

department: Department of Medicine

institute: University of Pittsburgh

data_processing:
10X Genomics' Cell Ranger 3.0.2 software's mkfastq command was used for basecalling.  It is a wrapper for Illumina's bcl2fastq
Sequenced reads were then mapped to GRCh38 whole genome using 10X Genomics' Cell Ranger 3.0.2 software's cellranger count function
Cell Ranger output files included: raw_feature_bc_matrix.h5, possorted_genome_bam.bam, and possorted_genome_bam.bam.bai files (among others).  The raw_feature_bc_matrix.h5 files were utilized for further downstream analysis in R with the package Seurat 3.0 and sctransform, only cells expressing at least 200 genes were kept for downstream analysis.
Genome_build: GRCh38
Supplementary_files_format_and_content: .h5 files contain the UMI (transcript) counts assigned to each cell barcode for each gene; each .h5 file corresponds to one sample/biopsy

molecule: polyA RNA

source_name: dorsal, mid-forearm skin biopsy

extract_protocol:
Biopsies were finely diced using a scalpel and placed in a Miltenyi C tube.  The enzymes from the Miltenyi whole skin dissociation kit, human, were used to digest cells over a period of 2 hours at 37 degrees.  Biopsies were then further mechanically separated using the h_skin_01 program on the Miltenyi OctoDissociator.  The resulting single cell suspension was filtered twice through 70 micron filters and finally resuspended in PBS containing 0.04% BSA.  Cells were loaded into the the 10X Genomics Chromium instrument according to the manufacturer's directions.
Libraries were constructed according to 10X Genomics' Single Cell 3’ Reagent Kits v1 and v2 User Guides
single cell RNA-Seq

value: skin

tag: chemistry

value: 10X Genomics 3 Prime V2 chemistry

tag: condition

value: SSC


title: SC189


title: SC119


title: s.NJA01801.I19

tag: strain


title: s.NJA01801.I17

tag: tissue


title: SC86


title: SC185


title: s.NJA01801.I16

tag: facs cellnumber


title: SC70


title: s.NJA01801.I15

tag: age (days)


title: SC69


title: s.NJA01801.I13


title: s.NJA01801.I11


title: SC60


title: SC49


title: SC34

value: 10X Genomics 3 Prime V1 chemistry

value: CONTROL


title: s.NJA01801.I09


title: SC19


title: s.NJA01801.I08


title: s.NJA01801.I07


title: s.NJA01801.I10


title: s.NJA01801.I06


title: s.NJA01801.I18


title: s.NJA01801.I03


title: SC2


title: s.NJA01801.I04


title: s.NJA01801.I02


title: s.NJA01801.I22


title: s.NJA01801.I05


title: s.NJA01801.I01


title: 6ex_Exosomes_12Gy

city: Lodz

first: Konrad

last: Stawiski

address: Mazowiecka 15

department: Department of Biostatistics and Translational Medicine

country: Poland

institute: Medical University of Lodz

data_processing:
Adapter trimming and quality filtering (at level 30) was performed using fastp (https://academic.oup.com/bioinformatics/article/34/17/i884/5093234).
UMI extraction and deduplication was performed with umi_tools (https://genome.cshlp.org/content/early/2017/01/18/gr.209601.116.abstract) using following regex expression: .+(?P<discard_1>AACTGTAGGCACCATCAAT)(?P<umi_1>.{12})(?P<discard_2>.+)
Mapping to miRbase mature (version 22) was perfomed using bowtie (https://genomebiology.biomedcentral.com/articles/10.1186/gb-2009-10-3-r25) and allowed for 1 mismatch.
Created bam files were sorted and indexed using samtools (https://www.ncbi.nlm.nih.gov/pubmed/21903627) and then picard (https://broadinstitute.github.io/picard/).
Files with counts were collected to table. Counts were converted to TPM and log10 transformed (logTPM) using edgeR without library normalization and prior equal 0.001 (hence -3 as minimum). This utlized OmicSelector (https://biostat.umed.pl/OmicSelector).
Genome_build: miRbase version 22
Supplementary_files_format_and_content: counts and logTPM values

source_name: Exosomes

extract_protocol:
Blood samples were collected at pre-specified timepoints via venipuncture. Samples were centrifuged and frozen to -80oC within 4 hours of collection. Exosomes were isolated from selected serum samples using the Qiagen miRCURY Exosome Serum/Plasma Kit. Total RNA was isolated using the Qiagen miRNeasy Serum/Plasma Kit.
After RNA extraction, small RNA-seq (next generation sequencing) indexed sequencing libraries were prepared from 200 ng total RNA according to QIAseq miRNA Library Kit Handbook (version 11/2016).

tag: body fluid

value: Serum

tag: irradiation dose


title: s.NJA01801.H21


title: 5ex_Exosomes_12Gy


title: SC5


title: s.NJA01801.H22


title: s.NJA01801.H20


title: 6ex_Exosomes_0Gy


title: 5ex_Exosomes_0Gy


title: s.NJA01801.I12


title: s.NJA01801.I14


title: s.NJA01801.H19


title: 4ex_Exosomes_12Gy


title: 4ex_Exosomes_0Gy


title: s.NJA01801.H18


title: s.NJA01801.H17


title: 3ex_Exosomes_12Gy


title: s.NJA01801.H15


title: 2ex_Exosomes_12Gy


title: 3ex_Exosomes_0Gy


title: s.NJA01801.H13


title: 2ex_Exosomes_0Gy


title: s.NJA01801.H12


title: s.NJA01801.H11


title: 1ex_Exosomes_0Gy


title: 1ex_Exosomes_12Gy


title: s.NJA01801.H10


title: 25_Serum_4Gy

source_name: Serum


title: s.NJA01801.H09


title: s.NJA01801.H08


title: s.NJA01801.H06


title: 25_Serum_0Gy


title: 23_Serum_0Gy


title: s.NJA01801.H04


title: 24_Serum_2Gy


title: 23_Serum_2Gy


title: 24_Serum_0Gy


title: s.NJA01801.H05


title: s.NJA01801.H03


title: 22_Serum_4Gy


title: s.NJA01801.H01


title: 22_Serum_0Gy


title: s.NJA01801.H02


title: 21_Serum_2Gy


title: s.NJA01801.G22


title: 21_Serum_0Gy


title: s.NJA01801.G20


title: 20_Serum_0Gy


title: s.NJA01801.H14


title: s.NJA01801.G19


title: 20_Serum_2Gy


title: 19_Serum_2Gy


title: s.NJA01801.G17


title: s.NJA01801.G18


title: 19_Serum_0Gy


title: s.NJA01801.G16


title: 18_Serum_0Gy


title: s.NJA01801.G15


title: 17_Serum_2Gy


title: s.NJA01801.G14


title: s.NJA01801.G13


title: 16_Serum_0Gy


title: s.NJA01801.G09


title: 15_Serum_2Gy


title: s.NJA01801.G11


title: 17_Serum_0Gy


title: 16_Serum_4Gy


title: s.NJA01801.G08


title: s.NJA01801.G21


title: 15_Serum_0Gy


title: s.NJA01801.G07


title: 14_Serum_0Gy


title: s.NJA01801.G06


title: s.NJA01801.G05


title: 14_Serum_2Gy


title: 13_Serum_0Gy


title: 13_Serum_4Gy


title: s.NJA01801.G03


title: 18_Serum_4Gy


title: 12_Serum_0Gy


title: s.NJA01801.G02


title: 12_Serum_2Gy


title: s.NJA01801.F21


title: 11_Serum_2Gy


title: s.NJA01801.F20


title: 10_Serum_0Gy


title: s.NJA01801.F19


title: 10_Serum_4Gy


title: 9_Serum_4Gy


title: s.NJA01801.F18


title: 9_Serum_12Gy


title: s.NJA01801.F17


title: s.NJA01801.F16


title: s.NJA01801.F22


title: 9_Serum_0Gy


title: 8_Serum_12Gy


title: s.NJA01801.F14


title: 11_Serum_0Gy


title: 8_Serum_0Gy


title: s.NJA01801.F15


title: s.NJA01801.G04


title: s.NJA01801.F13


title: s.NJA01801.F09


title: s.NJA01801.F10


title: 7_Serum_12Gy


title: 7_Serum_4Gy


title: s.NJA01801.F11


title: 7_Serum_0Gy


title: 6_Serum_12Gy


title: s.NJA01801.F07


title: 6_Serum_4Gy


title: s.NJA01801.F06


title: 6_Serum_0Gy


title: 8_Serum_4Gy


title: s.NJA01801.F05


title: 5_Serum_12Gy


title: 5_Serum_0Gy


title: s.NJA01801.F02


title: 4_Serum_12Gy


title: s.NJA01801.E22


title: 4_Serum_4Gy


title: 4_Serum_0Gy


title: s.NJA01801.F01


title: s.NJA01801.E21


title: s.NJA01801.E20


title: 3_Serum_4Gy


title: s.NJA01801.E19


title: 2_Serum_12Gy


title: s.NJA01801.E18


title: 2_Serum_4Gy


title: s.NJA01801.E16


title: s.NJA01801.F08


title: s.NJA01801.E13


title: 2_Serum_0Gy


title: s.NJA01801.F04


title: s.NJA01801.E12


title: 5_Serum_4Gy


title: s.NJA01801.F03


title: s.NJA01801.E11


title: 1_Serum_12Gy


title: 1_Serum_4Gy


title: 3_Serum_12Gy


title: s.NJA01801.E09


title: s.NJA01801.E10


title: s.NJA01801.E08