title: TF ChIP-seq from K562 (ENCLB712VRK)

description:
https://www.encodeproject.org/experiments/ENCSR026KKZ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZBTB17 ChIP-seq on human K562
experiment encode accession: ENCSR026KKZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR405WWL, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB712VRK
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZBTB17

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZBTB17.

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS126ZOX at ENCODE; https://www.encodeproject.org/ENCBS126ZOX/


title: TF ChIP-seq from HepG2 (ENCLB719BSK)

status: Public on Mar 29 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR803IYP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR803IYP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB719BSK
fragmentation methods: sonication (generic)

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZBTB49

tag: antibody

tag: line

value: cell line

tag: biosample encode accession

tag: Sex

value: male

tag: health state

value: hepatocellular carcinoma

tag: dev stage

value: child

tag: age

value: 15 year

tag: lab

value: Richard Myers, HAIB

tag: source

value: Richard Myers

tag: link

value: ENCBS409TOH at ENCODE; https://www.encodeproject.org/ENCBS409TOH/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from K562 (ENCLB876UFE)

description:
https://www.encodeproject.org/experiments/ENCSR026KKZ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZBTB17 ChIP-seq on human K562
experiment encode accession: ENCSR026KKZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR405WWL, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB876UFE
size range: 450-650

tag: description

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS610LIG at ENCODE; https://www.encodeproject.org/ENCBS610LIG/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from ascending aorta (ENCLB143MAH)

description:
https://www.encodeproject.org/experiments/ENCSR422IIZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR422IIZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB143MAH

source_name: Homo sapiens female adult (51 years) ascending aorta tissue

value: ascending aorta

value: tissue

value: female

value: 51 year

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS822FEC at ENCODE; https://www.encodeproject.org/ENCBS822FEC/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: DNase-seq from heart left ventricle (ENCLB760QKH)

description:
https://www.encodeproject.org/experiments/ENCSR735NTV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR735NTV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB760QKH

source_name: Homo sapiens male adult (54 years) heart left ventricle tissue

value: heart left ventricle

value: male

value: ischemic (EF 13 %, LVEDD 7.1; RV severe dilation, severe dysfunction)

value: adult

value: 54 year

value: Shin Lin

value: ENCBS343ZPN at ENCODE; https://www.encodeproject.org/ENCBS343ZPN/

value: Derived from ENCODE donor ENCDO039RUH; https://www.encodeproject.org/ENCDO039RUH/


title: TF ChIP-seq from K562 (ENCLB127BFT)

description:
https://www.encodeproject.org/experiments/ENCSR231PDA/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF319 ChIP-seq on human K562
experiment encode accession: ENCSR231PDA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR012KTG, ENCSR984XPC
encode release date: 2020-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB127BFT
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF319

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: ATCC

value: ENCBS317FTB at ENCODE; https://www.encodeproject.org/ENCBS317FTB/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from CD14-positive monocyte (ENCLB647EUU)

description:
https://www.encodeproject.org/experiments/ENCSR277ZHX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR277ZHX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB647EUU
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500

source_name: Homo sapiens male adult (40 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: 40 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS625RHF at ENCODE; https://www.encodeproject.org/ENCBS625RHF/

value: Derived from ENCODE donor ENCDO661IWU; https://www.encodeproject.org/ENCDO661IWU/


title: TF ChIP-seq from K562 (ENCLB096EAY)

description:
https://www.encodeproject.org/experiments/ENCSR231PDA/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF319 ChIP-seq on human K562
experiment encode accession: ENCSR231PDA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR012KTG, ENCSR984XPC
encode release date: 2020-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB096EAY
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: female

value: adult

value: ENCBS193UAV at ENCODE; https://www.encodeproject.org/ENCBS193UAV/


title: TF ChIP-seq from K562 (ENCLB208TJQ)

description:
https://www.encodeproject.org/experiments/ENCSR087TYG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR087TYG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR080NUS
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB208TJQ
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting NR2F6

value: cell line

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS852XOJ at ENCODE; https://www.encodeproject.org/ENCBS852XOJ/


title: TF ChIP-seq from K562 (ENCLB817CYI)

description:
https://www.encodeproject.org/experiments/ENCSR087TYG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR087TYG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR080NUS
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB817CYI
fragmentation methods: sonication (generic)

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS046ZGB at ENCODE; https://www.encodeproject.org/ENCBS046ZGB/


title: TF ChIP-seq from HepG2 (ENCLB577FTX)

description:
https://www.encodeproject.org/experiments/ENCSR474YDA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR474YDA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB577FTX
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting YEATS4

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: ENCBS986FQL at ENCODE; https://www.encodeproject.org/ENCBS986FQL/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from ovary (ENCLB661QQO)

description:
https://www.encodeproject.org/experiments/ENCSR732RIC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR732RIC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB661QQO

source_name: Homo sapiens female adult (47 years) ovary tissue, preserved by flash-freezing

value: ovary

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: 47 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS170SGB at ENCODE; https://www.encodeproject.org/ENCBS170SGB/

value: Derived from ENCODE donor ENCDO528BHB; https://www.encodeproject.org/ENCDO528BHB/


title: TF ChIP-seq from A549 (ENCLB326FJV)

description:
https://www.encodeproject.org/experiments/ENCSR419VVI/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF624 ChIP-seq on human A549
experiment encode accession: ENCSR419VVI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR279OHT, ENCSR308QHN
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB326FJV
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting ZNF624

value: cell line

value: adult

value: 58 year

value: Michael Snyder

value: ENCBS772AVG at ENCODE; https://www.encodeproject.org/ENCBS772AVG/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from HepG2 (ENCLB405UFT)

description:
https://www.encodeproject.org/experiments/ENCSR474YDA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR474YDA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB405UFT
fragmentation methods: sonication (generic)

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS441RDP at ENCODE; https://www.encodeproject.org/ENCBS441RDP/


title: TF ChIP-seq from HepG2 (ENCLB105MKO)

description:
https://www.encodeproject.org/experiments/ENCSR479RZV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR479RZV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB105MKO
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting CBFB

value: CBFB

value: ENCBS327VWY at ENCODE; https://www.encodeproject.org/ENCBS327VWY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from A549 (ENCLB424LDB)

description:
https://www.encodeproject.org/experiments/ENCSR419VVI/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF624 ChIP-seq on human A549
experiment encode accession: ENCSR419VVI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR279OHT, ENCSR308QHN
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB424LDB
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: Michael Snyder, Stanford

value: ENCBS327BYF at ENCODE; https://www.encodeproject.org/ENCBS327BYF/


title: TF ChIP-seq from HepG2 (ENCLB338WAD)

description:
https://www.encodeproject.org/experiments/ENCSR080UEM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR080UEM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB338WAD
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF143

value: cell line

value: ENCBS637ZLU at ENCODE; https://www.encodeproject.org/ENCBS637ZLU/


title: DNase-seq from T-cell (ENCLB753CSX)

description:
https://www.encodeproject.org/experiments/ENCSR420HOT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR420HOT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB753CSX

source_name: Homo sapiens male adult (38 years) T-cell primary cell

value: T-cell

value: primary cell

value: adult

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS205SJA at ENCODE; https://www.encodeproject.org/ENCBS205SJA/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: TF ChIP-seq from HepG2 (ENCLB844JXX)

description:
https://www.encodeproject.org/experiments/ENCSR080UEM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR080UEM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB844JXX
fragmentation methods: sonication (generic)

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS765QWD at ENCODE; https://www.encodeproject.org/ENCBS765QWD/


title: DNase-seq from posterior cingulate gyrus (ENCLB946NDH)

description:
https://www.encodeproject.org/experiments/ENCSR730IHD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR730IHD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB946NDH

source_name: Homo sapiens female adult (90 or above years) posterior cingulate gyrus tissue with Alzheimer's disease

value: posterior cingulate gyrus

value: tissue

value: female

value: 90 year or above

value: Rush University

value: ENCBS436PMU at ENCODE; https://www.encodeproject.org/ENCBS436PMU/

value: Derived from ENCODE donor ENCDO150EBZ; https://www.encodeproject.org/ENCDO150EBZ/


title: TF ChIP-seq from HepG2 (ENCLB706JCE)

description:
https://www.encodeproject.org/experiments/ENCSR080EKH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR080EKH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB706JCE
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting MATR3

value: cell line

value: ENCBS657VLS at ENCODE; https://www.encodeproject.org/ENCBS657VLS/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB680UUU)

description:
https://www.encodeproject.org/experiments/ENCSR080EKH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR080EKH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB680UUU
fragmentation methods: sonication (generic)

value: male

value: ENCBS950SDK at ENCODE; https://www.encodeproject.org/ENCBS950SDK/


title: DNase-seq from T-cell (ENCLB867SYV)

description:
https://www.encodeproject.org/experiments/ENCSR025EYJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR025EYJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB867SYV

source_name: Homo sapiens male adult (48 years) T-cell primary cell

value: T-cell

value: primary cell

value: adult

value: 48 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS715JVQ at ENCODE; https://www.encodeproject.org/ENCBS715JVQ/

value: Derived from ENCODE donor ENCDO642VEO; https://www.encodeproject.org/ENCDO642VEO/


title: TF ChIP-seq from K562 (ENCLB813RAS)

description:
https://www.encodeproject.org/experiments/ENCSR228OQM/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-CLOCK ChIP-seq on human K562
experiment encode accession: ENCSR228OQM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR493HMV
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB813RAS
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting CLOCK

value: CLOCK

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS453MAT at ENCODE; https://www.encodeproject.org/ENCBS453MAT/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from tibial artery (ENCLB439JVN)

description:
https://www.encodeproject.org/experiments/ENCSR080ISA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR080ISA
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB439JVN
instrument models: Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens female adult (53 years) tibial artery tissue

value: tibial artery

value: tissue

value: Kristin Ardlie

value: ENCBS721ZTH at ENCODE; https://www.encodeproject.org/ENCBS721ZTH/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: TF ChIP-seq from K562 (ENCLB666AYK)

description:
https://www.encodeproject.org/experiments/ENCSR228OQM/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-CLOCK ChIP-seq on human K562
experiment encode accession: ENCSR228OQM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR493HMV
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB666AYK
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: adult

value: ENCBS636TYU at ENCODE; https://www.encodeproject.org/ENCBS636TYU/


title: TF ChIP-seq from HepG2 (ENCLB230EQU)

description:
https://www.encodeproject.org/experiments/ENCSR076SHT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR076SHT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB230EQU
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting GPN1

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS688ORV at ENCODE; https://www.encodeproject.org/ENCBS688ORV/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB775NCH)

description:
https://www.encodeproject.org/experiments/ENCSR479RZV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR479RZV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB775NCH
fragmentation methods: sonication (generic)

value: CBFB

value: ENCBS360TXN at ENCODE; https://www.encodeproject.org/ENCBS360TXN/


title: DNase-seq from posterior cingulate gyrus (ENCLB206STA)

description:
https://www.encodeproject.org/experiments/ENCSR729TYE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR729TYE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB206STA

source_name: Homo sapiens female adult (90 or above years) posterior cingulate gyrus tissue

value: posterior cingulate gyrus

value: tissue

value: female

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS820JNT at ENCODE; https://www.encodeproject.org/ENCBS820JNT/

value: Derived from ENCODE donor ENCDO242JQO; https://www.encodeproject.org/ENCDO242JQO/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB489SAP)

description:
https://www.encodeproject.org/experiments/ENCSR419KXU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR419KXU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB489SAP

source_name: Homo sapiens female adult (90 or above years) dorsolateral prefrontal cortex tissue with Alzheimer's disease

value: dorsolateral prefrontal cortex

value: adult

value: ENCBS917DCE at ENCODE; https://www.encodeproject.org/ENCBS917DCE/

value: Derived from ENCODE donor ENCDO847KYQ; https://www.encodeproject.org/ENCDO847KYQ/


title: DNase-seq from T-cell (ENCLB218LVF)

description:
https://www.encodeproject.org/experiments/ENCSR419OAR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR419OAR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB218LVF

source_name: Homo sapiens male adult (24 years) T-cell primary cell

value: T-cell

value: primary cell

value: male

value: 24 year

value: AllCells

value: ENCBS341KNF at ENCODE; https://www.encodeproject.org/ENCBS341KNF/

value: Derived from ENCODE donor ENCDO786GVO; https://www.encodeproject.org/ENCDO786GVO/


title: TF ChIP-seq from HepG2 (ENCLB514GRK)

description:
https://www.encodeproject.org/experiments/ENCSR800JRG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR800JRG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB514GRK
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting TEAD4

value: cell line

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS205JXV at ENCODE; https://www.encodeproject.org/ENCBS205JXV/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB587XMT)

description:
https://www.encodeproject.org/experiments/ENCSR076SHT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR076SHT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB587XMT
fragmentation methods: sonication (generic)

value: ENCBS440SDY at ENCODE; https://www.encodeproject.org/ENCBS440SDY/


title: TF ChIP-seq from HepG2 (ENCLB975PWO)

description:
https://www.encodeproject.org/experiments/ENCSR469GZL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR469GZL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB975PWO
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting LCOR

value: LCOR

value: ENCBS619BSO at ENCODE; https://www.encodeproject.org/ENCBS619BSO/


title: DNase-seq from CD8-positive, alpha-beta memory T cell (ENCLB386OCB)

description:
https://www.encodeproject.org/experiments/ENCSR025BWH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR025BWH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB386OCB

source_name: Homo sapiens male adult (24 years) CD8-positive, alpha-beta memory T primary cell

value: CD8-positive, alpha-beta memory T cell

value: primary cell

value: adult

value: John Stamatoyannopoulos, UW

value: ENCBS996IUB at ENCODE; https://www.encodeproject.org/ENCBS996IUB/


title: TF ChIP-seq from HepG2 (ENCLB600PYH)

description:
https://www.encodeproject.org/experiments/ENCSR469GZL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR469GZL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB600PYH
fragmentation methods: sonication (generic)

value: male

value: ENCBS383VAF at ENCODE; https://www.encodeproject.org/ENCBS383VAF/


title: TF ChIP-seq from HepG2 (ENCLB256DGA)

description:
https://www.encodeproject.org/experiments/ENCSR800JRG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR800JRG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB256DGA
fragmentation methods: sonication (generic)

value: cell line

value: hepatocellular carcinoma

value: ENCBS720HJK at ENCODE; https://www.encodeproject.org/ENCBS720HJK/


title: DNase-seq from head of caudate nucleus (ENCLB005TRK)

description:
https://www.encodeproject.org/experiments/ENCSR024BXN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR024BXN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB005TRK

source_name: Homo sapiens female adult (82 years) head of caudate nucleus tissue

value: head of caudate nucleus

value: tissue

value: female

value: 82 year

value: Rush University

value: ENCBS256XCL at ENCODE; https://www.encodeproject.org/ENCBS256XCL/

value: Derived from ENCODE donor ENCDO377QXX; https://www.encodeproject.org/ENCDO377QXX/


title: TF ChIP-seq from K562 (ENCLB767YGH)

description:
https://www.encodeproject.org/experiments/ENCSR023OOE/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF764 ChIP-seq on human K562
experiment encode accession: ENCSR023OOE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR343BAV
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB767YGH
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF764

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS673GRR at ENCODE; https://www.encodeproject.org/ENCBS673GRR/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB277FJK)

description:
https://www.encodeproject.org/experiments/ENCSR469FBY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR469FBY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB277FJK
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting HNF4A

value: male

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS410WOO at ENCODE; https://www.encodeproject.org/ENCBS410WOO/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from left lung (ENCLB999OYS)

description:
https://www.encodeproject.org/experiments/ENCSR723VNG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR723VNG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB999OYS

source_name: Homo sapiens male adult (40 years) left lung tissue, preserved by flash-freezing

value: left lung

value: tissue

value: DM:no; HTN:yes; CAD:no

value: adult

value: 40 year

value: Yiing Lin, MD, PhD

value: ENCBS669PIG at ENCODE; https://www.encodeproject.org/ENCBS669PIG/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: TF ChIP-seq from HepG2 (ENCLB245NOR)

description:
https://www.encodeproject.org/experiments/ENCSR799FCZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR799FCZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB245NOR
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting CREM

value: CREM

value: cell line

value: hepatocellular carcinoma

value: ENCBS371LAH at ENCODE; https://www.encodeproject.org/ENCBS371LAH/


title: TF ChIP-seq from HepG2 (ENCLB021CDT)

description:
https://www.encodeproject.org/experiments/ENCSR469FBY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR469FBY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB021CDT
fragmentation methods: sonication (generic)

value: male

value: child

value: 15 year

value: ENCBS333TBM at ENCODE; https://www.encodeproject.org/ENCBS333TBM/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB442TML)

description:
https://www.encodeproject.org/experiments/ENCSR022UVL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR022UVL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB442TML

source_name: Homo sapiens female adult (90 or above years) dorsolateral prefrontal cortex tissue with mild cognitive impairment

value: dorsolateral prefrontal cortex

value: female

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS958JYO at ENCODE; https://www.encodeproject.org/ENCBS958JYO/

value: Derived from ENCODE donor ENCDO471EKG; https://www.encodeproject.org/ENCDO471EKG/


title: DNase-seq from head of caudate nucleus (ENCLB788FRO)

description:
https://www.encodeproject.org/experiments/ENCSR417LPB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR417LPB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB788FRO

source_name: Homo sapiens female adult (90 or above years) head of caudate nucleus tissue with Cognitive impairment

value: head of caudate nucleus

value: tissue

value: adult

value: ENCBS579UMQ at ENCODE; https://www.encodeproject.org/ENCBS579UMQ/

value: Derived from ENCODE donor ENCDO359XWR; https://www.encodeproject.org/ENCDO359XWR/


title: DNase-seq from head of caudate nucleus (ENCLB368TRK)

description:
https://www.encodeproject.org/experiments/ENCSR721DFB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR721DFB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB368TRK

source_name: Homo sapiens female adult (90 or above years) head of caudate nucleus tissue with mild cognitive impairment

value: ENCBS542QFE at ENCODE; https://www.encodeproject.org/ENCBS542QFE/

value: Derived from ENCODE donor ENCDO746DTM; https://www.encodeproject.org/ENCDO746DTM/


title: TF ChIP-seq from HepG2 (ENCLB416CDQ)

description:
https://www.encodeproject.org/experiments/ENCSR799FCZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR799FCZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB416CDQ
fragmentation methods: sonication (generic)

value: CREM

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS397IBZ at ENCODE; https://www.encodeproject.org/ENCBS397IBZ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB992NTL)

description:
https://www.encodeproject.org/experiments/ENCSR720FVJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR720FVJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB992NTL

value: dorsolateral prefrontal cortex

value: female

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS086EMA at ENCODE; https://www.encodeproject.org/ENCBS086EMA/

value: Derived from ENCODE donor ENCDO672KST; https://www.encodeproject.org/ENCDO672KST/


title: TF ChIP-seq from K562 (ENCLB480XKH)

description:
https://www.encodeproject.org/experiments/ENCSR017EJY/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-DLX4 ChIP-seq on human K562
experiment encode accession: ENCSR017EJY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR956YUD, ENCSR012KTG
encode release date: 2021-01-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB480XKH
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting DLX4

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: ATCC

value: ENCBS170TTX at ENCODE; https://www.encodeproject.org/ENCBS170TTX/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB492HWN)

description:
https://www.encodeproject.org/experiments/ENCSR272TOJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR272TOJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB492HWN
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting DLX6

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS582WPI at ENCODE; https://www.encodeproject.org/ENCBS582WPI/


title: TF ChIP-seq from HepG2 (ENCLB593OCD)

description:
https://www.encodeproject.org/experiments/ENCSR272TOJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR272TOJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB593OCD
fragmentation methods: sonication (generic)

value: ENCBS233FSH at ENCODE; https://www.encodeproject.org/ENCBS233FSH/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB550NJL)

description:
https://www.encodeproject.org/experiments/ENCSR271XMW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR271XMW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB550NJL
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting EP300

value: ENCBS752IFX at ENCODE; https://www.encodeproject.org/ENCBS752IFX/


title: TF ChIP-seq from K562 (ENCLB055IRP)

description:
https://www.encodeproject.org/experiments/ENCSR222TVA/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF785 ChIP-seq on human K562
experiment encode accession: ENCSR222TVA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR186SKI
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB055IRP
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF785

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: Kevin White

value: ENCBS954SBM at ENCODE; https://www.encodeproject.org/ENCBS954SBM/


title: DNase-seq from islet precursor cell (ENCLB178HHW)

description:
https://www.encodeproject.org/experiments/ENCSR224FOA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR224FOA
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2018-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB178HHW

source_name: Homo sapiens female embryo (5 days) islet precursor in vitro differentiated cells

value: islet precursor cell

value: in vitro differentiated cells

value: healthy

value: embryonic

value: 5 day

value: John Stamatoyannopoulos, UW

value: Stephen Dalton

value: ENCBS928AKR at ENCODE; https://www.encodeproject.org/ENCBS928AKR/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: DNase-seq from effector memory CD4-positive, alpha-beta T cell (ENCLB324LXK)

description:
https://www.encodeproject.org/experiments/ENCSR724INK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR724INK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB324LXK

source_name: Homo sapiens male adult (56 years) effector memory CD4-positive, alpha-beta T primary cell

value: primary cell

value: male

value: 56 year

value: AllCells

value: ENCBS583IRY at ENCODE; https://www.encodeproject.org/ENCBS583IRY/

value: Derived from ENCODE donor ENCDO100JZM; https://www.encodeproject.org/ENCDO100JZM/


title: TF ChIP-seq from HepG2 (ENCLB274ZUD)

description:
https://www.encodeproject.org/experiments/ENCSR069JKP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR069JKP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB274ZUD
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting TFDP2

value: cell line

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS640AMU at ENCODE; https://www.encodeproject.org/ENCBS640AMU/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from K562 (ENCLB794UQI)

description:
https://www.encodeproject.org/experiments/ENCSR023OOE/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF764 ChIP-seq on human K562
experiment encode accession: ENCSR023OOE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR343BAV
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB794UQI
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS016DSZ at ENCODE; https://www.encodeproject.org/ENCBS016DSZ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB557RTU)

description:
https://www.encodeproject.org/experiments/ENCSR271XMW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR271XMW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB557RTU
fragmentation methods: sonication (generic)

value: male

value: ENCBS198UMR at ENCODE; https://www.encodeproject.org/ENCBS198UMR/


title: TF ChIP-seq from HepG2 (ENCLB500RKH)

description:
https://www.encodeproject.org/experiments/ENCSR069JKP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR069JKP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB500RKH
fragmentation methods: sonication (generic)

value: cell line

value: hepatocellular carcinoma

value: ENCBS252QIX at ENCODE; https://www.encodeproject.org/ENCBS252QIX/


title: TF ChIP-seq from K562 (ENCLB170SQZ)

description:
https://www.encodeproject.org/experiments/ENCSR222TVA/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF785 ChIP-seq on human K562
experiment encode accession: ENCSR222TVA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR186SKI
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB170SQZ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: ENCBS225JRF at ENCODE; https://www.encodeproject.org/ENCBS225JRF/


title: TF ChIP-seq from HepG2 (ENCLB004JSH)

description:
https://www.encodeproject.org/experiments/ENCSR798KXG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR798KXG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB004JSH
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting TBP

value: TBP

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS154VFL at ENCODE; https://www.encodeproject.org/ENCBS154VFL/


title: DNase-seq from head of caudate nucleus (ENCLB092YVF)

description:
https://www.encodeproject.org/experiments/ENCSR717BBR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR717BBR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB092YVF

source_name: Homo sapiens male adult (90 or above years) head of caudate nucleus tissue with mild cognitive impairment

value: head of caudate nucleus

value: tissue

value: adult

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS024YFT at ENCODE; https://www.encodeproject.org/ENCBS024YFT/

value: Derived from ENCODE donor ENCDO283GDX; https://www.encodeproject.org/ENCDO283GDX/


title: DNase-seq from T-cell (ENCLB413HAZ)

description:
https://www.encodeproject.org/experiments/ENCSR715TMH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR715TMH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB413HAZ

source_name: Homo sapiens female adult (32 years) T-cell primary cell

value: T-cell

value: primary cell

value: female

value: 32 year

value: AllCells

value: ENCBS870OHL at ENCODE; https://www.encodeproject.org/ENCBS870OHL/

value: Derived from ENCODE donor ENCDO808WEZ; https://www.encodeproject.org/ENCDO808WEZ/


title: DNase-seq from head of caudate nucleus (ENCLB881VBM)

description:
https://www.encodeproject.org/experiments/ENCSR722HJG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR722HJG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB881VBM

source_name: Homo sapiens female adult (82 years) head of caudate nucleus tissue

value: 82 year

value: ENCBS749EKF at ENCODE; https://www.encodeproject.org/ENCBS749EKF/

value: Derived from ENCODE donor ENCDO165PNJ; https://www.encodeproject.org/ENCDO165PNJ/


title: TF ChIP-seq from HepG2 (ENCLB891QHA)

description:
https://www.encodeproject.org/experiments/ENCSR798KXG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR798KXG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB891QHA
fragmentation methods: sonication (generic)

value: TBP

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS147JRH at ENCODE; https://www.encodeproject.org/ENCBS147JRH/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB324ZLW)

description:
https://www.encodeproject.org/experiments/ENCSR068ZQR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR068ZQR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB324ZLW
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF777

value: ENCBS878LVI at ENCODE; https://www.encodeproject.org/ENCBS878LVI/


title: TF ChIP-seq from HepG2 (ENCLB165RPU)

description:
https://www.encodeproject.org/experiments/ENCSR068ZQR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR068ZQR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB165RPU
fragmentation methods: sonication (generic)

value: ENCBS701LHL at ENCODE; https://www.encodeproject.org/ENCBS701LHL/


title: TF ChIP-seq from HepG2 (ENCLB745RTF)

description:
https://www.encodeproject.org/experiments/ENCSR463DPV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR463DPV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB745RTF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting AFF4

value: ENCBS735KRZ at ENCODE; https://www.encodeproject.org/ENCBS735KRZ/


title: TF ChIP-seq from K562 (ENCLB676ZCS)

description:
https://www.encodeproject.org/experiments/ENCSR017EJY/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-DLX4 ChIP-seq on human K562
experiment encode accession: ENCSR017EJY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR956YUD, ENCSR012KTG
encode release date: 2021-01-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB676ZCS
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: ATCC

value: ENCBS843KEV at ENCODE; https://www.encodeproject.org/ENCBS843KEV/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB200OTV)

description:
https://www.encodeproject.org/experiments/ENCSR463DPV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR463DPV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB200OTV
fragmentation methods: sonication (generic)

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: ENCBS350YJF at ENCODE; https://www.encodeproject.org/ENCBS350YJF/


title: TF ChIP-seq from K562 (ENCLB979OHK)

description:
https://www.encodeproject.org/experiments/ENCSR712KVZ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF324 ChIP-seq on human K562
experiment encode accession: ENCSR712KVZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR865FVS, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB979OHK
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF324

value: Kevin White

value: ENCBS033CIS at ENCODE; https://www.encodeproject.org/ENCBS033CIS/


title: DNase-seq from left cardiac atrium (ENCLB226FNM)

description:
https://www.encodeproject.org/experiments/ENCSR412NMI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR412NMI
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-10-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB226FNM
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens female embryo (101 days) left cardiac atrium tissue

value: left cardiac atrium

value: tissue

value: embryonic

value: 101 day

value: John Stamatoyannopoulos, UW

value: BDRL

value: ENCBS982OCU at ENCODE; https://www.encodeproject.org/ENCBS982OCU/

value: Derived from ENCODE donor ENCDO060OTP; https://www.encodeproject.org/ENCDO060OTP/


title: DNase-seq from heart left ventricle (ENCLB161XDN)

description:
https://www.encodeproject.org/experiments/ENCSR222CLC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR222CLC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB161XDN

source_name: Homo sapiens male adult (69 years) heart left ventricle tissue

value: heart left ventricle

value: ischemic (EF 25% LVEDD 5.7; RV mildly dilated, moderate dysfunction)

value: adult

value: 69 year

value: Michael Snyder, Stanford

value: Shin Lin

value: ENCBS030BAP at ENCODE; https://www.encodeproject.org/ENCBS030BAP/

value: Derived from ENCODE donor ENCDO477WED; https://www.encodeproject.org/ENCDO477WED/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB220LME)

description:
https://www.encodeproject.org/experiments/ENCSR221ROM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR221ROM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB220LME

source_name: Homo sapiens female adult (90 or above years) dorsolateral prefrontal cortex tissue

value: dorsolateral prefrontal cortex

value: female

value: 90 year or above

value: Rush University

value: ENCBS072LNZ at ENCODE; https://www.encodeproject.org/ENCBS072LNZ/

value: Derived from ENCODE donor ENCDO101GPB; https://www.encodeproject.org/ENCDO101GPB/


title: TF ChIP-seq from HepG2 (ENCLB589HDD)

description:
https://www.encodeproject.org/experiments/ENCSR460YAM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR460YAM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB589HDD
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting SP1

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS136BPT at ENCODE; https://www.encodeproject.org/ENCBS136BPT/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB368BUC)

description:
https://www.encodeproject.org/experiments/ENCSR014GTH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR014GTH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB368BUC

source_name: Homo sapiens female adult (81 years) dorsolateral prefrontal cortex tissue with Alzheimer's disease

value: tissue

value: adult

value: 81 year

value: John Stamatoyannopoulos, UW

value: ENCBS394JCI at ENCODE; https://www.encodeproject.org/ENCBS394JCI/

value: Derived from ENCODE donor ENCDO097MEH; https://www.encodeproject.org/ENCDO097MEH/


title: DNase-seq from WERI-Rb-1 (ENCLB376JHC)

description:
https://www.encodeproject.org/experiments/ENCSR218FSP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR218FSP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB376JHC

source_name: Homo sapiens WERI-Rb-1 cell line

value: female

value: retinoblastoma

value: 1 year

value: ATCC

value: ENCBS826FLZ at ENCODE; https://www.encodeproject.org/ENCBS826FLZ/

value: Derived from ENCODE donor ENCDO000ADT; https://www.encodeproject.org/ENCDO000ADT/


title: TF ChIP-seq from HepG2 (ENCLB684DDQ)

description:
https://www.encodeproject.org/experiments/ENCSR460YAM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR460YAM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB684DDQ
fragmentation methods: sonication (generic)

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: ENCBS373YVH at ENCODE; https://www.encodeproject.org/ENCBS373YVH/


title: DNase-seq from WERI-Rb-1 (ENCLB736PVW)

description:
https://www.encodeproject.org/experiments/ENCSR218FSP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR218FSP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB736PVW

value: ENCBS000VYM at ENCODE; https://www.encodeproject.org/ENCBS000VYM/


title: DNase-seq from T-cell (ENCLB404JJN)

description:
https://www.encodeproject.org/experiments/ENCSR217PZP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR217PZP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB404JJN

source_name: Homo sapiens male adult (26 years) T-cell primary cell

value: T-cell

value: primary cell

value: adult

value: 26 year

value: AllCells

value: ENCBS368QGN at ENCODE; https://www.encodeproject.org/ENCBS368QGN/

value: Derived from ENCODE donor ENCDO769UME; https://www.encodeproject.org/ENCDO769UME/


title: TF ChIP-seq from HepG2 (ENCLB227UUN)

description:
https://www.encodeproject.org/experiments/ENCSR269DQN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR269DQN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB227UUN
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting MED13

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS757ERK at ENCODE; https://www.encodeproject.org/ENCBS757ERK/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from aorta (ENCLB544CMX)

description:
https://www.encodeproject.org/experiments/ENCSR713KNQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR713KNQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB544CMX

source_name: Homo sapiens female adult (41 years) aorta tissue, preserved by flash-freezing

value: aorta

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS923PBY at ENCODE; https://www.encodeproject.org/ENCBS923PBY/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: TF ChIP-seq from HepG2 (ENCLB661UCS)

description:
https://www.encodeproject.org/experiments/ENCSR269DQN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR269DQN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB661UCS
fragmentation methods: sonication (generic)

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: ENCBS410KJL at ENCODE; https://www.encodeproject.org/ENCBS410KJL/


title: DNase-seq from head of caudate nucleus (ENCLB273XAH)

description:
https://www.encodeproject.org/experiments/ENCSR217OHA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR217OHA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB273XAH

source_name: Homo sapiens female adult (90 or above years) head of caudate nucleus tissue

value: head of caudate nucleus

value: adult

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS689FQN at ENCODE; https://www.encodeproject.org/ENCBS689FQN/

value: Derived from ENCODE donor ENCDO006DAA; https://www.encodeproject.org/ENCDO006DAA/


title: DNase-seq from T-helper 17 cell (ENCLB343NNK)

description:
https://www.encodeproject.org/experiments/ENCSR709YRE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR709YRE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB343NNK

source_name: Homo sapiens male adult (42 years) T-helper 17 primary cell

value: T-helper 17 cell

value: primary cell

value: 42 year

value: AllCells

value: ENCBS431HSW at ENCODE; https://www.encodeproject.org/ENCBS431HSW/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: TF ChIP-seq from HepG2 (ENCLB471XJW)

description:
https://www.encodeproject.org/experiments/ENCSR306HAG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR306HAG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB471XJW
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting SNAPC4

value: cell line

value: male

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS971FRC at ENCODE; https://www.encodeproject.org/ENCBS971FRC/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from T-cell (ENCLB862VTS)

description:
https://www.encodeproject.org/experiments/ENCSR218FJD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR218FJD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB862VTS

source_name: Homo sapiens male adult (30 years) T-cell primary cell

value: T-cell

value: adult

value: 30 year

value: John Stamatoyannopoulos, UW

value: ENCBS316ZAU at ENCODE; https://www.encodeproject.org/ENCBS316ZAU/

value: Derived from ENCODE donor ENCDO091HDH; https://www.encodeproject.org/ENCDO091HDH/


title: TF ChIP-seq from HepG2 (ENCLB312IZU)

description:
https://www.encodeproject.org/experiments/ENCSR493VBX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR493VBX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB312IZU
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZSCAN31

value: child

value: 15 year

value: ENCBS509XJA at ENCODE; https://www.encodeproject.org/ENCBS509XJA/


title: DNase-seq from suprapubic skin (ENCLB462MCL)

description:
https://www.encodeproject.org/experiments/ENCSR709IYR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR709IYR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB462MCL

source_name: Homo sapiens male adult (54 years) suprapubic skin tissue

value: suprapubic skin

value: tissue

value: 54 year

value: Kristin Ardlie

value: ENCBS086AXQ at ENCODE; https://www.encodeproject.org/ENCBS086AXQ/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: DNase-seq from T-cell (ENCLB887STN)

description:
https://www.encodeproject.org/experiments/ENCSR410IYF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR410IYF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB887STN

source_name: Homo sapiens male adult (28 years) T-cell primary cell

value: primary cell

value: male

value: 28 year

value: AllCells

value: ENCBS112DIH at ENCODE; https://www.encodeproject.org/ENCBS112DIH/

value: Derived from ENCODE donor ENCDO249TXE; https://www.encodeproject.org/ENCDO249TXE/


title: TF ChIP-seq from HepG2 (ENCLB940WYP)

description:
https://www.encodeproject.org/experiments/ENCSR493VBX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR493VBX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB940WYP
fragmentation methods: sonication (generic)

value: cell line

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS918RFZ at ENCODE; https://www.encodeproject.org/ENCBS918RFZ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from K562 (ENCLB311VEC)

description:
https://www.encodeproject.org/experiments/ENCSR712KVZ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF324 ChIP-seq on human K562
experiment encode accession: ENCSR712KVZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR865FVS, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB311VEC
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF324

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS378SII at ENCODE; https://www.encodeproject.org/ENCBS378SII/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB668UPL)

description:
https://www.encodeproject.org/experiments/ENCSR304NTV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR304NTV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB668UPL
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting BCL3

value: male

value: child

value: 15 year

value: ENCBS067UBH at ENCODE; https://www.encodeproject.org/ENCBS067UBH/


title: TF ChIP-seq from HepG2 (ENCLB156RMF)

description:
https://www.encodeproject.org/experiments/ENCSR110BYN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR110BYN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR356LLA
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB156RMF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF33A

value: cell line

value: hepatocellular carcinoma

value: ENCBS115XAC at ENCODE; https://www.encodeproject.org/ENCBS115XAC/


title: DNase-seq from mucosa of gallbladder (ENCLB568WRI)

description:
https://www.encodeproject.org/experiments/ENCSR011SAG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR011SAG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB568WRI

source_name: Homo sapiens female child (16 years) mucosa of gallbladder tissue, preserved by flash-freezing

value: mucosa of gallbladder

value: tissue

value: DM:no; HTN:no; CAD:no

value: 16 year

value: Yiing Lin, MD, PhD

value: ENCBS969MVO at ENCODE; https://www.encodeproject.org/ENCBS969MVO/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: TF ChIP-seq from HepG2 (ENCLB539PXB)

description:
https://www.encodeproject.org/experiments/ENCSR048WVW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR048WVW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB539PXB
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF367

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS290CLM at ENCODE; https://www.encodeproject.org/ENCBS290CLM/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB345BUJ)

description:
https://www.encodeproject.org/experiments/ENCSR304NTV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR304NTV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB345BUJ
fragmentation methods: sonication (generic)

value: male

value: child

value: ENCBS164DKV at ENCODE; https://www.encodeproject.org/ENCBS164DKV/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB664VYP)

description:
https://www.encodeproject.org/experiments/ENCSR215DXT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR215DXT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB664VYP

source_name: Homo sapiens female adult (90 or above years) dorsolateral prefrontal cortex tissue with Cognitive impairment

value: dorsolateral prefrontal cortex

value: female

value: adult

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS185MJX at ENCODE; https://www.encodeproject.org/ENCBS185MJX/

value: Derived from ENCODE donor ENCDO359XWR; https://www.encodeproject.org/ENCDO359XWR/


title: TF ChIP-seq from HepG2 (ENCLB936URH)

description:
https://www.encodeproject.org/experiments/ENCSR269MEF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR269MEF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB936URH
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZBTB44

value: cell line

value: hepatocellular carcinoma

value: 15 year

value: ENCBS131YXO at ENCODE; https://www.encodeproject.org/ENCBS131YXO/


title: TF ChIP-seq from HepG2 (ENCLB364UOQ)

description:
https://www.encodeproject.org/experiments/ENCSR269MEF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR269MEF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB364UOQ
fragmentation methods: sonication (generic)

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS292TBE at ENCODE; https://www.encodeproject.org/ENCBS292TBE/


title: TF ChIP-seq from HepG2 (ENCLB121WVX)

description:
https://www.encodeproject.org/experiments/ENCSR048WVW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR048WVW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB121WVX
fragmentation methods: sonication (generic)

value: male

value: child

value: ENCBS553WBK at ENCODE; https://www.encodeproject.org/ENCBS553WBK/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB697CUY)

description:
https://www.encodeproject.org/experiments/ENCSR108MKR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR108MKR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615JHA
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB697CUY
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting MNX1

value: ENCBS648DWB at ENCODE; https://www.encodeproject.org/ENCBS648DWB/


title: TF ChIP-seq from GM23338 (ENCLB055ZMG)

description:
https://www.encodeproject.org/experiments/ENCSR214ZAV/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-CREB1 ChIP-seq on human GM23338
experiment encode accession: ENCSR214ZAV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR518DKF, ENCSR533JIB
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB055ZMG
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens GM23338 cell line genetically modified (insertion) using CRISPR targeting CREB1

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS883HUT at ENCODE; https://www.encodeproject.org/ENCBS883HUT/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: TF ChIP-seq from HepG2 (ENCLB795LUE)

description:
https://www.encodeproject.org/experiments/ENCSR843JCI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR843JCI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR257XAX
encode release date: 2021-02-25
lab: Richard Myers, HAIB
library encode accession: ENCLB795LUE
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZMAT3

value: cell line

value: hepatocellular carcinoma

value: ENCBS961UQF at ENCODE; https://www.encodeproject.org/ENCBS961UQF/


title: TF ChIP-seq from HepG2 (ENCLB287FAF)

description:
https://www.encodeproject.org/experiments/ENCSR046DIG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR046DIG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB287FAF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting DDIT3

value: 15 year

value: Richard Myers, HAIB

value: ENCBS461ZTS at ENCODE; https://www.encodeproject.org/ENCBS461ZTS/


title: TF ChIP-seq from K562 (ENCLB910BJD)

description:
https://www.encodeproject.org/experiments/ENCSR235PYI/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF41 ChIP-seq on human K562
experiment encode accession: ENCSR235PYI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR006OWT, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB910BJD
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF41

value: female

value: chronic myelogenous leukemia (CML)

value: Kevin White

value: ENCBS236MLX at ENCODE; https://www.encodeproject.org/ENCBS236MLX/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB865PUH)

description:
https://www.encodeproject.org/experiments/ENCSR843JCI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR843JCI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR257XAX
encode release date: 2021-02-25
lab: Richard Myers, HAIB
library encode accession: ENCLB865PUH
fragmentation methods: sonication (generic)

value: male

value: child

value: Richard Myers

value: ENCBS501MUO at ENCODE; https://www.encodeproject.org/ENCBS501MUO/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB877RKA)

description:
https://www.encodeproject.org/experiments/ENCSR306HAG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR306HAG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB877RKA
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting SNAPC4

value: ENCBS415UWI at ENCODE; https://www.encodeproject.org/ENCBS415UWI/


title: TF ChIP-seq from K562 (ENCLB279QFR)

description:
https://www.encodeproject.org/experiments/ENCSR405KTQ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-HEY1 ChIP-seq on human K562
experiment encode accession: ENCSR405KTQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR426BBS, ENCSR765BVG
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB279QFR
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting HEY1

value: cell line

value: adult

value: 53 year

value: Michael Snyder, Stanford

tag: passage number

value: ENCBS351CVB at ENCODE; https://www.encodeproject.org/ENCBS351CVB/


title: TF ChIP-seq from GM23338 (ENCLB231AIX)

description:
https://www.encodeproject.org/experiments/ENCSR214ZAV/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-CREB1 ChIP-seq on human GM23338
experiment encode accession: ENCSR214ZAV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR518DKF, ENCSR533JIB
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB231AIX
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: Michael Snyder

value: ENCBS299EEL at ENCODE; https://www.encodeproject.org/ENCBS299EEL/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: TF ChIP-seq from HepG2 (ENCLB966YNS)

description:
https://www.encodeproject.org/experiments/ENCSR110BYN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR110BYN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR356LLA
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB966YNS
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: 15 year

value: Richard Myers, HAIB

value: ENCBS294WPG at ENCODE; https://www.encodeproject.org/ENCBS294WPG/


title: TF ChIP-seq from HepG2 (ENCLB787YQG)

description:
https://www.encodeproject.org/experiments/ENCSR842SRB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR842SRB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB787YQG
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF350

value: male

value: child

value: ENCBS146TBH at ENCODE; https://www.encodeproject.org/ENCBS146TBH/


title: TF ChIP-seq from HepG2 (ENCLB312GTC)

description:
https://www.encodeproject.org/experiments/ENCSR839AJZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR839AJZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615JHA
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB312GTC
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF446

value: Richard Myers

value: ENCBS268LIL at ENCODE; https://www.encodeproject.org/ENCBS268LIL/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB812NGX)

description:
https://www.encodeproject.org/experiments/ENCSR046DIG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR046DIG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB812NGX
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS857JRA at ENCODE; https://www.encodeproject.org/ENCBS857JRA/


title: TF ChIP-seq from K562 (ENCLB534KFZ)

description:
https://www.encodeproject.org/experiments/ENCSR405KTQ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-HEY1 ChIP-seq on human K562
experiment encode accession: ENCSR405KTQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR426BBS, ENCSR765BVG
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB534KFZ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS982XJB at ENCODE; https://www.encodeproject.org/ENCBS982XJB/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB125IBZ)

description:
https://www.encodeproject.org/experiments/ENCSR258PSN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR258PSN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR080NUS
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB125IBZ
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF639

value: Richard Myers, HAIB

value: ENCBS213PFY at ENCODE; https://www.encodeproject.org/ENCBS213PFY/


title: TF ChIP-seq from HepG2 (ENCLB673VAU)

description:
https://www.encodeproject.org/experiments/ENCSR839AJZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR839AJZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615JHA
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB673VAU
fragmentation methods: sonication (generic)

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: ENCBS902NIQ at ENCODE; https://www.encodeproject.org/ENCBS902NIQ/


title: TF ChIP-seq from K562 (ENCLB424WMB)

description:
https://www.encodeproject.org/experiments/ENCSR258PSN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR258PSN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR080NUS
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB424WMB
fragmentation methods: sonication (generic)

value: cell line

value: Richard Myers

value: ENCBS594AAW at ENCODE; https://www.encodeproject.org/ENCBS594AAW/


title: ATAC-seq from HepG2 (ENCLB524DHQ)

description:
https://www.encodeproject.org/experiments/ENCSR291GJU/
***************
biological replicate number: 3
technical replicate number: 1
description: ATAC-seq on human cell line HepG2
experiment encode accession: ENCSR291GJU
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB524DHQ
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens HepG2 cell line

value: ATCC

value: ENCBS827CSM at ENCODE; https://www.encodeproject.org/ENCBS827CSM/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from BE2C (ENCLB010BYC)

description:
https://www.encodeproject.org/experiments/ENCSR009KWQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR009KWQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB010BYC

source_name: Homo sapiens BE2C cell line

value: unknown

value: 2 year

value: John Stamatoyannopoulos, UW

value: ENCBS538FCD at ENCODE; https://www.encodeproject.org/ENCBS538FCD/

value: Derived from ENCODE donor ENCDO000ACQ; https://www.encodeproject.org/ENCDO000ACQ/


title: ATAC-seq from HepG2 (ENCLB750JRI)

description:
https://www.encodeproject.org/experiments/ENCSR291GJU/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line HepG2
experiment encode accession: ENCSR291GJU
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB750JRI
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: Michael Snyder, Stanford

value: ENCBS710QMG at ENCODE; https://www.encodeproject.org/ENCBS710QMG/


title: DNase-seq from body of pancreas (ENCLB374DKK)

description:
https://www.encodeproject.org/experiments/ENCSR405YLV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR405YLV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB374DKK

source_name: Homo sapiens female adult (51 years) body of pancreas tissue

value: body of pancreas

value: tissue

value: female

value: adult

value: 51 year

value: Kristin Ardlie

value: ENCBS230UHS at ENCODE; https://www.encodeproject.org/ENCBS230UHS/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: DNase-seq from BE2C (ENCLB943AFH)

description:
https://www.encodeproject.org/experiments/ENCSR009KWQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR009KWQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB943AFH

value: cell line

value: male

value: child

value: ATCC

value: ENCBS806GZL at ENCODE; https://www.encodeproject.org/ENCBS806GZL/


title: DNase-seq from heart right ventricle (ENCLB200XIT)

description:
https://www.encodeproject.org/experiments/ENCSR214NLQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR214NLQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB200XIT

source_name: Homo sapiens male adult (69 years) heart right ventricle tissue

value: heart right ventricle

value: ischemic (EF 25% LVEDD 5.7; RV mildly dilated, moderate dysfunction)

value: 69 year

value: Shin Lin

value: ENCBS424DYU at ENCODE; https://www.encodeproject.org/ENCBS424DYU/

value: Derived from ENCODE donor ENCDO477WED; https://www.encodeproject.org/ENCDO477WED/


title: TF ChIP-seq from HepG2 (ENCLB331GZR)

description:
https://www.encodeproject.org/experiments/ENCSR108MKR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR108MKR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615JHA
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB331GZR
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS956RPX at ENCODE; https://www.encodeproject.org/ENCBS956RPX/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB936YHA)

description:
https://www.encodeproject.org/experiments/ENCSR832PID/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR832PID
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB936YHA
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF318

value: cell line

value: ENCBS905BOZ at ENCODE; https://www.encodeproject.org/ENCBS905BOZ/


title: DNase-seq from CD8-positive, alpha-beta memory T cell (ENCLB329UIV)

description:
https://www.encodeproject.org/experiments/ENCSR705GCU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR705GCU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB329UIV

source_name: Homo sapiens male adult (30 years) CD8-positive, alpha-beta memory T primary cell

value: CD8-positive, alpha-beta memory T cell

value: primary cell

value: male

value: adult

value: 30 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS597CPZ at ENCODE; https://www.encodeproject.org/ENCBS597CPZ/

value: Derived from ENCODE donor ENCDO166AGR; https://www.encodeproject.org/ENCDO166AGR/


title: TF ChIP-seq from HepG2 (ENCLB948INX)

description:
https://www.encodeproject.org/experiments/ENCSR832PID/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR832PID
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB948INX
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: child

value: ENCBS205DZM at ENCODE; https://www.encodeproject.org/ENCBS205DZM/


title: TF ChIP-seq from HepG2 (ENCLB736UEG)

description:
https://www.encodeproject.org/experiments/ENCSR769CWW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR769CWW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB736UEG
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ATF6

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS112UMG at ENCODE; https://www.encodeproject.org/ENCBS112UMG/


title: TF ChIP-seq from HepG2 (ENCLB355OIQ)

description:
https://www.encodeproject.org/experiments/ENCSR769CWW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR769CWW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB355OIQ
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS457OKW at ENCODE; https://www.encodeproject.org/ENCBS457OKW/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB618WIM)

description:
https://www.encodeproject.org/experiments/ENCSR842SRB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR842SRB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB618WIM
fragmentation methods: sonication (generic)

value: male

value: ENCBS399ASS at ENCODE; https://www.encodeproject.org/ENCBS399ASS/


title: TF ChIP-seq from HepG2 (ENCLB326SZR)

description:
https://www.encodeproject.org/experiments/ENCSR830FJY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR830FJY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB326SZR
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting SOX18

value: ENCBS034TIF at ENCODE; https://www.encodeproject.org/ENCBS034TIF/


title: DNase-seq from mucosa of descending colon (ENCLB014WNF)

description:
https://www.encodeproject.org/experiments/ENCSR404TSP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR404TSP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB014WNF

source_name: Homo sapiens female adult (61 years) mucosa of descending colon tissue, preserved by flash-freezing

value: mucosa of descending colon

value: tissue

value: female

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: adult

value: 61 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS544GDO at ENCODE; https://www.encodeproject.org/ENCBS544GDO/

value: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/


title: TF ChIP-seq from HepG2 (ENCLB835YYF)

description:
https://www.encodeproject.org/experiments/ENCSR767HDQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR767HDQ
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB835YYF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting CERS6

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS782ZMT at ENCODE; https://www.encodeproject.org/ENCBS782ZMT/


title: DNase-seq from posterior cingulate gyrus (ENCLB237CPK)

description:
https://www.encodeproject.org/experiments/ENCSR006XFA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR006XFA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB237CPK

source_name: Homo sapiens female adult (82 years) posterior cingulate gyrus tissue

value: posterior cingulate gyrus

value: 82 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS237ZMC at ENCODE; https://www.encodeproject.org/ENCBS237ZMC/

value: Derived from ENCODE donor ENCDO165PNJ; https://www.encodeproject.org/ENCDO165PNJ/


title: ATAC-seq from GM23338 (ENCLB317QGI)

description:
https://www.encodeproject.org/experiments/ENCSR485TLP/
***************
biological replicate number: 3
technical replicate number: 1
description: ATAC-seq on human cell line PGP1
experiment encode accession: ENCSR485TLP
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB317QGI
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens GM23338 cell line

value: cell line

value: male

value: adult

value: 53 year

value: George Church

value: ENCBS994YIB at ENCODE; https://www.encodeproject.org/ENCBS994YIB/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/