title: ATAC-seq from K562 (ENCLB416NDP)

description:
https://www.encodeproject.org/experiments/ENCSR803QIE/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR803QIE
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR199HSR
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB416NDP
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: ATCC

value: ENCBS286MFN at ENCODE; https://www.encodeproject.org/ENCBS286MFN/


title: ATAC-seq from K562 (ENCLB573VFY)

status: Public on Apr 22 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR800RAH/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR800RAH
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR068MIW
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB573VFY
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens K562 cell line treated with 1 uM Methotrexate for 24 hours, preserved by flash-freezing

tag: line

value: cell line

tag: description

value: ATAC-seq on human cell line K562

tag: biosample encode accession

tag: Sex

value: female

tag: dev stage

value: adult

tag: age

value: 53 year

tag: lab

value: Will Greenleaf, Stanford

tag: source

tag: treatments

value: treatment_term_id:CHEBI:44185; treatment_term_name:Methotrexate; treatment_type:chemical; duration:24; duration_units:hour;

tag: health state

value: chronic myelogenous leukemia (CML)

tag: link

value: ENCBS270ECP at ENCODE; https://www.encodeproject.org/ENCBS270ECP/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from K562 (ENCLB653OSD)

description:
https://www.encodeproject.org/experiments/ENCSR582NPJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR582NPJ
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR017LGQ
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB653OSD
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 1 uM Methotrexate for 48 hours, preserved by flash-freezing

value: treatment_term_id:CHEBI:44186; treatment_term_name:Methotrexate; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS040MUV at ENCODE; https://www.encodeproject.org/ENCBS040MUV/


title: ATAC-seq from K562 (ENCLB626AGV)

description:
https://www.encodeproject.org/experiments/ENCSR304UWR/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR304UWR
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR508LLL
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB626AGV
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 100 nM GSK J4 for 12 hours, preserved by flash-freezing

value: treatment_term_name:GSK J4; treatment_type:chemical; duration:12; duration_units:hour;

value: ENCBS671KBM at ENCODE; https://www.encodeproject.org/ENCBS671KBM/


title: ATAC-seq from K562 (ENCLB770JQW)

description:
https://www.encodeproject.org/experiments/ENCSR800RAH/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR800RAH
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR068MIW
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB770JQW
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: ENCBS295KXU at ENCODE; https://www.encodeproject.org/ENCBS295KXU/


title: ATAC-seq from K562 (ENCLB827XOY)

description:
https://www.encodeproject.org/experiments/ENCSR303NUP/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR303NUP
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR508LLL
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB827XOY
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 5 uM C646 for 12 hours, preserved by flash-freezing

value: ATCC

value: treatment_term_id:CHEBI:132974; treatment_term_name:C646; treatment_type:chemical; duration:12; duration_units:hour;

value: ENCBS035AIQ at ENCODE; https://www.encodeproject.org/ENCBS035AIQ/


title: ATAC-seq from K562 (ENCLB808KRZ)

description:
https://www.encodeproject.org/experiments/ENCSR303NUP/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR303NUP
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR508LLL
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB808KRZ
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: cell line

value: ATAC-seq on human cell line K562

value: ENCBS045GEF at ENCODE; https://www.encodeproject.org/ENCBS045GEF/


title: ATAC-seq from K562 (ENCLB571UDU)

description:
https://www.encodeproject.org/experiments/ENCSR793YFK/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR793YFK
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR068MIW
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB571UDU
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 1 uM NCT-503 for 24 hours, preserved by flash-freezing

value: female

value: adult

value: 53 year

value: treatment_term_name:NCT-503; treatment_type:chemical; duration:24; duration_units:hour;

value: ENCBS742FWL at ENCODE; https://www.encodeproject.org/ENCBS742FWL/


title: ATAC-seq from K562 (ENCLB528RAR)

description:
https://www.encodeproject.org/experiments/ENCSR793YFK/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR793YFK
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR068MIW
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB528RAR
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: Will Greenleaf, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS710ZAL at ENCODE; https://www.encodeproject.org/ENCBS710ZAL/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from K562 (ENCLB139DPW)

description:
https://www.encodeproject.org/experiments/ENCSR096HVF/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR096HVF
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR199HSR
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB139DPW
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 10 nM Bortezomib for 48 hours, preserved by flash-freezing

value: treatment_term_id:CHEBI:52720; treatment_term_name:Bortezomib; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS061RRW at ENCODE; https://www.encodeproject.org/ENCBS061RRW/


title: ATAC-seq from K562 (ENCLB719JWA)

description:
https://www.encodeproject.org/experiments/ENCSR548GGF/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR548GGF
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR745KUZ
encode release date: 2021-03-16
lab: Will Greenleaf, Stanford
library encode accession: ENCLB719JWA
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 10 nM Panobinostat for 4 hours, preserved by flash-freezing

value: ATCC

value: treatment_term_id:CHEBI:85990; treatment_term_name:Panobinostat; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS578IUH at ENCODE; https://www.encodeproject.org/ENCBS578IUH/


title: ATAC-seq from K562 (ENCLB309PPT)

description:
https://www.encodeproject.org/experiments/ENCSR822IYG/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR822IYG
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR508LLL
encode release date: 2021-03-16
lab: Will Greenleaf, Stanford
library encode accession: ENCLB309PPT
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 10 nM Chaetocin for 12 hours, preserved by flash-freezing

value: cell line

value: treatment_term_name:Chaetocin; treatment_type:chemical; duration:12; duration_units:hour;

value: ENCBS067FDX at ENCODE; https://www.encodeproject.org/ENCBS067FDX/


title: ATAC-seq from K562 (ENCLB998RAR)

description:
https://www.encodeproject.org/experiments/ENCSR068MIW/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR068MIW
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB998RAR
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with DMSO for 24 hours, preserved by flash-freezing

value: ATAC-seq on human cell line K562

value: female

value: treatment_term_id:CHEBI:28264; treatment_term_name:DMSO; treatment_type:chemical; duration:24; duration_units:hour;

value: ENCBS928EQX at ENCODE; https://www.encodeproject.org/ENCBS928EQX/


title: ATAC-seq from K562 (ENCLB916UFN)

description:
https://www.encodeproject.org/experiments/ENCSR068MIW/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR068MIW
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB916UFN
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: adult

value: 53 year

value: ENCBS115OED at ENCODE; https://www.encodeproject.org/ENCBS115OED/


title: ATAC-seq from K562 (ENCLB762GSY)

description:
https://www.encodeproject.org/experiments/ENCSR296YAS/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR296YAS
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR745KUZ
encode release date: 2021-03-16
lab: Will Greenleaf, Stanford
library encode accession: ENCLB762GSY
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 10 nM Chaetocin for 4 hours, preserved by flash-freezing

value: Will Greenleaf, Stanford

value: treatment_term_name:Chaetocin; treatment_type:chemical; duration:4; duration_units:hour;

value: chronic myelogenous leukemia (CML)

value: ENCBS061SSR at ENCODE; https://www.encodeproject.org/ENCBS061SSR/


title: ATAC-seq from K562 (ENCLB494NSR)

description:
https://www.encodeproject.org/experiments/ENCSR582NPJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR582NPJ
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR017LGQ
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB494NSR
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: ATCC

value: treatment_term_id:CHEBI:44186; treatment_term_name:Methotrexate; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS981QAM at ENCODE; https://www.encodeproject.org/ENCBS981QAM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from K562 (ENCLB254XFB)

description:
https://www.encodeproject.org/experiments/ENCSR021GTX/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR021GTX
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR017LGQ
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB254XFB
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 1 uM SGC-CBP30 for 48 hours, preserved by flash-freezing

value: cell line

value: treatment_term_name:SGC-CBP30; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS040QOT at ENCODE; https://www.encodeproject.org/ENCBS040QOT/


title: ATAC-seq from K562 (ENCLB335AZR)

description:
https://www.encodeproject.org/experiments/ENCSR524ZSN/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR524ZSN
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR745KUZ
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB335AZR
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 2.5 uM Galeterone for 4 hours, preserved by flash-freezing

value: ATAC-seq on human cell line K562

value: female

value: treatment_term_name:Galeterone; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS814CAT at ENCODE; https://www.encodeproject.org/ENCBS814CAT/


title: ATAC-seq from K562 (ENCLB972WJJ)

description:
https://www.encodeproject.org/experiments/ENCSR021GTX/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR021GTX
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR017LGQ
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB972WJJ
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: adult

value: 53 year

value: ENCBS901YZJ at ENCODE; https://www.encodeproject.org/ENCBS901YZJ/


title: ATAC-seq from K562 (ENCLB829FMV)

description:
https://www.encodeproject.org/experiments/ENCSR522ALT/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR522ALT
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR068MIW
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB829FMV
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 1 uM EED226 for 24 hours, preserved by flash-freezing

value: Will Greenleaf, Stanford

value: treatment_term_name:EED226; treatment_type:chemical; duration:24; duration_units:hour;

value: ENCBS551LHF at ENCODE; https://www.encodeproject.org/ENCBS551LHF/


title: ATAC-seq from K562 (ENCLB536KHU)

description:
https://www.encodeproject.org/experiments/ENCSR304UWR/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR304UWR
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR508LLL
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB536KHU
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: ATCC

value: treatment_term_name:GSK J4; treatment_type:chemical; duration:12; duration_units:hour;

value: chronic myelogenous leukemia (CML)

value: ENCBS707DHV at ENCODE; https://www.encodeproject.org/ENCBS707DHV/


title: ATAC-seq from K562 (ENCLB858ALW)

description:
https://www.encodeproject.org/experiments/ENCSR509MYW/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR509MYW
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR017LGQ
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB858ALW
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 1 uM ARS-853 for 48 hours, preserved by flash-freezing

value: cell line

value: treatment_term_name:ARS-853; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS275HRO at ENCODE; https://www.encodeproject.org/ENCBS275HRO/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from K562 (ENCLB740PQC)

description:
https://www.encodeproject.org/experiments/ENCSR508LLL/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR508LLL
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB740PQC
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with DMSO for 12 hours, preserved by flash-freezing

value: ATAC-seq on human cell line K562

value: female

value: treatment_term_id:CHEBI:28263; treatment_term_name:DMSO; treatment_type:chemical; duration:12; duration_units:hour;

value: ENCBS954NQK at ENCODE; https://www.encodeproject.org/ENCBS954NQK/


title: ATAC-seq from K562 (ENCLB933CKG)

description:
https://www.encodeproject.org/experiments/ENCSR281LEY/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR281LEY
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR199HSR
encode release date: 2021-03-16
lab: Will Greenleaf, Stanford
library encode accession: ENCLB933CKG
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 10 nM Panobinostat for 48 hours, preserved by flash-freezing

value: adult

value: 53 year

value: treatment_term_id:CHEBI:85993; treatment_term_name:Panobinostat; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS431RRO at ENCODE; https://www.encodeproject.org/ENCBS431RRO/


title: ATAC-seq from K562 (ENCLB301WPB)

description:
https://www.encodeproject.org/experiments/ENCSR281LEY/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR281LEY
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR199HSR
encode release date: 2021-03-16
lab: Will Greenleaf, Stanford
library encode accession: ENCLB301WPB
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: Will Greenleaf, Stanford

value: ENCBS871DQP at ENCODE; https://www.encodeproject.org/ENCBS871DQP/


title: ATAC-seq from K562 (ENCLB561EMU)

description:
https://www.encodeproject.org/experiments/ENCSR503EZG/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR503EZG
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR199HSR
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB561EMU
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 1 uM Crizotinib for 48 hours, preserved by flash-freezing

value: ATCC

value: treatment_term_id:CHEBI:64313; treatment_term_name:Crizotinib; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS657GZF at ENCODE; https://www.encodeproject.org/ENCBS657GZF/


title: ATAC-seq from K562 (ENCLB063KRP)

description:
https://www.encodeproject.org/experiments/ENCSR508LLL/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR508LLL
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB063KRP
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: cell line

value: chronic myelogenous leukemia (CML)

value: ENCBS302PBJ at ENCODE; https://www.encodeproject.org/ENCBS302PBJ/


title: ATAC-seq from K562 (ENCLB011ONQ)

description:
https://www.encodeproject.org/experiments/ENCSR503EZG/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR503EZG
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR199HSR
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB011ONQ
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: ENCBS929WYN at ENCODE; https://www.encodeproject.org/ENCBS929WYN/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from K562 (ENCLB961SAP)

description:
https://www.encodeproject.org/experiments/ENCSR017LGQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR017LGQ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB961SAP
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with DMSO for 48 hours, preserved by flash-freezing

value: ATAC-seq on human cell line K562

value: female

value: treatment_term_id:CHEBI:28265; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS820DTR at ENCODE; https://www.encodeproject.org/ENCBS820DTR/


title: ATAC-seq from K562 (ENCLB616QWM)

description:
https://www.encodeproject.org/experiments/ENCSR017LGQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR017LGQ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB616QWM
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: adult

value: 53 year

value: ENCBS205JLF at ENCODE; https://www.encodeproject.org/ENCBS205JLF/


title: ATAC-seq from K562 (ENCLB411YFT)

description:
https://www.encodeproject.org/experiments/ENCSR761CBY/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR761CBY
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR508LLL
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB411YFT
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 0.5 uM MB-3 for 12 hours, preserved by flash-freezing

value: Will Greenleaf, Stanford

value: treatment_term_name:MB-3; treatment_type:chemical; duration:12; duration_units:hour;

value: ENCBS957WOJ at ENCODE; https://www.encodeproject.org/ENCBS957WOJ/


title: ATAC-seq from K562 (ENCLB385IRW)

description:
https://www.encodeproject.org/experiments/ENCSR548GGF/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR548GGF
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR745KUZ
encode release date: 2021-03-16
lab: Will Greenleaf, Stanford
library encode accession: ENCLB385IRW
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: ATCC

value: treatment_term_id:CHEBI:85990; treatment_term_name:Panobinostat; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS092SWO at ENCODE; https://www.encodeproject.org/ENCBS092SWO/


title: ATAC-seq from K562 (ENCLB475MGB)

description:
https://www.encodeproject.org/experiments/ENCSR761CBY/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR761CBY
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR508LLL
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB475MGB
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: cell line

value: chronic myelogenous leukemia (CML)

value: ENCBS940HAS at ENCODE; https://www.encodeproject.org/ENCBS940HAS/


title: ATAC-seq from K562 (ENCLB294ITY)

description:
https://www.encodeproject.org/experiments/ENCSR259HTB/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR259HTB
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR632VDU
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB294ITY
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 1 uM AR-42 for 24 hours, preserved by flash-freezing

value: treatment_term_name:AR-42; treatment_type:chemical; duration:24; duration_units:hour;

value: ENCBS479QSP at ENCODE; https://www.encodeproject.org/ENCBS479QSP/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from K562 (ENCLB657YGS)

description:
https://www.encodeproject.org/experiments/ENCSR259HTB/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR259HTB
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR632VDU
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB657YGS
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: ATAC-seq on human cell line K562

value: female

value: ENCBS014FIE at ENCODE; https://www.encodeproject.org/ENCBS014FIE/


title: ATAC-seq from K562 (ENCLB760ORB)

description:
https://www.encodeproject.org/experiments/ENCSR296YAS/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR296YAS
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR745KUZ
encode release date: 2021-03-16
lab: Will Greenleaf, Stanford
library encode accession: ENCLB760ORB
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: adult

value: 53 year

value: treatment_term_name:Chaetocin; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS009KGW at ENCODE; https://www.encodeproject.org/ENCBS009KGW/


title: ATAC-seq from K562 (ENCLB467TFU)

description:
https://www.encodeproject.org/experiments/ENCSR741QNS/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR741QNS
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR632VDU
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB467TFU
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 5 uM C646 for 24 hours, preserved by flash-freezing

value: Will Greenleaf, Stanford

value: treatment_term_id:CHEBI:132975; treatment_term_name:C646; treatment_type:chemical; duration:24; duration_units:hour;

value: ENCBS104UHS at ENCODE; https://www.encodeproject.org/ENCBS104UHS/


title: ATAC-seq from K562 (ENCLB839WQR)

description:
https://www.encodeproject.org/experiments/ENCSR745KUZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR745KUZ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB839WQR
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with DMSO for 4 hours, preserved by flash-freezing

value: ATCC

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS043WZG at ENCODE; https://www.encodeproject.org/ENCBS043WZG/


title: ATAC-seq from K562 (ENCLB772BNZ)

description:
https://www.encodeproject.org/experiments/ENCSR005BVE/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR005BVE
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR068MIW
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB772BNZ
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 1 uM SGC-CBP30 for 24 hours, preserved by flash-freezing

value: cell line

value: treatment_term_name:SGC-CBP30; treatment_type:chemical; duration:24; duration_units:hour;

value: chronic myelogenous leukemia (CML)

value: ENCBS968CKB at ENCODE; https://www.encodeproject.org/ENCBS968CKB/


title: ATAC-seq from K562 (ENCLB880QJI)

description:
https://www.encodeproject.org/experiments/ENCSR005BVE/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR005BVE
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR068MIW
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB880QJI
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: ATAC-seq on human cell line K562

value: ENCBS903JDQ at ENCODE; https://www.encodeproject.org/ENCBS903JDQ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from K562 (ENCLB411SJU)

description:
https://www.encodeproject.org/experiments/ENCSR524ZSN/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR524ZSN
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR745KUZ
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB411SJU
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: female

value: adult

value: treatment_term_name:Galeterone; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS744UDX at ENCODE; https://www.encodeproject.org/ENCBS744UDX/


title: ATAC-seq from K562 (ENCLB123PAM)

description:
https://www.encodeproject.org/experiments/ENCSR745KUZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR745KUZ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB123PAM
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: 53 year

value: Will Greenleaf, Stanford

value: ENCBS232BQZ at ENCODE; https://www.encodeproject.org/ENCBS232BQZ/


title: ATAC-seq from K562 (ENCLB170PBR)

description:
https://www.encodeproject.org/experiments/ENCSR522ALT/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR522ALT
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR068MIW
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB170PBR
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: ATCC

value: treatment_term_name:EED226; treatment_type:chemical; duration:24; duration_units:hour;

value: ENCBS491DVO at ENCODE; https://www.encodeproject.org/ENCBS491DVO/


title: ATAC-seq from K562 (ENCLB367HZK)

description:
https://www.encodeproject.org/experiments/ENCSR509MYW/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR509MYW
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR017LGQ
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB367HZK
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: cell line

value: treatment_term_name:ARS-853; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS447HGE at ENCODE; https://www.encodeproject.org/ENCBS447HGE/


title: ATAC-seq from K562 (ENCLB593CJK)

description:
https://www.encodeproject.org/experiments/ENCSR741QNS/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR741QNS
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR632VDU
encode release date: 2021-03-15
lab: Will Greenleaf, Stanford
library encode accession: ENCLB593CJK
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: treatment_term_id:CHEBI:132975; treatment_term_name:C646; treatment_type:chemical; duration:24; duration_units:hour;

value: chronic myelogenous leukemia (CML)

value: ENCBS430OFB at ENCODE; https://www.encodeproject.org/ENCBS430OFB/


title: ATAC-seq from K562 (ENCLB352SDY)

description:
https://www.encodeproject.org/experiments/ENCSR737HKX/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR737HKX
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR632VDU
encode release date: 2021-03-16
lab: Will Greenleaf, Stanford
library encode accession: ENCLB352SDY
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line treated with 10 nM Chaetocin for 24 hours, preserved by flash-freezing

value: ATAC-seq on human cell line K562

value: treatment_term_name:Chaetocin; treatment_type:chemical; duration:24; duration_units:hour;

value: ENCBS670ZIT at ENCODE; https://www.encodeproject.org/ENCBS670ZIT/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from K562 (ENCLB906OPV)

description:
https://www.encodeproject.org/experiments/ENCSR737HKX/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR737HKX
assay title: ATAC-seq
assembly: GRCh38
possible controls: ENCSR632VDU
encode release date: 2021-03-16
lab: Will Greenleaf, Stanford
library encode accession: ENCLB906OPV
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: female

value: adult

value: ENCBS336CLU at ENCODE; https://www.encodeproject.org/ENCBS336CLU/


title: DNase-seq from inflammatory macrophage (ENCLB872ZTQ)

description:
https://www.encodeproject.org/experiments/ENCSR643ZGR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR643ZGR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB872ZTQ
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (21 years) inflammatory macrophage primary cell treated with lipopolysaccharide for 1 hour

value: inflammatory macrophage

value: primary cell

value: male

value: 21 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:1; duration_units:hour;

value: ENCBS832VLJ at ENCODE; https://www.encodeproject.org/ENCBS832VLJ/

value: Derived from ENCODE donor ENCDO733YAB; https://www.encodeproject.org/ENCDO733YAB/


title: DNase-seq from liver (ENCLB520BVD)

description:
https://www.encodeproject.org/experiments/ENCSR158YXM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR158YXM
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2017-11-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB520BVD
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Homo sapiens embryo (59 days) liver tissue

value: liver

value: tissue

value: not collected

value: embryonic

value: 59 day

value: BDRL

value: ENCBS150DWF at ENCODE; https://www.encodeproject.org/ENCBS150DWF/

value: Derived from ENCODE donor ENCDO163CLX; https://www.encodeproject.org/ENCDO163CLX/


title: DNase-seq from inflammatory macrophage (ENCLB731GYW)

description:
https://www.encodeproject.org/experiments/ENCSR643ZGR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR643ZGR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB731GYW
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (40 years) inflammatory macrophage primary cell treated with lipopolysaccharide for 1 hour

value: inflammatory macrophage

value: adult

value: 40 year

value: ENCBS689NWG at ENCODE; https://www.encodeproject.org/ENCBS689NWG/

value: Derived from ENCODE donor ENCDO661IWU; https://www.encodeproject.org/ENCDO661IWU/


title: DNase-seq from liver (ENCLB163DHJ)

description:
https://www.encodeproject.org/experiments/ENCSR158YXM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR158YXM
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2017-11-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB163DHJ

source_name: Homo sapiens embryo (80 days) liver tissue

value: 80 day

value: John Stamatoyannopoulos, UW

value: ENCBS064CNC at ENCODE; https://www.encodeproject.org/ENCBS064CNC/

value: Derived from ENCODE donor ENCDO662IIE; https://www.encodeproject.org/ENCDO662IIE/


title: DNase-seq from suppressor macrophage (ENCLB925CYY)

description:
https://www.encodeproject.org/experiments/ENCSR011VJK/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR011VJK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB925CYY
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (40 years) suppressor macrophage primary cell treated with lipopolysaccharide for 1 hour

value: suppressor macrophage

value: primary cell

value: male

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:1; duration_units:hour;

value: ENCBS857VYG at ENCODE; https://www.encodeproject.org/ENCBS857VYG/


title: DNase-seq from cardiac fibroblast (ENCLB839QIF)

description:
https://www.encodeproject.org/experiments/ENCSR856NXV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR856NXV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2017-10-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB839QIF
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens female embryo (98 days) cardiac fibroblast primary cell

value: cardiac fibroblast

value: female

value: embryonic

value: 98 day

value: BDRL

value: ENCBS743HHD at ENCODE; https://www.encodeproject.org/ENCBS743HHD/

value: Derived from ENCODE donor ENCDO298NZG; https://www.encodeproject.org/ENCDO298NZG/


title: DNase-seq from cardiac fibroblast (ENCLB584PEG)

description:
https://www.encodeproject.org/experiments/ENCSR856NXV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR856NXV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2017-10-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB584PEG
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens female embryo (94 days) cardiac fibroblast primary cell

value: 94 day

value: ENCBS385GBH at ENCODE; https://www.encodeproject.org/ENCBS385GBH/

value: Derived from ENCODE donor ENCDO754GEB; https://www.encodeproject.org/ENCDO754GEB/


title: DNase-seq from kidney tubule cell (ENCLB185BDD)

description:
https://www.encodeproject.org/experiments/ENCSR257CIZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR257CIZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2018-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB185BDD
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Homo sapiens female adult (80 years) kidney tubule primary cell treated with 5 uM cisplatin

value: kidney tubule cell

value: adult

value: 80 year

value: John Stamatoyannopoulos, UW

value: Unknown Source

value: ENCBS529BVK at ENCODE; https://www.encodeproject.org/ENCBS529BVK/

value: Derived from ENCODE donor ENCDO421EJG; https://www.encodeproject.org/ENCDO421EJG/


title: DNase-seq from intestine (ENCLB683DHP)

description:
https://www.encodeproject.org/experiments/ENCSR655WKX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR655WKX
assay title: DNase-seq
assembly: mm10
encode release date: 2018-01-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB683DHP

organism: Mus musculus

source_name: Mus musculus strain B6NCrl mixed sex embryo (14.5 days) intestine tissue

value: intestine

value: tissue

value: pooled male and female

value: Mark Groudine

tag: model organism mating status

value: virgin

value: ENCBS574JBA at ENCODE; https://www.encodeproject.org/ENCBS574JBA/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ATAC-seq from monocyte (ENCLB956IVR)

description:
https://www.encodeproject.org/experiments/ENCSR862JVD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR862JVD
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-11-15
lab: Ross Hardison, PennState
library encode accession: ENCLB956IVR
size range: 156-312
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells

source_name: Mus musculus strain C57BL/6J adult (5-6 weeks) monocyte primary cell

value: monocyte

value: primary cell

value: monocytes from peripheral blood

value: not collected

value: 5-6 week

value: Ross Hardison, PennState

value: David Bodine

value: ENCBS048TJM at ENCODE; https://www.encodeproject.org/ENCBS048TJM/

value: Derived from ENCODE donor ENCDO072AAA; https://www.encodeproject.org/ENCDO072AAA/


title: DNase-seq from hematopoietic multipotent progenitor cell (ENCLB569IND)

description:
https://www.encodeproject.org/experiments/ENCSR115YPI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR115YPI
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2018-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB569IND
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Homo sapiens male adult (25 years) hematopoietic multipotent progenitor in vitro differentiated cells treated with erythropoietin for 20 days, hydrocortisone succinate for 20 days, kit ligand for 20 days, interleukin-3 for 20 days

value: in vitro differentiated cells

value: male

value: adult

value: 25 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:81579; treatment_term_name:erythropoietin; treatment_type:chemical; duration:20; duration_units:day; treatment_term_id:CHEBI:31677; treatment_term_name:hydrocortisone succinate; treatment_type:chemical; duration:20; duration_units:day; treatment_term_id:UniProtKB:P21583; treatment_term_name:kit ligand; treatment_type:protein; duration:20; duration_units:day; treatment_term_id:UniProtKB:P08700; treatment_term_name:interleukin-3; treatment_type:protein; duration:20; duration_units:day;

value: ENCBS233BAS at ENCODE; https://www.encodeproject.org/ENCBS233BAS/

value: Derived from ENCODE donor ENCDO937OUY; https://www.encodeproject.org/ENCDO937OUY/


title: DNase-seq from intestine (ENCLB132WYL)

description:
https://www.encodeproject.org/experiments/ENCSR655WKX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR655WKX
assay title: DNase-seq
assembly: mm10
encode release date: 2018-01-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB132WYL

value: intestine

value: tissue

value: pooled male and female

value: embryonic

value: Mark Groudine

value: virgin

value: ENCBS850JRM at ENCODE; https://www.encodeproject.org/ENCBS850JRM/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: DNase-seq from liver (ENCLB617IQK)

description:
https://www.encodeproject.org/experiments/ENCSR561FZE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR561FZE
assay title: DNase-seq
assembly: mm10
encode release date: 2017-11-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB617IQK

source_name: Mus musculus strain B6NCrl mixed sex embryo (11.5 days) liver tissue

value: liver

value: ENCBS302FDE at ENCODE; https://www.encodeproject.org/ENCBS302FDE/


title: ATAC-seq from neutrophil (ENCLB037IIZ)

description:
https://www.encodeproject.org/experiments/ENCSR351YUI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR351YUI
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-11-15
lab: Ross Hardison, PennState
library encode accession: ENCLB037IIZ
size range: 151-379
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells

source_name: Mus musculus strain C57BL/6J adult (5-6 weeks) neutrophil primary cell

value: neutrophil

value: primary cell

value: neutrophils from peripheral blood

value: not collected

value: adult

value: 5-6 week

value: Ross Hardison, PennState

value: David Bodine

value: ENCBS836RGY at ENCODE; https://www.encodeproject.org/ENCBS836RGY/

value: Derived from ENCODE donor ENCDO072AAA; https://www.encodeproject.org/ENCDO072AAA/


title: Agrin1

status: Public on Apr 05 2021

city: Rehovot

first: Eldad

last: Tzahor

address: 234 Herzl Street

country: Israel

institute: Weizmann Institute of Science

description: Adult female, 12 weeks old

library_source: transcriptomic

data_processing:
Reads were trimmed using cutadapt
After trimming the reads were aligned to the mouse genome using STAR (2.4.2a)
Counting proceeded over genes annotated in Refseq, using htseq-count
Normalization and differential expression was performed using DESeq2 (version 1.10.1)
Genome_build: Mus Musculus mm10
Supplementary_files_format_and_content: Excel file includes the normalized counts

molecule: polyA RNA

source_name: WT heart with LAD ligation treated with Agrin

growth_protocol: Regular rodent growing conditions

extract_protocol:
RNA was extracted using miRNeasy kit (217004, Qiagen), according to the manufacturer instructions.
Inhouse poly A based RNA seq

treatment_protocol: Mice were sedated with isoflurane (Abbot laboratories) and were artificially ventilated following tracheal intubation. Experimental myocardial infarction was induced by permanent ligation of the left anterior descending coronary artery (LAD ligation) as described before. Following the closure of the thoracic wall, mice were injected s.c with Buprenorphin (0.066mg/Kg) as analgestic and were warmed for several minutes until recovery. RNA was extracted 2 weeks post MI.

tag: tissue

value: Heart

value: 12 weeks old

value: female

tag: treatment

value: MI+Agrin


title: MI3

description: Adult female, 12 weeks old

source_name: WT heart with LAD ligation treated with PBS

value: MI+ PBS


title: Agrin5

description: Adult female, 12 weeks old


title: MI5

description: Adult female, 12 weeks old


title: DNase-seq from forebrain (ENCLB792ZMJ)

description:
https://www.encodeproject.org/experiments/ENCSR014SFF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR014SFF
assay title: DNase-seq
assembly: mm10
encode release date: 2017-09-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB792ZMJ
instrument models: Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Mus musculus strain B6NCrl mixed sex embryo (11.5 days) forebrain tissue

value: forebrain

value: tissue

value: pooled male and female

value: embryonic

value: John Stamatoyannopoulos, UW

value: Mark Groudine

value: ENCBS611TZC at ENCODE; https://www.encodeproject.org/ENCBS611TZC/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: DNase-seq from midbrain (ENCLB893AUS)

description:
https://www.encodeproject.org/experiments/ENCSR773SAG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR773SAG
assay title: DNase-seq
assembly: mm10
encode release date: 2017-09-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB893AUS
instrument models: Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Mus musculus strain B6NCrl mixed sex embryo (10.5 days) midbrain tissue

value: midbrain

value: ENCBS264DUP at ENCODE; https://www.encodeproject.org/ENCBS264DUP/


title: MI2

description: Adult female, 12 weeks old


title: Agrin3

description: Adult female, 12 weeks old


title: MI1

description: Adult female, 12 weeks old


title: ATAC-seq from neutrophil (ENCLB325VLO)

description:
https://www.encodeproject.org/experiments/ENCSR351YUI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR351YUI
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-11-15
lab: Ross Hardison, PennState
library encode accession: ENCLB325VLO
size range: 151-347
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells

value: neutrophil

value: primary cell

value: neutrophils from peripheral blood

value: not collected

value: adult

value: 5-6 week

value: Ross Hardison, PennState

value: David Bodine

value: ENCBS037MZW at ENCODE; https://www.encodeproject.org/ENCBS037MZW/


title: SHAM 4

description: Adult female, 12 weeks old

source_name: WT Sham operated heart

value: Heart

value: 12 weeks old

value: female

value: Sham


title: ATAC-seq from monocyte (ENCLB916UMC)

description:
https://www.encodeproject.org/experiments/ENCSR862JVD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR862JVD
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-11-15
lab: Ross Hardison, PennState
library encode accession: ENCLB916UMC
size range: 153-309
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells

value: monocyte

value: monocytes from peripheral blood

value: ENCBS022OZN at ENCODE; https://www.encodeproject.org/ENCBS022OZN/

value: Derived from ENCODE donor ENCDO072AAA; https://www.encodeproject.org/ENCDO072AAA/


title: SHAM 3

description: Adult female, 12 weeks old


title: SHAM 5

description: Adult female, 12 weeks old


title: ATAC-seq from hematopoietic stem cell (ENCLB328JAB)

description:
https://www.encodeproject.org/experiments/ENCSR366VBB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR366VBB
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-11-15
lab: Ross Hardison, PennState
library encode accession: ENCLB328JAB
size range: 125-278
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells

source_name: Mus musculus strain C57BL/6J adult (5-6 weeks) hematopoietic stem primary cell

value: hematopoietic stem cell

value: Hematopoietic stem cell (HSC)

value: unknown

value: ENCBS855EXW at ENCODE; https://www.encodeproject.org/ENCBS855EXW/


title: TF ChIP-seq from HepG2 (ENCLB847YZP)

status: Public on Mar 30 2021

description:
https://www.encodeproject.org/experiments/ENCSR692GFR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR692GFR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB847YZP
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting KMT2A

tag: antibody

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS152UBH at ENCODE; https://www.encodeproject.org/ENCBS152UBH/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: Agrin4

description: Adult female, 12 weeks old

value: Heart

value: 12 weeks old

value: female

value: MI+Agrin


title: TF ChIP-seq from HepG2 (ENCLB616OKH)

description:
https://www.encodeproject.org/experiments/ENCSR692GFR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR692GFR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB616OKH
fragmentation methods: sonication (generic)

value: ENCBS190EVQ at ENCODE; https://www.encodeproject.org/ENCBS190EVQ/


title: TF ChIP-seq from HepG2 (ENCLB660BAP)

description:
https://www.encodeproject.org/experiments/ENCSR689JMN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR689JMN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB660BAP
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting PREB

value: PREB

value: ENCBS270FAB at ENCODE; https://www.encodeproject.org/ENCBS270FAB/


title: TF ChIP-seq from HepG2 (ENCLB714FED)

description:
https://www.encodeproject.org/experiments/ENCSR689JMN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR689JMN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB714FED
fragmentation methods: sonication (generic)

value: ENCBS410ZWO at ENCODE; https://www.encodeproject.org/ENCBS410ZWO/


title: TF ChIP-seq from HepG2 (ENCLB355CJK)

description:
https://www.encodeproject.org/experiments/ENCSR647CXR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR647CXR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB355CJK
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting NKX3-1

value: cell line

value: ENCBS187CVQ at ENCODE; https://www.encodeproject.org/ENCBS187CVQ/


title: TF ChIP-seq from HepG2 (ENCLB914WWZ)

description:
https://www.encodeproject.org/experiments/ENCSR661PKJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR661PKJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB914WWZ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ONECUT2

value: male

value: hepatocellular carcinoma

value: ENCBS696BNV at ENCODE; https://www.encodeproject.org/ENCBS696BNV/


title: TF ChIP-seq from HepG2 (ENCLB324BYM)

description:
https://www.encodeproject.org/experiments/ENCSR658YLN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR658YLN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB324BYM
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting PATZ1

value: child

value: 15 year

value: Richard Myers, HAIB

value: ENCBS605PPK at ENCODE; https://www.encodeproject.org/ENCBS605PPK/


title: TF ChIP-seq from HepG2 (ENCLB764IDZ)

description:
https://www.encodeproject.org/experiments/ENCSR669PVF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR669PVF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB764IDZ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF597

value: Richard Myers

value: ENCBS056IDU at ENCODE; https://www.encodeproject.org/ENCBS056IDU/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB522FAV)

description:
https://www.encodeproject.org/experiments/ENCSR658YLN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR658YLN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB522FAV
fragmentation methods: sonication (generic)

value: ENCBS415ISX at ENCODE; https://www.encodeproject.org/ENCBS415ISX/


title: TF ChIP-seq from HepG2 (ENCLB789JMD)

description:
https://www.encodeproject.org/experiments/ENCSR669PVF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR669PVF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB789JMD
fragmentation methods: sonication (generic)

value: ENCBS601UBB at ENCODE; https://www.encodeproject.org/ENCBS601UBB/


title: TF ChIP-seq from HepG2 (ENCLB246PJW)

description:
https://www.encodeproject.org/experiments/ENCSR647BZJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR647BZJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB246PJW
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting YEATS2

value: ENCBS798RRT at ENCODE; https://www.encodeproject.org/ENCBS798RRT/


title: TF ChIP-seq from HepG2 (ENCLB632FQV)

description:
https://www.encodeproject.org/experiments/ENCSR647CXR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR647CXR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB632FQV
fragmentation methods: sonication (generic)

value: ENCBS096GXB at ENCODE; https://www.encodeproject.org/ENCBS096GXB/


title: SHAM 2

description: Adult female, 12 weeks old

value: Heart

value: 12 weeks old

value: female

value: Sham


title: TF ChIP-seq from HepG2 (ENCLB390YWZ)

description:
https://www.encodeproject.org/experiments/ENCSR672BSA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR672BSA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB390YWZ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ETS1

value: cell line

value: male

value: hepatocellular carcinoma

value: ENCBS528VCR at ENCODE; https://www.encodeproject.org/ENCBS528VCR/


title: TF ChIP-seq from HepG2 (ENCLB400GCU)

description:
https://www.encodeproject.org/experiments/ENCSR647BZJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR647BZJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB400GCU
fragmentation methods: sonication (generic)

value: child

value: 15 year

value: Richard Myers, HAIB

value: ENCBS328WHQ at ENCODE; https://www.encodeproject.org/ENCBS328WHQ/


title: TF ChIP-seq from HepG2 (ENCLB007KTR)

description:
https://www.encodeproject.org/experiments/ENCSR661PKJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR661PKJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB007KTR
fragmentation methods: sonication (generic)

value: Richard Myers

value: ENCBS688JYE at ENCODE; https://www.encodeproject.org/ENCBS688JYE/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB759SHW)

description:
https://www.encodeproject.org/experiments/ENCSR639UKJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR639UKJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB759SHW
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting MLLT10

value: ENCBS860AAW at ENCODE; https://www.encodeproject.org/ENCBS860AAW/


title: TF ChIP-seq from HepG2 (ENCLB755JJO)

description:
https://www.encodeproject.org/experiments/ENCSR643XPG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR643XPG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB755JJO
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF720

value: ENCBS159CVG at ENCODE; https://www.encodeproject.org/ENCBS159CVG/


title: TF ChIP-seq from HepG2 (ENCLB176AUL)

description:
https://www.encodeproject.org/experiments/ENCSR643XPG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR643XPG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB176AUL
fragmentation methods: sonication (generic)

value: ENCBS530QRB at ENCODE; https://www.encodeproject.org/ENCBS530QRB/


title: TF ChIP-seq from HepG2 (ENCLB751KPD)

description:
https://www.encodeproject.org/experiments/ENCSR998YJI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR998YJI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB751KPD
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF503

value: ENCBS067CFB at ENCODE; https://www.encodeproject.org/ENCBS067CFB/


title: TF ChIP-seq from HepG2 (ENCLB017PQV)

description:
https://www.encodeproject.org/experiments/ENCSR999JKC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR999JKC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB017PQV
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting HOXA3

value: ENCBS531LFZ at ENCODE; https://www.encodeproject.org/ENCBS531LFZ/


title: TF ChIP-seq from HepG2 (ENCLB788TKL)

description:
https://www.encodeproject.org/experiments/ENCSR639UKJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR639UKJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB788TKL
fragmentation methods: sonication (generic)

value: ENCBS620CEO at ENCODE; https://www.encodeproject.org/ENCBS620CEO/


title: TF ChIP-seq from HepG2 (ENCLB447VMM)

description:
https://www.encodeproject.org/experiments/ENCSR998YJI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR998YJI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB447VMM
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS161QWI at ENCODE; https://www.encodeproject.org/ENCBS161QWI/


title: TF ChIP-seq from HepG2 (ENCLB734ZSM)

description:
https://www.encodeproject.org/experiments/ENCSR999JKC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR999JKC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB734ZSM
fragmentation methods: sonication (generic)

value: male

value: hepatocellular carcinoma

value: ENCBS685SNT at ENCODE; https://www.encodeproject.org/ENCBS685SNT/


title: TF ChIP-seq from K562 (ENCLB559WCF)

description:
https://www.encodeproject.org/experiments/ENCSR992KLV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR992KLV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR080NUS
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB559WCF
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting MYNN

value: MYNN

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS571TBL at ENCODE; https://www.encodeproject.org/ENCBS571TBL/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB897PES)

description:
https://www.encodeproject.org/experiments/ENCSR672BSA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR672BSA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB897PES
fragmentation methods: sonication (generic)

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS579IIZ at ENCODE; https://www.encodeproject.org/ENCBS579IIZ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from K562 (ENCLB122KOH)

description:
https://www.encodeproject.org/experiments/ENCSR992KLV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR992KLV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR080NUS
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB122KOH
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS945WGZ at ENCODE; https://www.encodeproject.org/ENCBS945WGZ/


title: TF ChIP-seq from HepG2 (ENCLB987GGN)

description:
https://www.encodeproject.org/experiments/ENCSR604VAE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR604VAE
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-16
lab: Richard Myers, HAIB
library encode accession: ENCLB987GGN
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting PHF8

value: male

value: hepatocellular carcinoma

value: ENCBS940CWR at ENCODE; https://www.encodeproject.org/ENCBS940CWR/


title: TF ChIP-seq from HepG2 (ENCLB639DWN)

description:
https://www.encodeproject.org/experiments/ENCSR989QTM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR989QTM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB639DWN
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting NCOA5

value: ENCBS723MXA at ENCODE; https://www.encodeproject.org/ENCBS723MXA/


title: TF ChIP-seq from HepG2 (ENCLB167DHT)

description:
https://www.encodeproject.org/experiments/ENCSR988EVQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR988EVQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB167DHT
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting XBP1

value: ENCBS324JVE at ENCODE; https://www.encodeproject.org/ENCBS324JVE/


title: TF ChIP-seq from HepG2 (ENCLB703SEX)

description:
https://www.encodeproject.org/experiments/ENCSR988EVQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR988EVQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB703SEX
fragmentation methods: sonication (generic)

value: ENCBS302TYT at ENCODE; https://www.encodeproject.org/ENCBS302TYT/


title: TF ChIP-seq from HepG2 (ENCLB995KAG)

description:
https://www.encodeproject.org/experiments/ENCSR603BJQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR603BJQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB995KAG
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting FOXK1

value: ENCBS412SUP at ENCODE; https://www.encodeproject.org/ENCBS412SUP/


title: TF ChIP-seq from HepG2 (ENCLB028UFP)

description:
https://www.encodeproject.org/experiments/ENCSR603BJQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR603BJQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB028UFP
fragmentation methods: sonication (generic)

value: ENCBS942RGV at ENCODE; https://www.encodeproject.org/ENCBS942RGV/


title: TF ChIP-seq from HepG2 (ENCLB656VKD)

description:
https://www.encodeproject.org/experiments/ENCSR604VAE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR604VAE
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-16
lab: Richard Myers, HAIB
library encode accession: ENCLB656VKD
fragmentation methods: sonication (generic)

value: ENCBS277RIP at ENCODE; https://www.encodeproject.org/ENCBS277RIP/


title: TF ChIP-seq from HepG2 (ENCLB170GWQ)

description:
https://www.encodeproject.org/experiments/ENCSR601KKB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR601KKB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB170GWQ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting HMGXB3

value: child

value: ENCBS844PMX at ENCODE; https://www.encodeproject.org/ENCBS844PMX/


title: TF ChIP-seq from HepG2 (ENCLB598DLW)

description:
https://www.encodeproject.org/experiments/ENCSR983FBD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR983FBD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB598DLW
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting NFE2

value: 15 year

value: Richard Myers, HAIB

value: ENCBS521RHT at ENCODE; https://www.encodeproject.org/ENCBS521RHT/


title: TF ChIP-seq from HepG2 (ENCLB974ONP)

description:
https://www.encodeproject.org/experiments/ENCSR983FBD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR983FBD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB974ONP
fragmentation methods: sonication (generic)

value: Richard Myers

value: ENCBS897MOA at ENCODE; https://www.encodeproject.org/ENCBS897MOA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB263OJD)

description:
https://www.encodeproject.org/experiments/ENCSR587BVQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR587BVQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB263OJD
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting TFAP4

value: cell line

value: male

value: ENCBS007OPW at ENCODE; https://www.encodeproject.org/ENCBS007OPW/


title: TF ChIP-seq from HepG2 (ENCLB516CKA)

description:
https://www.encodeproject.org/experiments/ENCSR587BVQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR587BVQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB516CKA
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: ENCBS647IOM at ENCODE; https://www.encodeproject.org/ENCBS647IOM/


title: TF ChIP-seq from HepG2 (ENCLB555UNM)

description:
https://www.encodeproject.org/experiments/ENCSR583KLD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR583KLD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB555UNM
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting TEF

value: TEF

value: ENCBS528AEP at ENCODE; https://www.encodeproject.org/ENCBS528AEP/


title: TF ChIP-seq from HepG2 (ENCLB878KOK)

description:
https://www.encodeproject.org/experiments/ENCSR981BHT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR981BHT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB878KOK
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ADNP

value: ADNP

value: ENCBS602YST at ENCODE; https://www.encodeproject.org/ENCBS602YST/


title: TF ChIP-seq from HepG2 (ENCLB744MNL)

description:
https://www.encodeproject.org/experiments/ENCSR981BHT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR981BHT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB744MNL
fragmentation methods: sonication (generic)

value: child

value: ENCBS149OLX at ENCODE; https://www.encodeproject.org/ENCBS149OLX/


title: TF ChIP-seq from HepG2 (ENCLB954AQG)

description:
https://www.encodeproject.org/experiments/ENCSR980EGJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR980EGJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB954AQG
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting TP53

value: 15 year

value: ENCBS842OSF at ENCODE; https://www.encodeproject.org/ENCBS842OSF/


title: TF ChIP-seq from HepG2 (ENCLB879UDH)

description:
https://www.encodeproject.org/experiments/ENCSR980EGJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR980EGJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB879UDH
fragmentation methods: sonication (generic)

value: Richard Myers, HAIB

value: ENCBS265PMJ at ENCODE; https://www.encodeproject.org/ENCBS265PMJ/


title: TF ChIP-seq from HepG2 (ENCLB059YYW)

description:
https://www.encodeproject.org/experiments/ENCSR583KLD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR583KLD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB059YYW
fragmentation methods: sonication (generic)

value: Richard Myers

value: ENCBS321GYE at ENCODE; https://www.encodeproject.org/ENCBS321GYE/


title: TF ChIP-seq from K562 (ENCLB598KKN)

description:
https://www.encodeproject.org/experiments/ENCSR582IAO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR582IAO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR589YUZ
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB598KKN
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting SRF

value: SRF

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS065TQS at ENCODE; https://www.encodeproject.org/ENCBS065TQS/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB969SCL)

description:
https://www.encodeproject.org/experiments/ENCSR582IAO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR582IAO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR589YUZ
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB969SCL
fragmentation methods: sonication (generic)

value: ENCBS878HFA at ENCODE; https://www.encodeproject.org/ENCBS878HFA/


title: TF ChIP-seq from HepG2 (ENCLB503QPL)

description:
https://www.encodeproject.org/experiments/ENCSR989QTM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR989QTM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB503QPL
fragmentation methods: sonication (generic)

value: male

value: hepatocellular carcinoma

value: child

value: ENCBS546UGT at ENCODE; https://www.encodeproject.org/ENCBS546UGT/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB152TAV)

description:
https://www.encodeproject.org/experiments/ENCSR959XNY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR959XNY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB152TAV
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting MED1

value: 15 year

value: Richard Myers, HAIB

value: ENCBS237HMK at ENCODE; https://www.encodeproject.org/ENCBS237HMK/


title: TF ChIP-seq from HepG2 (ENCLB447XIT)

description:
https://www.encodeproject.org/experiments/ENCSR581KCO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR581KCO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB447XIT
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting MYBL2

value: Richard Myers

value: ENCBS795TNS at ENCODE; https://www.encodeproject.org/ENCBS795TNS/


title: TF ChIP-seq from HepG2 (ENCLB780HIX)

description:
https://www.encodeproject.org/experiments/ENCSR581KCO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR581KCO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB780HIX
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS528AOV at ENCODE; https://www.encodeproject.org/ENCBS528AOV/


title: TF ChIP-seq from HepG2 (ENCLB723LGH)

description:
https://www.encodeproject.org/experiments/ENCSR959XNY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR959XNY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB723LGH
fragmentation methods: sonication (generic)

value: ENCBS215SHN at ENCODE; https://www.encodeproject.org/ENCBS215SHN/


title: TF ChIP-seq from HepG2 (ENCLB365PNO)

description:
https://www.encodeproject.org/experiments/ENCSR959COF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR959COF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB365PNO
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZBTB10

value: ENCBS914DZS at ENCODE; https://www.encodeproject.org/ENCBS914DZS/


title: TF ChIP-seq from HepG2 (ENCLB162TRS)

description:
https://www.encodeproject.org/experiments/ENCSR580HOI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR580HOI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB162TRS
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting RELA

value: RELA

value: ENCBS064FCG at ENCODE; https://www.encodeproject.org/ENCBS064FCG/


title: TF ChIP-seq from HepG2 (ENCLB206VMS)

description:
https://www.encodeproject.org/experiments/ENCSR398TMP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR398TMP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB206VMS
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting MYNN

value: MYNN

value: ENCBS517EJT at ENCODE; https://www.encodeproject.org/ENCBS517EJT/


title: TF ChIP-seq from HepG2 (ENCLB033TRN)

description:
https://www.encodeproject.org/experiments/ENCSR398TMP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR398TMP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB033TRN
fragmentation methods: sonication (generic)

value: male

value: hepatocellular carcinoma

value: ENCBS027RML at ENCODE; https://www.encodeproject.org/ENCBS027RML/


title: TF ChIP-seq from K562 (ENCLB367TJM)

description:
https://www.encodeproject.org/experiments/ENCSR578KEN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR578KEN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR080NUS
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB367TJM
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting USF2

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS354LQA at ENCODE; https://www.encodeproject.org/ENCBS354LQA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB097VXE)

description:
https://www.encodeproject.org/experiments/ENCSR578KEN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR578KEN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR080NUS
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB097VXE
fragmentation methods: sonication (generic)

value: cell line

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS299PVF at ENCODE; https://www.encodeproject.org/ENCBS299PVF/


title: TF ChIP-seq from HepG2 (ENCLB453TNO)

description:
https://www.encodeproject.org/experiments/ENCSR959COF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR959COF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB453TNO
fragmentation methods: sonication (generic)

value: child

value: 15 year

value: ENCBS897KWX at ENCODE; https://www.encodeproject.org/ENCBS897KWX/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB825DQB)

description:
https://www.encodeproject.org/experiments/ENCSR580HOI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR580HOI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB825DQB
fragmentation methods: sonication (generic)

value: RELA

value: male

value: ENCBS757OQK at ENCODE; https://www.encodeproject.org/ENCBS757OQK/


title: TF ChIP-seq from HepG2 (ENCLB536MAS)

description:
https://www.encodeproject.org/experiments/ENCSR601KKB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR601KKB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB536MAS
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: ENCBS883XVI at ENCODE; https://www.encodeproject.org/ENCBS883XVI/


title: TF ChIP-seq from HepG2 (ENCLB382TEM)

description:
https://www.encodeproject.org/experiments/ENCSR956OSX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR956OSX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB382TEM
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ONECUT1

value: ENCBS005EKG at ENCODE; https://www.encodeproject.org/ENCBS005EKG/


title: TF ChIP-seq from HepG2 (ENCLB320PTH)

description:
https://www.encodeproject.org/experiments/ENCSR956OSX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR956OSX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB320PTH
fragmentation methods: sonication (generic)

value: ENCBS988CVN at ENCODE; https://www.encodeproject.org/ENCBS988CVN/


title: TF ChIP-seq from HepG2 (ENCLB104RBG)

description:
https://www.encodeproject.org/experiments/ENCSR953MMC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR953MMC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB104RBG
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZC3H4

value: ENCBS053VAQ at ENCODE; https://www.encodeproject.org/ENCBS053VAQ/


title: TF ChIP-seq from HepG2 (ENCLB864OLP)

description:
https://www.encodeproject.org/experiments/ENCSR953MMC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR953MMC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB864OLP
fragmentation methods: sonication (generic)

value: ENCBS867GZG at ENCODE; https://www.encodeproject.org/ENCBS867GZG/


title: TF ChIP-seq from HepG2 (ENCLB930PRY)

description:
https://www.encodeproject.org/experiments/ENCSR395MHA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR395MHA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB930PRY
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting BRD4

value: cell line

value: ENCBS500OMK at ENCODE; https://www.encodeproject.org/ENCBS500OMK/


title: TF ChIP-seq from HepG2 (ENCLB213KST)

description:
https://www.encodeproject.org/experiments/ENCSR949OEV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR949OEV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB213KST
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZFY

value: ZFY

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS432POV at ENCODE; https://www.encodeproject.org/ENCBS432POV/


title: TF ChIP-seq from HepG2 (ENCLB250HZU)

description:
https://www.encodeproject.org/experiments/ENCSR395MHA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR395MHA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB250HZU
fragmentation methods: sonication (generic)

value: child

value: 15 year

value: ENCBS395IFL at ENCODE; https://www.encodeproject.org/ENCBS395IFL/


title: TF ChIP-seq from HepG2 (ENCLB751SYT)

description:
https://www.encodeproject.org/experiments/ENCSR565BVI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR565BVI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB751SYT
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting NFAT5

value: male

value: ENCBS589TUN at ENCODE; https://www.encodeproject.org/ENCBS589TUN/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB166XXG)

description:
https://www.encodeproject.org/experiments/ENCSR950FIL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR950FIL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB166XXG
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting HDAC2

value: hepatocellular carcinoma

value: ENCBS547LOH at ENCODE; https://www.encodeproject.org/ENCBS547LOH/


title: TF ChIP-seq from HepG2 (ENCLB230JEN)

description:
https://www.encodeproject.org/experiments/ENCSR565BVI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR565BVI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB230JEN
fragmentation methods: sonication (generic)

value: ENCBS415PXV at ENCODE; https://www.encodeproject.org/ENCBS415PXV/