title: TF ChIP-seq from HepG2 (ENCLB862FQJ)

description:
https://www.encodeproject.org/experiments/ENCSR042BQZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR042BQZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB862FQJ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting SMAD9

value: ENCBS329USQ at ENCODE; https://www.encodeproject.org/ENCBS329USQ/


title: TF ChIP-seq from HepG2 (ENCLB666USN)

status: Public on Mar 29 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR759KXQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR759KXQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB666USN
fragmentation methods: sonication (generic)

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF337

tag: antibody

tag: line

value: cell line

tag: biosample encode accession

tag: Sex

value: male

tag: health state

value: hepatocellular carcinoma

tag: dev stage

value: child

tag: age

value: 15 year

tag: lab

value: Richard Myers, HAIB

tag: source

value: Richard Myers

tag: link

value: ENCBS807DFA at ENCODE; https://www.encodeproject.org/ENCBS807DFA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: DNase-seq from suppressor macrophage (ENCLB001JXV)

description:
https://www.encodeproject.org/experiments/ENCSR711AQM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR711AQM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB001JXV
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500

source_name: Homo sapiens male adult (21 years) suppressor macrophage primary cell

value: suppressor macrophage

value: primary cell

tag: description

value: adult

value: 21 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS927WMG at ENCODE; https://www.encodeproject.org/ENCBS927WMG/

value: Derived from ENCODE donor ENCDO733YAB; https://www.encodeproject.org/ENCDO733YAB/


title: TF ChIP-seq from HepG2 (ENCLB386HOW)

description:
https://www.encodeproject.org/experiments/ENCSR251XFX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR251XFX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB386HOW
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting DMTF1

value: cell line

value: ENCBS584ZQB at ENCODE; https://www.encodeproject.org/ENCBS584ZQB/


title: TF ChIP-seq from HepG2 (ENCLB732YMT)

description:
https://www.encodeproject.org/experiments/ENCSR436PIH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR436PIH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB732YMT
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF483

value: male

value: hepatocellular carcinoma

value: ENCBS255GNT at ENCODE; https://www.encodeproject.org/ENCBS255GNT/


title: TF ChIP-seq from HepG2 (ENCLB234FKS)

description:
https://www.encodeproject.org/experiments/ENCSR717QSS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR717QSS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB234FKS
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ELK1

value: child

value: 15 year

value: Richard Myers, HAIB

value: ENCBS017HIM at ENCODE; https://www.encodeproject.org/ENCBS017HIM/


title: TF ChIP-seq from HepG2 (ENCLB889HIA)

description:
https://www.encodeproject.org/experiments/ENCSR248WAU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR248WAU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB889HIA
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF772

value: Richard Myers

value: ENCBS280WDJ at ENCODE; https://www.encodeproject.org/ENCBS280WDJ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB592VOI)

description:
https://www.encodeproject.org/experiments/ENCSR251XFX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR251XFX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB592VOI
fragmentation methods: sonication (generic)

value: ENCBS548RKG at ENCODE; https://www.encodeproject.org/ENCBS548RKG/


title: TF ChIP-seq from HepG2 (ENCLB847IPE)

description:
https://www.encodeproject.org/experiments/ENCSR042BQZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR042BQZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB847IPE
fragmentation methods: sonication (generic)

value: ENCBS472FUC at ENCODE; https://www.encodeproject.org/ENCBS472FUC/


title: TF ChIP-seq from HepG2 (ENCLB393JAS)

description:
https://www.encodeproject.org/experiments/ENCSR757HBB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR757HBB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR479INP
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB393JAS
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting SFPQ

value: SFPQ

value: ENCBS925VMN at ENCODE; https://www.encodeproject.org/ENCBS925VMN/


title: TF ChIP-seq from K562 (ENCLB331QMX)

description:
https://www.encodeproject.org/experiments/ENCSR041YBR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR041YBR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR953NJZ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB331QMX
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF12

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS341VGY at ENCODE; https://www.encodeproject.org/ENCBS341VGY/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB928QKL)

description:
https://www.encodeproject.org/experiments/ENCSR403MJY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR403MJY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB928QKL
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF281

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: ENCBS746BJB at ENCODE; https://www.encodeproject.org/ENCBS746BJB/


title: TF ChIP-seq from HepG2 (ENCLB811OCZ)

description:
https://www.encodeproject.org/experiments/ENCSR248WAU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR248WAU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB811OCZ
fragmentation methods: sonication (generic)

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS853HIB at ENCODE; https://www.encodeproject.org/ENCBS853HIB/


title: TF ChIP-seq from K562 (ENCLB137ELP)

description:
https://www.encodeproject.org/experiments/ENCSR041YBR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR041YBR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR953NJZ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB137ELP
fragmentation methods: sonication (generic)

value: ENCBS385JIW at ENCODE; https://www.encodeproject.org/ENCBS385JIW/


title: TF ChIP-seq from HepG2 (ENCLB222IBG)

description:
https://www.encodeproject.org/experiments/ENCSR436RQS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR436RQS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB222IBG
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF577

value: ENCBS692AGN at ENCODE; https://www.encodeproject.org/ENCBS692AGN/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB189JUP)

description:
https://www.encodeproject.org/experiments/ENCSR436RQS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR436RQS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB189JUP
fragmentation methods: sonication (generic)

value: ENCBS073UEZ at ENCODE; https://www.encodeproject.org/ENCBS073UEZ/


title: TF ChIP-seq from HepG2 (ENCLB108MRD)

description:
https://www.encodeproject.org/experiments/ENCSR011INW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR011INW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB108MRD
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting PRDM15

value: ENCBS491JGD at ENCODE; https://www.encodeproject.org/ENCBS491JGD/


title: TF ChIP-seq from HepG2 (ENCLB539IZN)

description:
https://www.encodeproject.org/experiments/ENCSR005GZH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR005GZH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB539IZN
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting SMAD3

value: ENCBS315VCZ at ENCODE; https://www.encodeproject.org/ENCBS315VCZ/


title: TF ChIP-seq from HepG2 (ENCLB117PKE)

description:
https://www.encodeproject.org/experiments/ENCSR759KXQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR759KXQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB117PKE
fragmentation methods: sonication (generic)

value: ENCBS868AWU at ENCODE; https://www.encodeproject.org/ENCBS868AWU/


title: TF ChIP-seq from HepG2 (ENCLB152EOQ)

description:
https://www.encodeproject.org/experiments/ENCSR434ZNS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR434ZNS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR776XHE
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB152EOQ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting WIZ

value: WIZ

value: ENCBS904ULU at ENCODE; https://www.encodeproject.org/ENCBS904ULU/


title: TF ChIP-seq from HepG2 (ENCLB981FXA)

description:
https://www.encodeproject.org/experiments/ENCSR005GZH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR005GZH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB981FXA
fragmentation methods: sonication (generic)

value: cell line

value: male

value: ENCBS176AIH at ENCODE; https://www.encodeproject.org/ENCBS176AIH/


title: TF ChIP-seq from HepG2 (ENCLB683PVX)

description:
https://www.encodeproject.org/experiments/ENCSR436PIH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR436PIH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB683PVX
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: child

value: ENCBS195GCK at ENCODE; https://www.encodeproject.org/ENCBS195GCK/


title: TF ChIP-seq from HepG2 (ENCLB776HNP)

description:
https://www.encodeproject.org/experiments/ENCSR756UNW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR756UNW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB776HNP
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF548

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS681ITS at ENCODE; https://www.encodeproject.org/ENCBS681ITS/


title: TF ChIP-seq from HepG2 (ENCLB703ZNI)

description:
https://www.encodeproject.org/experiments/ENCSR434ZNS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR434ZNS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR776XHE
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB703ZNI
fragmentation methods: sonication (generic)

value: ENCBS947XDD at ENCODE; https://www.encodeproject.org/ENCBS947XDD/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB169KUO)

description:
https://www.encodeproject.org/experiments/ENCSR403MJY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR403MJY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB169KUO
fragmentation methods: sonication (generic)

value: ENCBS134EYT at ENCODE; https://www.encodeproject.org/ENCBS134EYT/


title: TF ChIP-seq from HepG2 (ENCLB183FQJ)

description:
https://www.encodeproject.org/experiments/ENCSR402ZCY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR402ZCY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB183FQJ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ATF3

value: ENCBS522TGG at ENCODE; https://www.encodeproject.org/ENCBS522TGG/


title: TF ChIP-seq from HepG2 (ENCLB172OBK)

description:
https://www.encodeproject.org/experiments/ENCSR757HBB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR757HBB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR479INP
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB172OBK
fragmentation methods: sonication (generic)

value: SFPQ

value: ENCBS684ZEX at ENCODE; https://www.encodeproject.org/ENCBS684ZEX/


title: TF ChIP-seq from HepG2 (ENCLB038CRB)

description:
https://www.encodeproject.org/experiments/ENCSR750OWO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR750OWO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR356LLA
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB038CRB
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting HDAC1

value: ENCBS449OCN at ENCODE; https://www.encodeproject.org/ENCBS449OCN/


title: TF ChIP-seq from HepG2 (ENCLB821PNC)

description:
https://www.encodeproject.org/experiments/ENCSR700USV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR700USV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB821PNC
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting LRRFIP1

value: cell line

value: ENCBS943XQS at ENCODE; https://www.encodeproject.org/ENCBS943XQS/


title: TF ChIP-seq from HepG2 (ENCLB551NYT)

description:
https://www.encodeproject.org/experiments/ENCSR756UNW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR756UNW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB551NYT
fragmentation methods: sonication (generic)

value: male

value: ENCBS895MVY at ENCODE; https://www.encodeproject.org/ENCBS895MVY/


title: TF ChIP-seq from HepG2 (ENCLB319AAY)

description:
https://www.encodeproject.org/experiments/ENCSR747VUU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR747VUU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB319AAY
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting JUN

value: JUN

value: hepatocellular carcinoma

value: child

value: ENCBS931MET at ENCODE; https://www.encodeproject.org/ENCBS931MET/


title: TF ChIP-seq from HepG2 (ENCLB410LRG)

description:
https://www.encodeproject.org/experiments/ENCSR428LOB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR428LOB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB410LRG
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZZZ3

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS887ZRL at ENCODE; https://www.encodeproject.org/ENCBS887ZRL/


title: TF ChIP-seq from HepG2 (ENCLB499BLN)

description:
https://www.encodeproject.org/experiments/ENCSR428LOB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR428LOB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB499BLN
fragmentation methods: sonication (generic)

value: ENCBS100CIN at ENCODE; https://www.encodeproject.org/ENCBS100CIN/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB532JYQ)

description:
https://www.encodeproject.org/experiments/ENCSR747VUU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR747VUU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB532JYQ
fragmentation methods: sonication (generic)

value: ENCBS911IMY at ENCODE; https://www.encodeproject.org/ENCBS911IMY/


title: TF ChIP-seq from HepG2 (ENCLB389NPB)

description:
https://www.encodeproject.org/experiments/ENCSR039CUX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR039CUX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB389NPB
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting PLSCR1

value: ENCBS152NPJ at ENCODE; https://www.encodeproject.org/ENCBS152NPJ/


title: TF ChIP-seq from HepG2 (ENCLB952KYC)

description:
https://www.encodeproject.org/experiments/ENCSR701WPG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR701WPG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB952KYC
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF800

value: ENCBS783GOG at ENCODE; https://www.encodeproject.org/ENCBS783GOG/


title: TF ChIP-seq from HepG2 (ENCLB199RRL)

description:
https://www.encodeproject.org/experiments/ENCSR402ZCY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR402ZCY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB199RRL
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS190SFU at ENCODE; https://www.encodeproject.org/ENCBS190SFU/


title: TF ChIP-seq from HepG2 (ENCLB449JFD)

description:
https://www.encodeproject.org/experiments/ENCSR039CUX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR039CUX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB449JFD
fragmentation methods: sonication (generic)

value: male

value: ENCBS062SII at ENCODE; https://www.encodeproject.org/ENCBS062SII/


title: TF ChIP-seq from HepG2 (ENCLB883KIG)

description:
https://www.encodeproject.org/experiments/ENCSR036RHV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR036RHV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR776XHE
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB883KIG
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting SAFB2

value: ENCBS119VNW at ENCODE; https://www.encodeproject.org/ENCBS119VNW/


title: TF ChIP-seq from HepG2 (ENCLB348AJU)

description:
https://www.encodeproject.org/experiments/ENCSR756SZU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR756SZU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB348AJU
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting KLF13

value: hepatocellular carcinoma

value: ENCBS150TYB at ENCODE; https://www.encodeproject.org/ENCBS150TYB/


title: TF ChIP-seq from HepG2 (ENCLB769FAO)

description:
https://www.encodeproject.org/experiments/ENCSR233FJO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR233FJO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR524BHN
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB769FAO
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF280D

value: child

value: ENCBS988CXK at ENCODE; https://www.encodeproject.org/ENCBS988CXK/


title: TF ChIP-seq from HepG2 (ENCLB326HXX)

description:
https://www.encodeproject.org/experiments/ENCSR756SZU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR756SZU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB326HXX
fragmentation methods: sonication (generic)

value: 15 year

value: Richard Myers, HAIB

value: ENCBS726ZAK at ENCODE; https://www.encodeproject.org/ENCBS726ZAK/


title: TF ChIP-seq from HepG2 (ENCLB741XMK)

description:
https://www.encodeproject.org/experiments/ENCSR701WPG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR701WPG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB741XMK
fragmentation methods: sonication (generic)

value: Richard Myers

value: ENCBS793PUZ at ENCODE; https://www.encodeproject.org/ENCBS793PUZ/


title: TF ChIP-seq from K562 (ENCLB805LNF)

description:
https://www.encodeproject.org/experiments/ENCSR454SCH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR454SCH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR953NJZ
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB805LNF
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF7

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS139SLH at ENCODE; https://www.encodeproject.org/ENCBS139SLH/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB843MGY)

description:
https://www.encodeproject.org/experiments/ENCSR036RHV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR036RHV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR776XHE
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB843MGY
fragmentation methods: sonication (generic)

value: cell line

value: male

value: ENCBS176FIM at ENCODE; https://www.encodeproject.org/ENCBS176FIM/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB521ECX)

description:
https://www.encodeproject.org/experiments/ENCSR232AAR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR232AAR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR856RWG
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB521ECX
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZBTB42

value: hepatocellular carcinoma

value: child

value: ENCBS495MWC at ENCODE; https://www.encodeproject.org/ENCBS495MWC/


title: TF ChIP-seq from HepG2 (ENCLB399DGC)

description:
https://www.encodeproject.org/experiments/ENCSR700USV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR700USV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB399DGC
fragmentation methods: sonication (generic)

value: 15 year

value: Richard Myers, HAIB

value: ENCBS146OVY at ENCODE; https://www.encodeproject.org/ENCBS146OVY/


title: TF ChIP-seq from HepG2 (ENCLB610BUO)

description:
https://www.encodeproject.org/experiments/ENCSR735VJE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR735VJE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR388OQM
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB610BUO
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting LBX2

value: Richard Myers

value: ENCBS944OWG at ENCODE; https://www.encodeproject.org/ENCBS944OWG/


title: TF ChIP-seq from HepG2 (ENCLB020VCB)

description:
https://www.encodeproject.org/experiments/ENCSR750OWO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR750OWO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR356LLA
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB020VCB
fragmentation methods: sonication (generic)

value: ENCBS457ZEJ at ENCODE; https://www.encodeproject.org/ENCBS457ZEJ/


title: ATAC-seq from A549 (ENCLB605LCC)

description:
https://www.encodeproject.org/experiments/ENCSR032RGS/
***************
biological replicate number: 3
technical replicate number: 1
description: ATAC-seq on human cell line A549
experiment encode accession: ENCSR032RGS
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB605LCC
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens A549 cell line

value: adult

value: 58 year

value: Michael Snyder, Stanford

value: ATCC

value: ENCBS003HWJ at ENCODE; https://www.encodeproject.org/ENCBS003HWJ/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ATAC-seq from A549 (ENCLB817BKI)

description:
https://www.encodeproject.org/experiments/ENCSR032RGS/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line A549
experiment encode accession: ENCSR032RGS
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB817BKI
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: cell line

value: male

value: ENCBS049MEE at ENCODE; https://www.encodeproject.org/ENCBS049MEE/


title: ATAC-seq from A549 (ENCLB404SKN)

description:
https://www.encodeproject.org/experiments/ENCSR032RGS/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line A549
experiment encode accession: ENCSR032RGS
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-08-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB404SKN
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: ENCBS024PJA at ENCODE; https://www.encodeproject.org/ENCBS024PJA/


title: TF ChIP-seq from HepG2 (ENCLB385CYP)

description:
https://www.encodeproject.org/experiments/ENCSR734CRN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR734CRN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB385CYP
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZC3H8

value: hepatocellular carcinoma

value: child

value: ENCBS127WHN at ENCODE; https://www.encodeproject.org/ENCBS127WHN/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB025OMR)

description:
https://www.encodeproject.org/experiments/ENCSR422VAG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR422VAG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB025OMR
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZSCAN29

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS249AAX at ENCODE; https://www.encodeproject.org/ENCBS249AAX/


title: TF ChIP-seq from HepG2 (ENCLB188SAZ)

description:
https://www.encodeproject.org/experiments/ENCSR233FJO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR233FJO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR524BHN
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB188SAZ
fragmentation methods: sonication (generic)

value: ENCBS332WIJ at ENCODE; https://www.encodeproject.org/ENCBS332WIJ/


title: TF ChIP-seq from HepG2 (ENCLB227JQV)

description:
https://www.encodeproject.org/experiments/ENCSR731UPJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR731UPJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB227JQV
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZFP41

value: ENCBS399CKL at ENCODE; https://www.encodeproject.org/ENCBS399CKL/


title: TF ChIP-seq from HepG2 (ENCLB592XML)

description:
https://www.encodeproject.org/experiments/ENCSR032LZZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR032LZZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB592XML
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF362

value: ENCBS776AND at ENCODE; https://www.encodeproject.org/ENCBS776AND/


title: TF ChIP-seq from HepG2 (ENCLB968UJS)

description:
https://www.encodeproject.org/experiments/ENCSR731LZB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR731LZB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB968UJS
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF788

value: ENCBS039WJG at ENCODE; https://www.encodeproject.org/ENCBS039WJG/


title: TF ChIP-seq from HepG2 (ENCLB666RAG)

description:
https://www.encodeproject.org/experiments/ENCSR422VAG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR422VAG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB666RAG
fragmentation methods: sonication (generic)

value: ENCBS939ACP at ENCODE; https://www.encodeproject.org/ENCBS939ACP/


title: TF ChIP-seq from HepG2 (ENCLB254OXH)

description:
https://www.encodeproject.org/experiments/ENCSR731UPJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR731UPJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB254OXH
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS718MUP at ENCODE; https://www.encodeproject.org/ENCBS718MUP/


title: TF ChIP-seq from HepG2 (ENCLB161NKG)

description:
https://www.encodeproject.org/experiments/ENCSR232AAR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR232AAR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR856RWG
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB161NKG
fragmentation methods: sonication (generic)

value: male

value: ENCBS476FTF at ENCODE; https://www.encodeproject.org/ENCBS476FTF/


title: TF ChIP-seq from HepG2 (ENCLB314LNL)

description:
https://www.encodeproject.org/experiments/ENCSR734CRN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR734CRN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB314LNL
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: ENCBS196FPH at ENCODE; https://www.encodeproject.org/ENCBS196FPH/


title: TF ChIP-seq from HepG2 (ENCLB718CUW)

description:
https://www.encodeproject.org/experiments/ENCSR731LZB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR731LZB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB718CUW
fragmentation methods: sonication (generic)

value: child

value: ENCBS049RFY at ENCODE; https://www.encodeproject.org/ENCBS049RFY/


title: TF ChIP-seq from HepG2 (ENCLB015MZE)

description:
https://www.encodeproject.org/experiments/ENCSR026GSW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR026GSW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR, ENCSR019ZGX
encode release date: 2020-10-22
lab: Richard Myers, HAIB
library encode accession: ENCLB015MZE
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting EGR1

value: 15 year

value: ENCBS313UES at ENCODE; https://www.encodeproject.org/ENCBS313UES/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB186LUK)

description:
https://www.encodeproject.org/experiments/ENCSR228ZYW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR228ZYW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB186LUK
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting STAT6

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS090LNN at ENCODE; https://www.encodeproject.org/ENCBS090LNN/


title: TF ChIP-seq from HepG2 (ENCLB516QDW)

description:
https://www.encodeproject.org/experiments/ENCSR032LZZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR032LZZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB516QDW
fragmentation methods: sonication (generic)

value: ENCBS166MGZ at ENCODE; https://www.encodeproject.org/ENCBS166MGZ/


title: TF ChIP-seq from HepG2 (ENCLB675ZUD)

description:
https://www.encodeproject.org/experiments/ENCSR026GSW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR026GSW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR, ENCSR019ZGX
encode release date: 2020-10-22
lab: Richard Myers, HAIB
library encode accession: ENCLB675ZUD
fragmentation methods: sonication (generic)

value: ENCBS064TLU at ENCODE; https://www.encodeproject.org/ENCBS064TLU/


title: TF ChIP-seq from HepG2 (ENCLB929IGH)

description:
https://www.encodeproject.org/experiments/ENCSR025EXJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR025EXJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR776XHE
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB929IGH
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting IRF5

value: ENCBS692ALK at ENCODE; https://www.encodeproject.org/ENCBS692ALK/


title: TF ChIP-seq from HepG2 (ENCLB707BQA)

description:
https://www.encodeproject.org/experiments/ENCSR025EXJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR025EXJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR776XHE
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB707BQA
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS055RSY at ENCODE; https://www.encodeproject.org/ENCBS055RSY/


title: TF ChIP-seq from HepG2 (ENCLB163HQX)

description:
https://www.encodeproject.org/experiments/ENCSR725QZQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR725QZQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR524BHN
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB163HQX
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting TIGD3

value: male

value: ENCBS153API at ENCODE; https://www.encodeproject.org/ENCBS153API/


title: TF ChIP-seq from HepG2 (ENCLB667JAG)

description:
https://www.encodeproject.org/experiments/ENCSR735VJE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR735VJE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR388OQM
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB667JAG
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: ENCBS952YBL at ENCODE; https://www.encodeproject.org/ENCBS952YBL/


title: TF ChIP-seq from HepG2 (ENCLB181NNC)

description:
https://www.encodeproject.org/experiments/ENCSR725QZQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR725QZQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR524BHN
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB181NNC
fragmentation methods: sonication (generic)

value: child

value: ENCBS886NNM at ENCODE; https://www.encodeproject.org/ENCBS886NNM/


title: TF ChIP-seq from HepG2 (ENCLB512ORO)

description:
https://www.encodeproject.org/experiments/ENCSR227PHM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR227PHM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR621FPD
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB512ORO
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF501

value: 15 year

value: ENCBS212GTR at ENCODE; https://www.encodeproject.org/ENCBS212GTR/


title: TF ChIP-seq from HepG2 (ENCLB104FDQ)

description:
https://www.encodeproject.org/experiments/ENCSR227PHM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR227PHM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR621FPD
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB104FDQ
fragmentation methods: sonication (generic)

value: ENCBS716XYA at ENCODE; https://www.encodeproject.org/ENCBS716XYA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB738END)

description:
https://www.encodeproject.org/experiments/ENCSR227MRE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR227MRE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB738END
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting KDM5B

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS998DFS at ENCODE; https://www.encodeproject.org/ENCBS998DFS/


title: TF ChIP-seq from HepG2 (ENCLB009IBA)

description:
https://www.encodeproject.org/experiments/ENCSR722TRY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR722TRY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB009IBA
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting PAWR

value: PAWR

value: ENCBS783MXV at ENCODE; https://www.encodeproject.org/ENCBS783MXV/


title: TF ChIP-seq from HepG2 (ENCLB702OGP)

description:
https://www.encodeproject.org/experiments/ENCSR024ZIS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR024ZIS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB702OGP
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF260

value: cell line

value: ENCBS357DPV at ENCODE; https://www.encodeproject.org/ENCBS357DPV/


title: TF ChIP-seq from HepG2 (ENCLB060RJJ)

description:
https://www.encodeproject.org/experiments/ENCSR227MRE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR227MRE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB060RJJ
fragmentation methods: sonication (generic)

value: male

value: ENCBS403DEM at ENCODE; https://www.encodeproject.org/ENCBS403DEM/


title: TF ChIP-seq from HepG2 (ENCLB813POV)

description:
https://www.encodeproject.org/experiments/ENCSR722TRY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR722TRY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB813POV
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: ENCBS584ZNC at ENCODE; https://www.encodeproject.org/ENCBS584ZNC/


title: TF ChIP-seq from HepG2 (ENCLB166ENQ)

description:
https://www.encodeproject.org/experiments/ENCSR020CLV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR020CLV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR555EMB
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB166ENQ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF891

value: child

value: ENCBS201SIO at ENCODE; https://www.encodeproject.org/ENCBS201SIO/


title: TF ChIP-seq from HepG2 (ENCLB252LFU)

description:
https://www.encodeproject.org/experiments/ENCSR225SLE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR225SLE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR856RWG
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB252LFU
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF569

value: 15 year

value: ENCBS028CUP at ENCODE; https://www.encodeproject.org/ENCBS028CUP/


title: TF ChIP-seq from HepG2 (ENCLB166DTO)

description:
https://www.encodeproject.org/experiments/ENCSR020CLV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR020CLV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR555EMB
encode release date: 2020-07-09
lab: Richard Myers, HAIB
library encode accession: ENCLB166DTO
fragmentation methods: sonication (generic)

value: ENCBS001BPG at ENCODE; https://www.encodeproject.org/ENCBS001BPG/


title: TF ChIP-seq from HepG2 (ENCLB058ZFK)

description:
https://www.encodeproject.org/experiments/ENCSR720PDY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR720PDY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB058ZFK
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF20

value: ENCBS090VQJ at ENCODE; https://www.encodeproject.org/ENCBS090VQJ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB976KCU)

description:
https://www.encodeproject.org/experiments/ENCSR720PDY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR720PDY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB976KCU
fragmentation methods: sonication (generic)

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS199XIG at ENCODE; https://www.encodeproject.org/ENCBS199XIG/


title: TF ChIP-seq from HepG2 (ENCLB067GFM)

description:
https://www.encodeproject.org/experiments/ENCSR228ZYW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR228ZYW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB067GFM
fragmentation methods: sonication (generic)

value: ENCBS612KAW at ENCODE; https://www.encodeproject.org/ENCBS612KAW/


title: TF ChIP-seq from HepG2 (ENCLB008ZJJ)

description:
https://www.encodeproject.org/experiments/ENCSR017XHZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR017XHZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP, ENCSR555EMB
encode release date: 2020-10-22
lab: Richard Myers, HAIB
library encode accession: ENCLB008ZJJ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF707

value: cell line

value: ENCBS723ODP at ENCODE; https://www.encodeproject.org/ENCBS723ODP/


title: TF ChIP-seq from HepG2 (ENCLB206JHK)

description:
https://www.encodeproject.org/experiments/ENCSR225SLE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR225SLE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR856RWG
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB206JHK
fragmentation methods: sonication (generic)

value: male

value: ENCBS282VPL at ENCODE; https://www.encodeproject.org/ENCBS282VPL/


title: TF ChIP-seq from HepG2 (ENCLB409MII)

description:
https://www.encodeproject.org/experiments/ENCSR417EWD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR417EWD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB409MII
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting FUBP3

value: hepatocellular carcinoma

value: ENCBS323DVJ at ENCODE; https://www.encodeproject.org/ENCBS323DVJ/


title: TF ChIP-seq from HepG2 (ENCLB904TUY)

description:
https://www.encodeproject.org/experiments/ENCSR417EWD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR417EWD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB904TUY
fragmentation methods: sonication (generic)

value: child

value: ENCBS486BAK at ENCODE; https://www.encodeproject.org/ENCBS486BAK/


title: TF ChIP-seq from HepG2 (ENCLB127NQF)

description:
https://www.encodeproject.org/experiments/ENCSR224NQI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR224NQI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR479INP
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB127NQF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF414

value: 15 year

value: ENCBS601TTF at ENCODE; https://www.encodeproject.org/ENCBS601TTF/


title: TF ChIP-seq from HepG2 (ENCLB254BYI)

description:
https://www.encodeproject.org/experiments/ENCSR224NQI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR224NQI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR479INP
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB254BYI
fragmentation methods: sonication (generic)

value: ENCBS342YVK at ENCODE; https://www.encodeproject.org/ENCBS342YVK/


title: TF ChIP-seq from HepG2 (ENCLB986OYY)

description:
https://www.encodeproject.org/experiments/ENCSR016OHL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR016OHL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB986OYY
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF317

value: ENCBS390BCS at ENCODE; https://www.encodeproject.org/ENCBS390BCS/


title: TF ChIP-seq from HepG2 (ENCLB723JMQ)

description:
https://www.encodeproject.org/experiments/ENCSR711KBM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR711KBM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB723JMQ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF12

value: ENCBS679VUA at ENCODE; https://www.encodeproject.org/ENCBS679VUA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB570OJP)

description:
https://www.encodeproject.org/experiments/ENCSR016OHL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR016OHL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-14
lab: Richard Myers, HAIB
library encode accession: ENCLB570OJP
fragmentation methods: sonication (generic)

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS529VZM at ENCODE; https://www.encodeproject.org/ENCBS529VZM/


title: TF ChIP-seq from HepG2 (ENCLB975WNA)

description:
https://www.encodeproject.org/experiments/ENCSR013DKM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR013DKM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB975WNA
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF530

value: cell line

value: ENCBS031LCQ at ENCODE; https://www.encodeproject.org/ENCBS031LCQ/


title: TF ChIP-seq from HepG2 (ENCLB208FPW)

description:
https://www.encodeproject.org/experiments/ENCSR014HQD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR014HQD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR770PLF
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB208FPW
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF382

value: male

value: ENCBS614AXD at ENCODE; https://www.encodeproject.org/ENCBS614AXD/


title: TF ChIP-seq from HepG2 (ENCLB215GJK)

description:
https://www.encodeproject.org/experiments/ENCSR014HQD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR014HQD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR770PLF
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB215GJK
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: ENCBS175FCO at ENCODE; https://www.encodeproject.org/ENCBS175FCO/


title: TF ChIP-seq from HepG2 (ENCLB241MDP)

description:
https://www.encodeproject.org/experiments/ENCSR220AQM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR220AQM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB241MDP
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting GTF3A

value: child

value: ENCBS037ZIU at ENCODE; https://www.encodeproject.org/ENCBS037ZIU/


title: TF ChIP-seq from HepG2 (ENCLB694HJX)

description:
https://www.encodeproject.org/experiments/ENCSR220AQM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR220AQM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB694HJX
fragmentation methods: sonication (generic)

value: 15 year

value: ENCBS753HYX at ENCODE; https://www.encodeproject.org/ENCBS753HYX/


title: TF ChIP-seq from HepG2 (ENCLB567III)

description:
https://www.encodeproject.org/experiments/ENCSR711KBM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR711KBM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB567III
fragmentation methods: sonication (generic)

value: ENCBS353DZO at ENCODE; https://www.encodeproject.org/ENCBS353DZO/


title: TF ChIP-seq from HepG2 (ENCLB814BXP)

description:
https://www.encodeproject.org/experiments/ENCSR215XSZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR215XSZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB814BXP
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZMAT5

value: ENCBS554QEI at ENCODE; https://www.encodeproject.org/ENCBS554QEI/


title: TF ChIP-seq from HepG2 (ENCLB069YZB)

description:
https://www.encodeproject.org/experiments/ENCSR407BPU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR407BPU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB069YZB
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF609

value: ENCBS499NXC at ENCODE; https://www.encodeproject.org/ENCBS499NXC/


title: TF ChIP-seq from HepG2 (ENCLB665EWN)

description:
https://www.encodeproject.org/experiments/ENCSR024ZIS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR024ZIS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB665EWN
fragmentation methods: sonication (generic)

value: ENCBS407CAS at ENCODE; https://www.encodeproject.org/ENCBS407CAS/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB038COA)

description:
https://www.encodeproject.org/experiments/ENCSR013DKM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR013DKM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB038COA
fragmentation methods: sonication (generic)

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS572CXD at ENCODE; https://www.encodeproject.org/ENCBS572CXD/


title: TF ChIP-seq from HepG2 (ENCLB950RML)

description:
https://www.encodeproject.org/experiments/ENCSR017XHZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR017XHZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP, ENCSR555EMB
encode release date: 2020-10-22
lab: Richard Myers, HAIB
library encode accession: ENCLB950RML
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS177QXT at ENCODE; https://www.encodeproject.org/ENCBS177QXT/


title: TF ChIP-seq from HepG2 (ENCLB811NTY)

description:
https://www.encodeproject.org/experiments/ENCSR708KAA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR708KAA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR621FPD
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB811NTY
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting MAFG

value: MAFG

value: male

value: ENCBS765IWO at ENCODE; https://www.encodeproject.org/ENCBS765IWO/


title: TF ChIP-seq from HepG2 (ENCLB598YFX)

description:
https://www.encodeproject.org/experiments/ENCSR707RKU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR707RKU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB598YFX
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting RORA

value: RORA

value: hepatocellular carcinoma

value: child

value: ENCBS608LAA at ENCODE; https://www.encodeproject.org/ENCBS608LAA/


title: TF ChIP-seq from HepG2 (ENCLB176QXR)

description:
https://www.encodeproject.org/experiments/ENCSR707RKU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR707RKU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB176QXR
fragmentation methods: sonication (generic)

value: 15 year

value: ENCBS925TQK at ENCODE; https://www.encodeproject.org/ENCBS925TQK/


title: TF ChIP-seq from HepG2 (ENCLB195RFZ)

description:
https://www.encodeproject.org/experiments/ENCSR215XSZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR215XSZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2020-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB195RFZ
fragmentation methods: sonication (generic)

value: ENCBS910JXO at ENCODE; https://www.encodeproject.org/ENCBS910JXO/


title: TF ChIP-seq from HepG2 (ENCLB101CLW)

description:
https://www.encodeproject.org/experiments/ENCSR410FEH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR410FEH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB101CLW
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting TBX2

value: ENCBS683SBC at ENCODE; https://www.encodeproject.org/ENCBS683SBC/


title: TF ChIP-seq from HepG2 (ENCLB483LBY)

description:
https://www.encodeproject.org/experiments/ENCSR410FEH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR410FEH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB483LBY
fragmentation methods: sonication (generic)

value: ENCBS700UAQ at ENCODE; https://www.encodeproject.org/ENCBS700UAQ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB286EFG)

description:
https://www.encodeproject.org/experiments/ENCSR708KAA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR708KAA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR621FPD
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB286EFG
fragmentation methods: sonication (generic)

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS269URK at ENCODE; https://www.encodeproject.org/ENCBS269URK/


title: TF ChIP-seq from HepG2 (ENCLB487VKJ)

description:
https://www.encodeproject.org/experiments/ENCSR009LIA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR009LIA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB487VKJ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF10

value: cell line

value: ENCBS542LBG at ENCODE; https://www.encodeproject.org/ENCBS542LBG/


title: TF ChIP-seq from HepG2 (ENCLB714KUC)

description:
https://www.encodeproject.org/experiments/ENCSR407BPU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR407BPU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB714KUC
fragmentation methods: sonication (generic)

value: male

value: ENCBS060RHE at ENCODE; https://www.encodeproject.org/ENCBS060RHE/


title: TF ChIP-seq from SK-N-SH (ENCLB896QGH)

description:
https://www.encodeproject.org/experiments/ENCSR706VOO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on SK-N-SH
experiment encode accession: ENCSR706VOO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR086KKZ
encode release date: 2020-07-16
lab: Richard Myers, HAIB
library encode accession: ENCLB896QGH
fragmentation methods: sonication (generic)

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting GATA2

value: SK-N-SH

value: female

value: Metastatic neuroblastoma from bone marrow

value: 4 year

value: ENCBS999VYO at ENCODE; https://www.encodeproject.org/ENCBS999VYO/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: TF ChIP-seq from SK-N-SH (ENCLB661ODC)

description:
https://www.encodeproject.org/experiments/ENCSR706VOO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on SK-N-SH
experiment encode accession: ENCSR706VOO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR086KKZ
encode release date: 2020-07-16
lab: Richard Myers, HAIB
library encode accession: ENCLB661ODC
fragmentation methods: sonication (generic)

value: child

value: ENCBS850UIP at ENCODE; https://www.encodeproject.org/ENCBS850UIP/


title: TF ChIP-seq from HepG2 (ENCLB729FBR)

description:
https://www.encodeproject.org/experiments/ENCSR704ENT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR704ENT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB729FBR
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF776

value: hepatocellular carcinoma

value: 15 year

value: ENCBS567BEX at ENCODE; https://www.encodeproject.org/ENCBS567BEX/


title: TF ChIP-seq from HepG2 (ENCLB734WZF)

description:
https://www.encodeproject.org/experiments/ENCSR206BVQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR206BVQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB734WZF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF786

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS788LYK at ENCODE; https://www.encodeproject.org/ENCBS788LYK/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB820PHH)

description:
https://www.encodeproject.org/experiments/ENCSR213QOZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR213QOZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB820PHH
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting SMAD1

value: cell line

value: male

value: ENCBS713VSK at ENCODE; https://www.encodeproject.org/ENCBS713VSK/


title: TF ChIP-seq from HepG2 (ENCLB921HLY)

description:
https://www.encodeproject.org/experiments/ENCSR213QOZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR213QOZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB921HLY
fragmentation methods: sonication (generic)

value: ENCBS392SPU at ENCODE; https://www.encodeproject.org/ENCBS392SPU/


title: TF ChIP-seq from HepG2 (ENCLB389DVB)

description:
https://www.encodeproject.org/experiments/ENCSR206BVQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR206BVQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2020-08-28
lab: Richard Myers, HAIB
library encode accession: ENCLB389DVB
fragmentation methods: sonication (generic)

value: ENCBS347IKX at ENCODE; https://www.encodeproject.org/ENCBS347IKX/


title: TF ChIP-seq from HepG2 (ENCLB315MCS)

description:
https://www.encodeproject.org/experiments/ENCSR400JHG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR400JHG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR555EMB, ENCSR743HNM
encode release date: 2020-10-22
lab: Richard Myers, HAIB
library encode accession: ENCLB315MCS
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting ZNF703

value: ENCBS351HAI at ENCODE; https://www.encodeproject.org/ENCBS351HAI/


title: TF ChIP-seq from HepG2 (ENCLB630CMS)

description:
https://www.encodeproject.org/experiments/ENCSR700PNE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR700PNE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB630CMS
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting MAZ

value: MAZ

value: ENCBS241FYP at ENCODE; https://www.encodeproject.org/ENCBS241FYP/


title: N4_RNAseq

status: Public on Mar 20 2021

city: Beijing

first: Hong

last: Wu

address: Yiheyuan Road 5#

country: China

institute: Peking University

description:
RNA-seq of human: T cell of normal control N4
TALL_count_FPKM.xls

library_source: transcriptomic

data_processing:
RNA-seq reads were aligned to the hg19 genome with TopHat (v2.1.0) using default settings. Duplicates were removed, and aligned reads were calculated for each protein-coding gene using HTSeq, followed by FPKM transformation by normalizing gene exon length and sequencing depth.
ATAC-seq reads were mapped with Bowtie2 using parameter -X 2000 --no-mixed --no-discordant --no-unal. Aligned reads were filtered for a minimum MAPQ of 20, and duplicates were removed using SAMtools. Signal tracks and peaks were generated by using the –SPMR option in MACS2. Then, the UCSC Genome Browser utility bedGraphToBigWig was used with default parameters to transform the bedgraph files to bigwig files.
ChIA-PET2 was used to trim the bridge linkers of BL-Hi-C data and HiC-Pro to align reads, filter artifact fragments, and remove duplicates; Juicer was applied to the resulting uniquely mapped contacts to generate individual or merged Hi-C files that could be deposited as contact matrices with multiple resolutions.
Loops were called by HiCCUPS at 5 kb and 10 kb resolutions with default parameters (except -d 15000,20000) for pooled Hi-C matrices of the healthy T cell controls, ETP and non-ETP samples, respectively.
Genome_build: hg19
Supplementary_files_format_and_content: .validpairs of BL-Hi-C data were generated by HiC-Pro;.hic files were genrated by Juicer which compress Hi-C matrix under mutiscale resolutions;.h5 files were generated by HiCExplorer which can be visualized by  pyGenomeTracks;.bedpe files were loops called by HiCCUPS;.bigwig files were generated using MACS2;.excel  file includes gene count and FPKM for each sample

molecule: total RNA

source_name: peripheral blood

extract_protocol:
Leukemia blast cells were prepared by density-gradient centrifugation of bone marrow samples, and CD19-CD14-CD235-CD45+CD7+ cells were further purified by FACS analysis using anti-human antibodies for RNA-seq and Hi-C library preparations. Peripheral blood samples were obtained from four healthy donors under the approval of the ethics committee of Peking University. T cells were purified using the EasySepTM Direct Human T Cell Isolation Kit (StemCell Technology #19661).
Hi-C was performed on one million cells/sample according to the BL-Hi-C protocol (PMID: 29158486 ). RNA libraries were prepared for sequencing using standard Illumina protocols. ATAC  was performed on 50,000 Loucy cells according to the Omni-ATAC protocol  (PMID:28846090) with TruePrep DNA Library Prep Kit V2 for Illumina® (Vazyme TD501)

tag: cell type

value: normal T cell

tag: subtype


title: N3_RNAseq

description:
RNA-seq of human: T cell of normal control N3
TALL_count_FPKM.xls


title: N2_RNAseq

description:
RNA-seq of human: T cell of normal control N2
TALL_count_FPKM.xls


title: TF ChIP-seq from HepG2 (ENCLB280MTY)

description:
https://www.encodeproject.org/experiments/ENCSR009LIA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR009LIA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2020-08-17
lab: Richard Myers, HAIB
library encode accession: ENCLB280MTY
fragmentation methods: sonication (generic)

value: child

value: ENCBS963FNJ at ENCODE; https://www.encodeproject.org/ENCBS963FNJ/


title: TF ChIP-seq from HepG2 (ENCLB813MZJ)

description:
https://www.encodeproject.org/experiments/ENCSR700PNE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR700PNE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR690IYP
encode release date: 2020-07-01
lab: Richard Myers, HAIB
library encode accession: ENCLB813MZJ
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: 15 year

value: ENCBS690SBB at ENCODE; https://www.encodeproject.org/ENCBS690SBB/


title: N1_RNAseq

description:
RNA-seq of human: T cell of normal control N1
TALL_count_FPKM.xls


title: TF ChIP-seq from HepG2 (ENCLB601NGJ)

description:
https://www.encodeproject.org/experiments/ENCSR704ENT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR704ENT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2020-07-08
lab: Richard Myers, HAIB
library encode accession: ENCLB601NGJ
fragmentation methods: sonication (generic)

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS283KXK at ENCODE; https://www.encodeproject.org/ENCBS283KXK/


title: 132_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 132
TALL_count_FPKM.xls

source_name: bone marrow

value: primary leukemic blasts

value: nonETP


title: 123_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 123
TALL_count_FPKM.xls


title: 121_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 121
TALL_count_FPKM.xls


title: 122_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 122
TALL_count_FPKM.xls


title: 108_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 108
TALL_count_FPKM.xls

value: ETP


title: 118_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 118
TALL_count_FPKM.xls


title: 124_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 124
TALL_count_FPKM.xls


title: 102_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 102
TALL_count_FPKM.xls


title: 103_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 103
TALL_count_FPKM.xls


title: 115_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 115
TALL_count_FPKM.xls


title: TF ChIP-seq from HepG2 (ENCLB007PRT)

description:
https://www.encodeproject.org/experiments/ENCSR400JHG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR400JHG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR555EMB, ENCSR743HNM
encode release date: 2020-10-22
lab: Richard Myers, HAIB
library encode accession: ENCLB007PRT
fragmentation methods: sonication (generic)

value: cell line

value: male

value: ENCBS809GUE at ENCODE; https://www.encodeproject.org/ENCBS809GUE/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: 076_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 076
TALL_count_FPKM.xls


title: 077_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 077
TALL_count_FPKM.xls


title: 098_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 098
TALL_count_FPKM.xls


title: N4_HiC

description:
BL-Hi-C of human: T cell of normal control N4
normal.hic
normal_5k.h5
normal_merged_loops.bedpe


title: N3_HiC

description:
BL-Hi-C of human: T cell of normal control N3
normal.hic
normal_5k.h5
normal_merged_loops.bedpe


title: N2_HiC

description:
BL-Hi-C of human: T cell of normal control N2
normal.hic
normal_5k.h5
normal_merged_loops.bedpe


title: N1_HiC

description:
BL-Hi-C of human: T cell of normal control N1
normal.hic
normal_5k.h5
normal_merged_loops.bedpe


title: 117_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 117
TALL_count_FPKM.xls


title: 116_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 116
TALL_count_FPKM.xls


title: 132_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 132
nonETP.hic
nonETP_5k.h5
nonETP_merged_loops.bedpe


title: 122_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 122
nonETP.hic
nonETP_5k.h5
nonETP_merged_loops.bedpe


title: 123_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 123
nonETP.hic
nonETP_5k.h5
nonETP_merged_loops.bedpe


title: 118_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 118
nonETP.hic
nonETP_5k.h5
nonETP_merged_loops.bedpe


title: 117_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 117
nonETP.hic
nonETP_5k.h5
nonETP_merged_loops.bedpe


title: 093_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 093
TALL_count_FPKM.xls


title: 116_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 116
nonETP.hic
nonETP_5k.h5
nonETP_merged_loops.bedpe


title: 097_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 097
TALL_count_FPKM.xls


title: 115_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 115
ETP.hic
ETP_5k.h5
ETP_merged_loops.bedpe


title: 108_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 108
ETP.hic
ETP_5k.h5
ETP_merged_loops.bedpe


title: 107_RNAseq

description:
RNA-seq of human: blast cells of T-ALL patient 107
TALL_count_FPKM.xls


title: 107_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 107
ETP.hic
ETP_5k.h5
ETP_merged_loops.bedpe


title: 103_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 103
nonETP.hic
nonETP_5k.h5
nonETP_merged_loops.bedpe


title: 102_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 102
nonETP.hic
nonETP_5k.h5
nonETP_merged_loops.bedpe


title: 097_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 097
ETP.hic
ETP_5k.h5
ETP_merged_loops.bedpe


title: 098_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 098
ETP.hic
ETP_5k.h5
ETP_merged_loops.bedpe


title: 077_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 077
ETP.hic
ETP_5k.h5
ETP_merged_loops.bedpe


title: 076_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 076
ETP.hic
ETP_5k.h5
ETP_merged_loops.bedpe


title: 093_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 093
ETP.hic
ETP_5k.h5
ETP_merged_loops.bedpe


title: 121_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 121
nonETP.hic
nonETP_5k.h5
nonETP_merged_loops.bedpe


title: 124_HiC

description:
BL-Hi-C of human: blast cells of T-ALL patient 124
nonETP.hic
nonETP_5k.h5
nonETP_merged_loops.bedpe


title: 021_CC

status: Public on Mar 11 2021

city: TEMPE

first: QI

last: WANG

state: AZ

institute: ARIZONA STATE UNIVERSITY-TEMPE CAMPUS

data_processing:
Illumina Casava1.7 software used for basecalling.
Sequenced reads were mapped to ensembl GRCH37.75 reference genome using STAR v2.5.2  with parameters --outFilterType BySJout --outFilterMultimapNmax 20 --alignSJoverhangMin 8 \  --alignSJDBoverhangMin 1 --outFilterMismatchNmax 999 --outFilterMismatchNoverLmax 0.04 \  --alignIntronMin 20 --alignIntronMax 1000000 --alignMatesGapMax 1000000
Reads counts were calculated by the featureCounts function from subread program v1.6.0
Genome_build: ensembl GRCH37.75
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

source_name: blood

extract_protocol:
Peripheral blood was collected from patients using standard venipuncture techniques into PreAnalytiX PAXgene blood DNA and RNA tubes. Vacutainers were inverted several times and stored at -80°C. Samples were isolated from peripheral leukocytes according to manufacturer instructions with the PAXgene DNA or RNA isolation kits (Qiagen). Isolated samples were stored at -20°C.
mRNA was sequenced using the Illumina TruSeq RNA Library Prep kit on the HiSeq 2000 platform following the manufacturer’s protocol. Paired end RNA reads were aligned to human genome reference (GRCh37 ensembl version 70), using STAR RNAseq read aligner (33), and accepted mapped reads were summarized to gene level counts using the “featureCounts” function of the subread software package (34). Differentially expressed genes (DEGs) were reported by the DESeq2 package (35) from the count matrix following standard protocol, using age + sex + RIN as covariates.

tag: tissue

value: whole blood

tag: group

value: Control


title: 036_CC


title: 027_CC


title: 030_CC


title: 026_CC


title: 039_CC


title: MAYO_038

type: genomic

hyb_protocol: We examined methylation using Illumina Infinium HumanMethylation450K Beadchips per the manufacturer protocol. Genomic DNA samples were first bisulfite converted using the Zymo EZ DNA methylation kit, per manufacturer instructions with the alternative incubation conditions specified in the protocol for compatibility with the Illumina Infinium Methylation Assays. Bisulfite converted DNA was amplified, fragmented, precipitated, resuspended, and hybridized to beadchips following the manual protocol. Fluorescent staining was automated with Illumina’s Tecan system. The chips were coated and vacuum-dried for preservation before scanning to retrieve fluorescence intensity data, representing methylated or unmethylated positions, with Illumina’s iScan. Data processing was carried out in ChAMP (The Chip Analysis Methylation Pipeline) in R4.0.0 with all the default parameters.

label: Cy3 and Cy5

extract_protocol: Peripheral blood was collected from patients using standard venipuncture techniques into PreAnalytiX PAXgene blood DNA and RNA tubes. Vacutainers were inverted several times and stored at -80°C. Samples were isolated from peripheral leukocytes according to manufacturer instructions with the PAXgene DNA or RNA isolation kits (Qiagen). Isolated samples were stored at -20°C.


title: 023_CC


title: MAYO_049

scan_protocol: We examined methylation using Illumina Infinium HumanMethylation450K Beadchips per the manufacturer protocol. Genomic DNA samples were first bisulfite converted using the Zymo EZ DNA methylation kit, per manufacturer instructions with the alternative incubation conditions specified in the protocol for compatibility with the Illumina Infinium Methylation Assays. Bisulfite converted DNA was amplified, fragmented, precipitated, resuspended, and hybridized to beadchips following the manual protocol. Fluorescent staining was automated with Illumina’s Tecan system. The chips were coated and vacuum-dried for preservation before scanning to retrieve fluorescence intensity data, representing methylated or unmethylated positions, with Illumina’s iScan. Data processing was carried out in ChAMP (The Chip Analysis Methylation Pipeline) in R4.0.0 with all the default parameters.

value: PD


title: MAYO_051

data_processing: We examined methylation using Illumina Infinium HumanMethylation450K Beadchips per the manufacturer protocol. Genomic DNA samples were first bisulfite converted using the Zymo EZ DNA methylation kit, per manufacturer instructions with the alternative incubation conditions specified in the protocol for compatibility with the Illumina Infinium Methylation Assays. Bisulfite converted DNA was amplified, fragmented, precipitated, resuspended, and hybridized to beadchips following the manual protocol. Fluorescent staining was automated with Illumina’s Tecan system. The chips were coated and vacuum-dried for preservation before scanning to retrieve fluorescence intensity data, representing methylated or unmethylated positions, with Illumina’s iScan. Data processing was carried out in ChAMP (The Chip Analysis Methylation Pipeline) in R4.0.0 with all the default parameters.


title: MAYO_040

label_protocol: We examined methylation using Illumina Infinium HumanMethylation450K Beadchips per the manufacturer protocol. Genomic DNA samples were first bisulfite converted using the Zymo EZ DNA methylation kit, per manufacturer instructions with the alternative incubation conditions specified in the protocol for compatibility with the Illumina Infinium Methylation Assays. Bisulfite converted DNA was amplified, fragmented, precipitated, resuspended, and hybridized to beadchips following the manual protocol. Fluorescent staining was automated with Illumina’s Tecan system. The chips were coated and vacuum-dried for preservation before scanning to retrieve fluorescence intensity data, representing methylated or unmethylated positions, with Illumina’s iScan. Data processing was carried out in ChAMP (The Chip Analysis Methylation Pipeline) in R4.0.0 with all the default parameters.


title: MAYO_011


title: 038_CC


title: MAYO_031


title: MAYO_015


title: MAYO_048


title: MAYO_046


title: 043_CC


title: MAYO_036


title: MAYO_045


title: MAYO_016


title: MAYO_039


title: 047_CC


title: MAYO_047


title: MAYO_021


title: MAYO_024


title: MAYO_030


title: MAYO_043


title: MAYO_027


title: 040_CC


title: MAYO_026


title: 041_CC


title: MAYO_041


title: 022_PD


title: 031_PD


title: 025_CC


title: MAYO_029


title: MAYO_022


title: 028_PD


title: MAYO_050


title: 050_PD


title: MAYO_023


title: 051_PD


title: 024_PD


title: 029_CC


title: MAYO_028


title: 012_PD


title: 015_PD


title: MAYO_025


title: 045_PD


title: MAYO_012


title: WAT, 099_V4

status: Public on Feb 24 2021

city: Oxford

first: Elie

last: Antoun

state: United Kingdom

address: Nuffield Department of Medicine

department: CAMS China Oxford Institute (CAMS-COI

country: United Kingdom

institute: University of Oxford

data_processing:
Illumina Casava software used for basecalling.
Sequenced reads were trimmed for adaptor sequence and low-quality bases removed, with resulting reads that were less than 25bp removed. Reads were then mapped to hg38.0 whole genome using TopHat, utilising bowtie2, with parameter --library-type fr-firststrand.
Number of reads aligned to each gene in the hg38.0 genome were quantified using HTSeq, using the following paratmers: --stranded=reverse -a 3, and the hg38.0 GTF file from ENSEMBL.
Genome_build: hg38.0
Supplementary_files_format_and_content: tab-delimited text files include the normalized counts per million normalized for library size, grouped by samples of the same BMI subgroup and treatment in a single file.

source_name: White adipose tissue

extract_protocol:
White adipose tissue was exctracted via scalpular incision, snap frozen in liquid nitrogen, and RNA was harvested using the Qiagen RNeasy lipid tissue mini RNA Isolation Kit.
RNA libraries were prepared for sequencing following standard Illumina protocols

treatment_protocol: Indviduals were supplemented with 3g Fish oil (1.1g EPA and 0.8g DHA) or 3g Corn oil/day for 12 weeks.

tag: bmi group

value: Obese

value: White adipose tissue

tag: time point

tag: treatment group

value: Fish oil (3g/day 1.1g EPA + 0.8g DHA)


title: WAT, 100_V4


title: 011_PD


title: 016_PD


title: WAT, 092_V4

value: Corn oil (3g/day)


title: 049_PD


title: WAT, 078_V4


title: WAT, 085_V4


title: WAT, 072_V4


title: WAT, 070_V4


title: WAT, 063_V4


title: WAT, 052_V4


title: WAT, 054_V4


title: WAT, 042_V4

value: Normal weight


title: WAT, 040_V4


title: WAT, 034_V4


title: WAT, 017_V4


title: WAT, 010_V4


title: WAT, 024_V4


title: WAT, 001_V4


title: WAT, 092_V2


title: WAT, 085_V2


title: WAT, 015_V4


title: WAT, 043_V4


title: WAT, 099_V2


title: WAT, 028_V4


title: WAT, 070_V2


title: WAT, 054_V2


title: WAT, 100_V2


title: WAT, 052_V2


title: WAT, 072_V2


title: WAT, 063_V2


title: WAT, 034_V2


title: WAT, 028_V2


title: WAT, 042_V2


title: WAT, 043_V2


title: WAT, 040_V2


title: WAT, 024_V2


title: WAT, 017_V2


title: WAT, 015_V2


title: WAT, 001_V2


title: WAT, 078_V2