title: DNase-seq from CD4-positive naive resting alpha-beta T cell (ENCLB342XMJ)

description:
https://www.encodeproject.org/experiments/ENCSR387EYA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR387EYA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB342XMJ

source_name: Homo sapiens male adult (43 years) CD4-positive naive resting alpha-beta T primary cell

value: primary cell

value: male

value: adult

value: 43 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS575MYV at ENCODE; https://www.encodeproject.org/ENCBS575MYV/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: TF ChIP-seq from K562 (ENCLB990YRO)

status: Public on Mar 30 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR387BVC/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-DDIT3 ChIP-seq on human K562
experiment encode accession: ENCSR387BVC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR213ZCM, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB990YRO
size range: 450-650

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting DDIT3

tag: antibody

tag: line

value: cell line

tag: description

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to DDIT3.

tag: biosample encode accession

tag: Sex

value: female

tag: health state

value: chronic myelogenous leukemia (CML)

tag: dev stage

tag: age

value: 53 year

tag: lab

value: Michael Snyder, Stanford

tag: source

value: Kevin White

tag: link

value: ENCBS744YRD at ENCODE; https://www.encodeproject.org/ENCBS744YRD/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB851YPF)

description:
https://www.encodeproject.org/experiments/ENCSR199HGP/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZKSCAN3 ChIP-seq on human K562
experiment encode accession: ENCSR199HGP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR905GXX, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB851YPF
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZKSCAN3

value: ENCBS705HLM at ENCODE; https://www.encodeproject.org/ENCBS705HLM/


title: DNase-seq from spleen (ENCLB588RSJ)

description:
https://www.encodeproject.org/experiments/ENCSR946OIO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR946OIO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB588RSJ

source_name: Homo sapiens female adult (59 years) spleen tissue, preserved by flash-freezing

value: spleen

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Yiing Lin, MD, PhD

value: ENCBS279UIZ at ENCODE; https://www.encodeproject.org/ENCBS279UIZ/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: TF ChIP-seq from K562 (ENCLB873MHQ)

description:
https://www.encodeproject.org/experiments/ENCSR199HGP/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZKSCAN3 ChIP-seq on human K562
experiment encode accession: ENCSR199HGP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR905GXX, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB873MHQ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: adult

value: ENCBS317OTM at ENCODE; https://www.encodeproject.org/ENCBS317OTM/


title: TF ChIP-seq from K562 (ENCLB947RXL)

description:
https://www.encodeproject.org/experiments/ENCSR385IUC/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-TBX18 ChIP-seq on human K562
experiment encode accession: ENCSR385IUC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR174APY, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB947RXL
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting TBX18

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS295NOZ at ENCODE; https://www.encodeproject.org/ENCBS295NOZ/


title: DNase-seq from T-cell (ENCLB981DDC)

description:
https://www.encodeproject.org/experiments/ENCSR198UKY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR198UKY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB981DDC

source_name: Homo sapiens male adult (47 years) T-cell primary cell

value: T-cell

value: primary cell

value: male

value: 47 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS779ZPC at ENCODE; https://www.encodeproject.org/ENCBS779ZPC/

value: Derived from ENCODE donor ENCDO072JRH; https://www.encodeproject.org/ENCDO072JRH/


title: DNase-seq from T-cell (ENCLB459LXB)

description:
https://www.encodeproject.org/experiments/ENCSR385XHV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR385XHV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB459LXB

source_name: Homo sapiens female adult (31 years) T-cell primary cell

value: 31 year

value: ENCBS293ZEH at ENCODE; https://www.encodeproject.org/ENCBS293ZEH/

value: Derived from ENCODE donor ENCDO941PAP; https://www.encodeproject.org/ENCDO941PAP/


title: TF ChIP-seq from K562 (ENCLB956MBN)

description:
https://www.encodeproject.org/experiments/ENCSR385IUC/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-TBX18 ChIP-seq on human K562
experiment encode accession: ENCSR385IUC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR174APY, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB956MBN
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS828ZSJ at ENCODE; https://www.encodeproject.org/ENCBS828ZSJ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB302LSF)

description:
https://www.encodeproject.org/experiments/ENCSR567IWT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR567IWT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB302LSF
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens female adult (37 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: female

value: adult

value: 37 year

value: Shelly Heimfeld

value: ENCBS012ZSH at ENCODE; https://www.encodeproject.org/ENCBS012ZSH/

value: Derived from ENCODE donor ENCDO514TDF; https://www.encodeproject.org/ENCDO514TDF/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB679QRQ)

description:
https://www.encodeproject.org/experiments/ENCSR946BPA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR946BPA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB679QRQ

source_name: Homo sapiens male adult (38 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: primary cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS592JRF at ENCODE; https://www.encodeproject.org/ENCBS592JRF/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from prostate gland (ENCLB084KXA)

description:
https://www.encodeproject.org/experiments/ENCSR564FZH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR564FZH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB084KXA

source_name: Homo sapiens male adult (37 years) prostate gland tissue

value: prostate gland

value: tissue

value: Kristin Ardlie

value: ENCBS129ZYV at ENCODE; https://www.encodeproject.org/ENCBS129ZYV/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: DNase-seq from T-helper 2 cell (ENCLB256GMM)

description:
https://www.encodeproject.org/experiments/ENCSR197ZNW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR197ZNW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB256GMM

source_name: Homo sapiens male adult (24 years) T-helper 2 primary cell

value: T-helper 2 cell

value: adult

value: 24 year

value: ENCBS053PUQ at ENCODE; https://www.encodeproject.org/ENCBS053PUQ/

value: Derived from ENCODE donor ENCDO786GVO; https://www.encodeproject.org/ENCDO786GVO/


title: DNase-seq from lung (ENCLB916DMW)

description:
https://www.encodeproject.org/experiments/ENCSR945JJB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR945JJB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB916DMW

source_name: Homo sapiens female adult (47 years) lung tissue, preserved by flash-freezing

value: lung

value: female

value: DM:yes; HTN:yes; CAD:no

value: 47 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS806SDX at ENCODE; https://www.encodeproject.org/ENCBS806SDX/

value: Derived from ENCODE donor ENCDO528BHB; https://www.encodeproject.org/ENCDO528BHB/


title: DNase-seq from T-helper 22 cell (ENCLB990PRD)

description:
https://www.encodeproject.org/experiments/ENCSR944GPH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR944GPH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB990PRD

source_name: Homo sapiens female adult (25 years) T-helper 22 primary cell

value: T-helper 22 cell

value: primary cell

value: 25 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS609WRC at ENCODE; https://www.encodeproject.org/ENCBS609WRC/

value: Derived from ENCODE donor ENCDO011KGM; https://www.encodeproject.org/ENCDO011KGM/


title: DNase-seq from mesenteric fat pad (ENCLB371TFN)

description:
https://www.encodeproject.org/experiments/ENCSR197BFD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR197BFD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB371TFN

source_name: Homo sapiens female adult (59 years) mesenteric fat pad tissue, preserved by flash-freezing

value: mesenteric fat pad

value: tissue

value: adult

value: 59 year

value: ENCBS916LBT at ENCODE; https://www.encodeproject.org/ENCBS916LBT/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: DNase-seq from posterior cingulate gyrus (ENCLB802IBR)

description:
https://www.encodeproject.org/experiments/ENCSR943MRO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR943MRO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB802IBR

source_name: Homo sapiens female adult (85 years) posterior cingulate gyrus tissue

value: posterior cingulate gyrus

value: female

value: 85 year

value: Rush University

value: ENCBS793AAJ at ENCODE; https://www.encodeproject.org/ENCBS793AAJ/

value: Derived from ENCODE donor ENCDO982NCL; https://www.encodeproject.org/ENCDO982NCL/


title: DNase-seq from T-helper 2 cell (ENCLB169YXG)

description:
https://www.encodeproject.org/experiments/ENCSR943KMD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR943KMD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB169YXG

source_name: Homo sapiens male adult (38 years) T-helper 2 primary cell

value: T-helper 2 cell

value: primary cell

value: male

value: 38 year

value: ENCBS579RSJ at ENCODE; https://www.encodeproject.org/ENCBS579RSJ/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: TF ChIP-seq from K562 (ENCLB887QPH)

description:
https://www.encodeproject.org/experiments/ENCSR376XAV/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-SMAD3 ChIP-seq on human K562
experiment encode accession: ENCSR376XAV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR385NZN, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB887QPH
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting SMAD3

value: cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to SMAD3.

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS019GQD at ENCODE; https://www.encodeproject.org/ENCBS019GQD/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB882BED)

description:
https://www.encodeproject.org/experiments/ENCSR376XAV/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-SMAD3 ChIP-seq on human K562
experiment encode accession: ENCSR376XAV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR385NZN, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB882BED
size range: 450-650

value: female

value: adult

value: ENCBS937IGV at ENCODE; https://www.encodeproject.org/ENCBS937IGV/


title: TF ChIP-seq from K562 (ENCLB550XFI)

description:
https://www.encodeproject.org/experiments/ENCSR376UMR/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF84 ChIP-seq on human K562
experiment encode accession: ENCSR376UMR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR796QVL
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB550XFI
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF84

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF84.

value: ENCBS369KMH at ENCODE; https://www.encodeproject.org/ENCBS369KMH/


title: DNase-seq from head of caudate nucleus (ENCLB112UMP)

description:
https://www.encodeproject.org/experiments/ENCSR563HBG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR563HBG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB112UMP

source_name: Homo sapiens female adult (90 or above years) head of caudate nucleus tissue

value: head of caudate nucleus

value: tissue

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS854BCY at ENCODE; https://www.encodeproject.org/ENCBS854BCY/

value: Derived from ENCODE donor ENCDO218FFZ; https://www.encodeproject.org/ENCDO218FFZ/


title: TF ChIP-seq from K562 (ENCLB534PZA)

description:
https://www.encodeproject.org/experiments/ENCSR376UMR/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF84 ChIP-seq on human K562
experiment encode accession: ENCSR376UMR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR796QVL
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB534PZA
size range: 450-650

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS060ZJQ at ENCODE; https://www.encodeproject.org/ENCBS060ZJQ/


title: TF ChIP-seq from K562 (ENCLB205TSX)

description:
https://www.encodeproject.org/experiments/ENCSR935PEA/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-CREB5 ChIP-seq on human K562
experiment encode accession: ENCSR935PEA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR233HNT, ENCSR592PUP
encode release date: 2020-07-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB205TSX
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting CREB5

value: Michael Snyder, Stanford

value: ATCC

value: ENCBS204IPW at ENCODE; https://www.encodeproject.org/ENCBS204IPW/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from posterior cingulate gyrus (ENCLB836CAQ)

description:
https://www.encodeproject.org/experiments/ENCSR563CZB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR563CZB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB836CAQ

source_name: Homo sapiens female adult (90 or above years) posterior cingulate gyrus tissue with mild cognitive impairment

value: posterior cingulate gyrus

value: female

value: adult

value: ENCBS457VUW at ENCODE; https://www.encodeproject.org/ENCBS457VUW/

value: Derived from ENCODE donor ENCDO672KST; https://www.encodeproject.org/ENCDO672KST/


title: DNase-seq from posterior cingulate gyrus (ENCLB694VFZ)

description:
https://www.encodeproject.org/experiments/ENCSR195GUK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR195GUK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB694VFZ

source_name: Homo sapiens male adult (82 years) posterior cingulate gyrus tissue

value: tissue

value: male

value: 82 year

value: John Stamatoyannopoulos, UW

value: ENCBS413XRZ at ENCODE; https://www.encodeproject.org/ENCBS413XRZ/

value: Derived from ENCODE donor ENCDO407UTA; https://www.encodeproject.org/ENCDO407UTA/


title: TF ChIP-seq from K562 (ENCLB136WJF)

description:
https://www.encodeproject.org/experiments/ENCSR935PEA/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-CREB5 ChIP-seq on human K562
experiment encode accession: ENCSR935PEA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR233HNT, ENCSR592PUP
encode release date: 2020-07-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB136WJF
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS292QRB at ENCODE; https://www.encodeproject.org/ENCBS292QRB/


title: DNase-seq from T-cell (ENCLB270BPF)

description:
https://www.encodeproject.org/experiments/ENCSR561ZLY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR561ZLY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB270BPF

source_name: Homo sapiens male adult (21 years) T-cell primary cell

value: T-cell

value: primary cell

value: 21 year

value: AllCells

value: ENCBS966XLO at ENCODE; https://www.encodeproject.org/ENCBS966XLO/

value: Derived from ENCODE donor ENCDO394DKX; https://www.encodeproject.org/ENCDO394DKX/


title: TF ChIP-seq from K562 (ENCLB513GRA)

description:
https://www.encodeproject.org/experiments/ENCSR376RCX/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-GMEB1 ChIP-seq on human K562
experiment encode accession: ENCSR376RCX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR385JMD
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB513GRA
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting GMEB1

value: female

value: adult

value: Michael Snyder, Stanford

value: Kevin White

tag: passage number

value: ENCBS471YIQ at ENCODE; https://www.encodeproject.org/ENCBS471YIQ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from liver (ENCLB638FEH)

description:
https://www.encodeproject.org/experiments/ENCSR562FNN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR562FNN
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-12-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB638FEH

source_name: Homo sapiens female embryo (113 days) liver tissue

value: liver

value: tissue

value: embryonic

value: 113 day

value: John Stamatoyannopoulos, UW

value: BDRL

value: ENCBS275VNY at ENCODE; https://www.encodeproject.org/ENCBS275VNY/

value: Derived from ENCODE donor ENCDO987XTQ; https://www.encodeproject.org/ENCDO987XTQ/


title: DNase-seq from right lobe of liver (ENCLB767VHQ)

description:
https://www.encodeproject.org/experiments/ENCSR933GMM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR933GMM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB767VHQ

source_name: Homo sapiens female adult (41 years) right lobe of liver tissue, preserved by flash-freezing

value: right lobe of liver

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Yiing Lin, MD, PhD

value: ENCBS664ALT at ENCODE; https://www.encodeproject.org/ENCBS664ALT/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: DNase-seq from T-cell (ENCLB845QHY)

description:
https://www.encodeproject.org/experiments/ENCSR934IKS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR934IKS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB845QHY

source_name: Homo sapiens female adult (33 years) T-cell primary cell

value: T-cell

value: primary cell

value: female

value: adult

value: 33 year

value: AllCells

value: ENCBS122ACZ at ENCODE; https://www.encodeproject.org/ENCBS122ACZ/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: TF ChIP-seq from A549 (ENCLB431QMZ)

description:
https://www.encodeproject.org/experiments/ENCSR190GIW/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-NR5A2 ChIP-seq on human A549
experiment encode accession: ENCSR190GIW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR928HJI, ENCSR941GEM
encode release date: 2020-07-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB431QMZ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting NR5A2

value: cell line

value: male

value: 58 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS931TFT at ENCODE; https://www.encodeproject.org/ENCBS931TFT/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from K562 (ENCLB103OZB)

description:
https://www.encodeproject.org/experiments/ENCSR376RCX/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-GMEB1 ChIP-seq on human K562
experiment encode accession: ENCSR376RCX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR385JMD
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB103OZB
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Kevin White

value: ENCBS930PKD at ENCODE; https://www.encodeproject.org/ENCBS930PKD/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from thyroid gland (ENCLB600MLY)

description:
https://www.encodeproject.org/experiments/ENCSR195ONB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR195ONB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB600MLY

source_name: Homo sapiens female adult (53 years) thyroid gland tissue

value: thyroid gland

value: tissue

value: female

value: adult

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS937XZP at ENCODE; https://www.encodeproject.org/ENCBS937XZP/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: DNase-seq from head of caudate nucleus (ENCLB310ZZP)

description:
https://www.encodeproject.org/experiments/ENCSR558SUT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR558SUT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB310ZZP

source_name: Homo sapiens male adult (82 years) head of caudate nucleus tissue

value: head of caudate nucleus

value: male

value: 82 year

value: Rush University

value: ENCBS878YQJ at ENCODE; https://www.encodeproject.org/ENCBS878YQJ/

value: Derived from ENCODE donor ENCDO407UTA; https://www.encodeproject.org/ENCDO407UTA/


title: DNase-seq from central memory CD4-positive, alpha-beta T cell (ENCLB419NKM)

description:
https://www.encodeproject.org/experiments/ENCSR556ARS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR556ARS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB419NKM

source_name: Homo sapiens male adult (42 years) central memory CD4-positive, alpha-beta T primary cell

value: primary cell

value: 42 year

value: AllCells

value: ENCBS803LGZ at ENCODE; https://www.encodeproject.org/ENCBS803LGZ/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB417XMB)

description:
https://www.encodeproject.org/experiments/ENCSR930USX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR930USX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB417XMB

source_name: Homo sapiens male adult (42 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: ENCBS503DMW at ENCODE; https://www.encodeproject.org/ENCBS503DMW/


title: TF ChIP-seq from GM23338 (ENCLB287HRR)

description:
https://www.encodeproject.org/experiments/ENCSR555KFE/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF114 ChIP-seq on human GM23338
experiment encode accession: ENCSR555KFE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR518DKF, ENCSR627BZD
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB287HRR
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens GM23338 cell line genetically modified (insertion) using CRISPR targeting ZNF114

value: cell line

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS274RDI at ENCODE; https://www.encodeproject.org/ENCBS274RDI/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB977MZG)

description:
https://www.encodeproject.org/experiments/ENCSR937NLH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR937NLH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB977MZG

source_name: Homo sapiens male adult (38 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: ENCBS827NQX at ENCODE; https://www.encodeproject.org/ENCBS827NQX/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB100UKP)

description:
https://www.encodeproject.org/experiments/ENCSR559QCM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR559QCM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB100UKP

value: primary cell

value: AllCells

value: ENCBS394LGF at ENCODE; https://www.encodeproject.org/ENCBS394LGF/


title: TF ChIP-seq from A549 (ENCLB159AFW)

description:
https://www.encodeproject.org/experiments/ENCSR190GIW/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-NR5A2 ChIP-seq on human A549
experiment encode accession: ENCSR190GIW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR928HJI, ENCSR941GEM
encode release date: 2020-07-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB159AFW
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: 58 year

value: ENCBS439BBX at ENCODE; https://www.encodeproject.org/ENCBS439BBX/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from K562 (ENCLB789FOV)

description:
https://www.encodeproject.org/experiments/ENCSR187RGF/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF695 ChIP-seq on human K562
experiment encode accession: ENCSR187RGF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR015BRP, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB789FOV
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF695

value: cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF695.

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Kevin White

value: ENCBS394YIV at ENCODE; https://www.encodeproject.org/ENCBS394YIV/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB802HKJ)

description:
https://www.encodeproject.org/experiments/ENCSR928PKL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR928PKL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB802HKJ

source_name: Homo sapiens female adult (81 years) dorsolateral prefrontal cortex tissue with Cognitive impairment

value: dorsolateral prefrontal cortex

value: tissue

value: 81 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS884QJN at ENCODE; https://www.encodeproject.org/ENCBS884QJN/

value: Derived from ENCODE donor ENCDO077CCP; https://www.encodeproject.org/ENCDO077CCP/


title: DNase-seq from heart right ventricle (ENCLB708SZC)

description:
https://www.encodeproject.org/experiments/ENCSR928WMU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR928WMU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB708SZC

source_name: Homo sapiens male adult (66 years) heart right ventricle tissue

value: heart right ventricle

value: male

value: ischemic (EF 29% LVEDD 5.4; RV normal size, mild dysfunction)

value: 66 year

value: Michael Snyder, Stanford

value: Shin Lin

value: ENCBS516UIT at ENCODE; https://www.encodeproject.org/ENCBS516UIT/

value: Derived from ENCODE donor ENCDO926KEV; https://www.encodeproject.org/ENCDO926KEV/


title: DNase-seq from posterior cingulate gyrus (ENCLB152YGP)

description:
https://www.encodeproject.org/experiments/ENCSR555DLG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR555DLG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB152YGP

source_name: Homo sapiens male adult (90 or above years) posterior cingulate gyrus tissue with Alzheimer's disease

value: posterior cingulate gyrus

value: adult

value: 90 year or above

value: ENCBS371IWM at ENCODE; https://www.encodeproject.org/ENCBS371IWM/

value: Derived from ENCODE donor ENCDO921RVK; https://www.encodeproject.org/ENCDO921RVK/


title: DNase-seq from T-cell (ENCLB633RCS)

description:
https://www.encodeproject.org/experiments/ENCSR926SNI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR926SNI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB633RCS

source_name: Homo sapiens male adult (38 years) T-cell primary cell

value: T-cell

value: primary cell

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS381TMQ at ENCODE; https://www.encodeproject.org/ENCBS381TMQ/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: TF ChIP-seq from GM23338 (ENCLB583HSF)

description:
https://www.encodeproject.org/experiments/ENCSR555KFE/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF114 ChIP-seq on human GM23338
experiment encode accession: ENCSR555KFE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR518DKF, ENCSR627BZD
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB583HSF
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: male

value: 53 year

value: Michael Snyder

value: ENCBS587JWF at ENCODE; https://www.encodeproject.org/ENCBS587JWF/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: DNase-seq from ovary (ENCLB211MJH)

description:
https://www.encodeproject.org/experiments/ENCSR930PDT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR930PDT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB211MJH

source_name: Homo sapiens female adult (53 years) ovary tissue

value: ovary

value: tissue

value: female

value: adult

value: Kristin Ardlie

value: ENCBS044HUV at ENCODE; https://www.encodeproject.org/ENCBS044HUV/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: DNase-seq from T-cell (ENCLB103MZO)

description:
https://www.encodeproject.org/experiments/ENCSR186NTL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR186NTL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB103MZO

source_name: Homo sapiens female adult (43 years) T-cell primary cell

value: T-cell

value: primary cell

value: 43 year

value: John Stamatoyannopoulos, UW

value: ENCBS650JKU at ENCODE; https://www.encodeproject.org/ENCBS650JKU/

value: Derived from ENCODE donor ENCDO005XFE; https://www.encodeproject.org/ENCDO005XFE/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB176XKX)

description:
https://www.encodeproject.org/experiments/ENCSR376DAE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR376DAE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB176XKX

source_name: Homo sapiens male adult (20 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: male

value: 20 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS703HGD at ENCODE; https://www.encodeproject.org/ENCBS703HGD/

value: Derived from ENCODE donor ENCDO394DKX; https://www.encodeproject.org/ENCDO394DKX/


title: DNase-seq from right cardiac atrium (ENCLB793WXW)

description:
https://www.encodeproject.org/experiments/ENCSR374VQC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR374VQC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB793WXW

source_name: Homo sapiens female adult (46 years) right cardiac atrium tissue, preserved by flash-freezing

value: right cardiac atrium

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: adult

value: 46 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS659FGX at ENCODE; https://www.encodeproject.org/ENCBS659FGX/

value: Derived from ENCODE donor ENCDO411EVD; https://www.encodeproject.org/ENCDO411EVD/


title: DNase-seq from posterior cingulate gyrus (ENCLB679AQR)

description:
https://www.encodeproject.org/experiments/ENCSR924IHU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR924IHU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB679AQR

source_name: Homo sapiens female adult (84 years) posterior cingulate gyrus tissue

value: posterior cingulate gyrus

value: 84 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS977FJY at ENCODE; https://www.encodeproject.org/ENCBS977FJY/

value: Derived from ENCODE donor ENCDO461DJY; https://www.encodeproject.org/ENCDO461DJY/


title: DNase-seq from transverse colon (ENCLB442NNW)

description:
https://www.encodeproject.org/experiments/ENCSR923JYH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR923JYH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB442NNW

source_name: Homo sapiens male adult (37 years) transverse colon tissue

value: transverse colon

value: male

value: 37 year

value: Kristin Ardlie

value: ENCBS271FVX at ENCODE; https://www.encodeproject.org/ENCBS271FVX/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: DNase-seq from stomach (ENCLB440VCV)

description:
https://www.encodeproject.org/experiments/ENCSR177NIJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR177NIJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB440VCV

source_name: Homo sapiens male adult (37 years) stomach tissue

value: stomach

value: tissue

value: adult

value: ENCBS384ZDL at ENCODE; https://www.encodeproject.org/ENCBS384ZDL/


title: TF ChIP-seq from K562 (ENCLB390LNC)

description:
https://www.encodeproject.org/experiments/ENCSR553NTC/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF134 ChIP-seq on human K562
experiment encode accession: ENCSR553NTC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR733QVR, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB390LNC
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF134

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS599RPQ at ENCODE; https://www.encodeproject.org/ENCBS599RPQ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from placenta (ENCLB787ZTK)

description:
https://www.encodeproject.org/experiments/ENCSR922YEW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR922YEW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB787ZTK

source_name: Homo sapiens female embryo placenta tissue

value: placenta

value: embryonic

value: unknown

value: John Stamatoyannopoulos, UW

value: John Stamatoyannopoulos

value: ENCBS298GBP at ENCODE; https://www.encodeproject.org/ENCBS298GBP/

value: Derived from ENCODE donor ENCDO952QED; https://www.encodeproject.org/ENCDO952QED/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB469YPA)

description:
https://www.encodeproject.org/experiments/ENCSR366KPR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR366KPR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB469YPA

source_name: Homo sapiens male adult (38 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: male

value: adult

value: 38 year

value: AllCells

value: ENCBS144AOJ at ENCODE; https://www.encodeproject.org/ENCBS144AOJ/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from head of caudate nucleus (ENCLB080MUH)

description:
https://www.encodeproject.org/experiments/ENCSR176BPJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR176BPJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB080MUH

source_name: Homo sapiens female adult (90 or above years) head of caudate nucleus tissue with mild cognitive impairment

value: head of caudate nucleus

value: tissue

value: female

value: 90 year or above

value: Rush University

value: ENCBS658LOK at ENCODE; https://www.encodeproject.org/ENCBS658LOK/

value: Derived from ENCODE donor ENCDO915WZE; https://www.encodeproject.org/ENCDO915WZE/


title: DNase-seq from T-cell (ENCLB914UJS)

description:
https://www.encodeproject.org/experiments/ENCSR552TPH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR552TPH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB914UJS

source_name: Homo sapiens female adult (53 years) T-cell primary cell

value: T-cell

value: 53 year

value: John Stamatoyannopoulos, UW

value: ENCBS687LVR at ENCODE; https://www.encodeproject.org/ENCBS687LVR/

value: Derived from ENCODE donor ENCDO490PGB; https://www.encodeproject.org/ENCDO490PGB/


title: TF ChIP-seq from GM23338 (ENCLB934WLT)

description:
https://www.encodeproject.org/experiments/ENCSR918LRB/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF331 ChIP-seq on human GM23338
experiment encode accession: ENCSR918LRB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR518DKF, ENCSR178GOM
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB934WLT
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens GM23338 cell line genetically modified (insertion) using CRISPR targeting ZNF331

value: cell line

value: male

value: adult

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS692XOI at ENCODE; https://www.encodeproject.org/ENCBS692XOI/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: TF ChIP-seq from K562 (ENCLB514ZPI)

description:
https://www.encodeproject.org/experiments/ENCSR187RGF/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF695 ChIP-seq on human K562
experiment encode accession: ENCSR187RGF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR015BRP, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB514ZPI
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF695

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF695.

value: female

value: chronic myelogenous leukemia (CML)

value: Kevin White

value: ENCBS456UNB at ENCODE; https://www.encodeproject.org/ENCBS456UNB/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB584MHO)

description:
https://www.encodeproject.org/experiments/ENCSR173YSO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR173YSO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB584MHO

source_name: Homo sapiens female adult (79 years) dorsolateral prefrontal cortex tissue

value: dorsolateral prefrontal cortex

value: tissue

value: 79 year

value: Rush University

value: ENCBS509DXX at ENCODE; https://www.encodeproject.org/ENCBS509DXX/

value: Derived from ENCODE donor ENCDO609ZOG; https://www.encodeproject.org/ENCDO609ZOG/


title: DNase-seq from placenta (ENCLB711ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR552XJI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR552XJI
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-12-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB711ZZZ

source_name: Homo sapiens embryo (56 days) placenta tissue

value: placenta

value: not collected

value: embryonic

value: 56 day

value: John Stamatoyannopoulos, UW

value: BDRL

value: ENCBS723HLT at ENCODE; https://www.encodeproject.org/ENCBS723HLT/

value: Derived from ENCODE donor ENCDO114CJX; https://www.encodeproject.org/ENCDO114CJX/


title: TF ChIP-seq from A549 (ENCLB814PCP)

description:
https://www.encodeproject.org/experiments/ENCSR918GHT/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-FOSB ChIP-seq on human A549
experiment encode accession: ENCSR918GHT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR828TRV, ENCSR928HJI
encode release date: 2020-07-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB814PCP
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting FOSB

value: FOSB

value: cell line

value: male

value: adult

value: 58 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS967WAA at ENCODE; https://www.encodeproject.org/ENCBS967WAA/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from GM23338 (ENCLB357OKA)

description:
https://www.encodeproject.org/experiments/ENCSR918LRB/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF331 ChIP-seq on human GM23338
experiment encode accession: ENCSR918LRB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR518DKF, ENCSR178GOM
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB357OKA
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: 53 year

value: ENCBS930NXN at ENCODE; https://www.encodeproject.org/ENCBS930NXN/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: DNase-seq from ovary (ENCLB664LOS)

description:
https://www.encodeproject.org/experiments/ENCSR365NDK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR365NDK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB664LOS

source_name: Homo sapiens ovary tissue female adult (51 year)

value: ovary

value: tissue

value: female

value: 51 year

value: ENCBS279OPH at ENCODE; https://www.encodeproject.org/ENCBS279OPH/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: TF ChIP-seq from A549 (ENCLB842MCU)

description:
https://www.encodeproject.org/experiments/ENCSR171TDM/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-EHF ChIP-seq on human A549
experiment encode accession: ENCSR171TDM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615QEB, ENCSR928HJI
encode release date: 2020-07-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB842MCU
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting EHF

value: EHF

value: cell line

value: ENCBS788WCK at ENCODE; https://www.encodeproject.org/ENCBS788WCK/


title: DNase-seq from posterior cingulate gyrus (ENCLB537LCY)

description:
https://www.encodeproject.org/experiments/ENCSR365FVU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR365FVU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB537LCY

source_name: Homo sapiens male adult (78 years) posterior cingulate gyrus tissue

value: posterior cingulate gyrus

value: male

value: adult

value: 78 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS833YNN at ENCODE; https://www.encodeproject.org/ENCBS833YNN/

value: Derived from ENCODE donor ENCDO623FPG; https://www.encodeproject.org/ENCDO623FPG/


title: DNase-seq from placenta (ENCLB423VBC)

description:
https://www.encodeproject.org/experiments/ENCSR552RKI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR552RKI
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-12-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB423VBC

source_name: Homo sapiens embryo (102 days) placenta tissue

value: placenta

value: not collected

value: embryonic

value: 102 day

value: BDRL

value: ENCBS565KNL at ENCODE; https://www.encodeproject.org/ENCBS565KNL/

value: Derived from ENCODE donor ENCDO091OEF; https://www.encodeproject.org/ENCDO091OEF/


title: DNase-seq from head of caudate nucleus (ENCLB040NFD)

description:
https://www.encodeproject.org/experiments/ENCSR173NHL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR173NHL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB040NFD

source_name: Homo sapiens female adult (90 or above years) head of caudate nucleus tissue

value: head of caudate nucleus

value: tissue

value: female

value: 90 year or above

value: ENCBS896EUW at ENCODE; https://www.encodeproject.org/ENCBS896EUW/

value: Derived from ENCODE donor ENCDO081AHA; https://www.encodeproject.org/ENCDO081AHA/


title: TF ChIP-seq from K562 (ENCLB499LWJ)

description:
https://www.encodeproject.org/experiments/ENCSR553NTC/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF134 ChIP-seq on human K562
experiment encode accession: ENCSR553NTC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR733QVR, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB499LWJ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS825PSA at ENCODE; https://www.encodeproject.org/ENCBS825PSA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB594AGR)

description:
https://www.encodeproject.org/experiments/ENCSR363BTB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR363BTB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB594AGR

source_name: Homo sapiens male adult (21 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: primary cell

value: male

value: 21 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS101OHM at ENCODE; https://www.encodeproject.org/ENCBS101OHM/

value: Derived from ENCODE donor ENCDO781BMZ; https://www.encodeproject.org/ENCDO781BMZ/


title: TF ChIP-seq from A549 (ENCLB158RPO)

description:
https://www.encodeproject.org/experiments/ENCSR918GHT/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-FOSB ChIP-seq on human A549
experiment encode accession: ENCSR918GHT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR828TRV, ENCSR928HJI
encode release date: 2020-07-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB158RPO
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: FOSB

value: 58 year

value: Michael Snyder

value: ENCBS167BGB at ENCODE; https://www.encodeproject.org/ENCBS167BGB/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from K562 (ENCLB403ZPE)

description:
https://www.encodeproject.org/experiments/ENCSR918EFA/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF57 ChIP-seq on human K562
experiment encode accession: ENCSR918EFA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR504LIP, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB403ZPE
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF57

value: cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF57.

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: ENCBS890CJO at ENCODE; https://www.encodeproject.org/ENCBS890CJO/


title: TF ChIP-seq from A549 (ENCLB528GBQ)

description:
https://www.encodeproject.org/experiments/ENCSR171TDM/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-EHF ChIP-seq on human A549
experiment encode accession: ENCSR171TDM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615QEB, ENCSR928HJI
encode release date: 2020-07-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB528GBQ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: EHF

value: male

value: ENCBS527DYJ at ENCODE; https://www.encodeproject.org/ENCBS527DYJ/


title: TF ChIP-seq from K562 (ENCLB529CJE)

description:
https://www.encodeproject.org/experiments/ENCSR918EFA/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF57 ChIP-seq on human K562
experiment encode accession: ENCSR918EFA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR504LIP, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB529CJE
size range: 450-650

value: Kevin White

value: ENCBS543IDJ at ENCODE; https://www.encodeproject.org/ENCBS543IDJ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB713TFW)

description:
https://www.encodeproject.org/experiments/ENCSR549PVK/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-PATZ1 ChIP-seq on human K562
experiment encode accession: ENCSR549PVK
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR233HNT, ENCSR616LTS
encode release date: 2020-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB713TFW
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting PATZ1

value: ATCC

value: ENCBS774MUH at ENCODE; https://www.encodeproject.org/ENCBS774MUH/


title: TF ChIP-seq from K562 (ENCLB436HOE)

description:
https://www.encodeproject.org/experiments/ENCSR549PVK/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-PATZ1 ChIP-seq on human K562
experiment encode accession: ENCSR549PVK
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR233HNT, ENCSR616LTS
encode release date: 2020-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB436HOE
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: ENCBS196FSV at ENCODE; https://www.encodeproject.org/ENCBS196FSV/


title: DNase-seq from head of caudate nucleus (ENCLB312QXY)

description:
https://www.encodeproject.org/experiments/ENCSR916MHX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR916MHX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB312QXY

source_name: Homo sapiens male adult (78 years) head of caudate nucleus tissue

value: head of caudate nucleus

value: tissue

value: 78 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS017GWZ at ENCODE; https://www.encodeproject.org/ENCBS017GWZ/

value: Derived from ENCODE donor ENCDO623FPG; https://www.encodeproject.org/ENCDO623FPG/


title: TF ChIP-seq from K562 (ENCLB337PEN)

description:
https://www.encodeproject.org/experiments/ENCSR360UHC/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ARID3B ChIP-seq on human K562
experiment encode accession: ENCSR360UHC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR182QFE
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB337PEN
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ARID3B

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: ENCBS555NHT at ENCODE; https://www.encodeproject.org/ENCBS555NHT/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB831HOO)

description:
https://www.encodeproject.org/experiments/ENCSR921PPJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR921PPJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB831HOO

source_name: Homo sapiens female adult (83 years) dorsolateral prefrontal cortex tissue with mild cognitive impairment

value: dorsolateral prefrontal cortex

value: 83 year

value: ENCBS653RWM at ENCODE; https://www.encodeproject.org/ENCBS653RWM/

value: Derived from ENCODE donor ENCDO832DBZ; https://www.encodeproject.org/ENCDO832DBZ/


title: DNase-seq from lower leg skin (ENCLB508NVS)

description:
https://www.encodeproject.org/experiments/ENCSR361DND/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR361DND
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB508NVS

source_name: Homo sapiens male adult (37 years) lower leg skin tissue

value: lower leg skin

value: tissue

value: male

value: 37 year

value: Kristin Ardlie

value: ENCBS414XPF at ENCODE; https://www.encodeproject.org/ENCBS414XPF/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: DNase-seq from upper lobe of left lung (ENCLB058POW)

description:
https://www.encodeproject.org/experiments/ENCSR909YET/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR909YET
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB058POW

source_name: Homo sapiens male adult (60 years) upper lobe of left lung tissue, preserved by flash-freezing

value: upper lobe of left lung

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: 60 year

value: Yiing Lin, MD, PhD

value: ENCBS956JIK at ENCODE; https://www.encodeproject.org/ENCBS956JIK/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: DNase-seq from posterior cingulate gyrus (ENCLB372ZHY)

description:
https://www.encodeproject.org/experiments/ENCSR908MUU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR908MUU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB372ZHY

source_name: Homo sapiens female adult (90 or above years) posterior cingulate gyrus tissue with mild cognitive impairment

value: posterior cingulate gyrus

value: female

value: adult

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS946FWU at ENCODE; https://www.encodeproject.org/ENCBS946FWU/

value: Derived from ENCODE donor ENCDO204VNL; https://www.encodeproject.org/ENCDO204VNL/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB109DNH)

description:
https://www.encodeproject.org/experiments/ENCSR904LMG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR904LMG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB109DNH

source_name: Homo sapiens male adult (87 years) dorsolateral prefrontal cortex tissue with Cognitive impairment, Alzheimer's disease

value: dorsolateral prefrontal cortex

value: tissue

value: male

value: 87 year

value: ENCBS823YDG at ENCODE; https://www.encodeproject.org/ENCBS823YDG/

value: Derived from ENCODE donor ENCDO776JEI; https://www.encodeproject.org/ENCDO776JEI/


title: DNase-seq from thyroid gland (ENCLB225SQG)

description:
https://www.encodeproject.org/experiments/ENCSR549NRK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR549NRK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB225SQG

source_name: Homo sapiens male adult (54 years) thyroid gland tissue

value: thyroid gland

value: 54 year

value: Kristin Ardlie

value: ENCBS727PXI at ENCODE; https://www.encodeproject.org/ENCBS727PXI/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB649BUL)

description:
https://www.encodeproject.org/experiments/ENCSR546FUC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR546FUC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB649BUL

source_name: Homo sapiens male adult (42 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: adult

value: 42 year

value: AllCells

value: ENCBS777ETM at ENCODE; https://www.encodeproject.org/ENCBS777ETM/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: DNase-seq from uterus (ENCLB872PDH)

description:
https://www.encodeproject.org/experiments/ENCSR545ADK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR545ADK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB872PDH

source_name: Homo sapiens female adult (59 years) uterus tissue, preserved by flash-freezing

value: uterus

value: tissue

value: female

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS696CPR at ENCODE; https://www.encodeproject.org/ENCBS696CPR/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: DNase-seq from right lobe of liver (ENCLB959CLA)

description:
https://www.encodeproject.org/experiments/ENCSR909HFI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR909HFI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB959CLA

source_name: Homo sapiens female adult (53 years) right lobe of liver tissue

value: right lobe of liver

value: 53 year

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS129TCL at ENCODE; https://www.encodeproject.org/ENCBS129TCL/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB812QRV)

description:
https://www.encodeproject.org/experiments/ENCSR904GDU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR904GDU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB812QRV

value: CD4-positive, alpha-beta T cell

value: primary cell

value: male

value: adult

value: 42 year

value: AllCells

value: ENCBS194XOD at ENCODE; https://www.encodeproject.org/ENCBS194XOD/


title: DNase-seq from DND-41 (ENCLB788ZTX)

description:
https://www.encodeproject.org/experiments/ENCSR903SKE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR903SKE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB788ZTX

source_name: Homo sapiens DND-41 cell line

value: cell line

value: T-acute lymphoblastic leukemia (T-ALL; type III cortical)

value: child

value: 13 year

value: ATCC

value: ENCBS518YBY at ENCODE; https://www.encodeproject.org/ENCBS518YBY/

value: Derived from ENCODE donor ENCDO183AAA; https://www.encodeproject.org/ENCDO183AAA/


title: DNase-seq from left ventricle myocardium superior (ENCLB816NAE)

description:
https://www.encodeproject.org/experiments/ENCSR355WAJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR355WAJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB816NAE

source_name: Homo sapiens male adult (60 years) left ventricle myocardium superior tissue, preserved by flash-freezing

value: left ventricle myocardium superior

value: tissue

value: Superior wall of left ventricle.

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: 60 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS284AOV at ENCODE; https://www.encodeproject.org/ENCBS284AOV/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: DNase-seq from heart right ventricle (ENCLB845QNL)

description:
https://www.encodeproject.org/experiments/ENCSR356RNZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR356RNZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB845QNL

source_name: Homo sapiens female adult (46 years) heart right ventricle tissue, preserved by flash-freezing

value: heart right ventricle

value: female

value: DM:no; HTN:no; CAD:no

value: adult

value: 46 year

value: ENCBS216RZX at ENCODE; https://www.encodeproject.org/ENCBS216RZX/

value: Derived from ENCODE donor ENCDO411EVD; https://www.encodeproject.org/ENCDO411EVD/


title: TF ChIP-seq from K562 (ENCLB847HHX)

description:
https://www.encodeproject.org/experiments/ENCSR360UHC/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ARID3B ChIP-seq on human K562
experiment encode accession: ENCSR360UHC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR182QFE
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB847HHX
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Kevin White

value: ENCBS572HVN at ENCODE; https://www.encodeproject.org/ENCBS572HVN/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from DND-41 (ENCLB625LEA)

description:
https://www.encodeproject.org/experiments/ENCSR903SKE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR903SKE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB625LEA

value: male

value: T-acute lymphoblastic leukemia (T-ALL; type III cortical)

value: child

value: 13 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS611JZO at ENCODE; https://www.encodeproject.org/ENCBS611JZO/

value: Derived from ENCODE donor ENCDO183AAA; https://www.encodeproject.org/ENCDO183AAA/


title: DNase-seq from upper lobe of right lung (ENCLB984MUH)

description:
https://www.encodeproject.org/experiments/ENCSR357AWH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR357AWH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB984MUH

source_name: Homo sapiens male adult (60 years) upper lobe of right lung tissue, preserved by flash-freezing

value: upper lobe of right lung

value: tissue

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: adult

value: 60 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS474BPV at ENCODE; https://www.encodeproject.org/ENCBS474BPV/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: DNase-seq from endodermal cell (ENCLB833UTO)

description:
https://www.encodeproject.org/experiments/ENCSR166KPV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR166KPV
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-12-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB833UTO

source_name: Homo sapiens female embryo (5 days) endodermal in vitro differentiated cells

value: endodermal cell

value: in vitro differentiated cells

value: female

value: healthy

value: embryonic

value: 5 day

value: Stephen Dalton

value: ENCBS835CLB at ENCODE; https://www.encodeproject.org/ENCBS835CLB/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: TF ChIP-seq from K562 (ENCLB409DRU)

description:
https://www.encodeproject.org/experiments/ENCSR898IDK/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF23 ChIP-seq on human K562
experiment encode accession: ENCSR898IDK
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR580RLH, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB409DRU
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF23

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Kevin White

value: ENCBS319KEI at ENCODE; https://www.encodeproject.org/ENCBS319KEI/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from endodermal cell (ENCLB393NTX)

description:
https://www.encodeproject.org/experiments/ENCSR166KPV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR166KPV
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-12-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB393NTX

value: John Stamatoyannopoulos, UW

value: ENCBS088TSK at ENCODE; https://www.encodeproject.org/ENCBS088TSK/


title: TF ChIP-seq from GM12878 (ENCLB520CKA)

description:
https://www.encodeproject.org/experiments/ENCSR903MVU/
***************
biological replicate number: 1
technical replicate number: 1
description: GM12878 immortalized cell line stably expressing C-terminal eGFP-MAZ fusion protein.
experiment encode accession: ENCSR903MVU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR583RUC
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB520CKA
size range: 450-650

source_name: Homo sapiens GM12878 cell line genetically modified (insertion) using CRISPR targeting MAZ

value: MAZ

value: GM12878 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to MAZ.

value: unknown

value: adult

value: Michael Snyder, Stanford

value: ENCBS496NMZ at ENCODE; https://www.encodeproject.org/ENCBS496NMZ/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/


title: TF ChIP-seq from GM12878 (ENCLB948TXP)

description:
https://www.encodeproject.org/experiments/ENCSR903MVU/
***************
biological replicate number: 2
technical replicate number: 1
description: GM12878 immortalized cell line stably expressing C-terminal eGFP-MAZ fusion protein.
experiment encode accession: ENCSR903MVU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR583RUC
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB948TXP
size range: 450-650

value: female

value: ENCBS211HKF at ENCODE; https://www.encodeproject.org/ENCBS211HKF/


title: TF ChIP-seq from K562 (ENCLB646GIZ)

description:
https://www.encodeproject.org/experiments/ENCSR164RIC/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF444 ChIP-seq on human K562
experiment encode accession: ENCSR164RIC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR293CYB, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB646GIZ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF444

value: cell line

value: ENCBS217STU at ENCODE; https://www.encodeproject.org/ENCBS217STU/


title: DNase-seq from effector CD4-positive, alpha-beta T cell (ENCLB069MMV)

description:
https://www.encodeproject.org/experiments/ENCSR355ARR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR355ARR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB069MMV

source_name: Homo sapiens male adult (56 years) effector CD4-positive, alpha-beta T primary cell

value: primary cell

value: male

value: 56 year

value: AllCells

value: ENCBS660HTL at ENCODE; https://www.encodeproject.org/ENCBS660HTL/

value: Derived from ENCODE donor ENCDO100JZM; https://www.encodeproject.org/ENCDO100JZM/


title: TF ChIP-seq from K562 (ENCLB262CWC)

description:
https://www.encodeproject.org/experiments/ENCSR164RIC/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF444 ChIP-seq on human K562
experiment encode accession: ENCSR164RIC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR293CYB, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB262CWC
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Kevin White

value: ENCBS537AKP at ENCODE; https://www.encodeproject.org/ENCBS537AKP/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from T-cell (ENCLB583TSO)

description:
https://www.encodeproject.org/experiments/ENCSR541PUY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR541PUY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB583TSO

source_name: Homo sapiens male adult (30 years) T-cell primary cell

value: T-cell

value: adult

value: 30 year

value: John Stamatoyannopoulos, UW

value: ENCBS121IJS at ENCODE; https://www.encodeproject.org/ENCBS121IJS/

value: Derived from ENCODE donor ENCDO656FVT; https://www.encodeproject.org/ENCDO656FVT/


title: DNase-seq from T-helper 9 cell (ENCLB470DMZ)

description:
https://www.encodeproject.org/experiments/ENCSR542GKI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR542GKI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB470DMZ

source_name: Homo sapiens female adult (25 years) T-helper 9 primary cell

value: T-helper 9 cell

value: primary cell

value: female

value: 25 year

value: ENCBS955HNA at ENCODE; https://www.encodeproject.org/ENCBS955HNA/

value: Derived from ENCODE donor ENCDO011KGM; https://www.encodeproject.org/ENCDO011KGM/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB906DHE)

description:
https://www.encodeproject.org/experiments/ENCSR163QXS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR163QXS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB906DHE

source_name: Homo sapiens female adult (33 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: 33 year

value: AllCells

value: ENCBS158EDC at ENCODE; https://www.encodeproject.org/ENCBS158EDC/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: DNase-seq from adrenal gland (ENCLB867BKQ)

description:
https://www.encodeproject.org/experiments/ENCSR541JMK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR541JMK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB867BKQ

source_name: Homo sapiens female adult (47 years) adrenal gland tissue, preserved by flash-freezing

value: adrenal gland

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: 47 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS450CEG at ENCODE; https://www.encodeproject.org/ENCBS450CEG/

value: Derived from ENCODE donor ENCDO528BHB; https://www.encodeproject.org/ENCDO528BHB/


title: DNase-seq from posterior cingulate gyrus (ENCLB607GGZ)

description:
https://www.encodeproject.org/experiments/ENCSR896LMT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR896LMT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB607GGZ

source_name: Homo sapiens female adult (90 or above years) posterior cingulate gyrus tissue

value: posterior cingulate gyrus

value: female

value: adult

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS411IUD at ENCODE; https://www.encodeproject.org/ENCBS411IUD/

value: Derived from ENCODE donor ENCDO006DAA; https://www.encodeproject.org/ENCDO006DAA/


title: DNase-seq from T-cell (ENCLB679WXR)

description:
https://www.encodeproject.org/experiments/ENCSR540VTN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR540VTN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB679WXR

source_name: Homo sapiens male adult (40 years) T-cell primary cell

value: T-cell

value: primary cell

value: male

value: 40 year

value: AllCells

value: ENCBS319SBV at ENCODE; https://www.encodeproject.org/ENCBS319SBV/

value: Derived from ENCODE donor ENCDO804YUR; https://www.encodeproject.org/ENCDO804YUR/


title: DNase-seq from head of caudate nucleus (ENCLB275TBD)

description:
https://www.encodeproject.org/experiments/ENCSR895TUV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR895TUV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB275TBD

source_name: Homo sapiens female adult (87 years) head of caudate nucleus tissue with mild cognitive impairment

value: head of caudate nucleus

value: tissue

value: 87 year

value: ENCBS340LME at ENCODE; https://www.encodeproject.org/ENCBS340LME/

value: Derived from ENCODE donor ENCDO354SJE; https://www.encodeproject.org/ENCDO354SJE/


title: TF ChIP-seq from K562 (ENCLB469POH)

description:
https://www.encodeproject.org/experiments/ENCSR898IDK/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF23 ChIP-seq on human K562
experiment encode accession: ENCSR898IDK
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR580RLH, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB469POH
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS365WVD at ENCODE; https://www.encodeproject.org/ENCBS365WVD/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from right lobe of liver (ENCLB887VZU)

description:
https://www.encodeproject.org/experiments/ENCSR164TBP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR164TBP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB887VZU

source_name: Homo sapiens female adult (47 years) right lobe of liver tissue, preserved by flash-freezing

value: right lobe of liver

value: DM:no; HTN:yes; CAD:no

value: 47 year

value: Yiing Lin, MD, PhD

value: ENCBS955TND at ENCODE; https://www.encodeproject.org/ENCBS955TND/

value: Derived from ENCODE donor ENCDO912EIY; https://www.encodeproject.org/ENCDO912EIY/


title: DNase-seq from head of caudate nucleus (ENCLB249XUU)

description:
https://www.encodeproject.org/experiments/ENCSR163GMC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR163GMC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB249XUU

source_name: Homo sapiens male adult (84 years) head of caudate nucleus tissue with Cognitive impairment, Alzheimer's disease

value: head of caudate nucleus

value: tissue

value: male

value: 84 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS509GVT at ENCODE; https://www.encodeproject.org/ENCBS509GVT/

value: Derived from ENCODE donor ENCDO284KGV; https://www.encodeproject.org/ENCDO284KGV/


title: DNase-seq from head of caudate nucleus (ENCLB450KPZ)

description:
https://www.encodeproject.org/experiments/ENCSR163BSC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR163BSC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB450KPZ

source_name: Homo sapiens female adult (90 or above years) head of caudate nucleus tissue with mild cognitive impairment

value: female

value: adult

value: 90 year or above

value: ENCBS589LSC at ENCODE; https://www.encodeproject.org/ENCBS589LSC/

value: Derived from ENCODE donor ENCDO204VNL; https://www.encodeproject.org/ENCDO204VNL/


title: DNase-seq from HAP-1 (ENCLB057UMK)

description:
https://www.encodeproject.org/experiments/ENCSR895KTN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR895KTN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB057UMK

source_name: Homo sapiens HAP-1 cell line

value: cell line

value: 44 year

value: Haplogen Genomics

value: ENCBS035OSQ at ENCODE; https://www.encodeproject.org/ENCBS035OSQ/

value: Derived from ENCODE donor ENCDO763VKT; https://www.encodeproject.org/ENCDO763VKT/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB630JAX)

description:
https://www.encodeproject.org/experiments/ENCSR162JNV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR162JNV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB630JAX

source_name: Homo sapiens male adult (38 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: primary cell

value: 38 year

value: AllCells

value: ENCBS054OHJ at ENCODE; https://www.encodeproject.org/ENCBS054OHJ/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from body of pancreas (ENCLB316OUX)

description:
https://www.encodeproject.org/experiments/ENCSR539WBA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR539WBA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB316OUX

source_name: Homo sapiens male adult (37 years) body of pancreas tissue

value: body of pancreas

value: tissue

value: male

value: 37 year

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS120GNH at ENCODE; https://www.encodeproject.org/ENCBS120GNH/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: TF ChIP-seq from A549 (ENCLB403MBP)

description:
https://www.encodeproject.org/experiments/ENCSR161CZA/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ATOH8 ChIP-seq on human A549
experiment encode accession: ENCSR161CZA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR928HJI, ENCSR641LIQ
encode release date: 2020-07-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB403MBP
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting ATOH8

value: cell line

value: adult

value: 58 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS340ICI at ENCODE; https://www.encodeproject.org/ENCBS340ICI/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from A549 (ENCLB972GPF)

description:
https://www.encodeproject.org/experiments/ENCSR161CZA/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ATOH8 ChIP-seq on human A549
experiment encode accession: ENCSR161CZA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR928HJI, ENCSR641LIQ
encode release date: 2020-07-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB972GPF
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: ENCBS945LTN at ENCODE; https://www.encodeproject.org/ENCBS945LTN/


title: TF ChIP-seq from K562 (ENCLB698ARH)

description:
https://www.encodeproject.org/experiments/ENCSR536CBU/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZBTB9 ChIP-seq on human K562
experiment encode accession: ENCSR536CBU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR231MJJ, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB698ARH
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZBTB9

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZBTB9.

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Kevin White

value: ENCBS185PIR at ENCODE; https://www.encodeproject.org/ENCBS185PIR/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from lower lobe of left lung (ENCLB614PSB)

description:
https://www.encodeproject.org/experiments/ENCSR537BGX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR537BGX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB614PSB

source_name: Homo sapiens female adult (61 years) lower lobe of left lung tissue, preserved by flash-freezing

value: lower lobe of left lung

value: tissue

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: 61 year

value: Yiing Lin, MD, PhD

value: ENCBS158LOW at ENCODE; https://www.encodeproject.org/ENCBS158LOW/

value: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/


title: DNase-seq from Right ventricle myocardium superior (ENCLB342HZE)

description:
https://www.encodeproject.org/experiments/ENCSR895GSY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR895GSY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB342HZE

source_name: Homo sapiens male adult (60 years) Right ventricle myocardium superior tissue, preserved by flash-freezing

value: Right ventricle myocardium superior

value: Superior wall of right ventricle.

value: male

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: adult

value: 60 year

value: Michael Snyder, Stanford

value: ENCBS949ICK at ENCODE; https://www.encodeproject.org/ENCBS949ICK/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: TF ChIP-seq from K562 (ENCLB338LOH)

description:
https://www.encodeproject.org/experiments/ENCSR536CBU/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZBTB9 ChIP-seq on human K562
experiment encode accession: ENCSR536CBU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR231MJJ, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB338LOH
size range: 450-650

value: cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZBTB9.

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Kevin White

value: ENCBS118AQY at ENCODE; https://www.encodeproject.org/ENCBS118AQY/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB230BYK)

description:
https://www.encodeproject.org/experiments/ENCSR532DBH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR532DBH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB230BYK

source_name: Homo sapiens female adult (86 years) dorsolateral prefrontal cortex tissue with Cognitive impairment

value: dorsolateral prefrontal cortex

value: tissue

value: 86 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS441XNG at ENCODE; https://www.encodeproject.org/ENCBS441XNG/

value: Derived from ENCODE donor ENCDO845GYA; https://www.encodeproject.org/ENCDO845GYA/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB113IXK)

description:
https://www.encodeproject.org/experiments/ENCSR155NBS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR155NBS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB113IXK

value: CD4-positive, alpha-beta T cell

value: primary cell

value: adult

value: 33 year

value: AllCells

value: ENCBS064MNR at ENCODE; https://www.encodeproject.org/ENCBS064MNR/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: DNase-seq from posterior cingulate gyrus (ENCLB104FJY)

description:
https://www.encodeproject.org/experiments/ENCSR887VUC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR887VUC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB104FJY

source_name: Homo sapiens male adult (73 years) posterior cingulate gyrus tissue with Cognitive impairment, Alzheimer's disease

value: posterior cingulate gyrus

value: male

value: 73 year

value: ENCBS571IQG at ENCODE; https://www.encodeproject.org/ENCBS571IQG/

value: Derived from ENCODE donor ENCDO059BOC; https://www.encodeproject.org/ENCDO059BOC/


title: DNase-seq from HL-60 (ENCLB145WLK)

description:
https://www.encodeproject.org/experiments/ENCSR889WKL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR889WKL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB145WLK

source_name: Homo sapiens HL-60 cell line

value: cell line

value: female

value: acute promyelocytic leukemia

value: 36 year

value: ATCC

value: ENCBS782WHC at ENCODE; https://www.encodeproject.org/ENCBS782WHC/

value: Derived from ENCODE donor ENCDO000AAM; https://www.encodeproject.org/ENCDO000AAM/