title: DNase-seq from T-helper 17 cell (ENCLB448WKI)

description:
https://www.encodeproject.org/experiments/ENCSR623PVB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR623PVB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB448WKI

source_name: Homo sapiens male adult (30 years) T-helper 17 primary cell

value: T-helper 17 cell

value: primary cell

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS623ZUJ at ENCODE; https://www.encodeproject.org/ENCBS623ZUJ/


title: TF ChIP-seq from K562 (ENCLB005YXG)

status: Public on Mar 30 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR619UPN/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF133 ChIP-seq on human K562
experiment encode accession: ENCSR619UPN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR200QDR
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB005YXG
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF133

tag: antibody

tag: line

value: cell line

tag: biosample encode accession

tag: Sex

value: female

tag: health state

value: chronic myelogenous leukemia (CML)

tag: dev stage

value: adult

tag: age

value: 53 year

tag: lab

value: Michael Snyder, Stanford

tag: source

value: Kevin White

tag: passage number

tag: link

value: ENCBS855QTJ at ENCODE; https://www.encodeproject.org/ENCBS855QTJ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from T-helper 17 cell (ENCLB650FKX)

description:
https://www.encodeproject.org/experiments/ENCSR623PVB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR623PVB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB650FKX

source_name: Homo sapiens female adult (25 years) T-helper 17 primary cell

value: 25 year

value: ENCBS605VNU at ENCODE; https://www.encodeproject.org/ENCBS605VNU/

value: Derived from ENCODE donor ENCDO011KGM; https://www.encodeproject.org/ENCDO011KGM/


title: DNase-seq from right cardiac atrium (ENCLB239EKQ)

description:
https://www.encodeproject.org/experiments/ENCSR622HTS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR622HTS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB239EKQ

source_name: Homo sapiens female adult (59 years) right cardiac atrium tissue, preserved by flash-freezing

value: right cardiac atrium

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Yiing Lin, MD, PhD

value: ENCBS507OBM at ENCODE; https://www.encodeproject.org/ENCBS507OBM/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: TF ChIP-seq from HepG2 (ENCLB384SVC)

description:
https://www.encodeproject.org/experiments/ENCSR873OVI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR873OVI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB384SVC
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting MTA3

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS611HLN at ENCODE; https://www.encodeproject.org/ENCBS611HLN/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB420XTH)

description:
https://www.encodeproject.org/experiments/ENCSR512ECF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR512ECF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB420XTH
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF142

value: ENCBS866YFZ at ENCODE; https://www.encodeproject.org/ENCBS866YFZ/


title: TF ChIP-seq from K562 (ENCLB384UHT)

description:
https://www.encodeproject.org/experiments/ENCSR619UPN/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF133 ChIP-seq on human K562
experiment encode accession: ENCSR619UPN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR200QDR
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB384UHT
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS382ZNL at ENCODE; https://www.encodeproject.org/ENCBS382ZNL/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from T-cell (ENCLB734WCT)

description:
https://www.encodeproject.org/experiments/ENCSR631XIF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR631XIF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB734WCT

source_name: Homo sapiens female adult (33 years) T-cell primary cell

value: T-cell

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS420CMF at ENCODE; https://www.encodeproject.org/ENCBS420CMF/

value: Derived from ENCODE donor ENCDO204VTZ; https://www.encodeproject.org/ENCDO204VTZ/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB176HLV)

description:
https://www.encodeproject.org/experiments/ENCSR617SVO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR617SVO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB176HLV

source_name: Homo sapiens female adult (90 or above years) dorsolateral prefrontal cortex tissue with mild cognitive impairment

value: dorsolateral prefrontal cortex

value: tissue

value: 90 year or above

value: Rush University

value: ENCBS802DIQ at ENCODE; https://www.encodeproject.org/ENCBS802DIQ/

value: Derived from ENCODE donor ENCDO915WZE; https://www.encodeproject.org/ENCDO915WZE/


title: TF ChIP-seq from K562 (ENCLB804AYS)

description:
https://www.encodeproject.org/experiments/ENCSR617POJ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZFP1 ChIP-seq on human K562
experiment encode accession: ENCSR617POJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR675PWC
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB804AYS
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZFP1

value: cell line

tag: description

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZFP1.

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: ENCBS124KDW at ENCODE; https://www.encodeproject.org/ENCBS124KDW/


title: TF ChIP-seq from K562 (ENCLB074EUC)

description:
https://www.encodeproject.org/experiments/ENCSR617POJ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZFP1 ChIP-seq on human K562
experiment encode accession: ENCSR617POJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR675PWC
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB074EUC
size range: 450-650

value: Kevin White

value: ENCBS516VRI at ENCODE; https://www.encodeproject.org/ENCBS516VRI/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB023COQ)

description:
https://www.encodeproject.org/experiments/ENCSR332EKO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR332EKO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB023COQ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting HMGA1

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS980WBA at ENCODE; https://www.encodeproject.org/ENCBS980WBA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB003ARJ)

description:
https://www.encodeproject.org/experiments/ENCSR332EKO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR332EKO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB003ARJ
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS554KMG at ENCODE; https://www.encodeproject.org/ENCBS554KMG/


title: TF ChIP-seq from HepG2 (ENCLB496RHF)

description:
https://www.encodeproject.org/experiments/ENCSR331HWO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR331HWO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB496RHF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZBTB1

value: ENCBS239VZZ at ENCODE; https://www.encodeproject.org/ENCBS239VZZ/


title: TF ChIP-seq from HepG2 (ENCLB454FWR)

description:
https://www.encodeproject.org/experiments/ENCSR331HWO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR331HWO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB454FWR
fragmentation methods: sonication (generic)

value: ENCBS901YKL at ENCODE; https://www.encodeproject.org/ENCBS901YKL/


title: TF ChIP-seq from HepG2 (ENCLB056LCU)

description:
https://www.encodeproject.org/experiments/ENCSR869RSW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR869RSW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB056LCU
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF766

value: ENCBS912GTU at ENCODE; https://www.encodeproject.org/ENCBS912GTU/


title: DNase-seq from posterior cingulate gyrus (ENCLB605BVS)

description:
https://www.encodeproject.org/experiments/ENCSR628GQE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR628GQE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB605BVS

source_name: Homo sapiens female adult (88 years) posterior cingulate gyrus tissue with Alzheimer's disease

value: posterior cingulate gyrus

value: tissue

value: female

value: adult

value: 88 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS784UEL at ENCODE; https://www.encodeproject.org/ENCBS784UEL/

value: Derived from ENCODE donor ENCDO801BII; https://www.encodeproject.org/ENCDO801BII/


title: DNase-seq from right lobe of liver (ENCLB277MVD)

description:
https://www.encodeproject.org/experiments/ENCSR608NWP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR608NWP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB277MVD

source_name: Homo sapiens female child (16 years) right lobe of liver tissue, preserved by flash-freezing

value: right lobe of liver

value: DM:no; HTN:no; CAD:no

value: child

value: 16 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS706RNE at ENCODE; https://www.encodeproject.org/ENCBS706RNE/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: TF ChIP-seq from HepG2 (ENCLB552RHI)

description:
https://www.encodeproject.org/experiments/ENCSR520MCD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR520MCD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB552RHI
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting CEBPD

value: CEBPD

value: cell line

value: male

value: hepatocellular carcinoma

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS873MQM at ENCODE; https://www.encodeproject.org/ENCBS873MQM/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from mucosa of descending colon (ENCLB451DAM)

description:
https://www.encodeproject.org/experiments/ENCSR612CTW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR612CTW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB451DAM

source_name: Homo sapiens male adult (40 years) mucosa of descending colon tissue, preserved by flash-freezing

value: mucosa of descending colon

value: tissue

value: DM:no; HTN:yes; CAD:no

value: adult

value: 40 year

value: ENCBS069DBW at ENCODE; https://www.encodeproject.org/ENCBS069DBW/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: DNase-seq from posterior cingulate gyrus (ENCLB622ATV)

description:
https://www.encodeproject.org/experiments/ENCSR612IKQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR612IKQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB622ATV

source_name: Homo sapiens female adult (87 years) posterior cingulate gyrus tissue with Cognitive impairment, Alzheimer's disease

value: posterior cingulate gyrus

value: female

value: 87 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS803RZJ at ENCODE; https://www.encodeproject.org/ENCBS803RZJ/

value: Derived from ENCODE donor ENCDO940VNT; https://www.encodeproject.org/ENCDO940VNT/


title: TF ChIP-seq from HepG2 (ENCLB321KCF)

description:
https://www.encodeproject.org/experiments/ENCSR873OVI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR873OVI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB321KCF
fragmentation methods: sonication (generic)

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS912VDG at ENCODE; https://www.encodeproject.org/ENCBS912VDG/


title: TF ChIP-seq from HepG2 (ENCLB036EBJ)

description:
https://www.encodeproject.org/experiments/ENCSR520MCD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR520MCD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB036EBJ
fragmentation methods: sonication (generic)

value: CEBPD

value: ENCBS933WPT at ENCODE; https://www.encodeproject.org/ENCBS933WPT/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB702QPA)

description:
https://www.encodeproject.org/experiments/ENCSR869JZW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR869JZW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB702QPA
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting HOXA5

value: ENCBS604LIR at ENCODE; https://www.encodeproject.org/ENCBS604LIR/


title: DNase-seq from pancreas (ENCLB164LVP)

description:
https://www.encodeproject.org/experiments/ENCSR999VDH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR999VDH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB164LVP

source_name: Homo sapiens female adult (59 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: tissue

value: female

value: DM:yes; HTN:yes; CAD:no

value: adult

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS991BRG at ENCODE; https://www.encodeproject.org/ENCBS991BRG/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: TF ChIP-seq from HepG2 (ENCLB819IIP)

description:
https://www.encodeproject.org/experiments/ENCSR869JZW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR869JZW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB819IIP
fragmentation methods: sonication (generic)

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: ENCBS070LDJ at ENCODE; https://www.encodeproject.org/ENCBS070LDJ/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB570SLV)

description:
https://www.encodeproject.org/experiments/ENCSR606QDB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR606QDB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB570SLV

source_name: Homo sapiens male adult (82 years) dorsolateral prefrontal cortex tissue

value: dorsolateral prefrontal cortex

value: 82 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS945GJC at ENCODE; https://www.encodeproject.org/ENCBS945GJC/

value: Derived from ENCODE donor ENCDO407UTA; https://www.encodeproject.org/ENCDO407UTA/


title: TF ChIP-seq from HepG2 (ENCLB159PEE)

description:
https://www.encodeproject.org/experiments/ENCSR325VYA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR325VYA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB159PEE
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF557

value: Richard Myers

value: ENCBS112FFE at ENCODE; https://www.encodeproject.org/ENCBS112FFE/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB979FOW)

description:
https://www.encodeproject.org/experiments/ENCSR512ECF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR512ECF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB979FOW
fragmentation methods: sonication (generic)

value: ENCBS935FVR at ENCODE; https://www.encodeproject.org/ENCBS935FVR/


title: TF ChIP-seq from K562 (ENCLB952BZD)

description:
https://www.encodeproject.org/experiments/ENCSR998OMC/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-TFCP2 ChIP-seq on human K562
experiment encode accession: ENCSR998OMC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR125OAJ, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB952BZD
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting TFCP2

value: cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to TFCP2.

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS421QQY at ENCODE; https://www.encodeproject.org/ENCBS421QQY/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB903SLN)

description:
https://www.encodeproject.org/experiments/ENCSR998OMC/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-TFCP2 ChIP-seq on human K562
experiment encode accession: ENCSR998OMC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR125OAJ, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB903SLN
size range: 450-650

value: ENCBS392QKT at ENCODE; https://www.encodeproject.org/ENCBS392QKT/


title: TF ChIP-seq from HepG2 (ENCLB354JTH)

description:
https://www.encodeproject.org/experiments/ENCSR325VYA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR325VYA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB354JTH
fragmentation methods: sonication (generic)

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: ENCBS580HBQ at ENCODE; https://www.encodeproject.org/ENCBS580HBQ/


title: TF ChIP-seq from K562 (ENCLB050RQQ)

description:
https://www.encodeproject.org/experiments/ENCSR606KTL/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF239 ChIP-seq on human K562
experiment encode accession: ENCSR606KTL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR918YCV, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB050RQQ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF239

value: cell line

value: ENCBS111HUE at ENCODE; https://www.encodeproject.org/ENCBS111HUE/


title: TF ChIP-seq from HepG2 (ENCLB143BTH)

description:
https://www.encodeproject.org/experiments/ENCSR124APT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR124APT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB143BTH
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting NFYA

value: NFYA

value: Richard Myers

value: ENCBS401MTY at ENCODE; https://www.encodeproject.org/ENCBS401MTY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB994NHX)

description:
https://www.encodeproject.org/experiments/ENCSR995YPS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR995YPS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB994NHX

source_name: Homo sapiens female adult (87 years) dorsolateral prefrontal cortex tissue with mild cognitive impairment

value: dorsolateral prefrontal cortex

value: tissue

value: female

value: adult

value: 87 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS647RCK at ENCODE; https://www.encodeproject.org/ENCBS647RCK/

value: Derived from ENCODE donor ENCDO354SJE; https://www.encodeproject.org/ENCDO354SJE/


title: TF ChIP-seq from HepG2 (ENCLB932SDR)

description:
https://www.encodeproject.org/experiments/ENCSR869RSW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR869RSW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB932SDR
fragmentation methods: sonication (generic)

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: ENCBS052UPD at ENCODE; https://www.encodeproject.org/ENCBS052UPD/


title: TF ChIP-seq from HepG2 (ENCLB316NEN)

description:
https://www.encodeproject.org/experiments/ENCSR505LJT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR505LJT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB316NEN
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZFP37

value: cell line

value: Richard Myers

value: ENCBS030FOI at ENCODE; https://www.encodeproject.org/ENCBS030FOI/


title: TF ChIP-seq from HepG2 (ENCLB444IMH)

description:
https://www.encodeproject.org/experiments/ENCSR322ULL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR322ULL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB444IMH
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZBTB7B

value: ENCBS138PXI at ENCODE; https://www.encodeproject.org/ENCBS138PXI/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB337DRV)

description:
https://www.encodeproject.org/experiments/ENCSR505LJT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR505LJT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB337DRV
fragmentation methods: sonication (generic)

value: ENCBS086DNU at ENCODE; https://www.encodeproject.org/ENCBS086DNU/


title: DNase-seq from effector memory CD4-positive, alpha-beta T cell (ENCLB554YHO)

description:
https://www.encodeproject.org/experiments/ENCSR607EJV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR607EJV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB554YHO

source_name: Homo sapiens male adult (24 years) effector memory CD4-positive, alpha-beta T primary cell

value: primary cell

value: adult

value: 24 year

value: AllCells

value: ENCBS982QQW at ENCODE; https://www.encodeproject.org/ENCBS982QQW/

value: Derived from ENCODE donor ENCDO786GVO; https://www.encodeproject.org/ENCDO786GVO/


title: TF ChIP-seq from MCF-7 (ENCLB014RGN)

description:
https://www.encodeproject.org/experiments/ENCSR604WXQ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-MSX2 ChIP-seq on human MCF-7
experiment encode accession: ENCSR604WXQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR115CIR, ENCSR716YEJ
encode release date: 2020-07-16
lab: Michael Snyder, Stanford
library encode accession: ENCLB014RGN
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens MCF-7 cell line genetically modified (insertion) using CRISPR targeting MSX2

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS400CEG at ENCODE; https://www.encodeproject.org/ENCBS400CEG/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: TF ChIP-seq from MCF-7 (ENCLB185NBE)

description:
https://www.encodeproject.org/experiments/ENCSR604WXQ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-MSX2 ChIP-seq on human MCF-7
experiment encode accession: ENCSR604WXQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR115CIR, ENCSR716YEJ
encode release date: 2020-07-16
lab: Michael Snyder, Stanford
library encode accession: ENCLB185NBE
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: ENCBS970SPN at ENCODE; https://www.encodeproject.org/ENCBS970SPN/


title: TF ChIP-seq from K562 (ENCLB571REM)

description:
https://www.encodeproject.org/experiments/ENCSR995FUM/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF79 ChIP-seq on human K562
experiment encode accession: ENCSR995FUM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR257RVS
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB571REM
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF79

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Kevin White

value: ENCBS722FQE at ENCODE; https://www.encodeproject.org/ENCBS722FQE/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB786FQX)

description:
https://www.encodeproject.org/experiments/ENCSR985OYK/
***************
biological replicate number: 3
technical replicate number: 1
description: eGFP-ZBTB11 ChIP-seq on human K562
experiment encode accession: ENCSR985OYK
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR099ETQ, ENCSR328FYU
encode release date: 2021-01-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB786FQX
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZBTB11

value: adult

value: ATCC

value: ENCBS781WJV at ENCODE; https://www.encodeproject.org/ENCBS781WJV/


title: TF ChIP-seq from HepG2 (ENCLB245RNH)

description:
https://www.encodeproject.org/experiments/ENCSR322ULL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR322ULL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB245RNH
fragmentation methods: sonication (generic)

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS515LYG at ENCODE; https://www.encodeproject.org/ENCBS515LYG/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from K562 (ENCLB589LGV)

description:
https://www.encodeproject.org/experiments/ENCSR985OYK/
***************
biological replicate number: 4
technical replicate number: 1
description: eGFP-ZBTB11 ChIP-seq on human K562
experiment encode accession: ENCSR985OYK
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR099ETQ, ENCSR328FYU
encode release date: 2021-01-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB589LGV
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: female

value: Michael Snyder, Stanford

value: ENCBS652RNM at ENCODE; https://www.encodeproject.org/ENCBS652RNM/


title: TF ChIP-seq from K562 (ENCLB939NAG)

description:
https://www.encodeproject.org/experiments/ENCSR995FUM/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF79 ChIP-seq on human K562
experiment encode accession: ENCSR995FUM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR257RVS
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB939NAG
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Kevin White

value: ENCBS161FUE at ENCODE; https://www.encodeproject.org/ENCBS161FUE/


title: TF ChIP-seq from K562 (ENCLB944FWH)

description:
https://www.encodeproject.org/experiments/ENCSR606KTL/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF239 ChIP-seq on human K562
experiment encode accession: ENCSR606KTL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR918YCV, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB944FWH
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: adult

value: ENCBS840AJX at ENCODE; https://www.encodeproject.org/ENCBS840AJX/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB356QSR)

description:
https://www.encodeproject.org/experiments/ENCSR865RXA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR865RXA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB356QSR
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting FOXA1

value: male

value: hepatocellular carcinoma

value: child

value: ENCBS601JVN at ENCODE; https://www.encodeproject.org/ENCBS601JVN/


title: TF ChIP-seq from HepG2 (ENCLB448XDJ)

description:
https://www.encodeproject.org/experiments/ENCSR865RXA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR865RXA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB448XDJ
fragmentation methods: sonication (generic)

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS835WUS at ENCODE; https://www.encodeproject.org/ENCBS835WUS/


title: DNase-seq from right atrium auricular region (ENCLB305JHW)

description:
https://www.encodeproject.org/experiments/ENCSR984SQJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR984SQJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB305JHW

source_name: Homo sapiens female adult (53 years) right atrium auricular region tissue

value: right atrium auricular region

value: tissue

value: female

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS774VBP at ENCODE; https://www.encodeproject.org/ENCBS774VBP/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: TF ChIP-seq from HepG2 (ENCLB971HTF)

description:
https://www.encodeproject.org/experiments/ENCSR124APT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR124APT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB971HTF
fragmentation methods: sonication (generic)

value: NFYA

value: cell line

value: ENCBS831YQM at ENCODE; https://www.encodeproject.org/ENCBS831YQM/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from head of caudate nucleus (ENCLB980FGJ)

description:
https://www.encodeproject.org/experiments/ENCSR984SDD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR984SDD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB980FGJ

source_name: Homo sapiens female adult (90 or above years) head of caudate nucleus tissue with mild cognitive impairment

value: head of caudate nucleus

value: adult

value: 90 year or above

value: Rush University

value: ENCBS224AXG at ENCODE; https://www.encodeproject.org/ENCBS224AXG/

value: Derived from ENCODE donor ENCDO557QXE; https://www.encodeproject.org/ENCDO557QXE/


title: DNase-seq from head of caudate nucleus (ENCLB358YPB)

description:
https://www.encodeproject.org/experiments/ENCSR984HJW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR984HJW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB358YPB

source_name: Homo sapiens female adult (90 or above years) head of caudate nucleus tissue with Cognitive impairment, Alzheimer's disease

value: ENCBS326ZYR at ENCODE; https://www.encodeproject.org/ENCBS326ZYR/

value: Derived from ENCODE donor ENCDO859HCD; https://www.encodeproject.org/ENCDO859HCD/


title: TF ChIP-seq from HepG2 (ENCLB390QJF)

description:
https://www.encodeproject.org/experiments/ENCSR321VGW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR321VGW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB390QJF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ELF1

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS372YHG at ENCODE; https://www.encodeproject.org/ENCBS372YHG/


title: DNase-seq from heart left ventricle (ENCLB859TVA)

description:
https://www.encodeproject.org/experiments/ENCSR598RVJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR598RVJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB859TVA

source_name: Homo sapiens male adult (40 years) heart left ventricle tissue, preserved by flash-freezing

value: heart left ventricle

value: tissue

value: DM:no; HTN:yes; CAD:no

value: 40 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS256GOQ at ENCODE; https://www.encodeproject.org/ENCBS256GOQ/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: DNase-seq from posterior cingulate gyrus (ENCLB310VAK)

description:
https://www.encodeproject.org/experiments/ENCSR599JZA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR599JZA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB310VAK

source_name: Homo sapiens female adult (86 years) posterior cingulate gyrus tissue with Alzheimer's disease

value: posterior cingulate gyrus

value: female

value: adult

value: 86 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS974WSR at ENCODE; https://www.encodeproject.org/ENCBS974WSR/

value: Derived from ENCODE donor ENCDO997SGX; https://www.encodeproject.org/ENCDO997SGX/


title: TF ChIP-seq from HepG2 (ENCLB377OIO)

description:
https://www.encodeproject.org/experiments/ENCSR321OAA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR321OAA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB377OIO
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting FOXO1

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS860XZH at ENCODE; https://www.encodeproject.org/ENCBS860XZH/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB915QER)

description:
https://www.encodeproject.org/experiments/ENCSR321OAA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR321OAA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB915QER
fragmentation methods: sonication (generic)

value: ENCBS581TNJ at ENCODE; https://www.encodeproject.org/ENCBS581TNJ/


title: DNase-seq from posterior cingulate gyrus (ENCLB967LAM)

description:
https://www.encodeproject.org/experiments/ENCSR987CQN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR987CQN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB967LAM

source_name: Homo sapiens female adult (88 years) posterior cingulate gyrus tissue

value: posterior cingulate gyrus

value: tissue

value: female

value: 88 year

value: ENCBS470QXB at ENCODE; https://www.encodeproject.org/ENCBS470QXB/

value: Derived from ENCODE donor ENCDO669IVL; https://www.encodeproject.org/ENCDO669IVL/


title: DNase-seq from head of caudate nucleus (ENCLB082HCP)

description:
https://www.encodeproject.org/experiments/ENCSR598RRF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR598RRF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB082HCP

source_name: Homo sapiens female adult (87 years) head of caudate nucleus tissue

value: head of caudate nucleus

value: adult

value: 87 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS077YKW at ENCODE; https://www.encodeproject.org/ENCBS077YKW/

value: Derived from ENCODE donor ENCDO640RUC; https://www.encodeproject.org/ENCDO640RUC/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB092DAC)

description:
https://www.encodeproject.org/experiments/ENCSR982XOK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR982XOK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB092DAC

source_name: Homo sapiens male adult (71 years) dorsolateral prefrontal cortex tissue

value: dorsolateral prefrontal cortex

value: male

value: 71 year

value: ENCBS373MAP at ENCODE; https://www.encodeproject.org/ENCBS373MAP/

value: Derived from ENCODE donor ENCDO570AKP; https://www.encodeproject.org/ENCDO570AKP/


title: TF ChIP-seq from HepG2 (ENCLB015YVP)

description:
https://www.encodeproject.org/experiments/ENCSR321VGW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR321VGW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB015YVP
fragmentation methods: sonication (generic)

value: cell line

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS507RPY at ENCODE; https://www.encodeproject.org/ENCBS507RPY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from A549 (ENCLB872KJH)

description:
https://www.encodeproject.org/experiments/ENCSR977FEF/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-PRDM1 ChIP-seq on human A549
experiment encode accession: ENCSR977FEF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR279OHT, ENCSR663DVJ
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB872KJH
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting PRDM1

value: adult

value: 58 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS810DVN at ENCODE; https://www.encodeproject.org/ENCBS810DVN/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from HepG2 (ENCLB862YZJ)

description:
https://www.encodeproject.org/experiments/ENCSR118LGS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR118LGS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB862YZJ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting TSC22D2

value: male

value: ENCBS142VKL at ENCODE; https://www.encodeproject.org/ENCBS142VKL/


title: DNase-seq from spleen (ENCLB739FCT)

description:
https://www.encodeproject.org/experiments/ENCSR597UIG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR597UIG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB739FCT

source_name: Homo sapiens female adult (41 years) spleen tissue, preserved by flash-freezing

value: spleen

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Yiing Lin, MD, PhD

value: ENCBS430VLF at ENCODE; https://www.encodeproject.org/ENCBS430VLF/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: DNase-seq from T-cell (ENCLB264SYB)

description:
https://www.encodeproject.org/experiments/ENCSR597URK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR597URK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB264SYB

source_name: Homo sapiens female adult (28 years) T-cell primary cell

value: T-cell

value: primary cell

value: 28 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS768YZN at ENCODE; https://www.encodeproject.org/ENCBS768YZN/

value: Derived from ENCODE donor ENCDO518VWP; https://www.encodeproject.org/ENCDO518VWP/


title: TF ChIP-seq from HepG2 (ENCLB160QWC)

description:
https://www.encodeproject.org/experiments/ENCSR498TWD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR498TWD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB160QWC
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting MAF1

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS126ZDL at ENCODE; https://www.encodeproject.org/ENCBS126ZDL/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB481DHF)

description:
https://www.encodeproject.org/experiments/ENCSR313MMD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR313MMD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB481DHF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF263

value: ENCBS165XRH at ENCODE; https://www.encodeproject.org/ENCBS165XRH/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB936KNY)

description:
https://www.encodeproject.org/experiments/ENCSR984HIY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR984HIY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB936KNY

source_name: Homo sapiens male adult (38 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: adult

value: 38 year

value: ENCBS796DOZ at ENCODE; https://www.encodeproject.org/ENCBS796DOZ/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: TF ChIP-seq from HepG2 (ENCLB770IMM)

description:
https://www.encodeproject.org/experiments/ENCSR498TWD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR498TWD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB770IMM
fragmentation methods: sonication (generic)

value: ENCBS613AFR at ENCODE; https://www.encodeproject.org/ENCBS613AFR/


title: DNase-seq from left forelimb (ENCLB060BWD)

description:
https://www.encodeproject.org/experiments/ENCSR976XOY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR976XOY
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2018-01-29
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB060BWD

source_name: Homo sapiens male embryo (81 days) left forelimb tissue

value: left forelimb

value: tissue

value: left arm

value: embryonic

value: 81 day

value: John Stamatoyannopoulos, UW

value: BDRL

value: ENCBS104ACH at ENCODE; https://www.encodeproject.org/ENCBS104ACH/

value: Derived from ENCODE donor ENCDO184UZW; https://www.encodeproject.org/ENCDO184UZW/


title: DNase-seq from aorta (ENCLB257WSV)

description:
https://www.encodeproject.org/experiments/ENCSR595DQM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR595DQM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB257WSV

source_name: Homo sapiens female adult (59 years) aorta tissue, preserved by flash-freezing

value: aorta

value: female

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS980NKC at ENCODE; https://www.encodeproject.org/ENCBS980NKC/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: TF ChIP-seq from HepG2 (ENCLB286MJY)

description:
https://www.encodeproject.org/experiments/ENCSR855XFL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR855XFL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB286MJY
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting CREB3

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS822BJQ at ENCODE; https://www.encodeproject.org/ENCBS822BJQ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB389MOI)

description:
https://www.encodeproject.org/experiments/ENCSR310OZS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR310OZS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB389MOI
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting NR5A1

value: ENCBS793CIT at ENCODE; https://www.encodeproject.org/ENCBS793CIT/


title: TF ChIP-seq from HepG2 (ENCLB343BDW)

description:
https://www.encodeproject.org/experiments/ENCSR849TMV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR849TMV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB343BDW
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting SIX4

value: ENCBS557HKC at ENCODE; https://www.encodeproject.org/ENCBS557HKC/


title: TF ChIP-seq from HepG2 (ENCLB886PPY)

description:
https://www.encodeproject.org/experiments/ENCSR849TMV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR849TMV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB886PPY
fragmentation methods: sonication (generic)

value: ENCBS570NKH at ENCODE; https://www.encodeproject.org/ENCBS570NKH/


title: TF ChIP-seq from HepG2 (ENCLB050JVI)

description:
https://www.encodeproject.org/experiments/ENCSR855XFL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR855XFL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB050JVI
fragmentation methods: sonication (generic)

value: ENCBS107WSD at ENCODE; https://www.encodeproject.org/ENCBS107WSD/


title: DNase-seq from adrenal gland (ENCLB318RXB)

description:
https://www.encodeproject.org/experiments/ENCSR597NVK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR597NVK
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB318RXB

source_name: Homo sapiens female adult (53 years) adrenal gland tissue

value: adrenal gland

value: tissue

value: female

value: adult

value: 53 year

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS428WUR at ENCODE; https://www.encodeproject.org/ENCBS428WUR/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: TF ChIP-seq from K562 (ENCLB642XWP)

description:
https://www.encodeproject.org/experiments/ENCSR972CVS/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ELK3 ChIP-seq on human K562
experiment encode accession: ENCSR972CVS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR497AAP, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB642XWP
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ELK3

value: cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ELK3.

value: chronic myelogenous leukemia (CML)

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS641LWO at ENCODE; https://www.encodeproject.org/ENCBS641LWO/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from Panc1 (ENCLB787GWK)

description:
https://www.encodeproject.org/experiments/ENCSR591PIX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR591PIX
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-10-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB787GWK
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens Panc1 cell line

value: male

value: pancreatic carcinoma

value: 56 year

value: Mats Ljungman, UMichigan

value: ATCC

value: ENCBS630ELJ at ENCODE; https://www.encodeproject.org/ENCBS630ELJ/

value: Derived from ENCODE donor ENCDO000ABB; https://www.encodeproject.org/ENCDO000ABB/


title: TF ChIP-seq from HepG2 (ENCLB339STV)

description:
https://www.encodeproject.org/experiments/ENCSR310OZS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR310OZS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB339STV
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS319YYX at ENCODE; https://www.encodeproject.org/ENCBS319YYX/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ATAC-seq from Panc1 (ENCLB319FWG)

description:
https://www.encodeproject.org/experiments/ENCSR591PIX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR591PIX
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-10-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB319FWG
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: cell line

value: adult

value: ENCBS298BRW at ENCODE; https://www.encodeproject.org/ENCBS298BRW/


title: TF ChIP-seq from HepG2 (ENCLB212NSX)

description:
https://www.encodeproject.org/experiments/ENCSR118LGS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR118LGS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB212NSX
fragmentation methods: sonication (generic)

value: male

value: ENCBS604LEO at ENCODE; https://www.encodeproject.org/ENCBS604LEO/


title: TF ChIP-seq from K562 (ENCLB659PNH)

description:
https://www.encodeproject.org/experiments/ENCSR591ASD/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-TEAD1 ChIP-seq on human K562
experiment encode accession: ENCSR591ASD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR532KDW, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB659PNH
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting TEAD1

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to TEAD1.

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS315QLJ at ENCODE; https://www.encodeproject.org/ENCBS315QLJ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB306YBZ)

description:
https://www.encodeproject.org/experiments/ENCSR313MMD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR313MMD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB306YBZ
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: ENCBS773DAV at ENCODE; https://www.encodeproject.org/ENCBS773DAV/


title: TF ChIP-seq from HepG2 (ENCLB757NKK)

description:
https://www.encodeproject.org/experiments/ENCSR495RMN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR495RMN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB757NKK
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZFP62

value: cell line

value: Richard Myers

value: ENCBS733HSH at ENCODE; https://www.encodeproject.org/ENCBS733HSH/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB321NRX)

description:
https://www.encodeproject.org/experiments/ENCSR495RMN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR495RMN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB321NRX
fragmentation methods: sonication (generic)

value: male

value: ENCBS647AWR at ENCODE; https://www.encodeproject.org/ENCBS647AWR/


title: TF ChIP-seq from A549 (ENCLB870UJU)

description:
https://www.encodeproject.org/experiments/ENCSR977FEF/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-PRDM1 ChIP-seq on human A549
experiment encode accession: ENCSR977FEF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR279OHT, ENCSR663DVJ
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB870UJU
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting PRDM1

value: adult

value: 58 year

value: Michael Snyder

value: ENCBS223AKZ at ENCODE; https://www.encodeproject.org/ENCBS223AKZ/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from K562 (ENCLB600IEJ)

description:
https://www.encodeproject.org/experiments/ENCSR591ASD/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-TEAD1 ChIP-seq on human K562
experiment encode accession: ENCSR591ASD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR532KDW, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB600IEJ
size range: 450-650

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to TEAD1.

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS844RVR at ENCODE; https://www.encodeproject.org/ENCBS844RVR/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from head of caudate nucleus (ENCLB925JSC)

description:
https://www.encodeproject.org/experiments/ENCSR587SZC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR587SZC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB925JSC

source_name: Homo sapiens female adult (90 or above years) head of caudate nucleus tissue with Alzheimer's disease

value: head of caudate nucleus

value: tissue

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS193GOL at ENCODE; https://www.encodeproject.org/ENCBS193GOL/

value: Derived from ENCODE donor ENCDO680UUE; https://www.encodeproject.org/ENCDO680UUE/


title: DNase-seq from posterior cingulate gyrus (ENCLB173MEW)

description:
https://www.encodeproject.org/experiments/ENCSR590EFT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR590EFT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB173MEW

source_name: Homo sapiens female adult (90 or above years) posterior cingulate gyrus tissue

value: posterior cingulate gyrus

value: adult

value: ENCBS862JNK at ENCODE; https://www.encodeproject.org/ENCBS862JNK/

value: Derived from ENCODE donor ENCDO948PMW; https://www.encodeproject.org/ENCDO948PMW/


title: DNase-seq from pancreas (ENCLB186GPM)

description:
https://www.encodeproject.org/experiments/ENCSR589HAC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR589HAC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB186GPM

source_name: Homo sapiens female adult (61 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: female

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: 61 year

value: Yiing Lin, MD, PhD

value: ENCBS031JXY at ENCODE; https://www.encodeproject.org/ENCBS031JXY/

value: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/


title: TF ChIP-seq from A549 (ENCLB210CYC)

description:
https://www.encodeproject.org/experiments/ENCSR967ZMR/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-HOXB13 ChIP-seq on human A549
experiment encode accession: ENCSR967ZMR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR841MVT, ENCSR928HJI
encode release date: 2020-07-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB210CYC
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting HOXB13

value: cell line

value: male

value: 58 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS536RJJ at ENCODE; https://www.encodeproject.org/ENCBS536RJJ/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from K562 (ENCLB689PDZ)

description:
https://www.encodeproject.org/experiments/ENCSR972CVS/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ELK3 ChIP-seq on human K562
experiment encode accession: ENCSR972CVS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR497AAP, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB689PDZ
size range: 450-650

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ELK3.

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Kevin White

value: ENCBS419VTQ at ENCODE; https://www.encodeproject.org/ENCBS419VTQ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from ascending aorta (ENCLB331PDB)

description:
https://www.encodeproject.org/experiments/ENCSR968TPO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR968TPO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-07
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB331PDB

source_name: Homo sapiens female adult (53 years) ascending aorta tissue

value: ascending aorta

value: tissue

value: female

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS018DZY at ENCODE; https://www.encodeproject.org/ENCBS018DZY/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: DNase-seq from T-cell (ENCLB571VPS)

description:
https://www.encodeproject.org/experiments/ENCSR965JHW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR965JHW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB571VPS

source_name: Homo sapiens male adult (25 years) T-cell primary cell

value: T-cell

value: primary cell

value: male

value: 25 year

value: AllCells

value: ENCBS161TEW at ENCODE; https://www.encodeproject.org/ENCBS161TEW/

value: Derived from ENCODE donor ENCDO240EBF; https://www.encodeproject.org/ENCDO240EBF/


title: DNase-seq from effector memory CD4-positive, alpha-beta T cell (ENCLB577TQN)

description:
https://www.encodeproject.org/experiments/ENCSR582QEW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR582QEW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB577TQN

source_name: Homo sapiens female adult (25 years) effector memory CD4-positive, alpha-beta T primary cell

value: adult

value: ENCBS726LLE at ENCODE; https://www.encodeproject.org/ENCBS726LLE/

value: Derived from ENCODE donor ENCDO011KGM; https://www.encodeproject.org/ENCDO011KGM/


title: DNase-seq from T-cell (ENCLB817PHJ)

description:
https://www.encodeproject.org/experiments/ENCSR581RSO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR581RSO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB817PHJ

source_name: Homo sapiens male adult (34 years) T-cell primary cell

value: 34 year

value: ENCBS167ISM at ENCODE; https://www.encodeproject.org/ENCBS167ISM/

value: Derived from ENCODE donor ENCDO712ENO; https://www.encodeproject.org/ENCDO712ENO/


title: DNase-seq from posterior cingulate gyrus (ENCLB304GKW)

description:
https://www.encodeproject.org/experiments/ENCSR581LHW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR581LHW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB304GKW

source_name: Homo sapiens female adult (90 or above years) posterior cingulate gyrus tissue with Alzheimer's disease

value: posterior cingulate gyrus

value: tissue

value: female

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS334UJW at ENCODE; https://www.encodeproject.org/ENCBS334UJW/

value: Derived from ENCODE donor ENCDO680UUE; https://www.encodeproject.org/ENCDO680UUE/


title: TF ChIP-seq from K562 (ENCLB465RTB)

description:
https://www.encodeproject.org/experiments/ENCSR959BQO/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF700 ChIP-seq on human K562
experiment encode accession: ENCSR959BQO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR724LHB
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB465RTB
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF700

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS786XGG at ENCODE; https://www.encodeproject.org/ENCBS786XGG/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from adrenal gland (ENCLB677ATQ)

description:
https://www.encodeproject.org/experiments/ENCSR962VJO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR962VJO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB677ATQ

source_name: Homo sapiens female child (16 years) adrenal gland tissue, preserved by flash-freezing

value: adrenal gland

value: DM:no; HTN:no; CAD:no

value: child

value: 16 year

value: Yiing Lin, MD, PhD

value: ENCBS928RWN at ENCODE; https://www.encodeproject.org/ENCBS928RWN/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: TF ChIP-seq from K562 (ENCLB933NEE)

description:
https://www.encodeproject.org/experiments/ENCSR958JPH/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-TSHZ1 ChIP-seq on human K562
experiment encode accession: ENCSR958JPH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR412OEE, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB933NEE
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting TSHZ1

value: female

value: adult

value: ENCBS610XIC at ENCODE; https://www.encodeproject.org/ENCBS610XIC/


title: TF ChIP-seq from K562 (ENCLB720PVH)

description:
https://www.encodeproject.org/experiments/ENCSR958JPH/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-TSHZ1 ChIP-seq on human K562
experiment encode accession: ENCSR958JPH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR412OEE, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB720PVH
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: ENCBS220ERL at ENCODE; https://www.encodeproject.org/ENCBS220ERL/


title: TF ChIP-seq from K562 (ENCLB422CWA)

description:
https://www.encodeproject.org/experiments/ENCSR959BQO/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF700 ChIP-seq on human K562
experiment encode accession: ENCSR959BQO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR724LHB
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB422CWA
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS094JCN at ENCODE; https://www.encodeproject.org/ENCBS094JCN/


title: DNase-seq from posterior cingulate gyrus (ENCLB545ZXR)

description:
https://www.encodeproject.org/experiments/ENCSR577QZP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR577QZP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB545ZXR

value: posterior cingulate gyrus

value: tissue

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS029YJS at ENCODE; https://www.encodeproject.org/ENCBS029YJS/

value: Derived from ENCODE donor ENCDO473TSU; https://www.encodeproject.org/ENCDO473TSU/


title: TF ChIP-seq from K562 (ENCLB865NTQ)

description:
https://www.encodeproject.org/experiments/ENCSR577KQD/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF507 ChIP-seq on human K562
experiment encode accession: ENCSR577KQD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR415ETK
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB865NTQ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF507

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS509WJI at ENCODE; https://www.encodeproject.org/ENCBS509WJI/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from ureter (ENCLB184DZR)

description:
https://www.encodeproject.org/experiments/ENCSR398JUP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR398JUP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB184DZR

source_name: Homo sapiens female adult (47 years) ureter tissue, preserved by flash-freezing

value: ureter

value: female

value: DM:yes; HTN:yes; CAD:no

value: adult

value: 47 year

value: Yiing Lin, MD, PhD

value: ENCBS795CPS at ENCODE; https://www.encodeproject.org/ENCBS795CPS/

value: Derived from ENCODE donor ENCDO528BHB; https://www.encodeproject.org/ENCDO528BHB/


title: DNase-seq from regulatory T cell (ENCLB411FBY)

description:
https://www.encodeproject.org/experiments/ENCSR398CXD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR398CXD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB411FBY

source_name: Homo sapiens male adult (24 years) regulatory T primary cell

value: regulatory T cell

value: primary cell

value: male

value: 24 year

value: AllCells

value: ENCBS799TTR at ENCODE; https://www.encodeproject.org/ENCBS799TTR/

value: Derived from ENCODE donor ENCDO786GVO; https://www.encodeproject.org/ENCDO786GVO/


title: DNase-seq from colonic mucosa (ENCLB838UEG)

description:
https://www.encodeproject.org/experiments/ENCSR576UAF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR576UAF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB838UEG

source_name: Homo sapiens female child (16 years) colonic mucosa tissue, preserved by flash-freezing

value: colonic mucosa

value: tissue

value: DM:no; HTN:no; CAD:no

value: child

value: 16 year

value: Michael Snyder, Stanford

value: ENCBS562DVH at ENCODE; https://www.encodeproject.org/ENCBS562DVH/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: TF ChIP-seq from K562 (ENCLB683EJY)

description:
https://www.encodeproject.org/experiments/ENCSR577KQD/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF507 ChIP-seq on human K562
experiment encode accession: ENCSR577KQD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR415ETK
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB683EJY
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Kevin White

value: ENCBS798XBO at ENCODE; https://www.encodeproject.org/ENCBS798XBO/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from A549 (ENCLB032PIM)

description:
https://www.encodeproject.org/experiments/ENCSR967ZMR/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-HOXB13 ChIP-seq on human A549
experiment encode accession: ENCSR967ZMR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR841MVT, ENCSR928HJI
encode release date: 2020-07-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB032PIM
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: male

value: 58 year

value: Michael Snyder

value: ENCBS847DWP at ENCODE; https://www.encodeproject.org/ENCBS847DWP/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: DNase-seq from heart left ventricle (ENCLB012TAO)

description:
https://www.encodeproject.org/experiments/ENCSR395HAE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR395HAE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB012TAO

source_name: Homo sapiens female adult (59 years) heart left ventricle tissue, preserved by flash-freezing

value: heart left ventricle

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Yiing Lin, MD, PhD

value: ENCBS735RKY at ENCODE; https://www.encodeproject.org/ENCBS735RKY/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: TF ChIP-seq from K562 (ENCLB866YUD)

description:
https://www.encodeproject.org/experiments/ENCSR953KEY/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-TFE3 ChIP-seq on human K562
experiment encode accession: ENCSR953KEY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR710DAJ, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB866YUD
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting TFE3

value: cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to TFE3.

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: Michael Snyder, Stanford

value: ENCBS430IWD at ENCODE; https://www.encodeproject.org/ENCBS430IWD/


title: TF ChIP-seq from K562 (ENCLB742LPY)

description:
https://www.encodeproject.org/experiments/ENCSR953KEY/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-TFE3 ChIP-seq on human K562
experiment encode accession: ENCSR953KEY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR710DAJ, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB742LPY
size range: 450-650

value: 53 year

value: Kevin White

value: ENCBS969XBW at ENCODE; https://www.encodeproject.org/ENCBS969XBW/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB806IQR)

description:
https://www.encodeproject.org/experiments/ENCSR572FSS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR572FSS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB806IQR

source_name: Homo sapiens male adult (38 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS177OAL at ENCODE; https://www.encodeproject.org/ENCBS177OAL/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: TF ChIP-seq from K562 (ENCLB848FCC)

description:
https://www.encodeproject.org/experiments/ENCSR574VJG/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-NFIX ChIP-seq on human K562
experiment encode accession: ENCSR574VJG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR028NPT
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB848FCC
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting NFIX

value: NFIX

value: cell line

value: female

value: ENCBS242JDR at ENCODE; https://www.encodeproject.org/ENCBS242JDR/


title: TF ChIP-seq from K562 (ENCLB123KBQ)

description:
https://www.encodeproject.org/experiments/ENCSR574VJG/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-NFIX ChIP-seq on human K562
experiment encode accession: ENCSR574VJG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR028NPT
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB123KBQ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: chronic myelogenous leukemia (CML)

value: adult

value: Michael Snyder, Stanford

value: ENCBS515LAF at ENCODE; https://www.encodeproject.org/ENCBS515LAF/


title: DNase-seq from T-cell (ENCLB698NMO)

description:
https://www.encodeproject.org/experiments/ENCSR396ZIN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR396ZIN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB698NMO

source_name: Homo sapiens female adult (35 years) T-cell primary cell

value: T-cell

value: 35 year

value: ENCBS406BPP at ENCODE; https://www.encodeproject.org/ENCBS406BPP/

value: Derived from ENCODE donor ENCDO181KWF; https://www.encodeproject.org/ENCDO181KWF/


title: DNase-seq from placenta (ENCLB424CCW)

description:
https://www.encodeproject.org/experiments/ENCSR395EZY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR395EZY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB424CCW

source_name: Homo sapiens male embryo placenta tissue

value: placenta

value: tissue

value: male

value: embryonic

value: unknown

value: John Stamatoyannopoulos

value: ENCBS499CAJ at ENCODE; https://www.encodeproject.org/ENCBS499CAJ/

value: Derived from ENCODE donor ENCDO225QCT; https://www.encodeproject.org/ENCDO225QCT/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB059EVA)

description:
https://www.encodeproject.org/experiments/ENCSR570BWW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR570BWW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB059EVA

source_name: Homo sapiens female adult (89 years) dorsolateral prefrontal cortex tissue with Alzheimer's disease

value: dorsolateral prefrontal cortex

value: female

value: 89 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS159OJV at ENCODE; https://www.encodeproject.org/ENCBS159OJV/

value: Derived from ENCODE donor ENCDO830KFO; https://www.encodeproject.org/ENCDO830KFO/


title: DNase-seq from T-cell (ENCLB391YWP)

description:
https://www.encodeproject.org/experiments/ENCSR389IHS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR389IHS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB391YWP

source_name: Homo sapiens male adult (24 years) T-cell primary cell

value: T-cell

value: primary cell

value: adult

value: 24 year

value: AllCells

value: ENCBS491KVF at ENCODE; https://www.encodeproject.org/ENCBS491KVF/

value: Derived from ENCODE donor ENCDO937YKH; https://www.encodeproject.org/ENCDO937YKH/


title: DNase-seq from spleen (ENCLB745XOW)

description:
https://www.encodeproject.org/experiments/ENCSR567EEO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR567EEO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB745XOW

source_name: Homo sapiens female adult (61 years) spleen tissue, preserved by flash-freezing

value: spleen

value: tissue

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: 61 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS770SKN at ENCODE; https://www.encodeproject.org/ENCBS770SKN/

value: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB078WQU)

description:
https://www.encodeproject.org/experiments/ENCSR571CJM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR571CJM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB078WQU

source_name: Homo sapiens female adult (87 years) dorsolateral prefrontal cortex tissue

value: dorsolateral prefrontal cortex

value: female

value: 87 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS525QOI at ENCODE; https://www.encodeproject.org/ENCBS525QOI/

value: Derived from ENCODE donor ENCDO640RUC; https://www.encodeproject.org/ENCDO640RUC/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB894KLO)

description:
https://www.encodeproject.org/experiments/ENCSR389BWT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR389BWT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB894KLO

source_name: Homo sapiens female adult (33 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: adult

value: 33 year

value: AllCells

value: ENCBS980XWI at ENCODE; https://www.encodeproject.org/ENCBS980XWI/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: DNase-seq from lower leg skin (ENCLB612IZR)

description:
https://www.encodeproject.org/experiments/ENCSR579KDC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR579KDC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB612IZR

source_name: Homo sapiens female adult (53 years) lower leg skin tissue

value: lower leg skin

value: tissue

value: 53 year

value: Kristin Ardlie

value: ENCBS456UGV at ENCODE; https://www.encodeproject.org/ENCBS456UGV/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: TF ChIP-seq from K562 (ENCLB852MBP)

description:
https://www.encodeproject.org/experiments/ENCSR388ZRV/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF311 ChIP-seq on human K562
experiment encode accession: ENCSR388ZRV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR146HFQ, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB852MBP
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF311

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS982QGV at ENCODE; https://www.encodeproject.org/ENCBS982QGV/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from placenta (ENCLB050MOD)

description:
https://www.encodeproject.org/experiments/ENCSR566VAK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR566VAK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB050MOD

source_name: Homo sapiens female embryo placenta tissue

value: placenta

value: embryonic

value: unknown

value: John Stamatoyannopoulos, UW

value: John Stamatoyannopoulos

value: ENCBS192UCK at ENCODE; https://www.encodeproject.org/ENCBS192UCK/

value: Derived from ENCODE donor ENCDO496RNL; https://www.encodeproject.org/ENCDO496RNL/


title: DNase-seq from psoas muscle (ENCLB567TNC)

description:
https://www.encodeproject.org/experiments/ENCSR388DHS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR388DHS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB567TNC

source_name: Homo sapiens female adult (59 years) psoas muscle tissue, preserved by flash-freezing

value: psoas muscle

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: adult

value: 59 year

value: Yiing Lin, MD, PhD

value: ENCBS885QUL at ENCODE; https://www.encodeproject.org/ENCBS885QUL/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: TF ChIP-seq from K562 (ENCLB118IQX)

description:
https://www.encodeproject.org/experiments/ENCSR388ZRV/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF311 ChIP-seq on human K562
experiment encode accession: ENCSR388ZRV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR146HFQ, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB118IQX
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS903JDT at ENCODE; https://www.encodeproject.org/ENCBS903JDT/


title: TF ChIP-seq from K562 (ENCLB718PPR)

description:
https://www.encodeproject.org/experiments/ENCSR947PJZ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-HIVEP1 ChIP-seq on human K562
experiment encode accession: ENCSR947PJZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR965AWP, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB718PPR
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting HIVEP1

value: ENCBS686VGB at ENCODE; https://www.encodeproject.org/ENCBS686VGB/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB419CFE)

description:
https://www.encodeproject.org/experiments/ENCSR387BVC/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-DDIT3 ChIP-seq on human K562
experiment encode accession: ENCSR387BVC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR213ZCM, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB419CFE
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting DDIT3

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to DDIT3.

value: ENCBS190JDH at ENCODE; https://www.encodeproject.org/ENCBS190JDH/


title: TF ChIP-seq from K562 (ENCLB609YPQ)

description:
https://www.encodeproject.org/experiments/ENCSR947PJZ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-HIVEP1 ChIP-seq on human K562
experiment encode accession: ENCSR947PJZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR965AWP, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB609YPQ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: ENCBS788KVP at ENCODE; https://www.encodeproject.org/ENCBS788KVP/