title: TF ChIP-seq from MM.1S (ENCLB035XZO)

description:
https://www.encodeproject.org/experiments/ENCSR703KWN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR703KWN
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR264HOB
encode release date: 2017-12-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB035XZO
fragmentation methods: sonication (generic)
size range: 300-600
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens MM.1S immortalized cell line

value: cell line

value: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone

value: 42 year

value: immunoglobulin A lambda myeloma

value: Bradley Bernstein, Broad

value: ENCBS205VYW at ENCODE; https://www.encodeproject.org/ENCBS205VYW/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: TF ChIP-seq from HepG2 (ENCLB999ZEY)

status: Public on Mar 29 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR431FOF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR431FOF
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR055XHN
encode release date: 2017-08-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB999ZEY
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 10
nucleic acid starting quantity units: ng

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens HepG2 cell line

tag: antibody

tag: line

tag: description

value: Hep G2 (Hepatocellular carcinoma, human) Hep G2 is a perpetual cell line which was derived from the liver tissue of a 15-year-old Caucasian American male with a well-differentiated hepatocellular carcinoma. These cells are epithelial in morphology, have a model chromosome number of 55, and are not tumorigenic in nude mice.

tag: biosample encode accession

tag: Sex

value: male

tag: health state

value: hepatocellular carcinoma

tag: dev stage

value: child

tag: age

value: 15 year

tag: lab

tag: source

value: ATCC

tag: passage number

tag: link

value: ENCBS127GXY at ENCODE; https://www.encodeproject.org/ENCBS127GXY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB098TOL)

description:
https://www.encodeproject.org/experiments/ENCSR487LUQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR487LUQ
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR055XHN
encode release date: 2018-03-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB098TOL
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 15
nucleic acid starting quantity units: ng


title: DNase-seq from RWPE2 (ENCLB538IGH)

description:
https://www.encodeproject.org/experiments/ENCSR306BHE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR306BHE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB538IGH

source_name: Homo sapiens RWPE2 cell line

value: unknown

value: John Stamatoyannopoulos, UW

value: ENCBS490DPO at ENCODE; https://www.encodeproject.org/ENCBS490DPO/

value: Derived from ENCODE donor ENCDO135ZNV; https://www.encodeproject.org/ENCDO135ZNV/


title: TF ChIP-seq from HepG2 (ENCLB449HWQ)

description:
https://www.encodeproject.org/experiments/ENCSR431FOF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR431FOF
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR055XHN
encode release date: 2017-08-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB449HWQ
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 16
nucleic acid starting quantity units: ng

source_name: Homo sapiens HepG2 immortalized cell line

value: cell line

value: ENCBS011BYX at ENCODE; https://www.encodeproject.org/ENCBS011BYX/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from K562 (ENCLB468YUD)

description:
https://www.encodeproject.org/experiments/ENCSR844JVU/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-TCFL5 ChIP-seq on human K562
experiment encode accession: ENCSR844JVU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR833FPN
encode release date: 2021-01-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB468YUD
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting TCFL5

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS581VXF at ENCODE; https://www.encodeproject.org/ENCBS581VXF/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from RWPE2 (ENCLB644JJA)

description:
https://www.encodeproject.org/experiments/ENCSR306BHE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR306BHE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB644JJA

value: male

value: ATCC

value: ENCBS535KBN at ENCODE; https://www.encodeproject.org/ENCBS535KBN/


title: DNase-seq from T-cell (ENCLB961NNU)

description:
https://www.encodeproject.org/experiments/ENCSR305WLF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR305WLF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB961NNU

source_name: Homo sapiens male adult (25 years) T-cell primary cell

value: T-cell

value: primary cell

value: 25 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS714SHN at ENCODE; https://www.encodeproject.org/ENCBS714SHN/

value: Derived from ENCODE donor ENCDO637QAZ; https://www.encodeproject.org/ENCDO637QAZ/


title: TF ChIP-seq from K562 (ENCLB847KOP)

description:
https://www.encodeproject.org/experiments/ENCSR844JVU/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-TCFL5 ChIP-seq on human K562
experiment encode accession: ENCSR844JVU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR833FPN
encode release date: 2021-01-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB847KOP
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS743OTT at ENCODE; https://www.encodeproject.org/ENCBS743OTT/


title: DNase-seq from psoas muscle (ENCLB997TFP)

description:
https://www.encodeproject.org/experiments/ENCSR108SYM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR108SYM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB997TFP

source_name: Homo sapiens female adult (61 years) psoas muscle tissue, preserved by flash-freezing

value: psoas muscle

value: tissue

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: adult

value: 61 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS299VJH at ENCODE; https://www.encodeproject.org/ENCBS299VJH/

value: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/


title: DNase-seq from T-cell (ENCLB876EPC)

description:
https://www.encodeproject.org/experiments/ENCSR299BQG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR299BQG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB876EPC

source_name: Homo sapiens female adult (22 years) T-cell primary cell

value: T-cell

value: primary cell

value: 22 year

value: John Stamatoyannopoulos, UW

value: ENCBS437MGG at ENCODE; https://www.encodeproject.org/ENCBS437MGG/

value: Derived from ENCODE donor ENCDO252GAA; https://www.encodeproject.org/ENCDO252GAA/


title: DNase-seq from inflammatory macrophage (ENCLB957JYP)

description:
https://www.encodeproject.org/experiments/ENCSR721XAP/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR721XAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB957JYP
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (40 years) inflammatory macrophage primary cell

value: inflammatory macrophage

value: male

value: 40 year

value: Shelly Heimfeld

value: ENCBS201QWA at ENCODE; https://www.encodeproject.org/ENCBS201QWA/

value: Derived from ENCODE donor ENCDO661IWU; https://www.encodeproject.org/ENCDO661IWU/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB935MQC)

description:
https://www.encodeproject.org/experiments/ENCSR490UQP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR490UQP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB935MQC

source_name: Homo sapiens female adult (87 years) dorsolateral prefrontal cortex tissue

value: dorsolateral prefrontal cortex

value: tissue

value: female

value: adult

value: 87 year

value: Rush University

value: ENCBS265KOX at ENCODE; https://www.encodeproject.org/ENCBS265KOX/

value: Derived from ENCODE donor ENCDO423GGP; https://www.encodeproject.org/ENCDO423GGP/


title: DNase-seq from tibial artery (ENCLB652RIX)

description:
https://www.encodeproject.org/experiments/ENCSR102RSU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR102RSU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB652RIX

source_name: Homo sapiens male adult (37 years) tibial artery tissue

value: tibial artery

value: 37 year

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/

value: ENCBS123ZWB at ENCODE; https://www.encodeproject.org/ENCBS123ZWB/


title: DNase-seq from head of caudate nucleus (ENCLB741GKB)

description:
https://www.encodeproject.org/experiments/ENCSR305WAA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR305WAA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB741GKB

source_name: Homo sapiens female adult (90 or above years) head of caudate nucleus tissue with mild cognitive impairment

value: head of caudate nucleus

value: 90 year or above

value: ENCBS475EJG at ENCODE; https://www.encodeproject.org/ENCBS475EJG/

value: Derived from ENCODE donor ENCDO183VJV; https://www.encodeproject.org/ENCDO183VJV/


title: TF ChIP-seq from K562 (ENCLB028OGX)

description:
https://www.encodeproject.org/experiments/ENCSR297CGF/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-KLF6 ChIP-seq on human K562
experiment encode accession: ENCSR297CGF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR167ONN, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB028OGX
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting KLF6

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS237UZR at ENCODE; https://www.encodeproject.org/ENCBS237UZR/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB015WCX)

description:
https://www.encodeproject.org/experiments/ENCSR492FKD/
***************
biological replicate number: 2
technical replicate number: 2
description: eGFP-ZNF257 ChIP-seq on human K562
experiment encode accession: ENCSR492FKD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR899URK, ENCSR328FYU
encode release date: 2021-01-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB015WCX
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF257

value: female

value: adult

value: ENCBS378DTP at ENCODE; https://www.encodeproject.org/ENCBS378DTP/


title: DNase-seq from head of caudate nucleus (ENCLB966XHL)

description:
https://www.encodeproject.org/experiments/ENCSR839GHA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR839GHA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB966XHL

source_name: Homo sapiens female adult (89 years) head of caudate nucleus tissue with Alzheimer's disease

value: tissue

value: 89 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS725VZG at ENCODE; https://www.encodeproject.org/ENCBS725VZG/

value: Derived from ENCODE donor ENCDO853VGZ; https://www.encodeproject.org/ENCDO853VGZ/


title: DNase-seq from thoracic aorta (ENCLB494VPU)

description:
https://www.encodeproject.org/experiments/ENCSR298SDT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR298SDT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB494VPU

source_name: Homo sapiens male adult (37 years) thoracic aorta tissue

value: thoracic aorta

value: male

value: 37 year

value: Kristin Ardlie

value: ENCBS673LED at ENCODE; https://www.encodeproject.org/ENCBS673LED/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: DNase-seq from posterior cingulate gyrus (ENCLB683FVQ)

description:
https://www.encodeproject.org/experiments/ENCSR098ISE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR098ISE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB683FVQ

source_name: Homo sapiens female adult (90 or above years) posterior cingulate gyrus tissue with Alzheimer's disease

value: posterior cingulate gyrus

value: 90 year or above

value: ENCBS630BXI at ENCODE; https://www.encodeproject.org/ENCBS630BXI/

value: Derived from ENCODE donor ENCDO258GJF; https://www.encodeproject.org/ENCDO258GJF/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB148YCE)

description:
https://www.encodeproject.org/experiments/ENCSR097AMI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR097AMI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB148YCE

source_name: Homo sapiens female adult (33 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: primary cell

value: female

value: adult

value: 33 year

value: AllCells

value: ENCBS165JMM at ENCODE; https://www.encodeproject.org/ENCBS165JMM/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: TF ChIP-seq from K562 (ENCLB435ATA)

description:
https://www.encodeproject.org/experiments/ENCSR297CGF/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-KLF6 ChIP-seq on human K562
experiment encode accession: ENCSR297CGF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR167ONN, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB435ATA
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS518RFG at ENCODE; https://www.encodeproject.org/ENCBS518RFG/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from T follicular helper cell (ENCLB479WSR)

description:
https://www.encodeproject.org/experiments/ENCSR486KKY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR486KKY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB479WSR

source_name: Homo sapiens female adult (25 years) T follicular helper primary cell

value: T follicular helper cell

value: 25 year

value: John Stamatoyannopoulos, UW

value: ENCBS858ZOI at ENCODE; https://www.encodeproject.org/ENCBS858ZOI/

value: Derived from ENCODE donor ENCDO011KGM; https://www.encodeproject.org/ENCDO011KGM/


title: DNase-seq from CD8-positive naive resting alpha-beta T cell (ENCLB847FUD)

description:
https://www.encodeproject.org/experiments/ENCSR296TFH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR296TFH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB847FUD

source_name: Homo sapiens male adult (24 years) CD8-positive naive resting alpha-beta T primary cell

value: primary cell

value: male

value: adult

value: 24 year

value: ENCBS381FVJ at ENCODE; https://www.encodeproject.org/ENCBS381FVJ/

value: Derived from ENCODE donor ENCDO786GVO; https://www.encodeproject.org/ENCDO786GVO/


title: DNase-seq from head of caudate nucleus (ENCLB411JXL)

description:
https://www.encodeproject.org/experiments/ENCSR101HFF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR101HFF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB411JXL

source_name: Homo sapiens female adult (81 years) head of caudate nucleus tissue with Alzheimer's disease

value: head of caudate nucleus

value: tissue

value: female

value: 81 year

value: Rush University

value: ENCBS313EZC at ENCODE; https://www.encodeproject.org/ENCBS313EZC/

value: Derived from ENCODE donor ENCDO097MEH; https://www.encodeproject.org/ENCDO097MEH/


title: ATAC-seq from GM12878 (ENCLB907YRF)

description:
https://www.encodeproject.org/experiments/ENCSR095QNB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR095QNB
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB907YRF
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens GM12878 cell line

value: cell line

value: unknown

value: Mats Ljungman, UMichigan

value: Coriell

value: ENCBS530ZPB at ENCODE; https://www.encodeproject.org/ENCBS530ZPB/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/


title: DNase-seq from T-cell (ENCLB652TAH)

description:
https://www.encodeproject.org/experiments/ENCSR837ZSS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR837ZSS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB652TAH

source_name: Homo sapiens female adult (19 years) T-cell primary cell

value: T-cell

value: primary cell

value: adult

value: 19 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS139MFC at ENCODE; https://www.encodeproject.org/ENCBS139MFC/

value: Derived from ENCODE donor ENCDO880DKA; https://www.encodeproject.org/ENCDO880DKA/


title: DNase-seq from cardiac muscle cell (ENCLB175TKC)

description:
https://www.encodeproject.org/experiments/ENCSR842KCP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR842KCP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2017-11-22
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB175TKC
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500,Illumina HiSeq 2500

source_name: Homo sapiens cardiac muscle in vitro differentiated cells fetal

value: cardiac muscle cell

value: in vitro differentiated cells

value: fetal

value: not collected

value: ENCBS806KLM at ENCODE; https://www.encodeproject.org/ENCBS806KLM/

value: Derived from ENCODE donor ENCDO924HBJ; https://www.encodeproject.org/ENCDO924HBJ/


title: DNase-seq from NCI-H929 (ENCLB151HNS)

description:
https://www.encodeproject.org/experiments/ENCSR090SMP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR090SMP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB151HNS

source_name: Homo sapiens NCI-H929 cell line

value: cell line

value: female

value: IgAk myeloma

value: 62 year

value: ATCC

value: ENCBS588WMC at ENCODE; https://www.encodeproject.org/ENCBS588WMC/

value: Derived from ENCODE donor ENCDO220OYR; https://www.encodeproject.org/ENCDO220OYR/


title: TF ChIP-seq from K562 (ENCLB069FAY)

description:
https://www.encodeproject.org/experiments/ENCSR492FKD/
***************
biological replicate number: 1
technical replicate number: 2
description: eGFP-ZNF257 ChIP-seq on human K562
experiment encode accession: ENCSR492FKD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR899URK, ENCSR328FYU
encode release date: 2021-01-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB069FAY
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS920MTB at ENCODE; https://www.encodeproject.org/ENCBS920MTB/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from NCI-H929 (ENCLB849PYZ)

description:
https://www.encodeproject.org/experiments/ENCSR090SMP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR090SMP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB849PYZ

value: John Stamatoyannopoulos, UW

value: ENCBS095RIH at ENCODE; https://www.encodeproject.org/ENCBS095RIH/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB637FBH)

description:
https://www.encodeproject.org/experiments/ENCSR839RAJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR839RAJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB637FBH

source_name: Homo sapiens female adult (85 years) dorsolateral prefrontal cortex tissue with Alzheimer's disease

value: dorsolateral prefrontal cortex

value: tissue

value: 85 year

value: Rush University

value: ENCBS758YMW at ENCODE; https://www.encodeproject.org/ENCBS758YMW/

value: Derived from ENCODE donor ENCDO080EZF; https://www.encodeproject.org/ENCDO080EZF/


title: DNase-seq from placenta (ENCLB797IHF)

description:
https://www.encodeproject.org/experiments/ENCSR831QMZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR831QMZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB797IHF

source_name: Homo sapiens female embryo placenta tissue

value: placenta

value: female

value: embryonic

value: unknown

value: John Stamatoyannopoulos

value: ENCBS320EOD at ENCODE; https://www.encodeproject.org/ENCBS320EOD/

value: Derived from ENCODE donor ENCDO412HAL; https://www.encodeproject.org/ENCDO412HAL/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB789IGK)

description:
https://www.encodeproject.org/experiments/ENCSR832XVZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR832XVZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB789IGK

source_name: Homo sapiens female adult (86 years) dorsolateral prefrontal cortex tissue with Alzheimer's disease

value: adult

value: 86 year

value: ENCBS255RBJ at ENCODE; https://www.encodeproject.org/ENCBS255RBJ/

value: Derived from ENCODE donor ENCDO997SGX; https://www.encodeproject.org/ENCDO997SGX/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB753PJE)

description:
https://www.encodeproject.org/experiments/ENCSR832IQN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR832IQN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB753PJE

source_name: Homo sapiens female adult (39 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 39 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS084JLL at ENCODE; https://www.encodeproject.org/ENCBS084JLL/

value: Derived from ENCODE donor ENCDO222BBW; https://www.encodeproject.org/ENCDO222BBW/


title: DNase-seq from right cardiac atrium (ENCLB256AUJ)

description:
https://www.encodeproject.org/experiments/ENCSR485UQY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR485UQY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB256AUJ

source_name: Homo sapiens male adult (60 years) right cardiac atrium tissue, preserved by flash-freezing

value: right cardiac atrium

value: tissue

value: male

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: 60 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS365SCX at ENCODE; https://www.encodeproject.org/ENCBS365SCX/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: TF ChIP-seq from MCF-7 (ENCLB645POA)

description:
https://www.encodeproject.org/experiments/ENCSR829WBA/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-OVOL1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR829WBA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR925PLG, ENCSR734XLI
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB645POA
size range: 450-650

source_name: Homo sapiens MCF-7 cell line genetically modified (insertion) using CRISPR targeting OVOL1

value: cell line

value: MCF7 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to OVOL1.

value: female

value: breast cancer (adenocarcinoma)

value: adult

value: 69 year

value: Michael Snyder

value: ENCBS952IAS at ENCODE; https://www.encodeproject.org/ENCBS952IAS/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: TF ChIP-seq from MCF-7 (ENCLB004FGR)

description:
https://www.encodeproject.org/experiments/ENCSR829WBA/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-OVOL1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR829WBA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR925PLG, ENCSR734XLI
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB004FGR
size range: 450-650

value: ENCBS993BJG at ENCODE; https://www.encodeproject.org/ENCBS993BJG/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB876KJI)

description:
https://www.encodeproject.org/experiments/ENCSR289GZQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR289GZQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB876KJI

source_name: Homo sapiens male adult (38 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS176WFZ at ENCODE; https://www.encodeproject.org/ENCBS176WFZ/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from suprapubic skin (ENCLB833TKC)

description:
https://www.encodeproject.org/experiments/ENCSR101QXF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR101QXF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB833TKC

source_name: Homo sapiens female adult (53 years) suprapubic skin tissue

value: suprapubic skin

value: tissue

value: 53 year

value: Kristin Ardlie

value: ENCBS670XUB at ENCODE; https://www.encodeproject.org/ENCBS670XUB/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: DNase-seq from T-cell (ENCLB041HMD)

description:
https://www.encodeproject.org/experiments/ENCSR815DWW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR815DWW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB041HMD

source_name: Homo sapiens male adult (19 years) T-cell primary cell

value: T-cell

value: adult

value: 19 year

value: ENCBS016ORZ at ENCODE; https://www.encodeproject.org/ENCBS016ORZ/

value: Derived from ENCODE donor ENCDO737NEB; https://www.encodeproject.org/ENCDO737NEB/


title: DNase-seq from heart left ventricle (ENCLB076AEN)

description:
https://www.encodeproject.org/experiments/ENCSR299QGI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR299QGI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB076AEN

source_name: Homo sapiens male adult (43 years) heart left ventricle tissue

value: heart left ventricle

value: male

value: nonischemic (EF 23%, LVEDD 6.1; RV moderate dilation, normal function)

value: 43 year

value: Michael Snyder, Stanford

value: Shin Lin

value: ENCBS880PTC at ENCODE; https://www.encodeproject.org/ENCBS880PTC/

value: Derived from ENCODE donor ENCDO967KID; https://www.encodeproject.org/ENCDO967KID/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB295YJS)

description:
https://www.encodeproject.org/experiments/ENCSR811OUF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR811OUF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB295YJS

source_name: Homo sapiens male adult (86 years) dorsolateral prefrontal cortex tissue

value: dorsolateral prefrontal cortex

value: tissue

value: 86 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS963BQQ at ENCODE; https://www.encodeproject.org/ENCBS963BQQ/

value: Derived from ENCODE donor ENCDO666UNK; https://www.encodeproject.org/ENCDO666UNK/


title: DNase-seq from tibial nerve (ENCLB007TTK)

description:
https://www.encodeproject.org/experiments/ENCSR484UAU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR484UAU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB007TTK

source_name: Homo sapiens male adult (37 years) tibial nerve tissue

value: tibial nerve

value: adult

value: 37 year

value: Kristin Ardlie

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/

value: ENCBS127DSW at ENCODE; https://www.encodeproject.org/ENCBS127DSW/


title: DNase-seq from T-cell (ENCLB706DMG)

description:
https://www.encodeproject.org/experiments/ENCSR290NGL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR290NGL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB706DMG

source_name: Homo sapiens female adult (32 years) T-cell primary cell

value: T-cell

value: primary cell

value: female

value: 32 year

value: AllCells

value: ENCBS559VEE at ENCODE; https://www.encodeproject.org/ENCBS559VEE/

value: Derived from ENCODE donor ENCDO473DQU; https://www.encodeproject.org/ENCDO473DQU/


title: ATAC-seq from GM12878 (ENCLB584REF)

description:
https://www.encodeproject.org/experiments/ENCSR095QNB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR095QNB
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB584REF
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens GM12878 cell line

value: cell line

value: unknown

value: Mats Ljungman, UMichigan

value: Coriell

value: ENCBS923ZKG at ENCODE; https://www.encodeproject.org/ENCBS923ZKG/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB791QHN)

description:
https://www.encodeproject.org/experiments/ENCSR824YLD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR824YLD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB791QHN

source_name: Homo sapiens female adult (33 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: adult

value: 33 year

value: John Stamatoyannopoulos, UW

value: ENCBS264YFM at ENCODE; https://www.encodeproject.org/ENCBS264YFM/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: DNase-seq from heart right ventricle (ENCLB999QAR)

description:
https://www.encodeproject.org/experiments/ENCSR298OIK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR298OIK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB999QAR

source_name: Homo sapiens male adult (43 years) heart right ventricle tissue

value: heart right ventricle

value: tissue

value: male

value: nonischemic (EF 23%, LVEDD 6.1; RV moderate dilation, normal function)

value: 43 year

value: Michael Snyder, Stanford

value: Shin Lin

value: ENCBS846XLB at ENCODE; https://www.encodeproject.org/ENCBS846XLB/

value: Derived from ENCODE donor ENCDO967KID; https://www.encodeproject.org/ENCDO967KID/


title: ATAC-seq from K562 (ENCLB758GEG)

description:
https://www.encodeproject.org/experiments/ENCSR483RKN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR483RKN
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-07-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB758GEG
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Mats Ljungman, UMichigan

value: ATCC

value: ENCBS644OPH at ENCODE; https://www.encodeproject.org/ENCBS644OPH/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from body of pancreas (ENCLB648HIO)

description:
https://www.encodeproject.org/experiments/ENCSR828FVZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR828FVZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB648HIO

source_name: Homo sapiens female adult (53 years) body of pancreas tissue

value: body of pancreas

value: adult

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS405TFR at ENCODE; https://www.encodeproject.org/ENCBS405TFR/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: DNase-seq from CD8-positive naive resting alpha-beta T cell (ENCLB424MSG)

description:
https://www.encodeproject.org/experiments/ENCSR283TME/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR283TME
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB424MSG

source_name: Homo sapiens male adult (30 years) CD8-positive naive resting alpha-beta T primary cell

value: primary cell

value: male

value: 30 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS818QCB at ENCODE; https://www.encodeproject.org/ENCBS818QCB/

value: Derived from ENCODE donor ENCDO166AGR; https://www.encodeproject.org/ENCDO166AGR/


title: DNase-seq from heart left ventricle (ENCLB307OAP)

description:
https://www.encodeproject.org/experiments/ENCSR805EGZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR805EGZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB307OAP

source_name: Homo sapiens female adult (56 years) heart left ventricle tissue

value: heart left ventricle

value: tissue

value: female

value: PGD

value: 56 year

value: Michael Snyder, Stanford

value: Shin Lin

value: ENCBS621PCO at ENCODE; https://www.encodeproject.org/ENCBS621PCO/

value: Derived from ENCODE donor ENCDO907YUG; https://www.encodeproject.org/ENCDO907YUG/


title: DNase-seq from T-cell (ENCLB189HAF)

description:
https://www.encodeproject.org/experiments/ENCSR283MZJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR283MZJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB189HAF

source_name: Homo sapiens female adult (33 years) T-cell primary cell

value: T-cell

value: adult

value: 33 year

value: John Stamatoyannopoulos, UW

value: ENCBS391HYB at ENCODE; https://www.encodeproject.org/ENCBS391HYB/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: TF ChIP-seq from K562 (ENCLB184ULU)

description:
https://www.encodeproject.org/experiments/ENCSR802AHH/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-BCL6 ChIP-seq on human K562
experiment encode accession: ENCSR802AHH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR653VRZ
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB184ULU
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting BCL6

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Kevin White

value: ENCBS173SZE at ENCODE; https://www.encodeproject.org/ENCBS173SZE/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from posterior cingulate gyrus (ENCLB405AMN)

description:
https://www.encodeproject.org/experiments/ENCSR086PIL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR086PIL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB405AMN

source_name: Homo sapiens female adult (90 or above years) posterior cingulate gyrus tissue with Alzheimer's disease

value: posterior cingulate gyrus

value: tissue

value: female

value: 90 year or above

value: Rush University

value: ENCBS516VWB at ENCODE; https://www.encodeproject.org/ENCBS516VWB/

value: Derived from ENCODE donor ENCDO020BIL; https://www.encodeproject.org/ENCDO020BIL/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB291LUQ)

description:
https://www.encodeproject.org/experiments/ENCSR086FTP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR086FTP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB291LUQ

source_name: Homo sapiens male adult (38 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: primary cell

value: male

value: adult

value: 38 year

value: AllCells

value: ENCBS986DVG at ENCODE; https://www.encodeproject.org/ENCBS986DVG/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from left colon (ENCLB769RDE)

description:
https://www.encodeproject.org/experiments/ENCSR279SXQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR279SXQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB769RDE

source_name: Homo sapiens female adult (46 years) left colon tissue, preserved by flash-freezing

value: left colon

value: DM:no; HTN:no; CAD:no

value: 46 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS148LLB at ENCODE; https://www.encodeproject.org/ENCBS148LLB/

value: Derived from ENCODE donor ENCDO411EVD; https://www.encodeproject.org/ENCDO411EVD/


title: DNase-seq from T-cell (ENCLB362WQH)

description:
https://www.encodeproject.org/experiments/ENCSR803JVQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR803JVQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB362WQH

source_name: Homo sapiens male adult (34 years) T-cell primary cell

value: T-cell

value: 34 year

value: John Stamatoyannopoulos, UW

value: ENCBS759IDR at ENCODE; https://www.encodeproject.org/ENCBS759IDR/

value: Derived from ENCODE donor ENCDO348MRX; https://www.encodeproject.org/ENCDO348MRX/


title: TF ChIP-seq from K562 (ENCLB641BSU)

description:
https://www.encodeproject.org/experiments/ENCSR802AHH/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-BCL6 ChIP-seq on human K562
experiment encode accession: ENCSR802AHH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR653VRZ
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB641BSU
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Kevin White

value: ENCBS720BIH at ENCODE; https://www.encodeproject.org/ENCBS720BIH/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB602GNF)

description:
https://www.encodeproject.org/experiments/ENCSR801JWB/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-HOMEZ ChIP-seq on human K562
experiment encode accession: ENCSR801JWB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR177ADZ, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB602GNF
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting HOMEZ

value: HOMEZ

value: Michael Snyder, Stanford

value: ENCBS819BRH at ENCODE; https://www.encodeproject.org/ENCBS819BRH/


title: DNase-seq from head of caudate nucleus (ENCLB069CPS)

description:
https://www.encodeproject.org/experiments/ENCSR814DYF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR814DYF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB069CPS

source_name: Homo sapiens male adult (90 or above years) head of caudate nucleus tissue with mild cognitive impairment

value: head of caudate nucleus

value: tissue

value: male

value: 90 year or above

value: Rush University

value: ENCBS404ZYC at ENCODE; https://www.encodeproject.org/ENCBS404ZYC/

value: Derived from ENCODE donor ENCDO877NVF; https://www.encodeproject.org/ENCDO877NVF/


title: DNase-seq from left lobe of liver (ENCLB439RQM)

description:
https://www.encodeproject.org/experiments/ENCSR802ZYE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR802ZYE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB439RQM

source_name: Homo sapiens male adult (45 years) left lobe of liver tissue, preserved by flash-freezing

value: left lobe of liver

value: DM:no; HTN:yes; CAD:no

value: 45 year

value: Yiing Lin, MD, PhD

value: ENCBS534CBI at ENCODE; https://www.encodeproject.org/ENCBS534CBI/

value: Derived from ENCODE donor ENCDO757VPQ; https://www.encodeproject.org/ENCDO757VPQ/


title: DNase-seq from head of caudate nucleus (ENCLB348NKT)

description:
https://www.encodeproject.org/experiments/ENCSR085XKS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR085XKS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB348NKT

source_name: Homo sapiens male adult (80 years) head of caudate nucleus tissue with Cognitive impairment, Alzheimer's disease

value: adult

value: 80 year

value: John Stamatoyannopoulos, UW

value: ENCBS015WFT at ENCODE; https://www.encodeproject.org/ENCBS015WFT/

value: Derived from ENCODE donor ENCDO920NSS; https://www.encodeproject.org/ENCDO920NSS/


title: TF ChIP-seq from K562 (ENCLB418CYU)

description:
https://www.encodeproject.org/experiments/ENCSR801JWB/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-HOMEZ ChIP-seq on human K562
experiment encode accession: ENCSR801JWB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR177ADZ, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB418CYU
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: HOMEZ

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS275TOJ at ENCODE; https://www.encodeproject.org/ENCBS275TOJ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from tibial artery (ENCLB175GCN)

description:
https://www.encodeproject.org/experiments/ENCSR090IDV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR090IDV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB175GCN

source_name: Homo sapiens male adult (54 years) tibial artery tissue

value: tibial artery

value: tissue

value: male

value: 54 year

value: Kristin Ardlie

value: ENCBS327QOW at ENCODE; https://www.encodeproject.org/ENCBS327QOW/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB012OMK)

description:
https://www.encodeproject.org/experiments/ENCSR819GAF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR819GAF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB012OMK

source_name: Homo sapiens female adult (90 or above years) dorsolateral prefrontal cortex tissue with mild cognitive impairment

value: dorsolateral prefrontal cortex

value: adult

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS963MQM at ENCODE; https://www.encodeproject.org/ENCBS963MQM/

value: Derived from ENCODE donor ENCDO033BMB; https://www.encodeproject.org/ENCDO033BMB/


title: TF ChIP-seq from K562 (ENCLB823HJS)

description:
https://www.encodeproject.org/experiments/ENCSR276RQG/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF696 ChIP-seq on human K562
experiment encode accession: ENCSR276RQG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR479AEG, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB823HJS
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF696

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS593OLS at ENCODE; https://www.encodeproject.org/ENCBS593OLS/


title: TF ChIP-seq from K562 (ENCLB574BDJ)

description:
https://www.encodeproject.org/experiments/ENCSR276RQG/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF696 ChIP-seq on human K562
experiment encode accession: ENCSR276RQG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR479AEG, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB574BDJ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: ENCBS741NTM at ENCODE; https://www.encodeproject.org/ENCBS741NTM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from K562 (ENCLB918NXF)

description:
https://www.encodeproject.org/experiments/ENCSR483RKN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR483RKN
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-07-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB918NXF
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line

value: Mats Ljungman, UMichigan

value: ATCC

value: ENCBS321NQQ at ENCODE; https://www.encodeproject.org/ENCBS321NQQ/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB218MSZ)

description:
https://www.encodeproject.org/experiments/ENCSR800MBE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR800MBE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB218MSZ

source_name: Homo sapiens female adult (82 years) dorsolateral prefrontal cortex tissue

value: dorsolateral prefrontal cortex

value: tissue

value: adult

value: 82 year

value: ENCBS705XUU at ENCODE; https://www.encodeproject.org/ENCBS705XUU/

value: Derived from ENCODE donor ENCDO290OPS; https://www.encodeproject.org/ENCDO290OPS/


title: DNase-seq from posterior cingulate gyrus (ENCLB334XZR)

description:
https://www.encodeproject.org/experiments/ENCSR083HYP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR083HYP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB334XZR

source_name: Homo sapiens female adult (90 or above years) posterior cingulate gyrus tissue

value: posterior cingulate gyrus

value: female

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS902WKK at ENCODE; https://www.encodeproject.org/ENCBS902WKK/

value: Derived from ENCODE donor ENCDO250PFZ; https://www.encodeproject.org/ENCDO250PFZ/


title: DNase-seq from femur (ENCLB236BWV)

description:
https://www.encodeproject.org/experiments/ENCSR805XIF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR805XIF
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-12-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB236BWV
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens female embryo (98 days) femur tissue

value: femur

value: embryonic

value: 98 day

value: BDRL

value: ENCBS337FPV at ENCODE; https://www.encodeproject.org/ENCBS337FPV/

value: Derived from ENCODE donor ENCDO298NZG; https://www.encodeproject.org/ENCDO298NZG/


title: DNase-seq from T-cell (ENCLB945MOR)

description:
https://www.encodeproject.org/experiments/ENCSR473LSX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR473LSX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB945MOR

source_name: Homo sapiens male adult (38 years) T-cell primary cell

value: T-cell

value: primary cell

value: male

value: adult

value: 38 year

value: AllCells

value: ENCBS601VVY at ENCODE; https://www.encodeproject.org/ENCBS601VVY/

value: Derived from ENCODE donor ENCDO323QDI; https://www.encodeproject.org/ENCDO323QDI/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB604FYP)

description:
https://www.encodeproject.org/experiments/ENCSR800KVI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR800KVI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB604FYP

source_name: Homo sapiens female adult (84 years) dorsolateral prefrontal cortex tissue

value: dorsolateral prefrontal cortex

value: tissue

value: female

value: 84 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS538XRD at ENCODE; https://www.encodeproject.org/ENCBS538XRD/

value: Derived from ENCODE donor ENCDO461DJY; https://www.encodeproject.org/ENCDO461DJY/


title: DNase-seq from CD14-positive monocyte (ENCLB534ETE)

description:
https://www.encodeproject.org/experiments/ENCSR277ZHX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR277ZHX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB534ETE
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500,Illumina HiSeq 2500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (21 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: 21 year

value: Shelly Heimfeld

value: ENCBS087UPP at ENCODE; https://www.encodeproject.org/ENCBS087UPP/

value: Derived from ENCODE donor ENCDO733YAB; https://www.encodeproject.org/ENCDO733YAB/


title: DNase-seq from psoas muscle (ENCLB062SVF)

description:
https://www.encodeproject.org/experiments/ENCSR082PDJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR082PDJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB062SVF

source_name: Homo sapiens female child (16 years) psoas muscle tissue, preserved by flash-freezing

value: psoas muscle

value: DM:no; HTN:no; CAD:no

value: child

value: 16 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS106WDM at ENCODE; https://www.encodeproject.org/ENCBS106WDM/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: ATAC-seq from thyroid gland (ENCLB285URY)

description:
https://www.encodeproject.org/experiments/ENCSR474XFV/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human thyroid gland
experiment encode accession: ENCSR474XFV
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB285URY
size range: 150-250

source_name: Homo sapiens thyroid gland tissue male adult (54 years)

value: thyroid gland

value: tissue

value: male

value: 54 year

value: adult

value: ENCBS995JJM at ENCODE; https://www.encodeproject.org/ENCBS995JJM/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: DNase-seq from sigmoid colon (ENCLB695FPT)

description:
https://www.encodeproject.org/experiments/ENCSR276ITP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR276ITP
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB695FPT

source_name: Homo sapiens female adult (53 years) sigmoid colon tissue

value: sigmoid colon

value: female

value: 53 year

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS031FCA at ENCODE; https://www.encodeproject.org/ENCBS031FCA/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: DNase-seq from H9 (ENCLB476DLP)

description:
https://www.encodeproject.org/experiments/ENCSR275ICP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR275ICP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2017-12-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB476DLP

source_name: Homo sapiens H9 cell line

value: cell line

value: healthy

value: embryonic

value: 5 day

value: Stephen Dalton

value: ENCBS485PGF at ENCODE; https://www.encodeproject.org/ENCBS485PGF/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: DNase-seq from retina (ENCLB919JBV)

description:
https://www.encodeproject.org/experiments/ENCSR474GZQ/
***************
biological replicate number: 1
technical replicate number: 1,2
description:
experiment encode accession: ENCSR474GZQ
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2016-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB919JBV

source_name: Homo sapiens embryo (125 days) retina tissue

value: retina

value: tissue

value: not collected

value: 125 day

value: Thomas Reh

value: ENCBS704PVR at ENCODE; https://www.encodeproject.org/ENCBS704PVR/

value: Derived from ENCODE donor ENCDO225GSN; https://www.encodeproject.org/ENCDO225GSN/


title: DNase-seq from retina (ENCLB238FWZ)

description:
https://www.encodeproject.org/experiments/ENCSR474GZQ/
***************
biological replicate number: 2
technical replicate number: 2,1
description:
experiment encode accession: ENCSR474GZQ
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2016-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB238FWZ

source_name: Homo sapiens male embryo (103 days) retina tissue

value: male

value: 103 day

value: John Stamatoyannopoulos, UW

value: ENCBS797BYT at ENCODE; https://www.encodeproject.org/ENCBS797BYT/

value: Derived from ENCODE donor ENCDO869VTH; https://www.encodeproject.org/ENCDO869VTH/


title: DNase-seq from B cell (ENCLB419QBN)

description:
https://www.encodeproject.org/experiments/ENCSR468AKF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR468AKF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB419QBN

source_name: Homo sapiens male adult (22 years) B primary cell

value: B cell

value: primary cell

value: adult

value: 22 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS052PQE at ENCODE; https://www.encodeproject.org/ENCBS052PQE/

value: Derived from ENCODE donor ENCDO383AQS; https://www.encodeproject.org/ENCDO383AQS/


title: DNase-seq from adrenal gland (ENCLB202KDD)

description:
https://www.encodeproject.org/experiments/ENCSR277KRY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR277KRY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB202KDD

source_name: Homo sapiens adrenal gland tissue male adult (37 years)

value: adrenal gland

value: tissue

value: 37 year

value: ENCBS371OZD at ENCODE; https://www.encodeproject.org/ENCBS371OZD/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: DNase-seq from H9 (ENCLB079RKK)

description:
https://www.encodeproject.org/experiments/ENCSR275ICP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR275ICP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2017-12-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB079RKK

value: cell line

value: female

value: healthy

value: embryonic

value: 5 day

value: Stephen Dalton

value: ENCBS113LZP at ENCODE; https://www.encodeproject.org/ENCBS113LZP/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: DNase-seq from T-cell (ENCLB055TDL)

description:
https://www.encodeproject.org/experiments/ENCSR467MSP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR467MSP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB055TDL

source_name: Homo sapiens female adult (23 years) T-cell primary cell

value: T-cell

value: primary cell

value: adult

value: 23 year

value: John Stamatoyannopoulos, UW

value: ENCBS516ANN at ENCODE; https://www.encodeproject.org/ENCBS516ANN/

value: Derived from ENCODE donor ENCDO737JLN; https://www.encodeproject.org/ENCDO737JLN/


title: DNase-seq from ovary (ENCLB759GGT)

description:
https://www.encodeproject.org/experiments/ENCSR798XLO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR798XLO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB759GGT

source_name: Homo sapiens female adult (46 years) ovary tissue, preserved by flash-freezing

value: ovary

value: tissue

value: DM:no; HTN:no; CAD:no

value: 46 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS598ITE at ENCODE; https://www.encodeproject.org/ENCBS598ITE/

value: Derived from ENCODE donor ENCDO411EVD; https://www.encodeproject.org/ENCDO411EVD/


title: ATAC-seq from gastrocnemius medialis (ENCLB317HCF)

description:
https://www.encodeproject.org/experiments/ENCSR258JCL/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human gastrocnemius medialis
experiment encode accession: ENCSR258JCL
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB317HCF
size range: 150-250

source_name: Homo sapiens male adult (37 years) gastrocnemius medialis tissue

value: gastrocnemius medialis

value: male

value: 37 year

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/

value: ENCBS168UHK at ENCODE; https://www.encodeproject.org/ENCBS168UHK/


title: TF ChIP-seq from Loucy (ENCLB700NEB)

description:
https://www.encodeproject.org/experiments/ENCSR783QUL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR783QUL
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR648HLP
encode release date: 2018-02-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB700NEB
fragmentation methods: none
size range: 200-600
nucleic acid starting quantity: 2
nucleic acid starting quantity units: ng

source_name: Homo sapiens Loucy immortalized cell line

value: Loucy

value: cell line

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: adult

value: female

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: Bradley Bernstein, Broad

value: ENCBS170DPY at ENCODE; https://www.encodeproject.org/ENCBS170DPY/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ATAC-seq from body of pancreas (ENCLB987XWU)

description:
https://www.encodeproject.org/experiments/ENCSR765MXG/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human body of pancreas
experiment encode accession: ENCSR765MXG
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB987XWU
size range: 150-250

source_name: Homo sapiens body of pancreas tissue male adult (54 years)

value: body of pancreas

value: tissue

value: Michael Snyder, Stanford

value: 54 year

value: ENCBS867VCV at ENCODE; https://www.encodeproject.org/ENCBS867VCV/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: DNase-seq from head of caudate nucleus (ENCLB440FVC)

description:
https://www.encodeproject.org/experiments/ENCSR276MDV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR276MDV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB440FVC

source_name: Homo sapiens male adult (87 years) head of caudate nucleus tissue

value: head of caudate nucleus

value: male

value: 87 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS975LVC at ENCODE; https://www.encodeproject.org/ENCBS975LVC/

value: Derived from ENCODE donor ENCDO123QRW; https://www.encodeproject.org/ENCDO123QRW/


title: TF ChIP-seq from MCF-7 (ENCLB396ZHI)

description:
https://www.encodeproject.org/experiments/ENCSR463GOT/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ESR1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR463GOT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR734XLI, ENCSR517FPJ
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB396ZHI
size range: 450-650

source_name: Homo sapiens MCF-7 cell line genetically modified (insertion) using CRISPR targeting ESR1

value: cell line

value: MCF7 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ESR1.

value: female

value: breast cancer (adenocarcinoma)

value: adult

value: 69 year

value: Michael Snyder

value: ENCBS115YBF at ENCODE; https://www.encodeproject.org/ENCBS115YBF/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: DNase-seq from head of caudate nucleus (ENCLB565VGT)

description:
https://www.encodeproject.org/experiments/ENCSR797FIM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR797FIM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB565VGT

source_name: Homo sapiens female adult (90 or above years) head of caudate nucleus tissue with Alzheimer's disease

value: tissue

value: 90 year or above

value: ENCBS550DMB at ENCODE; https://www.encodeproject.org/ENCBS550DMB/

value: Derived from ENCODE donor ENCDO658JXQ; https://www.encodeproject.org/ENCDO658JXQ/


title: TF ChIP-seq from K562 (ENCLB779XKF)

description:
https://www.encodeproject.org/experiments/ENCSR271RRH/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF253 ChIP-seq on human K562
experiment encode accession: ENCSR271RRH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR914PHJ, ENCSR532WSQ
encode release date: 2021-02-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB779XKF
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF253

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: ATCC

value: ENCBS843UJX at ENCODE; https://www.encodeproject.org/ENCBS843UJX/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from brain (ENCLB847DKP)

description:
https://www.encodeproject.org/experiments/ENCSR420RWU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR420RWU
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2018-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB847DKP

source_name: Homo sapiens male embryo (105 days) brain tissue

value: brain

value: male

value: embryonic

value: 105 day

value: John Stamatoyannopoulos, UW

value: BDRL

value: ENCBS493ZWQ at ENCODE; https://www.encodeproject.org/ENCBS493ZWQ/

value: Derived from ENCODE donor ENCDO908MUY; https://www.encodeproject.org/ENCDO908MUY/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB421MOS)

description:
https://www.encodeproject.org/experiments/ENCSR060ZXQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR060ZXQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB421MOS

source_name: Homo sapiens female adult (33 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: female

value: adult

value: 33 year

value: AllCells

value: ENCBS942IVC at ENCODE; https://www.encodeproject.org/ENCBS942IVC/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: DNase-seq from posterior cingulate gyrus (ENCLB931TER)

description:
https://www.encodeproject.org/experiments/ENCSR060UPU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR060UPU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB931TER

source_name: Homo sapiens female adult (89 years) posterior cingulate gyrus tissue with Alzheimer's disease

value: posterior cingulate gyrus

value: tissue

value: 89 year

value: Rush University

value: ENCBS818PHQ at ENCODE; https://www.encodeproject.org/ENCBS818PHQ/

value: Derived from ENCODE donor ENCDO843TIL; https://www.encodeproject.org/ENCDO843TIL/


title: TF ChIP-seq from K562 (ENCLB084LYO)

description:
https://www.encodeproject.org/experiments/ENCSR271RRH/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF253 ChIP-seq on human K562
experiment encode accession: ENCSR271RRH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR914PHJ, ENCSR532WSQ
encode release date: 2021-02-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB084LYO
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: ATCC

value: ENCBS308GNZ at ENCODE; https://www.encodeproject.org/ENCBS308GNZ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB759VVJ)

description:
https://www.encodeproject.org/experiments/ENCSR796YOJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR796YOJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB759VVJ

source_name: Homo sapiens female adult (90 or above years) dorsolateral prefrontal cortex tissue with Alzheimer's disease

value: dorsolateral prefrontal cortex

value: female

value: adult

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: ENCBS752IJY at ENCODE; https://www.encodeproject.org/ENCBS752IJY/

value: Derived from ENCODE donor ENCDO637GUS; https://www.encodeproject.org/ENCDO637GUS/


title: DNase-seq from suppressor macrophage (ENCLB151JAW)

description:
https://www.encodeproject.org/experiments/ENCSR711AQM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR711AQM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB151JAW
instrument models: Illumina HiSeq 2000,Illumina HiSeq 4000

source_name: Homo sapiens male adult (24 years) suppressor macrophage primary cell

value: suppressor macrophage

value: primary cell

value: male

value: 24 year

value: Shelly Heimfeld

value: ENCBS117SZU at ENCODE; https://www.encodeproject.org/ENCBS117SZU/

value: Derived from ENCODE donor ENCDO488BDS; https://www.encodeproject.org/ENCDO488BDS/


title: DNase-seq from suppressor macrophage (ENCLB860FRP)

description:
https://www.encodeproject.org/experiments/ENCSR711AQM/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR711AQM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB860FRP
instrument models: Illumina HiSeq 2000,Illumina HiSeq 4000

value: ENCBS381YCP at ENCODE; https://www.encodeproject.org/ENCBS381YCP/


title: DNase-seq from upper lobe of left lung (ENCLB477PPT)

description:
https://www.encodeproject.org/experiments/ENCSR800ADR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR800ADR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB477PPT

source_name: Homo sapiens female adult (61 years) upper lobe of left lung tissue, preserved by flash-freezing

value: upper lobe of left lung

value: tissue

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: 61 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS468BRF at ENCODE; https://www.encodeproject.org/ENCBS468BRF/

value: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/


title: DNase-seq from right forelimb (ENCLB611QCS)

description:
https://www.encodeproject.org/experiments/ENCSR274SDO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR274SDO
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2018-01-29
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB611QCS

source_name: Homo sapiens male embryo (81 days) right forelimb tissue

value: right forelimb

value: right arm

value: embryonic

value: 81 day

value: John Stamatoyannopoulos, UW

value: BDRL

value: ENCBS582SLC at ENCODE; https://www.encodeproject.org/ENCBS582SLC/

value: Derived from ENCODE donor ENCDO184UZW; https://www.encodeproject.org/ENCDO184UZW/


title: DNase-seq from coronary artery (ENCLB585VFH)

description:
https://www.encodeproject.org/experiments/ENCSR060HPL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR060HPL
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB585VFH

source_name: Homo sapiens female adult (53 years) coronary artery tissue

value: coronary artery

value: female

value: adult

value: 53 year

value: Kristin Ardlie

value: ENCBS212IQG at ENCODE; https://www.encodeproject.org/ENCBS212IQG/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB765RJK)

description:
https://www.encodeproject.org/experiments/ENCSR060MJY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR060MJY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB765RJK

source_name: Homo sapiens female adult (90 or above years) dorsolateral prefrontal cortex tissue with mild cognitive impairment

value: dorsolateral prefrontal cortex

value: tissue

value: 90 year or above

value: Rush University

value: ENCBS911DPL at ENCODE; https://www.encodeproject.org/ENCBS911DPL/

value: Derived from ENCODE donor ENCDO660TGP; https://www.encodeproject.org/ENCDO660TGP/


title: DNase-seq from SK-MEL-5 (ENCLB337ZYZ)

description:
https://www.encodeproject.org/experiments/ENCSR000FEK/
***************
biological replicate number: 1
technical replicate number: 1,2
description:
experiment encode accession: ENCSR000FEK
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2016-09-22
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB337ZYZ

source_name: Homo sapiens SK-MEL-5 immortalized cell line

value: cell line

value: 24 year

value: John Stamatoyannopoulos, UW

value: ENCBS518AAA at ENCODE; https://www.encodeproject.org/ENCBS518AAA/

value: Derived from ENCODE donor ENCDO338AAA; https://www.encodeproject.org/ENCDO338AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0527; http://web.expasy.org/cellosaurus/CVCL_0527


title: DNase-seq from head of caudate nucleus (ENCLB178AHW)

description:
https://www.encodeproject.org/experiments/ENCSR271QID/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR271QID
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB178AHW

source_name: Homo sapiens female adult (90 or above years) head of caudate nucleus tissue with mild cognitive impairment

value: head of caudate nucleus

value: female

value: adult

value: ENCBS795XRV at ENCODE; https://www.encodeproject.org/ENCBS795XRV/

value: Derived from ENCODE donor ENCDO153NUY; https://www.encodeproject.org/ENCDO153NUY/


title: DNase-seq from T-cell (ENCLB628UXK)

description:
https://www.encodeproject.org/experiments/ENCSR270JQK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR270JQK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB628UXK

source_name: Homo sapiens female adult (40 years) T-cell primary cell

value: T-cell

value: primary cell

value: 40 year

value: AllCells

value: ENCBS064ZNP at ENCODE; https://www.encodeproject.org/ENCBS064ZNP/

value: Derived from ENCODE donor ENCDO143ACT; https://www.encodeproject.org/ENCDO143ACT/


title: DNase-seq from SK-MEL-5 (ENCLB338ZYZ)

description:
https://www.encodeproject.org/experiments/ENCSR000FEK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR000FEK
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2016-09-22
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB338ZYZ

value: cell line

value: ENCBS519AAA at ENCODE; https://www.encodeproject.org/ENCBS519AAA/


title: TF ChIP-seq from MCF-7 (ENCLB608XPU)

description:
https://www.encodeproject.org/experiments/ENCSR463GOT/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ESR1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR463GOT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR734XLI, ENCSR517FPJ
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB608XPU
size range: 450-650

value: MCF7 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ESR1.

value: breast cancer (adenocarcinoma)

value: 69 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS364ATL at ENCODE; https://www.encodeproject.org/ENCBS364ATL/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: TF ChIP-seq from K562 (ENCLB041PUN)

description:
https://www.encodeproject.org/experiments/ENCSR459FUE/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ERF ChIP-seq on human K562
experiment encode accession: ENCSR459FUE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR781PVO
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB041PUN
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ERF

value: ERF

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ERF.

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Kevin White

value: ENCBS951WCF at ENCODE; https://www.encodeproject.org/ENCBS951WCF/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from HT1080 (ENCLB331ZYZ)

description:
https://www.encodeproject.org/experiments/ENCSR000FDI/
***************
biological replicate number: 1
technical replicate number: 1,2
description:
experiment encode accession: ENCSR000FDI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2015-03-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB331ZYZ

source_name: Homo sapiens HT1080 immortalized cell line

value: cell line

value: epithelial cell line derived from a fibrosarcoma, (PMID:4132053), pseudo-diploid male with a modal chromosome number of 46, numerous chromosome abnormalities

value: 35 year

value: male

value: fibrosarcoma

value: John Stamatoyannopoulos, UW

value: ENCBS512AAA at ENCODE; https://www.encodeproject.org/ENCBS512AAA/

value: Derived from ENCODE donor ENCDO033CRF; https://www.encodeproject.org/ENCDO033CRF/

value: ENCODE dbxrefs Cellosaurus CVCL_0317; http://web.expasy.org/cellosaurus/CVCL_0317


title: DNase-seq from HT1080 (ENCLB332ZYZ)

description:
https://www.encodeproject.org/experiments/ENCSR000FDI/
***************
biological replicate number: 2
technical replicate number: 1,2
description:
experiment encode accession: ENCSR000FDI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2015-03-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB332ZYZ

value: ENCBS513AAA at ENCODE; https://www.encodeproject.org/ENCBS513AAA/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB761USR)

description:
https://www.encodeproject.org/experiments/ENCSR059NIN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR059NIN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB761USR

source_name: Homo sapiens male adult (90 or above years) dorsolateral prefrontal cortex tissue with mild cognitive impairment

value: dorsolateral prefrontal cortex

value: tissue

value: 90 year or above

value: Rush University

value: ENCBS682GGD at ENCODE; https://www.encodeproject.org/ENCBS682GGD/

value: Derived from ENCODE donor ENCDO877NVF; https://www.encodeproject.org/ENCDO877NVF/


title: DNase-seq from upper lobe of left lung (ENCLB965PYB)

description:
https://www.encodeproject.org/experiments/ENCSR058VBM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR058VBM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB965PYB

source_name: Homo sapiens male adult (37 years) upper lobe of left lung tissue

value: upper lobe of left lung

value: adult

value: 37 year

value: Kristin Ardlie

value: ENCBS366CZY at ENCODE; https://www.encodeproject.org/ENCBS366CZY/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: DNase-seq from head of caudate nucleus (ENCLB884MWE)

description:
https://www.encodeproject.org/experiments/ENCSR057GPV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR057GPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB884MWE

value: head of caudate nucleus

value: female

value: John Stamatoyannopoulos, UW

value: ENCBS320VPE at ENCODE; https://www.encodeproject.org/ENCBS320VPE/

value: Derived from ENCODE donor ENCDO880FAU; https://www.encodeproject.org/ENCDO880FAU/


title: DNase-seq from kidney (ENCLB049MNH)

description:
https://www.encodeproject.org/experiments/ENCSR792ZXA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR792ZXA
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-12-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB049MNH
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens embryo (59 days) kidney tissue

value: kidney

value: not collected

value: embryonic

value: 59 day

value: BDRL

value: ENCBS133SJG at ENCODE; https://www.encodeproject.org/ENCBS133SJG/

value: Derived from ENCODE donor ENCDO163CLX; https://www.encodeproject.org/ENCDO163CLX/


title: TF ChIP-seq from K562 (ENCLB431REL)

description:
https://www.encodeproject.org/experiments/ENCSR056VYW/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF174 ChIP-seq on human K562
experiment encode accession: ENCSR056VYW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR863VLO
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB431REL
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF174

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS060FLG at ENCODE; https://www.encodeproject.org/ENCBS060FLG/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from kidney (ENCLB005SRL)

description:
https://www.encodeproject.org/experiments/ENCSR792ZXA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR792ZXA
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-12-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB005SRL
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens female embryo (59 days) kidney tissue

value: tissue

value: female

value: John Stamatoyannopoulos, UW

value: ENCBS536DBJ at ENCODE; https://www.encodeproject.org/ENCBS536DBJ/

value: Derived from ENCODE donor ENCDO065EIP; https://www.encodeproject.org/ENCDO065EIP/


title: TF ChIP-seq from K562 (ENCLB432CTL)

description:
https://www.encodeproject.org/experiments/ENCSR056VYW/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF174 ChIP-seq on human K562
experiment encode accession: ENCSR056VYW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR863VLO
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB432CTL
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: ENCBS760WED at ENCODE; https://www.encodeproject.org/ENCBS760WED/


title: TF ChIP-seq from K562 (ENCLB466YFO)

description:
https://www.encodeproject.org/experiments/ENCSR459FUE/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ERF ChIP-seq on human K562
experiment encode accession: ENCSR459FUE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR781PVO
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB466YFO
size range: 450-650

value: ERF

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ERF.

value: ENCBS471IRT at ENCODE; https://www.encodeproject.org/ENCBS471IRT/


title: DNase-seq from body of pancreas (ENCLB457MXE)

description:
https://www.encodeproject.org/experiments/ENCSR464TKV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR464TKV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB457MXE

source_name: Homo sapiens male adult (54 years) body of pancreas tissue

value: body of pancreas

value: male

value: 54 year

value: Kristin Ardlie

value: ENCBS855ZTO at ENCODE; https://www.encodeproject.org/ENCBS855ZTO/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: DNase-seq from T-helper 1 cell (ENCLB355SZA)

description:
https://www.encodeproject.org/experiments/ENCSR058ELM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR058ELM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB355SZA

source_name: Homo sapiens male adult (30 years) T-helper 1 primary cell

value: T-helper 1 cell

value: primary cell

value: adult

value: 30 year

value: AllCells

value: ENCBS892FWW at ENCODE; https://www.encodeproject.org/ENCBS892FWW/

value: Derived from ENCODE donor ENCDO739OLY; https://www.encodeproject.org/ENCDO739OLY/


title: DNase-seq from heart right ventricle (ENCLB871SZD)

description:
https://www.encodeproject.org/experiments/ENCSR792QQE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR792QQE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB871SZD

source_name: Homo sapiens male adult (54 years) heart right ventricle tissue

value: heart right ventricle

value: tissue

value: ischemic (EF 13 %, LVEDD 7.1; RV severe dilation, severe dysfunction)

value: Michael Snyder, Stanford

value: Shin Lin

value: ENCBS984JWU at ENCODE; https://www.encodeproject.org/ENCBS984JWU/

value: Derived from ENCODE donor ENCDO039RUH; https://www.encodeproject.org/ENCDO039RUH/


title: DNase-seq from adrenal gland (ENCLB826TVQ)

description:
https://www.encodeproject.org/experiments/ENCSR458AOS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR458AOS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB826TVQ

source_name: Homo sapiens male adult (54 years) adrenal gland tissue

value: adrenal gland

value: male

value: 54 year

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS204NZH at ENCODE; https://www.encodeproject.org/ENCBS204NZH/


title: DNase-seq from T-cell (ENCLB662EKM)

description:
https://www.encodeproject.org/experiments/ENCSR457RVC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR457RVC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB662EKM

source_name: Homo sapiens male adult (28 years) T-cell primary cell

value: T-cell

value: primary cell

value: adult

value: 28 year

value: ENCBS680ILX at ENCODE; https://www.encodeproject.org/ENCBS680ILX/

value: Derived from ENCODE donor ENCDO256UFN; https://www.encodeproject.org/ENCDO256UFN/


title: DNase-seq from gastrocnemius medialis (ENCLB599EMK)

description:
https://www.encodeproject.org/experiments/ENCSR791BHE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR791BHE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB599EMK

source_name: Homo sapiens male adult (37 years) gastrocnemius medialis tissue

value: gastrocnemius medialis

value: tissue

value: 37 year

value: ENCBS644RPG at ENCODE; https://www.encodeproject.org/ENCBS644RPG/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: DNase-seq from head of caudate nucleus (ENCLB375EZN)

description:
https://www.encodeproject.org/experiments/ENCSR268GBM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR268GBM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB375EZN

value: head of caudate nucleus

value: female

value: 90 year or above

value: Rush University

value: ENCBS432FDZ at ENCODE; https://www.encodeproject.org/ENCBS432FDZ/

value: Derived from ENCODE donor ENCDO660TGP; https://www.encodeproject.org/ENCDO660TGP/


title: DNase-seq from posterior cingulate gyrus (ENCLB366ILV)

description:
https://www.encodeproject.org/experiments/ENCSR789FJF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR789FJF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB366ILV

source_name: Homo sapiens female adult (87 years) posterior cingulate gyrus tissue

value: posterior cingulate gyrus

value: 87 year

value: John Stamatoyannopoulos, UW

value: ENCBS952APP at ENCODE; https://www.encodeproject.org/ENCBS952APP/

value: Derived from ENCODE donor ENCDO423GGP; https://www.encodeproject.org/ENCDO423GGP/


title: DNase-seq from T-helper 1 cell (ENCLB788MPX)

description:
https://www.encodeproject.org/experiments/ENCSR453RFW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR453RFW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB788MPX

source_name: Homo sapiens male adult (24 years) T-helper 1 primary cell

value: T-helper 1 cell

value: primary cell

value: male

value: adult

value: 24 year

value: AllCells

value: ENCBS673EYZ at ENCODE; https://www.encodeproject.org/ENCBS673EYZ/

value: Derived from ENCODE donor ENCDO786GVO; https://www.encodeproject.org/ENCDO786GVO/