title: DNase-seq from pancreas (ENCLB304UOA)

description:
https://www.encodeproject.org/experiments/ENCSR056PFI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR056PFI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB304UOA

source_name: Homo sapiens male adult (26 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: tissue

value: DM:no; HTN:no; CAD:no

value: 26 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS028WAL at ENCODE; https://www.encodeproject.org/ENCBS028WAL/

value: Derived from ENCODE donor ENCDO221IPH; https://www.encodeproject.org/ENCDO221IPH/


title: DNase-seq from breast epithelium (ENCLB105ITW)

status: Public on Mar 29 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR788IZL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR788IZL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB105ITW

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens male adult (54 years) breast epithelium tissue

value: breast epithelium

tag: biosample encode accession

tag: Sex

value: male

tag: dev stage

value: adult

tag: age

value: 54 year

tag: lab

value: John Stamatoyannopoulos, UW

tag: source

value: Kristin Ardlie

tag: link

value: ENCBS989ZTS at ENCODE; https://www.encodeproject.org/ENCBS989ZTS/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: DNase-seq from placenta (ENCLB091SOF)

description:
https://www.encodeproject.org/experiments/ENCSR267UFM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR267UFM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB091SOF

source_name: Homo sapiens embryo placenta tissue

value: placenta

value: not collected

value: embryonic

value: unknown

value: John Stamatoyannopoulos

value: ENCBS476VDM at ENCODE; https://www.encodeproject.org/ENCBS476VDM/

value: Derived from ENCODE donor ENCDO131RJA; https://www.encodeproject.org/ENCDO131RJA/


title: DNase-seq from Peyer's patch (ENCLB282PIW)

description:
https://www.encodeproject.org/experiments/ENCSR455GUW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR455GUW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB282PIW

source_name: Homo sapiens male adult (54 years) Peyer's patch tissue

value: Peyer's patch

value: tissue

value: ENCBS636QSY at ENCODE; https://www.encodeproject.org/ENCBS636QSY/


title: DNase-seq from T-cell (ENCLB940TIP)

description:
https://www.encodeproject.org/experiments/ENCSR788SKJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR788SKJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB940TIP

source_name: Homo sapiens male adult (37 years) T-cell primary cell

value: T-cell

value: primary cell

value: male

value: 37 year

value: AllCells

value: ENCBS446LPX at ENCODE; https://www.encodeproject.org/ENCBS446LPX/

value: Derived from ENCODE donor ENCDO147QAL; https://www.encodeproject.org/ENCDO147QAL/


title: DNase-seq from CD4-positive naive resting alpha-beta T cell (ENCLB502YSE)

description:
https://www.encodeproject.org/experiments/ENCSR787ERP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR787ERP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB502YSE

source_name: Homo sapiens female adult (25 years) CD4-positive naive resting alpha-beta T primary cell

value: female

value: adult

value: 25 year

value: John Stamatoyannopoulos, UW

value: ENCBS782SQQ at ENCODE; https://www.encodeproject.org/ENCBS782SQQ/

value: Derived from ENCODE donor ENCDO011KGM; https://www.encodeproject.org/ENCDO011KGM/


title: DNase-seq from T-cell (ENCLB165KSX)

description:
https://www.encodeproject.org/experiments/ENCSR784RMA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR784RMA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB165KSX

source_name: Homo sapiens male adult (36 years) T-cell primary cell

value: 36 year

value: ENCBS089SAY at ENCODE; https://www.encodeproject.org/ENCBS089SAY/

value: Derived from ENCODE donor ENCDO462FPT; https://www.encodeproject.org/ENCDO462FPT/


title: DNase-seq from T-cell (ENCLB476QNJ)

description:
https://www.encodeproject.org/experiments/ENCSR785RIM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR785RIM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB476QNJ

source_name: Homo sapiens male adult (49 years) T-cell primary cell

value: 49 year

value: ENCBS175KPP at ENCODE; https://www.encodeproject.org/ENCBS175KPP/

value: Derived from ENCODE donor ENCDO668ZVJ; https://www.encodeproject.org/ENCDO668ZVJ/


title: TF ChIP-seq from K562 (ENCLB187MXI)

description:
https://www.encodeproject.org/experiments/ENCSR054JMQ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-REST ChIP-seq on human K562
experiment encode accession: ENCSR054JMQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR578HPA, ENCSR328FYU
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB187MXI
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting REST

tag: antibody

value: REST

tag: line

value: cell line

tag: description

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to REST.

tag: health state

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS942UCF at ENCODE; https://www.encodeproject.org/ENCBS942UCF/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB874NLL)

description:
https://www.encodeproject.org/experiments/ENCSR785MXI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR785MXI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB874NLL

source_name: Homo sapiens female adult (88 years) dorsolateral prefrontal cortex tissue with mild cognitive impairment

value: dorsolateral prefrontal cortex

value: tissue

value: female

value: adult

value: 88 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS384HTH at ENCODE; https://www.encodeproject.org/ENCBS384HTH/

value: Derived from ENCODE donor ENCDO151OJB; https://www.encodeproject.org/ENCDO151OJB/


title: DNase-seq from lower lobe of right lung (ENCLB878FRC)

description:
https://www.encodeproject.org/experiments/ENCSR785JXR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR785JXR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB878FRC

source_name: Homo sapiens male adult (60 years) lower lobe of right lung tissue, preserved by flash-freezing

value: lower lobe of right lung

value: male

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: 60 year

value: Yiing Lin, MD, PhD

value: ENCBS208WQR at ENCODE; https://www.encodeproject.org/ENCBS208WQR/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: DNase-seq from thyroid gland (ENCLB117ECH)

description:
https://www.encodeproject.org/experiments/ENCSR450PWF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR450PWF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB117ECH

source_name: Homo sapiens female adult (51 years) thyroid gland tissue

value: thyroid gland

value: 51 year

value: Kristin Ardlie

value: ENCBS705PGO at ENCODE; https://www.encodeproject.org/ENCBS705PGO/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: TF ChIP-seq from K562 (ENCLB656CHJ)

description:
https://www.encodeproject.org/experiments/ENCSR264LYE/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ESRRB ChIP-seq on human K562
experiment encode accession: ENCSR264LYE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR712UUA, ENCSR426BBS
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB656CHJ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ESRRB

value: ESRRB

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: ATCC

tag: passage number

value: ENCBS876YUX at ENCODE; https://www.encodeproject.org/ENCBS876YUX/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB039JEI)

description:
https://www.encodeproject.org/experiments/ENCSR264LYE/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ESRRB ChIP-seq on human K562
experiment encode accession: ENCSR264LYE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR712UUA, ENCSR426BBS
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB039JEI
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: ENCBS287QBU at ENCODE; https://www.encodeproject.org/ENCBS287QBU/


title: DNase-seq from adrenal gland (ENCLB941SGR)

description:
https://www.encodeproject.org/experiments/ENCSR053ZKP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR053ZKP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB941SGR

source_name: Homo sapiens female adult (53 years) adrenal gland tissue

value: adrenal gland

value: tissue

value: John Stamatoyannopoulos, UW

value: ENCBS213NZW at ENCODE; https://www.encodeproject.org/ENCBS213NZW/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: TF ChIP-seq from K562 (ENCLB811VFS)

description:
https://www.encodeproject.org/experiments/ENCSR054JMQ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-REST ChIP-seq on human K562
experiment encode accession: ENCSR054JMQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR578HPA, ENCSR328FYU
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB811VFS
size range: 450-650

value: REST

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to REST.

value: Kevin White

value: ENCBS877MXZ at ENCODE; https://www.encodeproject.org/ENCBS877MXZ/


title: DNase-seq from Peyer's patch (ENCLB966QEO)

description:
https://www.encodeproject.org/experiments/ENCSR261RWJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR261RWJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB966QEO

source_name: Homo sapiens female adult (51 years) Peyer's patch tissue

value: Peyer's patch

value: female

value: 51 year

value: Kristin Ardlie

value: ENCBS095FVN at ENCODE; https://www.encodeproject.org/ENCBS095FVN/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: TF ChIP-seq from K562 (ENCLB959HGT)

description:
https://www.encodeproject.org/experiments/ENCSR783EPA/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-TBPL1 ChIP-seq on human K562
experiment encode accession: ENCSR783EPA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR316UUM, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB959HGT
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting TBPL1

value: cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to TBPL1.

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: ENCBS348YOL at ENCODE; https://www.encodeproject.org/ENCBS348YOL/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from T-helper 1 cell (ENCLB248RPP)

description:
https://www.encodeproject.org/experiments/ENCSR260UJJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR260UJJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB248RPP

source_name: Homo sapiens male adult (42 years) T-helper 1 primary cell

value: T-helper 1 cell

value: primary cell

value: male

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS734TEK at ENCODE; https://www.encodeproject.org/ENCBS734TEK/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: TF ChIP-seq from K562 (ENCLB757HDV)

description:
https://www.encodeproject.org/experiments/ENCSR775EQV/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF583 ChIP-seq on human K562
experiment encode accession: ENCSR775EQV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR193NPW, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB757HDV
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF583

value: female

value: Kevin White

value: ENCBS839DHP at ENCODE; https://www.encodeproject.org/ENCBS839DHP/


title: DNase-seq from adrenal gland (ENCLB364DZF)

description:
https://www.encodeproject.org/experiments/ENCSR259GYP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR259GYP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB364DZF

source_name: Homo sapiens adrenal gland tissue female adult (51 year)

value: adrenal gland

value: tissue

value: 51 year

value: ENCBS548ULT at ENCODE; https://www.encodeproject.org/ENCBS548ULT/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: TF ChIP-seq from K562 (ENCLB986VYO)

description:
https://www.encodeproject.org/experiments/ENCSR783EPA/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-TBPL1 ChIP-seq on human K562
experiment encode accession: ENCSR783EPA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR316UUM, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB986VYO
size range: 450-650

value: cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to TBPL1.

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: ENCBS290QFU at ENCODE; https://www.encodeproject.org/ENCBS290QFU/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from right hindlimb (ENCLB086WVI)

description:
https://www.encodeproject.org/experiments/ENCSR449HOQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR449HOQ
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2018-01-29
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB086WVI
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens male embryo (81 days) right hindlimb tissue

value: right hindlimb

value: right leg

value: male

value: embryonic

value: 81 day

value: John Stamatoyannopoulos, UW

value: BDRL

value: ENCBS161DMX at ENCODE; https://www.encodeproject.org/ENCBS161DMX/

value: Derived from ENCODE donor ENCDO184UZW; https://www.encodeproject.org/ENCDO184UZW/


title: DNase-seq from posterior cingulate gyrus (ENCLB863UWP)

description:
https://www.encodeproject.org/experiments/ENCSR258POP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR258POP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB863UWP

source_name: Homo sapiens female adult (90 or above years) posterior cingulate gyrus tissue with mild cognitive impairment

value: posterior cingulate gyrus

value: tissue

value: female

value: 90 year or above

value: Rush University

value: ENCBS314ZIV at ENCODE; https://www.encodeproject.org/ENCBS314ZIV/

value: Derived from ENCODE donor ENCDO471EKG; https://www.encodeproject.org/ENCDO471EKG/


title: TF ChIP-seq from K562 (ENCLB827ETB)

description:
https://www.encodeproject.org/experiments/ENCSR775EQV/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF583 ChIP-seq on human K562
experiment encode accession: ENCSR775EQV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR193NPW, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB827ETB
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS203UKF at ENCODE; https://www.encodeproject.org/ENCBS203UKF/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB623KKE)

description:
https://www.encodeproject.org/experiments/ENCSR257AFV/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF76 ChIP-seq on human K562
experiment encode accession: ENCSR257AFV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR116EAU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB623KKE
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF76

value: ENCBS149UAM at ENCODE; https://www.encodeproject.org/ENCBS149UAM/


title: TF ChIP-seq from A549 (ENCLB277FSR)

description:
https://www.encodeproject.org/experiments/ENCSR448TVS/
***************
biological replicate number: 1
technical replicate number: 1
description: A549 immortalized cell line stably expressing C-terminal eGFP-FOSL2 fusion protein.
experiment encode accession: ENCSR448TVS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR002ABL, ENCSR650VIH
encode release date: 2020-07-16
lab: Michael Snyder, Stanford
library encode accession: ENCLB277FSR
size range: 450-650

source_name: Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting FOSL2

value: A549 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to FOSL2.

value: male

value: 58 year

value: Michael Snyder

value: ENCBS933LEB at ENCODE; https://www.encodeproject.org/ENCBS933LEB/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from A549 (ENCLB858IEP)

description:
https://www.encodeproject.org/experiments/ENCSR448TVS/
***************
biological replicate number: 2
technical replicate number: 1
description: A549 immortalized cell line stably expressing C-terminal eGFP-FOSL2 fusion protein.
experiment encode accession: ENCSR448TVS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR002ABL, ENCSR650VIH
encode release date: 2020-07-16
lab: Michael Snyder, Stanford
library encode accession: ENCLB858IEP
size range: 450-650

value: ENCBS168YHP at ENCODE; https://www.encodeproject.org/ENCBS168YHP/


title: DNase-seq from left ventricle myocardium inferior (ENCLB467MTN)

description:
https://www.encodeproject.org/experiments/ENCSR770OTB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR770OTB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB467MTN

source_name: Homo sapiens male adult (60 years) left ventricle myocardium inferior tissue, preserved by flash-freezing

value: left ventricle myocardium inferior

value: tissue

value: Inferior wall of left ventricle.

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: 60 year

value: Yiing Lin, MD, PhD

value: ENCBS883RIN at ENCODE; https://www.encodeproject.org/ENCBS883RIN/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: TF ChIP-seq from K562 (ENCLB425FBC)

description:
https://www.encodeproject.org/experiments/ENCSR044IXA/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF354B ChIP-seq on human K562
experiment encode accession: ENCSR044IXA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR257URH
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB425FBC
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF354B

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS522UMB at ENCODE; https://www.encodeproject.org/ENCBS522UMB/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB335IZS)

description:
https://www.encodeproject.org/experiments/ENCSR257AFV/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF76 ChIP-seq on human K562
experiment encode accession: ENCSR257AFV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR116EAU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB335IZS
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: ENCBS829ZZK at ENCODE; https://www.encodeproject.org/ENCBS829ZZK/


title: DNase-seq from posterior cingulate gyrus (ENCLB364YAD)

description:
https://www.encodeproject.org/experiments/ENCSR770JCP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR770JCP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB364YAD

source_name: Homo sapiens female adult (75 years) posterior cingulate gyrus tissue

value: posterior cingulate gyrus

value: tissue

value: 75 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS311SUX at ENCODE; https://www.encodeproject.org/ENCBS311SUX/

value: Derived from ENCODE donor ENCDO989QRD; https://www.encodeproject.org/ENCDO989QRD/


title: DNase-seq from T-cell (ENCLB569NZA)

description:
https://www.encodeproject.org/experiments/ENCSR051CYH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR051CYH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB569NZA

source_name: Homo sapiens male adult (42 years) T-cell primary cell

value: T-cell

value: primary cell

value: male

value: 42 year

value: AllCells

value: ENCBS079CNL at ENCODE; https://www.encodeproject.org/ENCBS079CNL/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: DNase-seq from head of caudate nucleus (ENCLB162VWX)

description:
https://www.encodeproject.org/experiments/ENCSR775KLH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR775KLH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB162VWX

source_name: Homo sapiens male adult (87 years) head of caudate nucleus tissue with Alzheimer's disease

value: head of caudate nucleus

value: adult

value: 87 year

value: ENCBS792AHJ at ENCODE; https://www.encodeproject.org/ENCBS792AHJ/

value: Derived from ENCODE donor ENCDO368JFY; https://www.encodeproject.org/ENCDO368JFY/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB867BLZ)

description:
https://www.encodeproject.org/experiments/ENCSR769OIG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR769OIG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB867BLZ

source_name: Homo sapiens male adult (38 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: 38 year

value: ENCBS965GYG at ENCODE; https://www.encodeproject.org/ENCBS965GYG/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: TF ChIP-seq from MCF-7 (ENCLB438UWO)

description:
https://www.encodeproject.org/experiments/ENCSR042GSX/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-SPDEF ChIP-seq on human MCF-7
experiment encode accession: ENCSR042GSX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR734XLI, ENCSR293ITU
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB438UWO
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens MCF-7 cell line genetically modified (insertion) using CRISPR targeting SPDEF

value: SPDEF

value: cell line

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS939KMT at ENCODE; https://www.encodeproject.org/ENCBS939KMT/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: TF ChIP-seq from MCF-7 (ENCLB466MVI)

description:
https://www.encodeproject.org/experiments/ENCSR042GSX/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-SPDEF ChIP-seq on human MCF-7
experiment encode accession: ENCSR042GSX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR734XLI, ENCSR293ITU
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB466MVI
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: adult

value: ENCBS397IRN at ENCODE; https://www.encodeproject.org/ENCBS397IRN/


title: TF ChIP-seq from A549 (ENCLB462FRI)

description:
https://www.encodeproject.org/experiments/ENCSR445FHB/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-FOXF2 ChIP-seq on human A549
experiment encode accession: ENCSR445FHB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR928HJI, ENCSR267NPO
encode release date: 2020-07-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB462FRI
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting FOXF2

value: male

value: 58 year

value: ENCBS952BHI at ENCODE; https://www.encodeproject.org/ENCBS952BHI/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: DNase-seq from MG63 (ENCLB336BLF)

description:
https://www.encodeproject.org/experiments/ENCSR443YJP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR443YJP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB336BLF

source_name: Homo sapiens MG63 cell line

value: osteosarcoma

value: child

value: 14 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS715KPQ at ENCODE; https://www.encodeproject.org/ENCBS715KPQ/

value: Derived from ENCODE donor ENCDO987OSE; https://www.encodeproject.org/ENCDO987OSE/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB794LSX)

description:
https://www.encodeproject.org/experiments/ENCSR254BCA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR254BCA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB794LSX

source_name: Homo sapiens female adult (33 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: primary cell

value: female

value: 33 year

value: AllCells

value: ENCBS647AVR at ENCODE; https://www.encodeproject.org/ENCBS647AVR/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: TF ChIP-seq from A549 (ENCLB691UMJ)

description:
https://www.encodeproject.org/experiments/ENCSR445FHB/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-FOXF2 ChIP-seq on human A549
experiment encode accession: ENCSR445FHB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR928HJI, ENCSR267NPO
encode release date: 2020-07-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB691UMJ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: male

value: adult

value: 58 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS681EHU at ENCODE; https://www.encodeproject.org/ENCBS681EHU/


title: DNase-seq from MG63 (ENCLB406URW)

description:
https://www.encodeproject.org/experiments/ENCSR443YJP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR443YJP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB406URW

value: osteosarcoma

value: child

value: 14 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS397GMO at ENCODE; https://www.encodeproject.org/ENCBS397GMO/


title: DNase-seq from T-cell (ENCLB212MYJ)

description:
https://www.encodeproject.org/experiments/ENCSR251INE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR251INE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB212MYJ

source_name: Homo sapiens female adult (24 years) T-cell primary cell

value: T-cell

value: primary cell

value: female

value: 24 year

value: ENCBS306FJR at ENCODE; https://www.encodeproject.org/ENCBS306FJR/

value: Derived from ENCODE donor ENCDO045VWP; https://www.encodeproject.org/ENCDO045VWP/


title: ATAC-seq from HepG2 (ENCLB074EQT)

description:
https://www.encodeproject.org/experiments/ENCSR042AWH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR042AWH
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB074EQT
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens HepG2 cell line

value: cell line

value: male

value: hepatocellular carcinoma

value: 15 year

value: Mats Ljungman, UMichigan

value: ENCBS502XQO at ENCODE; https://www.encodeproject.org/ENCBS502XQO/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from K562 (ENCLB784HIX)

description:
https://www.encodeproject.org/experiments/ENCSR250WFW/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-RREB1 ChIP-seq on human K562
experiment encode accession: ENCSR250WFW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR251EHJ, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB784HIX
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting RREB1

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS107SVF at ENCODE; https://www.encodeproject.org/ENCBS107SVF/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from HepG2 (ENCLB324GIU)

description:
https://www.encodeproject.org/experiments/ENCSR042AWH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR042AWH
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB324GIU
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: child

value: ATCC

value: ENCBS495DEU at ENCODE; https://www.encodeproject.org/ENCBS495DEU/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB926GRK)

description:
https://www.encodeproject.org/experiments/ENCSR763XBU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR763XBU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB926GRK

source_name: Homo sapiens female adult (88 years) dorsolateral prefrontal cortex tissue with Alzheimer's disease

value: dorsolateral prefrontal cortex

value: tissue

value: female

value: 88 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS565TBU at ENCODE; https://www.encodeproject.org/ENCBS565TBU/

value: Derived from ENCODE donor ENCDO070VNS; https://www.encodeproject.org/ENCDO070VNS/


title: TF ChIP-seq from K562 (ENCLB352RJI)

description:
https://www.encodeproject.org/experiments/ENCSR758PLU/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF408 ChIP-seq on human K562
experiment encode accession: ENCSR758PLU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR793RRM, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB352RJI
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF408

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS560JWW at ENCODE; https://www.encodeproject.org/ENCBS560JWW/


title: TF ChIP-seq from K562 (ENCLB043JPH)

description:
https://www.encodeproject.org/experiments/ENCSR758PLU/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF408 ChIP-seq on human K562
experiment encode accession: ENCSR758PLU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR793RRM, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB043JPH
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS074NXB at ENCODE; https://www.encodeproject.org/ENCBS074NXB/


title: DNase-seq from lower lobe of left lung (ENCLB623JHH)

description:
https://www.encodeproject.org/experiments/ENCSR757NJT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR757NJT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB623JHH

source_name: Homo sapiens male adult (60 years) lower lobe of left lung tissue, preserved by flash-freezing

value: lower lobe of left lung

value: male

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: 60 year

value: Yiing Lin, MD, PhD

value: ENCBS581VBR at ENCODE; https://www.encodeproject.org/ENCBS581VBR/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: DNase-seq from posterior cingulate gyrus (ENCLB842PXD)

description:
https://www.encodeproject.org/experiments/ENCSR249RFY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR249RFY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB842PXD

source_name: Homo sapiens female adult (90 or above years) posterior cingulate gyrus tissue with Alzheimer's disease

value: posterior cingulate gyrus

value: tissue

value: female

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS292HQZ at ENCODE; https://www.encodeproject.org/ENCBS292HQZ/

value: Derived from ENCODE donor ENCDO658JXQ; https://www.encodeproject.org/ENCDO658JXQ/


title: TF ChIP-seq from HepG2 (ENCLB367KXI)

description:
https://www.encodeproject.org/experiments/ENCSR041RCS/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-SOX13 ChIP-seq on human HepG2
experiment encode accession: ENCSR041RCS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR592WMK, ENCSR268KJF
encode release date: 2020-07-09
lab: Michael Snyder, Stanford
library encode accession: ENCLB367KXI
size range: 450-650

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting SOX13

value: cell line

value: HepG2 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to SOX13.

value: hepatocellular carcinoma

value: child

value: 15 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS638VTL at ENCODE; https://www.encodeproject.org/ENCBS638VTL/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from transverse colon (ENCLB221KYW)

description:
https://www.encodeproject.org/experiments/ENCSR763AKE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR763AKE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB221KYW

source_name: Homo sapiens female adult (53 years) transverse colon tissue

value: transverse colon

value: adult

value: 53 year

value: Kristin Ardlie

value: ENCBS135NYL at ENCODE; https://www.encodeproject.org/ENCBS135NYL/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: TF ChIP-seq from HepG2 (ENCLB569RGQ)

description:
https://www.encodeproject.org/experiments/ENCSR041RCS/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-SOX13 ChIP-seq on human HepG2
experiment encode accession: ENCSR041RCS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR592WMK, ENCSR268KJF
encode release date: 2020-07-09
lab: Michael Snyder, Stanford
library encode accession: ENCLB569RGQ
size range: 450-650

value: male

value: ENCBS336OFG at ENCODE; https://www.encodeproject.org/ENCBS336OFG/


title: DNase-seq from regulatory T cell (ENCLB851SXY)

description:
https://www.encodeproject.org/experiments/ENCSR042WQA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR042WQA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB851SXY

source_name: Homo sapiens male adult (56 years) regulatory T primary cell

value: regulatory T cell

value: primary cell

value: 56 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS676LUY at ENCODE; https://www.encodeproject.org/ENCBS676LUY/

value: Derived from ENCODE donor ENCDO100JZM; https://www.encodeproject.org/ENCDO100JZM/


title: DNase-seq from T-cell (ENCLB869VFX)

description:
https://www.encodeproject.org/experiments/ENCSR041PCL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR041PCL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB869VFX

source_name: Homo sapiens female adult (33 years) T-cell primary cell

value: T-cell

value: female

value: 33 year

value: ENCBS151DIT at ENCODE; https://www.encodeproject.org/ENCBS151DIT/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: DNase-seq from T-cell (ENCLB845YVQ)

description:
https://www.encodeproject.org/experiments/ENCSR442GKD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR442GKD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB845YVQ

source_name: Homo sapiens male adult (34 years) T-cell primary cell

value: adult

value: 34 year

value: ENCBS757KUG at ENCODE; https://www.encodeproject.org/ENCBS757KUG/

value: Derived from ENCODE donor ENCDO496TPO; https://www.encodeproject.org/ENCDO496TPO/


title: DNase-seq from heart right ventricle (ENCLB891GMF)

description:
https://www.encodeproject.org/experiments/ENCSR246VSO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR246VSO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB891GMF

source_name: Homo sapiens female adult (56 years) heart right ventricle tissue

value: heart right ventricle

value: tissue

value: PGD

value: Michael Snyder, Stanford

value: Shin Lin

value: ENCBS696YMT at ENCODE; https://www.encodeproject.org/ENCBS696YMT/

value: Derived from ENCODE donor ENCDO907YUG; https://www.encodeproject.org/ENCDO907YUG/


title: DNase-seq from pancreas (ENCLB203TGC)

description:
https://www.encodeproject.org/experiments/ENCSR242RPQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR242RPQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB203TGC

source_name: Homo sapiens female child (16 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: DM:no; HTN:no; CAD:no

value: child

value: 16 year

value: Yiing Lin, MD, PhD

value: ENCBS229MRC at ENCODE; https://www.encodeproject.org/ENCBS229MRC/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: DNase-seq from head of caudate nucleus (ENCLB027DIB)

description:
https://www.encodeproject.org/experiments/ENCSR432QFU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR432QFU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB027DIB

source_name: Homo sapiens male adult (73 years) head of caudate nucleus tissue with Cognitive impairment, Alzheimer's disease

value: head of caudate nucleus

value: male

value: adult

value: 73 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS458RSM at ENCODE; https://www.encodeproject.org/ENCBS458RSM/

value: Derived from ENCODE donor ENCDO059BOC; https://www.encodeproject.org/ENCDO059BOC/


title: DNase-seq from head of caudate nucleus (ENCLB725DBB)

description:
https://www.encodeproject.org/experiments/ENCSR756FQD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR756FQD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB725DBB

source_name: Homo sapiens male adult (87 years) head of caudate nucleus tissue with Cognitive impairment, Alzheimer's disease

value: tissue

value: 87 year

value: ENCBS365VGQ at ENCODE; https://www.encodeproject.org/ENCBS365VGQ/

value: Derived from ENCODE donor ENCDO776JEI; https://www.encodeproject.org/ENCDO776JEI/


title: DNase-seq from head of caudate nucleus (ENCLB289UYE)

description:
https://www.encodeproject.org/experiments/ENCSR440BPA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR440BPA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB289UYE

source_name: Homo sapiens female adult (87 years) head of caudate nucleus tissue with Cognitive impairment, Alzheimer's disease

value: female

value: ENCBS683IMC at ENCODE; https://www.encodeproject.org/ENCBS683IMC/

value: Derived from ENCODE donor ENCDO940VNT; https://www.encodeproject.org/ENCDO940VNT/


title: DNase-seq from CD4-positive, alpha-beta memory T cell (ENCLB665UED)

description:
https://www.encodeproject.org/experiments/ENCSR239XNU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR239XNU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB665UED

source_name: Homo sapiens male adult (43 years) CD4-positive, alpha-beta memory T primary cell

value: CD4-positive, alpha-beta memory T cell

value: primary cell

value: 43 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS524VQE at ENCODE; https://www.encodeproject.org/ENCBS524VQE/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: DNase-seq from CD14-positive monocyte (ENCLB257NCR)

description:
https://www.encodeproject.org/experiments/ENCSR241BNZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR241BNZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB257NCR

source_name: Homo sapiens male adult (30 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: male

value: adult

value: 30 year

value: ENCBS310ADW at ENCODE; https://www.encodeproject.org/ENCBS310ADW/

value: Derived from ENCODE donor ENCDO544CHQ; https://www.encodeproject.org/ENCDO544CHQ/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB539SAY)

description:
https://www.encodeproject.org/experiments/ENCSR240TZG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR240TZG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB539SAY

source_name: Homo sapiens male adult (42 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: 42 year

value: John Stamatoyannopoulos, UW

value: ENCBS718BXL at ENCODE; https://www.encodeproject.org/ENCBS718BXL/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: DNase-seq from posterior cingulate gyrus (ENCLB509BSA)

description:
https://www.encodeproject.org/experiments/ENCSR037PIU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR037PIU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB509BSA

source_name: Homo sapiens male adult (80 years) posterior cingulate gyrus tissue with Cognitive impairment, Alzheimer's disease

value: posterior cingulate gyrus

value: tissue

value: 80 year

value: Rush University

value: ENCBS948HVL at ENCODE; https://www.encodeproject.org/ENCBS948HVL/

value: Derived from ENCODE donor ENCDO920NSS; https://www.encodeproject.org/ENCDO920NSS/


title: DNase-seq from heart right ventricle (ENCLB430KLX)

description:
https://www.encodeproject.org/experiments/ENCSR238FMP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR238FMP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB430KLX

source_name: Homo sapiens male adult (40 years) heart right ventricle tissue, preserved by flash-freezing

value: heart right ventricle

value: DM:no; HTN:yes; CAD:no

value: 40 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS211PHF at ENCODE; https://www.encodeproject.org/ENCBS211PHF/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: TF ChIP-seq from K562 (ENCLB754YMC)

description:
https://www.encodeproject.org/experiments/ENCSR250WFW/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-RREB1 ChIP-seq on human K562
experiment encode accession: ENCSR250WFW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR251EHJ, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB754YMC
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting RREB1

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Kevin White

value: ENCBS027BSC at ENCODE; https://www.encodeproject.org/ENCBS027BSC/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB068GAM)

description:
https://www.encodeproject.org/experiments/ENCSR036QIR/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-E2F3 ChIP-seq on human K562
experiment encode accession: ENCSR036QIR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR194QBX
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB068GAM
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting E2F3

value: ENCBS148WAO at ENCODE; https://www.encodeproject.org/ENCBS148WAO/


title: DNase-seq from posterior cingulate gyrus (ENCLB709CTX)

description:
https://www.encodeproject.org/experiments/ENCSR784GVR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR784GVR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB709CTX

source_name: Homo sapiens female adult (90 or above years) posterior cingulate gyrus tissue with mild cognitive impairment

value: posterior cingulate gyrus

value: tissue

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS839MHS at ENCODE; https://www.encodeproject.org/ENCBS839MHS/

value: Derived from ENCODE donor ENCDO343SFL; https://www.encodeproject.org/ENCDO343SFL/


title: DNase-seq from left hindlimb (ENCLB988UAS)

description:
https://www.encodeproject.org/experiments/ENCSR431UEM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR431UEM
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2018-01-29
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB988UAS
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens male embryo (81 days) left hindlimb tissue

value: left hindlimb

value: left leg

value: male

value: embryonic

value: 81 day

value: BDRL

value: ENCBS490PBA at ENCODE; https://www.encodeproject.org/ENCBS490PBA/

value: Derived from ENCODE donor ENCDO184UZW; https://www.encodeproject.org/ENCDO184UZW/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB231QSX)

description:
https://www.encodeproject.org/experiments/ENCSR751VMX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR751VMX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB231QSX

source_name: Homo sapiens female adult (90 or above years) dorsolateral prefrontal cortex tissue with mild cognitive impairment

value: dorsolateral prefrontal cortex

value: female

value: adult

value: ENCBS081COY at ENCODE; https://www.encodeproject.org/ENCBS081COY/

value: Derived from ENCODE donor ENCDO739EFE; https://www.encodeproject.org/ENCDO739EFE/


title: TF ChIP-seq from K562 (ENCLB016QDI)

description:
https://www.encodeproject.org/experiments/ENCSR036QIR/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-E2F3 ChIP-seq on human K562
experiment encode accession: ENCSR036QIR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR194QBX
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB016QDI
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS787SWQ at ENCODE; https://www.encodeproject.org/ENCBS787SWQ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB161GCE)

description:
https://www.encodeproject.org/experiments/ENCSR236JZN/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF586 ChIP-seq on human K562
experiment encode accession: ENCSR236JZN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR754EHE, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB161GCE
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF586

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF586.

value: ENCBS877RWR at ENCODE; https://www.encodeproject.org/ENCBS877RWR/


title: TF ChIP-seq from GM12878 (ENCLB447MPY)

description:
https://www.encodeproject.org/experiments/ENCSR748SQL/
***************
biological replicate number: 2
technical replicate number: 1
description: GM12878 immortalized cell line stably expressing C-terminal eGFP-PRDM15 fusion protein.
experiment encode accession: ENCSR748SQL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR413QNG
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB447MPY
size range: 450-650

source_name: Homo sapiens GM12878 cell line genetically modified (insertion) using CRISPR targeting PRDM15

value: GM12878 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to PRDM15.

value: unknown

value: ENCBS415DVP at ENCODE; https://www.encodeproject.org/ENCBS415DVP/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/


title: DNase-seq from thyroid gland (ENCLB346CSF)

description:
https://www.encodeproject.org/experiments/ENCSR749MUH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR749MUH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2019-11-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB346CSF

source_name: Homo sapiens thyroid gland tissue male adult (37 years)

value: thyroid gland

value: tissue

value: male

value: 37 year

value: John Stamatoyannopoulos, UW

value: ENCBS658GLE at ENCODE; https://www.encodeproject.org/ENCBS658GLE/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB758UZG)

description:
https://www.encodeproject.org/experiments/ENCSR749WVO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR749WVO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB758UZG

source_name: Homo sapiens male adult (89 years) dorsolateral prefrontal cortex tissue with mild cognitive impairment

value: dorsolateral prefrontal cortex

value: adult

value: 89 year

value: Rush University

value: ENCBS342URJ at ENCODE; https://www.encodeproject.org/ENCBS342URJ/

value: Derived from ENCODE donor ENCDO697SWU; https://www.encodeproject.org/ENCDO697SWU/


title: DNase-seq from CD8-positive naive resting alpha-beta T cell (ENCLB671NLM)

description:
https://www.encodeproject.org/experiments/ENCSR237BOF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR237BOF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB671NLM

source_name: Homo sapiens male adult (30 years) CD8-positive naive resting alpha-beta T primary cell

value: primary cell

value: 30 year

value: AllCells

value: ENCBS484PXS at ENCODE; https://www.encodeproject.org/ENCBS484PXS/

value: Derived from ENCODE donor ENCDO739OLY; https://www.encodeproject.org/ENCDO739OLY/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB356MWV)

description:
https://www.encodeproject.org/experiments/ENCSR036ELY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR036ELY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB356MWV

value: CD4-positive, alpha-beta T cell

value: 42 year

value: ENCBS225VLZ at ENCODE; https://www.encodeproject.org/ENCBS225VLZ/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: TF ChIP-seq from K562 (ENCLB263WUS)

description:
https://www.encodeproject.org/experiments/ENCSR236JZN/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF586 ChIP-seq on human K562
experiment encode accession: ENCSR236JZN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR754EHE, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB263WUS
size range: 450-650

value: cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF586.

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS448LNP at ENCODE; https://www.encodeproject.org/ENCBS448LNP/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB218IUC)

description:
https://www.encodeproject.org/experiments/ENCSR492IHH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR492IHH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB218IUC
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ISL2

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS510UMV at ENCODE; https://www.encodeproject.org/ENCBS510UMV/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB606HAA)

description:
https://www.encodeproject.org/experiments/ENCSR492IHH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR492IHH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB606HAA
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS113BAY at ENCODE; https://www.encodeproject.org/ENCBS113BAY/


title: TF ChIP-seq from HepG2 (ENCLB983QYD)

description:
https://www.encodeproject.org/experiments/ENCSR843QIL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR843QIL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB983QYD
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ATAD3A

value: ENCBS151TAR at ENCODE; https://www.encodeproject.org/ENCBS151TAR/


title: TF ChIP-seq from K562 (ENCLB165SXO)

description:
https://www.encodeproject.org/experiments/ENCSR235PYI/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF41 ChIP-seq on human K562
experiment encode accession: ENCSR235PYI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR006OWT, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB165SXO
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF41

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS246SAJ at ENCODE; https://www.encodeproject.org/ENCBS246SAJ/


title: DNase-seq from T-helper 1 cell (ENCLB561BDK)

description:
https://www.encodeproject.org/experiments/ENCSR035SZE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR035SZE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB561BDK

source_name: Homo sapiens male adult (56 years) T-helper 1 primary cell

value: T-helper 1 cell

value: primary cell

value: 56 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS176QGM at ENCODE; https://www.encodeproject.org/ENCBS176QGM/

value: Derived from ENCODE donor ENCDO100JZM; https://www.encodeproject.org/ENCDO100JZM/


title: TF ChIP-seq from HepG2 (ENCLB751TTX)

description:
https://www.encodeproject.org/experiments/ENCSR490AMH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR490AMH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB751TTX
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting FOXA2

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS015OEG at ENCODE; https://www.encodeproject.org/ENCBS015OEG/


title: TF ChIP-seq from A549 (ENCLB635ZAB)

description:
https://www.encodeproject.org/experiments/ENCSR748HJZ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-HOXB5 ChIP-seq on human A549
experiment encode accession: ENCSR748HJZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR928HJI, ENCSR382YXI
encode release date: 2020-07-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB635ZAB
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting HOXB5

value: cell line

value: 58 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS381ACY at ENCODE; https://www.encodeproject.org/ENCBS381ACY/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from HepG2 (ENCLB770EEW)

description:
https://www.encodeproject.org/experiments/ENCSR490AMH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR490AMH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB770EEW
fragmentation methods: sonication (generic)

value: ENCBS773YDK at ENCODE; https://www.encodeproject.org/ENCBS773YDK/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from GM12878 (ENCLB150IGC)

description:
https://www.encodeproject.org/experiments/ENCSR748SQL/
***************
biological replicate number: 1
technical replicate number: 1
description: GM12878 immortalized cell line stably expressing C-terminal eGFP-PRDM15 fusion protein.
experiment encode accession: ENCSR748SQL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR413QNG
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB150IGC
size range: 450-650

value: GM12878 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to PRDM15.

value: female

value: unknown

value: adult

value: Kevin White

value: ENCBS054IQO at ENCODE; https://www.encodeproject.org/ENCBS054IQO/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/


title: TF ChIP-seq from A549 (ENCLB418EUM)

description:
https://www.encodeproject.org/experiments/ENCSR748HJZ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-HOXB5 ChIP-seq on human A549
experiment encode accession: ENCSR748HJZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR928HJI, ENCSR382YXI
encode release date: 2020-07-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB418EUM
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: male

value: ENCBS647VTU at ENCODE; https://www.encodeproject.org/ENCBS647VTU/


title: TF ChIP-seq from HepG2 (ENCLB999FOD)

description:
https://www.encodeproject.org/experiments/ENCSR107DKT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR107DKT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB999FOD
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting SP140L

value: cell line

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS603XMN at ENCODE; https://www.encodeproject.org/ENCBS603XMN/


title: TF ChIP-seq from HepG2 (ENCLB778VYZ)

description:
https://www.encodeproject.org/experiments/ENCSR843QIL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR843QIL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB778VYZ
fragmentation methods: sonication (generic)

value: ENCBS233VMK at ENCODE; https://www.encodeproject.org/ENCBS233VMK/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from pancreas (ENCLB892SYO)

description:
https://www.encodeproject.org/experiments/ENCSR236KPK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR236KPK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB892SYO

source_name: Homo sapiens female adult (47 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: tissue

value: female

value: DM:yes; HTN:yes; CAD:no

value: 47 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS441SQC at ENCODE; https://www.encodeproject.org/ENCBS441SQC/

value: Derived from ENCODE donor ENCDO528BHB; https://www.encodeproject.org/ENCDO528BHB/


title: TF ChIP-seq from HepG2 (ENCLB256ILH)

description:
https://www.encodeproject.org/experiments/ENCSR107DKT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR107DKT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB256ILH
fragmentation methods: sonication (generic)

value: cell line

value: male

value: hepatocellular carcinoma

value: ENCBS045EXY at ENCODE; https://www.encodeproject.org/ENCBS045EXY/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB651MFL)

description:
https://www.encodeproject.org/experiments/ENCSR428ZCP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR428ZCP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB651MFL

source_name: Homo sapiens female adult (90 or above years) dorsolateral prefrontal cortex tissue with Cognitive impairment, Alzheimer's disease

value: dorsolateral prefrontal cortex

value: adult

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS602VFI at ENCODE; https://www.encodeproject.org/ENCBS602VFI/

value: Derived from ENCODE donor ENCDO754RFQ; https://www.encodeproject.org/ENCDO754RFQ/


title: DNase-seq from head of caudate nucleus (ENCLB333UCS)

description:
https://www.encodeproject.org/experiments/ENCSR239MQN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR239MQN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB333UCS

source_name: Homo sapiens female adult (82 years) head of caudate nucleus tissue

value: head of caudate nucleus

value: tissue

value: female

value: 82 year

value: ENCBS958MQK at ENCODE; https://www.encodeproject.org/ENCBS958MQK/

value: Derived from ENCODE donor ENCDO290OPS; https://www.encodeproject.org/ENCDO290OPS/


title: DNase-seq from head of caudate nucleus (ENCLB304QEO)

description:
https://www.encodeproject.org/experiments/ENCSR234VLI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR234VLI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB304QEO

source_name: Homo sapiens male adult (87 years) head of caudate nucleus tissue

value: 87 year

value: ENCBS611KHQ at ENCODE; https://www.encodeproject.org/ENCBS611KHQ/

value: Derived from ENCODE donor ENCDO203ASI; https://www.encodeproject.org/ENCDO203ASI/


title: TF ChIP-seq from HepG2 (ENCLB336YXN)

description:
https://www.encodeproject.org/experiments/ENCSR298DSB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR298DSB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB336YXN
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF180

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS822FSJ at ENCODE; https://www.encodeproject.org/ENCBS822FSJ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB914HVL)

description:
https://www.encodeproject.org/experiments/ENCSR235OZX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR235OZX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB914HVL

source_name: Homo sapiens female adult (33 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: primary cell

value: adult

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS219DIA at ENCODE; https://www.encodeproject.org/ENCBS219DIA/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: TF ChIP-seq from HepG2 (ENCLB977IEX)

description:
https://www.encodeproject.org/experiments/ENCSR298DSB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR298DSB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB977IEX
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS273JIW at ENCODE; https://www.encodeproject.org/ENCBS273JIW/


title: DNase-seq from heart left ventricle (ENCLB714IRA)

description:
https://www.encodeproject.org/experiments/ENCSR747SEU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR747SEU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB714IRA

source_name: Homo sapiens female adult (46 years) heart left ventricle tissue, preserved by flash-freezing

value: heart left ventricle

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: 46 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS529IEZ at ENCODE; https://www.encodeproject.org/ENCBS529IEZ/

value: Derived from ENCODE donor ENCDO411EVD; https://www.encodeproject.org/ENCDO411EVD/


title: DNase-seq from T-helper 17 cell (ENCLB275LKT)

description:
https://www.encodeproject.org/experiments/ENCSR747RGR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR747RGR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB275LKT

source_name: Homo sapiens male adult (24 years) T-helper 17 primary cell

value: T-helper 17 cell

value: primary cell

value: male

value: adult

value: 24 year

value: ENCBS342SQN at ENCODE; https://www.encodeproject.org/ENCBS342SQN/

value: Derived from ENCODE donor ENCDO786GVO; https://www.encodeproject.org/ENCDO786GVO/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB200PZR)

description:
https://www.encodeproject.org/experiments/ENCSR426KLJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR426KLJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB200PZR

source_name: Homo sapiens female adult (87 years) dorsolateral prefrontal cortex tissue with Cognitive impairment, Alzheimer's disease

value: dorsolateral prefrontal cortex

value: 87 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS638UUW at ENCODE; https://www.encodeproject.org/ENCBS638UUW/

value: Derived from ENCODE donor ENCDO940VNT; https://www.encodeproject.org/ENCDO940VNT/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB880DVU)

description:
https://www.encodeproject.org/experiments/ENCSR424JPH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR424JPH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB880DVU

value: CD8-positive, alpha-beta T cell

value: female

value: 33 year

value: AllCells

value: ENCBS374JMM at ENCODE; https://www.encodeproject.org/ENCBS374JMM/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: TF ChIP-seq from HepG2 (ENCLB880VCE)

description:
https://www.encodeproject.org/experiments/ENCSR291MJH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR291MJH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB880VCE
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting MEF2A

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS528QGP at ENCODE; https://www.encodeproject.org/ENCBS528QGP/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB992BIN)

description:
https://www.encodeproject.org/experiments/ENCSR099FCQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR099FCQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB992BIN
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting USF1

value: ENCBS911WQW at ENCODE; https://www.encodeproject.org/ENCBS911WQW/


title: DNase-seq from heart right ventricle (ENCLB608VQR)

description:
https://www.encodeproject.org/experiments/ENCSR746RDJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR746RDJ
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2017-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB608VQR
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500,Illumina HiSeq 2500

source_name: Homo sapiens female embryo (101 days) heart right ventricle tissue

value: heart right ventricle

value: tissue

value: embryonic

value: 101 day

value: John Stamatoyannopoulos, UW

value: BDRL

value: ENCBS694BHU at ENCODE; https://www.encodeproject.org/ENCBS694BHU/

value: Derived from ENCODE donor ENCDO060OTP; https://www.encodeproject.org/ENCDO060OTP/


title: TF ChIP-seq from HepG2 (ENCLB050KEJ)

description:
https://www.encodeproject.org/experiments/ENCSR291MJH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR291MJH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB050KEJ
fragmentation methods: sonication (generic)

value: cell line

value: male

value: ENCBS614MQT at ENCODE; https://www.encodeproject.org/ENCBS614MQT/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB744LSC)

description:
https://www.encodeproject.org/experiments/ENCSR744UQK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR744UQK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB744LSC

value: CD8-positive, alpha-beta T cell

value: primary cell

value: female

value: adult

value: 33 year

value: AllCells

value: ENCBS762MWS at ENCODE; https://www.encodeproject.org/ENCBS762MWS/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: TF ChIP-seq from HepG2 (ENCLB929UMW)

description:
https://www.encodeproject.org/experiments/ENCSR099FCQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR099FCQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB929UMW
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS172QXT at ENCODE; https://www.encodeproject.org/ENCBS172QXT/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from head of caudate nucleus (ENCLB371QMV)

description:
https://www.encodeproject.org/experiments/ENCSR742HBK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR742HBK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB371QMV

source_name: Homo sapiens male adult (86 years) head of caudate nucleus tissue

value: head of caudate nucleus

value: tissue

value: male

value: 86 year

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS240VZM at ENCODE; https://www.encodeproject.org/ENCBS240VZM/

value: Derived from ENCODE donor ENCDO022VWV; https://www.encodeproject.org/ENCDO022VWV/


title: DNase-seq from left cardiac atrium (ENCLB954RME)

description:
https://www.encodeproject.org/experiments/ENCSR032NNU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR032NNU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB954RME

source_name: Homo sapiens female adult (59 years) left cardiac atrium tissue, preserved by flash-freezing

value: left cardiac atrium

value: female

value: DM:yes; HTN:yes; CAD:no

value: adult

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS303TME at ENCODE; https://www.encodeproject.org/ENCBS303TME/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: TF ChIP-seq from HepG2 (ENCLB893FAU)

description:
https://www.encodeproject.org/experiments/ENCSR837GLU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR837GLU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB893FAU
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF232

value: cell line

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS783OOK at ENCODE; https://www.encodeproject.org/ENCBS783OOK/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB678OXX)

description:
https://www.encodeproject.org/experiments/ENCSR837GLU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR837GLU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB678OXX
fragmentation methods: sonication (generic)

value: male

value: ENCBS844NGM at ENCODE; https://www.encodeproject.org/ENCBS844NGM/


title: ATAC-seq from MCF-7 (ENCLB303WWU)

description:
https://www.encodeproject.org/experiments/ENCSR422SUG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR422SUG
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB303WWU
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens MCF-7 cell line

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: Mats Ljungman, UMichigan

value: ATCC

value: ENCBS352FBE at ENCODE; https://www.encodeproject.org/ENCBS352FBE/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ATAC-seq from MCF-7 (ENCLB657JDY)

description:
https://www.encodeproject.org/experiments/ENCSR422SUG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR422SUG
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB657JDY
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: cell line

value: adult

value: ENCBS105SMU at ENCODE; https://www.encodeproject.org/ENCBS105SMU/


title: TF ChIP-seq from HepG2 (ENCLB232YYX)

description:
https://www.encodeproject.org/experiments/ENCSR486JYI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR486JYI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB232YYX
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting E2F5

value: hepatocellular carcinoma

value: child

value: 15 year

value: ENCBS283OHC at ENCODE; https://www.encodeproject.org/ENCBS283OHC/


title: TF ChIP-seq from HepG2 (ENCLB114FVV)

description:
https://www.encodeproject.org/experiments/ENCSR486JYI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR486JYI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB114FVV
fragmentation methods: sonication (generic)

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS906GLZ at ENCODE; https://www.encodeproject.org/ENCBS906GLZ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB201DJU)

description:
https://www.encodeproject.org/experiments/ENCSR289PSX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR289PSX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB201DJU
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting PRDM10

value: male

value: ENCBS453KSY at ENCODE; https://www.encodeproject.org/ENCBS453KSY/


title: DNase-seq from Caco-2 (ENCLB176UZR)

description:
https://www.encodeproject.org/experiments/ENCSR030HFV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR030HFV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB176UZR

source_name: Homo sapiens Caco-2 cell line

value: colorectal adenocarcinoma

value: 72 year

value: John Stamatoyannopoulos, UW

value: ENCBS488ZVR at ENCODE; https://www.encodeproject.org/ENCBS488ZVR/

value: Derived from ENCODE donor ENCDO000ACR; https://www.encodeproject.org/ENCDO000ACR/


title: TF ChIP-seq from HepG2 (ENCLB549CIR)

description:
https://www.encodeproject.org/experiments/ENCSR280SCF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR280SCF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB549CIR
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting KDM4B

value: cell line

value: ENCBS520TPU at ENCODE; https://www.encodeproject.org/ENCBS520TPU/


title: DNase-seq from Caco-2 (ENCLB564DMT)

description:
https://www.encodeproject.org/experiments/ENCSR030HFV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR030HFV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB564DMT

value: adult

value: ATCC

value: ENCBS492GPZ at ENCODE; https://www.encodeproject.org/ENCBS492GPZ/


title: TF ChIP-seq from HepG2 (ENCLB652LQK)

description:
https://www.encodeproject.org/experiments/ENCSR280SCF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR280SCF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB652LQK
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: child

value: 15 year

value: ENCBS638IMM at ENCODE; https://www.encodeproject.org/ENCBS638IMM/


title: TF ChIP-seq from K562 (ENCLB557TLT)

description:
https://www.encodeproject.org/experiments/ENCSR231ZVN/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-FOXA3 ChIP-seq on human K562
experiment encode accession: ENCSR231ZVN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR871LVN
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB557TLT
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting FOXA3

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to FOXA3.

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS269GMZ at ENCODE; https://www.encodeproject.org/ENCBS269GMZ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB147PEX)

description:
https://www.encodeproject.org/experiments/ENCSR289PSX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR289PSX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB147PEX
fragmentation methods: sonication (generic)

value: cell line

value: male

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS050NMT at ENCODE; https://www.encodeproject.org/ENCBS050NMT/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB207PGP)

description:
https://www.encodeproject.org/experiments/ENCSR481QLH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR481QLH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB207PGP
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting NR3C1

value: hepatocellular carcinoma

value: child

value: ENCBS497OYQ at ENCODE; https://www.encodeproject.org/ENCBS497OYQ/


title: DNase-seq from cardiac muscle cell (ENCLB738EDT)

description:
https://www.encodeproject.org/experiments/ENCSR842KCP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR842KCP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2017-11-22
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB738EDT
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500,Illumina HiSeq 4000

source_name: Homo sapiens cardiac muscle in vitro differentiated cells fetal

value: cardiac muscle cell

value: in vitro differentiated cells

value: unknown

value: fetal

value: not collected

value: John Stamatoyannopoulos, UW

value: ENCBS343AKO at ENCODE; https://www.encodeproject.org/ENCBS343AKO/

value: Derived from ENCODE donor ENCDO924HBJ; https://www.encodeproject.org/ENCDO924HBJ/


title: TF ChIP-seq from K562 (ENCLB837CNF)

description:
https://www.encodeproject.org/experiments/ENCSR231ZVN/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-FOXA3 ChIP-seq on human K562
experiment encode accession: ENCSR231ZVN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR871LVN
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB837CNF
size range: 450-650

value: cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to FOXA3.

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS817AYJ at ENCODE; https://www.encodeproject.org/ENCBS817AYJ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB660RTM)

description:
https://www.encodeproject.org/experiments/ENCSR481QLH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR481QLH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB660RTM
fragmentation methods: sonication (generic)

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS786OVZ at ENCODE; https://www.encodeproject.org/ENCBS786OVZ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from K562 (ENCLB040YVL)

description:
https://www.encodeproject.org/experiments/ENCSR044IXA/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF354B ChIP-seq on human K562
experiment encode accession: ENCSR044IXA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR257URH
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB040YVL
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF354B

value: cell line

value: ENCBS433NWI at ENCODE; https://www.encodeproject.org/ENCBS433NWI/


title: TF ChIP-seq from HepG2 (ENCLB340QRL)

description:
https://www.encodeproject.org/experiments/ENCSR803IYP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR803IYP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB340QRL
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZBTB49

value: ENCBS465LAJ at ENCODE; https://www.encodeproject.org/ENCBS465LAJ/