title: control K562 RNA-seq rep2

description:
TZlane1-R06_TKR181201339-6
processed data file: K562.RNA-seq.fragment_count.txt


title: Well D04 Sample

status: Public on Jun 17 2021

type: RNA

city: San Antonio

first: Georgios

last: Kotsakis

state: TX

address: 7703 Floyd Curl Dr.

department: Periodontics

country: USA

institute: UT Health San Antonio

description: SST-RMA expression value derived from Transcriptome Analysis Console; exon analysis

hyb_protocol: Sample reads were loaded in the Transcriptome Analysis Console (TAC, Affymetrix) using the Summarization Signal Space Transformation - Robust Multichip Analysis (SST-RMA) algorithm.

scan_protocol: Array scanning was performed according to the manufacturer's instruction (Affymetrix)

data_processing: Annotated reads of microarray data were loaded in the Transcriptome Analysis Console (TAC, Affymetrix) using the Summarization Signal Space Transformation - Robust Multichip Analysis (SST-RMA) algorithm. Samples were examined for quality control using Target Prep Controls. Hybridization Controls were used to ensure proper hybridization of tested samples. Processed microarray data was then further analyzed in TAC to determine any condition-specific changes in expression of select genes. The samples were analyzed by expression levels (determined by probe intensity) of all genes present in the samples.

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: Peri-implantitis patient

label_protocol: Used probes tiled through the most constitutively share exons across all known transcripts for a given gene.

growth_protocol: Healthy samples were obtained from procedures such as tissue excision for contour site development around healed implant provisional restorations as long as they included all components of the peri-implant soft tissue barrier. Diseased samples were obtained during peri-implantitis surgical therapy with care to also obtain the entire peri-implant soft tissue barrier. Immediately after harvesting the samples were trimmed to 2 x 3 mm dimensions and stored in RNAlater solution (Invitrogen, USA) and stored in -20°C in the Biospecimen repository of the Translational Periodontal Research Lab, UT Health San Antonio.

extract_protocol: gDNA was eliminated and RNA was extracted from samples using a RNeasy Plus mini kit (Qiagen, Hilden, Germany) according to manufacturer’s instruction, treated using Proteinase K digestion and purified via a spin column using silica gel particles.

tag: tissue

value: Peri-implant soft tissue barrier


title: Well E04 Sample


title: GBM22 AR 2

city: Boston

first: Boston University

last: Microarray and Sequencing Resource

state: MA

address: 72 East Concord Street, E631

department: Microarray and Sequencing Resource

institute: Boston University

hyb_protocol: The labeled, fragmented DNA was hybridized to the Affymetrix Human Gene 2.0 ST for 18 hours in a GeneChip Hybridization oven 640 at 45oC with rotation (60 rpm). The hybridized samples were washed and stained using an Affymetrix fluidics station 450.

scan_protocol: After staining, microarrays were immediately scanned using an Affymetrix GeneArray Scanner 3000 7G Plus.

data_processing: Raw Affymetrix CEL files were normalized to produce Entrez-Gene-identifier-specific expression values using the implementation of the Robust Multiarray Average (RMA) in the affy Bioconductor package (version 1.36.1), using R version 2.15.1 and the Brainarray hugene20sthsentrezgcdf R package (version 17.0.0).

source_name: Alisertib-resistant GBM22

label_protocol: Biotin labeling was performed using the WT Plus reagent kit (Affymetrix, Santa Clara, CA) according to the manufacturer's protocol.

growth_protocol: Cells were maintained in DMEM+10%FBS.

extract_protocol: Total RNA was isolated using miRNAeasy Mini Kit (QIAGEN 217004) according to the manufacturer's protocol.

treatment_protocol: Alisertib-resistant cells were obtained by maintaining cells in DMEM+10%FBS+1uM Alisertib for 10 days.

tag: cell type

value: GBM22 patient-derived xenograft cells

tag: group

value: Alisertib-resistant


title: DOT1L KO K562 RNA-seq rep2

type: SRA

city: Shanghai

first: Aiwei

last: Wu

state: Shanghai

address: 800 Dongchuan Road

department: School of Life Sciences and Biotechnology

country: China

institute: Shanghai Jiao Tong University

description:
TZlane1-R10_TKR181201339-10
processed data file: K562.RNA-seq.fragment_count.txt

library_source: transcriptomic

data_processing:
Raw reads were trimmed for adaptor sequence and low-complexity or low-quality sequence were filtered using fastp v0.13.1 with default parameters. ChIP-seq, ATAC-seq, PRO-seq, CUT&Tag and 4sUDRB-seq reads were aligned using bowtie2 v2.3.4.1. RNA-seq read were aligned using hisat2 v2.1.0 with parameter --rna-strandness RF.
For ChIP-seq, ATAC-seq, PRO-seq, CUT&Tag and 4sUDRB-seq, normalized aboundency in each 50-bp genomic bin were generated into bigWig file using deepTools bamCoverage command with parameter --normalizeUsing CPM. For RNA-seq, read/fragment count were obtained using featureCounts v1.6.1.
Genome_build: Hg38 for RNA-seq, ChIP-seq, ATAC-seq, PRO-seq and CUT&Tag read mapping, hg19 for 4sUDRB-seq.
Supplementary_files_format_and_content: Tab-delimited text files include read/fragment count values of genes for each sample.
Supplementary_files_format_and_content: BigWig files contains normalized read count (CPM, in 50-bp bins) for ChIP-seq, PRO-seq, CUT&Tag and 4sUDRB-seq or normalized insertion count (CPM, in 50-bp bins) for ATAC-seq.

source_name: DOT1L KO K562 RNA-seq

growth_protocol: Human cells HEL cells were cultured in RPMI-1640 + 10% FBS + 2% Penicillin/Streptomycin + 2 mM L-Glutamine + 55 μM β-mercaptoethanol. Human cells K562 were cultured in 90% DMEM + 10% FBS+ 2% Penicillin/Streptomycin + 2 mM L-Glutamine.

extract_protocol:
RNA was extracted from cells using RNeasy Plus Mini Kit (Qiagen, cat. no. 74134) and Quick-RNA MiniPrep Kit (Zymo Research, cat. no. R1054)
the Illumina TruSeq RNA Library preparation protocol: PolyA RNA is captured by oligodT beads and fragmented when eluted from the beads. The first-strand cDNA was synthesized by reverse transcriptase using dNTP, whereas the second-strand cDNA was generated using a dUTP mix . After end-repair, dA-tailing and adapter ligation, the dUTP-containing second strand is digested by uracil DNA glycosylase, rendering it unamplifiable in the subsequent PCR step. Hence the resulting library contains only PCR product of the first-strand cDNA. And then, the barcoded DNA was amplified by 15-cycle PCR.  Libraries were sequenced on Illumina Genome Analyzer II, HiSeq 2000, or HiSeq 2500.

tag: cell line

tag: genotype/variation


title: polii_0h_no_A.rep1

city: Philadelphia

first: Yemin

last: Lan

state: PA

address: 3400 Civic Center Blvd

institute: University of Pennsylvania

library_source: genomic

data_processing:
Sequencing reads were mapped to mm9 using Bowtie2 (v2.2.9) with default parameters. Aligments with MAPQ score smaller than 10 were discarded. Duplicates were removed using Samtools (v0.1.19), and in addition, reads on mitochondria, contigs and blacklist regions were removed. BAM files were converted to BED files using Bedtools (v2.27.1). Peaks were called using MACS2 (v2.1.0) over corresponding input controls, with default parameters and 0.01 q-value cutoff.
Genome_build: mm9
Supplementary_files_format_and_content: bigwig files and peak files for each biologica replicate is provided

molecule: genomic DNA

organism: Mus musculus

source_name: G1E-ER4 cells

growth_protocol: G1E-ER4 is a subline of the GATA1-null proerythroblast cell line G1E (Weiss et al, Mol. Cell. Biol. 17, 1642–51 (1997).). Cells were cultered in IMDM medium, supplemented with 15% FBS, penicillin/streptomycin, kit ligand, monothioglycerol and Epoetin alpha at 37 degrees with 5% CO2 (as described in Weiss et al., 1997).

extract_protocol:
Chromatin immunoprecipitation (ChIP) was performed using anti-RNA Polymerase II antibody (Cell Signaling, 14958) as described previously 1. Briefly, following sorting, cells were re-suspended in 1ml pre-cooled Cell Lysis Buffer supplemented with protease inhibitors (PI) and PMSF for 20min on ice. Nuclei were pelleted and re-suspended in 1ml Nuclear Lysis Buffer (50mM Tris pH 8, 10mM EDTA, 1% SDS, fresh supplemented with PI and PMSF) for 10min on ice. 0.6ml IP dilution buffer (20mM Tris pH 8, 2mM EDTA, 150mM NaCl, 1% Triton X-100, 0.01% SDS, fresh supplemented with PI and PMSF) was added followed by sonication (Epishear, Active Motif, 100% amplitude, 30s ON and 30s OFF) for 45min. Samples were pelleted at 15000rpm for 10min at 4℃ to remove cell debris. Supernatant was supplemented with 3.4ml IP dilution buffer fresh supplemented with PI and PMSF, 50g isotope-matched IgG and 50l protein A/G agarose beads (A:G = 1:1, ThermoFisher 15918014 and ThermoFisher 15920010) and rotated at 4℃ for 8h to preclear the chromatin. 200μl, chromatin was set aside as input chromatin. Precleared chromatin was then incubated with 35μl A/G agarose beads (A:G = 1:1) pre-bound with anti-RNA PolII antibody (5μg/IP) at 4℃ for overnight. Beads were washed once with IP wash buffer I (20mM Tris pH 8, 2mM EDTA, 50mMNaCl, 1% Triton X-100, 0.1% SDS), twice with high salt buffer (20mMTris pH 8, 2mM EDTA, 500mMNaCl, 1% Triton X-100, 0.01% SDS), once with IP wash buffer II (10mMTris pH 8, 1mM EDTA, 0.25 M LiCl, 1% NP-40/Igepal, 1% sodium deoxycholate) and twice with TE buffer (10mM Tris pH 8, 1mM EDTA pH 8). All washing steps were performed on ice. Beads were moved to RT and eluted in 200μl fresh made Elution Buffer (100mM NaHCO3, 1%SDS). 12μl of 5M NaCl, 2μl RNaseA (10mg/ml) was added to IP and input samples and incubated at 65℃ for 2h, followed by addition of 3μl protease K (20mg/ml) and incubated at 65℃ overnight to reverse crosslinking. Finally, IP and input samples were supplemented with 10ul of 3M sodium acetate (pH 5.2), and DNA was purified with QIAquick PCR purification kit (QIAGEN 28106).
ChIP-seq libraries were constructed using the Illumina’s TruSeq ChIP sample preparation kit (Illumina, catalog no. IP-202-1012). Libraries were size selected using the SPRIselect beads (Beckman Coulter, catalog no. B23318) before PCR amplification. Libraries were then quantified through real-time PCR with the KAPA Library Quant Kit for Illumina (KAPA Biosystems catalog no. KK4835). Finally, libraries were pooled and sequenced on a Illumina NextSeq 500 platform using Illumina sequencing reagents.

treatment_protocol: Cells were synchronized to pro-metaphase with 200ng/ml nocodazole for 7-8.5h. For post-mitotic enrichment, cells were released from nocodazole for 0,  60min, 120min and 240min for pro-meta, early-G1, mid-G1 and late-G1 respectively.

value: erythroid

tag: time point

tag: antibody


title: Well C04 Sample

source_name: Healthy patient


title: GBM22 AR 1


title: Innercork July replicate 2 [jl2_11170_TAGCTT]

status: Public on Jun 16 2021

city: Girona

first: Olga

last: Serra

state: Girona

address: C/ Maria Aurèlia Capmany, 40

department: Biologia

country: Spain

institute: Universitat de Girona

data_processing:
RNA-seq data were first analysed for quality control with FastQC v0.11.5
Adapters were eliminated using the Skewer software version 0.2.2
Sequences of polluting ribosomal were eliminated with the riboPicker version 0.4.3
Transcriptome alignment and mapping was made using the STAR_2.5.3a program against the reference genome GCF_002906115.1 (CorkOak1.0).
The alignment quality was evaluated using QualiMap v2.2.1 program
Raw counts were pre-filtered for low count genes (read count >1 in every sample) before running the DESeq2 functions for obtaining the differentially expressed genes (DEG) between June/April, July/April and June/July comparisons
For Arabidopsis thaliana annotation we used the Blastp and the TAIR10 library from Ensembl, with the options num_alignments 1 and evalue 1E-5.
Genome_build: GCF_002906115.1 (CorkOak1.0)
Supplementary_files_format_and_content: One unique file with a matrix table with regularized and log transformed read counts for each cork oak gene (locus identifier) and sample. The corresponding Arabidopsis thaliana annotation is also provided.

molecule: polyA RNA

organism: Quercus suber

source_name: innercork (phellem+phellogenic tissue) from virgin cork_July

growth_protocol: naturally growing in a forest in Romanyà de la Selva (Girona, Spain)

extract_protocol:
Total RNA was extracted from cork tissue by a modification of the method described by Chang et al. (1993). Five g of tissue was ground in liquid nitrogen and then mixed with extraction buffer (2% CTAB, 2% PVP, 10 mM Tris-HCl pH 8.0, 25 mM EDTA, 2 M NaCl and 2.67% 2-mercaptoethanol). After a 10-min incubation at 65 °C, two chloroform:isoamyl alcohol 24:1 (v/v) extractions at room temperature were performed, followed by an overnight precipitation with 2 M LiCl at 4 °C. The precipitate was collected by centrifugation, and the dry pellet was resuspended in buffer containing 1 M NaCl, 0.5% SDS, 10 mM Tris-HCl pH 8.0 and 1 mM EDTA and incubated at 60 °C for 5 min. Then, one acid phenol:chloroform:isoamyl alcohol (125:24:1 (v/v)) and two 24:1 (v/v) chloroform:isoamyl alcohol extractions were performed at room temperature. The RNA in the upper phase was precipitated with 2 volumes of 100% ethanol and the precipitate collected by centrifugation. The pellet was washed twice with 70% (v/v) ethanol and resuspended in 50 µl of RNase-free water. RNeasy MinElute Cleanup (Qiagen) was used to remove any remaining protein fragments and genomic DNA was on-colum digested with DNase I (Qiagen).
The cDNA libraries were prepared using the TruSeq RNA Library Prep Kit (Illumina)

tag: tissue source

value: freshly-harvested virgin cork planks from cork oak

tag: tissue/cell type

value: phellem and phellogen

tag: harvest time

value: July


title: Innercork July replicate 3 [jl3_11171_GGCTAC]


title: Innercork July replicate 1 [jl1_11169_ACTTGA]


title: Innercork July replicate 4 [jl4_11172_CTTGTA]


title: Innercork June replicate 3 [ju4_11168_GCCAAT]

source_name: innercork (phellem+phellogenic tissue) from virgin cork_June

value: June


title: Innercork June replicate 1 [ju1_11166_GTTTCG]


title: Well A04 Sample


title: GBM22 2

source_name: untreated GBM22

value: untreated


title: Innercork June replicate 2 [ju3_11167_ATCACG]


title: Innercork April replicate 3 [ap3_11164_CAGATC]

source_name: innercork (phellem+phellogenic tissue) from virgin cork_April

value: April


title: Innercork April replicate 4 [ap4_11165_CCGTCC]


title: DA ZT16 4

city: Basel

first: Christoph

last: Handschin

address: Spitalstrasse 41

country: Switzerland

institute: Biozentrum, University of Basel

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121853_HJKCYDMXX_1_5_8_96_ZT16_DA_TACCGAGG_CCTGAACT_S40_L001
BSSE_QGF_121853_HJKCYDMXX_1_5_8_96_ZT16_DA_TACCGAGG_CCTGAACT_S40_L002

data_processing:
primary data analysis was performed with the Illumina RTA version 2.4.11 and Basecalling Version bcl2fastq-2.20.0.422.
To quantify mRNA expression levels, kallisto version 0.46.2 (Bray et al., 2016) was used. To build the index for kallisto, the GRCm38.p6 (mm10) genome assembly and the ncbiRefSeqCurated transcript annotation of the UCSC genome browser were used (Karolchik et al., 2014; Pruitt et al., 2014). microRNAs (miRbase Version 19 (Kozomara & Griffiths-Jones, 2011), translated to RefSeq IDs through BioMart (Durinck et al., 2009)) were excluded. Only one transcript was retained if several had both identical start and end coordinates, slightly flattening the annotation, preference was given to transcripts with IDs starting with "NM_". Transcripts mapping to more than one chromosome, or to random or chrUn contigs, were discarded. tximport version 1.14.0 (Soneson et al., 2015) was used to transform expression levels to flattened gene level pseudo-counts, using the "lengthScaledTPM" option. For this, RefSeq IDs were mapped to Entrez gene IDs using the org.Mm.eg.db database of R/Bioconductor version 3.10 (Gentleman et al., 2004). DESeq2 version 1.26.0 (Love et al., 2014) was used for statistical analysis of gene level differential expression. Here, log2 fold changes were estimated by the DESeq2 shrinkage estimator.
Genome_build: mm10

source_name: Gastrocnemius muscle

extract_protocol:
The glycolytic quadriceps and gastrocnemius muscles were quickly snap frozen in liquid nitrogen and stored at - 80°C. Total RNA from muscle tissues was extracted using a hybrid method combining TRI-Reagent (Sigma-Aldrich T9424) and RNeasy Mini Kit (QIAGEN 74104). RNA quantity and purity were measured with a NanoDrop OneC (ThermoFisher Scientific). RNA quality was determined on the Bioanalyzer instrument (Agilent Technologies, Santa Clara, CA, USA) using the RNA 6000 Nano Chip (Agilent, Cat# 5067-1511) and quantified by Spectrophotometry using the NanoDrop ND-1000 Instrument (NanoDrop Technologies, Wilmington, DE, USA).
Library preparation was performed with 1µg total RNA using the TruSeq Stranded mRNA Library Prep Kit High Throughput (Cat# RS-122-2103, Illumina, San Diego, CA, USA).

tag: strain

value: skeletal muscle

tag: zeitgeber time

tag: treatment group

value: Day activity

tag: treatment

value: running wheel acces during day


title: Innercork April replicate 1 [ap1_11162_CGATGT]


title: Well B04 Sample


title: CTRL ZT16 1

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121846_HJKCYDMXX_1_5_1_69_ZT16_Ctrl_CGGACAAC_TCCGGATT_S33_L001
BSSE_QGF_121846_HJKCYDMXX_1_5_1_69_ZT16_Ctrl_CGGACAAC_TCCGGATT_S33_L002

value: Night activity

value: running wheel acces during night


title: DA ZT16 2

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121851_HJKCYDMXX_1_5_6_94_ZT16_DA_AGCCTCAT_AGTAGAGA_S38_L001
BSSE_QGF_121851_HJKCYDMXX_1_5_6_94_ZT16_DA_AGCCTCAT_AGTAGAGA_S38_L002


title: DA ZT16 1

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121850_HJKCYDMXX_1_5_5_93_ZT16_DA_GATTCTGC_GACGAGAG_S37_L001
BSSE_QGF_121850_HJKCYDMXX_1_5_5_93_ZT16_DA_GATTCTGC_GACGAGAG_S37_L002


title: CTRL ZT16 3

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121848_HJKCYDMXX_1_5_3_71_ZT16_Ctrl_CTACGACA_GAGTCCAA_S35_L001
BSSE_QGF_121848_HJKCYDMXX_1_5_3_71_ZT16_Ctrl_CTACGACA_GAGTCCAA_S35_L002


title: DA ZT16 3

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121852_HJKCYDMXX_1_5_7_95_ZT16_DA_CGTTAGAA_TTCAGGTC_S39_L001
BSSE_QGF_121852_HJKCYDMXX_1_5_7_95_ZT16_DA_CGTTAGAA_TTCAGGTC_S39_L002


title: CTRL ZT16 2

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121847_HJKCYDMXX_1_5_2_70_ZT16_Ctrl_TAAGTGGT_CTTAAGCC_S34_L001
BSSE_QGF_121847_HJKCYDMXX_1_5_2_70_ZT16_Ctrl_TAAGTGGT_CTTAAGCC_S34_L002


title: CTRL ZT16 4

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121849_HJKCYDMXX_1_5_4_72_ZT16_Ctrl_TCGTAGTG_AGACTTGG_S36_L001
BSSE_QGF_121849_HJKCYDMXX_1_5_4_72_ZT16_Ctrl_TCGTAGTG_AGACTTGG_S36_L002


title: DA ZT4 4

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121845_HJKCYDMXX_1_4_8_84_ZT4_DA_ACTAAGAT_AACCGCGG_S32_L001
BSSE_QGF_121845_HJKCYDMXX_1_4_8_84_ZT4_DA_ACTAAGAT_AACCGCGG_S32_L002


title: Innercork April replicate 2 [ap2_11163_TGACCA]


title: CTRL ZT4 4

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121841_HJKCYDMXX_1_4_4_60_ZT4_Ctrl_CCGTGAAG_CAGTGGAT_S28_L001
BSSE_QGF_121841_HJKCYDMXX_1_4_4_60_ZT4_Ctrl_CCGTGAAG_CAGTGGAT_S28_L002


title: CTRL ZT4 1

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121838_HJKCYDMXX_1_4_1_57_ZT4_Ctrl_AATGCCTC_TCGATCCA_S25_L001
BSSE_QGF_121838_HJKCYDMXX_1_4_1_57_ZT4_Ctrl_AATGCCTC_TCGATCCA_S25_L002


title: CTRL ZT4 3

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121840_HJKCYDMXX_1_4_3_59_ZT4_Ctrl_TTACAGGA_TGACAAGC_S27_L001
BSSE_QGF_121840_HJKCYDMXX_1_4_3_59_ZT4_Ctrl_TTACAGGA_TGACAAGC_S27_L002


title: DA ZT4 1

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121842_HJKCYDMXX_1_4_5_81_ZT4_DA_TCCAACGC_TTGGACTT_S29_L001
BSSE_QGF_121842_HJKCYDMXX_1_4_5_81_ZT4_DA_TCCAACGC_TTGGACTT_S29_L002


title: DA ZT4 2

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121843_HJKCYDMXX_1_4_6_82_ZT4_DA_CTTGGTAT_CCAAGTCC_S30_L001
BSSE_QGF_121843_HJKCYDMXX_1_4_6_82_ZT4_DA_CTTGGTAT_CCAAGTCC_S30_L002


title: Sed ZT16 1

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121835_HJKCYDMXX_1_3_6_3705_ZT16_Ctrl_ATGTAAGT_ACTCTATG_S22_L001
BSSE_QGF_121835_HJKCYDMXX_1_3_6_3705_ZT16_Ctrl_ATGTAAGT_ACTCTATG_S22_L002

source_name: Quadriceps muscle

value: Sed

value: sedentary control


title: CTRL ZT4 2

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121839_HJKCYDMXX_1_4_2_58_ZT4_Ctrl_GGCATTCT_CTAGCTTG_S26_L001
BSSE_QGF_121839_HJKCYDMXX_1_4_2_58_ZT4_Ctrl_GGCATTCT_CTAGCTTG_S26_L002


title: Ex +3h  ZT12 3

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121834_HJKCYDMXX_1_3_5_3712_ZT12_3h_GCACGGAC_GTCTCGCA_S21_L001
BSSE_QGF_121834_HJKCYDMXX_1_3_5_3712_ZT12_3h_GCACGGAC_GTCTCGCA_S21_L002

value: TM +3h

value: treadmill, sac +3h after exhausion


title: Sed ZT16 2

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121836_HJKCYDMXX_1_3_7_3706_ZT16_Ctrl_CGGCGTGA_GCGCCTGT_S23_L001
BSSE_QGF_121836_HJKCYDMXX_1_3_7_3706_ZT16_Ctrl_CGGCGTGA_GCGCCTGT_S23_L002


title: DA ZT4 3

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121844_HJKCYDMXX_1_4_7_83_ZT4_DA_GTCGGAGC_GGTTATAA_S31_L001
BSSE_QGF_121844_HJKCYDMXX_1_4_7_83_ZT4_DA_GTCGGAGC_GGTTATAA_S31_L002


title: Ex +0h  ZT12 3

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121831_HJKCYDMXX_1_3_2_3709_ZT12_0h_GCAGAATT_ACCGGCCA_S18_L001
BSSE_QGF_121831_HJKCYDMXX_1_3_2_3709_ZT12_0h_GCAGAATT_ACCGGCCA_S18_L002

value: TM +0h

value: treadmill, sac +0h after exhausion


title: Ex +3h  ZT12 2

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121833_HJKCYDMXX_1_3_4_3711_ZT12_3h_GGTACCTT_AAGACGTC_S20_L001
BSSE_QGF_121833_HJKCYDMXX_1_3_4_3711_ZT12_3h_GGTACCTT_AAGACGTC_S20_L002


title: Ex +0h  ZT12 2

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121830_HJKCYDMXX_1_3_1_3708_ZT12_0h_ATGAGGCC_GTTAATTG_S17_L001
BSSE_QGF_121830_HJKCYDMXX_1_3_1_3708_ZT12_0h_ATGAGGCC_GTTAATTG_S17_L002


title: Sed ZT16 3

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121837_HJKCYDMXX_1_3_8_3713_ZT16_Ctrl_TAATACAG_ATATTCAC_S24_L001
BSSE_QGF_121837_HJKCYDMXX_1_3_8_3713_ZT16_Ctrl_TAATACAG_ATATTCAC_S24_L002


title: Ex +0h  ZT12 1

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121829_HJKCYDMXX_1_2_8_3707_ZT12_0h_AGTTCAGG_CCAACAGA_S16_L001
BSSE_QGF_121829_HJKCYDMXX_1_2_8_3707_ZT12_0h_AGTTCAGG_CCAACAGA_S16_L002


title: Ex +3h  ZT12 1

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121832_HJKCYDMXX_1_3_3_3710_ZT12_3h_AACGTTCC_GGAGTACT_S19_L001
BSSE_QGF_121832_HJKCYDMXX_1_3_3_3710_ZT12_3h_AACGTTCC_GGAGTACT_S19_L002


title: Sed ZT12 3

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121828_HJKCYDMXX_1_2_7_3704_ZT12_Ctrl_GACCTGAA_TTGGTGAG_S15_L001
BSSE_QGF_121828_HJKCYDMXX_1_2_7_3704_ZT12_Ctrl_GACCTGAA_TTGGTGAG_S15_L002


title: Sed ZT12 2

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121827_HJKCYDMXX_1_2_6_3703_ZT12_Ctrl_TCTCTACT_CGCGGTTC_S14_L001
BSSE_QGF_121827_HJKCYDMXX_1_2_6_3703_ZT12_Ctrl_TCTCTACT_CGCGGTTC_S14_L002


title: Sed ZT12 1

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121826_HJKCYDMXX_1_2_5_3702_ZT12_Ctrl_CTCTCGTC_TATAACCT_S13_L001
BSSE_QGF_121826_HJKCYDMXX_1_2_5_3702_ZT12_Ctrl_CTCTCGTC_TATAACCT_S13_L002


title: Sed ZT4 3

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121825_HJKCYDMXX_1_2_4_3679_ZT4_Ctrl_CCAAGTCT_AAGGATGA_S12_L001
BSSE_QGF_121825_HJKCYDMXX_1_2_4_3679_ZT4_Ctrl_CCAAGTCT_AAGGATGA_S12_L002


title: Sed ZT4 2

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121824_HJKCYDMXX_1_2_3_3678_ZT4_Ctrl_TTGGACTC_GGAAGCAG_S11_L001
BSSE_QGF_121824_HJKCYDMXX_1_2_3_3678_ZT4_Ctrl_TTGGACTC_GGAAGCAG_S11_L002


title: Ex +3h  ZT0 3

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121822_HJKCYDMXX_1_2_1_3670_ZT0_3h_AATCCGGA_CTACAGTT_S9_L001
BSSE_QGF_121822_HJKCYDMXX_1_2_1_3670_ZT0_3h_AATCCGGA_CTACAGTT_S9_L002


title: Ex +3h  ZT0 2

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121821_HJKCYDMXX_1_1_8_3686_ZT0_3h_CCGCGGTT_AGCGCTAG_S8_L001
BSSE_QGF_121821_HJKCYDMXX_1_1_8_3686_ZT0_3h_CCGCGGTT_AGCGCTAG_S8_L002


title: Ex +0h  ZT0 3

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121819_HJKCYDMXX_1_1_6_3676_ZT0_0h_GGACTTGG_CGCAGACG_S6_L001
BSSE_QGF_121819_HJKCYDMXX_1_1_6_3676_ZT0_0h_GGACTTGG_CGCAGACG_S6_L002


title: Ex +0h  ZT0 1

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121817_HJKCYDMXX_1_1_4_3674_ZT0_0h_ATCCACTG_AGGTGCGT_S4_L001
BSSE_QGF_121817_HJKCYDMXX_1_1_4_3674_ZT0_0h_ATCCACTG_AGGTGCGT_S4_L002


title: Sed ZT0 2

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121815_HJKCYDMXX_1_1_2_3672_ZT0_Ctrl_CAAGCTAG_ACATAGCG_S2_L001
BSSE_QGF_121815_HJKCYDMXX_1_1_2_3672_ZT0_Ctrl_CAAGCTAG_ACATAGCG_S2_L002


title: Sed ZT0 1

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121814_HJKCYDMXX_1_1_1_3671_ZT0_Ctrl_TGGATCGA_GTGCGATA_S1_L001
BSSE_QGF_121814_HJKCYDMXX_1_1_1_3671_ZT0_Ctrl_TGGATCGA_GTGCGATA_S1_L002


title: GBM22 1

value: GBM22 patient-derived xenograft cells


title: 18min IRI 7 days_1, GFP positive, snRNA-Seq

city: Los Angeles

first: Kari

middle: Ann

last: Koppitch

state: CA

address: 1425 San Pablo Street, BCC 312

department: Stem Cell

institute: USC

description:
Metadata.txt
Mouse_IRI_UMIcounts.txt
Krt20_day7_1
K7_1

data_processing:
Adaptor and index sequences were trimmed; unused barcodes deleted
The Cell Ranger Single-Cell Software Suite 3.0 (10X Genomics) using the STAR aligner was employed to align sequencing reads to the mouse pre-mRNA reference genome and generate BAM files as well as filtered gene-barcode matrices on the USC High Performance Cluster. Downstream analysis was carried out using the R package Seurat (Stuart et al., Cell, 2019). Nuclei with at least 300 detected features and features detected in a minimum of 3 cells were included in the downstream analysis. The day 7 post IRI replicates (labeled K7_1 and K7_2 in metadata.txt) and the day 28 post IRI replicates (labeled K28a, K28b and K28c in metdata.txt) were merged into one seurat object and a raw UMI count matrix was generated. Similarly, all control replicates (labeled Cont1, Cont2, Cont3, Cont4 in metadata.txt) were merged and a raw UMI count matrix was created.
Genome_build: mm10-1.2.0_premrna
Supplementary_files_format_and_content: Separate raw UMI count matrices for IRI and control replicates.
Supplementary_files_format_and_content: UMIcounts.txt files, Metadata.txt

source_name: Kidney Tissue

extract_protocol:
For a single-cell transcriptional profile, at time of harvesting animals were perfused with ice cold DPBS until kidneys cleared of blood. Kidney tissue was flash frozen in liquid nitrogen for later nuclear isolation. Nuclear isolation was achieved by thawing tissue and cuting into pieces smaller than a grain of rice. These pieces were immediately transferred into a 2 ml dounce (D8938 SIGMA) loaded with 1ml of NEZ Lysis Buffer with RNasin Plus RNase Inhibitor (0.4U/µl,  Promega N2615) and protease inhibitor added, on ice. Samples were then dounced on ice with 15 strokes of the looser pestle and 5 times slowly with the tighter pestle. The dounced sample was then filtered through a 100-µm Falcon Nylon Cell Strainer and spun down in a swinging bucket centrifugre at 500g for 5 min. Supernatant was removed and pellet was re-suspended in NEZ buffer minus protease inhibtor, filtered  through a 40-µm Falcon Nylon Cell Strainer, and  spun down in a swinging bucket centrifuge at 500g for 5 min.  Isolated nuclei were resuspended in a 1% BSA-DPBS +0.4U/ul Rnase Inhibitor supplemented with 1μg/mL Hoechst 33334. Nuclei were then sorted using a BD Aria I with 70μM nozzle. Nuclei were isolated from debris by gating on the Hoechst positive signal, doublets were removed with gating on a FSC-A vs. FSC-H plot and GFP positive gating set by comparison to a negative control. Nuclei were sorted into a BSA-DPBS Rnase inhibitor solution calculated to yield the same input 1% BSA-DPBS solution after dilution by FACS buffer. Flow rate was set at 1-2 and machine was cooled to 4°C throughout the sorts. After sorting nuclei solution was concentrated by spinning down at 300g for 3mins and gently removing buffer from above the pelleting level and resuspending the pellet in the remaining buffer . Post sorted nuclei quality and number was further assessed with Tryptan Blue staining and a hemocytometer and subsequently processed according to either the 10X Chromium SIngle Cell 3' v2 (CG00052) or v3 (CG000183)  user guide protocol . Completed 10X libraries were sequenced using an Illumina NextSeq® 500/550 High Output Kit v2 at The Translational Genomics Center at the Children’s Hospital Los Angeles Center for Personalized Medicine.
10X Genomics Chromium Single Cell 3’ (v2 or v3) protocol
snRNA-Seq

treatment_protocol: Mice were genotyped and 11- to 19-week-old male mice, 24- 30g were anesthetized with an intraperitoneal injection of a ketamine/xylazine (105 mg ketamine/kg; 10 mg xylazine/kg). Body temperature was maintained at 36.5-37°C throughout the procedure. The kidneys were exposed by a midline abdominal incision and both renal pedicles were clamped using non-traumatic microaneurysm clips (Roboz Surgical Instrument Co.). Restoration of blood flow was monitored by the return of normal color after removal of the clamps. All the mice received intraperitoneal (i.p) 1 ml of normal saline at the end of the procedure. Sham-operated mice underwent the same procedure except for clamping of the pedicles.

value: Kidney

tag: cell/nuclei type

value: adult injured tubules

value: Krt20T2A-CE; INTACTnuGFP/+

value: Tamoxifen 0.05mg/g

tag: injury level

value: Serum Creatinine at 48 hours post IRI 0.255 (mg/dL) /Serum Creatinine at Harvest 0.177 (mg/dL)

tag: protocol

value: 18min IRI 7 days

tag: fraction

value: nuclear polyA RNA


title: Sed ZT0 3

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121816_HJKCYDMXX_1_1_3_3673_ZT0_Ctrl_GCTTGTCA_GAACATAC_S3_L001
BSSE_QGF_121816_HJKCYDMXX_1_1_3_3673_ZT0_Ctrl_GCTTGTCA_GAACATAC_S3_L002

tag: tissue

value: skeletal muscle


title: 18min IRI 28 days_3, GFP positive, snRNA-Seq

description:
Metadata.txt
Mouse_IRI_UMIcounts.txt
Krt20_day28_3
K28c

value: Serum Creatinine at 48 hours post IRI 0.228 (mg/dL) / Serum Creatinine at Harvest 0.074 (mg/dL)

value: 18min IRI 28 days


title: 18min IRI 28 days_2, GFP positive, snRNA-Seq

description:
Metadata.txt
Mouse_IRI_UMIcounts.txt
Krt20_day28_2
K28b

value: Serum Creatinine at 48 hours post IRI 0.208 (mg/dL) / Serum Creatinine at Harvest 0.114 (mg/dL)


title: Sham_2, GFP positive, snRNA-Seq

description:
Metadata.txt
Mouse_control_UMIcounts.txt
Sham_2
Cont4

value: adult nephron

value: Six2TGC; Rosa26rtTA ; pTRE-H2BeGFP

value: Doxycyline Food (625 mg/kg)

value: Serum Creatinine at Harvest 0.122 (mg/dL)

value: Sham


title: Sham_3, GFP positive, snRNA-Seq

description:
Metadata.txt
Mouse_control_UMIcounts.txt
Sham_3
Cont2

value: Serum Creatinine at Harvest 0.100 (mg/dL)


title: Sham_1, GFP positive, snRNA-Seq

description:
Metadata.txt
Mouse_control_UMIcounts.txt
Sham_1
Cont3

value: Kidney


title: HC69 DEXA

city: Cleveland

first: Konstantin

middle: S

last: Leskov

state: OH

address: 2109 Adelbert Rd., WRT205

department: Molecular Biology and Microbiology

institute: Case Western Reserve University

data_processing:
Dropseq Tools 1.0
STAR-2.5.1b
picard-tools-1.93
samtools-1.8
Genome_build: hg18, pNL43HIV
Supplementary_files_format_and_content: csv, digital gene expression matrix

growth_protocol: DMEM

extract_protocol:
dropseq
Illumina Nextera XT

treatment_protocol: DEXA

value: microglial cell line HC69

tag: cell status

value: immortalized

value: DEXA


title: HC69 Control

tag: cell line

value: Control


title: Muscle Cells

city: Zurich

first: Ge

last: Tan

address: Winterthurerstrasse 190

department: Functional Genomics Center Zurich

institute: University of Zurich

description: 10x raw data contains cell barcode and UMI, cell barcode and UMI, cDNA reads

data_processing:
Chromium data was demultiplexed with cellranger mkfastq v2.0.2.
Gene-cell count matrix was generated by cellranger count v2.0.2 against Ensembl GRCm38.p5 reference genome.
Genome_build: GRCm38.p5
Supplementary_files_format_and_content: Filtered count matrix from cellranger count is stored in three files: barcodes.tsv, genes.tsv and matrix.mtx.

source_name: muscle endothelial cells

extract_protocol:
Mashed muscle was enzymatically digested in digestion buffer containing 2 mg/ml Dispase II, 2 mg/ml Collagenase IV, 2 mM CaCl2 and 2% BSA in PBS at 37°C for 10 min, with gentle shaking every 3 min. Viable endothelial cells (CD31+, CD45-, SYTOX blue-) were sorted by a FACS Aria III (BD Bioscience) sorter, and ECs were directly sorted into ice cold collecting medium (EGM2). The collected ECs were placed on ice (no more than 30 min) until loading into 10x genomics chromium.
Library construction was performed according to the 10x Chromium Single Cell 3' Reagent Kit v2.

treatment_protocol: Mice were individually housed in open cages equipped with an upright running wheel device for the duration of the intervention. Non-running control (sedentary) mice were also single caged in cages of equal dimensions but without running wheels. Continuous recording of wheel movements was performed out of which total distance (km), speed (m.s−1), and number of running bouts was calculated.

value: gastrocnemius muscle

value: no treatment

tag: cell type

value: endothelial cells (EC)


title: MT-D701

city: QingDao

first: Qilai

last: Huang

address: Binhai road 72#

institute: Shandong University

description:
Processed data files:
SNP DiR-seq ZR-75-1-rep1.txt
SNP DiR-seq ZR-75-1-rep2.txt
SNP DiR-seq ZR-75-1-rep3.txt

data_processing:
The next-generation sequencing Data quality statistical software Cutadapt (version 1.9.1) was used to remove the adapters and low-quality sequences from the original sequencing Data (Pass Filter Data) to obtain Clean Data for subsequent information analysis.
The overlap area between read1 and read2 of Clean Reads was combined using Pandaseq (version 2.7) to produce complete sequences.
According to the Barcode sequence of read1 of each sample, the spliced Tag starting position is split into the corresponding sample with perfect matching, and the result is saved in FASTQ file.
Supplementary_files_format_and_content: Matrix table with raw gene counts for every barcode and every sample (bundled into a tar archive)
Supplementary_files_format_and_content: SNP_barcode_id.txt
Supplementary_files_format_and_content: Samples to library relationships information.txt

extract_protocol:
Twenty-four hours post-transfection, cells were washed twice and harvested in 1 × PBS, and Total RNA was extracted from all surviving cells using RNeasy Plus Mini Kit (74136, QIAGEN). We treated the mRNA with RapidOut DNA Removal Kit (K2981, Thermo Scientific) to remove the trace amount of genomic DNA residue according to the product manual. The purified RNA was then subjected to reverse transcription with High-Capacity cDNA Reverse Transcription Kits (4374967, Applied Biosystems). Briefly, 1.5μg RNA was added into 10μl of 2× RT Master Mix and made up to the final 20μl with nuclease-free water. The reactions were incubated at 25°C for 10 min, followed by 120 min at 37°C, then were inactivated Reverse Transcriptase by heating to 85°C for 5 min. The cDNA products were stored at -20°C or -80°C and ready for qPCR analysis and preparing the NGS sequencing library.
RNA libraries were prepared for sequencing using standard Illumina protocols
We combined the 35 libraries into seven i7 indexes for Illumina sequencing.
To help the user demultiplex the raw data, we provided all the necessary information in "Sample to library relationship information.txt".

value: breast cancer cell line ZR-75-1

tag: sample type

value: multiplexed

tag: molecule

value: total RNA


title: D702

description:
Processed data files:
SNP DiR-seq MCF7-rep1.txt
SNP DiR-seq MCF7-rep2.txt
SNP DiR-seq MCF7-rep3.txt

value: breast cancer cell line MCF7


title: MT-D702

description:
Processed data files:
SNP DiR-seq MDA-MB-453-rep1.txt
SNP DiR-seq MDA-MB-453-rep2.txt
SNP DiR-seq MDA-MB-453-rep3.txt
SNP DiR-seq BT-20-rep1.txt
SNP DiR-seq BT-20-rep2.txt
SNP DiR-seq BT-20-rep3.txt

value: breast cancer cell lines MDA-MB-453, BT-20


title: 18min IRI 28 days_1, GFP positive, snRNA-Seq

description:
Metadata.txt
Mouse_IRI_UMIcounts.txt
Krt20_day28_1
K28a

value: adult injured tubules

value: Krt20T2A-CE; INTACTnuGFP/+

value: Tamoxifen 0.05mg/g

value: Serum Creatinine at 48 hours post IRI 0.488 (mg/dL) / Serum Creatinine at Harvest 0.093 (mg/dL)

value: 18min IRI 28 days

value: nuclear polyA RNA


title: Non_surgery, GFP positive, snRNA-Seq

description:
Metadata.txt
Mouse_control_UMIcounts.txt
Non_surgery
Cont1

value: Kidney

value: adult nephron

value: Six2TGC; Rosa26rtTA ; pTRE-H2BeGFP

value: Doxycyline Food (625 mg/kg)


title: D703

description:
Processed data files:
SNP DiR-seq plasmid(MCF7)-rep1.txt
SNP DiR-seq plasmid(MCF7)-rep2.txt

molecule: other

organism: synthetic construct

value: plasmid library (MCF7)

value: plasmid mixture


title: GroupB rep2 [476]

city: Clayton

first: Stephane

last: Chappaz

state: Victoria

address: Monash Biomedicine Discovery Institute, Level 3, Building 76, 19 Innovation Walk

department: Anatomy and Developmental Biology

country: Australia

institute: Monash University

data_processing:
Rsubread package (version 1.20.3) was used for read mapping and summarisation.
Sequenced reads were mapped using the subjunc function with default parameters, and with paired fastq files given to readfile1 and readfile2 arguments.
Gene-level summarisation was carried out using the featureCounts function and in-built mm10 annotation to get gene counts, with argument isPairedEnd=TRUE .
Genome_build: mm10
Supplementary_files_format_and_content: Text file containing Entrez gene identifiers and gene counts.

source_name: mature B cells_GroupB

extract_protocol:
RNA was extracted with Qiagen RNA extraction kit.
RNA libraries were prepared following Illumina's TruSeq RNA Sample Preparation v2 Guide.

tag: strain background

tag: genotype

value: WT

tag: age

value: 10 weeks

value: Mature B cells residing in the bone marrow

tag: group

value: GroupB

tag: cell subtype

value: Mature B cells FACS-sorted as B220high IgM+ CD93-

tag: collection date


title: GroupB rep3 [478]

value: 11 weeks

tag: tissue/cell type


title: RNA-sequencing STING-KO TNF, 10 ng/ml, 4 hours 4_S1_L001

first: Alexander

last: Poltorak

state: Massachusetts

address: 150 Harrison avenue

institute: Tufts University

data_processing:
the resulted data were demultiplexed using CASAVA version 1.4
Tophat2 alignment of raw paoired reads to mm10 genome
Cuffdiff
Genome_build: mm10
Supplementary_files_format_and_content: genes.fpkm_tracking

source_name: heart endothelial cells

growth_protocol: ES cell–derived NS cells were routinely generated by re-plating d 7 adherent neural differentiation cultures (typically 2–3 × 106 cells into a T75 flask) on uncoated plastic in NS-A medium (Euroclone, Milan, Italy) supplemented with modified N2 and 10 ng/ml of both EGF and FGF-2 (NS expansion medium).

extract_protocol:
RNA was prepared according to manufacture's instructions.
Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit (Part# 0801-0303). Briefly, DNA was end-repaired using a combination of T4 DNA polymerase, E. coli DNA Pol I large fragment (Klenow polymerase) and T4 polynucleotide kinase. The blunt, phosphorylated ends were treated with Klenow fragment (32 to 52 exo minus) and dATP to yield a protruding 3- 'A' base for ligation of Illumina's adapters which have a single 'T' base overhang at the 3’ end. After adapter ligation DNA was PCR amplified with Illumina primers for 15 cycles and library fragments of ~250 bp (insert plus adaptor and PCR primer sequences) were band isolated from an agarose gel. The purified DNA was captured on an Illumina flow cell for cluster generation. Libraries were sequenced on the Genome Analyzer following the manufacturer's protocols.

tag: strain

value: STING-KO

tag: passages

value: TNF, 10 ng/ml, 4 hours


title: GroupA rep3 [245]

source_name: mature B cells_GroupA

value: 100 weeks

value: GroupA


title: GroupB rep1 [474]

value: 9 weeks


title: neonatal brain_FD spermatozoa_95°C1h_rep1

city: Chiba

first: Ryoko

last: Araki

address: Anagawa4-9-1, Inage-ku

country: Japan

institute: National Institute of Radiological Sciences, National Institutes for Quantum and Radiological Science and Technology

hyb_protocol: Slides were hybridized to SurePrint G3 Mouse Gene Expression v2 8x60K Microarray (Agilent) according to manufacturer’s protocols.

scan_protocol: The hybridized array was immediately scanned with an Agilent Microarray Scanner D (Agilent Technologies, Inc.).

data_processing: Agilent Feature Extraction Software (v11.0.1.1) was used to read out and process the microarray image files.

source_name: brain of neonate #1_1_1 derived from freeze-dried spermatozoa treated at 95 °C for 1 h

label_protocol: RNA labeling were performed by using the Agilent One-Color Microarray-Based Gene Expression Analysis protocol (Agilent Technology, V 6.5, 2010).

extract_protocol: Total RNA was isolated using RNeasy mini kit (QIAGEN) according to the manufacturer's protocol.

value: brain

tag: developmental stage


title: neonatal brain_FD spermatozoa_95°C1h_rep4

source_name: brain of neonate #1_1_5 derived from freeze-dried spermatozoa treated at 95 °C for 1 h


title: neonatal brain_FD spermatozoa_95°C1h_rep2

source_name: brain of neonate #1_1_2 derived from freeze-dried spermatozoa treated at 95 °C for 1 h


title: neonatal brain_FD spermatozoa_5Gy_rep1

source_name: brain of neonate #1 derived from 5 Gy irradiated freeze-dried spermatozoa


title: neonatal brain_FD spermatozoa_control_rep1

source_name: brain of neonate #1 derived from freeze-dried spermatozoa


title: neonatal brain_FD spermatozoa_control_rep4

source_name: brain of neonate #4 derived from freeze-dried spermatozoa


title: GroupA rep1 [243]

value: 98 weeks


title: neonatal brain_FD spermatozoa_95°C1h_rep3

source_name: brain of neonate #1_1_3 derived from freeze-dried spermatozoa treated at 95 °C for 1 h


title: neonatal brain_FD spermatozoa_5Gy_rep2

source_name: brain of neonate #2 derived from 5 Gy irradiated freeze-dried spermatozoa


title: neonatal brain_FD spermatozoa_5Gy_rep3

source_name: brain of neonate #3 derived from 5 Gy irradiated freeze-dried spermatozoa


title: neonatal brain_FD spermatozoa_5Gy_rep4

source_name: brain of neonate #4 derived from 5 Gy irradiated freeze-dried spermatozoa


title: neonatal brain_fresh spermatozoa_rep4

source_name: brain of neonate #3_2 derived from fresh spermatozoa


title: GroupA rep2 [244]

value: 99 weeks


title: Apoptosis-resistant, rep3 [D164]

source_name: mature B cells_Apoptosis-resistant

value: Bak-/- BaxD/D

value: Apoptosis-resistant


title: neonatal brain_fresh spermatozoa_rep1

source_name: brain of neonate #1_1 derived from fresh spermatozoa


title: Apoptosis-resistant, rep2 [D092]


title: neonatal brain_FD spermatozoa_control_rep3

source_name: brain of neonate #3 derived from freeze-dried spermatozoa


title: Apoptosis-sensitive, rep3 [D178]

source_name: mature B cells_Apoptosis-sensitive

value: Bak-/- Baxfl/fl

value: Apoptosis-sensitive


title: Apoptosis-sensitive, rep1 [D110]

value: 10 weeks


title: neonatal brain_FD spermatozoa_control_rep2

source_name: brain of neonate #2 derived from freeze-dried spermatozoa


title: Apoptosis-resistant, rep1 [D091]

value: Mature B cells residing in the bone marrow


title: Apoptosis-sensitive, rep2 [D113]


title: neonatal brain_fresh spermatozoa_rep3

source_name: brain of neonate #3_1 derived from fresh spermatozoa


title: hnRNPM_iCLIP

city: hefei

first: Xiaolin

last: Wang

address: anhui,hefei,huangshan road 443

institute: USTC

description: hnRNPM iCLIP

data_processing:
The randomers were registered and the 2-nt barcodes for identifying PCR duplicates were removed, followed by trimming relevant sequencing adapters.
Trimmed reads were aligned to the human genome (hg19) allowing one mismatch using Bowtie (-v 1 -m 1 -a --best --strata).
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files include crosslinked sites

source_name: AGS cells

growth_protocol: The AGS cells were maintained under standard culture conditions with DMEM containing 10% FBS at 37°C and 5% CO2.

extract_protocol:
The crosslinked RNA was extracted by using TRizol reagent according to the manufacturer’s instructions.
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: Flag-hnRNPM was overexpressed in the AGS cells.

value: AGS

value: Flag-hnRNPM overexpression

tag: antibody

value: anti-FLAG (Sigma, F1804)


title: neonatal brain_fresh spermatozoa_rep2

source_name: brain of neonate #1_4 derived from fresh spermatozoa

tag: tissue


title: RHP5402 scRNA-Seq

city: Singapore

first: Florent

last: Ginhoux

address: 8A Biomedical Grove, Immunos Building, Level 3

country: Singapore

institute: Singapore Immunology Network (SIgN), A*STAR

data_processing:
Raw reads were aligned to the human reference genome GRCh38 from GENCODE using RSEM program version 1.3.0 with default parameters. Gene expression values in transcripts per million (TPM) were calculated using the same RSEM program and the human GENCODE annotation version 25.
Genome_build: GRCh38.p7
Supplementary_files_format_and_content: Tab-delimited text files include TPM values for each Sample

source_name: Human Healthy Lung

extract_protocol:
Cells isolated from organs were indexed-sorted using the Indexed-sorting panel on a BD FACSARIAIII (BD Biosciences) into 96 well plates containing 3 µL Lysis buffer using a 70 µm nozzle
Single cell cDNA libraries were made using the SMARTSeq v2 protocol (Picelli et al., 2014) with the following modification: Use of 200 pg cDNA with 1/5 reaction of Illumina Nextera XT kit (Illumina, San Diego, CA, USA). All samples were subjected to an indexed paired-end sequencing run of 2x151 cycles on an Illumina HiSeq 4000 system (Illumina, San Diego, CA, USA) (300 samples/lane).

value: Human Healthy Lung

value: dendritic cells and monocytes


title: RHP5403 scRNA-Seq


title: RHP5395 scRNA-Seq


title: RHP5399 scRNA-Seq


title: RHP5397 scRNA-Seq


title: RHP5401 scRNA-Seq


title: RHP5404 scRNA-Seq


title: RHP5393 scRNA-Seq


title: RHP5396 scRNA-Seq


title: RHP5391 scRNA-Seq


title: RHP5400 scRNA-Seq


title: RHP5392 scRNA-Seq


title: RHP5390 scRNA-Seq


title: RHP5388 scRNA-Seq


title: RHP5389 scRNA-Seq


title: RHP5398 scRNA-Seq


title: RHP5387 scRNA-Seq


title: RHP5386 scRNA-Seq


title: RHP5383 scRNA-Seq


title: RHP5382 scRNA-Seq


title: RHP5381 scRNA-Seq


title: RHP5384 scRNA-Seq


title: RHP5380 scRNA-Seq


title: RHP5379 scRNA-Seq


title: RHP5394 scRNA-Seq


title: RHP5375 scRNA-Seq


title: RHP5372 scRNA-Seq


title: RHP5373 scRNA-Seq


title: RHP5364 scRNA-Seq


title: RHP5369 scRNA-Seq


title: RHP5370 scRNA-Seq


title: RHP5362 scRNA-Seq


title: RHP5371 scRNA-Seq


title: RHP5356 scRNA-Seq


title: RHP5358 scRNA-Seq


title: RHP5355 scRNA-Seq


title: RHP5354 scRNA-Seq


title: RHP5374 scRNA-Seq


title: RHP5359 scRNA-Seq


title: RHP5351 scRNA-Seq


title: RHP5378 scRNA-Seq


title: RHP5352 scRNA-Seq


title: RHP5377 scRNA-Seq


title: RHP5368 scRNA-Seq


title: RHP5376 scRNA-Seq


title: 18min IRI 7 days_2, GFP positive, snRNA-Seq

description:
Metadata.txt
Mouse_IRI_UMIcounts.txt
Krt20_day7_2
K7_2

source_name: Kidney Tissue

value: Kidney

tag: cell/nuclei type

value: adult injured tubules

value: Krt20T2A-CE; INTACTnuGFP/+

tag: treatment

value: Tamoxifen 0.05mg/g

tag: injury level

value: Serum Creatinine at 48 hours post IRI 0.133 (mg/dL) /Serum Creatinine at Harvest 0.149 (mg/dL)

tag: protocol

value: 18min IRI 7 days

tag: fraction

value: nuclear polyA RNA


title: RHP5350 scRNA-Seq

tag: cell type


title: Ex +0h  ZT0 2

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121818_HJKCYDMXX_1_1_5_3675_ZT0_0h_AAGTCCAA_TATGAGTA_S5_L001
BSSE_QGF_121818_HJKCYDMXX_1_1_5_3675_ZT0_0h_AAGTCCAA_TATGAGTA_S5_L002

source_name: Quadriceps muscle

value: skeletal muscle

tag: zeitgeber time

tag: treatment group

value: TM +0h

value: treadmill, sac +0h after exhausion


title: RHP5385 scRNA-Seq


title: RHP5366 scRNA-Seq


title: RHP5365 scRNA-Seq


title: Sed ZT4 1

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121823_HJKCYDMXX_1_2_2_3677_ZT4_Ctrl_GGCTTAAG_TCGTGACC_S10_L001
BSSE_QGF_121823_HJKCYDMXX_1_2_2_3677_ZT4_Ctrl_GGCTTAAG_TCGTGACC_S10_L002

value: Sed

value: sedentary control


title: RHP5363 scRNA-Seq


title: RHP5361 scRNA-Seq


title: RHP5357 scRNA-Seq


title: RHP5360 scRNA-Seq


title: RHP5353 scRNA-Seq


title: RHP5349 scRNA-Seq


title: RHP5347 scRNA-Seq


title: RHP5340 scRNA-Seq


title: RHP5334 scRNA-Seq


title: RHP5345 scRNA-Seq


title: RHP5339 scRNA-Seq


title: RHP5346 scRNA-Seq


title: RHP5335 scRNA-Seq


title: RHP5344 scRNA-Seq


title: RHP5343 scRNA-Seq


title: RHP5331 scRNA-Seq


title: RHP5342 scRNA-Seq


title: RHP5330 scRNA-Seq


title: RHP5328 scRNA-Seq


title: RHP5329 scRNA-Seq


title: RHP5341 scRNA-Seq


title: RHP5333 scRNA-Seq


title: RHP5348 scRNA-Seq


title: RHP5336 scRNA-Seq


title: RHP5327 scRNA-Seq


title: RHP5337 scRNA-Seq


title: RHP5321 scRNA-Seq


title: RHP5323 scRNA-Seq


title: RHP5367 scRNA-Seq


title: RHP5324 scRNA-Seq


title: RHP5326 scRNA-Seq


title: RHP5320 scRNA-Seq


title: RHP5325 scRNA-Seq


title: RHP5322 scRNA-Seq


title: RHP5318 scRNA-Seq


title: RHP5317 scRNA-Seq


title: RHP5315 scRNA-Seq


title: RHP5338 scRNA-Seq


title: RHP5316 scRNA-Seq


title: RHP5319 scRNA-Seq


title: RHP5314 scRNA-Seq


title: RHP5312 scRNA-Seq


title: RHP5311 scRNA-Seq


title: RHP5309 scRNA-Seq


title: RHP5308 scRNA-Seq


title: RHP5310 scRNA-Seq


title: RHP5304 scRNA-Seq


title: RHP5303 scRNA-Seq


title: RHP5306 scRNA-Seq


title: RHP5297 scRNA-Seq


title: RHP5302 scRNA-Seq


title: RHP5300 scRNA-Seq


title: RHP5294 scRNA-Seq


title: RHP5299 scRNA-Seq


title: RHP5298 scRNA-Seq


title: RHP5288 scRNA-Seq


title: RHP5296 scRNA-Seq


title: RHP5332 scRNA-Seq


title: RHP5286 scRNA-Seq


title: RHP5305 scRNA-Seq


title: RHP5289 scRNA-Seq


title: RHP5284 scRNA-Seq


title: RHP5283 scRNA-Seq


title: RHP5293 scRNA-Seq


title: RHP5281 scRNA-Seq


title: RHP5313 scRNA-Seq


title: RHP5295 scRNA-Seq


title: RHP5279 scRNA-Seq


title: RHP5291 scRNA-Seq


title: RHP5285 scRNA-Seq


title: RHP5290 scRNA-Seq


title: RHP5282 scRNA-Seq


title: RHP5276 scRNA-Seq


title: RHP5301 scRNA-Seq


title: RHP5280 scRNA-Seq


title: RHP5272 scRNA-Seq


title: RHP5266 scRNA-Seq


title: RHP5273 scRNA-Seq


title: RHP5267 scRNA-Seq


title: RHP5265 scRNA-Seq


title: RHP5268 scRNA-Seq


title: RHP5292 scRNA-Seq


title: RHP5277 scRNA-Seq


title: RHP5278 scRNA-Seq


title: RHP5262 scRNA-Seq


title: RHP5287 scRNA-Seq


title: RHP5259 scRNA-Seq


title: RHP5275 scRNA-Seq


title: RHP5271 scRNA-Seq


title: RHP5270 scRNA-Seq


title: RHP5258 scRNA-Seq


title: RHP5269 scRNA-Seq


title: RHP5274 scRNA-Seq


title: Ex +3h  ZT0 1

description:
The L001 and L002 raw files were produced from the same library but were analyzed separately. L001 and L002 raw files are represented by independent SRR.
BSSE_QGF_121820_HJKCYDMXX_1_1_7_3685_ZT0_3h_TTATAACC_GATATCGA_S7_L001
BSSE_QGF_121820_HJKCYDMXX_1_1_7_3685_ZT0_3h_TTATAACC_GATATCGA_S7_L002

value: TM +3h

value: treadmill, sac +3h after exhausion


title: RHP5264 scRNA-Seq


title: RHP5253 scRNA-Seq


title: RHP5263 scRNA-Seq


title: RHP5260 scRNA-Seq


title: RHP5251 scRNA-Seq


title: RHP5257 scRNA-Seq


title: RHP5244 scRNA-Seq


title: RHP5249 scRNA-Seq


title: RHP5256 scRNA-Seq


title: RHP5261 scRNA-Seq


title: RHP5255 scRNA-Seq


title: RHP5254 scRNA-Seq


title: RHP5242 scRNA-Seq


title: RHP5252 scRNA-Seq


title: RHP5250 scRNA-Seq


title: RHP5307 scRNA-Seq


title: RHP5248 scRNA-Seq


title: RHP5239 scRNA-Seq


title: RHP5237 scRNA-Seq


title: RHP5238 scRNA-Seq


title: RHP5234 scRNA-Seq


title: RHP5235 scRNA-Seq


title: RHP5236 scRNA-Seq


title: RHP5247 scRNA-Seq


title: RHP5246 scRNA-Seq


title: RHP5245 scRNA-Seq


title: RHP5231 scRNA-Seq


title: RHP5232 scRNA-Seq


title: RHP5241 scRNA-Seq


title: RHP5229 scRNA-Seq


title: RHP5226 scRNA-Seq


title: RHP5227 scRNA-Seq


title: RHP5222 scRNA-Seq


title: RHP5223 scRNA-Seq


title: RHP5233 scRNA-Seq


title: RHP5243 scRNA-Seq


title: RHP5228 scRNA-Seq


title: RHP5230 scRNA-Seq


title: RHP5225 scRNA-Seq


title: RHP5224 scRNA-Seq


title: RHP5219 scRNA-Seq


title: RHP5218 scRNA-Seq


title: RHP5216 scRNA-Seq


title: RHP5217 scRNA-Seq


title: RHP5240 scRNA-Seq


title: RHP5212 scRNA-Seq


title: RHP5221 scRNA-Seq


title: RHP5220 scRNA-Seq


title: RHP5209 scRNA-Seq


title: RHP5215 scRNA-Seq


title: RHP5211 scRNA-Seq


title: RHP5208 scRNA-Seq


title: RHP5214 scRNA-Seq


title: RHP5185 scRNA-Seq


title: RHP5199 scRNA-Seq


title: RHP5207 scRNA-Seq


title: RHP5200 scRNA-Seq


title: RHP5184 scRNA-Seq


title: RHP5187 scRNA-Seq


title: RHP5201 scRNA-Seq


title: RHP5206 scRNA-Seq


title: RHP5188 scRNA-Seq


title: RHP5190 scRNA-Seq


title: RHP5205 scRNA-Seq


title: RHP5204 scRNA-Seq


title: RHP5198 scRNA-Seq


title: RHP5197 scRNA-Seq


title: RHP5186 scRNA-Seq


title: RHP5202 scRNA-Seq


title: RHP5194 scRNA-Seq


title: RHP5196 scRNA-Seq


title: RHP5213 scRNA-Seq


title: RHP5193 scRNA-Seq


title: RHP5203 scRNA-Seq


title: RHP5195 scRNA-Seq


title: RHP5192 scRNA-Seq


title: RHP5191 scRNA-Seq


title: RHP5181 scRNA-Seq


title: RHP5189 scRNA-Seq


title: RHP5183 scRNA-Seq


title: RHP5182 scRNA-Seq


title: RHP5180 scRNA-Seq


title: RHP5210 scRNA-Seq


title: RHP5179 scRNA-Seq


title: RHP5170 scRNA-Seq


title: RHP5176 scRNA-Seq


title: RHP5177 scRNA-Seq


title: RHP5178 scRNA-Seq


title: RHP5164 scRNA-Seq

source_name: Human Peripheral Blood

value: Human Peripheral Blood


title: RHP5173 scRNA-Seq

value: Human Healthy Lung


title: RHP5175 scRNA-Seq

value: dendritic cells and monocytes


title: RHP5169 scRNA-Seq


title: RHP5174 scRNA-Seq


title: RHP5172 scRNA-Seq


title: RHP5171 scRNA-Seq


title: RHP5161 scRNA-Seq


title: RHP5160 scRNA-Seq


title: RHP5159 scRNA-Seq


title: RHP5168 scRNA-Seq


title: RHP5166 scRNA-Seq


title: RHP5167 scRNA-Seq


title: RHP5156 scRNA-Seq


title: RHP5163 scRNA-Seq


title: RHP5155 scRNA-Seq


title: RHP5162 scRNA-Seq


title: RHP5157 scRNA-Seq


title: RHP5154 scRNA-Seq


title: RHP5158 scRNA-Seq


title: RHP5151 scRNA-Seq


title: RHP5165 scRNA-Seq


title: RHP5152 scRNA-Seq


title: RHP5153 scRNA-Seq


title: RHP5150 scRNA-Seq


title: RHP5149 scRNA-Seq


title: RHP5148 scRNA-Seq


title: RHP5146 scRNA-Seq


title: RHP5144 scRNA-Seq


title: RHP5142 scRNA-Seq


title: RHP5143 scRNA-Seq


title: RHP5138 scRNA-Seq


title: RHP5139 scRNA-Seq


title: RHP5135 scRNA-Seq


title: RHP5137 scRNA-Seq


title: RHP5136 scRNA-Seq


title: RHP5134 scRNA-Seq


title: RHP5133 scRNA-Seq


title: RHP5130 scRNA-Seq


title: RHP5127 scRNA-Seq


title: RHP5126 scRNA-Seq


title: RHP5124 scRNA-Seq


title: RHP5132 scRNA-Seq


title: RHP5120 scRNA-Seq


title: RHP5141 scRNA-Seq


title: RHP5140 scRNA-Seq


title: RHP5145 scRNA-Seq


title: RHP5118 scRNA-Seq


title: RHP5131 scRNA-Seq


title: RHP5128 scRNA-Seq


title: RHP5125 scRNA-Seq


title: RHP5111 scRNA-Seq


title: RHP5113 scRNA-Seq


title: RHP5108 scRNA-Seq


title: RHP5112 scRNA-Seq


title: RHP5123 scRNA-Seq


title: RHP5103 scRNA-Seq


title: RHP5147 scRNA-Seq


title: RHP5122 scRNA-Seq


title: RHP5101 scRNA-Seq


title: RHP5121 scRNA-Seq


title: RHP5115 scRNA-Seq


title: RHP5114 scRNA-Seq


title: RHP5100 scRNA-Seq


title: RHP5099 scRNA-Seq


title: RHP5098 scRNA-Seq


title: RHP5117 scRNA-Seq


title: RHP5116 scRNA-Seq


title: RHP5097 scRNA-Seq


title: RHP5110 scRNA-Seq


title: RHP5129 scRNA-Seq


title: RHP5109 scRNA-Seq


title: RHP5095 scRNA-Seq


title: RHP5094 scRNA-Seq


title: RHP5106 scRNA-Seq


title: RHP5091 scRNA-Seq


title: RHP5090 scRNA-Seq


title: RHP5092 scRNA-Seq


title: RHP5093 scRNA-Seq


title: RHP5107 scRNA-Seq


title: RHP5089 scRNA-Seq


title: RHP5087 scRNA-Seq


title: RHP5105 scRNA-Seq


title: RHP5086 scRNA-Seq


title: RHP5084 scRNA-Seq


title: RHP5104 scRNA-Seq


title: RHP5102 scRNA-Seq


title: RHP5119 scRNA-Seq


title: RHP5083 scRNA-Seq


title: RHP5079 scRNA-Seq


title: RHP5078 scRNA-Seq


title: RHP5075 scRNA-Seq


title: RHP5096 scRNA-Seq


title: RHP5074 scRNA-Seq


title: RHP5069 scRNA-Seq


title: RHP5068 scRNA-Seq


title: RHP5088 scRNA-Seq


title: RHP5063 scRNA-Seq


title: RHP5066 scRNA-Seq


title: RHP5085 scRNA-Seq


title: RHP5082 scRNA-Seq


title: RHP5062 scRNA-Seq


title: RHP5081 scRNA-Seq


title: RHP5060 scRNA-Seq


title: RHP5057 scRNA-Seq


title: RHP5055 scRNA-Seq


title: RHP5076 scRNA-Seq


title: RHP5080 scRNA-Seq


title: RHP5056 scRNA-Seq


title: RHP5054 scRNA-Seq


title: RHP5077 scRNA-Seq


title: RHP5053 scRNA-Seq


title: RHP5050 scRNA-Seq


title: RHP5049 scRNA-Seq


title: RHP5046 scRNA-Seq


title: RHP5048 scRNA-Seq


title: RHP5072 scRNA-Seq


title: RHP5073 scRNA-Seq


title: RHP5044 scRNA-Seq


title: RHP5067 scRNA-Seq


title: RHP5070 scRNA-Seq


title: RHP5058 scRNA-Seq


title: RHP5065 scRNA-Seq


title: RHP5061 scRNA-Seq


title: RHP5064 scRNA-Seq


title: RHP5041 scRNA-Seq


title: RHP5051 scRNA-Seq


title: RHP5039 scRNA-Seq


title: RHP5040 scRNA-Seq


title: RHP5071 scRNA-Seq


title: RHP5059 scRNA-Seq


title: RHP5037 scRNA-Seq


title: RHP5035 scRNA-Seq


title: RHP5036 scRNA-Seq


title: RHP5043 scRNA-Seq


title: RHP5047 scRNA-Seq


title: RHP5034 scRNA-Seq


title: RHP5045 scRNA-Seq


title: RHP5032 scRNA-Seq


title: RHP5038 scRNA-Seq


title: RHP5033 scRNA-Seq


title: RHP5042 scRNA-Seq


title: RHP5029 scRNA-Seq


title: RHP5028 scRNA-Seq


title: RHP5030 scRNA-Seq


title: RHP5026 scRNA-Seq


title: RHP5031 scRNA-Seq


title: RHP5024 scRNA-Seq


title: RHP5022 scRNA-Seq


title: RHP5025 scRNA-Seq


title: RHP5023 scRNA-Seq


title: RHP5020 scRNA-Seq


title: RHP5021 scRNA-Seq


title: RHP5019 scRNA-Seq


title: RHP5052 scRNA-Seq


title: RHP5018 scRNA-Seq


title: RHP5016 scRNA-Seq


title: RHP5015 scRNA-Seq


title: RHP5013 scRNA-Seq


title: RHP5008 scRNA-Seq


title: RHP5007 scRNA-Seq


title: RHP5012 scRNA-Seq


title: RHP5011 scRNA-Seq


title: RHP5014 scRNA-Seq


title: RHP5006 scRNA-Seq


title: RHP5027 scRNA-Seq


title: RHP5003 scRNA-Seq


title: RHP5000 scRNA-Seq


title: RHP5002 scRNA-Seq


title: RHP5001 scRNA-Seq


title: RHP4999 scRNA-Seq


title: RHP5004 scRNA-Seq


title: RHP5017 scRNA-Seq


title: RHP4997 scRNA-Seq


title: RHP5009 scRNA-Seq


title: RHP4993 scRNA-Seq


title: RHP4992 scRNA-Seq


title: RHP4991 scRNA-Seq


title: RHP4995 scRNA-Seq


title: RHP4994 scRNA-Seq


title: RHP4987 scRNA-Seq


title: RHP5010 scRNA-Seq


title: RHP4988 scRNA-Seq


title: RHP4989 scRNA-Seq


title: RHP4990 scRNA-Seq


title: RHP4985 scRNA-Seq


title: RHP4982 scRNA-Seq


title: RHP4983 scRNA-Seq


title: RHP4981 scRNA-Seq


title: RHP5005 scRNA-Seq


title: RHP4998 scRNA-Seq


title: RHP4984 scRNA-Seq


title: RHP4979 scRNA-Seq


title: RHP4976 scRNA-Seq


title: RHP4978 scRNA-Seq


title: RHP4974 scRNA-Seq


title: RHP4975 scRNA-Seq


title: RHP4973 scRNA-Seq


title: RHP4971 scRNA-Seq


title: RHP4970 scRNA-Seq


title: RHP4969 scRNA-Seq


title: RHP4966 scRNA-Seq


title: RHP4965 scRNA-Seq


title: RHP4963 scRNA-Seq


title: RHP4964 scRNA-Seq


title: RHP4962 scRNA-Seq


title: RHP4961 scRNA-Seq


title: RHP4980 scRNA-Seq


title: RHP4959 scRNA-Seq


title: RHP4977 scRNA-Seq


title: RHP4958 scRNA-Seq


title: RHP4956 scRNA-Seq


title: RHP4955 scRNA-Seq


title: RHP4954 scRNA-Seq


title: RHP4953 scRNA-Seq


title: RHP4952 scRNA-Seq


title: RHP4972 scRNA-Seq


title: RHP4949 scRNA-Seq


title: RHP4950 scRNA-Seq


title: RHP4951 scRNA-Seq


title: RHP4948 scRNA-Seq


title: RHP4947 scRNA-Seq


title: RHP4968 scRNA-Seq


title: RHP4967 scRNA-Seq


title: RHP4944 scRNA-Seq


title: RHP4946 scRNA-Seq


title: RHP4942 scRNA-Seq


title: RHP4945 scRNA-Seq


title: RHP4960 scRNA-Seq


title: RHP4940 scRNA-Seq


title: RHP4941 scRNA-Seq


title: RHP4939 scRNA-Seq


title: RHP4957 scRNA-Seq


title: RHP4938 scRNA-Seq


title: RHP4937 scRNA-Seq


title: RHP4936 scRNA-Seq


title: RHP4933 scRNA-Seq


title: RHP4935 scRNA-Seq


title: RHP4934 scRNA-Seq


title: RHP4931 scRNA-Seq


title: RHP4930 scRNA-Seq


title: RHP4932 scRNA-Seq


title: RHP4929 scRNA-Seq


title: RHP4928 scRNA-Seq


title: RHP4943 scRNA-Seq


title: RHP4927 scRNA-Seq


title: RHP4926 scRNA-Seq


title: RHP4924 scRNA-Seq


title: RHP4921 scRNA-Seq


title: RHP4922 scRNA-Seq


title: RHP4920 scRNA-Seq


title: RHP4923 scRNA-Seq


title: RHP4919 scRNA-Seq


title: RHP4916 scRNA-Seq


title: RHP4918 scRNA-Seq


title: RHP4917 scRNA-Seq


title: RHP4914 scRNA-Seq


title: RHP4913 scRNA-Seq


title: RHP4911 scRNA-Seq


title: RHP4915 scRNA-Seq


title: RHP4912 scRNA-Seq


title: RHP4910 scRNA-Seq


title: RHP4909 scRNA-Seq


title: RHP4925 scRNA-Seq


title: RHP4908 scRNA-Seq


title: RHP4907 scRNA-Seq


title: RHP4899 scRNA-Seq


title: RHP4906 scRNA-Seq


title: RHP4901 scRNA-Seq


title: RHP4905 scRNA-Seq


title: RHP4898 scRNA-Seq


title: RHP4903 scRNA-Seq


title: RHP4904 scRNA-Seq


title: RHP4896 scRNA-Seq


title: RHP4902 scRNA-Seq


title: RHP4888 scRNA-Seq

source_name: Human Healthy Spleen

value: Human Healthy Spleen


title: RHP4897 scRNA-Seq


title: RHP4886 scRNA-Seq


title: RHP4895 scRNA-Seq


title: RHP4894 scRNA-Seq


title: RHP4881 scRNA-Seq


title: RHP4900 scRNA-Seq


title: RHP4892 scRNA-Seq


title: RHP4891 scRNA-Seq


title: RHP4890 scRNA-Seq


title: RHP4879 scRNA-Seq


title: RHP4878 scRNA-Seq


title: RHP4880 scRNA-Seq


title: RHP4889 scRNA-Seq


title: RHP4893 scRNA-Seq


title: RHP4876 scRNA-Seq


title: RHP4877 scRNA-Seq


title: RHP4870 scRNA-Seq


title: RHP4882 scRNA-Seq


title: RHP4872 scRNA-Seq


title: RHP4887 scRNA-Seq


title: RHP4864 scRNA-Seq


title: RHP4862 scRNA-Seq


title: RHP4863 scRNA-Seq


title: RHP4885 scRNA-Seq


title: RHP4857 scRNA-Seq


title: RHP4854 scRNA-Seq


title: RHP4884 scRNA-Seq


title: RHP4853 scRNA-Seq


title: RHP4996 scRNA-Seq


title: RHP4850 scRNA-Seq


title: RHP4883 scRNA-Seq


title: RHP4849 scRNA-Seq


title: RHP4848 scRNA-Seq


title: RHP4847 scRNA-Seq


title: RHP4875 scRNA-Seq


title: RHP4842 scRNA-Seq


title: RHP4874 scRNA-Seq


title: RHP4837 scRNA-Seq


title: RHP4873 scRNA-Seq


title: RHP4845 scRNA-Seq


title: RHP4841 scRNA-Seq


title: RHP4871 scRNA-Seq


title: RHP4832 scRNA-Seq


title: RHP4869 scRNA-Seq


title: RHP4829 scRNA-Seq


title: RHP4867 scRNA-Seq


title: RHP4868 scRNA-Seq


title: RHP4866 scRNA-Seq


title: RHP4865 scRNA-Seq


title: RHP4860 scRNA-Seq


title: RHP4831 scRNA-Seq


title: RHP4826 scRNA-Seq


title: RHP4859 scRNA-Seq


title: RHP4861 scRNA-Seq


title: RHP4858 scRNA-Seq


title: RHP4855 scRNA-Seq


title: RHP4856 scRNA-Seq


title: RHP4825 scRNA-Seq


title: RHP4851 scRNA-Seq


title: RHP4852 scRNA-Seq


title: RHP4822 scRNA-Seq


title: RHP4846 scRNA-Seq


title: RHP4840 scRNA-Seq


title: RHP4843 scRNA-Seq


title: RHP4819 scRNA-Seq


title: RHP4838 scRNA-Seq


title: RHP4839 scRNA-Seq


title: RHP4817 scRNA-Seq


title: RHP4835 scRNA-Seq


title: RHP4836 scRNA-Seq


title: RHP4813 scRNA-Seq


title: RHP4815 scRNA-Seq


title: RHP4834 scRNA-Seq


title: RHP4833 scRNA-Seq


title: RHP4809 scRNA-Seq


title: RHP4827 scRNA-Seq


title: RHP4828 scRNA-Seq


title: RHP4830 scRNA-Seq


title: RHP4824 scRNA-Seq


title: RHP4823 scRNA-Seq


title: RHP4821 scRNA-Seq


title: RHP4805 scRNA-Seq


title: RHP4814 scRNA-Seq


title: RHP4818 scRNA-Seq


title: RHP4804 scRNA-Seq


title: RHP4808 scRNA-Seq


title: RHP4986 scRNA-Seq


title: RHP4801 scRNA-Seq


title: RHP4816 scRNA-Seq


title: RHP4811 scRNA-Seq


title: RHP4812 scRNA-Seq


title: RHP4820 scRNA-Seq


title: RHP4810 scRNA-Seq


title: RHP4807 scRNA-Seq


title: RHP4806 scRNA-Seq


title: RHP4796 scRNA-Seq


title: RHP4795 scRNA-Seq


title: RHP4793 scRNA-Seq


title: RHP4803 scRNA-Seq


title: RHP4790 scRNA-Seq


title: RHP4792 scRNA-Seq


title: RHP4802 scRNA-Seq


title: RHP4797 scRNA-Seq


title: RHP4787 scRNA-Seq


title: RHP4799 scRNA-Seq


title: RHP4798 scRNA-Seq


title: RHP4786 scRNA-Seq


title: RHP4794 scRNA-Seq


title: RHP4784 scRNA-Seq


title: RHP4791 scRNA-Seq


title: RHP4788 scRNA-Seq


title: RHP4785 scRNA-Seq


title: RHP4800 scRNA-Seq


title: RHP4780 scRNA-Seq


title: RHP4844 scRNA-Seq


title: RHP4789 scRNA-Seq


title: RHP4783 scRNA-Seq


title: RHP4776 scRNA-Seq


title: RHP4779 scRNA-Seq


title: RHP4772 scRNA-Seq


title: RHP4770 scRNA-Seq


title: RHP4777 scRNA-Seq


title: RHP4767 scRNA-Seq


title: RHP4766 scRNA-Seq


title: RHP4775 scRNA-Seq


title: RHP4765 scRNA-Seq


title: RHP4773 scRNA-Seq


title: RHP4763 scRNA-Seq


title: RHP4771 scRNA-Seq


title: RHP4758 scRNA-Seq


title: RHP4754 scRNA-Seq


title: RHP4756 scRNA-Seq


title: RHP4774 scRNA-Seq


title: RHP4768 scRNA-Seq


title: RHP4752 scRNA-Seq


title: RHP4749 scRNA-Seq


title: RHP4769 scRNA-Seq


title: RHP4764 scRNA-Seq


title: RHP4782 scRNA-Seq


title: RHP4746 scRNA-Seq


title: RHP4781 scRNA-Seq


title: RHP4744 scRNA-Seq


title: RHP4742 scRNA-Seq


title: RHP4743 scRNA-Seq


title: RHP4745 scRNA-Seq


title: RHP4741 scRNA-Seq


title: RHP4761 scRNA-Seq


title: RHP4762 scRNA-Seq


title: RHP4778 scRNA-Seq


title: RHP4738 scRNA-Seq


title: RHP4737 scRNA-Seq


title: RHP4759 scRNA-Seq


title: RHP4735 scRNA-Seq


title: RHP4757 scRNA-Seq


title: RHP4731 scRNA-Seq


title: RHP4755 scRNA-Seq


title: RHP4730 scRNA-Seq


title: RHP4728 scRNA-Seq


title: RHP4724 scRNA-Seq


title: RHP4751 scRNA-Seq


title: RHP4753 scRNA-Seq


title: RHP4750 scRNA-Seq


title: RHP4748 scRNA-Seq


title: RHP4736 scRNA-Seq


title: RHP4721 scRNA-Seq


title: RHP4760 scRNA-Seq


title: RHP4747 scRNA-Seq


title: RHP4718 scRNA-Seq


title: RHP4740 scRNA-Seq


title: RHP4739 scRNA-Seq


title: RHP4734 scRNA-Seq


title: RHP4713 scRNA-Seq


title: RHP4714 scRNA-Seq


title: RHP4711 scRNA-Seq


title: RHP4733 scRNA-Seq


title: RHP4707 scRNA-Seq


title: RHP4706 scRNA-Seq


title: RHP4732 scRNA-Seq


title: RHP4719 scRNA-Seq


title: RHP4709 scRNA-Seq


title: RHP4729 scRNA-Seq


title: RHP4726 scRNA-Seq


title: RHP4701 scRNA-Seq


title: RHP4725 scRNA-Seq


title: RHP4727 scRNA-Seq


title: RHP4699 scRNA-Seq


title: RHP4698 scRNA-Seq


title: RHP4722 scRNA-Seq


title: RHP4696 scRNA-Seq


title: RHP4695 scRNA-Seq


title: RHP4723 scRNA-Seq


title: RHP4694 scRNA-Seq


title: RHP4692 scRNA-Seq


title: RHP4717 scRNA-Seq


title: RHP4720 scRNA-Seq


title: RHP4716 scRNA-Seq


title: RHP4712 scRNA-Seq


title: RHP4708 scRNA-Seq


title: RHP4710 scRNA-Seq


title: RHP4686 scRNA-Seq


title: RHP4687 scRNA-Seq


title: RHP4684 scRNA-Seq


title: RHP4705 scRNA-Seq


title: RHP4704 scRNA-Seq


title: RHP4693 scRNA-Seq


title: RHP4679 scRNA-Seq


title: RHP4678 scRNA-Seq


title: RHP4677 scRNA-Seq


title: RHP4703 scRNA-Seq


title: RHP4676 scRNA-Seq


title: RHP4702 scRNA-Seq


title: RHP4672 scRNA-Seq


title: RHP4685 scRNA-Seq


title: RHP4700 scRNA-Seq


title: RHP4697 scRNA-Seq


title: RHP4665 scRNA-Seq


title: RHP4691 scRNA-Seq


title: RHP4670 scRNA-Seq


title: RHP4688 scRNA-Seq


title: RHP4689 scRNA-Seq


title: RHP4657 scRNA-Seq


title: RHP4655 scRNA-Seq


title: RHP4683 scRNA-Seq


title: RHP4682 scRNA-Seq


title: RHP4680 scRNA-Seq


title: RHP4690 scRNA-Seq


title: RHP4674 scRNA-Seq


title: RHP4673 scRNA-Seq


title: RHP4675 scRNA-Seq


title: RHP4649 scRNA-Seq


title: RHP4647 scRNA-Seq


title: RHP4669 scRNA-Seq


title: RHP4671 scRNA-Seq


title: RHP4645 scRNA-Seq


title: RHP4681 scRNA-Seq


title: RHP4715 scRNA-Seq


title: RHP4648 scRNA-Seq


title: RHP4666 scRNA-Seq


title: RHP4667 scRNA-Seq


title: RHP4663 scRNA-Seq


title: RHP4662 scRNA-Seq


title: RHP4641 scRNA-Seq


title: RHP4640 scRNA-Seq


title: RHP4660 scRNA-Seq


title: RHP4658 scRNA-Seq


title: RHP4656 scRNA-Seq


title: RHP4636 scRNA-Seq


title: RHP4654 scRNA-Seq


title: RHP4637 scRNA-Seq


title: RHP4668 scRNA-Seq


title: RHP4653 scRNA-Seq


title: RHP4634 scRNA-Seq


title: RHP4632 scRNA-Seq


title: RHP4633 scRNA-Seq


title: RHP4630 scRNA-Seq


title: RHP4661 scRNA-Seq


title: RHP4652 scRNA-Seq


title: RHP4650 scRNA-Seq


title: RHP4664 scRNA-Seq


title: RHP4646 scRNA-Seq


title: RHP4622 scRNA-Seq


title: RHP4651 scRNA-Seq


title: RHP4623 scRNA-Seq


title: RHP4643 scRNA-Seq


title: RHP4659 scRNA-Seq


title: RHP4642 scRNA-Seq


title: RHP4639 scRNA-Seq


title: RHP4644 scRNA-Seq


title: RHP4616 scRNA-Seq


title: RHP4619 scRNA-Seq


title: RHP4631 scRNA-Seq


title: RHP4635 scRNA-Seq


title: RHP4628 scRNA-Seq


title: RHP4612 scRNA-Seq


title: RHP4629 scRNA-Seq


title: RHP4626 scRNA-Seq


title: RHP4627 scRNA-Seq


title: RHP4610 scRNA-Seq


title: RHP4638 scRNA-Seq


title: RHP4620 scRNA-Seq


title: RHP4618 scRNA-Seq


title: RHP4615 scRNA-Seq


title: RHP4617 scRNA-Seq


title: RHP4614 scRNA-Seq


title: RHP4604 scRNA-Seq


title: RHP4601 scRNA-Seq


title: RHP4613 scRNA-Seq


title: RHP4625 scRNA-Seq


title: RHP4599 scRNA-Seq


title: RHP4611 scRNA-Seq


title: RHP4595 scRNA-Seq


title: RHP4608 scRNA-Seq


title: RHP4621 scRNA-Seq


title: RHP4607 scRNA-Seq


title: RHP4605 scRNA-Seq


title: RHP4606 scRNA-Seq


title: RHP4603 scRNA-Seq


title: RHP4624 scRNA-Seq


title: RHP4589 scRNA-Seq


title: RHP4602 scRNA-Seq


title: RHP4590 scRNA-Seq


title: RHP4581 scRNA-Seq


title: RHP4582 scRNA-Seq


title: RHP4587 scRNA-Seq


title: RHP4596 scRNA-Seq


title: RHP4597 scRNA-Seq


title: RHP4598 scRNA-Seq


title: RHP4600 scRNA-Seq


title: RHP4580 scRNA-Seq


title: RHP4594 scRNA-Seq


title: RHP4593 scRNA-Seq


title: RHP4609 scRNA-Seq


title: RHP4576 scRNA-Seq


title: RHP4592 scRNA-Seq


title: RHP4570 scRNA-Seq


title: RHP4571 scRNA-Seq


title: RHP4591 scRNA-Seq


title: RHP4572 scRNA-Seq


title: RHP4565 scRNA-Seq


title: RHP4566 scRNA-Seq


title: RHP4567 scRNA-Seq


title: RHP4561 scRNA-Seq


title: RHP4562 scRNA-Seq


title: RHP4586 scRNA-Seq


title: RHP4588 scRNA-Seq


title: RHP4557 scRNA-Seq


title: RHP4556 scRNA-Seq


title: RHP4579 scRNA-Seq


title: RHP4583 scRNA-Seq


title: RHP4578 scRNA-Seq


title: RHP4575 scRNA-Seq


title: RHP4574 scRNA-Seq


title: RHP4577 scRNA-Seq


title: RHP4564 scRNA-Seq


title: RHP4553 scRNA-Seq


title: RHP4573 scRNA-Seq


title: RHP4585 scRNA-Seq


title: RHP4569 scRNA-Seq


title: RHP4568 scRNA-Seq


title: RHP4546 scRNA-Seq


title: RHP4547 scRNA-Seq


title: RHP4560 scRNA-Seq


title: RHP4543 scRNA-Seq


title: RHP4559 scRNA-Seq


title: RHP4563 scRNA-Seq


title: RHP4542 scRNA-Seq


title: RHP4584 scRNA-Seq


title: RHP4558 scRNA-Seq


title: RHP4540 scRNA-Seq


title: RHP4554 scRNA-Seq


title: RHP4555 scRNA-Seq


title: RHP4551 scRNA-Seq


title: RHP4552 scRNA-Seq


title: RHP4550 scRNA-Seq


title: RHP4536 scRNA-Seq


title: RHP4538 scRNA-Seq


title: RHP4537 scRNA-Seq


title: RHP4545 scRNA-Seq


title: RHP4544 scRNA-Seq


title: RHP4549 scRNA-Seq


title: RHP4530 scRNA-Seq


title: RHP4548 scRNA-Seq


title: RHP4532 scRNA-Seq


title: RHP4535 scRNA-Seq


title: RHP4539 scRNA-Seq


title: RHP4533 scRNA-Seq


title: RHP4534 scRNA-Seq


title: RHP4529 scRNA-Seq


title: RHP4520 scRNA-Seq


title: RHP4521 scRNA-Seq


title: RHP4524 scRNA-Seq


title: RHP4527 scRNA-Seq


title: RHP4519 scRNA-Seq


title: RHP4525 scRNA-Seq


title: RHP4541 scRNA-Seq


title: RHP4522 scRNA-Seq


title: RHP4531 scRNA-Seq


title: RHP4523 scRNA-Seq


title: RHP4526 scRNA-Seq


title: RHP4515 scRNA-Seq


title: RHP4514 scRNA-Seq


title: RHP4513 scRNA-Seq


title: RHP4516 scRNA-Seq


title: RHP4528 scRNA-Seq


title: RHP4512 scRNA-Seq


title: RHP4511 scRNA-Seq


title: RHP4510 scRNA-Seq


title: RHP4517 scRNA-Seq


title: RHP4507 scRNA-Seq


title: RHP4509 scRNA-Seq


title: RHP4506 scRNA-Seq


title: RHP4508 scRNA-Seq


title: RHP4505 scRNA-Seq


title: RHP4504 scRNA-Seq


title: RHP4502 scRNA-Seq


title: RHP4500 scRNA-Seq


title: RHP4503 scRNA-Seq


title: RHP4497 scRNA-Seq


title: RHP4496 scRNA-Seq


title: RHP4495 scRNA-Seq


title: RHP4491 scRNA-Seq


title: RHP4499 scRNA-Seq


title: RHP4494 scRNA-Seq


title: RHP4493 scRNA-Seq


title: RHP4501 scRNA-Seq


title: RHP4492 scRNA-Seq


title: RHP4490 scRNA-Seq


title: RHP4488 scRNA-Seq


title: RHP4486 scRNA-Seq


title: RHP4485 scRNA-Seq


title: RHP4487 scRNA-Seq


title: RHP4484 scRNA-Seq


title: RHP4481 scRNA-Seq


title: RHP4483 scRNA-Seq


title: RHP4498 scRNA-Seq


title: RHP4480 scRNA-Seq


title: RHP4479 scRNA-Seq


title: RHP4478 scRNA-Seq


title: RHP4476 scRNA-Seq


title: RHP4477 scRNA-Seq


title: RHP4474 scRNA-Seq


title: RHP4489 scRNA-Seq


title: RHP4473 scRNA-Seq


title: RHP4471 scRNA-Seq


title: RHP4472 scRNA-Seq


title: RHP4475 scRNA-Seq


title: RHP4482 scRNA-Seq


title: RHP4470 scRNA-Seq


title: RHP4468 scRNA-Seq


title: RHP4518 scRNA-Seq


title: RHP4466 scRNA-Seq


title: RHP4467 scRNA-Seq


title: RHP4463 scRNA-Seq


title: RHP4465 scRNA-Seq


title: RHP4464 scRNA-Seq


title: RHP4460 scRNA-Seq


title: RHP4462 scRNA-Seq


title: RHP4459 scRNA-Seq


title: RHP4458 scRNA-Seq


title: RHP4456 scRNA-Seq


title: RHP4457 scRNA-Seq


title: RHP4455 scRNA-Seq


title: RHP4453 scRNA-Seq


title: RHP4454 scRNA-Seq


title: RHP4451 scRNA-Seq


title: RHP4452 scRNA-Seq


title: RHP4469 scRNA-Seq


title: RHP4449 scRNA-Seq


title: RHP4450 scRNA-Seq


title: RHP4447 scRNA-Seq


title: RHP4445 scRNA-Seq


title: RHP4446 scRNA-Seq


title: RHP4444 scRNA-Seq


title: RHP4442 scRNA-Seq


title: RHP4443 scRNA-Seq


title: RHP4439 scRNA-Seq


title: RHP4437 scRNA-Seq


title: RHP4440 scRNA-Seq


title: RHP4461 scRNA-Seq


title: RHP4438 scRNA-Seq


title: RHP4436 scRNA-Seq


title: RHP4441 scRNA-Seq


title: RHP4435 scRNA-Seq


title: RHP4142 scRNA-Seq


title: RHP4433 scRNA-Seq


title: RHP4434 scRNA-Seq


title: RHP4141 scRNA-Seq


title: RHP4140 scRNA-Seq


title: RHP4139 scRNA-Seq


title: RHP4135 scRNA-Seq


title: RHP4136 scRNA-Seq


title: RHP4134 scRNA-Seq


title: RHP4448 scRNA-Seq


title: RHP4138 scRNA-Seq


title: RHP4133 scRNA-Seq


title: RHP4137 scRNA-Seq


title: RHP4131 scRNA-Seq


title: RHP4132 scRNA-Seq


title: RHP4127 scRNA-Seq


title: RHP4130 scRNA-Seq


title: RHP4126 scRNA-Seq


title: RHP4129 scRNA-Seq


title: RHP4125 scRNA-Seq


title: RHP4128 scRNA-Seq


title: RHP4121 scRNA-Seq


title: RHP4124 scRNA-Seq


title: RHP4117 scRNA-Seq


title: RHP4118 scRNA-Seq


title: RHP4119 scRNA-Seq


title: RHP4122 scRNA-Seq


title: RHP4115 scRNA-Seq


title: RHP4116 scRNA-Seq


title: RHP4114 scRNA-Seq


title: RHP4111 scRNA-Seq


title: RHP4123 scRNA-Seq


title: RHP4109 scRNA-Seq


title: RHP4107 scRNA-Seq


title: RHP4120 scRNA-Seq


title: RHP4106 scRNA-Seq


title: RHP4112 scRNA-Seq


title: RHP4105 scRNA-Seq


title: RHP4103 scRNA-Seq


title: RHP4102 scRNA-Seq


title: RHP4100 scRNA-Seq


title: RHP4098 scRNA-Seq


title: RHP4097 scRNA-Seq


title: RHP4099 scRNA-Seq


title: RHP4104 scRNA-Seq


title: RHP4095 scRNA-Seq


title: RHP4096 scRNA-Seq


title: RHP4094 scRNA-Seq


title: RHP4091 scRNA-Seq


title: RHP4090 scRNA-Seq


title: RHP4093 scRNA-Seq


title: RHP4088 scRNA-Seq


title: RHP4113 scRNA-Seq


title: RHP4092 scRNA-Seq


title: RHP4089 scRNA-Seq


title: RHP4110 scRNA-Seq


title: RHP4085 scRNA-Seq


title: RHP4101 scRNA-Seq


title: RHP4108 scRNA-Seq


title: RHP4086 scRNA-Seq


title: RHP4087 scRNA-Seq


title: RHP4083 scRNA-Seq


title: RHP4084 scRNA-Seq


title: RHP4082 scRNA-Seq


title: RHP4081 scRNA-Seq


title: RHP4080 scRNA-Seq


title: RHP4079 scRNA-Seq


title: RHP4077 scRNA-Seq


title: RHP4076 scRNA-Seq


title: RHP4075 scRNA-Seq


title: RHP4073 scRNA-Seq


title: RHP4071 scRNA-Seq


title: RHP4072 scRNA-Seq


title: RHP4069 scRNA-Seq


title: RHP4068 scRNA-Seq


title: RHP4067 scRNA-Seq


title: RHP4064 scRNA-Seq


title: RHP4066 scRNA-Seq


title: RHP4065 scRNA-Seq


title: RHP4062 scRNA-Seq


title: RHP4060 scRNA-Seq


title: RHP4063 scRNA-Seq


title: RHP4061 scRNA-Seq


title: RHP4058 scRNA-Seq


title: RHP4053 scRNA-Seq


title: RHP4052 scRNA-Seq


title: RHP4059 scRNA-Seq


title: RHP4078 scRNA-Seq


title: RHP4057 scRNA-Seq


title: RHP4054 scRNA-Seq


title: RHP4051 scRNA-Seq


title: RHP4012 scRNA-Seq


title: RHP4013 scRNA-Seq


title: RHP4055 scRNA-Seq


title: RHP4074 scRNA-Seq


title: RHP4008 scRNA-Seq


title: RHP4010 scRNA-Seq


title: RHP4005 scRNA-Seq


title: RHP4070 scRNA-Seq


title: RHP4006 scRNA-Seq


title: RHP4003 scRNA-Seq


title: RHP4002 scRNA-Seq


title: RHP4001 scRNA-Seq


title: RHP3999 scRNA-Seq


title: RHP3998 scRNA-Seq


title: RHP4056 scRNA-Seq


title: RHP3997 scRNA-Seq


title: RHP3996 scRNA-Seq


title: RHP4000 scRNA-Seq


title: RHP3993 scRNA-Seq


title: RHP3990 scRNA-Seq


title: RHP3991 scRNA-Seq


title: RHP4011 scRNA-Seq


title: RHP3989 scRNA-Seq


title: RHP3995 scRNA-Seq


title: RHP4009 scRNA-Seq


title: RHM5882 scRNA-Seq


title: RHP4007 scRNA-Seq


title: RHP3986 scRNA-Seq


title: RHP3994 scRNA-Seq


title: RHP3987 scRNA-Seq


title: RHP4004 scRNA-Seq


title: RHP3988 scRNA-Seq


title: RHM5877 scRNA-Seq


title: RHM5878 scRNA-Seq


title: RHM5876 scRNA-Seq


title: RHM5880 scRNA-Seq


title: RHM5875 scRNA-Seq


title: RHM5873 scRNA-Seq


title: RHM5881 scRNA-Seq


title: RHM5871 scRNA-Seq


title: RHM5869 scRNA-Seq


title: RHM5872 scRNA-Seq


title: RHM5870 scRNA-Seq


title: RHP3992 scRNA-Seq


title: RHM5864 scRNA-Seq


title: RHM5866 scRNA-Seq


title: RHM5863 scRNA-Seq


title: RHM5861 scRNA-Seq


title: RHM5867 scRNA-Seq


title: RHM5865 scRNA-Seq


title: RHM5862 scRNA-Seq


title: RHM5855 scRNA-Seq


title: RHM5860 scRNA-Seq


title: RHM5879 scRNA-Seq


title: RHM5854 scRNA-Seq


title: RHM5856 scRNA-Seq


title: RHM5858 scRNA-Seq


title: RHM5852 scRNA-Seq


title: RHM5874 scRNA-Seq


title: RHM5850 scRNA-Seq


title: RHM5857 scRNA-Seq


title: RHM5849 scRNA-Seq


title: RHM5853 scRNA-Seq


title: RHM5851 scRNA-Seq


title: RHM5868 scRNA-Seq


title: RHM5848 scRNA-Seq


title: RHM5847 scRNA-Seq


title: RHM5844 scRNA-Seq


title: RHM5846 scRNA-Seq


title: RHM5845 scRNA-Seq


title: RHM5843 scRNA-Seq


title: RHM5841 scRNA-Seq


title: RHM5842 scRNA-Seq


title: RHM5838 scRNA-Seq


title: RHM5859 scRNA-Seq


title: RHM5840 scRNA-Seq


title: RHM5837 scRNA-Seq


title: RHM5834 scRNA-Seq


title: RHM5836 scRNA-Seq


title: RHM5835 scRNA-Seq


title: RHM5833 scRNA-Seq


title: RHM5832 scRNA-Seq


title: RHM5831 scRNA-Seq


title: RHM5830 scRNA-Seq


title: RHM5829 scRNA-Seq


title: RHM5826 scRNA-Seq


title: RHM5828 scRNA-Seq


title: RHM5827 scRNA-Seq


title: RHM5824 scRNA-Seq


title: RHM5822 scRNA-Seq


title: RHM5821 scRNA-Seq


title: RHM5823 scRNA-Seq


title: RHM5820 scRNA-Seq


title: RHM5819 scRNA-Seq


title: RHM5815 scRNA-Seq


title: RHM5818 scRNA-Seq


title: RHM5839 scRNA-Seq


title: RHM5813 scRNA-Seq


title: RHM5816 scRNA-Seq


title: RHM5810 scRNA-Seq


title: RHM5809 scRNA-Seq


title: RHM5808 scRNA-Seq


title: RHM5817 scRNA-Seq


title: RHM5811 scRNA-Seq


title: RHM5807 scRNA-Seq


title: RHM5812 scRNA-Seq


title: RHM5805 scRNA-Seq


title: RHM5825 scRNA-Seq


title: RHM5803 scRNA-Seq


title: RHM5802 scRNA-Seq


title: RHM5806 scRNA-Seq


title: RHM5801 scRNA-Seq


title: RHM5804 scRNA-Seq


title: RHM5799 scRNA-Seq


title: RHM5797 scRNA-Seq


title: RHM5800 scRNA-Seq


title: RHM5814 scRNA-Seq


title: RHM5795 scRNA-Seq


title: RHM5796 scRNA-Seq


title: RHM5793 scRNA-Seq


title: RHM5792 scRNA-Seq


title: RHM5788 scRNA-Seq


title: RHM5794 scRNA-Seq


title: RHM5790 scRNA-Seq


title: RHM5767 scRNA-Seq


title: RHM5787 scRNA-Seq


title: RHM5756 scRNA-Seq


title: RHM5757 scRNA-Seq


title: RHM5759 scRNA-Seq


title: RHM5764 scRNA-Seq


title: RHM5758 scRNA-Seq


title: RHM5761 scRNA-Seq


title: RHM5766 scRNA-Seq


title: RHM5798 scRNA-Seq


title: RHM5748 scRNA-Seq


title: RHM5763 scRNA-Seq


title: RHM5762 scRNA-Seq


title: RHM5791 scRNA-Seq


title: RHM5752 scRNA-Seq


title: RHM5746 scRNA-Seq


title: RHM5789 scRNA-Seq


title: RHM5760 scRNA-Seq


title: RHM5749 scRNA-Seq


title: RHM5747 scRNA-Seq


title: RHM5765 scRNA-Seq


title: RHM5751 scRNA-Seq


title: RHM5745 scRNA-Seq


title: RHM5750 scRNA-Seq


title: RHM5754 scRNA-Seq


title: RHM5744 scRNA-Seq


title: RHM5742 scRNA-Seq


title: RHM5755 scRNA-Seq


title: RHM5743 scRNA-Seq


title: RHM5753 scRNA-Seq


title: RHM5741 scRNA-Seq


title: RHM5736 scRNA-Seq


title: RHM5739 scRNA-Seq


title: RHM5733 scRNA-Seq


title: RHM5732 scRNA-Seq


title: RHM5737 scRNA-Seq


title: RHM5729 scRNA-Seq


title: RHM5728 scRNA-Seq


title: RHM5740 scRNA-Seq


title: RHM5735 scRNA-Seq


title: RHM5721 scRNA-Seq


title: RHM5722 scRNA-Seq


title: RHM5720 scRNA-Seq


title: RHM5724 scRNA-Seq


title: RHM5727 scRNA-Seq


title: RHM5725 scRNA-Seq


title: RHM5719 scRNA-Seq


title: RHM5730 scRNA-Seq


title: RHM5723 scRNA-Seq


title: RHM5718 scRNA-Seq


title: RHM5731 scRNA-Seq


title: RHM5717 scRNA-Seq


title: RHM5715 scRNA-Seq


title: RHM5734 scRNA-Seq


title: RHM5716 scRNA-Seq


title: RHM5726 scRNA-Seq


title: RHM5712 scRNA-Seq


title: RHM5714 scRNA-Seq


title: RHM5710 scRNA-Seq


title: RHM5711 scRNA-Seq


title: RHM5709 scRNA-Seq


title: RHM5706 scRNA-Seq


title: RHM5708 scRNA-Seq


title: RHM5703 scRNA-Seq


title: RHM5707 scRNA-Seq


title: RHM5705 scRNA-Seq


title: RHM5699 scRNA-Seq


title: RHM5701 scRNA-Seq


title: RHM5696 scRNA-Seq


title: RHM5693 scRNA-Seq


title: RHM5697 scRNA-Seq


title: RHM5691 scRNA-Seq


title: RHM5702 scRNA-Seq


title: RHM5713 scRNA-Seq


title: RHM5694 scRNA-Seq


title: RHH5141 scRNA-Seq

source_name: Human Pathology Liver

value: Human Pathology Liver


title: RHM5698 scRNA-Seq


title: RHM5695 scRNA-Seq


title: RHH5140 scRNA-Seq


title: RHH5139 scRNA-Seq


title: RHM5700 scRNA-Seq


title: RHM5704 scRNA-Seq


title: RHH5138 scRNA-Seq


title: RHM5692 scRNA-Seq


title: RHM5738 scRNA-Seq


title: RHH5137 scRNA-Seq


title: RHH5136 scRNA-Seq


title: RHH5134 scRNA-Seq


title: RHH5133 scRNA-Seq


title: RHH5132 scRNA-Seq


title: RHH5131 scRNA-Seq


title: RHH5129 scRNA-Seq


title: RHH5130 scRNA-Seq


title: RHH5127 scRNA-Seq


title: RHH5128 scRNA-Seq


title: RHH5125 scRNA-Seq


title: RHH5126 scRNA-Seq


title: RHH5124 scRNA-Seq


title: RHH5123 scRNA-Seq


title: RHH5121 scRNA-Seq


title: RHH5119 scRNA-Seq


title: RHH5142 scRNA-Seq


title: RHH5120 scRNA-Seq


title: RHH5115 scRNA-Seq


title: RHH5118 scRNA-Seq


title: RHH5114 scRNA-Seq


title: RHH5117 scRNA-Seq


title: RHH5135 scRNA-Seq


title: RHH5112 scRNA-Seq


title: RHH5111 scRNA-Seq


title: RHH5110 scRNA-Seq


title: RHH5116 scRNA-Seq


title: RHH5107 scRNA-Seq


title: RHH5106 scRNA-Seq


title: RHH5105 scRNA-Seq


title: RHH5108 scRNA-Seq


title: RHH5109 scRNA-Seq


title: RHH5103 scRNA-Seq


title: RHH5101 scRNA-Seq


title: RHH5102 scRNA-Seq


title: RHH5099 scRNA-Seq


title: RHH5122 scRNA-Seq


title: RHH5100 scRNA-Seq


title: RHH5104 scRNA-Seq


title: RHH5095 scRNA-Seq


title: RHH5097 scRNA-Seq


title: RHH5096 scRNA-Seq


title: RHH5098 scRNA-Seq


title: RHH5113 scRNA-Seq


title: RHH5091 scRNA-Seq


title: RHH5093 scRNA-Seq


title: RHH5086 scRNA-Seq


title: RHH5092 scRNA-Seq


title: RHH5088 scRNA-Seq


title: RHH5087 scRNA-Seq


title: RHH5090 scRNA-Seq


title: RHH5083 scRNA-Seq


title: RHH5084 scRNA-Seq


title: RHH5085 scRNA-Seq


title: RHH5080 scRNA-Seq


title: RHH5081 scRNA-Seq


title: RHH5082 scRNA-Seq


title: RHH5079 scRNA-Seq


title: RHH5078 scRNA-Seq


title: RHH5076 scRNA-Seq


title: RHH5077 scRNA-Seq


title: RHH5094 scRNA-Seq


title: RHH5073 scRNA-Seq


title: RHH5074 scRNA-Seq


title: RHH5071 scRNA-Seq


title: RHH5072 scRNA-Seq


title: RHH5065 scRNA-Seq


title: RHH5066 scRNA-Seq


title: RHH5068 scRNA-Seq


title: RHH5069 scRNA-Seq


title: RHH5067 scRNA-Seq


title: RHH5089 scRNA-Seq


title: RHH5062 scRNA-Seq


title: RHH5064 scRNA-Seq


title: RHH5059 scRNA-Seq


title: RHH5061 scRNA-Seq


title: RHH5060 scRNA-Seq


title: RHH5075 scRNA-Seq


title: RHH5058 scRNA-Seq


title: RHH5055 scRNA-Seq

source_name: Human Healthy Liver

value: Human Healthy Liver


title: RHH5056 scRNA-Seq


title: RHH5057 scRNA-Seq


title: RHH5070 scRNA-Seq


title: RHH5054 scRNA-Seq


title: RHH5052 scRNA-Seq


title: RHH5053 scRNA-Seq


title: RHH5051 scRNA-Seq


title: RHH5050 scRNA-Seq


title: RHH5048 scRNA-Seq


title: RHH5049 scRNA-Seq


title: RHH5046 scRNA-Seq


title: RHH5043 scRNA-Seq


title: RHH5045 scRNA-Seq


title: RHH5047 scRNA-Seq


title: RHH5042 scRNA-Seq


title: RHH5039 scRNA-Seq


title: RHH5063 scRNA-Seq


title: RHH5038 scRNA-Seq


title: RHH5035 scRNA-Seq


title: RHH5037 scRNA-Seq


title: RHH5041 scRNA-Seq


title: RHH5036 scRNA-Seq


title: RHH5033 scRNA-Seq


title: RHH5032 scRNA-Seq


title: RHH5034 scRNA-Seq


title: RHH5031 scRNA-Seq


title: RHH5030 scRNA-Seq


title: RHH5029 scRNA-Seq


title: RHH5028 scRNA-Seq


title: RHH5026 scRNA-Seq


title: RHH5044 scRNA-Seq


title: RHH5024 scRNA-Seq


title: RHH5027 scRNA-Seq


title: RHH5040 scRNA-Seq


title: RHH5023 scRNA-Seq


title: RHH5021 scRNA-Seq


title: RHH5020 scRNA-Seq


title: RHH5017 scRNA-Seq


title: RHH5022 scRNA-Seq


title: RHH5019 scRNA-Seq


title: RHH5013 scRNA-Seq


title: RHH5016 scRNA-Seq


title: RHH5012 scRNA-Seq


title: RHH5015 scRNA-Seq


title: RHH5010 scRNA-Seq


title: RHH5014 scRNA-Seq


title: RHH5009 scRNA-Seq


title: RHH5011 scRNA-Seq


title: RHH5008 scRNA-Seq


title: RHH5006 scRNA-Seq


title: RHH5007 scRNA-Seq


title: RHH5005 scRNA-Seq


title: RHH5003 scRNA-Seq


title: RHH5025 scRNA-Seq


title: RHH5001 scRNA-Seq


title: RHH5000 scRNA-Seq


title: RHH4999 scRNA-Seq


title: RHH4998 scRNA-Seq


title: RHH4997 scRNA-Seq


title: RHH5002 scRNA-Seq


title: RHH5018 scRNA-Seq


title: RHH4993 scRNA-Seq


title: RHH4994 scRNA-Seq


title: RHH4995 scRNA-Seq


title: RHH4986 scRNA-Seq


title: RHH4996 scRNA-Seq


title: RHH4989 scRNA-Seq


title: RHH4991 scRNA-Seq


title: RHH4992 scRNA-Seq


title: RHH4983 scRNA-Seq


title: RHH4985 scRNA-Seq


title: RHH4984 scRNA-Seq


title: RHH5004 scRNA-Seq


title: RHH4980 scRNA-Seq


title: RHH4981 scRNA-Seq


title: RHH4977 scRNA-Seq


title: RHH4982 scRNA-Seq


title: RHH4978 scRNA-Seq


title: RHH4975 scRNA-Seq


title: RHH4974 scRNA-Seq


title: RHH4971 scRNA-Seq


title: RHH4969 scRNA-Seq


title: RHH4972 scRNA-Seq


title: RHH4968 scRNA-Seq


title: RHH4973 scRNA-Seq


title: RHH4988 scRNA-Seq


title: RHH4987 scRNA-Seq


title: RHH4891 scRNA-Seq


title: RHH4890 scRNA-Seq


title: RHH4990 scRNA-Seq


title: RHH4885 scRNA-Seq


title: RHH4888 scRNA-Seq


title: RHH4889 scRNA-Seq


title: RHH4881 scRNA-Seq


title: RHH4887 scRNA-Seq


title: RHH4976 scRNA-Seq


title: RHH4883 scRNA-Seq


title: RHH4880 scRNA-Seq


title: RHH4878 scRNA-Seq


title: RHH4882 scRNA-Seq


title: RHH4879 scRNA-Seq


title: RHH4876 scRNA-Seq


title: RHH4970 scRNA-Seq


title: RHH4875 scRNA-Seq


title: RHH4874 scRNA-Seq


title: RHH4873 scRNA-Seq


title: RHH4872 scRNA-Seq


title: RHH4871 scRNA-Seq


title: RHH4884 scRNA-Seq


title: RHH4869 scRNA-Seq


title: RHH4868 scRNA-Seq


title: RHH4979 scRNA-Seq


title: RHH4865 scRNA-Seq


title: RHH4863 scRNA-Seq


title: RHH4866 scRNA-Seq


title: RHH4867 scRNA-Seq


title: RHH4864 scRNA-Seq


title: RHH4886 scRNA-Seq


title: RHH4877 scRNA-Seq


title: RHH4861 scRNA-Seq


title: RHH4856 scRNA-Seq


title: RHH4860 scRNA-Seq


title: RHH4859 scRNA-Seq


title: RHH4857 scRNA-Seq


title: RHH4858 scRNA-Seq


title: RHH4853 scRNA-Seq


title: RHH4862 scRNA-Seq


title: RHH4855 scRNA-Seq


title: RHH4851 scRNA-Seq


title: RHH4852 scRNA-Seq


title: RHH4850 scRNA-Seq


title: RHH4849 scRNA-Seq


title: RHH4847 scRNA-Seq


title: RHH4848 scRNA-Seq


title: RHH4846 scRNA-Seq


title: RHH4854 scRNA-Seq


title: RHH4845 scRNA-Seq


title: RHH4870 scRNA-Seq


title: RHH4842 scRNA-Seq


title: RHH4843 scRNA-Seq


title: RHH4840 scRNA-Seq


title: RHH4844 scRNA-Seq


title: RHH4841 scRNA-Seq


title: RHH4838 scRNA-Seq


title: RHH4837 scRNA-Seq


title: RHH4839 scRNA-Seq


title: RHH4836 scRNA-Seq


title: RHH4835 scRNA-Seq


title: RHH4830 scRNA-Seq


title: RHH4831 scRNA-Seq


title: RHH4829 scRNA-Seq


title: RHH4833 scRNA-Seq


title: RHH4826 scRNA-Seq


title: RHH4828 scRNA-Seq


title: RHH4834 scRNA-Seq


title: RHH4824 scRNA-Seq


title: RHH4832 scRNA-Seq


title: RHH4822 scRNA-Seq


title: RHH4825 scRNA-Seq


title: RHH4821 scRNA-Seq


title: RHH4819 scRNA-Seq


title: RHH4818 scRNA-Seq


title: RHH4817 scRNA-Seq


title: RHH4809 scRNA-Seq


title: RHH4813 scRNA-Seq


title: RHH4814 scRNA-Seq


title: RHH4815 scRNA-Seq


title: RHH4811 scRNA-Seq


title: RHH4810 scRNA-Seq


title: RHH4808 scRNA-Seq


title: RHH4827 scRNA-Seq


title: RHH4805 scRNA-Seq


title: RHH4803 scRNA-Seq


title: RHH4823 scRNA-Seq


title: RHH4801 scRNA-Seq


title: RHH4804 scRNA-Seq


title: RHH4799 scRNA-Seq


title: RHH4800 scRNA-Seq


title: RHH4798 scRNA-Seq


title: RHH4802 scRNA-Seq


title: RHH4820 scRNA-Seq


title: RHH4796 scRNA-Seq


title: RHH4797 scRNA-Seq


title: RHH4795 scRNA-Seq


title: RHH4793 scRNA-Seq


title: RHH4794 scRNA-Seq


title: RHH4792 scRNA-Seq


title: RHH4806 scRNA-Seq


title: RHH4791 scRNA-Seq


title: RHH4786 scRNA-Seq


title: RHH4788 scRNA-Seq


title: RHH4790 scRNA-Seq


title: RHH4812 scRNA-Seq


title: RHH4784 scRNA-Seq


title: RHH4783 scRNA-Seq


title: RHH4785 scRNA-Seq


title: RHH4789 scRNA-Seq


title: RHH4781 scRNA-Seq


title: RHH4816 scRNA-Seq


title: RHH4779 scRNA-Seq


title: RHH4778 scRNA-Seq


title: RHH4782 scRNA-Seq


title: RHH4776 scRNA-Seq


title: RHH4780 scRNA-Seq


title: RHH4775 scRNA-Seq


title: RHH4772 scRNA-Seq


title: RHH4768 scRNA-Seq


title: RHH4773 scRNA-Seq


title: RHH4770 scRNA-Seq


title: RHH4771 scRNA-Seq


title: RHH4774 scRNA-Seq


title: RHH4769 scRNA-Seq


title: RHH4767 scRNA-Seq


title: RHH4766 scRNA-Seq


title: RHH4787 scRNA-Seq


title: RHH4765 scRNA-Seq


title: RHH4764 scRNA-Seq


title: RHH4763 scRNA-Seq


title: RHH4761 scRNA-Seq


title: RHH4759 scRNA-Seq


title: RHH4756 scRNA-Seq


title: RHH4760 scRNA-Seq


title: RHH4762 scRNA-Seq


title: RHH4777 scRNA-Seq


title: RHH4757 scRNA-Seq


title: RHH4758 scRNA-Seq


title: RHH4753 scRNA-Seq


title: RHH4807 scRNA-Seq


title: RHH4752 scRNA-Seq


title: RHH4755 scRNA-Seq


title: RHH4751 scRNA-Seq


title: RHH4748 scRNA-Seq


title: RHH4749 scRNA-Seq


title: RHH4747 scRNA-Seq


title: RHH4744 scRNA-Seq


title: RHH4740 scRNA-Seq


title: RHH4742 scRNA-Seq


title: RHH4741 scRNA-Seq


title: RHH4743 scRNA-Seq


title: RHH4745 scRNA-Seq


title: RHH4738 scRNA-Seq


title: RHH4739 scRNA-Seq


title: RHH4735 scRNA-Seq


title: RHH4737 scRNA-Seq


title: RHH4736 scRNA-Seq


title: RHH4734 scRNA-Seq


title: RHH4754 scRNA-Seq


title: RHH4733 scRNA-Seq


title: RHH4729 scRNA-Seq


title: RHH4728 scRNA-Seq


title: RHH4731 scRNA-Seq


title: RHH4730 scRNA-Seq


title: RHH4726 scRNA-Seq


title: RHH4750 scRNA-Seq


title: RHH4732 scRNA-Seq


title: RHH4725 scRNA-Seq


title: RHH4727 scRNA-Seq


title: RHH4724 scRNA-Seq


title: RHH4722 scRNA-Seq


title: RHH4723 scRNA-Seq


title: RHH4720 scRNA-Seq


title: RHH4746 scRNA-Seq


title: RHH4717 scRNA-Seq


title: RHH4715 scRNA-Seq


title: RHH4719 scRNA-Seq


title: RHH4712 scRNA-Seq


title: RHH4718 scRNA-Seq


title: RHH4716 scRNA-Seq


title: RHH4713 scRNA-Seq


title: RHH4708 scRNA-Seq


title: RHH4711 scRNA-Seq


title: RHH4709 scRNA-Seq


title: RHH4707 scRNA-Seq


title: RHH4706 scRNA-Seq


title: RHH4710 scRNA-Seq


title: RHH4704 scRNA-Seq


title: RHH4701 scRNA-Seq


title: RHH4705 scRNA-Seq


title: RHH4702 scRNA-Seq


title: RHH4703 scRNA-Seq


title: RHH4721 scRNA-Seq


title: RHH4695 scRNA-Seq


title: RHH4696 scRNA-Seq


title: RHH4699 scRNA-Seq


title: RHH4700 scRNA-Seq


title: RHH4697 scRNA-Seq


title: RHH4691 scRNA-Seq


title: RHH4694 scRNA-Seq


title: RHH4689 scRNA-Seq


title: RHH4692 scRNA-Seq


title: RHH4690 scRNA-Seq


title: RHH4693 scRNA-Seq


title: RHH4698 scRNA-Seq


title: RHH4685 scRNA-Seq


title: RHH4688 scRNA-Seq


title: RHH4687 scRNA-Seq


title: RHH4684 scRNA-Seq


title: RHH4714 scRNA-Seq


title: RHH4683 scRNA-Seq


title: HEKs, RPRD1A_FL

city: BIRMINGHAM

first: Hurmuz

last: CEYLAN

address: School of Biosciences, University of Birmingham,, Edgbaston B15 2TT

country: United Kingdom

institute: University of Birmingham

data_processing:
Library strategy: 4sU-seq
Quality control was performed on fastq files using fastqc. Raw files were aligned to a combined Homo Sapiens and Saccharomyces cerevisiae genome using STAR. Feature counts were obtained using htseq-count, parameters –order=pos –stranded=no type = gene. Bam files were normalized to the Saccharomyces cerevisiae spike-in and converted into bigwigs. Metagenes were then generated using deepTools.
Genome_build: GRCh38
Supplementary_files_format_and_content: bigwig

organism:
Saccharomyces cerevisiae
Homo sapiens

source_name: Human Embryonic Kidney

growth_protocol: Cells were grown in DMEM medium  supplemented with 10% heat-inactivated FBS  and 1% Penicillin/Streptomycin at 37°C under 5% CO2

extract_protocol:
The total RNA extractions were performed with TRIzol  according to the manufacturers’ instructions. 4-thiouracil-labelled S.Cerevisiae RNA was used as spike-in. biotinylation was done for 4Su/4TU labeled residues of RNAs. Then biotylated RNAs were eluted  with Dynabeads™ M-270 Streptavidin
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: Cells were transfected siRNAs or inducedwith tetracycline for 48 hours . 4-thiouridine was added into the cell medium as 100 μM final concentration and incubated 5 minutes before the RNA extraction

value: Human Embryonic Kidney

tag: genotype

value: Tetracyline induced


title: HEKs, RPRD2_FL


title: RHH4686 scRNA-Seq


title: RHH4682 scRNA-Seq


title: HEKs, RPRF1B_FL


title: HEKs, GFP_FL


title: HEKs, RPRD2_KD

value: siRNA Transfected


title: RHH4680 scRNA-Seq


title: RHH4679 scRNA-Seq


title: HEKs, RPRD1A_KD


title: RHH4681 scRNA-Seq


title: RHH4677 scRNA-Seq


title: HEKs, CTRL

value: CTRL


title: HEKs, RPRD1B_KD


title: RHH4676 scRNA-Seq


title: RHH4674 scRNA-Seq