title: DNase-seq from CD4-positive naive resting alpha-beta T cell (ENCLB379QQX)

description:
https://www.encodeproject.org/experiments/ENCSR531AYV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR531AYV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB379QQX

source_name: Homo sapiens male adult (24 years) CD4-positive naive resting alpha-beta T primary cell

value: primary cell

value: adult

value: 24 year

value: John Stamatoyannopoulos, UW

value: ENCBS526DGU at ENCODE; https://www.encodeproject.org/ENCBS526DGU/

value: Derived from ENCODE donor ENCDO786GVO; https://www.encodeproject.org/ENCDO786GVO/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB764IGB)

status: Public on Mar 30 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR351FWN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR351FWN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB764IGB

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens female adult (88 years) dorsolateral prefrontal cortex tissue

value: dorsolateral prefrontal cortex

value: tissue

tag: biosample encode accession

tag: Sex

value: female

tag: dev stage

tag: age

value: 88 year

tag: lab

tag: source

value: Rush University

tag: link

value: ENCBS721WZU at ENCODE; https://www.encodeproject.org/ENCBS721WZU/

value: Derived from ENCODE donor ENCDO669IVL; https://www.encodeproject.org/ENCDO669IVL/


title: DNase-seq from HL-60 (ENCLB826XUW)

description:
https://www.encodeproject.org/experiments/ENCSR889WKL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR889WKL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB826XUW

source_name: Homo sapiens HL-60 cell line

tag: line

value: cell line

tag: health state

value: acute promyelocytic leukemia

value: 36 year

value: ATCC

value: ENCBS851EOC at ENCODE; https://www.encodeproject.org/ENCBS851EOC/

value: Derived from ENCODE donor ENCDO000AAM; https://www.encodeproject.org/ENCDO000AAM/


title: TF ChIP-seq from K562 (ENCLB647YZP)

description:
https://www.encodeproject.org/experiments/ENCSR350GZC/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF561 ChIP-seq on human K562
experiment encode accession: ENCSR350GZC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR270QJI
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB647YZP
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF561

tag: antibody

tag: description

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF561.

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS308YWA at ENCODE; https://www.encodeproject.org/ENCBS308YWA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from effector CD4-positive, alpha-beta T cell (ENCLB495PWH)

description:
https://www.encodeproject.org/experiments/ENCSR525VCH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR525VCH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB495PWH

source_name: Homo sapiens female adult (25 years) effector CD4-positive, alpha-beta T primary cell

value: primary cell

value: female

value: 25 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS237LZY at ENCODE; https://www.encodeproject.org/ENCBS237LZY/

value: Derived from ENCODE donor ENCDO011KGM; https://www.encodeproject.org/ENCDO011KGM/


title: DNase-seq from T-cell (ENCLB816HUK)

description:
https://www.encodeproject.org/experiments/ENCSR354SDH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR354SDH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB816HUK

source_name: Homo sapiens female adult (33 years) T-cell primary cell

value: T-cell

value: 33 year

value: ENCBS538MMT at ENCODE; https://www.encodeproject.org/ENCBS538MMT/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: DNase-seq from posterior cingulate gyrus (ENCLB559XZK)

description:
https://www.encodeproject.org/experiments/ENCSR885ZBV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR885ZBV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB559XZK

source_name: Homo sapiens female adult (90 or above years) posterior cingulate gyrus tissue with mild cognitive impairment

value: posterior cingulate gyrus

value: tissue

value: adult

value: 90 year or above

value: Rush University

value: ENCBS017XFJ at ENCODE; https://www.encodeproject.org/ENCBS017XFJ/

value: Derived from ENCODE donor ENCDO170MSG; https://www.encodeproject.org/ENCDO170MSG/


title: TF ChIP-seq from K562 (ENCLB157YYI)

description:
https://www.encodeproject.org/experiments/ENCSR883UGG/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF445 ChIP-seq on human K562
experiment encode accession: ENCSR883UGG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR178RBD, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB157YYI
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF445

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS369UNZ at ENCODE; https://www.encodeproject.org/ENCBS369UNZ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB945VEJ)

description:
https://www.encodeproject.org/experiments/ENCSR350GZC/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF561 ChIP-seq on human K562
experiment encode accession: ENCSR350GZC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR270QJI
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB945VEJ
size range: 450-650

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF561.

value: ENCBS870PZB at ENCODE; https://www.encodeproject.org/ENCBS870PZB/


title: DNase-seq from head of caudate nucleus (ENCLB996GKJ)

description:
https://www.encodeproject.org/experiments/ENCSR888ZIZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR888ZIZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB996GKJ

source_name: Homo sapiens male adult (85 years) head of caudate nucleus tissue

value: head of caudate nucleus

value: male

value: 85 year

value: John Stamatoyannopoulos, UW

value: ENCBS179LSD at ENCODE; https://www.encodeproject.org/ENCBS179LSD/

value: Derived from ENCODE donor ENCDO953KHI; https://www.encodeproject.org/ENCDO953KHI/


title: TF ChIP-seq from K562 (ENCLB211RMS)

description:
https://www.encodeproject.org/experiments/ENCSR883UGG/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF445 ChIP-seq on human K562
experiment encode accession: ENCSR883UGG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR178RBD, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB211RMS
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: adult

value: ENCBS185AZG at ENCODE; https://www.encodeproject.org/ENCBS185AZG/


title: DNase-seq from HAP-1 (ENCLB523BYY)

description:
https://www.encodeproject.org/experiments/ENCSR895KTN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR895KTN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB523BYY

source_name: Homo sapiens HAP-1 cell line

value: cell line

value: 44 year

value: Haplogen Genomics

value: ENCBS547QLC at ENCODE; https://www.encodeproject.org/ENCBS547QLC/

value: Derived from ENCODE donor ENCDO763VKT; https://www.encodeproject.org/ENCDO763VKT/


title: DNase-seq from head of caudate nucleus (ENCLB701HDH)

description:
https://www.encodeproject.org/experiments/ENCSR881FBS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR881FBS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB701HDH

source_name: Homo sapiens female adult (88 years) head of caudate nucleus tissue

value: tissue

value: female

value: 88 year

value: Rush University

value: ENCBS260MJS at ENCODE; https://www.encodeproject.org/ENCBS260MJS/

value: Derived from ENCODE donor ENCDO669IVL; https://www.encodeproject.org/ENCDO669IVL/


title: DNase-seq from lung (ENCLB594BSZ)

description:
https://www.encodeproject.org/experiments/ENCSR141IUS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR141IUS
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-12-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB594BSZ
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens female embryo (76 days) lung tissue

value: lung

value: embryonic

value: 76 day

value: BDRL

value: ENCBS693GFV at ENCODE; https://www.encodeproject.org/ENCBS693GFV/

value: Derived from ENCODE donor ENCDO237NAG; https://www.encodeproject.org/ENCDO237NAG/


title: DNase-seq from head of caudate nucleus (ENCLB537BID)

description:
https://www.encodeproject.org/experiments/ENCSR524QPZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR524QPZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB537BID

source_name: Homo sapiens female adult (78 years) head of caudate nucleus tissue with mild cognitive impairment

value: head of caudate nucleus

value: adult

value: 78 year

value: John Stamatoyannopoulos, UW

value: ENCBS852QLF at ENCODE; https://www.encodeproject.org/ENCBS852QLF/

value: Derived from ENCODE donor ENCDO203GSG; https://www.encodeproject.org/ENCDO203GSG/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB020IPK)

description:
https://www.encodeproject.org/experiments/ENCSR879XUH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR879XUH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB020IPK

source_name: Homo sapiens female adult (90 or above years) dorsolateral prefrontal cortex tissue

value: dorsolateral prefrontal cortex

value: tissue

value: female

value: 90 year or above

value: ENCBS005EPJ at ENCODE; https://www.encodeproject.org/ENCBS005EPJ/

value: Derived from ENCODE donor ENCDO250PFZ; https://www.encodeproject.org/ENCDO250PFZ/


title: TF ChIP-seq from HepG2 (ENCLB178EWH)

description:
https://www.encodeproject.org/experiments/ENCSR697WMX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR697WMX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB178EWH
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting HIVEP1

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS423FZZ at ENCODE; https://www.encodeproject.org/ENCBS423FZZ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from T-cell (ENCLB676MZN)

description:
https://www.encodeproject.org/experiments/ENCSR342OGI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR342OGI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB676MZN

source_name: Homo sapiens male adult (27 years) T-cell primary cell

value: T-cell

value: primary cell

value: adult

value: 27 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS085ZEK at ENCODE; https://www.encodeproject.org/ENCBS085ZEK/

value: Derived from ENCODE donor ENCDO783NZG; https://www.encodeproject.org/ENCDO783NZG/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB657OFZ)

description:
https://www.encodeproject.org/experiments/ENCSR880CUB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR880CUB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB657OFZ

source_name: Homo sapiens male adult (83 years) dorsolateral prefrontal cortex tissue

value: dorsolateral prefrontal cortex

value: tissue

value: 83 year

value: Rush University

value: ENCBS377HAS at ENCODE; https://www.encodeproject.org/ENCBS377HAS/

value: Derived from ENCODE donor ENCDO592ZWW; https://www.encodeproject.org/ENCDO592ZWW/


title: TF ChIP-seq from HepG2 (ENCLB910PSG)

description:
https://www.encodeproject.org/experiments/ENCSR697WMX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR697WMX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB910PSG
fragmentation methods: sonication (generic)

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS589RNF at ENCODE; https://www.encodeproject.org/ENCBS589RNF/


title: DNase-seq from cardiac septum (ENCLB149PAK)

description:
https://www.encodeproject.org/experiments/ENCSR524QBS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR524QBS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB149PAK

source_name: Homo sapiens female adult (41 years) cardiac septum tissue

value: cardiac septum

value: female

value: DM:no; HTN:no; CAD:no

value: adult

value: 41 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS885EDT at ENCODE; https://www.encodeproject.org/ENCBS885EDT/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: DNase-seq from SJSA1 (ENCLB572FWC)

description:
https://www.encodeproject.org/experiments/ENCSR520WTV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR520WTV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB572FWC

source_name: Homo sapiens SJSA1 cell line

value: cell line

value: 19 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS115LRV at ENCODE; https://www.encodeproject.org/ENCBS115LRV/

value: Derived from ENCODE donor ENCDO197NLG; https://www.encodeproject.org/ENCDO197NLG/


title: TF ChIP-seq from K562 (ENCLB447LJT)

description:
https://www.encodeproject.org/experiments/ENCSR879KXD/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-RAD21 ChIP-seq on human K562
experiment encode accession: ENCSR879KXD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR093QJW, ENCSR328FYU
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB447LJT
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting RAD21

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to RAD21.

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Kevin White

value: ENCBS810HFC at ENCODE; https://www.encodeproject.org/ENCBS810HFC/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB093HUL)

description:
https://www.encodeproject.org/experiments/ENCSR879KXD/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-RAD21 ChIP-seq on human K562
experiment encode accession: ENCSR879KXD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR093QJW, ENCSR328FYU
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB093HUL
size range: 450-650

value: female

value: adult

value: ENCBS260FUU at ENCODE; https://www.encodeproject.org/ENCBS260FUU/


title: TF ChIP-seq from HepG2 (ENCLB255WAE)

description:
https://www.encodeproject.org/experiments/ENCSR695SLS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR695SLS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB255WAE
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF510

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS256RRW at ENCODE; https://www.encodeproject.org/ENCBS256RRW/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from SJSA1 (ENCLB918AGM)

description:
https://www.encodeproject.org/experiments/ENCSR520WTV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR520WTV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB918AGM

value: cell line

value: 19 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS419YNT at ENCODE; https://www.encodeproject.org/ENCBS419YNT/

value: Derived from ENCODE donor ENCDO197NLG; https://www.encodeproject.org/ENCDO197NLG/


title: TF ChIP-seq from HepG2 (ENCLB733EMF)

description:
https://www.encodeproject.org/experiments/ENCSR695SLS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR695SLS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB733EMF
fragmentation methods: sonication (generic)

value: ENCBS494DVK at ENCODE; https://www.encodeproject.org/ENCBS494DVK/


title: TF ChIP-seq from HepG2 (ENCLB208RBI)

description:
https://www.encodeproject.org/experiments/ENCSR690FIA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR690FIA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB208RBI
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting EED

value: EED

value: ENCBS476ADM at ENCODE; https://www.encodeproject.org/ENCBS476ADM/


title: TF ChIP-seq from HepG2 (ENCLB528NSB)

description:
https://www.encodeproject.org/experiments/ENCSR690FIA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR690FIA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB528NSB
fragmentation methods: sonication (generic)

value: male

value: ENCBS955RZH at ENCODE; https://www.encodeproject.org/ENCBS955RZH/


title: TF ChIP-seq from HepG2 (ENCLB139HIX)

description:
https://www.encodeproject.org/experiments/ENCSR673GDQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR673GDQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR257XAX
encode release date: 2021-02-25
lab: Richard Myers, HAIB
library encode accession: ENCLB139HIX
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF441

value: hepatocellular carcinoma

value: child

value: ENCBS854PAR at ENCODE; https://www.encodeproject.org/ENCBS854PAR/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB601XMQ)

description:
https://www.encodeproject.org/experiments/ENCSR340XQX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR340XQX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB601XMQ

source_name: Homo sapiens female adult (90 or above years) dorsolateral prefrontal cortex tissue with Alzheimer's disease

value: dorsolateral prefrontal cortex

value: tissue

value: female

value: adult

value: 90 year or above

value: Rush University

value: ENCBS673RPA at ENCODE; https://www.encodeproject.org/ENCBS673RPA/

value: Derived from ENCODE donor ENCDO865EMM; https://www.encodeproject.org/ENCDO865EMM/


title: DNase-seq from T-cell (ENCLB384UEI)

description:
https://www.encodeproject.org/experiments/ENCSR140KPO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR140KPO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB384UEI

source_name: Homo sapiens female adult (33 years) T-cell primary cell

value: T-cell

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS773PND at ENCODE; https://www.encodeproject.org/ENCBS773PND/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: DNase-seq from ovary (ENCLB232JBL)

description:
https://www.encodeproject.org/experiments/ENCSR138UGH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR138UGH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB232JBL

source_name: Homo sapiens female adult (61 years) ovary tissue, preserved by flash-freezing

value: ovary

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: 61 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS173BRC at ENCODE; https://www.encodeproject.org/ENCBS173BRC/

value: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/


title: TF ChIP-seq from HepG2 (ENCLB516ZTT)

description:
https://www.encodeproject.org/experiments/ENCSR673GDQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR673GDQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR257XAX
encode release date: 2021-02-25
lab: Richard Myers, HAIB
library encode accession: ENCLB516ZTT
fragmentation methods: sonication (generic)

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS600YUS at ENCODE; https://www.encodeproject.org/ENCBS600YUS/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB314UNW)

description:
https://www.encodeproject.org/experiments/ENCSR670UEX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR670UEX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB314UNW
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF710

value: ENCBS164MXB at ENCODE; https://www.encodeproject.org/ENCBS164MXB/


title: TF ChIP-seq from HepG2 (ENCLB233HXA)

description:
https://www.encodeproject.org/experiments/ENCSR670UEX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR670UEX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB233HXA
fragmentation methods: sonication (generic)

value: ENCBS075BVL at ENCODE; https://www.encodeproject.org/ENCBS075BVL/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB273WAN)

description:
https://www.encodeproject.org/experiments/ENCSR346GIP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR346GIP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB273WAN

source_name: Homo sapiens male adult (42 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: adult

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS602VIR at ENCODE; https://www.encodeproject.org/ENCBS602VIR/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: TF ChIP-seq from SK-N-SH (ENCLB835PSC)

description:
https://www.encodeproject.org/experiments/ENCSR667WDR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on SK-N-SH
experiment encode accession: ENCSR667WDR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR697UDH
encode release date: 2020-08-14
lab: Richard Myers, HAIB
library encode accession: ENCLB835PSC
fragmentation methods: sonication (generic)

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting FOXJ3

value: SK-N-SH

value: cell line

value: female

value: Metastatic neuroblastoma from bone marrow

value: 4 year

value: ENCBS848BQJ at ENCODE; https://www.encodeproject.org/ENCBS848BQJ/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: DNase-seq from transverse colon (ENCLB391UOD)

description:
https://www.encodeproject.org/experiments/ENCSR340MRJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR340MRJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB391UOD

source_name: Homo sapiens male adult (54 years) transverse colon tissue

value: transverse colon

value: tissue

value: male

value: 54 year

value: Kristin Ardlie

value: ENCBS420CTG at ENCODE; https://www.encodeproject.org/ENCBS420CTG/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: TF ChIP-seq from SK-N-SH (ENCLB017WHA)

description:
https://www.encodeproject.org/experiments/ENCSR667WDR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on SK-N-SH
experiment encode accession: ENCSR667WDR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR697UDH
encode release date: 2020-08-14
lab: Richard Myers, HAIB
library encode accession: ENCLB017WHA
fragmentation methods: sonication (generic)

value: child

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS088WDH at ENCODE; https://www.encodeproject.org/ENCBS088WDH/


title: DNase-seq from head of caudate nucleus (ENCLB919DRN)

description:
https://www.encodeproject.org/experiments/ENCSR339TVH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR339TVH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB919DRN

source_name: Homo sapiens female adult (90 or above years) head of caudate nucleus tissue with mild cognitive impairment

value: head of caudate nucleus

value: adult

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS603NEV at ENCODE; https://www.encodeproject.org/ENCBS603NEV/

value: Derived from ENCODE donor ENCDO853KFT; https://www.encodeproject.org/ENCDO853KFT/


title: TF ChIP-seq from HepG2 (ENCLB312URP)

description:
https://www.encodeproject.org/experiments/ENCSR664FGR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR664FGR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB312URP
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting GPBP1L1

value: cell line

value: hepatocellular carcinoma

value: 15 year

value: ENCBS715QFI at ENCODE; https://www.encodeproject.org/ENCBS715QFI/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB527JRH)

description:
https://www.encodeproject.org/experiments/ENCSR664FGR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR664FGR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB527JRH
fragmentation methods: sonication (generic)

value: male

value: ENCBS058TYU at ENCODE; https://www.encodeproject.org/ENCBS058TYU/


title: TF ChIP-seq from HepG2 (ENCLB581KRK)

description:
https://www.encodeproject.org/experiments/ENCSR663CTC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR663CTC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR621FPD
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB581KRK
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF572

value: child

value: Richard Myers, HAIB

value: ENCBS118TDL at ENCODE; https://www.encodeproject.org/ENCBS118TDL/


title: DNase-seq from head of caudate nucleus (ENCLB556CFW)

description:
https://www.encodeproject.org/experiments/ENCSR879EVD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR879EVD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB556CFW

source_name: Homo sapiens male adult (83 years) head of caudate nucleus tissue

value: head of caudate nucleus

value: tissue

value: 83 year

value: ENCBS919NHL at ENCODE; https://www.encodeproject.org/ENCBS919NHL/

value: Derived from ENCODE donor ENCDO736YJH; https://www.encodeproject.org/ENCDO736YJH/


title: TF ChIP-seq from HepG2 (ENCLB388LYK)

description:
https://www.encodeproject.org/experiments/ENCSR663CTC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR663CTC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR621FPD
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB388LYK
fragmentation methods: sonication (generic)

value: Richard Myers

value: ENCBS830QOW at ENCODE; https://www.encodeproject.org/ENCBS830QOW/


title: DNase-seq from pancreas (ENCLB572LGI)

description:
https://www.encodeproject.org/experiments/ENCSR338NEI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR338NEI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB572LGI

source_name: Homo sapiens female adult (41 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: female

value: DM:no; HTN:no; CAD:no

value: adult

value: 41 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS360BGS at ENCODE; https://www.encodeproject.org/ENCBS360BGS/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: TF ChIP-seq from HepG2 (ENCLB987ZPB)

description:
https://www.encodeproject.org/experiments/ENCSR661IKO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR661IKO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR776XHE
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB987ZPB
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting TRAFD1

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: ENCBS224EJV at ENCODE; https://www.encodeproject.org/ENCBS224EJV/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB833YVP)

description:
https://www.encodeproject.org/experiments/ENCSR136OFY/
***************
biological replicate number: 1
technical replicate number: 1
description: HepG2 immortalized cell line stably expressing C-terminal eGFP-NR2F1 fusion protein.
experiment encode accession: ENCSR136OFY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR387ACQ, ENCSR592WMK
encode release date: 2020-07-09
lab: Michael Snyder, Stanford
library encode accession: ENCLB833YVP
size range: 450-650

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting NR2F1

value: HepG2 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to NR2F1.

value: Michael Snyder

value: ENCBS507WIU at ENCODE; https://www.encodeproject.org/ENCBS507WIU/


title: TF ChIP-seq from HepG2 (ENCLB428AJH)

description:
https://www.encodeproject.org/experiments/ENCSR661IKO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR661IKO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR776XHE
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB428AJH
fragmentation methods: sonication (generic)

value: Richard Myers

value: ENCBS691VMA at ENCODE; https://www.encodeproject.org/ENCBS691VMA/


title: TF ChIP-seq from HepG2 (ENCLB256AIV)

description:
https://www.encodeproject.org/experiments/ENCSR136OFY/
***************
biological replicate number: 2
technical replicate number: 1
description: HepG2 immortalized cell line stably expressing C-terminal eGFP-NR2F1 fusion protein.
experiment encode accession: ENCSR136OFY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR387ACQ, ENCSR592WMK
encode release date: 2020-07-09
lab: Michael Snyder, Stanford
library encode accession: ENCLB256AIV
size range: 450-650

value: Michael Snyder, Stanford

value: ENCBS387MWT at ENCODE; https://www.encodeproject.org/ENCBS387MWT/


title: TF ChIP-seq from HepG2 (ENCLB092KYR)

description:
https://www.encodeproject.org/experiments/ENCSR654PQY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR654PQY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR388OQM
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB092KYR
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF616

value: ENCBS256HTC at ENCODE; https://www.encodeproject.org/ENCBS256HTC/


title: DNase-seq from head of caudate nucleus (ENCLB041YQY)

description:
https://www.encodeproject.org/experiments/ENCSR137FWW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR137FWW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB041YQY

source_name: Homo sapiens male adult (90 or above years) head of caudate nucleus tissue

value: head of caudate nucleus

value: tissue

value: adult

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS582XXP at ENCODE; https://www.encodeproject.org/ENCBS582XXP/

value: Derived from ENCODE donor ENCDO607HHC; https://www.encodeproject.org/ENCDO607HHC/


title: TF ChIP-seq from HepG2 (ENCLB460OYN)

description:
https://www.encodeproject.org/experiments/ENCSR647PSR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR647PSR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB460OYN
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF687

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: ENCBS144WIQ at ENCODE; https://www.encodeproject.org/ENCBS144WIQ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB042FMO)

description:
https://www.encodeproject.org/experiments/ENCSR647PSR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR647PSR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB042FMO
fragmentation methods: sonication (generic)

value: Richard Myers

value: ENCBS507UZQ at ENCODE; https://www.encodeproject.org/ENCBS507UZQ/


title: TF ChIP-seq from HepG2 (ENCLB969NRP)

description:
https://www.encodeproject.org/experiments/ENCSR644WQN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR644WQN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB969NRP
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF556

value: ENCBS184KON at ENCODE; https://www.encodeproject.org/ENCBS184KON/


title: TF ChIP-seq from HepG2 (ENCLB070ZBC)

description:
https://www.encodeproject.org/experiments/ENCSR644WQN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR644WQN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB070ZBC
fragmentation methods: sonication (generic)

value: ENCBS998IYT at ENCODE; https://www.encodeproject.org/ENCBS998IYT/


title: TF ChIP-seq from HepG2 (ENCLB917JYN)

description:
https://www.encodeproject.org/experiments/ENCSR338DUC/
***************
biological replicate number: 1
technical replicate number: 1
description: HepG2 immortalized cell line stably expressing C-terminal eGFP-RAD21 fusion protein.
experiment encode accession: ENCSR338DUC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR032BUQ, ENCSR592WMK
encode release date: 2020-07-09
lab: Michael Snyder, Stanford
library encode accession: ENCLB917JYN
size range: 450-650

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting RAD21

value: HepG2 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to RAD21.

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS390CJI at ENCODE; https://www.encodeproject.org/ENCBS390CJI/


title: ATAC-seq from GM12878 (ENCLB873CZV)

description:
https://www.encodeproject.org/experiments/ENCSR637XSC/
***************
biological replicate number: 3
technical replicate number: 1
description: ATAC-seq on human cell line GM12878
experiment encode accession: ENCSR637XSC
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB873CZV
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens GM12878 cell line

value: female

value: unknown

value: adult

value: ATCC

value: ENCBS737CLB at ENCODE; https://www.encodeproject.org/ENCBS737CLB/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/


title: TF ChIP-seq from HepG2 (ENCLB427KSJ)

description:
https://www.encodeproject.org/experiments/ENCSR635SKD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR635SKD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB427KSJ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting NFATC3

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: ENCBS206XOV at ENCODE; https://www.encodeproject.org/ENCBS206XOV/


title: TF ChIP-seq from HepG2 (ENCLB046CEV)

description:
https://www.encodeproject.org/experiments/ENCSR633HRJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR633HRJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB046CEV
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting HNF1A

value: Richard Myers

value: ENCBS605QKY at ENCODE; https://www.encodeproject.org/ENCBS605QKY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from head of caudate nucleus (ENCLB373UUP)

description:
https://www.encodeproject.org/experiments/ENCSR134IUJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR134IUJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB373UUP

source_name: Homo sapiens female adult (90 or above years) head of caudate nucleus tissue with Alzheimer's disease

value: head of caudate nucleus

value: tissue

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS094UER at ENCODE; https://www.encodeproject.org/ENCBS094UER/

value: Derived from ENCODE donor ENCDO470GFA; https://www.encodeproject.org/ENCDO470GFA/


title: TF ChIP-seq from HepG2 (ENCLB850GKD)

description:
https://www.encodeproject.org/experiments/ENCSR654PQY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR654PQY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR388OQM
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB850GKD
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS503HVJ at ENCODE; https://www.encodeproject.org/ENCBS503HVJ/


title: DNase-seq from gastrocnemius medialis (ENCLB935MQI)

description:
https://www.encodeproject.org/experiments/ENCSR520BAD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR520BAD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB935MQI

source_name: Homo sapiens male adult (54 years) gastrocnemius medialis tissue

value: gastrocnemius medialis

value: male

value: adult

value: 54 year

value: Kristin Ardlie

value: ENCBS078FQL at ENCODE; https://www.encodeproject.org/ENCBS078FQL/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ATAC-seq from GM12878 (ENCLB802IWU)

description:
https://www.encodeproject.org/experiments/ENCSR637XSC/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line GM12878
experiment encode accession: ENCSR637XSC
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB802IWU
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: female

value: unknown

value: Michael Snyder, Stanford

value: ATCC

value: ENCBS836FXC at ENCODE; https://www.encodeproject.org/ENCBS836FXC/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/


title: TF ChIP-seq from HepG2 (ENCLB216MXN)

description:
https://www.encodeproject.org/experiments/ENCSR633HRJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR633HRJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB216MXN
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS066ARB at ENCODE; https://www.encodeproject.org/ENCBS066ARB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB694NKW)

description:
https://www.encodeproject.org/experiments/ENCSR635SKD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR635SKD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB694NKW
fragmentation methods: sonication (generic)

value: cell line

value: male

value: ENCBS023DGD at ENCODE; https://www.encodeproject.org/ENCBS023DGD/


title: TF ChIP-seq from HepG2 (ENCLB764XIS)

description:
https://www.encodeproject.org/experiments/ENCSR625XAV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR625XAV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB764XIS
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZBTB8A

value: ENCBS975BGX at ENCODE; https://www.encodeproject.org/ENCBS975BGX/


title: TF ChIP-seq from HepG2 (ENCLB405PLM)

description:
https://www.encodeproject.org/experiments/ENCSR625XAV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR625XAV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB405PLM
fragmentation methods: sonication (generic)

value: ENCBS397HXL at ENCODE; https://www.encodeproject.org/ENCBS397HXL/


title: ATAC-seq from stomach (ENCLB361UQY)

description:
https://www.encodeproject.org/experiments/ENCSR337UIU/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human stomach
experiment encode accession: ENCSR337UIU
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB361UQY
size range: 150-250

source_name: Homo sapiens stomach tissue female adult (53 years)

value: stomach

value: tissue

value: female

value: 53 year

value: adult

value: ENCBS296KUN at ENCODE; https://www.encodeproject.org/ENCBS296KUN/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: DNase-seq from T-cell (ENCLB980CSK)

description:
https://www.encodeproject.org/experiments/ENCSR878ITC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR878ITC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB980CSK

source_name: Homo sapiens male adult (21 years) T-cell primary cell

value: T-cell

value: primary cell

value: 21 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS166ZOP at ENCODE; https://www.encodeproject.org/ENCBS166ZOP/

value: Derived from ENCODE donor ENCDO865QXP; https://www.encodeproject.org/ENCDO865QXP/


title: TF ChIP-seq from HepG2 (ENCLB667EMF)

description:
https://www.encodeproject.org/experiments/ENCSR622AMZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR622AMZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB667EMF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF761

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS285MLE at ENCODE; https://www.encodeproject.org/ENCBS285MLE/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB449USQ)

description:
https://www.encodeproject.org/experiments/ENCSR621PAN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR621PAN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB449USQ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting HINFP

value: HINFP

value: ENCBS491EYB at ENCODE; https://www.encodeproject.org/ENCBS491EYB/


title: TF ChIP-seq from K562 (ENCLB123MJK)

description:
https://www.encodeproject.org/experiments/ENCSR873LYH/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-MLX ChIP-seq on human K562
experiment encode accession: ENCSR873LYH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR506DBU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB123MJK
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting MLX

value: MLX

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to MLX.

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS006IGG at ENCODE; https://www.encodeproject.org/ENCBS006IGG/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from GM12878 (ENCLB792FPR)

description:
https://www.encodeproject.org/experiments/ENCSR637XSC/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line GM12878
experiment encode accession: ENCSR637XSC
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB792FPR
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: cell line

value: unknown

value: ATCC

value: ENCBS911HVB at ENCODE; https://www.encodeproject.org/ENCBS911HVB/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB619LRZ)

description:
https://www.encodeproject.org/experiments/ENCSR134BSY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR134BSY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB619LRZ

source_name: Homo sapiens female adult (33 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS026BZC at ENCODE; https://www.encodeproject.org/ENCBS026BZC/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: TF ChIP-seq from HepG2 (ENCLB753QRM)

description:
https://www.encodeproject.org/experiments/ENCSR620DBD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR620DBD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB753QRM
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZFP14

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS874HML at ENCODE; https://www.encodeproject.org/ENCBS874HML/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB048WXW)

description:
https://www.encodeproject.org/experiments/ENCSR338DUC/
***************
biological replicate number: 2
technical replicate number: 1
description: HepG2 immortalized cell line stably expressing C-terminal eGFP-RAD21 fusion protein.
experiment encode accession: ENCSR338DUC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR032BUQ, ENCSR592WMK
encode release date: 2020-07-09
lab: Michael Snyder, Stanford
library encode accession: ENCLB048WXW
size range: 450-650

value: cell line

value: HepG2 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to RAD21.

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS828BFU at ENCODE; https://www.encodeproject.org/ENCBS828BFU/


title: TF ChIP-seq from HepG2 (ENCLB287MZM)

description:
https://www.encodeproject.org/experiments/ENCSR620DBD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR620DBD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB287MZM
fragmentation methods: sonication (generic)

value: ENCBS795ZUG at ENCODE; https://www.encodeproject.org/ENCBS795ZUG/


title: TF ChIP-seq from HepG2 (ENCLB172QIU)

description:
https://www.encodeproject.org/experiments/ENCSR621PAN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR621PAN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB172QIU
fragmentation methods: sonication (generic)

value: HINFP

value: ENCBS258CMW at ENCODE; https://www.encodeproject.org/ENCBS258CMW/


title: TF ChIP-seq from HepG2 (ENCLB675BQK)

description:
https://www.encodeproject.org/experiments/ENCSR613RDS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR613RDS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB675BQK
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF619

value: ENCBS481YXQ at ENCODE; https://www.encodeproject.org/ENCBS481YXQ/


title: TF ChIP-seq from HepG2 (ENCLB385ZOS)

description:
https://www.encodeproject.org/experiments/ENCSR613RDS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR613RDS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB385ZOS
fragmentation methods: sonication (generic)

value: male

value: ENCBS627VYZ at ENCODE; https://www.encodeproject.org/ENCBS627VYZ/


title: TF ChIP-seq from K562 (ENCLB053WII)

description:
https://www.encodeproject.org/experiments/ENCSR873LYH/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-MLX ChIP-seq on human K562
experiment encode accession: ENCSR873LYH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR506DBU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB053WII
size range: 450-650

value: MLX

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to MLX.

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Kevin White

value: ENCBS715SXA at ENCODE; https://www.encodeproject.org/ENCBS715SXA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB530YGV)

description:
https://www.encodeproject.org/experiments/ENCSR608XRC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR608XRC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB530YGV
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF526

value: cell line

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS409CEV at ENCODE; https://www.encodeproject.org/ENCBS409CEV/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB002OTG)

description:
https://www.encodeproject.org/experiments/ENCSR608XRC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR608XRC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB002OTG
fragmentation methods: sonication (generic)

value: male

value: ENCBS000QCH at ENCODE; https://www.encodeproject.org/ENCBS000QCH/


title: TF ChIP-seq from HepG2 (ENCLB565GJV)

description:
https://www.encodeproject.org/experiments/ENCSR612XVQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR612XVQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB565GJV
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting PHF20

value: ENCBS762DLY at ENCODE; https://www.encodeproject.org/ENCBS762DLY/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB611CQB)

description:
https://www.encodeproject.org/experiments/ENCSR133QZB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR133QZB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB611CQB

source_name: Homo sapiens female adult (33 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: primary cell

value: female

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS478EFI at ENCODE; https://www.encodeproject.org/ENCBS478EFI/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: TF ChIP-seq from HepG2 (ENCLB458JFM)

description:
https://www.encodeproject.org/experiments/ENCSR606LDL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR606LDL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR776XHE
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB458JFM
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting DNMT1

value: cell line

value: hepatocellular carcinoma

value: child

value: ENCBS393QMF at ENCODE; https://www.encodeproject.org/ENCBS393QMF/


title: TF ChIP-seq from HepG2 (ENCLB835IVU)

description:
https://www.encodeproject.org/experiments/ENCSR607XFI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR607XFI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB835IVU
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting CTCF

value: CTCF

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS243KCX at ENCODE; https://www.encodeproject.org/ENCBS243KCX/


title: DNase-seq from kidney (ENCLB704GMQ)

description:
https://www.encodeproject.org/experiments/ENCSR873ANE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR873ANE
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-12-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB704GMQ
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens male embryo (76 days) kidney tissue

value: kidney

value: tissue

value: male

value: embryonic

value: 76 day

value: BDRL

value: ENCBS384TUR at ENCODE; https://www.encodeproject.org/ENCBS384TUR/

value: Derived from ENCODE donor ENCDO647EYG; https://www.encodeproject.org/ENCDO647EYG/


title: TF ChIP-seq from HepG2 (ENCLB503DFM)

description:
https://www.encodeproject.org/experiments/ENCSR622AMZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR622AMZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB503DFM
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS041AKZ at ENCODE; https://www.encodeproject.org/ENCBS041AKZ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from placenta (ENCLB205EWZ)

description:
https://www.encodeproject.org/experiments/ENCSR336RGT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR336RGT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB205EWZ

source_name: Homo sapiens male embryo placenta tissue

value: placenta

value: unknown

value: John Stamatoyannopoulos, UW

value: John Stamatoyannopoulos

value: ENCBS174YHQ at ENCODE; https://www.encodeproject.org/ENCBS174YHQ/

value: Derived from ENCODE donor ENCDO442GWY; https://www.encodeproject.org/ENCDO442GWY/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB203OOC)

description:
https://www.encodeproject.org/experiments/ENCSR518WRP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR518WRP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB203OOC

source_name: Homo sapiens female adult (78 years) dorsolateral prefrontal cortex tissue

value: dorsolateral prefrontal cortex

value: female

value: adult

value: 78 year

value: Rush University

value: ENCBS162GPR at ENCODE; https://www.encodeproject.org/ENCBS162GPR/

value: Derived from ENCODE donor ENCDO236YSH; https://www.encodeproject.org/ENCDO236YSH/


title: DNase-seq from kidney (ENCLB759USM)

description:
https://www.encodeproject.org/experiments/ENCSR873ANE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR873ANE
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-12-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB759USM
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens female embryo (76 days) kidney tissue

value: kidney

value: tissue

value: embryonic

value: 76 day

value: BDRL

value: ENCBS669IAZ at ENCODE; https://www.encodeproject.org/ENCBS669IAZ/

value: Derived from ENCODE donor ENCDO237NAG; https://www.encodeproject.org/ENCDO237NAG/


title: TF ChIP-seq from HepG2 (ENCLB244AZX)

description:
https://www.encodeproject.org/experiments/ENCSR606LDL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR606LDL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR776XHE
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB244AZX
fragmentation methods: sonication (generic)

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS374OML at ENCODE; https://www.encodeproject.org/ENCBS374OML/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from K562 (ENCLB931OXO)

description:
https://www.encodeproject.org/experiments/ENCSR335SUD/
***************
biological replicate number: 1
technical replicate number: 2
description: eGFP-ZNF436 ChIP-seq on human K562
experiment encode accession: ENCSR335SUD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR695PSG, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB931OXO
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF436

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF436.

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS524VWM at ENCODE; https://www.encodeproject.org/ENCBS524VWM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB290XQO)

description:
https://www.encodeproject.org/experiments/ENCSR335SUD/
***************
biological replicate number: 2
technical replicate number: 2
description: eGFP-ZNF436 ChIP-seq on human K562
experiment encode accession: ENCSR335SUD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR695PSG, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB290XQO
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: ENCBS991EMK at ENCODE; https://www.encodeproject.org/ENCBS991EMK/


title: DNase-seq from head of caudate nucleus (ENCLB764UIX)

description:
https://www.encodeproject.org/experiments/ENCSR516RTV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR516RTV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB764UIX

source_name: Homo sapiens female adult (90 or above years) head of caudate nucleus tissue with Cognitive impairment

value: head of caudate nucleus

value: tissue

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS822TVN at ENCODE; https://www.encodeproject.org/ENCBS822TVN/

value: Derived from ENCODE donor ENCDO448YMQ; https://www.encodeproject.org/ENCDO448YMQ/


title: TF ChIP-seq from HepG2 (ENCLB624DBJ)

description:
https://www.encodeproject.org/experiments/ENCSR984IXF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR984IXF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615JHA
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB624DBJ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF709

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS031SES at ENCODE; https://www.encodeproject.org/ENCBS031SES/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB578DRS)

description:
https://www.encodeproject.org/experiments/ENCSR612XVQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR612XVQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB578DRS
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS024XHE at ENCODE; https://www.encodeproject.org/ENCBS024XHE/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB279YBA)

description:
https://www.encodeproject.org/experiments/ENCSR516JCM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR516JCM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB279YBA

source_name: Homo sapiens female adult (37 years) activated CD4-positive, alpha-beta T primary cell

value: primary cell

value: female

value: adult

value: 37 year

value: Shelly Heimfeld

value: ENCBS248BDU at ENCODE; https://www.encodeproject.org/ENCBS248BDU/

value: Derived from ENCODE donor ENCDO514TDF; https://www.encodeproject.org/ENCDO514TDF/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB989VPZ)

description:
https://www.encodeproject.org/experiments/ENCSR515DVK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR515DVK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB989VPZ

source_name: Homo sapiens male adult (38 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS283PJL at ENCODE; https://www.encodeproject.org/ENCBS283PJL/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: TF ChIP-seq from HepG2 (ENCLB179OCN)

description:
https://www.encodeproject.org/experiments/ENCSR983KRB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR983KRB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB179OCN
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting MTA1

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS043FSX at ENCODE; https://www.encodeproject.org/ENCBS043FSX/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB886OYP)

description:
https://www.encodeproject.org/experiments/ENCSR599XKG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR599XKG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB886OYP
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting HMGXB4

value: cell line

value: ENCBS681YPJ at ENCODE; https://www.encodeproject.org/ENCBS681YPJ/


title: TF ChIP-seq from HepG2 (ENCLB600FCA)

description:
https://www.encodeproject.org/experiments/ENCSR607XFI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR607XFI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB600FCA
fragmentation methods: sonication (generic)

value: CTCF

value: ENCBS582VPK at ENCODE; https://www.encodeproject.org/ENCBS582VPK/


title: TF ChIP-seq from HepG2 (ENCLB863LDT)

description:
https://www.encodeproject.org/experiments/ENCSR982CFC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR982CFC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB863LDT
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting NR0B2

value: male

value: ENCBS122AHY at ENCODE; https://www.encodeproject.org/ENCBS122AHY/


title: TF ChIP-seq from HepG2 (ENCLB295ALJ)

description:
https://www.encodeproject.org/experiments/ENCSR983KRB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR983KRB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB295ALJ
fragmentation methods: sonication (generic)

value: ENCBS304ZUM at ENCODE; https://www.encodeproject.org/ENCBS304ZUM/


title: DNase-seq from uterus (ENCLB431PHB)

description:
https://www.encodeproject.org/experiments/ENCSR129BZE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR129BZE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB431PHB

source_name: Homo sapiens female adult (53 years) uterus tissue

value: uterus

value: tissue

value: female

value: adult

value: 53 year

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS469EGD at ENCODE; https://www.encodeproject.org/ENCBS469EGD/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: TF ChIP-seq from HepG2 (ENCLB414EPA)

description:
https://www.encodeproject.org/experiments/ENCSR598NQU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR598NQU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR770PLF
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB414EPA
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting NAIF1

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS802UOF at ENCODE; https://www.encodeproject.org/ENCBS802UOF/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from GM23338 (ENCLB105CMK)

description:
https://www.encodeproject.org/experiments/ENCSR334UWP/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF462 ChIP-seq on human GM23338
experiment encode accession: ENCSR334UWP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR883NMO, ENCSR518DKF
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB105CMK
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens GM23338 cell line genetically modified (insertion) using CRISPR targeting ZNF462

value: cell line

value: male

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS389XJZ at ENCODE; https://www.encodeproject.org/ENCBS389XJZ/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: TF ChIP-seq from HepG2 (ENCLB487UZB)

description:
https://www.encodeproject.org/experiments/ENCSR982CFC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR982CFC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB487UZB
fragmentation methods: sonication (generic)

value: ENCBS546WSB at ENCODE; https://www.encodeproject.org/ENCBS546WSB/


title: TF ChIP-seq from HepG2 (ENCLB155SBA)

description:
https://www.encodeproject.org/experiments/ENCSR598NQU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR598NQU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR770PLF
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB155SBA
fragmentation methods: sonication (generic)

value: ENCBS774EPU at ENCODE; https://www.encodeproject.org/ENCBS774EPU/


title: TF ChIP-seq from GM23338 (ENCLB061TAG)

description:
https://www.encodeproject.org/experiments/ENCSR334UWP/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF462 ChIP-seq on human GM23338
experiment encode accession: ENCSR334UWP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR883NMO, ENCSR518DKF
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB061TAG
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: adult

value: 53 year

value: ENCBS600VFK at ENCODE; https://www.encodeproject.org/ENCBS600VFK/


title: TF ChIP-seq from K562 (ENCLB272FEY)

description:
https://www.encodeproject.org/experiments/ENCSR128KLX/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-NR2F6 ChIP-seq on human K562
experiment encode accession: ENCSR128KLX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR333CHZ, ENCSR328FYU
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB272FEY
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting NR2F6

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to NR2F6.

value: female

value: chronic myelogenous leukemia (CML)

value: Kevin White

value: ENCBS179OKH at ENCODE; https://www.encodeproject.org/ENCBS179OKH/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB303MQB)

description:
https://www.encodeproject.org/experiments/ENCSR597QZQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR597QZQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR856RWG
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB303MQB
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting KIAA2018

value: cell line

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS122XKL at ENCODE; https://www.encodeproject.org/ENCBS122XKL/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB324KNC)

description:
https://www.encodeproject.org/experiments/ENCSR980HGI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR980HGI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB324KNC
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ELF4

value: male

value: ENCBS605ZZQ at ENCODE; https://www.encodeproject.org/ENCBS605ZZQ/


title: TF ChIP-seq from HepG2 (ENCLB229DRG)

description:
https://www.encodeproject.org/experiments/ENCSR597QZQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR597QZQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR856RWG
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB229DRG
fragmentation methods: sonication (generic)

value: ENCBS752AXC at ENCODE; https://www.encodeproject.org/ENCBS752AXC/


title: TF ChIP-seq from HepG2 (ENCLB141KLI)

description:
https://www.encodeproject.org/experiments/ENCSR980HGI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR980HGI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB141KLI
fragmentation methods: sonication (generic)

value: ENCBS215UKF at ENCODE; https://www.encodeproject.org/ENCBS215UKF/


title: TF ChIP-seq from K562 (ENCLB255WFP)

description:
https://www.encodeproject.org/experiments/ENCSR128KLX/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-NR2F6 ChIP-seq on human K562
experiment encode accession: ENCSR128KLX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR333CHZ, ENCSR328FYU
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB255WFP
size range: 450-650

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to NR2F6.

value: female

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: ENCBS314WGN at ENCODE; https://www.encodeproject.org/ENCBS314WGN/


title: TF ChIP-seq from HepG2 (ENCLB549FEC)

description:
https://www.encodeproject.org/experiments/ENCSR597MCV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR597MCV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR479INP
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB549FEC
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting LIN54

value: cell line

value: hepatocellular carcinoma

value: ENCBS649OXN at ENCODE; https://www.encodeproject.org/ENCBS649OXN/


title: TF ChIP-seq from K562 (ENCLB258FRP)

description:
https://www.encodeproject.org/experiments/ENCSR971EWR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR971EWR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR953NJZ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB258FRP
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ETV5

value: chronic myelogenous leukemia (CML)

value: Richard Myers, HAIB

value: ENCBS169ZLB at ENCODE; https://www.encodeproject.org/ENCBS169ZLB/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB324ADI)

description:
https://www.encodeproject.org/experiments/ENCSR129HDK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR129HDK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB324ADI

source_name: Homo sapiens male adult (42 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: primary cell

value: male

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS627ZSV at ENCODE; https://www.encodeproject.org/ENCBS627ZSV/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: TF ChIP-seq from HepG2 (ENCLB283DCS)

description:
https://www.encodeproject.org/experiments/ENCSR984IXF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR984IXF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615JHA
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB283DCS
fragmentation methods: sonication (generic)

value: child

value: 15 year

value: Richard Myers

value: ENCBS295WZO at ENCODE; https://www.encodeproject.org/ENCBS295WZO/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB759TMU)

description:
https://www.encodeproject.org/experiments/ENCSR129GCL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR129GCL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB759TMU

source_name: Homo sapiens male adult (42 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: adult

value: ENCBS040KTJ at ENCODE; https://www.encodeproject.org/ENCBS040KTJ/


title: TF ChIP-seq from K562 (ENCLB305AOI)

description:
https://www.encodeproject.org/experiments/ENCSR971EWR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR971EWR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR953NJZ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB305AOI
fragmentation methods: sonication (generic)

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Richard Myers, HAIB

value: ENCBS459KHB at ENCODE; https://www.encodeproject.org/ENCBS459KHB/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB364THI)

description:
https://www.encodeproject.org/experiments/ENCSR599XKG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR599XKG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB364THI
fragmentation methods: sonication (generic)

value: male

value: hepatocellular carcinoma

value: ENCBS937PST at ENCODE; https://www.encodeproject.org/ENCBS937PST/


title: DNase-seq from head of caudate nucleus (ENCLB317WTT)

description:
https://www.encodeproject.org/experiments/ENCSR334MDJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR334MDJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB317WTT

source_name: Homo sapiens female adult (89 years) head of caudate nucleus tissue with mild cognitive impairment

value: head of caudate nucleus

value: tissue

value: 89 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS149PTB at ENCODE; https://www.encodeproject.org/ENCBS149PTB/

value: Derived from ENCODE donor ENCDO896WHW; https://www.encodeproject.org/ENCDO896WHW/


title: DNase-seq from head of caudate nucleus (ENCLB404QTY)

description:
https://www.encodeproject.org/experiments/ENCSR333BUP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR333BUP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB404QTY

source_name: Homo sapiens female adult (86 years) head of caudate nucleus tissue with Cognitive impairment

value: adult

value: 86 year

value: ENCBS295EWT at ENCODE; https://www.encodeproject.org/ENCBS295EWT/

value: Derived from ENCODE donor ENCDO845GYA; https://www.encodeproject.org/ENCDO845GYA/


title: DNase-seq from CD8-positive naive resting alpha-beta T cell (ENCLB735ZXV)

description:
https://www.encodeproject.org/experiments/ENCSR332HAD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR332HAD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB735ZXV

source_name: Homo sapiens male adult (56 years) CD8-positive naive resting alpha-beta T primary cell

value: primary cell

value: 56 year

value: AllCells

value: ENCBS564BSW at ENCODE; https://www.encodeproject.org/ENCBS564BSW/

value: Derived from ENCODE donor ENCDO100JZM; https://www.encodeproject.org/ENCDO100JZM/


title: TF ChIP-seq from HepG2 (ENCLB705QOE)

description:
https://www.encodeproject.org/experiments/ENCSR584DEL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR584DEL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB705QOE
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF543

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS048ZGF at ENCODE; https://www.encodeproject.org/ENCBS048ZGF/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB268PUC)

description:
https://www.encodeproject.org/experiments/ENCSR584DEL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR584DEL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB268PUC
fragmentation methods: sonication (generic)

value: ENCBS798XAX at ENCODE; https://www.encodeproject.org/ENCBS798XAX/


title: TF ChIP-seq from HepG2 (ENCLB205NDP)

description:
https://www.encodeproject.org/experiments/ENCSR964ZJC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR964ZJC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB205NDP
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF547

value: ENCBS581QZA at ENCODE; https://www.encodeproject.org/ENCBS581QZA/


title: TF ChIP-seq from HepG2 (ENCLB826NSF)

description:
https://www.encodeproject.org/experiments/ENCSR960ASR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR960ASR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR776XHE
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB826NSF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting TIGD6

value: ENCBS341EHN at ENCODE; https://www.encodeproject.org/ENCBS341EHN/


title: TF ChIP-seq from K562 (ENCLB464MBT)

description:
https://www.encodeproject.org/experiments/ENCSR970OJY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR970OJY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR953NJZ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB464MBT
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting TCF3

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS538WQO at ENCODE; https://www.encodeproject.org/ENCBS538WQO/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from HCT116 (ENCLB404KGX)

description:
https://www.encodeproject.org/experiments/ENCSR872WGW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR872WGW
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-10-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB404KGX
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens HCT116 cell line

value: cell line

value: male

value: colorectal carcinoma

value: 48 year

value: Mats Ljungman, UMichigan

value: ATCC

value: ENCBS666SZS at ENCODE; https://www.encodeproject.org/ENCBS666SZS/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: TF ChIP-seq from HepG2 (ENCLB612PBU)

description:
https://www.encodeproject.org/experiments/ENCSR597MCV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR597MCV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR479INP
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB612PBU
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS202VUL at ENCODE; https://www.encodeproject.org/ENCBS202VUL/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/