title: ATAC-seq from neural tube (ENCLB507LHR)

description:
https://www.encodeproject.org/experiments/ENCSR282YTE/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on embryonic e11.5 mouse neural tube
experiment encode accession: ENCSR282YTE
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-10-10
lab: Bing Ren, UCSD
library encode accession: ENCLB507LHR
fragmentation methods: chemical (Nextera tagmentation)
size range: 200-750

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (11.5 days)

value: neural tube

value: Neural tube from 88 embyronic 11.5 day mice

value: ENCBS183YVD at ENCODE; https://www.encodeproject.org/ENCBS183YVD/


title: ATAC-seq from neural tube (ENCLB692QBH)

status: Public on Apr 22 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR282YTE/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on embryonic e11.5 mouse neural tube
experiment encode accession: ENCSR282YTE
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-10-10
lab: Bing Ren, UCSD
library encode accession: ENCLB692QBH
fragmentation methods: chemical (Nextera tagmentation)
size range: 200-750

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Mus musculus

source_name: Mus musculus strain B6NCrl mixed sex embryo (11.5 days) neural tube tissue

value: tissue

tag: description

value: Neural tube from 46 embryonic 11.5 day mice

tag: biosample encode accession

tag: Sex

value: pooled male and female

tag: dev stage

value: embryonic

tag: age

tag: lab

value: Len Pennacchio, LBNL

tag: source

value: Len Pennacchio

tag: health state

value: healthy

tag: link

value: ENCBS654KOE at ENCODE; https://www.encodeproject.org/ENCBS654KOE/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: DNase-seq from midbrain (ENCLB043OFW)

description:
https://www.encodeproject.org/experiments/ENCSR773SAG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR773SAG
assay title: DNase-seq
assembly: mm10
encode release date: 2017-09-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB043OFW

source_name: Mus musculus strain B6NCrl mixed sex embryo (10.5 days) midbrain tissue

value: midbrain

value: John Stamatoyannopoulos, UW

value: Mark Groudine

value: ENCBS559ZQG at ENCODE; https://www.encodeproject.org/ENCBS559ZQG/


title: DNase-seq from cortex (ENCLB117LHJ)

description:
https://www.encodeproject.org/experiments/ENCSR263XCT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR263XCT
assay title: DNase-seq
assembly: mm10
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB117LHJ

source_name: Mus musculus strain B6NCrl cortex tissue

value: cortex

value: not collected

value: unknown

value: The Jackson Laboratory

value: ENCBS127SPH at ENCODE; https://www.encodeproject.org/ENCBS127SPH/


title: ATAC-seq from stomach (ENCLB940TKW)

description:
https://www.encodeproject.org/experiments/ENCSR486XAS/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on embryonic e15.5 mouse stomach
experiment encode accession: ENCSR486XAS
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-10-10
lab: Bing Ren, UCSD
library encode accession: ENCLB940TKW
fragmentation methods: chemical (Nextera tagmentation)
size range: 200-750

source_name: Mus musculus strain B6NCrl stomach tissue mixed sex embryo (15.5 days)

value: stomach

value: tissue

value: Stomach from 62 embryonic 15.5 day mice

value: ENCBS355TAQ at ENCODE; https://www.encodeproject.org/ENCBS355TAQ/


title: ATAC-seq from embryonic facial prominence (ENCLB741QPR)

description:
https://www.encodeproject.org/experiments/ENCSR261ICG/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on embryonic e15.5 mouse embryonic facial prominence
experiment encode accession: ENCSR261ICG
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-10-10
lab: Bing Ren, UCSD
library encode accession: ENCLB741QPR
fragmentation methods: chemical (Nextera tagmentation)
size range: 200-750

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (15.5 days)

value: embryonic facial prominence

value: Embryonic facial prominence from 78 embryonic 15.5 day mice

value: embryonic

value: pooled male and female

value: Len Pennacchio, LBNL

value: ENCBS543BPM at ENCODE; https://www.encodeproject.org/ENCBS543BPM/


title: ATAC-seq from kidney (ENCLB087XNG)

description:
https://www.encodeproject.org/experiments/ENCSR758IRM/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on embryonic e14.5 mouse kidney
experiment encode accession: ENCSR758IRM
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-10-10
lab: Bing Ren, UCSD
library encode accession: ENCLB087XNG
fragmentation methods: chemical (Nextera tagmentation)
size range: 200-750

source_name: Mus musculus strain B6NTac;B6NCrl/Lap mixed sex embryo (14.5 days) kidney tissue

value: kidney

value: Kidney from 17 embryonic 14.5 day mice

value: Len Pennacchio

value: healthy

value: ENCBS034AAA at ENCODE; https://www.encodeproject.org/ENCBS034AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ATAC-seq from stomach (ENCLB626GQL)

description:
https://www.encodeproject.org/experiments/ENCSR486XAS/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on embryonic e15.5 mouse stomach
experiment encode accession: ENCSR486XAS
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-10-10
lab: Bing Ren, UCSD
library encode accession: ENCLB626GQL
fragmentation methods: chemical (Nextera tagmentation)
size range: 200-750

value: Stomach from 78 embryonic 15.5 day mice

value: ENCBS915SZN at ENCODE; https://www.encodeproject.org/ENCBS915SZN/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ATAC-seq from kidney (ENCLB299QNB)

description:
https://www.encodeproject.org/experiments/ENCSR758IRM/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on embryonic e14.5 mouse kidney
experiment encode accession: ENCSR758IRM
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-10-10
lab: Bing Ren, UCSD
library encode accession: ENCLB299QNB
fragmentation methods: chemical (Nextera tagmentation)
size range: 200-750

source_name: Mus musculus strain B6NTac;B6NCrl/Lap kidney tissue mixed sex embryo (14.5 days)

value: tissue

value: Kidney from pooled embryonic 14.5 day mice

value: ENCBS569AAA at ENCODE; https://www.encodeproject.org/ENCBS569AAA/


title: ATAC-seq from limb (ENCLB710VNY)

description:
https://www.encodeproject.org/experiments/ENCSR551WBK/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on embryonic e12.5 mouse limb
experiment encode accession: ENCSR551WBK
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-10-10
lab: Bing Ren, UCSD
library encode accession: ENCLB710VNY
fragmentation methods: chemical (Nextera tagmentation)
size range: 200-750

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (12.5 days)

value: limb

value: Limb from 88 embryonic 12.5 day mice

value: ENCBS731DGJ at ENCODE; https://www.encodeproject.org/ENCBS731DGJ/


title: ATAC-seq from midbrain (ENCLB738SGH)

description:
https://www.encodeproject.org/experiments/ENCSR468GUI/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on embryonic e15.5 mouse midbrain
experiment encode accession: ENCSR468GUI
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-05-10
lab: Bing Ren, UCSD
library encode accession: ENCLB738SGH
fragmentation methods: chemical (Nextera tagmentation)
size range: 200-750

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (15.5 days)

value: midbrain

value: Midbrain from 78 embryonic 15.5 day mice

value: embryonic

value: pooled male and female

value: Len Pennacchio, LBNL

value: ENCBS190ETJ at ENCODE; https://www.encodeproject.org/ENCBS190ETJ/


title: ATAC-seq from hindbrain (ENCLB819YMR)

description:
https://www.encodeproject.org/experiments/ENCSR012YAB/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on embryonic e11.5 mouse hindbrain
experiment encode accession: ENCSR012YAB
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-05-10
lab: Bing Ren, UCSD
library encode accession: ENCLB819YMR
fragmentation methods: chemical (Nextera tagmentation)
size range: 200-750

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (11.5 days)

value: hindbrain

value: Hindbrain from 88 embyronic 11.5 day mice

value: healthy

value: ENCBS976DPO at ENCODE; https://www.encodeproject.org/ENCBS976DPO/


title: ATAC-seq from embryonic facial prominence (ENCLB931TGU)

description:
https://www.encodeproject.org/experiments/ENCSR261ICG/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on embryonic e15.5 mouse embryonic facial prominence
experiment encode accession: ENCSR261ICG
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-10-10
lab: Bing Ren, UCSD
library encode accession: ENCLB931TGU
fragmentation methods: chemical (Nextera tagmentation)
size range: 200-750

value: embryonic facial prominence

value: Embryonic facial prominence from 62 embryonic 15.5 day mice

value: ENCBS900XQR at ENCODE; https://www.encodeproject.org/ENCBS900XQR/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ATAC-seq from hindbrain (ENCLB044YJH)

description:
https://www.encodeproject.org/experiments/ENCSR012YAB/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on embryonic e11.5 mouse hindbrain
experiment encode accession: ENCSR012YAB
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-05-10
lab: Bing Ren, UCSD
library encode accession: ENCLB044YJH
fragmentation methods: chemical (Nextera tagmentation)
size range: 200-750

value: tissue

value: Hindbrain from 109 embyronic 11.5 day mice

value: ENCBS199NDR at ENCODE; https://www.encodeproject.org/ENCBS199NDR/


title: ATAC-seq from midbrain (ENCLB782TSA)

description:
https://www.encodeproject.org/experiments/ENCSR468GUI/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on embryonic e15.5 mouse midbrain
experiment encode accession: ENCSR468GUI
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-05-10
lab: Bing Ren, UCSD
library encode accession: ENCLB782TSA
fragmentation methods: chemical (Nextera tagmentation)
size range: 200-750

value: midbrain

value: Midbrain from 62 embryonic 15.5 day mice

value: ENCBS381PEJ at ENCODE; https://www.encodeproject.org/ENCBS381PEJ/


title: ATAC-seq from liver (ENCLB903KLR)

description:
https://www.encodeproject.org/experiments/ENCSR255XTC/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on embryonic e16.5 mouse liver
experiment encode accession: ENCSR255XTC
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-10-10
lab: Bing Ren, UCSD
library encode accession: ENCLB903KLR
fragmentation methods: chemical (Nextera tagmentation)
size range: 200-750

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (16.5 days)

value: liver

value: Liver from 41 embyonic 16.5 day mice

value: embryonic

value: pooled male and female

value: ENCBS279BWR at ENCODE; https://www.encodeproject.org/ENCBS279BWR/


title: DNase-seq from forebrain (ENCLB675RRK)

description:
https://www.encodeproject.org/experiments/ENCSR756SPS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR756SPS
assay title: DNase-seq
assembly: mm10
encode release date: 2017-09-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB675RRK

source_name: Mus musculus strain B6NCrl mixed sex embryo (10.5 days) forebrain tissue

value: forebrain

value: John Stamatoyannopoulos, UW

value: Mark Groudine

value: ENCBS000YCQ at ENCODE; https://www.encodeproject.org/ENCBS000YCQ/


title: DNase-seq from forebrain (ENCLB753MIN)

description:
https://www.encodeproject.org/experiments/ENCSR756SPS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR756SPS
assay title: DNase-seq
assembly: mm10
encode release date: 2017-09-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB753MIN

value: ENCBS925TGV at ENCODE; https://www.encodeproject.org/ENCBS925TGV/


title: ATAC-seq from forebrain (ENCLB512IZL)

description:
https://www.encodeproject.org/experiments/ENCSR273UFV/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on embryonic e11.5 mouse forebrain
experiment encode accession: ENCSR273UFV
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-05-10
lab: Bing Ren, UCSD
library encode accession: ENCLB512IZL
fragmentation methods: chemical (Nextera tagmentation)
size range: 200-750

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (11.5 days)

value: Forebrain from 109 embyronic 11.5 day mice

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS745VOM at ENCODE; https://www.encodeproject.org/ENCBS745VOM/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: DNase-seq from heart (ENCLB503IYQ)

description:
https://www.encodeproject.org/experiments/ENCSR749ILN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR749ILN
assay title: DNase-seq
assembly: mm10
encode release date: 2017-09-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB503IYQ
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Mus musculus strain B6NCrl mixed sex embryo (10.5 days) heart tissue

value: heart

value: tissue

value: ENCBS180NZN at ENCODE; https://www.encodeproject.org/ENCBS180NZN/


title: DNase-seq from forebrain (ENCLB693GVR)

description:
https://www.encodeproject.org/experiments/ENCSR014SFF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR014SFF
assay title: DNase-seq
assembly: mm10
encode release date: 2017-09-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB693GVR
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Mus musculus strain B6NCrl mixed sex embryo (11.5 days) forebrain tissue

value: ENCBS555BYZ at ENCODE; https://www.encodeproject.org/ENCBS555BYZ/


title: ATAC-seq from liver (ENCLB286QAR)

description:
https://www.encodeproject.org/experiments/ENCSR255XTC/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on embryonic e16.5 mouse liver
experiment encode accession: ENCSR255XTC
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-10-10
lab: Bing Ren, UCSD
library encode accession: ENCLB286QAR
fragmentation methods: chemical (Nextera tagmentation)
size range: 200-750

value: liver

value: Liver pooled from embyonic 16.5 day mice

value: embryonic

value: ENCBS236CDJ at ENCODE; https://www.encodeproject.org/ENCBS236CDJ/


title: ATAC-seq from forebrain (ENCLB477WAK)

description:
https://www.encodeproject.org/experiments/ENCSR273UFV/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on embryonic e11.5 mouse forebrain
experiment encode accession: ENCSR273UFV
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-05-10
lab: Bing Ren, UCSD
library encode accession: ENCLB477WAK
fragmentation methods: chemical (Nextera tagmentation)
size range: 200-750

value: forebrain

value: Forebrain from 88 embyronic 11.5 day mice

value: pooled male and female

value: ENCBS720JOH at ENCODE; https://www.encodeproject.org/ENCBS720JOH/


title: ATAC-seq from adrenal gland (ENCLB217RTK)

description:
https://www.encodeproject.org/experiments/ENCSR414DVK/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human adrenal gland
experiment encode accession: ENCSR414DVK
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2017-03-09
lab: Michael Snyder, Stanford
library encode accession: ENCLB217RTK
size range: 150-250

organism: Homo sapiens

source_name: Homo sapiens adrenal gland tissue female adult (51 year)

value: adrenal gland

value: female

value: Michael Snyder, Stanford

value: 51 year

value: adult

value: ENCBS055JKA at ENCODE; https://www.encodeproject.org/ENCBS055JKA/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: DNase-seq from heart (ENCLB255IYN)

description:
https://www.encodeproject.org/experiments/ENCSR749ILN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR749ILN
assay title: DNase-seq
assembly: mm10
encode release date: 2017-09-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB255IYN
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

value: heart

value: tissue

value: John Stamatoyannopoulos, UW

value: Mark Groudine

value: ENCBS584LOV at ENCODE; https://www.encodeproject.org/ENCBS584LOV/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ATAC-seq from prostate gland (ENCLB056OWY)

description:
https://www.encodeproject.org/experiments/ENCSR999NKW/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human prostate gland
experiment encode accession: ENCSR999NKW
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2017-06-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB056OWY
size range: 150-250

source_name: Homo sapiens prostate gland tissue male adult (54 years)

value: prostate gland

value: male

value: 54 year

value: ENCBS282GPE at ENCODE; https://www.encodeproject.org/ENCBS282GPE/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: DNase-seq from embryonic facial prominence (ENCLB699GWH)

description:
https://www.encodeproject.org/experiments/ENCSR775YJL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR775YJL
assay title: DNase-seq
assembly: mm10
encode release date: 2017-09-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB699GWH
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Mus musculus strain B6NCrl mixed sex embryo (10.5 days) embryonic facial prominence tissue

value: embryonic facial prominence

value: pooled male and female

value: embryonic

value: ENCBS140IOO at ENCODE; https://www.encodeproject.org/ENCBS140IOO/


title: DNase-seq from embryonic facial prominence (ENCLB349NUP)

description:
https://www.encodeproject.org/experiments/ENCSR775YJL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR775YJL
assay title: DNase-seq
assembly: mm10
encode release date: 2017-09-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB349NUP

value: ENCBS244XEI at ENCODE; https://www.encodeproject.org/ENCBS244XEI/


title: DNase-seq from MCF 10A (ENCLB662JJO)

description:
https://www.encodeproject.org/experiments/ENCSR385SZQ/
***************
biological replicate number: 1
technical replicate number: 1,2
description:
experiment encode accession: ENCSR385SZQ
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2018-01-29
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB662JJO

source_name: Homo sapiens MCF 10A cell line treated with 1 uM tamoxifen for 6 hours

tag: line

value: MCF 10A

value: cell line

value: 1uM Tamoxifen 6 hours, wash out, 18 hours additional

value: female

value: adult

value: 36 year

value: Kevin Struhl

tag: treatments

value: treatment_term_id:CHEBI:41774; treatment_term_name:tamoxifen; treatment_type:chemical; duration:6; duration_units:hour;

value: fibrocystic disease

value: ENCBS317EPD at ENCODE; https://www.encodeproject.org/ENCBS317EPD/

value: Derived from ENCODE donor ENCDO000AAP; https://www.encodeproject.org/ENCDO000AAP/


title: ATAC-seq from esophagus muscularis mucosa (ENCLB464LMC)

description:
https://www.encodeproject.org/experiments/ENCSR609GST/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human esophagus muscularis mucosa
experiment encode accession: ENCSR609GST
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2017-06-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB464LMC
size range: 150-250

source_name: Homo sapiens male adult (54 years) esophagus muscularis mucosa tissue

value: esophagus muscularis mucosa

value: tissue

value: male

value: 54 year

value: Michael Snyder, Stanford

value: Kristin Ardlie

value: ENCBS412WFM at ENCODE; https://www.encodeproject.org/ENCBS412WFM/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ATAC-seq from body of pancreas (ENCLB946AFA)

description:
https://www.encodeproject.org/experiments/ENCSR152PSA/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human body of pancreas
experiment encode accession: ENCSR152PSA
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB946AFA
size range: 150-250

source_name: Homo sapiens body of pancreas tissue male adult (37 years)

value: body of pancreas

value: 37 year

value: ENCBS799DMW at ENCODE; https://www.encodeproject.org/ENCBS799DMW/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: DNase-seq from NAMALWA (ENCLB655XKR)

description:
https://www.encodeproject.org/experiments/ENCSR301OGM/
***************
biological replicate number: 1
technical replicate number: 3,1
description:
experiment encode accession: ENCSR301OGM
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2018-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB655XKR

source_name: Homo sapiens NAMALWA cell line treated with Sendai virus for 2 hours

value: NAMALWA

value: cell line

value: female

value: child

value: 3 year

value: John Stamatoyannopoulos, UW

value: Thomas Montine

value: treatment_term_id:Taxon:11191; treatment_term_name:Sendai virus; treatment_type:infection; duration:2; duration_units:hour;

value: Burkitt's lymphoma

value: ENCBS566UPJ at ENCODE; https://www.encodeproject.org/ENCBS566UPJ/

value: Derived from ENCODE donor ENCDO993XLR; https://www.encodeproject.org/ENCDO993XLR/


title: DNase-seq from NAMALWA (ENCLB494YEV)

description:
https://www.encodeproject.org/experiments/ENCSR301OGM/
***************
biological replicate number: 2
technical replicate number: 1,2
description:
experiment encode accession: ENCSR301OGM
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2018-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB494YEV

value: ENCBS040JOT at ENCODE; https://www.encodeproject.org/ENCBS040JOT/


title: ATAC-seq from frontal cortex (ENCLB601PHH)

description:
https://www.encodeproject.org/experiments/ENCSR889WQX/
***************
biological replicate number: 1
technical replicate number: 1
description: mouse frontal cortex
experiment encode accession: ENCSR889WQX
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-06-21
lab: Barbara Wold, Caltech
library encode accession: ENCLB601PHH
fragmentation methods: chemical (Nextera tagmentation)

source_name: Mus musculus strain B6NCrl adult frontal cortex tissue

value: frontal cortex

value: tissue

value: frontal cortex from 1 mouse (adult 8 month)

value: not collected

value: adult

value: unknown

value: Barbara Wold, Caltech

value: Barbara Wold

value: ENCBS786POK at ENCODE; https://www.encodeproject.org/ENCBS786POK/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: DNase-seq from MCF 10A (ENCLB086WLE)

description:
https://www.encodeproject.org/experiments/ENCSR789VGQ/
***************
biological replicate number: 1
technical replicate number: 1,2
description:
experiment encode accession: ENCSR789VGQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2018-01-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB086WLE

source_name: Homo sapiens MCF 10A cell line

value: MCF 10A

value: cell line

value: female

value: 36 year

value: John Stamatoyannopoulos, UW

value: Kevin Struhl

value: fibrocystic disease

value: ENCBS868SSJ at ENCODE; https://www.encodeproject.org/ENCBS868SSJ/

value: Derived from ENCODE donor ENCDO000AAP; https://www.encodeproject.org/ENCDO000AAP/


title: ATAC-seq from HG03045 (ENCLB516DVB)

description:
https://www.encodeproject.org/experiments/ENCSR249FXU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR249FXU
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-10
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB516DVB
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG03045 cell line

value: HG03045 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: male

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS787ZBX at ENCODE; https://www.encodeproject.org/ENCBS787ZBX/

value: Derived from ENCODE donor ENCDO995KMB; https://www.encodeproject.org/ENCDO995KMB/


title: ATAC-seq from GM21723 (ENCLB688YYP)

description:
https://www.encodeproject.org/experiments/ENCSR233HSC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR233HSC
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB688YYP
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM21723 cell line

value: GM21723 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: adult

value: unknown

value: ENCBS510ZRZ at ENCODE; https://www.encodeproject.org/ENCBS510ZRZ/

value: Derived from ENCODE donor ENCDO468IXT; https://www.encodeproject.org/ENCDO468IXT/


title: DNase-seq from SK-N-DZ (ENCLB340ZYZ)

description:
https://www.encodeproject.org/experiments/ENCSR000FJL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR000FJL
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-09-22
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB340ZYZ
fragmentation methods: see document

source_name: Homo sapiens SK-N-DZ immortalized cell line treated with dimethyl sulfoxide for 72 hours

value: SK-N-DZ

value: cell line

value: 2 year

value: child

value: female

value: treatment_term_id:CHEBI:28262; treatment_term_name:dimethyl sulfoxide; treatment_type:chemical; duration:72; duration_units:hour;

value: ENCBS521AAA at ENCODE; https://www.encodeproject.org/ENCBS521AAA/

value: Derived from ENCODE donor ENCDO340AAA; https://www.encodeproject.org/ENCDO340AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1701; http://web.expasy.org/cellosaurus/CVCL_1701


title: ATAC-seq from body of pancreas (ENCLB820SGQ)

description:
https://www.encodeproject.org/experiments/ENCSR515CDW/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human body of pancreas
experiment encode accession: ENCSR515CDW
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2017-06-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB820SGQ
size range: 150-250

source_name: Homo sapiens body of pancreas tissue female adult (53 years)

value: body of pancreas

value: tissue

value: Michael Snyder, Stanford

value: 53 year

value: ENCBS372UUZ at ENCODE; https://www.encodeproject.org/ENCBS372UUZ/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: DNase-seq from SK-N-DZ (ENCLB339ZYZ)

description:
https://www.encodeproject.org/experiments/ENCSR000FJL/
***************
biological replicate number: 1
technical replicate number: 1,2
description:
experiment encode accession: ENCSR000FJL
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-09-22
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB339ZYZ
fragmentation methods: see document

value: John Stamatoyannopoulos, UW

value: ENCBS520AAA at ENCODE; https://www.encodeproject.org/ENCBS520AAA/


title: ATAC-seq from cerebellum (ENCLB371AUY)

description:
https://www.encodeproject.org/experiments/ENCSR554JQP/
***************
biological replicate number: 2
technical replicate number: 1
description: mouse cerebellum
experiment encode accession: ENCSR554JQP
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-10-09
lab: Barbara Wold, Caltech
library encode accession: ENCLB371AUY
fragmentation methods: chemical (Nextera tagmentation)

source_name: Mus musculus strain B6NCrl adult cerebellum tissue

value: cerebellum

value: cerebellum from 1 mouse (adult 10 months)

value: not collected

value: adult

value: unknown

value: Barbara Wold, Caltech

value: Barbara Wold

value: ENCBS226TAH at ENCODE; https://www.encodeproject.org/ENCBS226TAH/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ATAC-seq from GM19351 (ENCLB489QSG)

description:
https://www.encodeproject.org/experiments/ENCSR231BZU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR231BZU
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB489QSG
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM19351 cell line

value: cell line

value: GM19351 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: female

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS872TWA at ENCODE; https://www.encodeproject.org/ENCBS872TWA/

value: Derived from ENCODE donor ENCDO806NFB; https://www.encodeproject.org/ENCDO806NFB/


title: ATAC-seq from frontal cortex (ENCLB538BIG)

description:
https://www.encodeproject.org/experiments/ENCSR889WQX/
***************
biological replicate number: 2
technical replicate number: 1
description: mouse frontal cortex
experiment encode accession: ENCSR889WQX
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-06-21
lab: Barbara Wold, Caltech
library encode accession: ENCLB538BIG
fragmentation methods: chemical (Nextera tagmentation)

value: frontal cortex

value: tissue

value: frontal cortex from 1 mouse (adult 11 month)

value: ENCBS994XTD at ENCODE; https://www.encodeproject.org/ENCBS994XTD/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB397VCE)

description:
https://www.encodeproject.org/experiments/ENCSR452RAX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR452RAX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB397VCE
instrument models: Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens female adult (37 years) CD4-positive, alpha-beta T primary cell treated with Interleukin-6 for 8 hours

value: CD4-positive, alpha-beta T cell

value: primary cell

value: adult

value: 37 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:UniProtKB:P05231; treatment_term_name:Interleukin-6; treatment_type:protein; duration:8; duration_units:hour;

value: ENCBS220DYF at ENCODE; https://www.encodeproject.org/ENCBS220DYF/

value: Derived from ENCODE donor ENCDO514TDF; https://www.encodeproject.org/ENCDO514TDF/


title: DNase-seq from NCI-H460 (ENCLB334ZYZ)

description:
https://www.encodeproject.org/experiments/ENCSR000FJH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR000FJH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2016-09-22
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB334ZYZ

source_name: Homo sapiens NCI-H460 immortalized cell line

value: cell line

value: male

value: ENCBS515AAA at ENCODE; https://www.encodeproject.org/ENCBS515AAA/

value: Derived from ENCODE donor ENCDO337AAA; https://www.encodeproject.org/ENCDO337AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0459; http://web.expasy.org/cellosaurus/CVCL_0459

value: ATCC sample source; http://www.atcc.org/products/all/HTB-177.aspx


title: DNase-seq from suppressor macrophage (ENCLB626EHN)

description:
https://www.encodeproject.org/experiments/ENCSR011VJK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR011VJK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB626EHN
instrument models: Illumina HiSeq 2000,Illumina HiSeq 4000

source_name: Homo sapiens male adult (24 years) suppressor macrophage primary cell treated with lipopolysaccharide for 1 hour

value: suppressor macrophage

value: 24 year

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:1; duration_units:hour;

value: ENCBS293AYO at ENCODE; https://www.encodeproject.org/ENCBS293AYO/

value: Derived from ENCODE donor ENCDO488BDS; https://www.encodeproject.org/ENCDO488BDS/


title: DNase-seq from MCF 10A (ENCLB997DNA)

description:
https://www.encodeproject.org/experiments/ENCSR752EPH/
***************
biological replicate number: 1
technical replicate number: 1,2
description:
experiment encode accession: ENCSR752EPH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2018-01-29
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB997DNA

source_name: Homo sapiens MCF 10A cell line treated with 1 uM tamoxifen for 24 hours

value: MCF 10A

value: female

value: adult

value: 36 year

value: Kevin Struhl

value: treatment_term_id:CHEBI:41774; treatment_term_name:tamoxifen; treatment_type:chemical; duration:24; duration_units:hour;

value: fibrocystic disease

value: ENCBS417KGL at ENCODE; https://www.encodeproject.org/ENCBS417KGL/

value: Derived from ENCODE donor ENCDO000AAP; https://www.encodeproject.org/ENCDO000AAP/


title: ATAC-seq from cerebellum (ENCLB488NUD)

description:
https://www.encodeproject.org/experiments/ENCSR554JQP/
***************
biological replicate number: 1
technical replicate number: 1
description: mouse cerebellum
experiment encode accession: ENCSR554JQP
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-10-09
lab: Barbara Wold, Caltech
library encode accession: ENCLB488NUD
fragmentation methods: chemical (Nextera tagmentation)

value: cerebellum

value: tissue

value: cerebellum from 1 mouse (adult 8 monthes)

value: not collected

value: unknown

value: Barbara Wold, Caltech

value: Barbara Wold

value: ENCBS586FVL at ENCODE; https://www.encodeproject.org/ENCBS586FVL/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ATAC-seq from GM19455 (ENCLB051WCF)

description:
https://www.encodeproject.org/experiments/ENCSR706GDQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR706GDQ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB051WCF
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM19455 cell line

value: cell line

value: GM19455 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: male

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS493SWN at ENCODE; https://www.encodeproject.org/ENCBS493SWN/

value: Derived from ENCODE donor ENCDO765HXB; https://www.encodeproject.org/ENCDO765HXB/


title: DNase-seq from inflammatory macrophage (ENCLB761CEZ)

description:
https://www.encodeproject.org/experiments/ENCSR226JLK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR226JLK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB761CEZ
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (21 years) inflammatory macrophage primary cell treated with lipopolysaccharide for 4 hours

value: inflammatory macrophage

value: primary cell

value: adult

value: 21 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS866YNO at ENCODE; https://www.encodeproject.org/ENCBS866YNO/

value: Derived from ENCODE donor ENCDO733YAB; https://www.encodeproject.org/ENCDO733YAB/


title: ATAC-seq from GM18517 (ENCLB234NYC)

description:
https://www.encodeproject.org/experiments/ENCSR442OAV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR442OAV
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB234NYC
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM18517 cell line

value: GM18517 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: female

value: unknown

value: ENCBS363LVE at ENCODE; https://www.encodeproject.org/ENCBS363LVE/

value: Derived from ENCODE donor ENCDO394UDJ; https://www.encodeproject.org/ENCDO394UDJ/


title: ATAC-seq from GM18502 (ENCLB885ELZ)

description:
https://www.encodeproject.org/experiments/ENCSR241VGH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR241VGH
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB885ELZ
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM18502 cell line

value: cell line

value: GM18502 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS851RJQ at ENCODE; https://www.encodeproject.org/ENCBS851RJQ/

value: Derived from ENCODE donor ENCDO326KDH; https://www.encodeproject.org/ENCDO326KDH/


title: ATAC-seq from GM18499 (ENCLB586IPF)

description:
https://www.encodeproject.org/experiments/ENCSR700HPA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR700HPA
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB586IPF
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM18499 cell line

value: GM18499 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: adult

value: ENCBS470OKU at ENCODE; https://www.encodeproject.org/ENCBS470OKU/

value: Derived from ENCODE donor ENCDO239IFC; https://www.encodeproject.org/ENCDO239IFC/


title: ATAC-seq from HG03108 (ENCLB336PFU)

description:
https://www.encodeproject.org/experiments/ENCSR962ITF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR962ITF
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB336PFU
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG03108 cell line

value: HG03108 LCLs; Donor from the Esan in Nigeria (ESN)

value: ENCBS148ZWC at ENCODE; https://www.encodeproject.org/ENCBS148ZWC/

value: Derived from ENCODE donor ENCDO406PYC; https://www.encodeproject.org/ENCDO406PYC/


title: DNase-seq from K562 (ENCLB843GMH)

description:
https://www.encodeproject.org/experiments/ENCSR000EOT/
***************
biological replicate number: 1
technical replicate number: 1,2
description: UW human K562 DNase-seq P5 wild type
experiment encode accession: ENCSR000EOT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2018-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB843GMH

source_name: Homo sapiens K562 cell line

extract_protocol: not provided

value: female

value: 53 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: chronic myelogenous leukemia (CML)

value: ENCBS545WKJ at ENCODE; https://www.encodeproject.org/ENCBS545WKJ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ATAC-seq from GM19452 (ENCLB567RZI)

description:
https://www.encodeproject.org/experiments/ENCSR454UTH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR454UTH
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB567RZI
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM19452 cell line

value: cell line

value: GM19452 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: male

value: unknown

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS806OYT at ENCODE; https://www.encodeproject.org/ENCBS806OYT/

value: Derived from ENCODE donor ENCDO876QML; https://www.encodeproject.org/ENCDO876QML/


title: ATAC-seq from GM19463 (ENCLB928JOZ)

description:
https://www.encodeproject.org/experiments/ENCSR712ZRY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR712ZRY
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-10
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB928JOZ
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM19463 cell line

value: GM19463 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: adult

value: ENCBS017DSU at ENCODE; https://www.encodeproject.org/ENCBS017DSU/

value: Derived from ENCODE donor ENCDO917QAZ; https://www.encodeproject.org/ENCDO917QAZ/


title: ATAC-seq from GM21515 (ENCLB797JGI)

description:
https://www.encodeproject.org/experiments/ENCSR960KGO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR960KGO
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB797JGI
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM21515 cell line

value: GM21515 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: ENCBS397SLW at ENCODE; https://www.encodeproject.org/ENCBS397SLW/

value: Derived from ENCODE donor ENCDO807MEJ; https://www.encodeproject.org/ENCDO807MEJ/


title: ATAC-seq from GM21619 (ENCLB258KTE)

description:
https://www.encodeproject.org/experiments/ENCSR214EIV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR214EIV
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB258KTE
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM21619 cell line

value: GM21619 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: ENCBS062HXL at ENCODE; https://www.encodeproject.org/ENCBS062HXL/

value: Derived from ENCODE donor ENCDO236ISC; https://www.encodeproject.org/ENCDO236ISC/


title: ATAC-seq from GM21717 (ENCLB032SXH)

description:
https://www.encodeproject.org/experiments/ENCSR422RPD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR422RPD
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB032SXH
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM21717 cell line

value: cell line

value: GM21717 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: female

value: ENCBS091CWU at ENCODE; https://www.encodeproject.org/ENCBS091CWU/

value: Derived from ENCODE donor ENCDO404YAI; https://www.encodeproject.org/ENCDO404YAI/


title: ATAC-seq from GM21447 (ENCLB325UWQ)

description:
https://www.encodeproject.org/experiments/ENCSR424KQH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR424KQH
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB325UWQ
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM21447 cell line

value: GM21447 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: male

value: unknown

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS959QIZ at ENCODE; https://www.encodeproject.org/ENCBS959QIZ/

value: Derived from ENCODE donor ENCDO735LIL; https://www.encodeproject.org/ENCDO735LIL/


title: DNase-seq from NCI-H460 (ENCLB333ZYZ)

description:
https://www.encodeproject.org/experiments/ENCSR000FJH/
***************
biological replicate number: 1
technical replicate number: 1,2
description:
experiment encode accession: ENCSR000FJH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2016-09-22
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB333ZYZ

value: 37 year

value: adult

value: John Stamatoyannopoulos, UW

value: ENCBS514AAA at ENCODE; https://www.encodeproject.org/ENCBS514AAA/

value: Derived from ENCODE donor ENCDO337AAA; https://www.encodeproject.org/ENCDO337AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0459; http://web.expasy.org/cellosaurus/CVCL_0459


title: ATAC-seq from HG02981 (ENCLB158LWW)

description:
https://www.encodeproject.org/experiments/ENCSR208HAP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR208HAP
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB158LWW
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG02981 cell line

value: cell line

value: HG02981 LCLs; Donor from the Esan in Nigeria (ESN)

value: ENCBS155HKX at ENCODE; https://www.encodeproject.org/ENCBS155HKX/

value: Derived from ENCODE donor ENCDO908EMH; https://www.encodeproject.org/ENCDO908EMH/


title: ATAC-seq from GM18870 (ENCLB866SES)

description:
https://www.encodeproject.org/experiments/ENCSR684KUG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR684KUG
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB866SES
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM18870 cell line

value: GM18870 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: female

value: ENCBS770RCF at ENCODE; https://www.encodeproject.org/ENCBS770RCF/

value: Derived from ENCODE donor ENCDO207EAQ; https://www.encodeproject.org/ENCDO207EAQ/


title: ATAC-seq from HG02870 (ENCLB772NIL)

description:
https://www.encodeproject.org/experiments/ENCSR420RVW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR420RVW
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB772NIL
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG02870 cell line

value: HG02870 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: unknown

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS983PPJ at ENCODE; https://www.encodeproject.org/ENCBS983PPJ/

value: Derived from ENCODE donor ENCDO921ZBU; https://www.encodeproject.org/ENCDO921ZBU/


title: ATAC-seq from HG02588 (ENCLB788KSO)

description:
https://www.encodeproject.org/experiments/ENCSR189VFC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR189VFC
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB788KSO
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG02588 cell line

value: HG02588 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: male

value: adult

value: ENCBS281MYW at ENCODE; https://www.encodeproject.org/ENCBS281MYW/

value: Derived from ENCODE donor ENCDO157KKR; https://www.encodeproject.org/ENCDO157KKR/


title: ATAC-seq from HG03159 (ENCLB814DLO)

description:
https://www.encodeproject.org/experiments/ENCSR940YDN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR940YDN
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB814DLO
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG03159 cell line

value: cell line

value: HG03159 LCLs; Donor from the Esan in Nigeria (ESN)

value: ENCBS182BOZ at ENCODE; https://www.encodeproject.org/ENCBS182BOZ/

value: Derived from ENCODE donor ENCDO740WGW; https://www.encodeproject.org/ENCDO740WGW/


title: ATAC-seq from GM19043 (ENCLB908WMV)

description:
https://www.encodeproject.org/experiments/ENCSR409YCK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR409YCK
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB908WMV
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM19043 cell line

value: GM19043 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: ENCBS539BEG at ENCODE; https://www.encodeproject.org/ENCBS539BEG/

value: Derived from ENCODE donor ENCDO358TTL; https://www.encodeproject.org/ENCDO358TTL/


title: ATAC-seq from HG02678 (ENCLB037USP)

description:
https://www.encodeproject.org/experiments/ENCSR180HEL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR180HEL
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB037USP
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG02678 cell line

value: HG02678 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: unknown

value: ENCBS373UGJ at ENCODE; https://www.encodeproject.org/ENCBS373UGJ/

value: Derived from ENCODE donor ENCDO116OHH; https://www.encodeproject.org/ENCDO116OHH/


title: ATAC-seq from GM19328 (ENCLB303AZY)

description:
https://www.encodeproject.org/experiments/ENCSR383RDZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR383RDZ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB303AZY
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM19328 cell line

value: GM19328 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: female

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS392TNX at ENCODE; https://www.encodeproject.org/ENCBS392TNX/

value: Derived from ENCODE donor ENCDO257EQW; https://www.encodeproject.org/ENCDO257EQW/


title: ATAC-seq from GM21529 (ENCLB359GKL)

description:
https://www.encodeproject.org/experiments/ENCSR954BDA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR954BDA
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB359GKL
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM21529 cell line

value: cell line

value: GM21529 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: adult

value: ENCBS994HTW at ENCODE; https://www.encodeproject.org/ENCBS994HTW/

value: Derived from ENCODE donor ENCDO127JBU; https://www.encodeproject.org/ENCDO127JBU/


title: ATAC-seq from GM21526 (ENCLB243SMV)

description:
https://www.encodeproject.org/experiments/ENCSR408IVU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR408IVU
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB243SMV
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM21526 cell line

value: GM21526 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: ENCBS904JUM at ENCODE; https://www.encodeproject.org/ENCBS904JUM/

value: Derived from ENCODE donor ENCDO825NZI; https://www.encodeproject.org/ENCDO825NZI/


title: ATAC-seq from GM18498 (ENCLB265QMH)

description:
https://www.encodeproject.org/experiments/ENCSR924SDV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR924SDV
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB265QMH
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM18498 cell line

value: GM18498 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: male

value: unknown

value: ENCBS669DHV at ENCODE; https://www.encodeproject.org/ENCBS669DHV/

value: Derived from ENCODE donor ENCDO740YRZ; https://www.encodeproject.org/ENCDO740YRZ/


title: DNase-seq from K562 (ENCLB589SNV)

description:
https://www.encodeproject.org/experiments/ENCSR000EOT/
***************
biological replicate number: 2
technical replicate number: 1
description: UW human K562 DNase-seq P5 wild type
experiment encode accession: ENCSR000EOT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2018-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB589SNV
instrument models: Illumina Genome Analyzer,Illumina HiSeq 2000

source_name: Homo sapiens K562 cell line

value: female

value: 53 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: chronic myelogenous leukemia (CML)

value: ENCBS392ZOW at ENCODE; https://www.encodeproject.org/ENCBS392ZOW/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: DNase-seq from tibial nerve (ENCLB470GUB)

description:
https://www.encodeproject.org/experiments/ENCSR401ESD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR401ESD
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2017-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB470GUB
instrument models: Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens female adult (51 years) tibial nerve tissue

value: tibial nerve

value: tissue

value: adult

value: 51 year

value: Kristin Ardlie

value: ENCBS036BKD at ENCODE; https://www.encodeproject.org/ENCBS036BKD/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ATAC-seq from HG02571 (ENCLB289NML)

description:
https://www.encodeproject.org/experiments/ENCSR400ISH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR400ISH
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB289NML
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG02571 cell line

value: cell line

value: HG02571 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: unknown

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS301TDC at ENCODE; https://www.encodeproject.org/ENCBS301TDC/

value: Derived from ENCODE donor ENCDO933PKK; https://www.encodeproject.org/ENCDO933PKK/


title: ATAC-seq from GM19324 (ENCLB988ZFT)

description:
https://www.encodeproject.org/experiments/ENCSR425WQW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR425WQW
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB988ZFT
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM19324 cell line

value: GM19324 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: female

value: ENCBS122REB at ENCODE; https://www.encodeproject.org/ENCBS122REB/

value: Derived from ENCODE donor ENCDO057UPO; https://www.encodeproject.org/ENCDO057UPO/


title: ATAC-seq from HG03469 (ENCLB194BUL)

description:
https://www.encodeproject.org/experiments/ENCSR163KRG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR163KRG
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB194BUL
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG03469 cell line

value: HG03469 LCLs; Donor from the Mende in Sierra Leone (MSL)

value: male

value: ENCBS322ITX at ENCODE; https://www.encodeproject.org/ENCBS322ITX/

value: Derived from ENCODE donor ENCDO177NIC; https://www.encodeproject.org/ENCDO177NIC/


title: ATAC-seq from HG03025 (ENCLB863TXE)

description:
https://www.encodeproject.org/experiments/ENCSR673ZMQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR673ZMQ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-10
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB863TXE
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG03025 cell line

value: HG03025 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: adult

value: ENCBS171IRO at ENCODE; https://www.encodeproject.org/ENCBS171IRO/

value: Derived from ENCODE donor ENCDO065YPX; https://www.encodeproject.org/ENCDO065YPX/


title: ATAC-seq from HG02938 (ENCLB138NST)

description:
https://www.encodeproject.org/experiments/ENCSR920FQJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR920FQJ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB138NST
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG02938 cell line

value: cell line

value: HG02938 LCLs; Donor from the Esan in Nigeria (ESN)

value: unknown

value: ENCBS479ZVD at ENCODE; https://www.encodeproject.org/ENCBS479ZVD/

value: Derived from ENCODE donor ENCDO839KPP; https://www.encodeproject.org/ENCDO839KPP/


title: ATAC-seq from HG02610 (ENCLB803SNI)

description:
https://www.encodeproject.org/experiments/ENCSR905PWV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR905PWV
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB803SNI
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG02610 cell line

value: HG02610 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS816ZDM at ENCODE; https://www.encodeproject.org/ENCBS816ZDM/

value: Derived from ENCODE donor ENCDO258VYL; https://www.encodeproject.org/ENCDO258VYL/


title: ATAC-seq from GM21528 (ENCLB467TIC)

description:
https://www.encodeproject.org/experiments/ENCSR939EVW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR939EVW
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB467TIC
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM21528 cell line

value: GM21528 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: male

value: ENCBS619PSH at ENCODE; https://www.encodeproject.org/ENCBS619PSH/

value: Derived from ENCODE donor ENCDO095MPC; https://www.encodeproject.org/ENCDO095MPC/


title: ATAC-seq from HG02763 (ENCLB754TXE)

description:
https://www.encodeproject.org/experiments/ENCSR404OEO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR404OEO
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-10
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB754TXE
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG02763 cell line

value: HG02763 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: female

value: adult

value: ENCBS645NZI at ENCODE; https://www.encodeproject.org/ENCBS645NZI/

value: Derived from ENCODE donor ENCDO095LOP; https://www.encodeproject.org/ENCDO095LOP/


title: ATAC-seq from hematopoietic stem cell (ENCLB478MDQ)

description:
https://www.encodeproject.org/experiments/ENCSR453AWR/
***************
biological replicate number: 1
technical replicate number: 1
description: PSU mouse HSC 50,000 cells ATAC-seq
experiment encode accession: ENCSR453AWR
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB478MDQ
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500

source_name: Mus musculus strain C57BL/6J male adult (5-6 weeks) hematopoietic stem primary cell

value: hematopoietic stem cell

value: primary cell

value: Hematopoietic stem cell (HSC)

value: 5-6 week

value: Ross Hardison, PennState

value: David Bodine

value: unknown

value: ENCBS301PDO at ENCODE; https://www.encodeproject.org/ENCBS301PDO/

value: Derived from ENCODE donor ENCDO072AAA; https://www.encodeproject.org/ENCDO072AAA/


title: ATAC-seq from hematopoietic stem cell (ENCLB148VRF)

description:
https://www.encodeproject.org/experiments/ENCSR453AWR/
***************
biological replicate number: 2
technical replicate number: 1
description: PSU mouse HSC 50,000 cells ATAC-seq
experiment encode accession: ENCSR453AWR
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB148VRF
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells

value: male

value: ENCBS075YGO at ENCODE; https://www.encodeproject.org/ENCBS075YGO/


title: ATAC-seq from GM21423 (ENCLB119UKM)

description:
https://www.encodeproject.org/experiments/ENCSR902CFR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR902CFR
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB119UKM
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM21423 cell line

value: cell line

value: GM21423 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS421BIV at ENCODE; https://www.encodeproject.org/ENCBS421BIV/

value: Derived from ENCODE donor ENCDO635HMA; https://www.encodeproject.org/ENCDO635HMA/


title: ATAC-seq from GM18909 (ENCLB666BCI)

description:
https://www.encodeproject.org/experiments/ENCSR917WJS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR917WJS
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB666BCI
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM18909 cell line

value: GM18909 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: female

value: adult

value: ENCBS734LCE at ENCODE; https://www.encodeproject.org/ENCBS734LCE/

value: Derived from ENCODE donor ENCDO059XUW; https://www.encodeproject.org/ENCDO059XUW/


title: ATAC-seq from HG03439 (ENCLB832WTW)

description:
https://www.encodeproject.org/experiments/ENCSR376YMU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR376YMU
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-10
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB832WTW
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG03439 cell line

value: HG03439 LCLs; Donor from the Mende in Sierra Leone (MSL)

value: ENCBS038JHN at ENCODE; https://www.encodeproject.org/ENCBS038JHN/

value: Derived from ENCODE donor ENCDO636RFX; https://www.encodeproject.org/ENCDO636RFX/


title: ATAC-seq from GM19395 (ENCLB089PES)

description:
https://www.encodeproject.org/experiments/ENCSR372IGW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR372IGW
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB089PES
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM19395 cell line

value: GM19395 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: unknown

value: ENCBS298QDA at ENCODE; https://www.encodeproject.org/ENCBS298QDA/

value: Derived from ENCODE donor ENCDO246IOK; https://www.encodeproject.org/ENCDO246IOK/


title: ATAC-seq from megakaryocyte progenitor cell (ENCLB667KAT)

description:
https://www.encodeproject.org/experiments/ENCSR229QKB/
***************
biological replicate number: 1
technical replicate number: 1
description: PSU mouse CFU-M 50,000 cells ATAC-seq
experiment encode accession: ENCSR229QKB
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB667KAT
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500

source_name: Mus musculus strain C57BL/6J male adult (5-6 weeks) megakaryocyte progenitor primary cell

value: megakaryocyte progenitor cell

value: primary cell

value: male

value: 5-6 week

value: Ross Hardison, PennState

value: David Bodine

value: ENCBS040ECE at ENCODE; https://www.encodeproject.org/ENCBS040ECE/

value: Derived from ENCODE donor ENCDO072AAA; https://www.encodeproject.org/ENCDO072AAA/


title: ATAC-seq from GM19025 (ENCLB544BDP)

description:
https://www.encodeproject.org/experiments/ENCSR419UYY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR419UYY
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB544BDP
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM19025 cell line

value: cell line

value: GM19025 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: adult

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS004MHU at ENCODE; https://www.encodeproject.org/ENCBS004MHU/

value: Derived from ENCODE donor ENCDO510QZD; https://www.encodeproject.org/ENCDO510QZD/


title: ATAC-seq from megakaryocyte progenitor cell (ENCLB577TBZ)

description:
https://www.encodeproject.org/experiments/ENCSR229QKB/
***************
biological replicate number: 2
technical replicate number: 1
description: PSU mouse CFU-M 50,000 cells ATAC-seq
experiment encode accession: ENCSR229QKB
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB577TBZ
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells

value: unknown

value: ENCBS453ERE at ENCODE; https://www.encodeproject.org/ENCBS453ERE/


title: ATAC-seq from HG02852 (ENCLB155ICC)

description:
https://www.encodeproject.org/experiments/ENCSR368FYV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR368FYV
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB155ICC
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG02852 cell line

value: HG02852 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: female

value: ENCBS866YWY at ENCODE; https://www.encodeproject.org/ENCBS866YWY/

value: Derived from ENCODE donor ENCDO650SIC; https://www.encodeproject.org/ENCDO650SIC/


title: ATAC-seq from HG03039 (ENCLB220SFB)

description:
https://www.encodeproject.org/experiments/ENCSR381LJX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR381LJX
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-10
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB220SFB
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG03039 cell line

value: HG03039 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: male

value: ENCBS630RUV at ENCODE; https://www.encodeproject.org/ENCBS630RUV/

value: Derived from ENCODE donor ENCDO227PML; https://www.encodeproject.org/ENCDO227PML/


title: ATAC-seq from GM19035 (ENCLB907QJU)

description:
https://www.encodeproject.org/experiments/ENCSR637MUF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR637MUF
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB907QJU
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM19035 cell line

value: cell line

value: GM19035 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: ENCBS102BOL at ENCODE; https://www.encodeproject.org/ENCBS102BOL/

value: Derived from ENCODE donor ENCDO776KEU; https://www.encodeproject.org/ENCDO776KEU/


title: ATAC-seq from GM21825 (ENCLB923IYI)

description:
https://www.encodeproject.org/experiments/ENCSR641KNU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR641KNU
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB923IYI
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM21825 cell line

value: GM21825 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: adult

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS657NWM at ENCODE; https://www.encodeproject.org/ENCBS657NWM/

value: Derived from ENCODE donor ENCDO596HKE; https://www.encodeproject.org/ENCDO596HKE/


title: DNase-seq from ZHBTc4 (ENCLB348RWJ)

description:
https://www.encodeproject.org/experiments/ENCSR434TGY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR434TGY
assay title: DNase-seq
assembly: mm10
encode release date: 2020-07-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB348RWJ
instrument models: Illumina HiSeq 2000,Illumina Genome Analyzer

source_name: Mus musculus strain B6NCrl ZHBTc4 cell line treated with 100 ng/mL doxycycline hyclate for 96 hours

value: not collected

value: unknown

value: John Stamatoyannopoulos, UW

value: The Jackson Laboratory

value: treatment_term_id:CHEBI:34730; treatment_term_name:doxycycline hyclate; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS963UJG at ENCODE; https://www.encodeproject.org/ENCBS963UJG/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ATAC-seq from G1E-ER4 (ENCLB025IJK)

description:
https://www.encodeproject.org/experiments/ENCSR428BSK/
***************
biological replicate number: 1
technical replicate number: 1
description: PSU mouse G1E-ER4+E2 50,000 cells ATAC-seq
experiment encode accession: ENCSR428BSK
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB025IJK
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells

source_name: Mus musculus strain C57BL/6J G1E-ER4 cell line treated with 10 nM 17Beta-estradiol for 24 hours

value: cell line

value: Gata1 restored erythroid cells, differentiation induced by estradiol (E2)

value: male

value: postnatal

value: 0 day

value: Ross Hardison, PennState

value: Unknown Source

value: treatment_term_id:CHEBI:16469; treatment_term_name:17Beta-estradiol; treatment_type:chemical; duration:24; duration_units:hour; UCSC-ENCODE-cv:diffProtD_24hr;

value: ENCBS840HQL at ENCODE; https://www.encodeproject.org/ENCBS840HQL/

value: Derived from ENCODE donor ENCDO072AAA; https://www.encodeproject.org/ENCDO072AAA/


title: ATAC-seq from common myeloid progenitor (ENCLB897KAA)

description:
https://www.encodeproject.org/experiments/ENCSR914PYX/
***************
biological replicate number: 2
technical replicate number: 1
description: PSU mouse CMP 50,000 cells ATAC-seq
experiment encode accession: ENCSR914PYX
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB897KAA
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells

source_name: Mus musculus strain C57BL/6J male adult (5-6 weeks) common myeloid progenitor primary cell

value: common myeloid progenitor

value: primary cell

value: adult

value: 5-6 week

value: David Bodine

value: ENCBS368RVN at ENCODE; https://www.encodeproject.org/ENCBS368RVN/


title: ATAC-seq from common myeloid progenitor (ENCLB182ZZO)

description:
https://www.encodeproject.org/experiments/ENCSR914PYX/
***************
biological replicate number: 1
technical replicate number: 1
description: PSU mouse CMP 50,000 cells ATAC-seq
experiment encode accession: ENCSR914PYX
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB182ZZO
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500

value: unknown

value: ENCBS221ZGT at ENCODE; https://www.encodeproject.org/ENCBS221ZGT/


title: ATAC-seq from GM19468 (ENCLB998IGQ)

description:
https://www.encodeproject.org/experiments/ENCSR635AIF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR635AIF
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB998IGQ
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM19468 cell line

value: cell line

value: GM19468 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: female

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS964GOV at ENCODE; https://www.encodeproject.org/ENCBS964GOV/

value: Derived from ENCODE donor ENCDO731HIP; https://www.encodeproject.org/ENCDO731HIP/


title: ATAC-seq from HG02759 (ENCLB181RBO)

description:
https://www.encodeproject.org/experiments/ENCSR144ZXR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR144ZXR
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB181RBO
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG02759 cell line

value: HG02759 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: male

value: ENCBS103BCS at ENCODE; https://www.encodeproject.org/ENCBS103BCS/

value: Derived from ENCODE donor ENCDO810YDX; https://www.encodeproject.org/ENCDO810YDX/


title: ATAC-seq from G1E-ER4 (ENCLB059TNV)

description:
https://www.encodeproject.org/experiments/ENCSR428BSK/
***************
biological replicate number: 2
technical replicate number: 1
description: PSU mouse G1E-ER4+E2 50,000 cells ATAC-seq
experiment encode accession: ENCSR428BSK
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB059TNV
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells

value: Gata1 restored erythroid cells, differentiation induced by estradiol (E2)

value: postnatal

value: 0 day

value: Ross Hardison, PennState

value: Unknown Source

value: treatment_term_id:CHEBI:16469; treatment_term_name:17Beta-estradiol; treatment_type:chemical; duration:24; duration_units:hour; UCSC-ENCODE-cv:diffProtD_24hr;

value: ENCBS529DMU at ENCODE; https://www.encodeproject.org/ENCBS529DMU/

value: Derived from ENCODE donor ENCDO072AAA; https://www.encodeproject.org/ENCDO072AAA/


title: DNase-seq from R1 (ENCLB098ARO)

description:
https://www.encodeproject.org/experiments/ENCSR319PWR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR319PWR
assay title: DNase-seq
assembly: mm10
encode release date: 2018-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB098ARO

source_name: Mus musculus strain C57BL/6J R1 cell line

value: cell line

value: not collected

value: embryonic

value: unknown

value: John Stamatoyannopoulos, UW

value: ENCBS054ZRK at ENCODE; https://www.encodeproject.org/ENCBS054ZRK/


title: ATAC-seq from HG03442 (ENCLB705UKX)

description:
https://www.encodeproject.org/experiments/ENCSR858GTE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR858GTE
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB705UKX
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG03442 cell line

value: HG03442 LCLs; Donor from the Mende in Sierra Leone (MSL)

value: male

value: adult

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS186QMI at ENCODE; https://www.encodeproject.org/ENCBS186QMI/

value: Derived from ENCODE donor ENCDO830RWV; https://www.encodeproject.org/ENCDO830RWV/


title: ATAC-seq from erythroid progenitor cell (ENCLB430KLB)

description:
https://www.encodeproject.org/experiments/ENCSR136XSY/
***************
biological replicate number: 2
technical replicate number: 1
description: PSU mouse CFU-E 50,000 cells ATAC-seq
experiment encode accession: ENCSR136XSY
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB430KLB
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells

source_name: Mus musculus strain C57BL/6J male adult (5-6 weeks) erythroid progenitor primary cell

value: erythroid progenitor cell

value: primary cell

value: 5-6 week

value: Ross Hardison, PennState

value: David Bodine

value: ENCBS631ECT at ENCODE; https://www.encodeproject.org/ENCBS631ECT/


title: ATAC-seq from erythroblast (ENCLB228WLV)

description:
https://www.encodeproject.org/experiments/ENCSR793RAV/
***************
biological replicate number: 2
technical replicate number: 1
description: PSU mouse Erythroblast 50,000 cells ATAC-seq
experiment encode accession: ENCSR793RAV
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB228WLV
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500

source_name: Mus musculus strain C57BL/6J male adult (5-6 weeks) erythroblast primary cell

value: erythroblast

value: ENCBS739XQL at ENCODE; https://www.encodeproject.org/ENCBS739XQL/

value: Derived from ENCODE donor ENCDO072AAA; https://www.encodeproject.org/ENCDO072AAA/


title: ATAC-seq from hematopoietic stem cell (ENCLB242XPG)

description:
https://www.encodeproject.org/experiments/ENCSR366VBB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR366VBB
assay title: ATAC-seq
assembly: mm10
encode release date: 2017-11-15
lab: Ross Hardison, PennState
library encode accession: ENCLB242XPG

source_name: Mus musculus strain C57BL/6J adult (5-6 weeks) hematopoietic stem primary cell

value: hematopoietic stem cell

value: Hematopoietic stem cell (HSC)

value: not collected

value: unknown

value: ENCBS149HMM at ENCODE; https://www.encodeproject.org/ENCBS149HMM/


title: ATAC-seq from GM18508 (ENCLB523QER)

description:
https://www.encodeproject.org/experiments/ENCSR357WQH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR357WQH
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB523QER
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM18508 cell line

value: cell line

value: GM18508 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: female

value: adult

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS430CQD at ENCODE; https://www.encodeproject.org/ENCBS430CQD/

value: Derived from ENCODE donor ENCDO792AYC; https://www.encodeproject.org/ENCDO792AYC/


title: ATAC-seq from HG03520 (ENCLB551YOT)

description:
https://www.encodeproject.org/experiments/ENCSR624CTU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR624CTU
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB551YOT
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG03520 cell line

value: HG03520 LCLs; Donor from the Esan in Nigeria (ESN)

value: ENCBS918VPJ at ENCODE; https://www.encodeproject.org/ENCBS918VPJ/

value: Derived from ENCODE donor ENCDO260ZRE; https://www.encodeproject.org/ENCDO260ZRE/


title: ATAC-seq from GM19438 (ENCLB957DJP)

description:
https://www.encodeproject.org/experiments/ENCSR134OSR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR134OSR
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB957DJP
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM19438 cell line

value: GM19438 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: ENCBS902ITG at ENCODE; https://www.encodeproject.org/ENCBS902ITG/

value: Derived from ENCODE donor ENCDO098MAZ; https://www.encodeproject.org/ENCDO098MAZ/


title: ATAC-seq from GM19467 (ENCLB556DHZ)

description:
https://www.encodeproject.org/experiments/ENCSR635CAC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR635CAC
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB556DHZ
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM19467 cell line

value: GM19467 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: ENCBS329UGW at ENCODE; https://www.encodeproject.org/ENCBS329UGW/

value: Derived from ENCODE donor ENCDO514AGP; https://www.encodeproject.org/ENCDO514AGP/


title: ATAC-seq from erythroid progenitor cell (ENCLB367TWL)

description:
https://www.encodeproject.org/experiments/ENCSR136XSY/
***************
biological replicate number: 1
technical replicate number: 1
description: PSU mouse CFU-E 50,000 cells ATAC-seq
experiment encode accession: ENCSR136XSY
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB367TWL
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500

value: erythroid progenitor cell

value: primary cell

value: male

value: 5-6 week

value: Ross Hardison, PennState

value: David Bodine

value: unknown

value: ENCBS842ORQ at ENCODE; https://www.encodeproject.org/ENCBS842ORQ/

value: Derived from ENCODE donor ENCDO072AAA; https://www.encodeproject.org/ENCDO072AAA/


title: ATAC-seq from erythroblast (ENCLB986ZTD)

description:
https://www.encodeproject.org/experiments/ENCSR793RAV/
***************
biological replicate number: 1
technical replicate number: 1
description: PSU mouse Erythroblast 50,000 cells ATAC-seq
experiment encode accession: ENCSR793RAV
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB986ZTD
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells

value: erythroblast

value: adult

value: ENCBS258FLT at ENCODE; https://www.encodeproject.org/ENCBS258FLT/


title: ATAC-seq from megakaryocyte-erythroid progenitor cell (ENCLB398NWK)

description:
https://www.encodeproject.org/experiments/ENCSR064IHX/
***************
biological replicate number: 1
technical replicate number: 1
description: PSU mouse MEP 50,000 cells ATAC-seq
experiment encode accession: ENCSR064IHX
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB398NWK
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500

source_name: Mus musculus strain C57BL/6J male adult (5-6 weeks) megakaryocyte-erythroid progenitor primary cell

value: megakaryocyte-erythroid progenitor cell

value: ENCBS252MYN at ENCODE; https://www.encodeproject.org/ENCBS252MYN/


title: ATAC-seq from GM18861 (ENCLB005EUZ)

description:
https://www.encodeproject.org/experiments/ENCSR628PLS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR628PLS
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB005EUZ
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM18861 cell line

value: cell line

value: GM18861 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: female

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS718CIS at ENCODE; https://www.encodeproject.org/ENCBS718CIS/

value: Derived from ENCODE donor ENCDO022XXF; https://www.encodeproject.org/ENCDO022XXF/


title: ATAC-seq from HG02970 (ENCLB026FKN)

description:
https://www.encodeproject.org/experiments/ENCSR857MCZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR857MCZ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB026FKN
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG02970 cell line

value: HG02970 LCLs; Donor from the Esan in Nigeria (ESN)

value: ENCBS998ZPG at ENCODE; https://www.encodeproject.org/ENCBS998ZPG/

value: Derived from ENCODE donor ENCDO852FCI; https://www.encodeproject.org/ENCDO852FCI/


title: ATAC-seq from G1E (ENCLB427FAG)

description:
https://www.encodeproject.org/experiments/ENCSR280ZDP/
***************
biological replicate number: 1
technical replicate number: 1
description: PSU mouse G1E 50,000 cells ATAC-seq
experiment encode accession: ENCSR280ZDP
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB427FAG
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells

source_name: Mus musculus strain C57BL/6J G1E cell line

value: Gata1- erythroid progenitor

value: male

value: postnatal

value: 0 day

value: Ross Hardison, PennState

value: Unknown Source

value: ENCBS566SQH at ENCODE; https://www.encodeproject.org/ENCBS566SQH/


title: ATAC-seq from G1E (ENCLB898MFQ)

description:
https://www.encodeproject.org/experiments/ENCSR280ZDP/
***************
biological replicate number: 2
technical replicate number: 1
description: PSU mouse G1E 50,000 cells ATAC-seq
experiment encode accession: ENCSR280ZDP
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB898MFQ
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells

value: cell line

value: ENCBS431QXW at ENCODE; https://www.encodeproject.org/ENCBS431QXW/

value: Derived from ENCODE donor ENCDO072AAA; https://www.encodeproject.org/ENCDO072AAA/


title: ATAC-seq from GM21576 (ENCLB239KAZ)

description:
https://www.encodeproject.org/experiments/ENCSR122NDR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR122NDR
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB239KAZ
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM21576 cell line

value: GM21576 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: female

value: adult

value: unknown

value: Stephen Montgomery, Stanford

value: ENCBS793OSQ at ENCODE; https://www.encodeproject.org/ENCBS793OSQ/

value: Derived from ENCODE donor ENCDO044UFV; https://www.encodeproject.org/ENCDO044UFV/


title: ATAC-seq from HG02943 (ENCLB143PIZ)

description:
https://www.encodeproject.org/experiments/ENCSR123WME/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR123WME
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB143PIZ
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG02943 cell line

value: HG02943 LCLs; Donor from the Esan in Nigeria (ESN)

value: Coriell

value: ENCBS899YBP at ENCODE; https://www.encodeproject.org/ENCBS899YBP/

value: Derived from ENCODE donor ENCDO610AIZ; https://www.encodeproject.org/ENCDO610AIZ/


title: ATAC-seq from HG02840 (ENCLB872OZL)

description:
https://www.encodeproject.org/experiments/ENCSR854ZBA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR854ZBA
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB872OZL
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG02840 cell line

value: HG02840 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: ENCBS575UUQ at ENCODE; https://www.encodeproject.org/ENCBS575UUQ/

value: Derived from ENCODE donor ENCDO021AFR; https://www.encodeproject.org/ENCDO021AFR/


title: ATAC-seq from megakaryocyte (ENCLB313GIY)

description:
https://www.encodeproject.org/experiments/ENCSR498DQA/
***************
biological replicate number: 1
technical replicate number: 1
description: PSU mouse Megakaryocyte 50,000 cells ATAC-seq
experiment encode accession: ENCSR498DQA
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB313GIY
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells

source_name: Mus musculus strain C57BL/6J male adult (5-6 weeks) megakaryocyte primary cell

value: megakaryocyte

value: primary cell

value: male

value: 5-6 week

value: Ross Hardison, PennState

value: David Bodine

value: ENCBS896DRT at ENCODE; https://www.encodeproject.org/ENCBS896DRT/


title: ATAC-seq from HG02885 (ENCLB793IOD)

description:
https://www.encodeproject.org/experiments/ENCSR621JYI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR621JYI
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB793IOD
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG02885 cell line

value: cell line

value: HG02885 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: female

value: adult

value: unknown

value: Stephen Montgomery, Stanford

value: ENCBS167GJW at ENCODE; https://www.encodeproject.org/ENCBS167GJW/

value: Derived from ENCODE donor ENCDO772WHN; https://www.encodeproject.org/ENCDO772WHN/


title: ATAC-seq from GM21360 (ENCLB454KGD)

description:
https://www.encodeproject.org/experiments/ENCSR105SCQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR105SCQ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-10
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB454KGD
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens GM21360 cell line

value: GM21360 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: Coriell

value: ENCBS084XDW at ENCODE; https://www.encodeproject.org/ENCBS084XDW/

value: Derived from ENCODE donor ENCDO503BYG; https://www.encodeproject.org/ENCDO503BYG/


title: ATAC-seq from granulocyte monocyte progenitor cell (ENCLB903ZWV)

description:
https://www.encodeproject.org/experiments/ENCSR257PGU/
***************
biological replicate number: 2
technical replicate number: 1
description: PSU mouse GMP 50,000 cells ATAC-seq
experiment encode accession: ENCSR257PGU
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB903ZWV
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells

source_name: Mus musculus strain C57BL/6J male adult (5-6 weeks) granulocyte monocyte progenitor primary cell

value: granulocyte monocyte progenitor cell

value: primary cell

value: granulocyte monocyte progenitor

value: male

value: ENCBS144DIM at ENCODE; https://www.encodeproject.org/ENCBS144DIM/

value: Derived from ENCODE donor ENCDO072AAA; https://www.encodeproject.org/ENCDO072AAA/


title: ATAC-seq from HG03432 (ENCLB149ECG)

description:
https://www.encodeproject.org/experiments/ENCSR839UOB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR839UOB
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB149ECG
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG03432 cell line

value: cell line

value: HG03432 LCLs; Donor from the Mende in Sierra Leone (MSL)

value: ENCBS218AUL at ENCODE; https://www.encodeproject.org/ENCBS218AUL/

value: Derived from ENCODE donor ENCDO967XPT; https://www.encodeproject.org/ENCDO967XPT/


title: ATAC-seq from megakaryocyte-erythroid progenitor cell (ENCLB094NVU)

description:
https://www.encodeproject.org/experiments/ENCSR064IHX/
***************
biological replicate number: 2
technical replicate number: 1
description: PSU mouse MEP 50,000 cells ATAC-seq
experiment encode accession: ENCSR064IHX
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB094NVU
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells

value: megakaryocyte-erythroid progenitor cell

value: adult

value: 5-6 week

value: Ross Hardison, PennState

value: David Bodine

value: unknown

value: ENCBS946UTD at ENCODE; https://www.encodeproject.org/ENCBS946UTD/


title: ATAC-seq from granulocyte monocyte progenitor cell (ENCLB343DOZ)

description:
https://www.encodeproject.org/experiments/ENCSR257PGU/
***************
biological replicate number: 1
technical replicate number: 1
description: PSU mouse GMP 50,000 cells ATAC-seq
experiment encode accession: ENCSR257PGU
assay title: ATAC-seq
assembly: mm10
encode release date: 2016-03-30
lab: Ross Hardison, PennState
library encode accession: ENCLB343DOZ
nucleic acid starting quantity: 50000
nucleic acid starting quantity units: cells
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500

value: granulocyte monocyte progenitor cell

value: ENCBS360KWM at ENCODE; https://www.encodeproject.org/ENCBS360KWM/


title: ATAC-seq from HG03139 (ENCLB607PAZ)

description:
https://www.encodeproject.org/experiments/ENCSR615YIL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR615YIL
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-02-11
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB607PAZ
fragmentation methods: chemical (Tn5 transposase)

source_name: Homo sapiens HG03139 cell line

value: HG03139 LCLs; Donor from the Esan in Nigeria (ESN)

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS174WCF at ENCODE; https://www.encodeproject.org/ENCBS174WCF/

value: Derived from ENCODE donor ENCDO021JCP; https://www.encodeproject.org/ENCDO021JCP/