title: Histone ChIP-seq from left lung (ENCLB594CTM)

description:
https://www.encodeproject.org/experiments/ENCSR352BOS/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on left lung tissue female child (16 years)
experiment encode accession: ENCSR352BOS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR650AIN
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB594CTM
size range: 200-600

source_name: Homo sapiens female child (16 years) left lung tissue

value: left lung

value: female

value: child

value: 16 year

value: Shin Lin

value: DM:no; HTN:no; CAD:no

value: ENCBS892NYC at ENCODE; https://www.encodeproject.org/ENCBS892NYC/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: TF ChIP-seq from endodermal cell (ENCLB874JQN)

status: Public on May 23 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR398RET/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on endodermal cell originated from endodermal cell
experiment encode accession: ENCSR398RET
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR273FER
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB874JQN
fragmentation methods: sonication (generic)
size range: 200-600

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens female embryo (5 days) endodermal in vitro differentiated cells originated from endodermal cell

tag: antibody

value: CTCF

value: endodermal cell

value: in vitro differentiated cells

tag: description

value: WA09 derived endoderm cells

tag: biosample encode accession

tag: Sex

tag: health state

value: healthy

tag: dev stage

value: embryonic

tag: age

value: 5 day

tag: lab

value: Bradley Bernstein, Broad

tag: source

value: SESCC

tag: link

value: ENCBS958FWY at ENCODE; https://www.encodeproject.org/ENCBS958FWY/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB967UNN)

description:
https://www.encodeproject.org/experiments/ENCSR372YQR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue male adult (86 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR372YQR
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR347KLR
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB967UNN
size range: 200-600

source_name: Homo sapiens male adult (86 years) middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: male

value: adult

value: 86 year

value: Rush University

value: ENCBS940YCN at ENCODE; https://www.encodeproject.org/ENCBS940YCN/

value: Derived from ENCODE donor ENCDO666UNK; https://www.encodeproject.org/ENCDO666UNK/


title: Histone ChIP-seq from left lung (ENCLB221EAK)

description:
https://www.encodeproject.org/experiments/ENCSR352BOS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on left lung tissue female child (16 years)
experiment encode accession: ENCSR352BOS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR650AIN
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB221EAK
size range: 200-600

value: left lung

value: female

value: child

value: 16 year

value: Shin Lin

value: DM:no; HTN:no; CAD:no

value: ENCBS892NYC at ENCODE; https://www.encodeproject.org/ENCBS892NYC/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB246CLL)

description:
https://www.encodeproject.org/experiments/ENCSR351RPE/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR351RPE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB246CLL
size range: 200-600

source_name: Homo sapiens male adult (60 years) left ventricle myocardium inferior tissue

value: left ventricle myocardium inferior

value: 60 year

value: Bradley Bernstein, Broad

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: ENCBS672IKS at ENCODE; https://www.encodeproject.org/ENCBS672IKS/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB844ZIS)

description:
https://www.encodeproject.org/experiments/ENCSR351RPE/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K9me3 ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR351RPE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB844ZIS
size range: 200-600

value: tissue

value: male

value: adult


title: Control ChIP-seq from foreskin keratinocyte (ENCLB478ILY)

description:
https://www.encodeproject.org/experiments/ENCSR488AHQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq control (input DNA) on primary keratinocytes in day 3 of differentiation
experiment encode accession: ENCSR488AHQ
assay title: Control ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB478ILY

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 days

value: foreskin keratinocyte

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 3.0

value: newborn

value: 2-4 day

value: Paul Khavari, Stanford

value: Paul Khavari

tag: treatments

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:2.5; duration_units:day;

value: Healthy

tag: passage number

value: ENCBS299ONK at ENCODE; https://www.encodeproject.org/ENCBS299ONK/

value: Derived from ENCODE donor ENCDO005EGE; https://www.encodeproject.org/ENCDO005EGE/


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB805BLZ)

description:
https://www.encodeproject.org/experiments/ENCSR351RPE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR351RPE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB805BLZ
size range: 200-600

value: left ventricle myocardium inferior

value: 60 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: ENCBS267RXN at ENCODE; https://www.encodeproject.org/ENCBS267RXN/


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB106CJZ)

description:
https://www.encodeproject.org/experiments/ENCSR351RPE/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR351RPE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB106CJZ
size range: 200-600

value: tissue

value: male

value: adult

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: Control ChIP-seq from foreskin keratinocyte (ENCLB711KJU)

description:
https://www.encodeproject.org/experiments/ENCSR488AHQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq control (input DNA) on primary keratinocytes in day 3 of differentiation
experiment encode accession: ENCSR488AHQ
assay title: Control ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB711KJU

value: foreskin keratinocyte

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 3.0

value: newborn

value: 2-4 day

value: ENCBS079LRU at ENCODE; https://www.encodeproject.org/ENCBS079LRU/

value: Derived from ENCODE donor ENCDO615NVN; https://www.encodeproject.org/ENCDO615NVN/


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB292GKN)

description:
https://www.encodeproject.org/experiments/ENCSR350KJU/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR350KJU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB292GKN
size range: 200-600

value: left ventricle myocardium inferior


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB637FYP)

description:
https://www.encodeproject.org/experiments/ENCSR350KJU/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K4me1 ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR350KJU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB637FYP
size range: 200-600

value: 60 year

value: ENCBS672IKS at ENCODE; https://www.encodeproject.org/ENCBS672IKS/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB725ZXJ)

description:
https://www.encodeproject.org/experiments/ENCSR807TBS/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (87 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR807TBS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR394ZWY
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB725ZXJ
size range: 200-600

source_name: Homo sapiens female adult (87 years) middle frontal area 46 tissue with mild cognitive impairment

value: middle frontal area 46

value: female

value: 87 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS401VAK at ENCODE; https://www.encodeproject.org/ENCBS401VAK/

value: Derived from ENCODE donor ENCDO354SJE; https://www.encodeproject.org/ENCDO354SJE/


title: Control ChIP-seq from middle frontal area 46 (ENCLB452MVQ)

description:
https://www.encodeproject.org/experiments/ENCSR376YUP/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (87 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR376YUP
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB452MVQ
size range: 200-600

source_name: Homo sapiens female adult (87 years) middle frontal area 46 tissue with Alzheimer's disease, Cognitive impairment

value: tissue

value: adult

value: ENCBS592YXK at ENCODE; https://www.encodeproject.org/ENCBS592YXK/

value: Derived from ENCODE donor ENCDO940VNT; https://www.encodeproject.org/ENCDO940VNT/


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB646UMB)

description:
https://www.encodeproject.org/experiments/ENCSR350KJU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR350KJU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB646UMB
size range: 200-600

value: male

value: Shin Lin

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: ENCBS267RXN at ENCODE; https://www.encodeproject.org/ENCBS267RXN/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: Control ChIP-seq from middle frontal area 46 (ENCLB248OMA)

description:
https://www.encodeproject.org/experiments/ENCSR347KLR/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue male adult (86 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR347KLR
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB248OMA
size range: 200-600

value: 86 year

value: ENCBS940YCN at ENCODE; https://www.encodeproject.org/ENCBS940YCN/

value: Derived from ENCODE donor ENCDO666UNK; https://www.encodeproject.org/ENCDO666UNK/


title: Control ChIP-seq from SK-N-SH (ENCLB383MVD)

description:
https://www.encodeproject.org/experiments/ENCSR481DSF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR481DSF
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB383MVD
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting PATZ1 treated with 6uM all-trans-retinoic acid for 48 hours

tag: line

value: SK-N-SH

value: cell line

value: female

value: child

value: 4 year

value: Michael Snyder, Stanford

value: ATCC

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS273WSA at ENCODE; https://www.encodeproject.org/ENCBS273WSA/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: Control ChIP-seq from middle frontal area 46 (ENCLB737GMX)

description:
https://www.encodeproject.org/experiments/ENCSR376YUP/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (87 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR376YUP
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB737GMX
size range: 200-600

value: middle frontal area 46

value: tissue

value: adult

value: 87 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS592YXK at ENCODE; https://www.encodeproject.org/ENCBS592YXK/

value: Derived from ENCODE donor ENCDO940VNT; https://www.encodeproject.org/ENCDO940VNT/


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB042VEO)

description:
https://www.encodeproject.org/experiments/ENCSR350KJU/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR350KJU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB042VEO
size range: 200-600

value: left ventricle myocardium inferior

value: male

value: 60 year

value: Shin Lin

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: ENCBS672IKS at ENCODE; https://www.encodeproject.org/ENCBS672IKS/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: Control ChIP-seq from middle frontal area 46 (ENCLB060AJD)

description:
https://www.encodeproject.org/experiments/ENCSR347KLR/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue male adult (86 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR347KLR
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB060AJD
size range: 200-600

value: 86 year

value: ENCBS940YCN at ENCODE; https://www.encodeproject.org/ENCBS940YCN/

value: Derived from ENCODE donor ENCDO666UNK; https://www.encodeproject.org/ENCDO666UNK/


title: Control ChIP-seq from middle frontal area 46 (ENCLB324SIP)

description:
https://www.encodeproject.org/experiments/ENCSR799VTP/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (83 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR799VTP
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB324SIP
size range: 200-600

source_name: Homo sapiens female adult (83 years) middle frontal area 46 tissue with mild cognitive impairment

value: middle frontal area 46

value: tissue

value: female

value: 83 year

value: ENCBS104CPK at ENCODE; https://www.encodeproject.org/ENCBS104CPK/

value: Derived from ENCODE donor ENCDO832DBZ; https://www.encodeproject.org/ENCDO832DBZ/


title: Control ChIP-seq from middle frontal area 46 (ENCLB464YQN)

description:
https://www.encodeproject.org/experiments/ENCSR799VTP/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (83 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR799VTP
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB464YQN
size range: 200-600

value: adult

value: Bradley Bernstein, Broad

value: Rush University


title: Histone ChIP-seq from left lung (ENCLB075GUK)

description:
https://www.encodeproject.org/experiments/ENCSR800MYV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on left lung tissue female child (16 years)
experiment encode accession: ENCSR800MYV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR650AIN
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB075GUK
size range: 200-600

value: left lung

value: child

value: 16 year

value: DM:no; HTN:no; CAD:no

value: ENCBS892NYC at ENCODE; https://www.encodeproject.org/ENCBS892NYC/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB543IZZ)

description:
https://www.encodeproject.org/experiments/ENCSR807TBS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (87 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR807TBS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR394ZWY
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB543IZZ
size range: 200-600

value: 87 year

value: ENCBS401VAK at ENCODE; https://www.encodeproject.org/ENCBS401VAK/

value: Derived from ENCODE donor ENCDO354SJE; https://www.encodeproject.org/ENCDO354SJE/


title: TF ChIP-seq from nephron progenitor cell (ENCLB838QVH)

description:
https://www.encodeproject.org/experiments/ENCSR799GJD/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on nephron progenitor cell
experiment encode accession: ENCSR799GJD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR795YGE
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB838QVH
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female embryo (5 days) nephron progenitor in vitro differentiated cells

value: CTCF

value: nephron progenitor cell

value: in vitro differentiated cells

value: H9 NPC (Day 8):Nephron progenitor cells derived from H9 ES cells

value: healthy

value: embryonic

value: 5 day

value: Joseph Bonventre

value: ENCBS491YOI at ENCODE; https://www.encodeproject.org/ENCBS491YOI/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: TF ChIP-seq from nephron progenitor cell (ENCLB578WJW)

description:
https://www.encodeproject.org/experiments/ENCSR799GJD/
***************
biological replicate number: 2
technical replicate number: 2
description: CTCF ChIP-seq on nephron progenitor cell
experiment encode accession: ENCSR799GJD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR795YGE
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB578WJW
fragmentation methods: sonication (generic)
size range: 200-600

value: female

value: Bradley Bernstein, Broad


title: Histone ChIP-seq from left lung (ENCLB614WMS)

description:
https://www.encodeproject.org/experiments/ENCSR800MYV/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on left lung tissue female child (16 years)
experiment encode accession: ENCSR800MYV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR650AIN
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB614WMS
size range: 200-600

value: left lung

value: tissue

value: child

value: 16 year

value: Shin Lin

value: DM:no; HTN:no; CAD:no

value: ENCBS892NYC at ENCODE; https://www.encodeproject.org/ENCBS892NYC/


title: TF ChIP-seq from nephron progenitor cell (ENCLB961SVS)

description:
https://www.encodeproject.org/experiments/ENCSR799GJD/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on nephron progenitor cell
experiment encode accession: ENCSR799GJD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR795YGE
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB961SVS
fragmentation methods: sonication (generic)
size range: 200-600

value: CTCF

value: nephron progenitor cell

value: in vitro differentiated cells

value: ENCBS835ZTQ at ENCODE; https://www.encodeproject.org/ENCBS835ZTQ/


title: TF ChIP-seq from nephron progenitor cell (ENCLB464ISA)

description:
https://www.encodeproject.org/experiments/ENCSR799GJD/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on nephron progenitor cell
experiment encode accession: ENCSR799GJD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR795YGE
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB464ISA
fragmentation methods: sonication (generic)
size range: 200-600

value: H9 NPC (Day 8):Nephron progenitor cells derived from H9 ES cells

value: healthy

value: embryonic

value: 5 day


title: Histone ChIP-seq from middle frontal area 46 (ENCLB854PBS)

description:
https://www.encodeproject.org/experiments/ENCSR344PHP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (88 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR344PHP
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR291VCJ
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB854PBS
size range: 200-600

source_name: Homo sapiens female adult (88 years) middle frontal area 46 tissue

value: middle frontal area 46

value: female

value: adult

value: 88 year

value: Rush University

value: ENCBS844HXF at ENCODE; https://www.encodeproject.org/ENCBS844HXF/

value: Derived from ENCODE donor ENCDO669IVL; https://www.encodeproject.org/ENCDO669IVL/


title: Control ChIP-seq from SK-N-SH (ENCLB768DJG)

description:
https://www.encodeproject.org/experiments/ENCSR451BHD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR451BHD
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB768DJG
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting PPARA treated with 6uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: cell line

value: child

value: 4 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS073IGD at ENCODE; https://www.encodeproject.org/ENCBS073IGD/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: TF ChIP-seq from H9 (ENCLB887ADQ)

description:
https://www.encodeproject.org/experiments/ENCSR871MKQ/
***************
biological replicate number: 2
technical replicate number: 2
description: CTCF ChIP-seq on H9 originated from H9
experiment encode accession: ENCSR871MKQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR686HII
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB887ADQ
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens H9 cell line originated from H9

value: CTCF

value: WA09 ES cells

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein, Broad

value: SESCC

value: ENCBS713BMM at ENCODE; https://www.encodeproject.org/ENCBS713BMM/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB518YKW)

description:
https://www.encodeproject.org/experiments/ENCSR309EQQ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR309EQQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB518YKW
size range: 200-600

value: left ventricle myocardium inferior

value: tissue

value: male

value: adult

value: 60 year

value: Shin Lin

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: ENCBS672IKS at ENCODE; https://www.encodeproject.org/ENCBS672IKS/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: Histone ChIP-seq from left lung (ENCLB802ZAF)

description:
https://www.encodeproject.org/experiments/ENCSR796SRF/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 ChIP-seq on left lung tissue female child (16 years)
experiment encode accession: ENCSR796SRF
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR650AIN
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB802ZAF
size range: 200-600

value: left lung

value: female

value: child

value: 16 year

value: DM:no; HTN:no; CAD:no

value: ENCBS892NYC at ENCODE; https://www.encodeproject.org/ENCBS892NYC/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB705MIZ)

description:
https://www.encodeproject.org/experiments/ENCSR798YAU/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (84 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR798YAU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR258GSA
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB705MIZ
size range: 200-600

source_name: Homo sapiens female adult (84 years) middle frontal area 46 tissue

value: middle frontal area 46

value: 84 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS224FBK at ENCODE; https://www.encodeproject.org/ENCBS224FBK/

value: Derived from ENCODE donor ENCDO461DJY; https://www.encodeproject.org/ENCDO461DJY/


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB509OVB)

description:
https://www.encodeproject.org/experiments/ENCSR384AGH/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR384AGH
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB509OVB
size range: 200-600

value: left ventricle myocardium inferior

value: tissue

value: male

value: adult

value: 60 year

value: Shin Lin


title: Histone ChIP-seq from left lung (ENCLB341GMD)

description:
https://www.encodeproject.org/experiments/ENCSR793LDG/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on left lung tissue female child (16 years)
experiment encode accession: ENCSR793LDG
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR650AIN
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB341GMD
size range: 200-600

value: left lung

value: female

value: child


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB786VIA)

description:
https://www.encodeproject.org/experiments/ENCSR309EQQ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR309EQQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB786VIA
size range: 200-600

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: ENCBS267RXN at ENCODE; https://www.encodeproject.org/ENCBS267RXN/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB055MAY)

description:
https://www.encodeproject.org/experiments/ENCSR309EQQ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR309EQQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB055MAY
size range: 200-600


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB832LKF)

description:
https://www.encodeproject.org/experiments/ENCSR309EQQ/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K36me3 ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR309EQQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB832LKF
size range: 200-600

value: ENCBS672IKS at ENCODE; https://www.encodeproject.org/ENCBS672IKS/


title: Control ChIP-seq from K562 (ENCLB035JPQ)

description:
https://www.encodeproject.org/experiments/ENCSR409VQS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR409VQS
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB035JPQ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting SHOX2

value: cell line

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: chronic myelogenous leukemia (CML)

value: ENCBS908XEC at ENCODE; https://www.encodeproject.org/ENCBS908XEC/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: Histone ChIP-seq from left lung (ENCLB122NPL)

description:
https://www.encodeproject.org/experiments/ENCSR793LDG/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 ChIP-seq on left lung tissue female child (16 years)
experiment encode accession: ENCSR793LDG
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR650AIN
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB122NPL
size range: 200-600

value: tissue

value: 16 year

value: Bradley Bernstein, Broad

value: DM:no; HTN:no; CAD:no

value: ENCBS892NYC at ENCODE; https://www.encodeproject.org/ENCBS892NYC/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: Control ChIP-seq from SK-N-SH (ENCLB894FQU)

description:
https://www.encodeproject.org/experiments/ENCSR411AFQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR411AFQ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB894FQU
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting CREB5 treated with 6uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: female

value: child

value: 4 year

value: Michael Snyder

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS621EAE at ENCODE; https://www.encodeproject.org/ENCBS621EAE/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: TF ChIP-seq from osteocyte (ENCLB869ZSI)

description:
https://www.encodeproject.org/experiments/ENCSR300DWM/
***************
biological replicate number: 2
technical replicate number: 2
description: CTCF ChIP-seq on osteocyte originated from osteocyte
experiment encode accession: ENCSR300DWM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR702WFF
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB869ZSI
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female embryo (5 days) osteocyte in vitro differentiated cells originated from osteocyte

value: CTCF

value: osteocyte

value: in vitro differentiated cells

value: WA09 derived osteocytes

value: healthy

value: embryonic

value: 5 day

value: SESCC

value: ENCBS572IFJ at ENCODE; https://www.encodeproject.org/ENCBS572IFJ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: TF ChIP-seq from osteocyte (ENCLB428ZGS)

description:
https://www.encodeproject.org/experiments/ENCSR300DWM/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on osteocyte originated from osteocyte
experiment encode accession: ENCSR300DWM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR702WFF
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB428ZGS
fragmentation methods: sonication (generic)
size range: 200-600

value: female

value: Bradley Bernstein, Broad

value: ENCBS034WOR at ENCODE; https://www.encodeproject.org/ENCBS034WOR/


title: Control ChIP-seq from SK-N-SH (ENCLB378LXV)

description:
https://www.encodeproject.org/experiments/ENCSR823HRT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR823HRT
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB378LXV
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line treated with 6uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: cell line

value: child

value: 4 year

value: Michael Snyder, Stanford

value: ATCC

value: Metastatic neuroblastoma from bone marrow

value: ENCBS493GYR at ENCODE; https://www.encodeproject.org/ENCBS493GYR/


title: TF ChIP-seq from osteocyte (ENCLB460BLL)

description:
https://www.encodeproject.org/experiments/ENCSR300DWM/
***************
biological replicate number: 1
technical replicate number: 3
description: CTCF ChIP-seq on osteocyte originated from osteocyte
experiment encode accession: ENCSR300DWM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR702WFF
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB460BLL
fragmentation methods: sonication (generic)
size range: 200-600

value: CTCF

value: osteocyte

value: in vitro differentiated cells

value: WA09 derived osteocytes

value: healthy


title: TF ChIP-seq from osteocyte (ENCLB378OHH)

description:
https://www.encodeproject.org/experiments/ENCSR300DWM/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on osteocyte originated from osteocyte
experiment encode accession: ENCSR300DWM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR702WFF
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB378OHH
fragmentation methods: sonication (generic)
size range: 200-600

value: embryonic

value: 5 day

value: SESCC

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: TF ChIP-seq from osteocyte (ENCLB295CIW)

description:
https://www.encodeproject.org/experiments/ENCSR300DWM/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on osteocyte originated from osteocyte
experiment encode accession: ENCSR300DWM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR702WFF
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB295CIW
fragmentation methods: sonication (generic)
size range: 200-600

value: female

value: Bradley Bernstein, Broad

value: ENCBS572IFJ at ENCODE; https://www.encodeproject.org/ENCBS572IFJ/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB853ABB)

description:
https://www.encodeproject.org/experiments/ENCSR344PHP/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (88 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR344PHP
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR291VCJ
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB853ABB
size range: 200-600

value: middle frontal area 46

value: tissue

value: adult

value: 88 year

value: Rush University

value: ENCBS844HXF at ENCODE; https://www.encodeproject.org/ENCBS844HXF/

value: Derived from ENCODE donor ENCDO669IVL; https://www.encodeproject.org/ENCDO669IVL/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB693RNQ)

description:
https://www.encodeproject.org/experiments/ENCSR299EQJ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (81 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR299EQJ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR617ONQ
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB693RNQ
size range: 200-600

source_name: Homo sapiens female adult (81 years) middle frontal area 46 tissue with Alzheimer's disease

value: 81 year

value: ENCBS554ZGD at ENCODE; https://www.encodeproject.org/ENCBS554ZGD/

value: Derived from ENCODE donor ENCDO097MEH; https://www.encodeproject.org/ENCDO097MEH/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB997LHI)

description:
https://www.encodeproject.org/experiments/ENCSR299EQJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (81 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR299EQJ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR617ONQ
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB997LHI
size range: 200-600


title: Histone ChIP-seq from middle frontal area 46 (ENCLB220LBV)

description:
https://www.encodeproject.org/experiments/ENCSR798YAU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (84 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR798YAU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR258GSA
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB220LBV
size range: 200-600

value: 84 year

value: ENCBS224FBK at ENCODE; https://www.encodeproject.org/ENCBS224FBK/

value: Derived from ENCODE donor ENCDO461DJY; https://www.encodeproject.org/ENCDO461DJY/


title: Control ChIP-seq from A549 (ENCLB462KXU)

description:
https://www.encodeproject.org/experiments/ENCSR814XCZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 mins.
experiment encode accession: ENCSR814XCZ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB462KXU
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 cell line

value: cell line

value: male

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: ENCBS861MJO at ENCODE; https://www.encodeproject.org/ENCBS861MJO/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Control ChIP-seq from A549 (ENCLB083KUD)

description:
https://www.encodeproject.org/experiments/ENCSR814XCZ/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 mins.
experiment encode accession: ENCSR814XCZ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB083KUD
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ENCBS521RDU at ENCODE; https://www.encodeproject.org/ENCBS521RDU/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB681LKC)

description:
https://www.encodeproject.org/experiments/ENCSR335YEH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on dorsolateral prefrontal cortex tissue male adult (71 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR335YEH
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR714GKF
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB681LKC
size range: 200-600

source_name: Homo sapiens male adult (71 years) middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: 71 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS552CLR at ENCODE; https://www.encodeproject.org/ENCBS552CLR/

value: Derived from ENCODE donor ENCDO570AKP; https://www.encodeproject.org/ENCDO570AKP/


title: Histone ChIP-seq from left lung (ENCLB971UUW)

description:
https://www.encodeproject.org/experiments/ENCSR796SRF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on left lung tissue female child (16 years)
experiment encode accession: ENCSR796SRF
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR650AIN
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB971UUW
size range: 200-600

source_name: Homo sapiens female child (16 years) left lung tissue

value: left lung

value: female

value: child

value: 16 year

value: Shin Lin

value: DM:no; HTN:no; CAD:no

value: ENCBS892NYC at ENCODE; https://www.encodeproject.org/ENCBS892NYC/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: Control ChIP-seq from A549 (ENCLB123PZB)

description:
https://www.encodeproject.org/experiments/ENCSR814XCZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 mins.
experiment encode accession: ENCSR814XCZ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB123PZB
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: cell line

value: male

value: adult

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: ENCBS132RXT at ENCODE; https://www.encodeproject.org/ENCBS132RXT/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB393JPG)

description:
https://www.encodeproject.org/experiments/ENCSR335YEH/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on dorsolateral prefrontal cortex tissue male adult (71 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR335YEH
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR714GKF
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB393JPG
size range: 200-600

value: middle frontal area 46

value: tissue

value: 71 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS552CLR at ENCODE; https://www.encodeproject.org/ENCBS552CLR/

value: Derived from ENCODE donor ENCDO570AKP; https://www.encodeproject.org/ENCDO570AKP/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB160ZXD)

description:
https://www.encodeproject.org/experiments/ENCSR787QZE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR787QZE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR096QCF
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB160ZXD
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue with Cognitive impairment

value: female

value: 90 or above year

value: ENCBS736CMF at ENCODE; https://www.encodeproject.org/ENCBS736CMF/

value: Derived from ENCODE donor ENCDO359XWR; https://www.encodeproject.org/ENCDO359XWR/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB192MOZ)

description:
https://www.encodeproject.org/experiments/ENCSR786VUJ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (86 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR786VUJ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR822YWX
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB192MOZ
size range: 200-600

source_name: Homo sapiens female adult (86 years) middle frontal area 46 tissue with Cognitive impairment

value: adult

value: 86 year

value: ENCBS821RYQ at ENCODE; https://www.encodeproject.org/ENCBS821RYQ/

value: Derived from ENCODE donor ENCDO845GYA; https://www.encodeproject.org/ENCDO845GYA/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB880ONV)

description:
https://www.encodeproject.org/experiments/ENCSR786VUJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (86 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR786VUJ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR822YWX
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB880ONV
size range: 200-600


title: Control ChIP-seq from middle frontal area 46 (ENCLB729OSD)

description:
https://www.encodeproject.org/experiments/ENCSR291VCJ/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (88 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR291VCJ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB729OSD
size range: 200-600

value: 88 year

value: ENCBS844HXF at ENCODE; https://www.encodeproject.org/ENCBS844HXF/

value: Derived from ENCODE donor ENCDO669IVL; https://www.encodeproject.org/ENCDO669IVL/


title: Control ChIP-seq from middle frontal area 46 (ENCLB029YOP)

description:
https://www.encodeproject.org/experiments/ENCSR291VCJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (88 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR291VCJ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB029YOP
size range: 200-600

value: middle frontal area 46

value: tissue


title: TF ChIP-seq from nephron (ENCLB793BGL)

description:
https://www.encodeproject.org/experiments/ENCSR266ZUX/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on nephron female embryo (5 days)
experiment encode accession: ENCSR266ZUX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR846POB
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB793BGL
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female embryo (5 days) nephron organoid

value: CTCF

value: nephron

value: organoid

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein, Broad

value: Joseph Bonventre

value: ENCBS165DBC at ENCODE; https://www.encodeproject.org/ENCBS165DBC/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: TF ChIP-seq from nephron (ENCLB012YRT)

description:
https://www.encodeproject.org/experiments/ENCSR266ZUX/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on nephron female embryo (5 days)
experiment encode accession: ENCSR266ZUX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR846POB
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB012YRT
fragmentation methods: sonication (generic)
size range: 200-600

value: female


title: Control ChIP-seq from SK-N-SH (ENCLB462AKC)

description:
https://www.encodeproject.org/experiments/ENCSR358RZO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR358RZO
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB462AKC
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting TSHZ2 treated with 6uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: cell line

value: child

value: 4 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS065XPO at ENCODE; https://www.encodeproject.org/ENCBS065XPO/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB464WRH)

description:
https://www.encodeproject.org/experiments/ENCSR256OOR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (87 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR256OOR
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR394ZWY
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB464WRH
size range: 200-600

source_name: Homo sapiens female adult (87 years) middle frontal area 46 tissue with mild cognitive impairment

value: middle frontal area 46

value: tissue

value: adult

value: 87 year

value: Rush University

value: ENCBS401VAK at ENCODE; https://www.encodeproject.org/ENCBS401VAK/

value: Derived from ENCODE donor ENCDO354SJE; https://www.encodeproject.org/ENCDO354SJE/


title: Control ChIP-seq from middle frontal area 46 (ENCLB233CWX)

description:
https://www.encodeproject.org/experiments/ENCSR258GSA/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (84 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR258GSA
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB233CWX
size range: 200-600

value: female

value: 84 year

value: Bradley Bernstein, Broad

value: ENCBS224FBK at ENCODE; https://www.encodeproject.org/ENCBS224FBK/

value: Derived from ENCODE donor ENCDO461DJY; https://www.encodeproject.org/ENCDO461DJY/


title: Control ChIP-seq from middle frontal area 46 (ENCLB194JNH)

description:
https://www.encodeproject.org/experiments/ENCSR258GSA/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue female adult (84 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR258GSA
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB194JNH
size range: 200-600


title: Control ChIP-seq from A549 (ENCLB141NEJ)

description:
https://www.encodeproject.org/experiments/ENCSR344CSQ/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 25 mins.
experiment encode accession: ENCSR344CSQ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB141NEJ
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: cell line

value: male

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: ENCBS379YBF at ENCODE; https://www.encodeproject.org/ENCBS379YBF/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from left lung (ENCLB477QKW)

description:
https://www.encodeproject.org/experiments/ENCSR255SQR/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on left lung male adult (40 years)
experiment encode accession: ENCSR255SQR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR936CZX
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB477QKW
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens male adult (40 years) left lung tissue, preserved by flash-freezing

value: CTCF

value: left lung

value: tissue

value: DM:no; HTN:yes; CAD:no

value: adult

value: 40 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS628ZUJ at ENCODE; https://www.encodeproject.org/ENCBS628ZUJ/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB017GET)

description:
https://www.encodeproject.org/experiments/ENCSR256OOR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (87 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR256OOR
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR394ZWY
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB017GET
size range: 200-600

value: middle frontal area 46

value: female

value: 87 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS401VAK at ENCODE; https://www.encodeproject.org/ENCBS401VAK/

value: Derived from ENCODE donor ENCDO354SJE; https://www.encodeproject.org/ENCDO354SJE/


title: TF ChIP-seq from left lung (ENCLB918FKM)

description:
https://www.encodeproject.org/experiments/ENCSR255SQR/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on left lung male adult (40 years)
experiment encode accession: ENCSR255SQR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR936CZX
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB918FKM
fragmentation methods: sonication (generic)
size range: 200-600

value: CTCF

value: male


title: TF ChIP-seq from pancreas (ENCLB127UCS)

description:
https://www.encodeproject.org/experiments/ENCSR253ALG/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on pancreas female adult (61 years)
experiment encode accession: ENCSR253ALG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR130HAG
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB127UCS
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (61 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: tissue

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: 61 year

value: ENCBS297KRV at ENCODE; https://www.encodeproject.org/ENCBS297KRV/

value: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/


title: Control ChIP-seq from A549 (ENCLB589NDF)

description:
https://www.encodeproject.org/experiments/ENCSR344CSQ/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 25 mins.
experiment encode accession: ENCSR344CSQ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB589NDF
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: cell line

value: adult

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: ENCBS090AZM at ENCODE; https://www.encodeproject.org/ENCBS090AZM/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from pancreas (ENCLB199ZZA)

description:
https://www.encodeproject.org/experiments/ENCSR253ALG/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on pancreas female adult (61 years)
experiment encode accession: ENCSR253ALG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR130HAG
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB199ZZA
fragmentation methods: sonication (generic)
size range: 200-600

value: female

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD


title: Control ChIP-seq from A549 (ENCLB742CNU)

description:
https://www.encodeproject.org/experiments/ENCSR344CSQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 25 mins.
experiment encode accession: ENCSR344CSQ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB742CNU
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: ENCBS260OBW at ENCODE; https://www.encodeproject.org/ENCBS260OBW/


title: Control ChIP-seq from foreskin keratinocyte (ENCLB528JKD)

description:
https://www.encodeproject.org/experiments/ENCSR335GGM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq control (input DNA) on primary keratinocytes in day 6 of differentiation
experiment encode accession: ENCSR335GGM
assay title: Control ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB528JKD

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days

value: foreskin keratinocyte

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 6.0

value: newborn

value: 2-4 day

value: Paul Khavari, Stanford

value: Paul Khavari

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:5.5; duration_units:day;

value: Healthy

value: ENCBS389AUD at ENCODE; https://www.encodeproject.org/ENCBS389AUD/

value: Derived from ENCODE donor ENCDO615NVN; https://www.encodeproject.org/ENCDO615NVN/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB774ZYS)

description:
https://www.encodeproject.org/experiments/ENCSR787QZE/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR787QZE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR096QCF
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB774ZYS
size range: 200-600

value: middle frontal area 46

value: tissue

value: adult

value: 90 or above year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS736CMF at ENCODE; https://www.encodeproject.org/ENCBS736CMF/

value: Derived from ENCODE donor ENCDO359XWR; https://www.encodeproject.org/ENCDO359XWR/


title: Control ChIP-seq from foreskin keratinocyte (ENCLB931LXF)

description:
https://www.encodeproject.org/experiments/ENCSR335GGM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq control (input DNA) on primary keratinocytes in day 6 of differentiation
experiment encode accession: ENCSR335GGM
assay title: Control ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB931LXF

value: foreskin keratinocyte

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 6.0

value: male

value: ENCBS135YLX at ENCODE; https://www.encodeproject.org/ENCBS135YLX/

value: Derived from ENCODE donor ENCDO005EGE; https://www.encodeproject.org/ENCDO005EGE/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB922QAB)

description:
https://www.encodeproject.org/experiments/ENCSR776TJT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR776TJT
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR437DCH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB922QAB
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue with mild cognitive impairment

value: female

value: ENCBS152TRC at ENCODE; https://www.encodeproject.org/ENCBS152TRC/

value: Derived from ENCODE donor ENCDO634UMA; https://www.encodeproject.org/ENCDO634UMA/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB320APH)

description:
https://www.encodeproject.org/experiments/ENCSR776TJT/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR776TJT
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR437DCH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB320APH
size range: 200-600

value: middle frontal area 46


title: Histone ChIP-seq from middle frontal area 46 (ENCLB868VGX)

description:
https://www.encodeproject.org/experiments/ENCSR251PPB/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR251PPB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR153LYY
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB868VGX
size range: 200-600

value: tissue

value: ENCBS835TES at ENCODE; https://www.encodeproject.org/ENCBS835TES/

value: Derived from ENCODE donor ENCDO672KST; https://www.encodeproject.org/ENCDO672KST/


title: Histone ChIP-seq from adrenal gland (ENCLB831JEG)

description:
https://www.encodeproject.org/experiments/ENCSR775NSL/
***************
biological replicate number: 1
technical replicate number: 3
description: H3K4me3 ChIP-seq on adrenal gland female adult (41 years)
experiment encode accession: ENCSR775NSL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR071ILJ
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB831JEG
size range: 200-600

source_name: Homo sapiens female adult (41 years) adrenal gland tissue, preserved by flash-freezing

extract_protocol: not provided

value: adrenal gland

value: adult

value: 41 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: DM:no; HTN:no; CAD:no

value: ENCBS491ORA at ENCODE; https://www.encodeproject.org/ENCBS491ORA/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB398NDM)

description:
https://www.encodeproject.org/experiments/ENCSR251PPB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR251PPB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR153LYY
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB398NDM
size range: 200-600

value: 90 or above year

value: Bradley Bernstein, Broad

value: Rush University


title: Histone ChIP-seq from adrenal gland (ENCLB714IHG)

description:
https://www.encodeproject.org/experiments/ENCSR775NSL/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K4me3 ChIP-seq on adrenal gland female adult (41 years)
experiment encode accession: ENCSR775NSL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR071ILJ
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB714IHG
size range: 200-600

source_name: Homo sapiens female adult (41 years) adrenal gland tissue

value: female

value: Shin Lin

value: ENCBS648AMG at ENCODE; https://www.encodeproject.org/ENCBS648AMG/


title: Histone ChIP-seq from adrenal gland (ENCLB028CMW)

description:
https://www.encodeproject.org/experiments/ENCSR775NSL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on adrenal gland female adult (41 years)
experiment encode accession: ENCSR775NSL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR071ILJ
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB028CMW
fragmentation methods: sonication (generic)
size range: 200-600

value: tissue


title: Histone ChIP-seq from adrenal gland (ENCLB768RLA)

description:
https://www.encodeproject.org/experiments/ENCSR775NSL/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on adrenal gland female adult (41 years)
experiment encode accession: ENCSR775NSL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR071ILJ
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB768RLA
fragmentation methods: sonication (generic)
size range: 200-600


title: Control ChIP-seq from A549 (ENCLB413QWE)

description:
https://www.encodeproject.org/experiments/ENCSR324VMZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 20 mins.
experiment encode accession: ENCSR324VMZ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB413QWE
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: cell line

value: male

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: ENCBS412ZNQ at ENCODE; https://www.encodeproject.org/ENCBS412ZNQ/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Histone ChIP-seq from adrenal gland (ENCLB159UPD)

description:
https://www.encodeproject.org/experiments/ENCSR775NSL/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on adrenal gland female adult (41 years)
experiment encode accession: ENCSR775NSL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR071ILJ
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB159UPD
size range: 200-600

value: adrenal gland

value: adult

value: 41 year

value: DM:no; HTN:no; CAD:no


title: Histone ChIP-seq from adrenal gland (ENCLB990GIU)

description:
https://www.encodeproject.org/experiments/ENCSR775NSL/
***************
biological replicate number: 1
technical replicate number: 4
description: H3K4me3 ChIP-seq on adrenal gland female adult (41 years)
experiment encode accession: ENCSR775NSL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR071ILJ
encode release date: 2020-09-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB990GIU
size range: 200-600

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS491ORA at ENCODE; https://www.encodeproject.org/ENCBS491ORA/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Control ChIP-seq from A549 (ENCLB763RMQ)

description:
https://www.encodeproject.org/experiments/ENCSR324VMZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 20 mins.
experiment encode accession: ENCSR324VMZ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB763RMQ
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS916GRQ at ENCODE; https://www.encodeproject.org/ENCBS916GRQ/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB258WOZ)

description:
https://www.encodeproject.org/experiments/ENCSR774IHJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on dorsolateral prefrontal cortex tissue male adult (78 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR774IHJ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR086BNR
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB258WOZ
size range: 200-600

source_name: Homo sapiens male adult (78 years) middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: 78 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS375CUK at ENCODE; https://www.encodeproject.org/ENCBS375CUK/

value: Derived from ENCODE donor ENCDO623FPG; https://www.encodeproject.org/ENCDO623FPG/


title: TF ChIP-seq from pancreas (ENCLB243BBE)

description:
https://www.encodeproject.org/experiments/ENCSR774PGN/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on pancreas female adult (41 years)
experiment encode accession: ENCSR774PGN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR462ZQL
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB243BBE
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female adult (41 years) pancreas tissue, preserved by flash-freezing

value: CTCF

value: pancreas

value: female

value: ENCBS212NYF at ENCODE; https://www.encodeproject.org/ENCBS212NYF/


title: Control ChIP-seq from A549 (ENCLB837IMO)

description:
https://www.encodeproject.org/experiments/ENCSR324VMZ/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 20 mins.
experiment encode accession: ENCSR324VMZ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB837IMO
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: cell line

value: male

value: adult

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: ENCBS513CFP at ENCODE; https://www.encodeproject.org/ENCBS513CFP/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from pancreas (ENCLB735QGO)

description:
https://www.encodeproject.org/experiments/ENCSR774PGN/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on pancreas female adult (41 years)
experiment encode accession: ENCSR774PGN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR462ZQL
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB735QGO
fragmentation methods: sonication (generic)
size range: 200-600

value: tissue

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB265BPV)

description:
https://www.encodeproject.org/experiments/ENCSR774IHJ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on dorsolateral prefrontal cortex tissue male adult (78 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR774IHJ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR086BNR
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB265BPV
size range: 200-600

value: middle frontal area 46

value: 78 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS375CUK at ENCODE; https://www.encodeproject.org/ENCBS375CUK/

value: Derived from ENCODE donor ENCDO623FPG; https://www.encodeproject.org/ENCDO623FPG/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB191TEF)

description:
https://www.encodeproject.org/experiments/ENCSR768YDB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (88 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR768YDB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR291VCJ
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB191TEF
size range: 200-600

source_name: Homo sapiens female adult (88 years) middle frontal area 46 tissue

value: female

value: adult

value: 88 year

value: ENCBS844HXF at ENCODE; https://www.encodeproject.org/ENCBS844HXF/

value: Derived from ENCODE donor ENCDO669IVL; https://www.encodeproject.org/ENCDO669IVL/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB277QTA)

description:
https://www.encodeproject.org/experiments/ENCSR237QNB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR237QNB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR096QCF
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB277QTA
size range: 200-600

value: tissue

value: 90 or above year

value: ENCBS736CMF at ENCODE; https://www.encodeproject.org/ENCBS736CMF/

value: Derived from ENCODE donor ENCDO359XWR; https://www.encodeproject.org/ENCDO359XWR/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB674JCN)

description:
https://www.encodeproject.org/experiments/ENCSR768YDB/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (88 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR768YDB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR291VCJ
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB674JCN
size range: 200-600


title: Histone ChIP-seq from middle frontal area 46 (ENCLB424ZZT)

description:
https://www.encodeproject.org/experiments/ENCSR233RWF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR233RWF
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR096QCF
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB424ZZT
size range: 200-600


title: Histone ChIP-seq from pancreas (ENCLB511HDV)

description:
https://www.encodeproject.org/experiments/ENCSR751GUM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on pancreas tissue female child (16 years)
experiment encode accession: ENCSR751GUM
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR067CHO
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB511HDV
size range: 200-600

source_name: Homo sapiens female child (16 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: DM:no; HTN:no; CAD:no

value: child

value: 16 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS375CIT at ENCODE; https://www.encodeproject.org/ENCBS375CIT/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: Histone ChIP-seq from pancreas (ENCLB771MIT)

description:
https://www.encodeproject.org/experiments/ENCSR751GUM/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on pancreas tissue female child (16 years)
experiment encode accession: ENCSR751GUM
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR067CHO
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB771MIT
size range: 200-600

value: female


title: Histone ChIP-seq from middle frontal area 46 (ENCLB643FZI)

description:
https://www.encodeproject.org/experiments/ENCSR237QNB/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR237QNB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR096QCF
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB643FZI
size range: 200-600

value: middle frontal area 46

value: adult

value: Bradley Bernstein, Broad

value: Rush University


title: Control ChIP-seq from middle frontal area 46 (ENCLB633ZCW)

description:
https://www.encodeproject.org/experiments/ENCSR739QEI/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on dorsolateral prefrontal cortex tissue male adult (87 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR739QEI
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB633ZCW
size range: 200-600

source_name: Homo sapiens male adult (87 years) middle frontal area 46 tissue

value: tissue

value: male

value: 87 year

value: ENCBS552HSQ at ENCODE; https://www.encodeproject.org/ENCBS552HSQ/

value: Derived from ENCODE donor ENCDO203ASI; https://www.encodeproject.org/ENCDO203ASI/


title: Histone ChIP-seq from pancreas (ENCLB242EIS)

description:
https://www.encodeproject.org/experiments/ENCSR233EDV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on pancreas tissue female adult (59 years)
experiment encode accession: ENCSR233EDV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR490NCK
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB242EIS
size range: 200-600

source_name: Homo sapiens female adult (59 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: ENCBS483KZB at ENCODE; https://www.encodeproject.org/ENCBS483KZB/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB389ERM)

description:
https://www.encodeproject.org/experiments/ENCSR233RWF/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR233RWF
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR096QCF
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB389ERM
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue with Cognitive impairment

value: 90 or above year

value: ENCBS736CMF at ENCODE; https://www.encodeproject.org/ENCBS736CMF/

value: Derived from ENCODE donor ENCDO359XWR; https://www.encodeproject.org/ENCDO359XWR/


title: Histone ChIP-seq from pancreas (ENCLB570JXQ)

description:
https://www.encodeproject.org/experiments/ENCSR233EDV/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on pancreas tissue female adult (59 years)
experiment encode accession: ENCSR233EDV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR490NCK
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB570JXQ
size range: 200-600

value: female

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD


title: Control ChIP-seq from SK-N-SH (ENCLB239EBD)

description:
https://www.encodeproject.org/experiments/ENCSR245JGC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR245JGC
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB239EBD
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line treated with 6uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: cell line

value: child

value: 4 year

value: ATCC

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS705FZB at ENCODE; https://www.encodeproject.org/ENCBS705FZB/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB017YLO)

description:
https://www.encodeproject.org/experiments/ENCSR737WCC/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR737WCC
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB017YLO
size range: 200-600

source_name: Homo sapiens male adult (60 years) left ventricle myocardium inferior tissue

value: left ventricle myocardium inferior

value: tissue

value: male

value: adult

value: 60 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: ENCBS672IKS at ENCODE; https://www.encodeproject.org/ENCBS672IKS/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB605KSW)

description:
https://www.encodeproject.org/experiments/ENCSR737WCC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR737WCC
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB605KSW
size range: 200-600

value: ENCBS267RXN at ENCODE; https://www.encodeproject.org/ENCBS267RXN/


title: Histone ChIP-seq from pancreas (ENCLB440KDW)

description:
https://www.encodeproject.org/experiments/ENCSR233EDV/
***************
biological replicate number: 1
technical replicate number: 3
description: H3K4me1 ChIP-seq on pancreas tissue female adult (59 years)
experiment encode accession: ENCSR233EDV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR490NCK
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB440KDW
size range: 200-600

value: pancreas

value: female

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS483KZB at ENCODE; https://www.encodeproject.org/ENCBS483KZB/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Control ChIP-seq from K562 (ENCLB040PAT)

description:
https://www.encodeproject.org/experiments/ENCSR766WPH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR766WPH
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-03-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB040PAT
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line

value: cell line

value: 53 year

value: ATCC

value: chronic myelogenous leukemia (CML)

value: ENCBS607POK at ENCODE; https://www.encodeproject.org/ENCBS607POK/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB349KBZ)

description:
https://www.encodeproject.org/experiments/ENCSR737WCC/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K4me3 ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR737WCC
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB349KBZ
size range: 200-600

value: left ventricle myocardium inferior

value: tissue

value: male

value: adult

value: 60 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: ENCBS672IKS at ENCODE; https://www.encodeproject.org/ENCBS672IKS/


title: Histone ChIP-seq from left ventricle myocardium inferior (ENCLB795TSN)

description:
https://www.encodeproject.org/experiments/ENCSR737WCC/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on left ventricle myocardium inferior tissue male adult (60 years)
experiment encode accession: ENCSR737WCC
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR608IVH
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB795TSN
size range: 200-600

value: ENCBS267RXN at ENCODE; https://www.encodeproject.org/ENCBS267RXN/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: TF ChIP-seq from brain (ENCLB144RMB)

description:
https://www.encodeproject.org/experiments/ENCSR225KOS/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on brain female embryo (5 days)
experiment encode accession: ENCSR225KOS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR292BUB
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB144RMB
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female embryo (5 days) brain organoid

value: CTCF

value: brain

value: organoid

value: female

value: healthy

value: embryonic

value: 5 day

value: Paola Arlotta

value: ENCBS327MWD at ENCODE; https://www.encodeproject.org/ENCBS327MWD/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB668CPZ)

description:
https://www.encodeproject.org/experiments/ENCSR220TRW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (89 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR220TRW
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR151NEZ
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB668CPZ
size range: 200-600

source_name: Homo sapiens female adult (89 years) middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: adult

value: 89 year

value: Rush University

value: ENCBS738TIQ at ENCODE; https://www.encodeproject.org/ENCBS738TIQ/

value: Derived from ENCODE donor ENCDO707TUE; https://www.encodeproject.org/ENCDO707TUE/


title: TF ChIP-seq from brain (ENCLB486XZU)

description:
https://www.encodeproject.org/experiments/ENCSR225KOS/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on brain female embryo (5 days)
experiment encode accession: ENCSR225KOS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR292BUB
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB486XZU
fragmentation methods: sonication (generic)
size range: 200-600

value: CTCF

value: Bradley Bernstein, Broad


title: TF ChIP-seq from neural crest cell (ENCLB249DUN)

description:
https://www.encodeproject.org/experiments/ENCSR218MVT/
***************
biological replicate number: 2
technical replicate number: 2
description: CTCF ChIP-seq on neural crest cell originated from neural crest cell
experiment encode accession: ENCSR218MVT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR318RRK
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB249DUN
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female embryo (5 days) neural crest in vitro differentiated cells originated from neural crest cell

value: neural crest cell

value: in vitro differentiated cells

value: WA09 derived neural crest cells

value: SESCC

value: ENCBS417JEU at ENCODE; https://www.encodeproject.org/ENCBS417JEU/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB373RUH)

description:
https://www.encodeproject.org/experiments/ENCSR220TRW/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on dorsolateral prefrontal cortex tissue female adult (89 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR220TRW
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR151NEZ
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB373RUH
size range: 200-600

value: female


title: TF ChIP-seq from neural crest cell (ENCLB981IZJ)

description:
https://www.encodeproject.org/experiments/ENCSR218MVT/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on neural crest cell originated from neural crest cell
experiment encode accession: ENCSR218MVT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR318RRK
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB981IZJ
fragmentation methods: sonication (generic)
size range: 200-600

value: healthy

value: embryonic

value: 5 day


title: TF ChIP-seq from neural crest cell (ENCLB024GDW)

description:
https://www.encodeproject.org/experiments/ENCSR218MVT/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on neural crest cell originated from neural crest cell
experiment encode accession: ENCSR218MVT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR318RRK
encode release date: 2021-04-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB024GDW
fragmentation methods: sonication (generic)
size range: 200-600

value: ENCBS200JOD at ENCODE; https://www.encodeproject.org/ENCBS200JOD/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB744GRO)

description:
https://www.encodeproject.org/experiments/ENCSR206CIN/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on dorsolateral prefrontal cortex tissue female adult (74 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR206CIN
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR698YQL
encode release date: 2021-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB744GRO
size range: 200-600

source_name: Homo sapiens female adult (74 years) middle frontal area 46 tissue with Alzheimer's disease

value: middle frontal area 46

value: tissue

value: adult

value: 74 year

value: ENCBS242LMI at ENCODE; https://www.encodeproject.org/ENCBS242LMI/

value: Derived from ENCODE donor ENCDO907CMO; https://www.encodeproject.org/ENCDO907CMO/