title: ATAC-seq from heart left ventricle (ENCLB332HEY)

description:
https://www.encodeproject.org/experiments/ENCSR117PYB/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human heart left ventricle
experiment encode accession: ENCSR117PYB
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2017-01-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB332HEY
size range: 150-250

source_name: Homo sapiens heart left ventricle tissue female adult (51 year)

value: heart left ventricle

value: tissue

value: Michael Snyder, Stanford

value: 51 year

value: ENCBS410KPZ at ENCODE; https://www.encodeproject.org/ENCBS410KPZ/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ATAC-seq from stomach (ENCLB984LIW)

status: Public on Apr 22 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR851SBY/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human stomach
experiment encode accession: ENCSR851SBY
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB984LIW
size range: 150-250

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens stomach tissue male adult (54 years)

value: stomach

tag: biosample encode accession

tag: Sex

value: male

tag: lab

tag: age

value: 54 year

tag: dev stage

value: adult

tag: link

value: ENCBS424ANS at ENCODE; https://www.encodeproject.org/ENCBS424ANS/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ATAC-seq from sigmoid colon (ENCLB998DKY)

description:
https://www.encodeproject.org/experiments/ENCSR355SGJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human sigmoid colon
experiment encode accession: ENCSR355SGJ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB998DKY
size range: 150-250

source_name: Homo sapiens sigmoid colon tissue female adult (51 year)

value: sigmoid colon

value: female

value: ENCBS214RWK at ENCODE; https://www.encodeproject.org/ENCBS214RWK/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB932XKX)

description:
https://www.encodeproject.org/experiments/ENCSR111WTE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR111WTE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB932XKX

source_name: Homo sapiens female adult (26 years) CD4-positive, alpha-beta T primary cell treated with Interferon alpha-2 for 1 hour

value: CD4-positive, alpha-beta T cell

value: primary cell

tag: description

value: 26 year

value: John Stamatoyannopoulos, UW

tag: source

value: Shelly Heimfeld

tag: treatments

value: treatment_term_id:UniProtKB:P01563; treatment_term_name:Interferon alpha-2; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS696BAY at ENCODE; https://www.encodeproject.org/ENCBS696BAY/

value: Derived from ENCODE donor ENCDO134JGU; https://www.encodeproject.org/ENCDO134JGU/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB058GRM)

description:
https://www.encodeproject.org/experiments/ENCSR618HFT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR618HFT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB058GRM

source_name: Homo sapiens male adult (42 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour

value: 42 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P01375; treatment_term_name:TNF-alpha; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS260BWC at ENCODE; https://www.encodeproject.org/ENCBS260BWC/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB093XCH)

description:
https://www.encodeproject.org/experiments/ENCSR111WTE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR111WTE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB093XCH

source_name: Homo sapiens female adult (39 years) CD4-positive, alpha-beta T primary cell treated with Interferon alpha-2 for 1 hour

value: adult

value: 39 year

value: ENCBS110WWY at ENCODE; https://www.encodeproject.org/ENCBS110WWY/

value: Derived from ENCODE donor ENCDO222BBW; https://www.encodeproject.org/ENCDO222BBW/


title: ATAC-seq from heart left ventricle (ENCLB353YOY)

description:
https://www.encodeproject.org/experiments/ENCSR851EBF/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human heart left ventricle
experiment encode accession: ENCSR851EBF
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB353YOY
size range: 150-250

source_name: Homo sapiens heart left ventricle tissue female adult (53 years)

value: heart left ventricle

value: tissue

value: female

value: Michael Snyder, Stanford

value: 53 year

value: ENCBS106FXL at ENCODE; https://www.encodeproject.org/ENCBS106FXL/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB267WIM)

description:
https://www.encodeproject.org/experiments/ENCSR841UCZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR841UCZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB267WIM

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour

value: primary cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS176JOP at ENCODE; https://www.encodeproject.org/ENCBS176JOP/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB702SHT)

description:
https://www.encodeproject.org/experiments/ENCSR616AEG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR616AEG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB702SHT

source_name: Homo sapiens female adult (33 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours

value: adult

value: 33 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P29460; treatment_term_name:Interleukin-12 subunit beta; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS685LBH at ENCODE; https://www.encodeproject.org/ENCBS685LBH/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: DNase-seq from GM23338 (ENCLB779DHF)

description:
https://www.encodeproject.org/experiments/ENCSR108PUO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR108PUO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-02-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB779DHF

source_name: Homo sapiens GM23338 cell line

tag: line

value: cell line

value: Bradley Bernstein

value: ENCBS365ZAF at ENCODE; https://www.encodeproject.org/ENCBS365ZAF/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB927EDZ)

description:
https://www.encodeproject.org/experiments/ENCSR107XZC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR107XZC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB927EDZ

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours

value: primary cell

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS479KQQ at ENCODE; https://www.encodeproject.org/ENCBS479KQQ/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB718QSG)

description:
https://www.encodeproject.org/experiments/ENCSR840QLA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR840QLA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB718QSG

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P01375; treatment_term_name:TNF-alpha; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS021MUK at ENCODE; https://www.encodeproject.org/ENCBS021MUK/


title: DNase-seq from CD4-positive naive resting alpha-beta T cell (ENCLB904DAT)

description:
https://www.encodeproject.org/experiments/ENCSR100OSB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR100OSB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB904DAT

source_name: Homo sapiens male adult (42 years) CD4-positive naive resting alpha-beta T primary cell treated with 50 U/mL Interleukin-2 for 16 hours

value: adult

value: 42 year

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS503GGW at ENCODE; https://www.encodeproject.org/ENCBS503GGW/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB338XQE)

description:
https://www.encodeproject.org/experiments/ENCSR607HIL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR607HIL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB338XQE

source_name: Homo sapiens female adult (33 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours

value: female

value: 33 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS766UIZ at ENCODE; https://www.encodeproject.org/ENCBS766UIZ/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB557GYE)

description:
https://www.encodeproject.org/experiments/ENCSR605SQL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR605SQL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB557GYE

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours

value: primary cell

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:Q9NPF7; treatment_term_name:Interleukin-23; treatment_type:protein; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P01584; treatment_term_name:Interleukin-1b; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS461JKM at ENCODE; https://www.encodeproject.org/ENCBS461JKM/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from gamma-delta T cell (ENCLB435IZS)

description:
https://www.encodeproject.org/experiments/ENCSR104QUE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR104QUE
assay title: DNase-seq
assembly: GRCh38
possible controls: ENCSR676GAW
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB435IZS

source_name: Homo sapiens female adult (33 years) gamma-delta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours

value: gamma-delta T cell

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:16; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS643OUH at ENCODE; https://www.encodeproject.org/ENCBS643OUH/


title: DNase-seq from activated T-cell (ENCLB264RYA)

description:
https://www.encodeproject.org/experiments/ENCSR617NTY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR617NTY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB264RYA

source_name: Homo sapiens male adult (38 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour

value: activated T-cell

value: male

value: adult

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS241DAN at ENCODE; https://www.encodeproject.org/ENCBS241DAN/


title: DNase-seq from activated T-cell (ENCLB938RAL)

description:
https://www.encodeproject.org/experiments/ENCSR343MCI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR343MCI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB938RAL

source_name: Homo sapiens female adult (33 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour

value: female

value: 33 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS789CIK at ENCODE; https://www.encodeproject.org/ENCBS789CIK/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB504NXN)

description:
https://www.encodeproject.org/experiments/ENCSR604FER/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR604FER
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB504NXN

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours

value: primary cell

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour;

value: ENCBS944VVH at ENCODE; https://www.encodeproject.org/ENCBS944VVH/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB477YAP)

description:
https://www.encodeproject.org/experiments/ENCSR336QAO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR336QAO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB477YAP

source_name: Homo sapiens female adult (26 years) CD4-positive, alpha-beta T primary cell treated with Interferon gamma for 1 hour

value: CD4-positive, alpha-beta T cell

value: 26 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:UniProtKB:P01579; treatment_term_name:Interferon gamma; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS208SUF at ENCODE; https://www.encodeproject.org/ENCBS208SUF/

value: Derived from ENCODE donor ENCDO134JGU; https://www.encodeproject.org/ENCDO134JGU/


title: ATAC-seq from tibial nerve (ENCLB603TGS)

description:
https://www.encodeproject.org/experiments/ENCSR831KAH/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human tibial nerve
experiment encode accession: ENCSR831KAH
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2017-06-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB603TGS
size range: 150-250

source_name: Homo sapiens tibial nerve tissue female adult (51 year)

value: tibial nerve

value: tissue

value: Michael Snyder, Stanford

value: 51 year

value: adult

value: ENCBS689AWK at ENCODE; https://www.encodeproject.org/ENCBS689AWK/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB601GED)

description:
https://www.encodeproject.org/experiments/ENCSR832THJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR832THJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB601GED

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours

value: primary cell

value: female

value: 33 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS762ARN at ENCODE; https://www.encodeproject.org/ENCBS762ARN/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: DNase-seq from neural crest cell (ENCLB935OUX)

description:
https://www.encodeproject.org/experiments/ENCSR826URD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR826URD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-02-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB935OUX

source_name: Homo sapiens female embryo (5 days) neural crest in vitro differentiated cells

value: neural crest cell

value: in vitro differentiated cells

value: embryonic

value: 5 day

value: John Stamatoyannopoulos, UW

value: Bradley Bernstein

tag: health state

value: healthy

value: ENCBS949IAC at ENCODE; https://www.encodeproject.org/ENCBS949IAC/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ATAC-seq from esophagus squamous epithelium (ENCLB105YTZ)

description:
https://www.encodeproject.org/experiments/ENCSR096BPX/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human esophagus squamous epithelium
experiment encode accession: ENCSR096BPX
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2017-06-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB105YTZ
size range: 150-250

source_name: Homo sapiens esophagus squamous epithelium tissue female adult (51 year)

value: esophagus squamous epithelium

value: tissue

value: Michael Snyder, Stanford

value: 51 year

value: adult

value: ENCBS969YPI at ENCODE; https://www.encodeproject.org/ENCBS969YPI/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB717YHI)

description:
https://www.encodeproject.org/experiments/ENCSR840USW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR840USW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB717YHI

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours

value: primary cell

value: male

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS513BQE at ENCODE; https://www.encodeproject.org/ENCBS513BQE/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB196ZOC)

description:
https://www.encodeproject.org/experiments/ENCSR335EYA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR335EYA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB196ZOC

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-12 subunit alpha for 1 hour, 100 ng/mL Interleukin-12 subunit beta for 1 hour

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P29460; treatment_term_name:Interleukin-12 subunit beta; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS953JGJ at ENCODE; https://www.encodeproject.org/ENCBS953JGJ/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB318GHI)

description:
https://www.encodeproject.org/experiments/ENCSR335LOQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR335LOQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB318GHI

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P13232; treatment_term_name:Interleukin-7; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS885UHK at ENCODE; https://www.encodeproject.org/ENCBS885UHK/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB560PKL)

description:
https://www.encodeproject.org/experiments/ENCSR324OTS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR324OTS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB560PKL

source_name: Homo sapiens female adult (39 years) CD4-positive, alpha-beta T primary cell treated with 100 ng/mL Interleukin-2 for 4 hours

value: CD4-positive, alpha-beta T cell

value: female

value: 39 year

value: Shelly Heimfeld

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS016JJR at ENCODE; https://www.encodeproject.org/ENCBS016JJR/

value: Derived from ENCODE donor ENCDO222BBW; https://www.encodeproject.org/ENCDO222BBW/


title: ATAC-seq from gastrocnemius medialis (ENCLB716UXI)

description:
https://www.encodeproject.org/experiments/ENCSR823ZCR/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human gastrocnemius medialis
experiment encode accession: ENCSR823ZCR
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB716UXI
size range: 150-250

source_name: Homo sapiens gastrocnemius medialis tissue female adult (51 year)

value: gastrocnemius medialis

value: tissue

value: Michael Snyder, Stanford

value: 51 year

value: adult

value: ENCBS668EWD at ENCODE; https://www.encodeproject.org/ENCBS668EWD/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB231AOJ)

description:
https://www.encodeproject.org/experiments/ENCSR324SGE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR324SGE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB231AOJ

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours

value: primary cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS481FUJ at ENCODE; https://www.encodeproject.org/ENCBS481FUJ/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB684PXA)

description:
https://www.encodeproject.org/experiments/ENCSR323PWV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR323PWV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB684PXA

source_name: Homo sapiens male adult (42 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours

value: 42 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9NPF7; treatment_term_name:Interleukin-23; treatment_type:protein; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P01584; treatment_term_name:Interleukin-1b; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS426AZC at ENCODE; https://www.encodeproject.org/ENCBS426AZC/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB156GTB)

description:
https://www.encodeproject.org/experiments/ENCSR323TXQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR323TXQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB156GTB

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours

value: ENCBS540NKD at ENCODE; https://www.encodeproject.org/ENCBS540NKD/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB471PLO)

description:
https://www.encodeproject.org/experiments/ENCSR315WAC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR315WAC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB471PLO

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS812TSZ at ENCODE; https://www.encodeproject.org/ENCBS812TSZ/


title: DNase-seq from CD4-positive naive resting alpha-beta T cell (ENCLB119FLC)

description:
https://www.encodeproject.org/experiments/ENCSR593OUE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR593OUE
assay title: DNase-seq
assembly: GRCh38
possible controls: ENCSR100OSB
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB119FLC

source_name: Homo sapiens male adult (42 years) CD4-positive naive resting alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours

value: adult

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:16; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS605OVJ at ENCODE; https://www.encodeproject.org/ENCBS605OVJ/


title: DNase-seq from T-helper 1 cell (ENCLB711ZEX)

description:
https://www.encodeproject.org/experiments/ENCSR595THL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR595THL
assay title: DNase-seq
assembly: GRCh38
possible controls: ENCSR635QIZ
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB711ZEX

source_name: Homo sapiens female adult (33 years) T-helper 1 primary cell treated with anti-CD3 and anti-CD28 coated beads for 16 hours

value: T-helper 1 cell

value: primary cell

value: female

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:16; duration_units:hour;

value: ENCBS070SAG at ENCODE; https://www.encodeproject.org/ENCBS070SAG/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: ATAC-seq from sigmoid colon (ENCLB753COG)

description:
https://www.encodeproject.org/experiments/ENCSR086OGH/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human sigmoid colon
experiment encode accession: ENCSR086OGH
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB753COG
size range: 150-250

source_name: Homo sapiens sigmoid colon tissue male adult (54 years)

value: sigmoid colon

value: tissue

value: male

value: Michael Snyder, Stanford

value: 54 year

value: ENCBS345HRP at ENCODE; https://www.encodeproject.org/ENCBS345HRP/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB315SJW)

description:
https://www.encodeproject.org/experiments/ENCSR323LVJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR323LVJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB315SJW

source_name: Homo sapiens female adult (37 years) activated CD4-positive, alpha-beta T primary cell treated with Interleukin-6 for 8 hours

value: adult

value: 37 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:UniProtKB:P05231; treatment_term_name:Interleukin-6; treatment_type:protein; duration:8; duration_units:hour;

value: ENCBS937FXJ at ENCODE; https://www.encodeproject.org/ENCBS937FXJ/

value: Derived from ENCODE donor ENCDO514TDF; https://www.encodeproject.org/ENCDO514TDF/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB485NUZ)

description:
https://www.encodeproject.org/experiments/ENCSR314IOV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR314IOV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB485NUZ

source_name: Homo sapiens female adult (26 years) CD4-positive, alpha-beta T primary cell treated with Interleukin-1 beta for 1 hour

value: CD4-positive, alpha-beta T cell

value: primary cell

value: female

value: 26 year

value: treatment_term_id:UniProtKB:P01584; treatment_term_name:Interleukin-1 beta; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS777VKG at ENCODE; https://www.encodeproject.org/ENCBS777VKG/

value: Derived from ENCODE donor ENCDO134JGU; https://www.encodeproject.org/ENCDO134JGU/


title: ATAC-seq from coronary artery (ENCLB031CLU)

description:
https://www.encodeproject.org/experiments/ENCSR584AXZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human coronary artery
experiment encode accession: ENCSR584AXZ
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2017-06-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB031CLU
size range: 150-250

source_name: Homo sapiens female adult (51 years) coronary artery tissue

value: coronary artery

value: tissue

value: 51 year

value: Michael Snyder, Stanford

value: Kristin Ardlie

value: ENCBS702KSL at ENCODE; https://www.encodeproject.org/ENCBS702KSL/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB298CIV)

description:
https://www.encodeproject.org/experiments/ENCSR322BYN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR322BYN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB298CIV

source_name: Homo sapiens female adult (33 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour

value: adult

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS598DHQ at ENCODE; https://www.encodeproject.org/ENCBS598DHQ/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: DNase-seq from Right ventricle myocardium inferior (ENCLB825QIM)

description:
https://www.encodeproject.org/experiments/ENCSR085MZL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR085MZL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2021-02-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB825QIM

source_name: Homo sapiens male adult (60 years) Right ventricle myocardium inferior tissue, preserved by flash-freezing

value: Right ventricle myocardium inferior

value: Inferior wall of right ventricle.

value: male

value: 60 year

value: Yiing Lin, MD, PhD

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: ENCBS729PWD at ENCODE; https://www.encodeproject.org/ENCBS729PWD/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: ATAC-seq from RWPE2 (ENCLB293SLX)

description:
https://www.encodeproject.org/experiments/ENCSR080SNF/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human cell line RWPE-2
experiment encode accession: ENCSR080SNF
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB293SLX
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

source_name: Homo sapiens RWPE2 cell line

value: cell line

value: unknown

value: ATCC

value: ENCBS123OBK at ENCODE; https://www.encodeproject.org/ENCBS123OBK/

value: Derived from ENCODE donor ENCDO135ZNV; https://www.encodeproject.org/ENCDO135ZNV/


title: ATAC-seq from RWPE2 (ENCLB984XHJ)

description:
https://www.encodeproject.org/experiments/ENCSR080SNF/
***************
biological replicate number: 2
technical replicate number: 1
description: ATAC-seq on human cell line RWPE-2
experiment encode accession: ENCSR080SNF
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB984XHJ
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: John Stamatoyannopoulos, UW

value: ENCBS775VKW at ENCODE; https://www.encodeproject.org/ENCBS775VKW/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB682JAK)

description:
https://www.encodeproject.org/experiments/ENCSR819EPD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR819EPD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB682JAK

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour

value: primary cell

value: adult

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS034UEI at ENCODE; https://www.encodeproject.org/ENCBS034UEI/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB717IJT)

description:
https://www.encodeproject.org/experiments/ENCSR314IBN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR314IBN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB717IJT

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour

value: female

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P13232; treatment_term_name:Interleukin-7; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS856RHS at ENCODE; https://www.encodeproject.org/ENCBS856RHS/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: ATAC-seq from RWPE2 (ENCLB734LAL)

description:
https://www.encodeproject.org/experiments/ENCSR080SNF/
***************
biological replicate number: 3
technical replicate number: 1
description: ATAC-seq on human cell line RWPE-2
experiment encode accession: ENCSR080SNF
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2021-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB734LAL
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000

value: cell line

value: male

value: unknown

value: ATCC

value: ENCBS961CAJ at ENCODE; https://www.encodeproject.org/ENCBS961CAJ/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB084IJF)

description:
https://www.encodeproject.org/experiments/ENCSR314IOV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR314IOV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB084IJF

source_name: Homo sapiens female adult (39 years) CD4-positive, alpha-beta T primary cell treated with Interleukin-1 beta for 1 hour

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 39 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:UniProtKB:P01584; treatment_term_name:Interleukin-1 beta; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS812WIZ at ENCODE; https://www.encodeproject.org/ENCBS812WIZ/

value: Derived from ENCODE donor ENCDO222BBW; https://www.encodeproject.org/ENCDO222BBW/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB228HXW)

description:
https://www.encodeproject.org/experiments/ENCSR312ZTS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR312ZTS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB228HXW

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: adult

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS740FJL at ENCODE; https://www.encodeproject.org/ENCBS740FJL/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from activated T-cell (ENCLB382MVF)

description:
https://www.encodeproject.org/experiments/ENCSR810CTB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR810CTB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB382MVF

source_name: Homo sapiens male adult (38 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours

value: activated T-cell

value: male

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour;

value: ENCBS946OME at ENCODE; https://www.encodeproject.org/ENCBS946OME/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB548KBW)

description:
https://www.encodeproject.org/experiments/ENCSR579DBA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR579DBA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB548KBW

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours

value: primary cell

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS619ACH at ENCODE; https://www.encodeproject.org/ENCBS619ACH/


title: DNase-seq from activated T-cell (ENCLB768XSG)

description:
https://www.encodeproject.org/experiments/ENCSR312INU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR312INU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB768XSG

source_name: Homo sapiens female adult (33 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: female

value: 33 year

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS591UKQ at ENCODE; https://www.encodeproject.org/ENCBS591UKQ/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: ATAC-seq from spleen (ENCLB996QNU)

description:
https://www.encodeproject.org/experiments/ENCSR078EBD/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human spleen
experiment encode accession: ENCSR078EBD
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB996QNU
size range: 150-250

source_name: Homo sapiens spleen tissue female adult (51 year)

value: spleen

value: tissue

value: Michael Snyder, Stanford

value: 51 year

value: adult

value: ENCBS214FBD at ENCODE; https://www.encodeproject.org/ENCBS214FBD/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB926QVI)

description:
https://www.encodeproject.org/experiments/ENCSR799MVH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR799MVH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB926QVI

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour

value: male

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS531BXN at ENCODE; https://www.encodeproject.org/ENCBS531BXN/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB084CAY)

description:
https://www.encodeproject.org/experiments/ENCSR566HLQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR566HLQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB084CAY

source_name: Homo sapiens female adult (33 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours

value: primary cell

value: female

value: 33 year

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:Q9NPF7; treatment_term_name:Interleukin-23; treatment_type:protein; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P01584; treatment_term_name:Interleukin-1b; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS241HRO at ENCODE; https://www.encodeproject.org/ENCBS241HRO/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB836MMK)

description:
https://www.encodeproject.org/experiments/ENCSR565RQI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR565RQI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB836MMK

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS885ZRX at ENCODE; https://www.encodeproject.org/ENCBS885ZRX/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB326TEU)

description:
https://www.encodeproject.org/experiments/ENCSR075MQZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR075MQZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB326TEU

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours

value: adult

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P29460; treatment_term_name:Interleukin-12 subunit beta; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS065CKH at ENCODE; https://www.encodeproject.org/ENCBS065CKH/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB906EDK)

description:
https://www.encodeproject.org/experiments/ENCSR799MAX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR799MAX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB906EDK

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours

value: male

value: 38 year

value: ENCBS138LTN at ENCODE; https://www.encodeproject.org/ENCBS138LTN/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB032LXG)

description:
https://www.encodeproject.org/experiments/ENCSR553WJB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR553WJB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB032LXG

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS897RLI at ENCODE; https://www.encodeproject.org/ENCBS897RLI/


title: DNase-seq from suppressor macrophage (ENCLB285XKV)

description:
https://www.encodeproject.org/experiments/ENCSR069ICJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR069ICJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB285XKV
instrument models: Illumina HiSeq 4000,Illumina HiSeq 2500

source_name: Homo sapiens male adult (21 years) suppressor macrophage primary cell treated with lipopolysaccharide for 4 hours

value: suppressor macrophage

value: primary cell

value: 21 year

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS148RLZ at ENCODE; https://www.encodeproject.org/ENCBS148RLZ/

value: Derived from ENCODE donor ENCDO733YAB; https://www.encodeproject.org/ENCDO733YAB/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB872ILA)

description:
https://www.encodeproject.org/experiments/ENCSR801VSK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR801VSK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB872ILA

source_name: Homo sapiens female adult (37 years) activated CD4-positive, alpha-beta T primary cell treated with Interleukin-4 for 8 hours

value: female

value: 37 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:8; duration_units:hour;

value: ENCBS222SMU at ENCODE; https://www.encodeproject.org/ENCBS222SMU/

value: Derived from ENCODE donor ENCDO514TDF; https://www.encodeproject.org/ENCDO514TDF/


title: DNase-seq from heart left ventricle (ENCLB374TZJ)

description:
https://www.encodeproject.org/experiments/ENCSR070CMW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR070CMW
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2017-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB374TZJ

source_name: Homo sapiens female adult (53 years) heart left ventricle tissue

value: heart left ventricle

value: tissue

value: adult

value: 53 year

value: Kristin Ardlie

value: ENCBS260UTX at ENCODE; https://www.encodeproject.org/ENCBS260UTX/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB354RNS)

description:
https://www.encodeproject.org/experiments/ENCSR548KXH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR548KXH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB354RNS

value: primary cell

value: male

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:Q9NPF7; treatment_term_name:Interleukin-23; treatment_type:protein; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P01584; treatment_term_name:Interleukin-1b; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS066NJO at ENCODE; https://www.encodeproject.org/ENCBS066NJO/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from activated CD8-positive, alpha-beta T cell (ENCLB786TVY)

description:
https://www.encodeproject.org/experiments/ENCSR294YEJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR294YEJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB786TVY

source_name: Homo sapiens male adult (21 years) activated CD8-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads

value: 21 year

value: Yijun Ruan, JAX

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS566UMM at ENCODE; https://www.encodeproject.org/ENCBS566UMM/

value: Derived from ENCODE donor ENCDO781BMZ; https://www.encodeproject.org/ENCDO781BMZ/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB342PYF)

description:
https://www.encodeproject.org/experiments/ENCSR551LAH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR551LAH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB342PYF

value: adult

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS839GIN at ENCODE; https://www.encodeproject.org/ENCBS839GIN/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB745ODF)

description:
https://www.encodeproject.org/experiments/ENCSR541ZOU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR541ZOU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB745ODF

source_name: Homo sapiens male adult (42 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours

value: 42 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour;

value: ENCBS960MIG at ENCODE; https://www.encodeproject.org/ENCBS960MIG/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB242UNH)

description:
https://www.encodeproject.org/experiments/ENCSR543WNA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR543WNA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB242UNH

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours

value: primary cell

value: male

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P01375; treatment_term_name:TNF-alpha; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS237RAH at ENCODE; https://www.encodeproject.org/ENCBS237RAH/


title: DNase-seq from CD8-positive naive resting alpha-beta T cell (ENCLB916UFJ)

description:
https://www.encodeproject.org/experiments/ENCSR044JIR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR044JIR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB916UFJ

source_name: Homo sapiens male adult (42 years) CD8-positive naive resting alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:16; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS800HVV at ENCODE; https://www.encodeproject.org/ENCBS800HVV/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB898JXQ)

description:
https://www.encodeproject.org/experiments/ENCSR060TTR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR060TTR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB898JXQ

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours

value: female

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P13232; treatment_term_name:Interleukin-7; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS679AMB at ENCODE; https://www.encodeproject.org/ENCBS679AMB/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: ATAC-seq from subcutaneous adipose tissue (ENCLB503MYH)

description:
https://www.encodeproject.org/experiments/ENCSR540BML/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human adipose tissue
experiment encode accession: ENCSR540BML
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB503MYH
size range: 150-250

source_name: Homo sapiens subcutaneous adipose tissue female adult (53 years)

value: subcutaneous adipose tissue

value: tissue

value: Michael Snyder, Stanford

value: 53 year

value: adult

value: ENCBS108OCK at ENCODE; https://www.encodeproject.org/ENCBS108OCK/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: DNase-seq from activated T-cell (ENCLB425USL)

description:
https://www.encodeproject.org/experiments/ENCSR038POV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR038POV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB425USL

source_name: Homo sapiens female adult (33 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours

value: activated T-cell

value: primary cell

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS066XJR at ENCODE; https://www.encodeproject.org/ENCBS066XJR/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB295GPV)

description:
https://www.encodeproject.org/experiments/ENCSR534OJE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR534OJE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB295GPV

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: male

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS055BEU at ENCODE; https://www.encodeproject.org/ENCBS055BEU/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB695FFW)

description:
https://www.encodeproject.org/experiments/ENCSR050VTC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR050VTC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB695FFW

source_name: Homo sapiens male adult (42 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours

value: 42 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:Q9NPF7; treatment_term_name:Interleukin-23; treatment_type:protein; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P01584; treatment_term_name:Interleukin-1b; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS155ORK at ENCODE; https://www.encodeproject.org/ENCBS155ORK/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB503GGZ)

description:
https://www.encodeproject.org/experiments/ENCSR531UVE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR531UVE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB503GGZ

source_name: Homo sapiens male adult (42 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour

value: adult

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS736RZQ at ENCODE; https://www.encodeproject.org/ENCBS736RZQ/


title: ATAC-seq from omental fat pad (ENCLB041VOC)

description:
https://www.encodeproject.org/experiments/ENCSR788TRR/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human adipose tissue of omentum
experiment encode accession: ENCSR788TRR
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB041VOC
size range: 150-250

source_name: Homo sapiens omental fat pad tissue female adult (51 year)

value: omental fat pad

value: tissue

value: female

value: Michael Snyder, Stanford

value: 51 year

value: ENCBS971HUW at ENCODE; https://www.encodeproject.org/ENCBS971HUW/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB943LYQ)

description:
https://www.encodeproject.org/experiments/ENCSR284GAG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR284GAG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB943LYQ

source_name: Homo sapiens male adult (42 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours

value: primary cell

value: male

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS583HXB at ENCODE; https://www.encodeproject.org/ENCBS583HXB/


title: DNase-seq from activated CD8-positive, alpha-beta T cell (ENCLB993MYL)

description:
https://www.encodeproject.org/experiments/ENCSR776BTO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR776BTO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB993MYL

source_name: Homo sapiens male adult (21 years) activated CD8-positive, alpha-beta T primary cell treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads

value: 21 year

value: Yijun Ruan, JAX

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS909ZBB at ENCODE; https://www.encodeproject.org/ENCBS909ZBB/

value: Derived from ENCODE donor ENCDO781BMZ; https://www.encodeproject.org/ENCDO781BMZ/


title: DNase-seq from activated CD4-positive, alpha-beta memory T cell (ENCLB081KWE)

description:
https://www.encodeproject.org/experiments/ENCSR021YFW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR021YFW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB081KWE

source_name: Homo sapiens male adult (43 years) activated CD4-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads

value: adult

value: 43 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS007TSX at ENCODE; https://www.encodeproject.org/ENCBS007TSX/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB024YQL)

description:
https://www.encodeproject.org/experiments/ENCSR284VNJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR284VNJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB024YQL

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS622VRD at ENCODE; https://www.encodeproject.org/ENCBS622VRD/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: ATAC-seq from body of pancreas (ENCLB581LYM)

description:
https://www.encodeproject.org/experiments/ENCSR773USD/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human body of pancreas
experiment encode accession: ENCSR773USD
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2017-06-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB581LYM
size range: 150-250

source_name: Homo sapiens body of pancreas tissue female adult (51 year)

value: body of pancreas

value: tissue

value: female

value: Michael Snyder, Stanford

value: 51 year

value: ENCBS425WFZ at ENCODE; https://www.encodeproject.org/ENCBS425WFZ/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB295IDI)

description:
https://www.encodeproject.org/experiments/ENCSR019MZH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR019MZH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB295IDI

source_name: Homo sapiens female adult (33 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS884LAH at ENCODE; https://www.encodeproject.org/ENCBS884LAH/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: ATAC-seq from Peyer's patch (ENCLB908YZQ)

description:
https://www.encodeproject.org/experiments/ENCSR017RQC/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human Peyer's patch
experiment encode accession: ENCSR017RQC
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2017-06-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB908YZQ
size range: 150-250

source_name: Homo sapiens female adult (53 years) Peyer's patch tissue

value: Peyer's patch

value: adult

value: 53 year

value: Kristin Ardlie

value: ENCBS877BPO at ENCODE; https://www.encodeproject.org/ENCBS877BPO/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB203VLZ)

description:
https://www.encodeproject.org/experiments/ENCSR274XTS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR274XTS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB203VLZ

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: male

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS156CWZ at ENCODE; https://www.encodeproject.org/ENCBS156CWZ/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from activated T-cell (ENCLB227OVA)

description:
https://www.encodeproject.org/experiments/ENCSR771JQH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR771JQH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB227OVA

source_name: Homo sapiens female adult (33 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: activated T-cell

value: primary cell

value: female

value: 33 year

value: ENCBS796BFF at ENCODE; https://www.encodeproject.org/ENCBS796BFF/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB195LGX)

description:
https://www.encodeproject.org/experiments/ENCSR273USD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR273USD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB195LGX

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour;

value: ENCBS957FMP at ENCODE; https://www.encodeproject.org/ENCBS957FMP/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB156REF)

description:
https://www.encodeproject.org/experiments/ENCSR765ZML/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR765ZML
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB156REF

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours

value: adult

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS866MFX at ENCODE; https://www.encodeproject.org/ENCBS866MFX/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB391NSC)

description:
https://www.encodeproject.org/experiments/ENCSR294DND/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR294DND
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB391NSC

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours

value: male

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS828JSD at ENCODE; https://www.encodeproject.org/ENCBS828JSD/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB527UGN)

description:
https://www.encodeproject.org/experiments/ENCSR768AWY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR768AWY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB527UGN

source_name: Homo sapiens male adult (42 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours

value: 42 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS532CGG at ENCODE; https://www.encodeproject.org/ENCBS532CGG/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: DNase-seq from CD4-positive naive resting alpha-beta T cell (ENCLB274NPV)

description:
https://www.encodeproject.org/experiments/ENCSR778DWG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR778DWG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB274NPV

source_name: Homo sapiens male adult (38 years) CD4-positive naive resting alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours

value: primary cell

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:16; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS795LPE at ENCODE; https://www.encodeproject.org/ENCBS795LPE/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB329REH)

description:
https://www.encodeproject.org/experiments/ENCSR015FZF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR015FZF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB329REH

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS407FDC at ENCODE; https://www.encodeproject.org/ENCBS407FDC/


title: ATAC-seq from transverse colon (ENCLB746WRB)

description:
https://www.encodeproject.org/experiments/ENCSR761TKU/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human transverse colon
experiment encode accession: ENCSR761TKU
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB746WRB
size range: 150-250

source_name: Homo sapiens transverse colon tissue male adult (54 years)

value: transverse colon

value: tissue

value: Michael Snyder, Stanford

value: 54 year

value: adult

value: ENCBS866IBT at ENCODE; https://www.encodeproject.org/ENCBS866IBT/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB027MXP)

description:
https://www.encodeproject.org/experiments/ENCSR287GYT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR287GYT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB027MXP

source_name: Homo sapiens male adult (42 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours

value: male

value: 42 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P01375; treatment_term_name:TNF-alpha; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS500KAX at ENCODE; https://www.encodeproject.org/ENCBS500KAX/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB228JTF)

description:
https://www.encodeproject.org/experiments/ENCSR494IWJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR494IWJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB228JTF

source_name: Homo sapiens male adult (42 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours

value: primary cell

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P01375; treatment_term_name:TNF-alpha; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS464YUP at ENCODE; https://www.encodeproject.org/ENCBS464YUP/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB073NYA)

description:
https://www.encodeproject.org/experiments/ENCSR502GWQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR502GWQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB073NYA

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS362GMK at ENCODE; https://www.encodeproject.org/ENCBS362GMK/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from activated T-cell (ENCLB363IJP)

description:
https://www.encodeproject.org/experiments/ENCSR273GCF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR273GCF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB363IJP

source_name: Homo sapiens male adult (38 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: activated T-cell

value: adult

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS903BZS at ENCODE; https://www.encodeproject.org/ENCBS903BZS/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB169EOJ)

description:
https://www.encodeproject.org/experiments/ENCSR266NDC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR266NDC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB169EOJ

source_name: Homo sapiens female adult (33 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour

value: female

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P01375; treatment_term_name:TNF-alpha; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS609WYV at ENCODE; https://www.encodeproject.org/ENCBS609WYV/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB453DZV)

description:
https://www.encodeproject.org/experiments/ENCSR493IQY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR493IQY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB453DZV

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: primary cell

value: male

value: ENCBS955CTE at ENCODE; https://www.encodeproject.org/ENCBS955CTE/


title: ATAC-seq from ovary (ENCLB771HZA)

description:
https://www.encodeproject.org/experiments/ENCSR490MSG/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human ovary
experiment encode accession: ENCSR490MSG
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB771HZA
size range: 150-250

source_name: Homo sapiens ovary tissue female adult (53 years)

value: ovary

value: tissue

value: Michael Snyder, Stanford

value: 53 year

value: ENCBS165BJP at ENCODE; https://www.encodeproject.org/ENCBS165BJP/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: DNase-seq from transverse colon (ENCLB173IHV)

description:
https://www.encodeproject.org/experiments/ENCSR760QZM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR760QZM
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2017-10-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB173IHV

source_name: Homo sapiens female adult (51 years) transverse colon tissue

value: transverse colon

value: adult

value: 51 year

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS232VCE at ENCODE; https://www.encodeproject.org/ENCBS232VCE/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ATAC-seq from gastroesophageal sphincter (ENCLB374PIF)

description:
https://www.encodeproject.org/experiments/ENCSR260ZIV/
***************
biological replicate number: 1
technical replicate number: 1
description: ATAC-seq on human esophagogastric junction
experiment encode accession: ENCSR260ZIV
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2016-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB374PIF
size range: 150-250

source_name: Homo sapiens gastroesophageal sphincter tissue female adult (51 year)

value: gastroesophageal sphincter

value: female

value: ENCBS728DKU at ENCODE; https://www.encodeproject.org/ENCBS728DKU/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB345CSU)

description:
https://www.encodeproject.org/experiments/ENCSR474HQW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR474HQW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB345CSU

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours

value: primary cell

value: male

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS582IZP at ENCODE; https://www.encodeproject.org/ENCBS582IZP/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB152SPU)

description:
https://www.encodeproject.org/experiments/ENCSR749YCR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR749YCR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB152SPU

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour

value: adult

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P13232; treatment_term_name:Interleukin-7; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS412WIG at ENCODE; https://www.encodeproject.org/ENCBS412WIG/


title: DNase-seq from activated CD4 positive, naive alpha-beta T cell (ENCLB867NKX)

description:
https://www.encodeproject.org/experiments/ENCSR478SWA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR478SWA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB867NKX

source_name: Homo sapiens male adult (43 years) activated CD4 positive, naive alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads

value: 43 year

value: Yijun Ruan, JAX

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS313FAQ at ENCODE; https://www.encodeproject.org/ENCBS313FAQ/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB151MYL)

description:
https://www.encodeproject.org/experiments/ENCSR471RHG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR471RHG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB151MYL

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS437ZGY at ENCODE; https://www.encodeproject.org/ENCBS437ZGY/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB459EFT)

description:
https://www.encodeproject.org/experiments/ENCSR486FMF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR486FMF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB459EFT

source_name: Homo sapiens female adult (33 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours

value: primary cell

value: female

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS636SMB at ENCODE; https://www.encodeproject.org/ENCBS636SMB/

value: Derived from ENCODE donor ENCDO299FMV; https://www.encodeproject.org/ENCDO299FMV/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB766KGF)

description:
https://www.encodeproject.org/experiments/ENCSR735MJZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR735MJZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-28
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB766KGF

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours

value: adult

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS821WVV at ENCODE; https://www.encodeproject.org/ENCBS821WVV/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB320IUV)

description:
https://www.encodeproject.org/experiments/ENCSR255OGF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR255OGF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2020-09-23
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB320IUV

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour

value: male

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS321JKO at ENCODE; https://www.encodeproject.org/ENCBS321JKO/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/