title: Histone ChIP-seq from middle frontal area 46 (ENCLB966XZW)

description:
https://www.encodeproject.org/experiments/ENCSR206CIN/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (74 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR206CIN
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR698YQL
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB966XZW
size range: 200-600

value: Bradley Bernstein, Broad

value: Rush University


title: Control ChIP-seq from middle frontal area 46 (ENCLB870GZQ)

status: Public on May 23 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR739QEI/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue male adult (87 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR739QEI
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB870GZQ
size range: 200-600

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens male adult (87 years) middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

tag: biosample encode accession

tag: Sex

value: male

tag: dev stage

value: adult

tag: age

value: 87 year

tag: lab

tag: source

tag: link

value: ENCBS552HSQ at ENCODE; https://www.encodeproject.org/ENCBS552HSQ/

value: Derived from ENCODE donor ENCDO203ASI; https://www.encodeproject.org/ENCDO203ASI/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB149FVG)

description:
https://www.encodeproject.org/experiments/ENCSR200JVJ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue male adult (89 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR200JVJ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR557HEX
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB149FVG
size range: 200-600

source_name: Homo sapiens male adult (89 years) middle frontal area 46 tissue with mild cognitive impairment

tag: antibody

value: 89 year

value: ENCBS273TDM at ENCODE; https://www.encodeproject.org/ENCBS273TDM/

value: Derived from ENCODE donor ENCDO697SWU; https://www.encodeproject.org/ENCDO697SWU/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB801BYS)

description:
https://www.encodeproject.org/experiments/ENCSR200JVJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue male adult (89 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR200JVJ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR557HEX
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB801BYS
size range: 200-600


title: TF ChIP-seq from neural crest cell (ENCLB162QFA)

description:
https://www.encodeproject.org/experiments/ENCSR218MVT/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on neural crest cell originated from neural crest cell
experiment encode accession: ENCSR218MVT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR318RRK
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB162QFA
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female embryo (5 days) neural crest in vitro differentiated cells originated from neural crest cell

value: CTCF

value: neural crest cell

value: in vitro differentiated cells

tag: description

value: WA09 derived neural crest cells

value: female

tag: health state

value: healthy

value: embryonic

value: 5 day

value: SESCC

value: ENCBS200JOD at ENCODE; https://www.encodeproject.org/ENCBS200JOD/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB580DJP)

description:
https://www.encodeproject.org/experiments/ENCSR198MJK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue male adult (89 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR198MJK
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR557HEX
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB580DJP
size range: 200-600

value: middle frontal area 46

value: tissue

value: male

value: adult

value: Bradley Bernstein, Broad

value: Rush University


title: Control ChIP-seq from A549 (ENCLB050RVS)

description:
https://www.encodeproject.org/experiments/ENCSR212FST/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 15 mins.
experiment encode accession: ENCSR212FST
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB050RVS
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 cell line

tag: line

value: cell line

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: ENCBS383LCQ at ENCODE; https://www.encodeproject.org/ENCBS383LCQ/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Control ChIP-seq from A549 (ENCLB149SIF)

description:
https://www.encodeproject.org/experiments/ENCSR212FST/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 15 mins.
experiment encode accession: ENCSR212FST
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB149SIF
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS445QON at ENCODE; https://www.encodeproject.org/ENCBS445QON/


title: TF ChIP-seq from nephron (ENCLB859KFG)

description:
https://www.encodeproject.org/experiments/ENCSR194WQV/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on nephron female embryo (5 days)
experiment encode accession: ENCSR194WQV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR959CIX
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB859KFG
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female embryo (5 days) nephron organoid

value: CTCF

value: nephron

value: organoid

value: female

value: healthy

value: embryonic

value: 5 day

value: Joseph Bonventre

value: ENCBS047TRT at ENCODE; https://www.encodeproject.org/ENCBS047TRT/


title: TF ChIP-seq from lower lobe of left lung (ENCLB467ERY)

description:
https://www.encodeproject.org/experiments/ENCSR195POA/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on lower lobe of left lung male adult (60 years)
experiment encode accession: ENCSR195POA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR089ZLR
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB467ERY
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens male adult (60 years) lower lobe of left lung tissue, preserved by flash-freezing

value: lower lobe of left lung

value: tissue

value: male

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: adult

value: 60 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS105KGA at ENCODE; https://www.encodeproject.org/ENCBS105KGA/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: Control ChIP-seq from A549 (ENCLB935UZW)

description:
https://www.encodeproject.org/experiments/ENCSR204GMP/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 mins.
experiment encode accession: ENCSR204GMP
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB935UZW
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: cell line

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: ENCBS098XEU at ENCODE; https://www.encodeproject.org/ENCBS098XEU/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB190TRA)

description:
https://www.encodeproject.org/experiments/ENCSR198MJK/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue male adult (89 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR198MJK
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR557HEX
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB190TRA
size range: 200-600

value: middle frontal area 46

value: 89 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS273TDM at ENCODE; https://www.encodeproject.org/ENCBS273TDM/

value: Derived from ENCODE donor ENCDO697SWU; https://www.encodeproject.org/ENCDO697SWU/


title: Control ChIP-seq from middle frontal area 46 (ENCLB445WLQ)

description:
https://www.encodeproject.org/experiments/ENCSR714GKF/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue male adult (71 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR714GKF
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB445WLQ
size range: 200-600

source_name: Homo sapiens male adult (71 years) middle frontal area 46 tissue

value: tissue

value: male

value: adult

value: 71 year

value: ENCBS552CLR at ENCODE; https://www.encodeproject.org/ENCBS552CLR/

value: Derived from ENCODE donor ENCDO570AKP; https://www.encodeproject.org/ENCDO570AKP/


title: TF ChIP-seq from nephron (ENCLB311OMC)

description:
https://www.encodeproject.org/experiments/ENCSR194WQV/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on nephron female embryo (5 days)
experiment encode accession: ENCSR194WQV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR959CIX
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB311OMC
fragmentation methods: sonication (generic)
size range: 200-600

value: CTCF

value: nephron

value: organoid

value: female

value: healthy

value: embryonic

value: 5 day

value: Joseph Bonventre

value: ENCBS047TRT at ENCODE; https://www.encodeproject.org/ENCBS047TRT/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Control ChIP-seq from middle frontal area 46 (ENCLB642MFQ)

description:
https://www.encodeproject.org/experiments/ENCSR714GKF/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue male adult (71 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR714GKF
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB642MFQ
size range: 200-600

value: middle frontal area 46

value: Bradley Bernstein, Broad

value: Rush University


title: Histone ChIP-seq from pancreas (ENCLB012VHF)

description:
https://www.encodeproject.org/experiments/ENCSR713YDD/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on pancreas tissue female adult (59 years)
experiment encode accession: ENCSR713YDD
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR490NCK
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB012VHF
size range: 200-600

source_name: Homo sapiens female adult (59 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: adult

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS483KZB at ENCODE; https://www.encodeproject.org/ENCBS483KZB/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: TF ChIP-seq from lower lobe of left lung (ENCLB852KTI)

description:
https://www.encodeproject.org/experiments/ENCSR195POA/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on lower lobe of left lung male adult (60 years)
experiment encode accession: ENCSR195POA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR089ZLR
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB852KTI
fragmentation methods: sonication (generic)
size range: 200-600

value: CTCF

value: lower lobe of left lung

value: male

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: 60 year

value: ENCBS105KGA at ENCODE; https://www.encodeproject.org/ENCBS105KGA/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: Control ChIP-seq from A549 (ENCLB088CYA)

description:
https://www.encodeproject.org/experiments/ENCSR204GMP/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 mins.
experiment encode accession: ENCSR204GMP
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB088CYA
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: cell line

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: ENCBS144OZN at ENCODE; https://www.encodeproject.org/ENCBS144OZN/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Control ChIP-seq from A549 (ENCLB310RZS)

description:
https://www.encodeproject.org/experiments/ENCSR204GMP/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 mins.
experiment encode accession: ENCSR204GMP
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB310RZS
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ENCBS262GBB at ENCODE; https://www.encodeproject.org/ENCBS262GBB/


title: TF ChIP-seq from chondrocyte (ENCLB583DVZ)

description:
https://www.encodeproject.org/experiments/ENCSR190BZA/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on chondrocyte originated from chondrocyte
experiment encode accession: ENCSR190BZA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR004UBJ
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB583DVZ
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female embryo (5 days) chondrocyte in vitro differentiated cells originated from chondrocyte

value: chondrocyte

value: in vitro differentiated cells

value: WA09 derived chondrocytes

value: female

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein, Broad

value: SESCC

value: ENCBS497BNU at ENCODE; https://www.encodeproject.org/ENCBS497BNU/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Control ChIP-seq from WERI-Rb-1 (ENCLB445RET)

description:
https://www.encodeproject.org/experiments/ENCSR723FET/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human WERI-Rb-1
experiment encode accession: ENCSR723FET
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB445RET
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens WERI-Rb-1 cell line

value: cell line

value: child

value: 1 year

value: Michael Snyder, Stanford

value: retinoblastoma

value: ENCBS561GQJ at ENCODE; https://www.encodeproject.org/ENCBS561GQJ/

value: Derived from ENCODE donor ENCDO000ADT; https://www.encodeproject.org/ENCDO000ADT/


title: TF ChIP-seq from chondrocyte (ENCLB488BSX)

description:
https://www.encodeproject.org/experiments/ENCSR190BZA/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on chondrocyte originated from chondrocyte
experiment encode accession: ENCSR190BZA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR004UBJ
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB488BSX
fragmentation methods: sonication (generic)
size range: 200-600

value: CTCF

value: chondrocyte

value: in vitro differentiated cells


title: TF ChIP-seq from chondrocyte (ENCLB984XHU)

description:
https://www.encodeproject.org/experiments/ENCSR190BZA/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on chondrocyte originated from chondrocyte
experiment encode accession: ENCSR190BZA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR004UBJ
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB984XHU
fragmentation methods: sonication (generic)
size range: 200-600

value: WA09 derived chondrocytes

value: female

value: healthy

value: ENCBS434TAN at ENCODE; https://www.encodeproject.org/ENCBS434TAN/


title: Histone ChIP-seq from pancreas (ENCLB577XAV)

description:
https://www.encodeproject.org/experiments/ENCSR703XCI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on pancreas tissue female adult (61 years)
experiment encode accession: ENCSR703XCI
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR130HAG
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB577XAV
size range: 200-600

source_name: Homo sapiens female adult (61 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: tissue

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: adult

value: 61 year

value: Yiing Lin, MD, PhD

value: ENCBS297KRV at ENCODE; https://www.encodeproject.org/ENCBS297KRV/

value: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/


title: Control ChIP-seq from SK-N-SH (ENCLB255PPZ)

description:
https://www.encodeproject.org/experiments/ENCSR197JBL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR197JBL
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB255PPZ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting SNAI2 treated with 6uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: cell line

value: child

value: 4 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: Metastatic neuroblastoma from bone marrow

tag: treatments

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS078III at ENCODE; https://www.encodeproject.org/ENCBS078III/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: Histone ChIP-seq from pancreas (ENCLB546DEJ)

description:
https://www.encodeproject.org/experiments/ENCSR703XCI/
***************
biological replicate number: 1
technical replicate number: 3
description: H3K9me3 ChIP-seq on pancreas tissue female adult (61 years)
experiment encode accession: ENCSR703XCI
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR130HAG
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB546DEJ
size range: 200-600

value: pancreas

value: tissue

value: female


title: Control ChIP-seq from A549 (ENCLB095DMZ)

description:
https://www.encodeproject.org/experiments/ENCSR212FST/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 15 mins.
experiment encode accession: ENCSR212FST
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB095DMZ
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: adult

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: ENCBS000CWG at ENCODE; https://www.encodeproject.org/ENCBS000CWG/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Histone ChIP-seq from pancreas (ENCLB081GAS)

description:
https://www.encodeproject.org/experiments/ENCSR703KLE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on pancreas tissue female adult (41 years)
experiment encode accession: ENCSR703KLE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR462ZQL
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB081GAS
size range: 200-600

source_name: Homo sapiens female adult (41 years) pancreas tissue, preserved by flash-freezing

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Yiing Lin, MD, PhD

value: ENCBS212NYF at ENCODE; https://www.encodeproject.org/ENCBS212NYF/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Histone ChIP-seq from pancreas (ENCLB907XYR)

description:
https://www.encodeproject.org/experiments/ENCSR703XCI/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 ChIP-seq on pancreas tissue female adult (61 years)
experiment encode accession: ENCSR703XCI
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR130HAG
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB907XYR
size range: 200-600

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: 61 year

value: Michael Snyder, Stanford

value: ENCBS297KRV at ENCODE; https://www.encodeproject.org/ENCBS297KRV/

value: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/


title: Histone ChIP-seq from pancreas (ENCLB012BEH)

description:
https://www.encodeproject.org/experiments/ENCSR703KLE/
***************
biological replicate number: 1
technical replicate number: 3
description: H3K9me3 ChIP-seq on pancreas tissue female adult (41 years)
experiment encode accession: ENCSR703KLE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR462ZQL
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB012BEH
size range: 200-600

value: pancreas

value: tissue

value: female


title: Histone ChIP-seq from pancreas (ENCLB125OGC)

description:
https://www.encodeproject.org/experiments/ENCSR703KLE/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 ChIP-seq on pancreas tissue female adult (41 years)
experiment encode accession: ENCSR703KLE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR462ZQL
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB125OGC
size range: 200-600

value: adult


title: Histone ChIP-seq from pancreas (ENCLB360YDT)

description:
https://www.encodeproject.org/experiments/ENCSR179GVP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on pancreas tissue female adult (59 years)
experiment encode accession: ENCSR179GVP
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR490NCK
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB360YDT
size range: 200-600

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: ENCBS483KZB at ENCODE; https://www.encodeproject.org/ENCBS483KZB/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Histone ChIP-seq from pancreas (ENCLB148VHV)

description:
https://www.encodeproject.org/experiments/ENCSR179GVP/
***************
biological replicate number: 1
technical replicate number: 3
description: H3K27me3 ChIP-seq on pancreas tissue female adult (59 years)
experiment encode accession: ENCSR179GVP
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR490NCK
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB148VHV
size range: 200-600


title: Histone ChIP-seq from middle frontal area 46 (ENCLB236AWQ)

description:
https://www.encodeproject.org/experiments/ENCSR675VCH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (89 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR675VCH
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR151NEZ
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB236AWQ
size range: 200-600

source_name: Homo sapiens female adult (89 years) middle frontal area 46 tissue

value: middle frontal area 46

value: 89 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS738TIQ at ENCODE; https://www.encodeproject.org/ENCBS738TIQ/

value: Derived from ENCODE donor ENCDO707TUE; https://www.encodeproject.org/ENCDO707TUE/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB594UNR)

description:
https://www.encodeproject.org/experiments/ENCSR675VCH/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (89 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR675VCH
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR151NEZ
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB594UNR
size range: 200-600


title: TF ChIP-seq from mesothelial cell of epicardium (ENCLB514ZVX)

description:
https://www.encodeproject.org/experiments/ENCSR647SQF/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on epicardium (mesothelium) cells originated from epicardium (mesothelium) cells
experiment encode accession: ENCSR647SQF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR333DCK
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB514ZVX
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female embryo (5 days) mesothelial of epicardium in vitro differentiated cells originated from mesothelial cell of epicardium

extract_protocol: not provided

value: CTCF

value: mesothelial cell of epicardium

value: in vitro differentiated cells

value: WA09 derived epicardium (mesothelium)

value: healthy

value: embryonic

value: 5 day

value: SESCC

value: ENCBS924VAR at ENCODE; https://www.encodeproject.org/ENCBS924VAR/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB572CPQ)

description:
https://www.encodeproject.org/experiments/ENCSR668DIS/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR668DIS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR638CSE
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB572CPQ
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue with mild cognitive impairment

value: tissue

value: female

value: adult

value: 90 or above year

value: ENCBS033DPJ at ENCODE; https://www.encodeproject.org/ENCBS033DPJ/

value: Derived from ENCODE donor ENCDO153NUY; https://www.encodeproject.org/ENCDO153NUY/


title: TF ChIP-seq from mesothelial cell of epicardium (ENCLB869ZLL)

description:
https://www.encodeproject.org/experiments/ENCSR647SQF/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on epicardium (mesothelium) cells originated from epicardium (mesothelium) cells
experiment encode accession: ENCSR647SQF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR333DCK
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB869ZLL
fragmentation methods: sonication (generic)
size range: 200-600

value: Bradley Bernstein, Broad


title: Histone ChIP-seq from middle frontal area 46 (ENCLB735ZGX)

description:
https://www.encodeproject.org/experiments/ENCSR668DIS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR668DIS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR638CSE
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB735ZGX
size range: 200-600

value: middle frontal area 46

value: Rush University


title: Control ChIP-seq from SK-N-SH (ENCLB563XZP)

description:
https://www.encodeproject.org/experiments/ENCSR684GHA/
***************
biological replicate number: 1
technical replicate number: 1
description: SK-N-SH immortalized cell line (treated with 6 uM all-trans-retinoic acid for 48 hours) stably expressing C-terminal eGFP-TOX2 fusion protein.
experiment encode accession: ENCSR684GHA
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB563XZP
size range: 450-650

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting TOX2 treated with 6uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: cell line

value: SK-N-SH cell line (treated with 6uM all-trans-retinoic acid for 48 hours) stably expressing a C-terminal LAP-tag containing eGFP, fused to TOX2.

value: child

value: 4 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS805KSW at ENCODE; https://www.encodeproject.org/ENCBS805KSW/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB124PAX)

description:
https://www.encodeproject.org/experiments/ENCSR166WJU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (78 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR166WJU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR518COE
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB124PAX
size range: 200-600

source_name: Homo sapiens female adult (78 years) middle frontal area 46 tissue

value: tissue

value: female

value: adult

value: 78 year

value: ENCBS882DOK at ENCODE; https://www.encodeproject.org/ENCBS882DOK/

value: Derived from ENCODE donor ENCDO236YSH; https://www.encodeproject.org/ENCDO236YSH/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB691ABU)

description:
https://www.encodeproject.org/experiments/ENCSR166WJU/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (78 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR166WJU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR518COE
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB691ABU
size range: 200-600

value: middle frontal area 46

value: Bradley Bernstein, Broad

value: Rush University


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB322NGO)

description:
https://www.encodeproject.org/experiments/ENCSR165CDY/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K27ac ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR165CDY
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB322NGO
size range: 200-600

source_name: Homo sapiens male adult (60 years) left ventricle myocardium inferior tissue

value: left ventricle myocardium inferior

value: male

value: 60 year

value: Shin Lin

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: ENCBS672IKS at ENCODE; https://www.encodeproject.org/ENCBS672IKS/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: TF ChIP-seq from chondrocyte (ENCLB004NHE)

description:
https://www.encodeproject.org/experiments/ENCSR190BZA/
***************
biological replicate number: 2
technical replicate number: 2
description: CTCF ChIP-seq on chondrocyte originated from chondrocyte
experiment encode accession: ENCSR190BZA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR004UBJ
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB004NHE
fragmentation methods: sonication (generic)
size range: 200-600

value: CTCF

value: chondrocyte

value: in vitro differentiated cells

value: WA09 derived chondrocytes

value: healthy

value: embryonic

value: 5 day

value: SESCC

value: ENCBS434TAN at ENCODE; https://www.encodeproject.org/ENCBS434TAN/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB795PYB)

description:
https://www.encodeproject.org/experiments/ENCSR641QPH/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue male adult (86 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR641QPH
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR347KLR
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB795PYB
size range: 200-600

source_name: Homo sapiens male adult (86 years) middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: adult

value: 86 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS940YCN at ENCODE; https://www.encodeproject.org/ENCBS940YCN/

value: Derived from ENCODE donor ENCDO666UNK; https://www.encodeproject.org/ENCDO666UNK/


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB548OWU)

description:
https://www.encodeproject.org/experiments/ENCSR165CDY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR165CDY
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB548OWU
size range: 200-600

value: left ventricle myocardium inferior

value: male

value: 60 year

value: Shin Lin

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: ENCBS267RXN at ENCODE; https://www.encodeproject.org/ENCBS267RXN/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB107WJF)

description:
https://www.encodeproject.org/experiments/ENCSR165CDY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR165CDY
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB107WJF
size range: 200-600


title: Histone ChIP-seq from middle frontal area 46 (ENCLB883RYT)

description:
https://www.encodeproject.org/experiments/ENCSR641QPH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue male adult (86 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR641QPH
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR347KLR
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB883RYT
size range: 200-600


title: Histone ChIP-seq from pancreas (ENCLB339HCH)

description:
https://www.encodeproject.org/experiments/ENCSR637NGB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on pancreas tissue female adult (59 years)
experiment encode accession: ENCSR637NGB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR490NCK
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB339HCH
size range: 200-600

value: pancreas

value: female

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS483KZB at ENCODE; https://www.encodeproject.org/ENCBS483KZB/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Control ChIP-seq from middle frontal area 46 (ENCLB748MVP)

description:
https://www.encodeproject.org/experiments/ENCSR638CSE/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR638CSE
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB748MVP
size range: 200-600

value: middle frontal area 46

value: tissue

value: adult

value: 90 or above year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS033DPJ at ENCODE; https://www.encodeproject.org/ENCBS033DPJ/

value: Derived from ENCODE donor ENCDO153NUY; https://www.encodeproject.org/ENCDO153NUY/


title: Histone ChIP-seq from pancreas (ENCLB903UKP)

description:
https://www.encodeproject.org/experiments/ENCSR179GVP/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on pancreas tissue female adult (59 years)
experiment encode accession: ENCSR179GVP
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR490NCK
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB903UKP
size range: 200-600


title: Control ChIP-seq from foreskin keratinocyte (ENCLB027EQY)

description:
https://www.encodeproject.org/experiments/ENCSR631ESZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq control (input DNA) on primary keratinocytes in day 0 of differentiation
experiment encode accession: ENCSR631ESZ
assay title: Control ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB027EQY

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell

value: foreskin keratinocyte

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 0.0

value: male

value: newborn

value: 2-4 day

value: Paul Khavari, Stanford

value: Paul Khavari

value: Healthy

tag: passage number

value: ENCBS538XZS at ENCODE; https://www.encodeproject.org/ENCBS538XZS/

value: Derived from ENCODE donor ENCDO005EGE; https://www.encodeproject.org/ENCDO005EGE/


title: TF ChIP-seq from HFFc6 (ENCLB760DAE)

description:
https://www.encodeproject.org/experiments/ENCSR163ULN/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on HFFc6
experiment encode accession: ENCSR163ULN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR542JNY
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB760DAE
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens HFFc6 cell line, preserved by flash-freezing

value: CTCF

value: cell line

value: Clonal line 6 derived from hTert immortalized HFF parental line

value: normal

value: 0 year

value: Job Dekker, UMass

value: Job Dekker

value: ENCBS502RLX at ENCODE; https://www.encodeproject.org/ENCBS502RLX/

value: Derived from ENCODE donor ENCDO737WWC; https://www.encodeproject.org/ENCDO737WWC/


title: Histone ChIP-seq from pancreas (ENCLB163OFU)

description:
https://www.encodeproject.org/experiments/ENCSR637NGB/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 ChIP-seq on pancreas tissue female adult (59 years)
experiment encode accession: ENCSR637NGB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR490NCK
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB163OFU
size range: 200-600

value: pancreas

value: tissue

value: female

value: DM:yes; HTN:yes; CAD:no

value: adult

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS483KZB at ENCODE; https://www.encodeproject.org/ENCBS483KZB/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Control ChIP-seq from middle frontal area 46 (ENCLB053DQY)

description:
https://www.encodeproject.org/experiments/ENCSR698YQL/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (74 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR698YQL
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB053DQY
size range: 200-600

source_name: Homo sapiens female adult (74 years) middle frontal area 46 tissue with Alzheimer's disease

value: middle frontal area 46

value: 74 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS242LMI at ENCODE; https://www.encodeproject.org/ENCBS242LMI/

value: Derived from ENCODE donor ENCDO907CMO; https://www.encodeproject.org/ENCDO907CMO/


title: Control ChIP-seq from middle frontal area 46 (ENCLB649XZG)

description:
https://www.encodeproject.org/experiments/ENCSR698YQL/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (74 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR698YQL
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB649XZG
size range: 200-600


title: TF ChIP-seq from HFFc6 (ENCLB900KJE)

description:
https://www.encodeproject.org/experiments/ENCSR163ULN/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on HFFc6
experiment encode accession: ENCSR163ULN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR542JNY
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB900KJE
fragmentation methods: sonication (generic)
size range: 200-600

value: CTCF

value: cell line

value: Clonal line 6 derived from hTert immortalized HFF parental line

value: male

value: normal

value: newborn

value: 0 year

value: Job Dekker, UMass

value: Job Dekker

value: ENCBS055WKO at ENCODE; https://www.encodeproject.org/ENCBS055WKO/

value: Derived from ENCODE donor ENCDO737WWC; https://www.encodeproject.org/ENCDO737WWC/


title: Control ChIP-seq from foreskin keratinocyte (ENCLB713OIX)

description:
https://www.encodeproject.org/experiments/ENCSR631ESZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq control (input DNA) on primary keratinocytes in day 0 of differentiation
experiment encode accession: ENCSR631ESZ
assay title: Control ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB713OIX

value: foreskin keratinocyte

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, grown in 2D culture, day 0.0

value: 2-4 day

value: Paul Khavari, Stanford

value: Paul Khavari

value: Healthy

value: ENCBS666IIR at ENCODE; https://www.encodeproject.org/ENCBS666IIR/

value: Derived from ENCODE donor ENCDO615NVN; https://www.encodeproject.org/ENCDO615NVN/


title: Histone ChIP-seq from left lung (ENCLB437LAA)

description:
https://www.encodeproject.org/experiments/ENCSR155YWB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on left lung tissue male adult (40 years)
experiment encode accession: ENCSR155YWB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR936CZX
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB437LAA
size range: 200-600

source_name: Homo sapiens male adult (40 years) left lung tissue, preserved by flash-freezing

value: left lung

value: tissue

value: male

value: DM:no; HTN:yes; CAD:no

value: adult

value: 40 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS628ZUJ at ENCODE; https://www.encodeproject.org/ENCBS628ZUJ/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: TF ChIP-seq from HFFc6 (ENCLB802TBU)

description:
https://www.encodeproject.org/experiments/ENCSR163ULN/
***************
biological replicate number: 2
technical replicate number: 2
description: CTCF ChIP-seq on HFFc6
experiment encode accession: ENCSR163ULN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR542JNY
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB802TBU
fragmentation methods: sonication (generic)
size range: 200-600

value: CTCF

value: cell line

value: Clonal line 6 derived from hTert immortalized HFF parental line

value: normal

value: newborn

value: 0 year

value: Job Dekker, UMass

value: Job Dekker

value: ENCBS502RLX at ENCODE; https://www.encodeproject.org/ENCBS502RLX/

value: Derived from ENCODE donor ENCDO737WWC; https://www.encodeproject.org/ENCDO737WWC/


title: TF ChIP-seq from HFFc6 (ENCLB116TZY)

description:
https://www.encodeproject.org/experiments/ENCSR163ULN/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on HFFc6
experiment encode accession: ENCSR163ULN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR542JNY
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB116TZY
fragmentation methods: sonication (generic)
size range: 200-600

value: male

value: ENCBS055WKO at ENCODE; https://www.encodeproject.org/ENCBS055WKO/


title: Histone ChIP-seq from left lung (ENCLB471HTK)

description:
https://www.encodeproject.org/experiments/ENCSR155YWB/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on left lung tissue male adult (40 years)
experiment encode accession: ENCSR155YWB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR936CZX
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB471HTK
size range: 200-600

value: left lung

value: tissue

value: DM:no; HTN:yes; CAD:no

value: adult

value: 40 year


title: Control ChIP-seq from foreskin keratinocyte (ENCLB429BHX)

description:
https://www.encodeproject.org/experiments/ENCSR113CMI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq control (input DNA) on primary keratinocytes in day 3 of differentiation
experiment encode accession: ENCSR113CMI
assay title: Control ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB429BHX

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 days

value: foreskin keratinocyte

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 3.0

value: 2-4 day

value: Paul Khavari, Stanford

value: Paul Khavari

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:2.5; duration_units:day;

value: Healthy

value: ENCBS079LRU at ENCODE; https://www.encodeproject.org/ENCBS079LRU/

value: Derived from ENCODE donor ENCDO615NVN; https://www.encodeproject.org/ENCDO615NVN/


title: Control ChIP-seq from foreskin keratinocyte (ENCLB713KCH)

description:
https://www.encodeproject.org/experiments/ENCSR113CMI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq control (input DNA) on primary keratinocytes in day 3 of differentiation
experiment encode accession: ENCSR113CMI
assay title: Control ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB713KCH

value: male

value: newborn

value: ENCBS299ONK at ENCODE; https://www.encodeproject.org/ENCBS299ONK/

value: Derived from ENCODE donor ENCDO005EGE; https://www.encodeproject.org/ENCDO005EGE/


title: Control ChIP-seq from middle frontal area 46 (ENCLB696CKA)

description:
https://www.encodeproject.org/experiments/ENCSR151NEZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (89 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR151NEZ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB696CKA
size range: 200-600

value: middle frontal area 46

value: tissue

value: female

value: 89 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS738TIQ at ENCODE; https://www.encodeproject.org/ENCBS738TIQ/

value: Derived from ENCODE donor ENCDO707TUE; https://www.encodeproject.org/ENCDO707TUE/


title: Control ChIP-seq from middle frontal area 46 (ENCLB523RXZ)

description:
https://www.encodeproject.org/experiments/ENCSR151NEZ/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (89 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR151NEZ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB523RXZ
size range: 200-600

value: adult


title: Histone ChIP-seq from pancreas (ENCLB436MXX)

description:
https://www.encodeproject.org/experiments/ENCSR713YDD/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on pancreas tissue female adult (59 years)
experiment encode accession: ENCSR713YDD
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR490NCK
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB436MXX
size range: 200-600

source_name: Homo sapiens female adult (59 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS483KZB at ENCODE; https://www.encodeproject.org/ENCBS483KZB/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Control ChIP-seq from middle frontal area 46 (ENCLB010ORO)

description:
https://www.encodeproject.org/experiments/ENCSR638CSE/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR638CSE
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB010ORO
size range: 200-600

value: 90 or above year

value: ENCBS033DPJ at ENCODE; https://www.encodeproject.org/ENCBS033DPJ/

value: Derived from ENCODE donor ENCDO153NUY; https://www.encodeproject.org/ENCDO153NUY/


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB819PSC)

description:
https://www.encodeproject.org/experiments/ENCSR165CDY/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR165CDY
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB819PSC
size range: 200-600

value: left ventricle myocardium inferior

value: tissue

value: male

value: 60 year

value: Shin Lin

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: ENCBS672IKS at ENCODE; https://www.encodeproject.org/ENCBS672IKS/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB363UMI)

description:
https://www.encodeproject.org/experiments/ENCSR147VUC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR147VUC
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR153LYY
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB363UMI
size range: 200-600

value: middle frontal area 46

value: female

value: adult

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS835TES at ENCODE; https://www.encodeproject.org/ENCBS835TES/

value: Derived from ENCODE donor ENCDO672KST; https://www.encodeproject.org/ENCDO672KST/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB760BEH)

description:
https://www.encodeproject.org/experiments/ENCSR141EDV/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on dorsolateral prefrontal cortex tissue male adult (87 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR141EDV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR739QEI
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB760BEH
size range: 200-600

source_name: Homo sapiens male adult (87 years) middle frontal area 46 tissue

value: 87 year

value: ENCBS552HSQ at ENCODE; https://www.encodeproject.org/ENCBS552HSQ/

value: Derived from ENCODE donor ENCDO203ASI; https://www.encodeproject.org/ENCDO203ASI/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB679RYC)

description:
https://www.encodeproject.org/experiments/ENCSR147VUC/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR147VUC
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR153LYY
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB679RYC
size range: 200-600

value: tissue

value: 90 or above year


title: Control ChIP-seq from K562 (ENCLB727WTX)

description:
https://www.encodeproject.org/experiments/ENCSR150QOJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR150QOJ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB727WTX
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF165

value: cell line

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: chronic myelogenous leukemia (CML)

value: ENCBS846SVZ at ENCODE; https://www.encodeproject.org/ENCBS846SVZ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from lower lobe of left lung (ENCLB517WBJ)

description:
https://www.encodeproject.org/experiments/ENCSR133AFF/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on lower lobe of left lung female adult (59 years)
experiment encode accession: ENCSR133AFF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR846VGG
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB517WBJ
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (59 years) lower lobe of left lung tissue, preserved by flash-freezing

value: CTCF

value: lower lobe of left lung

value: female

value: DM:yes; HTN:yes; CAD:no

value: adult

value: 59 year

value: Yiing Lin, MD, PhD

value: ENCBS493HET at ENCODE; https://www.encodeproject.org/ENCBS493HET/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB237LCG)

description:
https://www.encodeproject.org/experiments/ENCSR141EDV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on dorsolateral prefrontal cortex tissue male adult (87 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR141EDV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR739QEI
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB237LCG
size range: 200-600

value: middle frontal area 46

value: tissue

value: male

value: 87 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS552HSQ at ENCODE; https://www.encodeproject.org/ENCBS552HSQ/

value: Derived from ENCODE donor ENCDO203ASI; https://www.encodeproject.org/ENCDO203ASI/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB828FXX)

description:
https://www.encodeproject.org/experiments/ENCSR131MFE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (86 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR131MFE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR822YWX
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB828FXX
size range: 200-600

source_name: Homo sapiens female adult (86 years) middle frontal area 46 tissue with Cognitive impairment

value: 86 year

value: ENCBS821RYQ at ENCODE; https://www.encodeproject.org/ENCBS821RYQ/

value: Derived from ENCODE donor ENCDO845GYA; https://www.encodeproject.org/ENCDO845GYA/


title: TF ChIP-seq from pancreas (ENCLB236JMN)

description:
https://www.encodeproject.org/experiments/ENCSR113COJ/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on pancreas female adult (59 years)
experiment encode accession: ENCSR113COJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR490NCK
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB236JMN
fragmentation methods: sonication (generic)
size range: 200-600

value: CTCF

value: pancreas

value: female

value: DM:yes; HTN:yes; CAD:no

value: Michael Snyder, Stanford

value: ENCBS483KZB at ENCODE; https://www.encodeproject.org/ENCBS483KZB/


title: Control ChIP-seq from middle frontal area 46 (ENCLB089ZQO)

description:
https://www.encodeproject.org/experiments/ENCSR096QCF/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR096QCF
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB089ZQO
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue with Cognitive impairment

value: middle frontal area 46

value: adult

value: 90 or above year

value: ENCBS736CMF at ENCODE; https://www.encodeproject.org/ENCBS736CMF/

value: Derived from ENCODE donor ENCDO359XWR; https://www.encodeproject.org/ENCDO359XWR/


title: Control ChIP-seq from SK-N-SH (ENCLB695BHO)

description:
https://www.encodeproject.org/experiments/ENCSR086GBI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR086GBI
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-10-16
lab: Michael Snyder, Stanford
library encode accession: ENCLB695BHO
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line treated with 6uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: cell line

value: child

value: 4 year

value: Michael Snyder

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS328JKI at ENCODE; https://www.encodeproject.org/ENCBS328JKI/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: Control ChIP-seq from middle frontal area 46 (ENCLB591HFS)

description:
https://www.encodeproject.org/experiments/ENCSR153LYY/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR153LYY
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB591HFS
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue with mild cognitive impairment

value: tissue

value: female

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS835TES at ENCODE; https://www.encodeproject.org/ENCBS835TES/

value: Derived from ENCODE donor ENCDO672KST; https://www.encodeproject.org/ENCDO672KST/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB607FNG)

description:
https://www.encodeproject.org/experiments/ENCSR131MFE/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (86 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR131MFE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR822YWX
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB607FNG
size range: 200-600

value: middle frontal area 46

value: adult

value: 86 year

value: ENCBS821RYQ at ENCODE; https://www.encodeproject.org/ENCBS821RYQ/

value: Derived from ENCODE donor ENCDO845GYA; https://www.encodeproject.org/ENCDO845GYA/


title: Control ChIP-seq from middle frontal area 46 (ENCLB982HKZ)

description:
https://www.encodeproject.org/experiments/ENCSR096QCF/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR096QCF
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB982HKZ
size range: 200-600

value: 90 or above year

value: ENCBS736CMF at ENCODE; https://www.encodeproject.org/ENCBS736CMF/

value: Derived from ENCODE donor ENCDO359XWR; https://www.encodeproject.org/ENCDO359XWR/


title: Control ChIP-seq from A549 (ENCLB776CVT)

description:
https://www.encodeproject.org/experiments/ENCSR085WWL/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 mins.
experiment encode accession: ENCSR085WWL
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB776CVT
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 cell line

value: cell line

value: male

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: ENCBS895JFB at ENCODE; https://www.encodeproject.org/ENCBS895JFB/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from pancreas (ENCLB640FJA)

description:
https://www.encodeproject.org/experiments/ENCSR113COJ/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on pancreas female adult (59 years)
experiment encode accession: ENCSR113COJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR490NCK
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB640FJA
fragmentation methods: sonication (generic)
size range: 200-600

value: CTCF

value: pancreas

value: tissue

value: female

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS483KZB at ENCODE; https://www.encodeproject.org/ENCBS483KZB/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB059DOM)

description:
https://www.encodeproject.org/experiments/ENCSR622QCU/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (89 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR622QCU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR151NEZ
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB059DOM
size range: 200-600

source_name: Homo sapiens female adult (89 years) middle frontal area 46 tissue

value: middle frontal area 46

value: adult

value: 89 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS738TIQ at ENCODE; https://www.encodeproject.org/ENCBS738TIQ/

value: Derived from ENCODE donor ENCDO707TUE; https://www.encodeproject.org/ENCDO707TUE/


title: Control ChIP-seq from middle frontal area 46 (ENCLB129PSN)

description:
https://www.encodeproject.org/experiments/ENCSR153LYY/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR153LYY
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB129PSN
size range: 200-600

value: 90 or above year

value: ENCBS835TES at ENCODE; https://www.encodeproject.org/ENCBS835TES/

value: Derived from ENCODE donor ENCDO672KST; https://www.encodeproject.org/ENCDO672KST/


title: Control ChIP-seq from A549 (ENCLB844GCM)

description:
https://www.encodeproject.org/experiments/ENCSR085WWL/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 mins.
experiment encode accession: ENCSR085WWL
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB844GCM
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: cell line

value: male

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: ENCBS665QBD at ENCODE; https://www.encodeproject.org/ENCBS665QBD/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB018XJL)

description:
https://www.encodeproject.org/experiments/ENCSR622QCU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (89 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR622QCU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR151NEZ
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB018XJL
size range: 200-600

value: middle frontal area 46

value: tissue

value: female


title: Control ChIP-seq from SK-N-SH (ENCLB865RGK)

description:
https://www.encodeproject.org/experiments/ENCSR072QAK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR072QAK
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-10-16
lab: Michael Snyder, Stanford
library encode accession: ENCLB865RGK
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: SK-N-SH

value: child

value: 4 year

value: Michael Snyder, Stanford

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS992XXY at ENCODE; https://www.encodeproject.org/ENCBS992XXY/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB191FEI)

description:
https://www.encodeproject.org/experiments/ENCSR095NSV/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (86 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR095NSV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR822YWX
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB191FEI
size range: 200-600

value: adult

value: 86 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS821RYQ at ENCODE; https://www.encodeproject.org/ENCBS821RYQ/

value: Derived from ENCODE donor ENCDO845GYA; https://www.encodeproject.org/ENCDO845GYA/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB744SSL)

description:
https://www.encodeproject.org/experiments/ENCSR095NSV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (86 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR095NSV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR822YWX
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB744SSL
size range: 200-600

value: middle frontal area 46


title: Histone ChIP-seq from middle frontal area 46 (ENCLB359NJC)

description:
https://www.encodeproject.org/experiments/ENCSR092IWZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (83 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR092IWZ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR799VTP
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB359NJC
size range: 200-600

source_name: Homo sapiens female adult (83 years) middle frontal area 46 tissue with mild cognitive impairment

value: tissue

value: 83 year

value: ENCBS104CPK at ENCODE; https://www.encodeproject.org/ENCBS104CPK/

value: Derived from ENCODE donor ENCDO832DBZ; https://www.encodeproject.org/ENCDO832DBZ/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB949WCI)

description:
https://www.encodeproject.org/experiments/ENCSR092IWZ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (83 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR092IWZ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR799VTP
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB949WCI
size range: 200-600

value: female


title: TF ChIP-seq from lower lobe of left lung (ENCLB778HBT)

description:
https://www.encodeproject.org/experiments/ENCSR133AFF/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on lower lobe of left lung female adult (59 years)
experiment encode accession: ENCSR133AFF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR846VGG
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB778HBT
fragmentation methods: sonication (generic)
size range: 200-600

value: CTCF

value: lower lobe of left lung

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS493HET at ENCODE; https://www.encodeproject.org/ENCBS493HET/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Histone ChIP-seq from adrenal gland (ENCLB181GQU)

description:
https://www.encodeproject.org/experiments/ENCSR086QZD/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K27me3 ChIP-seq on adrenal gland tissue female adult (41 years)
experiment encode accession: ENCSR086QZD
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR071ILJ
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB181GQU
size range: 200-600

source_name: Homo sapiens female adult (41 years) adrenal gland tissue

value: adrenal gland

value: adult

value: 41 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: DM:no; HTN:no; CAD:no

value: ENCBS648AMG at ENCODE; https://www.encodeproject.org/ENCBS648AMG/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Control ChIP-seq from SK-N-SH (ENCLB036UGV)

description:
https://www.encodeproject.org/experiments/ENCSR618JZG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR618JZG
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB036UGV
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: SK-N-SH

value: cell line

value: female

value: child

value: 4 year

value: ATCC

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS704DDJ at ENCODE; https://www.encodeproject.org/ENCBS704DDJ/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: Histone ChIP-seq from adrenal gland (ENCLB010ETD)

description:
https://www.encodeproject.org/experiments/ENCSR086QZD/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on adrenal gland tissue female adult (41 years)
experiment encode accession: ENCSR086QZD
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR071ILJ
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB010ETD
size range: 200-600

source_name: Homo sapiens female adult (41 years) adrenal gland tissue, preserved by flash-freezing

value: adrenal gland

value: tissue

value: adult

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS491ORA at ENCODE; https://www.encodeproject.org/ENCBS491ORA/


title: Control ChIP-seq from middle frontal area 46 (ENCLB974JLT)

description:
https://www.encodeproject.org/experiments/ENCSR086BNR/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue male adult (78 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR086BNR
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB974JLT
size range: 200-600

source_name: Homo sapiens male adult (78 years) middle frontal area 46 tissue

value: middle frontal area 46

value: male

value: 78 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS375CUK at ENCODE; https://www.encodeproject.org/ENCBS375CUK/

value: Derived from ENCODE donor ENCDO623FPG; https://www.encodeproject.org/ENCDO623FPG/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB759HHY)

description:
https://www.encodeproject.org/experiments/ENCSR083FDD/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR083FDD
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR917XOL
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB759HHY
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue with Alzheimer's disease

value: female

value: 90 or above year

value: ENCBS837PKE at ENCODE; https://www.encodeproject.org/ENCBS837PKE/

value: Derived from ENCODE donor ENCDO201EUI; https://www.encodeproject.org/ENCDO201EUI/


title: Histone ChIP-seq from adrenal gland (ENCLB909ITO)

description:
https://www.encodeproject.org/experiments/ENCSR086QZD/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 ChIP-seq on adrenal gland tissue female adult (41 years)
experiment encode accession: ENCSR086QZD
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR071ILJ
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB909ITO
size range: 200-600

value: adrenal gland

value: 41 year

value: Shin Lin

value: DM:no; HTN:no; CAD:no

value: ENCBS648AMG at ENCODE; https://www.encodeproject.org/ENCBS648AMG/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Control ChIP-seq from adrenal gland (ENCLB797VOH)

description:
https://www.encodeproject.org/experiments/ENCSR071ILJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on adrenal gland female adult (41 years)
experiment encode accession: ENCSR071ILJ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB797VOH
size range: 200-600

value: tissue

value: adult

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS491ORA at ENCODE; https://www.encodeproject.org/ENCBS491ORA/


title: Histone ChIP-seq from adrenal gland (ENCLB527PNQ)

description:
https://www.encodeproject.org/experiments/ENCSR086QZD/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on adrenal gland tissue female adult (41 years)
experiment encode accession: ENCSR086QZD
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR071ILJ
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB527PNQ
size range: 200-600


title: Histone ChIP-seq from middle frontal area 46 (ENCLB615DRY)

description:
https://www.encodeproject.org/experiments/ENCSR083FDD/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR083FDD
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR917XOL
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB615DRY
size range: 200-600

value: middle frontal area 46

value: Bradley Bernstein, Broad

value: Rush University


title: Control ChIP-seq from middle frontal area 46 (ENCLB303GKP)

description:
https://www.encodeproject.org/experiments/ENCSR086BNR/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue male adult (78 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR086BNR
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB303GKP
size range: 200-600

value: male

value: 78 year

value: ENCBS375CUK at ENCODE; https://www.encodeproject.org/ENCBS375CUK/

value: Derived from ENCODE donor ENCDO623FPG; https://www.encodeproject.org/ENCDO623FPG/


title: Control ChIP-seq from adrenal gland (ENCLB306HEA)

description:
https://www.encodeproject.org/experiments/ENCSR071ILJ/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on adrenal gland female adult (41 years)
experiment encode accession: ENCSR071ILJ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB306HEA
size range: 200-600

value: adrenal gland

value: female

value: 41 year


title: Control ChIP-seq from SK-N-SH (ENCLB419JTJ)

description:
https://www.encodeproject.org/experiments/ENCSR042UCB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR042UCB
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB419JTJ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: SK-N-SH

value: cell line

value: child

value: 4 year

value: ATCC

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS476PJM at ENCODE; https://www.encodeproject.org/ENCBS476PJM/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: Control ChIP-seq from adrenal gland (ENCLB533PMU)

description:
https://www.encodeproject.org/experiments/ENCSR071ILJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on adrenal gland female adult (41 years)
experiment encode accession: ENCSR071ILJ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB533PMU
size range: 200-600

value: tissue

value: adult

value: Bradley Bernstein, Broad

value: Shin Lin

value: DM:no; HTN:no; CAD:no

value: ENCBS648AMG at ENCODE; https://www.encodeproject.org/ENCBS648AMG/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Control ChIP-seq from adrenal gland (ENCLB764SSG)

description:
https://www.encodeproject.org/experiments/ENCSR071ILJ/
***************
biological replicate number: 2
technical replicate number: 2
description: Control ChIP-seq on adrenal gland female adult (41 years)
experiment encode accession: ENCSR071ILJ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB764SSG
size range: 200-600

value: adrenal gland

value: female

value: 41 year


title: Histone ChIP-seq from middle frontal area 46 (ENCLB210BUN)

description:
https://www.encodeproject.org/experiments/ENCSR064QOA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR064QOA
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR437DCH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB210BUN
size range: 200-600

value: middle frontal area 46

value: 90 or above year

value: Rush University

value: ENCBS152TRC at ENCODE; https://www.encodeproject.org/ENCBS152TRC/

value: Derived from ENCODE donor ENCDO634UMA; https://www.encodeproject.org/ENCDO634UMA/


title: Histone ChIP-seq from mucosa of descending colon (ENCLB716QYC)

description:
https://www.encodeproject.org/experiments/ENCSR067VEM/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 ChIP-seq on mucosa of descending colon tissue male adult (40 years)
experiment encode accession: ENCSR067VEM
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR856YCA
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB716QYC
size range: 200-600

source_name: Homo sapiens male adult (40 years) mucosa of descending colon tissue

value: mucosa of descending colon

value: male

value: 40 year

value: DM:no; HTN:yes; CAD:no

value: ENCBS724VYT at ENCODE; https://www.encodeproject.org/ENCBS724VYT/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: Histone ChIP-seq from mucosa of descending colon (ENCLB289WLG)

description:
https://www.encodeproject.org/experiments/ENCSR067VEM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on mucosa of descending colon tissue male adult (40 years)
experiment encode accession: ENCSR067VEM
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR856YCA
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB289WLG
size range: 200-600

value: tissue

value: adult

value: Bradley Bernstein, Broad

value: Shin Lin


title: Control ChIP-seq from A549 (ENCLB235BDV)

description:
https://www.encodeproject.org/experiments/ENCSR085WWL/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 mins.
experiment encode accession: ENCSR085WWL
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB235BDV
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: cell line

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: ENCBS003GAH at ENCODE; https://www.encodeproject.org/ENCBS003GAH/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Control ChIP-seq from middle frontal area 46 (ENCLB074AZV)

description:
https://www.encodeproject.org/experiments/ENCSR617ONQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (81 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR617ONQ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB074AZV
size range: 200-600

source_name: Homo sapiens female adult (81 years) middle frontal area 46 tissue with Alzheimer's disease

value: middle frontal area 46

value: female

value: 81 year

value: Rush University

value: ENCBS554ZGD at ENCODE; https://www.encodeproject.org/ENCBS554ZGD/

value: Derived from ENCODE donor ENCDO097MEH; https://www.encodeproject.org/ENCDO097MEH/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB858WMH)

description:
https://www.encodeproject.org/experiments/ENCSR064QOA/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR064QOA
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR437DCH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB858WMH
size range: 200-600

value: 90 or above year

value: ENCBS152TRC at ENCODE; https://www.encodeproject.org/ENCBS152TRC/

value: Derived from ENCODE donor ENCDO634UMA; https://www.encodeproject.org/ENCDO634UMA/


title: Control ChIP-seq from middle frontal area 46 (ENCLB144OTP)

description:
https://www.encodeproject.org/experiments/ENCSR617ONQ/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (81 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR617ONQ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB144OTP
size range: 200-600

value: tissue

value: adult

value: Bradley Bernstein, Broad


title: Control ChIP-seq from middle frontal area 46 (ENCLB434WWF)

description:
https://www.encodeproject.org/experiments/ENCSR613JAK/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR613JAK
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB434WWF
size range: 200-600

value: ENCBS345MLG at ENCODE; https://www.encodeproject.org/ENCBS345MLG/

value: Derived from ENCODE donor ENCDO660TGP; https://www.encodeproject.org/ENCDO660TGP/


title: TF ChIP-seq from GM23338 (ENCLB005KKW)

description:
https://www.encodeproject.org/experiments/ENCSR611HGB/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on GM23338
experiment encode accession: ENCSR611HGB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR866FCH
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB005KKW
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens GM23338 cell line, preserved by cryopreservation

value: CTCF

value: cell line

value: PGP1 iPSCs

value: male

value: 53 year

value: George Church

value: ENCBS155WDP at ENCODE; https://www.encodeproject.org/ENCBS155WDP/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: TF ChIP-seq from GM23338 (ENCLB450KML)

description:
https://www.encodeproject.org/experiments/ENCSR611HGB/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on GM23338
experiment encode accession: ENCSR611HGB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR866FCH
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB450KML
fragmentation methods: sonication (generic)
size range: 200-600


title: Control ChIP-seq from SK-N-SH (ENCLB791VRC)

description:
https://www.encodeproject.org/experiments/ENCSR594IZZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR594IZZ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB791VRC
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting ESRRG treated with 6uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: female

value: child

value: 4 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS998RHO at ENCODE; https://www.encodeproject.org/ENCBS998RHO/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: Control ChIP-seq from middle frontal area 46 (ENCLB462PWE)

description:
https://www.encodeproject.org/experiments/ENCSR613JAK/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR613JAK
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB462PWE
size range: 200-600

value: middle frontal area 46

value: tissue

value: adult

value: 90 or above year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS345MLG at ENCODE; https://www.encodeproject.org/ENCBS345MLG/

value: Derived from ENCODE donor ENCDO660TGP; https://www.encodeproject.org/ENCDO660TGP/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB251LOI)

description:
https://www.encodeproject.org/experiments/ENCSR053KIS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR053KIS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR153LYY
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB251LOI
size range: 200-600

value: female

value: ENCBS835TES at ENCODE; https://www.encodeproject.org/ENCBS835TES/

value: Derived from ENCODE donor ENCDO672KST; https://www.encodeproject.org/ENCDO672KST/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB714GKV)

description:
https://www.encodeproject.org/experiments/ENCSR053KIS/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR053KIS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR153LYY
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB714GKV
size range: 200-600