title: TF ChIP-seq from K562 (ENCLB553NMK)

description:
https://www.encodeproject.org/experiments/ENCSR625ZVM/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on K562
experiment encode accession: ENCSR625ZVM
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR000FCA
encode release date: 2020-07-16
lab: Richard Myers, HAIB
library encode accession: ENCLB553NMK
fragmentation methods: see document

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting PRMT5

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Richard Myers, HAIB

value: ATCC

value: ENCBS494BMH at ENCODE; https://www.encodeproject.org/ENCBS494BMH/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB042DAY)

status: Public on Mar 30 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR625ZVM/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on K562
experiment encode accession: ENCSR625ZVM
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR000FCA
encode release date: 2020-07-16
lab: Richard Myers, HAIB
library encode accession: ENCLB042DAY
fragmentation methods: sonication (generic)

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

tag: antibody

tag: line

value: cell line

tag: biosample encode accession

tag: Sex

tag: health state

tag: dev stage

tag: age

tag: lab

tag: source

value: Richard Myers

tag: link

value: ENCBS798PQA at ENCODE; https://www.encodeproject.org/ENCBS798PQA/


title: TF ChIP-seq from HepG2 (ENCLB594HHX)

description:
https://www.encodeproject.org/experiments/ENCSR895KNN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR895KNN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR555EMB
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB594HHX
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting DZIP1

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: ENCBS150CDD at ENCODE; https://www.encodeproject.org/ENCBS150CDD/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB686TYH)

description:
https://www.encodeproject.org/experiments/ENCSR891KNP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR891KNP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR479INP
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB686TYH
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF30

value: ENCBS123ZHK at ENCODE; https://www.encodeproject.org/ENCBS123ZHK/


title: TF ChIP-seq from HepG2 (ENCLB823CCP)

description:
https://www.encodeproject.org/experiments/ENCSR159BTO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR159BTO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR524BHN
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB823CCP
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZKSCAN5

value: ENCBS401WYI at ENCODE; https://www.encodeproject.org/ENCBS401WYI/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB165AIX)

description:
https://www.encodeproject.org/experiments/ENCSR498FCF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR498FCF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB165AIX

source_name: Homo sapiens male adult (38 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: adult

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS163WKJ at ENCODE; https://www.encodeproject.org/ENCBS163WKJ/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB065ZKE)

description:
https://www.encodeproject.org/experiments/ENCSR498RLX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR498RLX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB065ZKE

source_name: Homo sapiens female adult (90 or above years) dorsolateral prefrontal cortex tissue with mild cognitive impairment

value: dorsolateral prefrontal cortex

value: tissue

value: female

value: 90 year or above

value: Rush University

value: ENCBS786SVD at ENCODE; https://www.encodeproject.org/ENCBS786SVD/

value: Derived from ENCODE donor ENCDO153NUY; https://www.encodeproject.org/ENCDO153NUY/


title: DNase-seq from retina (ENCLB943BIU)

description:
https://www.encodeproject.org/experiments/ENCSR621ENC/
***************
biological replicate number: 2
technical replicate number: 1,2
description:
experiment encode accession: ENCSR621ENC
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2016-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB943BIU
fragmentation methods: see document

source_name: Homo sapiens embryo (85 days) retina tissue

value: retina

value: not collected

value: embryonic

value: 85 day

value: Thomas Reh

value: ENCBS277FWQ at ENCODE; https://www.encodeproject.org/ENCBS277FWQ/

value: Derived from ENCODE donor ENCDO411XCR; https://www.encodeproject.org/ENCDO411XCR/


title: TF ChIP-seq from HepG2 (ENCLB257OCO)

description:
https://www.encodeproject.org/experiments/ENCSR159BTO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR159BTO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR524BHN
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB257OCO
fragmentation methods: sonication (generic)

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS595TSE at ENCODE; https://www.encodeproject.org/ENCBS595TSE/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB139PWF)

description:
https://www.encodeproject.org/experiments/ENCSR890DSP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR890DSP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB139PWF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting IRF1

value: ENCBS497IYR at ENCODE; https://www.encodeproject.org/ENCBS497IYR/


title: DNase-seq from retina (ENCLB587HLG)

description:
https://www.encodeproject.org/experiments/ENCSR621ENC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR621ENC
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2016-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB587HLG
fragmentation methods: see document

source_name: Homo sapiens embryo (74 days) retina tissue

value: retina

value: tissue

value: 74 day

value: John Stamatoyannopoulos, UW

value: ENCBS386PSR at ENCODE; https://www.encodeproject.org/ENCBS386PSR/

value: Derived from ENCODE donor ENCDO539WIJ; https://www.encodeproject.org/ENCDO539WIJ/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB811FZE)

description:
https://www.encodeproject.org/experiments/ENCSR849WGE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR849WGE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB811FZE

source_name: Homo sapiens male adult (84 years) dorsolateral prefrontal cortex tissue

value: dorsolateral prefrontal cortex

value: adult

value: 84 year

value: Rush University

value: ENCBS442HZW at ENCODE; https://www.encodeproject.org/ENCBS442HZW/

value: Derived from ENCODE donor ENCDO999WDR; https://www.encodeproject.org/ENCDO999WDR/


title: TF ChIP-seq from HepG2 (ENCLB003PFU)

description:
https://www.encodeproject.org/experiments/ENCSR890DSP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR890DSP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB003PFU
fragmentation methods: sonication (generic)

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: ENCBS543WTI at ENCODE; https://www.encodeproject.org/ENCBS543WTI/


title: TF ChIP-seq from HepG2 (ENCLB312LCA)

description:
https://www.encodeproject.org/experiments/ENCSR530ARJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR530ARJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB312LCA
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting PAXIP1

value: Richard Myers

value: ENCBS896ESQ at ENCODE; https://www.encodeproject.org/ENCBS896ESQ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB768JSJ)

description:
https://www.encodeproject.org/experiments/ENCSR530ARJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR530ARJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB768JSJ
fragmentation methods: sonication (generic)

value: ENCBS009DIM at ENCODE; https://www.encodeproject.org/ENCBS009DIM/


title: TF ChIP-seq from K562 (ENCLB250XOI)

description:
https://www.encodeproject.org/experiments/ENCSR153HNT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR153HNT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR516XLO
encode release date: 2020-07-15
lab: Richard Myers, HAIB
library encode accession: ENCLB250XOI
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting STAG1

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS810TKV at ENCODE; https://www.encodeproject.org/ENCBS810TKV/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB409CSD)

description:
https://www.encodeproject.org/experiments/ENCSR153HNT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR153HNT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR516XLO
encode release date: 2020-07-15
lab: Richard Myers, HAIB
library encode accession: ENCLB409CSD
fragmentation methods: sonication (generic)

value: adult

value: ENCBS165TSP at ENCODE; https://www.encodeproject.org/ENCBS165TSP/


title: DNase-seq from T-cell (ENCLB033KVN)

description:
https://www.encodeproject.org/experiments/ENCSR496UER/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR496UER
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB033KVN

source_name: Homo sapiens male adult (33 years) T-cell primary cell

value: T-cell

value: primary cell

value: male

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS067HEP at ENCODE; https://www.encodeproject.org/ENCBS067HEP/

value: Derived from ENCODE donor ENCDO033NXX; https://www.encodeproject.org/ENCDO033NXX/


title: DNase-seq from head of caudate nucleus (ENCLB051QST)

description:
https://www.encodeproject.org/experiments/ENCSR496PSH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR496PSH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB051QST

source_name: Homo sapiens female adult (90 or above years) head of caudate nucleus tissue with mild cognitive impairment

value: head of caudate nucleus

value: tissue

value: 90 year or above

value: Rush University

value: ENCBS988HMA at ENCODE; https://www.encodeproject.org/ENCBS988HMA/

value: Derived from ENCODE donor ENCDO672KST; https://www.encodeproject.org/ENCDO672KST/


title: TF ChIP-seq from HepG2 (ENCLB769KCR)

description:
https://www.encodeproject.org/experiments/ENCSR887TWV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR887TWV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB769KCR
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ATF5

value: cell line

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS841HHF at ENCODE; https://www.encodeproject.org/ENCBS841HHF/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from head of caudate nucleus (ENCLB278VRT)

description:
https://www.encodeproject.org/experiments/ENCSR849CYU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR849CYU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB278VRT

value: female

value: adult

value: John Stamatoyannopoulos, UW

value: ENCBS538XVG at ENCODE; https://www.encodeproject.org/ENCBS538XVG/

value: Derived from ENCODE donor ENCDO634UMA; https://www.encodeproject.org/ENCDO634UMA/


title: TF ChIP-seq from HepG2 (ENCLB747HNS)

description:
https://www.encodeproject.org/experiments/ENCSR886VSY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR886VSY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR555EMB
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB747HNS
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF224

value: male

value: ENCBS076OKI at ENCODE; https://www.encodeproject.org/ENCBS076OKI/


title: TF ChIP-seq from OCI-LY7 (ENCLB756SRJ)

description:
https://www.encodeproject.org/experiments/ENCSR565XSL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR565XSL
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR063AUO
encode release date: 2018-02-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB756SRJ
fragmentation methods: sonication (generic)
size range: 200-600
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens OCI-LY7 immortalized cell line

tag: description

value: established from the peripheral blood sample of a 48-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL, diffuse large cell lymphoma, DLCL, stage 2A, at relapse) in 1984

value: 48 year

value: B cell lymphoma

value: Bradley Bernstein, Broad

value: ENCBS304FAI at ENCODE; https://www.encodeproject.org/ENCBS304FAI/

value: Derived from ENCODE donor ENCDO351AAA; https://www.encodeproject.org/ENCDO351AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1881; http://web.expasy.org/cellosaurus/CVCL_1881


title: TF ChIP-seq from HepG2 (ENCLB354HUV)

description:
https://www.encodeproject.org/experiments/ENCSR145QNL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR145QNL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP, ENCSR555EMB
encode release date: 2020-10-22
lab: Richard Myers, HAIB
library encode accession: ENCLB354HUV
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting USF2

value: cell line

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS439DEO at ENCODE; https://www.encodeproject.org/ENCBS439DEO/


title: TF ChIP-seq from HepG2 (ENCLB242QKM)

description:
https://www.encodeproject.org/experiments/ENCSR887TWV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR887TWV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB242QKM
fragmentation methods: sonication (generic)

value: ENCBS053JJD at ENCODE; https://www.encodeproject.org/ENCBS053JJD/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from head of caudate nucleus (ENCLB610KQE)

description:
https://www.encodeproject.org/experiments/ENCSR496UJY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR496UJY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB610KQE

value: head of caudate nucleus

value: tissue

value: female

value: adult

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS075FJA at ENCODE; https://www.encodeproject.org/ENCBS075FJA/

value: Derived from ENCODE donor ENCDO033BMB; https://www.encodeproject.org/ENCDO033BMB/


title: TF ChIP-seq from K562 (ENCLB382XOV)

description:
https://www.encodeproject.org/experiments/ENCSR150QDE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR150QDE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR953NJZ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB382XOV
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting SREBF2

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS525RIU at ENCODE; https://www.encodeproject.org/ENCBS525RIU/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB786YWE)

description:
https://www.encodeproject.org/experiments/ENCSR891KNP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR891KNP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR479INP
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB786YWE
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF30

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS277JHT at ENCODE; https://www.encodeproject.org/ENCBS277JHT/


title: DNase-seq from head of caudate nucleus (ENCLB709MGF)

description:
https://www.encodeproject.org/experiments/ENCSR113DHB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR113DHB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB709MGF

value: head of caudate nucleus

value: tissue

value: female

value: adult

value: 90 year or above

value: ENCBS084JJE at ENCODE; https://www.encodeproject.org/ENCBS084JJE/

value: Derived from ENCODE donor ENCDO394ZHU; https://www.encodeproject.org/ENCDO394ZHU/


title: ATAC-seq from sigmoid colon (ENCLB810ERU)

description:
https://www.encodeproject.org/experiments/ENCSR846VLJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human sigmoid colon
experiment encode accession: ENCSR846VLJ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB810ERU
size range: 150-250

source_name: Homo sapiens sigmoid colon tissue female adult (53 years)

value: sigmoid colon

value: Michael Snyder, Stanford

value: 53 year

value: ENCBS835BNK at ENCODE; https://www.encodeproject.org/ENCBS835BNK/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: TF ChIP-seq from HepG2 (ENCLB091ZCZ)

description:
https://www.encodeproject.org/experiments/ENCSR347PUQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR347PUQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB091ZCZ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZXDC

value: ZXDC

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: ENCBS935WII at ENCODE; https://www.encodeproject.org/ENCBS935WII/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ATAC-seq from adrenal gland (ENCLB109CVY)

description:
https://www.encodeproject.org/experiments/ENCSR548KIL/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human adrenal gland
experiment encode accession: ENCSR548KIL
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB109CVY
size range: 150-250

source_name: Homo sapiens adrenal gland tissue male adult (37 years)

value: adrenal gland

value: tissue

value: 37 year

value: ENCBS693ETI at ENCODE; https://www.encodeproject.org/ENCBS693ETI/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: TF ChIP-seq from HepG2 (ENCLB395ZBV)

description:
https://www.encodeproject.org/experiments/ENCSR886VSY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR886VSY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR555EMB
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB395ZBV
fragmentation methods: sonication (generic)

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS580KOI at ENCODE; https://www.encodeproject.org/ENCBS580KOI/


title: DNase-seq from posterior cingulate gyrus (ENCLB327PJG)

description:
https://www.encodeproject.org/experiments/ENCSR112AKE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR112AKE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB327PJG

source_name: Homo sapiens female adult (90 or above years) posterior cingulate gyrus tissue with mild cognitive impairment

value: posterior cingulate gyrus

value: female

value: adult

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS671EQZ at ENCODE; https://www.encodeproject.org/ENCBS671EQZ/

value: Derived from ENCODE donor ENCDO394ZHU; https://www.encodeproject.org/ENCDO394ZHU/


title: TF ChIP-seq from HepG2 (ENCLB365RHC)

description:
https://www.encodeproject.org/experiments/ENCSR145QNL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR145QNL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP, ENCSR555EMB
encode release date: 2020-10-22
lab: Richard Myers, HAIB
library encode accession: ENCLB365RHC
fragmentation methods: sonication (generic)

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: ENCBS105WNJ at ENCODE; https://www.encodeproject.org/ENCBS105WNJ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from T-cell (ENCLB306HYJ)

description:
https://www.encodeproject.org/experiments/ENCSR497NLU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR497NLU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB306HYJ

source_name: Homo sapiens male adult (28 years) T-cell primary cell

value: T-cell

value: primary cell

value: 28 year

value: AllCells

value: ENCBS941PVZ at ENCODE; https://www.encodeproject.org/ENCBS941PVZ/

value: Derived from ENCODE donor ENCDO000TPT; https://www.encodeproject.org/ENCDO000TPT/


title: TF ChIP-seq from K562 (ENCLB725VBW)

description:
https://www.encodeproject.org/experiments/ENCSR150QDE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR150QDE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR953NJZ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB725VBW
fragmentation methods: sonication (generic)

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS669KGI at ENCODE; https://www.encodeproject.org/ENCBS669KGI/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB729HRC)

description:
https://www.encodeproject.org/experiments/ENCSR346BOD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR346BOD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB729HRC
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting TCF7L2

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: ENCBS041YGU at ENCODE; https://www.encodeproject.org/ENCBS041YGU/


title: TF ChIP-seq from HepG2 (ENCLB847EUV)

description:
https://www.encodeproject.org/experiments/ENCSR144NTH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR144NTH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR524BHN
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB847EUV
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting RBAK

value: RBAK

value: ENCBS022QDR at ENCODE; https://www.encodeproject.org/ENCBS022QDR/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB969QSG)

description:
https://www.encodeproject.org/experiments/ENCSR346BOD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR346BOD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB969QSG
fragmentation methods: sonication (generic)

value: ENCBS636GLH at ENCODE; https://www.encodeproject.org/ENCBS636GLH/


title: TF ChIP-seq from HepG2 (ENCLB891DPR)

description:
https://www.encodeproject.org/experiments/ENCSR880PMU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR880PMU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR479INP
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB891DPR
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting LCORL

value: LCORL

value: ENCBS061IGU at ENCODE; https://www.encodeproject.org/ENCBS061IGU/


title: TF ChIP-seq from HepG2 (ENCLB784QYG)

description:
https://www.encodeproject.org/experiments/ENCSR141ELR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR141ELR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB784QYG
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF778

value: ENCBS900XVI at ENCODE; https://www.encodeproject.org/ENCBS900XVI/


title: TF ChIP-seq from HepG2 (ENCLB025JOB)

description:
https://www.encodeproject.org/experiments/ENCSR144NTH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR144NTH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR524BHN
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB025JOB
fragmentation methods: sonication (generic)

value: Richard Myers, HAIB

value: ENCBS219CNS at ENCODE; https://www.encodeproject.org/ENCBS219CNS/


title: TF ChIP-seq from HepG2 (ENCLB769TMD)

description:
https://www.encodeproject.org/experiments/ENCSR880PMU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR880PMU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR479INP
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB769TMD
fragmentation methods: sonication (generic)

value: Richard Myers

value: ENCBS529TTL at ENCODE; https://www.encodeproject.org/ENCBS529TTL/


title: TF ChIP-seq from HepG2 (ENCLB493REL)

description:
https://www.encodeproject.org/experiments/ENCSR141ELR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR141ELR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB493REL
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS525ZKL at ENCODE; https://www.encodeproject.org/ENCBS525ZKL/


title: TF ChIP-seq from HepG2 (ENCLB529RLB)

description:
https://www.encodeproject.org/experiments/ENCSR519QYU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR519QYU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB529RLB
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF101

value: male

value: hepatocellular carcinoma

value: ENCBS998ZSM at ENCODE; https://www.encodeproject.org/ENCBS998ZSM/


title: DNase-seq from cerebellar cortex (ENCLB199OZA)

description:
https://www.encodeproject.org/experiments/ENCSR503HIB/
***************
biological replicate number: 1
technical replicate number: 1,2
description:
experiment encode accession: ENCSR503HIB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB199OZA

source_name: Homo sapiens male adult (84 years) cerebellar cortex tissue

value: cerebellar cortex

value: tissue

value: adult

value: 84 year

value: John Stamatoyannopoulos, UW

value: Thomas Montine

value: ENCBS425ZXM at ENCODE; https://www.encodeproject.org/ENCBS425ZXM/

value: Derived from ENCODE donor ENCDO240JUB; https://www.encodeproject.org/ENCDO240JUB/


title: DNase-seq from cerebellar cortex (ENCLB084WAS)

description:
https://www.encodeproject.org/experiments/ENCSR503HIB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR503HIB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB084WAS

source_name: Homo sapiens male adult (78 years) cerebellar cortex tissue

value: 78 year

value: ENCBS856RUL at ENCODE; https://www.encodeproject.org/ENCBS856RUL/

value: Derived from ENCODE donor ENCDO317XRR; https://www.encodeproject.org/ENCDO317XRR/


title: TF ChIP-seq from HepG2 (ENCLB566UMI)

description:
https://www.encodeproject.org/experiments/ENCSR519QYU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR519QYU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB566UMI
fragmentation methods: sonication (generic)

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS869MRH at ENCODE; https://www.encodeproject.org/ENCBS869MRH/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB730BGQ)

description:
https://www.encodeproject.org/experiments/ENCSR347PUQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR347PUQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB730BGQ
fragmentation methods: sonication (generic)

value: ZXDC

value: cell line

value: male

value: hepatocellular carcinoma

value: ENCBS757BQX at ENCODE; https://www.encodeproject.org/ENCBS757BQX/


title: ATAC-seq from gastrocnemius medialis (ENCLB850JUY)

description:
https://www.encodeproject.org/experiments/ENCSR308HPZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human gastrocnemius medialis
experiment encode accession: ENCSR308HPZ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB850JUY
size range: 150-250

source_name: Homo sapiens gastrocnemius medialis tissue male adult (54 years)

value: gastrocnemius medialis

value: tissue

value: Michael Snyder, Stanford

value: 54 year

value: adult

value: ENCBS291EBC at ENCODE; https://www.encodeproject.org/ENCBS291EBC/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ATAC-seq from adrenal gland (ENCLB245QUV)

description:
https://www.encodeproject.org/experiments/ENCSR113MBR/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human adrenal gland
experiment encode accession: ENCSR113MBR
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB245QUV
size range: 150-250

source_name: Homo sapiens adrenal gland tissue male adult (54 years)

value: adrenal gland

value: ENCBS063ABX at ENCODE; https://www.encodeproject.org/ENCBS063ABX/


title: TF ChIP-seq from HepG2 (ENCLB698UZB)

description:
https://www.encodeproject.org/experiments/ENCSR518KLO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR518KLO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR555EMB
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB698UZB
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting NRL

value: NRL

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS199EQM at ENCODE; https://www.encodeproject.org/ENCBS199EQM/


title: TF ChIP-seq from HepG2 (ENCLB652BLL)

description:
https://www.encodeproject.org/experiments/ENCSR518KLO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR518KLO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR555EMB
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB652BLL
fragmentation methods: sonication (generic)

value: cell line

value: male

value: hepatocellular carcinoma

value: ENCBS155IYH at ENCODE; https://www.encodeproject.org/ENCBS155IYH/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB975JMX)

description:
https://www.encodeproject.org/experiments/ENCSR516DDO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR516DDO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB975JMX
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ATF7

value: ENCBS545DYL at ENCODE; https://www.encodeproject.org/ENCBS545DYL/


title: TF ChIP-seq from HepG2 (ENCLB165DFT)

description:
https://www.encodeproject.org/experiments/ENCSR516DDO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR516DDO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB165DFT
fragmentation methods: sonication (generic)

value: ENCBS122YXB at ENCODE; https://www.encodeproject.org/ENCBS122YXB/


title: TF ChIP-seq from HepG2 (ENCLB886LDW)

description:
https://www.encodeproject.org/experiments/ENCSR130ZAR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR130ZAR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB886LDW
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF691

value: ENCBS227GXO at ENCODE; https://www.encodeproject.org/ENCBS227GXO/


title: TF ChIP-seq from HepG2 (ENCLB333RGZ)

description:
https://www.encodeproject.org/experiments/ENCSR130ZAR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR130ZAR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB333RGZ
fragmentation methods: sonication (generic)

value: ENCBS613FLY at ENCODE; https://www.encodeproject.org/ENCBS613FLY/


title: TF ChIP-seq from HepG2 (ENCLB427FRF)

description:
https://www.encodeproject.org/experiments/ENCSR127XTZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR127XTZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR621FPD
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB427FRF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting HNF1B

value: ENCBS521VLE at ENCODE; https://www.encodeproject.org/ENCBS521VLE/


title: TF ChIP-seq from HepG2 (ENCLB483BHC)

description:
https://www.encodeproject.org/experiments/ENCSR513NBU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR513NBU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB483BHC
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF713

value: ENCBS346TGB at ENCODE; https://www.encodeproject.org/ENCBS346TGB/


title: TF ChIP-seq from HepG2 (ENCLB333GKE)

description:
https://www.encodeproject.org/experiments/ENCSR513NBU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR513NBU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB333GKE
fragmentation methods: sonication (generic)

value: ENCBS302DMG at ENCODE; https://www.encodeproject.org/ENCBS302DMG/


title: TF ChIP-seq from HepG2 (ENCLB473FVS)

description:
https://www.encodeproject.org/experiments/ENCSR514RAH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR514RAH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB473FVS
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting RARG

value: RARG

value: child

value: ENCBS537GUP at ENCODE; https://www.encodeproject.org/ENCBS537GUP/


title: TF ChIP-seq from HepG2 (ENCLB500IOM)

description:
https://www.encodeproject.org/experiments/ENCSR510GKB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR510GKB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR770PLF
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB500IOM
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF770

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS704KGP at ENCODE; https://www.encodeproject.org/ENCBS704KGP/


title: TF ChIP-seq from HepG2 (ENCLB411QIR)

description:
https://www.encodeproject.org/experiments/ENCSR127XTZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR127XTZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR621FPD
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB411QIR
fragmentation methods: sonication (generic)

value: cell line

value: male

value: hepatocellular carcinoma

value: ENCBS548CEO at ENCODE; https://www.encodeproject.org/ENCBS548CEO/


title: TF ChIP-seq from HepG2 (ENCLB369JWI)

description:
https://www.encodeproject.org/experiments/ENCSR871VNN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR871VNN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB369JWI
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF274

value: ENCBS766QPV at ENCODE; https://www.encodeproject.org/ENCBS766QPV/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB532ANN)

description:
https://www.encodeproject.org/experiments/ENCSR871VNN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR871VNN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB532ANN
fragmentation methods: sonication (generic)

value: ENCBS517FJL at ENCODE; https://www.encodeproject.org/ENCBS517FJL/


title: TF ChIP-seq from HepG2 (ENCLB869TSF)

description:
https://www.encodeproject.org/experiments/ENCSR127IHN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR127IHN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB869TSF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF737

value: ENCBS822EPH at ENCODE; https://www.encodeproject.org/ENCBS822EPH/


title: TF ChIP-seq from K562 (ENCLB939YUU)

description:
https://www.encodeproject.org/experiments/ENCSR125RFR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR125RFR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR953NJZ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB939YUU
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ATF6

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS716QFX at ENCODE; https://www.encodeproject.org/ENCBS716QFX/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB250BWK)

description:
https://www.encodeproject.org/experiments/ENCSR125RFR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR125RFR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR953NJZ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB250BWK
fragmentation methods: sonication (generic)

value: Richard Myers, HAIB

value: ENCBS179GIU at ENCODE; https://www.encodeproject.org/ENCBS179GIU/


title: TF ChIP-seq from HepG2 (ENCLB517DUC)

description:
https://www.encodeproject.org/experiments/ENCSR127IHN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR127IHN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB517DUC
fragmentation methods: sonication (generic)

value: child

value: 15 year

value: Richard Myers

value: ENCBS614XAV at ENCODE; https://www.encodeproject.org/ENCBS614XAV/


title: ATAC-seq from K562 (ENCLB568PER)

description:
https://www.encodeproject.org/experiments/ENCSR868FGK/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR868FGK
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB568PER
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens K562 cell line

value: cell line

value: Michael Snyder, Stanford

value: ATCC

value: ENCBS030HJI at ENCODE; https://www.encodeproject.org/ENCBS030HJI/


title: ATAC-seq from K562 (ENCLB674HYQ)

description:
https://www.encodeproject.org/experiments/ENCSR868FGK/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR868FGK
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB674HYQ
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: ENCBS049FLD at ENCODE; https://www.encodeproject.org/ENCBS049FLD/


title: TF ChIP-seq from HepG2 (ENCLB415MPM)

description:
https://www.encodeproject.org/experiments/ENCSR510GKB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR510GKB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR770PLF
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB415MPM
fragmentation methods: sonication (generic)

value: male

value: hepatocellular carcinoma

value: ENCBS416VPB at ENCODE; https://www.encodeproject.org/ENCBS416VPB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB982LBJ)

description:
https://www.encodeproject.org/experiments/ENCSR123GPC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR123GPC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-21
lab: Richard Myers, HAIB
library encode accession: ENCLB982LBJ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting THAP9

value: ENCBS715EOS at ENCODE; https://www.encodeproject.org/ENCBS715EOS/


title: TF ChIP-seq from HepG2 (ENCLB623MFB)

description:
https://www.encodeproject.org/experiments/ENCSR505UNL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR505UNL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB623MFB
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF333

value: ENCBS731DIQ at ENCODE; https://www.encodeproject.org/ENCBS731DIQ/


title: TF ChIP-seq from HepG2 (ENCLB118XQY)

description:
https://www.encodeproject.org/experiments/ENCSR505UNL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR505UNL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB118XQY
fragmentation methods: sonication (generic)

value: Richard Myers, HAIB

value: ENCBS889SUG at ENCODE; https://www.encodeproject.org/ENCBS889SUG/


title: ATAC-seq from K562 (ENCLB292FDF)

description:
https://www.encodeproject.org/experiments/ENCSR868FGK/
***************
biological replicate number: 3
technical replicate number: 1
description: ATAC-seq on human cell line K562
experiment encode accession: ENCSR868FGK
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB292FDF
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS254OQS at ENCODE; https://www.encodeproject.org/ENCBS254OQS/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB478LNL)

description:
https://www.encodeproject.org/experiments/ENCSR505DVB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR505DVB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR524BHN
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB478LNL
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZMYM3

value: cell line

value: child

value: 15 year

value: Richard Myers

value: ENCBS013KVJ at ENCODE; https://www.encodeproject.org/ENCBS013KVJ/


title: TF ChIP-seq from HepG2 (ENCLB186QNA)

description:
https://www.encodeproject.org/experiments/ENCSR514RAH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR514RAH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB186QNA
fragmentation methods: sonication (generic)

value: RARG

value: male

value: hepatocellular carcinoma

value: ENCBS183PWA at ENCODE; https://www.encodeproject.org/ENCBS183PWA/


title: TF ChIP-seq from HepG2 (ENCLB310ATV)

description:
https://www.encodeproject.org/experiments/ENCSR505DVB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR505DVB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR524BHN
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB310ATV
fragmentation methods: sonication (generic)

value: Richard Myers, HAIB

value: ENCBS456TDV at ENCODE; https://www.encodeproject.org/ENCBS456TDV/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB059ORW)

description:
https://www.encodeproject.org/experiments/ENCSR862VDD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR862VDD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR388OQM
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB059ORW
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZIK1

value: ENCBS442EIV at ENCODE; https://www.encodeproject.org/ENCBS442EIV/


title: TF ChIP-seq from HepG2 (ENCLB240MBN)

description:
https://www.encodeproject.org/experiments/ENCSR862LJQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR862LJQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB240MBN
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF296

value: ENCBS910JUY at ENCODE; https://www.encodeproject.org/ENCBS910JUY/


title: TF ChIP-seq from HepG2 (ENCLB508POD)

description:
https://www.encodeproject.org/experiments/ENCSR123GPC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR123GPC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-21
lab: Richard Myers, HAIB
library encode accession: ENCLB508POD
fragmentation methods: sonication (generic)

value: ENCBS053YXC at ENCODE; https://www.encodeproject.org/ENCBS053YXC/


title: TF ChIP-seq from HepG2 (ENCLB444TOR)

description:
https://www.encodeproject.org/experiments/ENCSR862LJQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR862LJQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB444TOR
fragmentation methods: sonication (generic)

value: ENCBS542UCR at ENCODE; https://www.encodeproject.org/ENCBS542UCR/


title: TF ChIP-seq from HepG2 (ENCLB700XLK)

description:
https://www.encodeproject.org/experiments/ENCSR856QJP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR856QJP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB700XLK
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF775

value: ENCBS980YGG at ENCODE; https://www.encodeproject.org/ENCBS980YGG/


title: TF ChIP-seq from HepG2 (ENCLB226KHE)

description:
https://www.encodeproject.org/experiments/ENCSR502YME/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR502YME
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB226KHE
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting GLI4

value: cell line

value: ENCBS304LOT at ENCODE; https://www.encodeproject.org/ENCBS304LOT/


title: TF ChIP-seq from HepG2 (ENCLB105VAQ)

description:
https://www.encodeproject.org/experiments/ENCSR856QJP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR856QJP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB105VAQ
fragmentation methods: sonication (generic)

value: child

value: 15 year

value: ENCBS773FYU at ENCODE; https://www.encodeproject.org/ENCBS773FYU/


title: TF ChIP-seq from K562 (ENCLB665VNE)

description:
https://www.encodeproject.org/experiments/ENCSR116NDV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR116NDV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR953NJZ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB665VNE
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting CBFB

value: CBFB

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Richard Myers

value: ENCBS748VDC at ENCODE; https://www.encodeproject.org/ENCBS748VDC/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB275FQK)

description:
https://www.encodeproject.org/experiments/ENCSR862VDD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR862VDD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR388OQM
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB275FQK
fragmentation methods: sonication (generic)

value: male

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS673FQN at ENCODE; https://www.encodeproject.org/ENCBS673FQN/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB717HTF)

description:
https://www.encodeproject.org/experiments/ENCSR849FVL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR849FVL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR770PLF
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB717HTF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting GFI1

value: cell line

value: ENCBS953EXK at ENCODE; https://www.encodeproject.org/ENCBS953EXK/


title: TF ChIP-seq from K562 (ENCLB372WZK)

description:
https://www.encodeproject.org/experiments/ENCSR116NDV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR116NDV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR953NJZ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB372WZK
fragmentation methods: sonication (generic)

value: ENCBS969VKC at ENCODE; https://www.encodeproject.org/ENCBS969VKC/


title: DNase-seq from lung (ENCLB458QSJ)

description:
https://www.encodeproject.org/experiments/ENCSR627NIF/
***************
biological replicate number: 2
technical replicate number: 2,1
description: DNase-seq on 58 day old fetal male human lung tissue
experiment encode accession: ENCSR627NIF
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB458QSJ
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Homo sapiens male embryo (54 days) lung tissue

value: lung

value: tissue

value: embryonic

value: 54 day

value: John Stamatoyannopoulos, UW

value: BDRL

value: ENCBS546ROL at ENCODE; https://www.encodeproject.org/ENCBS546ROL/

value: Derived from ENCODE donor ENCDO384TLP; https://www.encodeproject.org/ENCDO384TLP/


title: DNase-seq from neural progenitor cell (ENCLB449QVJ)

description:
https://www.encodeproject.org/experiments/ENCSR963ALV/
***************
biological replicate number: 2
technical replicate number: 1
description: DNase-seq on 5 day embryonic female human neural progenitor cell
experiment encode accession: ENCSR963ALV
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2016-06-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB449QVJ

source_name: Homo sapiens neural progenitor in vitro differentiated cells female embryo (5 days) derived from H9

value: neural progenitor cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: female

value: healthy

value: ENCBS044KWE at ENCODE; https://www.encodeproject.org/ENCBS044KWE/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: TF ChIP-seq from OCI-LY7 (ENCLB615QIK)

description:
https://www.encodeproject.org/experiments/ENCSR565XSL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR565XSL
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR063AUO
encode release date: 2018-02-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB615QIK
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens OCI-LY7 immortalized cell line

value: cell line

value: established from the peripheral blood sample of a 48-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL, diffuse large cell lymphoma, DLCL, stage 2A, at relapse) in 1984

value: 48 year

value: adult

value: male

value: B cell lymphoma

value: Bradley Bernstein, Broad

value: ENCBS699NWP at ENCODE; https://www.encodeproject.org/ENCBS699NWP/

value: Derived from ENCODE donor ENCDO351AAA; https://www.encodeproject.org/ENCDO351AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1881; http://web.expasy.org/cellosaurus/CVCL_1881


title: TF ChIP-seq from HepG2 (ENCLB764GDD)

description:
https://www.encodeproject.org/experiments/ENCSR376FMN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR376FMN
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR055XHN
encode release date: 2017-08-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB764GDD
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 4
nucleic acid starting quantity units: ng

source_name: Homo sapiens HepG2 cell line

value: Hep G2 (Hepatocellular carcinoma, human) Hep G2 is a perpetual cell line which was derived from the liver tissue of a 15-year-old Caucasian American male with a well-differentiated hepatocellular carcinoma. These cells are epithelial in morphology, have a model chromosome number of 55, and are not tumorigenic in nude mice.

value: hepatocellular carcinoma

value: child

value: 15 year

value: ATCC

tag: passage number

value: ENCBS127GXY at ENCODE; https://www.encodeproject.org/ENCBS127GXY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from neural progenitor cell (ENCLB057UTE)

description:
https://www.encodeproject.org/experiments/ENCSR963ALV/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on 5 day embryonic female human neural progenitor cell
experiment encode accession: ENCSR963ALV
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2016-06-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB057UTE

value: neural progenitor cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro specified neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: Richard Myers, HAIB

value: ENCBS018TPT at ENCODE; https://www.encodeproject.org/ENCBS018TPT/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: TF ChIP-seq from HepG2 (ENCLB612KQD)

description:
https://www.encodeproject.org/experiments/ENCSR502YME/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR502YME
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB612KQD
fragmentation methods: sonication (generic)

value: cell line

value: male

value: Richard Myers

value: ENCBS670TEB at ENCODE; https://www.encodeproject.org/ENCBS670TEB/


title: DNase-seq from suppressor macrophage (ENCLB960PWM)

description:
https://www.encodeproject.org/experiments/ENCSR371CCL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR371CCL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB960PWM
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (40 years) suppressor macrophage primary cell

value: suppressor macrophage

value: primary cell

value: adult

value: 40 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS167OKP at ENCODE; https://www.encodeproject.org/ENCBS167OKP/

value: Derived from ENCODE donor ENCDO661IWU; https://www.encodeproject.org/ENCDO661IWU/


title: DNase-seq from heart left ventricle (ENCLB652THU)

description:
https://www.encodeproject.org/experiments/ENCSR946DXB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR946DXB
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2018-01-29
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB652THU
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens heart left ventricle tissue female fetal (101 day)

value: heart left ventricle

value: tissue

value: fetal

value: female

value: 101 day

value: ENCBS931FTX at ENCODE; https://www.encodeproject.org/ENCBS931FTX/

value: Derived from ENCODE donor ENCDO060OTP; https://www.encodeproject.org/ENCDO060OTP/


title: DNase-seq from suppressor macrophage (ENCLB040XRV)

description:
https://www.encodeproject.org/experiments/ENCSR371CCL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR371CCL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB040XRV
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (21 years) suppressor macrophage primary cell

value: male

value: 21 year

value: ENCBS012PFZ at ENCODE; https://www.encodeproject.org/ENCBS012PFZ/

value: Derived from ENCODE donor ENCDO733YAB; https://www.encodeproject.org/ENCDO733YAB/


title: TF ChIP-seq from HepG2 (ENCLB664XHY)

description:
https://www.encodeproject.org/experiments/ENCSR872ZHM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR872ZHM
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR055XHN
encode release date: 2018-03-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB664XHY
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 8
nucleic acid starting quantity units: ng

value: cell line

value: Hep G2 (Hepatocellular carcinoma, human) Hep G2 is a perpetual cell line which was derived from the liver tissue of a 15-year-old Caucasian American male with a well-differentiated hepatocellular carcinoma. These cells are epithelial in morphology, have a model chromosome number of 55, and are not tumorigenic in nude mice.

value: hepatocellular carcinoma

value: child

value: 15 year

value: Bradley Bernstein, Broad

value: ATCC

value: ENCBS127GXY at ENCODE; https://www.encodeproject.org/ENCBS127GXY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB941EZN)

description:
https://www.encodeproject.org/experiments/ENCSR376FMN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR376FMN
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR055XHN
encode release date: 2017-08-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB941EZN
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 8
nucleic acid starting quantity units: ng

source_name: Homo sapiens HepG2 immortalized cell line

value: ENCBS011BYX at ENCODE; https://www.encodeproject.org/ENCBS011BYX/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from tibial nerve (ENCLB612TAV)

description:
https://www.encodeproject.org/experiments/ENCSR875NEW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR875NEW
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR154SJE
encode release date: 2019-09-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB612TAV
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens tibial nerve tissue female adult (53 years)

value: CTCF

value: tibial nerve

value: tissue

value: EnTEX:Nerve - Tibial

value: adult

value: 53 year

value: female

value: ENCBS248LIK at ENCODE; https://www.encodeproject.org/ENCBS248LIK/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: TF ChIP-seq from gastrocnemius medialis (ENCLB341VGV)

description:
https://www.encodeproject.org/experiments/ENCSR355ALW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR355ALW
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR138WRC
encode release date: 2019-09-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB341VGV
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (51 years) gastrocnemius medialis tissue

value: gastrocnemius medialis

value: i.e. REMC 6, 13, 14 and 15; EnTEX:Muscle - Skeletal also gastrocnemius medialis

value: 51 year

value: Kristin Ardlie

value: ENCBS731GTN at ENCODE; https://www.encodeproject.org/ENCBS731GTN/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: TF ChIP-seq from HepG2 (ENCLB695CSO)

description:
https://www.encodeproject.org/experiments/ENCSR362CPB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR362CPB
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR055XHN
encode release date: 2017-07-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB695CSO
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 3
nucleic acid starting quantity units: ng

value: cell line

value: Hep G2 (Hepatocellular carcinoma, human) Hep G2 is a perpetual cell line which was derived from the liver tissue of a 15-year-old Caucasian American male with a well-differentiated hepatocellular carcinoma. These cells are epithelial in morphology, have a model chromosome number of 55, and are not tumorigenic in nude mice.

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Bradley Bernstein, Broad

value: ATCC

value: ENCBS127GXY at ENCODE; https://www.encodeproject.org/ENCBS127GXY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from brain (ENCLB659FTZ)

description:
https://www.encodeproject.org/experiments/ENCSR507GFJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR507GFJ
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2018-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB659FTZ
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens embryo (80 days) brain tissue

value: brain

value: tissue

value: not collected

value: embryonic

value: 80 day

value: John Stamatoyannopoulos, UW

value: BDRL

value: ENCBS694XIX at ENCODE; https://www.encodeproject.org/ENCBS694XIX/

value: Derived from ENCODE donor ENCDO662IIE; https://www.encodeproject.org/ENCDO662IIE/


title: TF ChIP-seq from gastrocnemius medialis (ENCLB541XAX)

description:
https://www.encodeproject.org/experiments/ENCSR355ALW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR355ALW
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR138WRC
encode release date: 2019-09-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB541XAX
fragmentation methods: sonication (generic)
size range: 200-600

value: CTCF

value: gastrocnemius medialis

value: i.e. REMC 6, 13, 14 and 15; EnTEX:Muscle - Skeletal also gastrocnemius medialis\n

value: female

value: adult

value: 51 year

value: Kristin Ardlie

value: ENCBS640TBC at ENCODE; https://www.encodeproject.org/ENCBS640TBC/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ATAC-seq from cerebellum (ENCLB028LZH)

status: Public on Mar 29 2021

description:
https://www.encodeproject.org/experiments/ENCSR802GEV/
***************
biological replicate number: 1
technical replicate number: 1
description: human UMB4727 cerebellum
experiment encode accession: ENCSR802GEV
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2017-10-09
lab: Barbara Wold, Caltech
library encode accession: ENCLB028LZH
fragmentation methods: chemical (Nextera tagmentation)

source_name: Homo sapiens male adult (20 years) cerebellum tissue

value: cerebellum

value: tissue

value: cerebellum from 1 20 y.o. human male

value: male

value: normal

value: 20 year

value: Barbara Wold, Caltech

value: Barbara Wold

value: ENCBS726RZP at ENCODE; https://www.encodeproject.org/ENCBS726RZP/

value: Derived from ENCODE donor ENCDO377OGA; https://www.encodeproject.org/ENCDO377OGA/


title: TF ChIP-seq from HepG2 (ENCLB715WYR)

description:
https://www.encodeproject.org/experiments/ENCSR872ZHM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR872ZHM
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR055XHN
encode release date: 2018-03-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB715WYR
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 25
nucleic acid starting quantity units: ng

value: cell line

value: Hep G2 (Hepatocellular carcinoma, human) Hep G2 is a perpetual cell line which was derived from the liver tissue of a 15-year-old Caucasian American male with a well-differentiated hepatocellular carcinoma. These cells are epithelial in morphology, have a model chromosome number of 55, and are not tumorigenic in nude mice.

value: Bradley Bernstein, Broad

value: hepatocellular carcinoma

value: 15 year

value: child

value: ENCBS011BYX at ENCODE; https://www.encodeproject.org/ENCBS011BYX/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from SK-N-MC (ENCLB598TRK)

description:
https://www.encodeproject.org/experiments/ENCSR113GDB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against EZH2 using SK-N-MC cell line which was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (www.ncbi.nlm.nih.gov/pubmed/15548687, www.ncbi.nlm.nih.gov/pubmed/25453903, www.ncbi.nlm.nih.gov/biosample/3151999).
experiment encode accession: ENCSR113GDB
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR899XXQ
encode release date: 2017-12-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB598TRK
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 23
nucleic acid starting quantity units: ng

source_name: Homo sapiens SK-N-MC immortalized cell line

value: SK-N-MC

value: Please note:This cell line was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (http://www.ncbi.nlm.nih.gov/pubmed/15548687, http://www.ncbi.nlm.nih.gov/biosample/3151999,http://www.ncbi.nlm.nih.gov/pubmed/25453903)

value: female

value: 14 year

value: Ewing's sarcoma

value: ENCBS273LIC at ENCODE; https://www.encodeproject.org/ENCBS273LIC/

value: Derived from ENCODE donor ENCDO000ABC; https://www.encodeproject.org/ENCDO000ABC/


title: TF ChIP-seq from HepG2 (ENCLB590SBO)

description:
https://www.encodeproject.org/experiments/ENCSR487LUQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR487LUQ
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR055XHN
encode release date: 2018-03-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB590SBO
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 16
nucleic acid starting quantity units: ng

value: male


title: TF ChIP-seq from HepG2 (ENCLB877TCQ)

description:
https://www.encodeproject.org/experiments/ENCSR849FVL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR849FVL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR770PLF
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB877TCQ
fragmentation methods: sonication (generic)

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS422LZD at ENCODE; https://www.encodeproject.org/ENCBS422LZD/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB942FFI)

description:
https://www.encodeproject.org/experiments/ENCSR277VIC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR277VIC
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR055XHN
encode release date: 2017-12-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB942FFI
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 17
nucleic acid starting quantity units: ng

value: cell line

value: Hep G2 (Hepatocellular carcinoma, human) Hep G2 is a perpetual cell line which was derived from the liver tissue of a 15-year-old Caucasian American male with a well-differentiated hepatocellular carcinoma. These cells are epithelial in morphology, have a model chromosome number of 55, and are not tumorigenic in nude mice.

value: Bradley Bernstein, Broad

value: hepatocellular carcinoma


title: TF ChIP-seq from HepG2 (ENCLB724DQJ)

description:
https://www.encodeproject.org/experiments/ENCSR362CPB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR362CPB
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR055XHN
encode release date: 2017-07-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB724DQJ
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 2
nucleic acid starting quantity units: ng

value: 15 year

value: child

value: ENCBS011BYX at ENCODE; https://www.encodeproject.org/ENCBS011BYX/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from SU-DHL-6 (ENCLB922JKH)

description:
https://www.encodeproject.org/experiments/ENCSR088HZI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR088HZI
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR179YLS
encode release date: 2018-02-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB922JKH
fragmentation methods: shearing (Covaris generic)
size range: 200-600

source_name: Homo sapiens SUDHL6 immortalized cell line

value: also called SU-DHL-6 (diffuse histiocytic lymphoma) - disease:large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma; ATCC CRL-2959

value: 43 year

value: adult

value: ENCBS401ZBX at ENCODE; https://www.encodeproject.org/ENCBS401ZBX/

value: Derived from ENCODE donor ENCDO353AAA; https://www.encodeproject.org/ENCDO353AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_2206; http://web.expasy.org/cellosaurus/CVCL_2206


title: TF ChIP-seq from HepG2 (ENCLB656ZIM)

description:
https://www.encodeproject.org/experiments/ENCSR277VIC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR277VIC
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR055XHN
encode release date: 2017-12-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB656ZIM
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 5
nucleic acid starting quantity units: ng

value: male

value: ATCC

value: ENCBS127GXY at ENCODE; https://www.encodeproject.org/ENCBS127GXY/


title: TF ChIP-seq from HepG2 (ENCLB523FFP)

description:
https://www.encodeproject.org/experiments/ENCSR801GJU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR801GJU
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR055XHN
encode release date: 2018-02-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB523FFP
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 9
nucleic acid starting quantity units: ng

value: cell line


title: DNase-seq from T-cell (ENCLB553NDF)

description:
https://www.encodeproject.org/experiments/ENCSR111LTT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR111LTT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB553NDF

source_name: Homo sapiens male adult (55 years) T-cell primary cell

value: T-cell

value: primary cell

value: 55 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS344VNC at ENCODE; https://www.encodeproject.org/ENCBS344VNC/

value: Derived from ENCODE donor ENCDO413JVE; https://www.encodeproject.org/ENCDO413JVE/


title: ATAC-seq from posterior cingulate cortex (ENCLB073DLE)

description:
https://www.encodeproject.org/experiments/ENCSR729FNL/
***************
biological replicate number: 1
technical replicate number: 1
description: human UMB4727 posterior cingulate cortex
experiment encode accession: ENCSR729FNL
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2017-10-09
lab: Barbara Wold, Caltech
library encode accession: ENCLB073DLE
fragmentation methods: chemical (Nextera tagmentation)

source_name: Homo sapiens male adult (20 years) posterior cingulate cortex tissue

value: posterior cingulate cortex

value: tissue

value: posterior cingulate cortex from 1 20 year old human male

value: normal

value: 20 year

value: Barbara Wold, Caltech

value: Barbara Wold

value: ENCBS502CUQ at ENCODE; https://www.encodeproject.org/ENCBS502CUQ/

value: Derived from ENCODE donor ENCDO377OGA; https://www.encodeproject.org/ENCDO377OGA/


title: TF ChIP-seq from K562 (ENCLB602CBX)

description:
https://www.encodeproject.org/experiments/ENCSR110JLQ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF778 ChIP-seq on human K562
experiment encode accession: ENCSR110JLQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR956GFH, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB602CBX
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF778

value: cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF778.

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS775UJP at ENCODE; https://www.encodeproject.org/ENCBS775UJP/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from posterior cingulate gyrus (ENCLB217AWT)

description:
https://www.encodeproject.org/experiments/ENCSR846VGZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR846VGZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-01-12
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB217AWT

source_name: Homo sapiens female adult (90 or above years) posterior cingulate gyrus tissue

value: posterior cingulate gyrus

value: tissue

value: 90 year or above

value: John Stamatoyannopoulos, UW

value: Rush University

value: ENCBS670FXV at ENCODE; https://www.encodeproject.org/ENCBS670FXV/

value: Derived from ENCODE donor ENCDO921LXT; https://www.encodeproject.org/ENCDO921LXT/


title: TF ChIP-seq from HepG2 (ENCLB881JVQ)

description:
https://www.encodeproject.org/experiments/ENCSR419KSZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR419KSZ
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR055XHN
encode release date: 2017-03-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB881JVQ
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 9
nucleic acid starting quantity units: ng

value: cell line

value: Hep G2 (Hepatocellular carcinoma, human) Hep G2 is a perpetual cell line which was derived from the liver tissue of a 15-year-old Caucasian American male with a well-differentiated hepatocellular carcinoma. These cells are epithelial in morphology, have a model chromosome number of 55, and are not tumorigenic in nude mice.

value: male

value: Bradley Bernstein, Broad

value: hepatocellular carcinoma

value: 15 year

value: child

value: ENCBS011BYX at ENCODE; https://www.encodeproject.org/ENCBS011BYX/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB921TSD)

description:
https://www.encodeproject.org/experiments/ENCSR419KSZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR419KSZ
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR055XHN
encode release date: 2017-03-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB921TSD
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 3
nucleic acid starting quantity units: ng

value: ATCC

value: ENCBS127GXY at ENCODE; https://www.encodeproject.org/ENCBS127GXY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB241EHP)

description:
https://www.encodeproject.org/experiments/ENCSR801GJU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR801GJU
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR055XHN
encode release date: 2018-02-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB241EHP
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 5
nucleic acid starting quantity units: ng


title: TF ChIP-seq from K562 (ENCLB149WVL)

description:
https://www.encodeproject.org/experiments/ENCSR110JLQ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF778 ChIP-seq on human K562
experiment encode accession: ENCSR110JLQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR956GFH, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB149WVL
size range: 450-650

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF778.

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS932SKF at ENCODE; https://www.encodeproject.org/ENCBS932SKF/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from SU-DHL-6 (ENCLB648QHS)

description:
https://www.encodeproject.org/experiments/ENCSR088HZI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR088HZI
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR179YLS
encode release date: 2018-02-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB648QHS
fragmentation methods: sonication (generic)
size range: 200-600

value: cell line

value: also called SU-DHL-6 (diffuse histiocytic lymphoma) - disease:large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma; ATCC CRL-2959

value: 43 year

value: male

value: Bradley Bernstein, Broad

value: ENCBS107PVI at ENCODE; https://www.encodeproject.org/ENCBS107PVI/

value: Derived from ENCODE donor ENCDO353AAA; https://www.encodeproject.org/ENCDO353AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_2206; http://web.expasy.org/cellosaurus/CVCL_2206


title: TF ChIP-seq from Loucy (ENCLB352TPE)

description:
https://www.encodeproject.org/experiments/ENCSR783QUL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR783QUL
assay title: TF ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR648HLP
encode release date: 2018-02-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB352TPE
fragmentation methods: none
size range: 200-600
nucleic acid starting quantity: 2
nucleic acid starting quantity units: ng

source_name: Homo sapiens Loucy immortalized cell line

value: Loucy

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: ENCBS708EFA at ENCODE; https://www.encodeproject.org/ENCBS708EFA/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: DNase-seq from HCEC 1CT (ENCLB374SOK)

description:
https://www.encodeproject.org/experiments/ENCSR038XTK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR038XTK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2017-12-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB374SOK

source_name: Homo sapiens HCEC 1CT cell line

value: HCEC 1CT

value: not collected

value: unknown

value: John Stamatoyannopoulos, UW

value: Unknown Source

value: ENCBS573VIG at ENCODE; https://www.encodeproject.org/ENCBS573VIG/

value: Derived from ENCODE donor ENCDO336HXJ; https://www.encodeproject.org/ENCDO336HXJ/


title: DNase-seq from HCEC 1CT (ENCLB093AAI)

description:
https://www.encodeproject.org/experiments/ENCSR038XTK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR038XTK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2017-12-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB093AAI
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: cell line

value: ENCBS654NDM at ENCODE; https://www.encodeproject.org/ENCBS654NDM/


title: TF ChIP-seq from K562 (ENCLB969PEV)

description:
https://www.encodeproject.org/experiments/ENCSR844MAB/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF77 ChIP-seq on human K562
experiment encode accession: ENCSR844MAB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR322WTB, ENCSR426BBS
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB969PEV
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF77

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: ATCC

value: ENCBS501WDZ at ENCODE; https://www.encodeproject.org/ENCBS501WDZ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB182XZE)

description:
https://www.encodeproject.org/experiments/ENCSR844MAB/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF77 ChIP-seq on human K562
experiment encode accession: ENCSR844MAB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR322WTB, ENCSR426BBS
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB182XZE
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: ENCBS600DNA at ENCODE; https://www.encodeproject.org/ENCBS600DNA/


title: DNase-seq from inflammatory macrophage (ENCLB847HOO)

description:
https://www.encodeproject.org/experiments/ENCSR721XAP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR721XAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB847HOO
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (21 years) inflammatory macrophage primary cell

value: inflammatory macrophage

value: primary cell

value: male

value: 21 year

value: Shelly Heimfeld

value: ENCBS298AWT at ENCODE; https://www.encodeproject.org/ENCBS298AWT/

value: Derived from ENCODE donor ENCDO733YAB; https://www.encodeproject.org/ENCDO733YAB/