title: 1-20RMt4-pDC-RM_S94


title: 13-38RQn5-pDC-RM_S106

status: Public on Jun 15 2021

type: SRA

city: Atlanta

first: Steven

middle: E.

last: Bosinger

address: 954 Gatewood Rd NE

country: USA

institute: Emory University

description: RawCounts_SIVpos_SIVneg_MacaM_Caty_Common.txt,RawCounts_mDC_MacaM.txt

library_source: transcriptomic

data_processing:
Illumina bcl2fastq v2.17.1.14 was used for demultiplexing.
Reads were mapped using STAR v2.5.2b with default alignment parameters.
For SIV+ vs SIV- pDC samples (Figures 1 & 2), alignment was done to either MacaM v7 (rhesus macaque samples) or Caty 1.0 (sooty mangabey samples). Only gene names that were common between the two were used
For ranking genes expressed on surface and transcription factors, samples were aligned to MacaM v7 and GRCh38
For all other analyses, samples were aligned to MacaM v7
Abundance estimation of raw read counts per transcript was done internally with STAR using the algorithm of htseq-count.
Genome_build: Rhesus macaque (MacaM v7.8.2 - https://www.unmc.edu/rhesusgenechip/index.htm#Rhesus), sooty mangabey (Caty 1.0 - NCBI GCF_000955945.1), human(GRCh38 ensembl relase 86).
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

molecule: total RNA

organism: Macaca mulatta

source_name: PBMC

extract_protocol:
Total RNA was purified using the Qiagen miRNeasy Mini Kit
cDNA was generated using the Clontech SMARTseq v4 Ultra Low Input kit and libraries were prepared for sequencing using the Illumina HiSeq3000

tag: batch id

tag: subject id

tag: infected

value: SIVneg

tag: cell type

value: pDC


title: Mint-ChIP-seq from brain (ENCLB215HIQ)

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR534KYA/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR534KYA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB215HIQ
fragmentation methods: none

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens female embryo (5 days) brain organoid, 90 days post differentiation

tag: antibody

value: brain

value: organoid

tag: biosample encode accession

tag: Sex

value: female

tag: health state

value: healthy

tag: dev stage

value: embryonic

tag: age

value: 5 day

tag: lab

value: Bradley Bernstein, Broad

tag: source

value: Paola Arlotta

tag: link

value: ENCBS277HZS at ENCODE; https://www.encodeproject.org/ENCBS277HZS/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: 15-41112-11-pDC-RM_S108

value: SIVpos


title: 5-1RVp4-pDC-RM_S98


title: Mint-ChIP-seq from IgD-negative memory B cell (ENCLB422QNL)

description:
https://www.encodeproject.org/experiments/ENCSR346UYQ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human IgD-negative memory B cell
experiment encode accession: ENCSR346UYQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR469VTN
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB422QNL
fragmentation methods: none

source_name: Homo sapiens IgD-negative memory B primary cell, preserved by cryopreservation

value: IgD-negative memory B cell

value: primary cell

tag: description

value: B memory CD3- CD14- CD19+ CD27+ IgD-

value: not collected

value: unknown

value: David Hafler

value: ENCBS677QPD at ENCODE; https://www.encodeproject.org/ENCBS677QPD/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: Control Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB352BOI)

description:
https://www.encodeproject.org/experiments/ENCSR344TLH/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR344TLH
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB352BOI

source_name: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T primary cell with multiple sclerosis, preserved by cryopreservation

value: CD4+ naive CD3+ CD4+ CD8- CD45RA+ CD45RO- nonTreg

value: multiple sclerosis

value: ENCBS321BAK at ENCODE; https://www.encodeproject.org/ENCBS321BAK/

value: Derived from ENCODE donor ENCDO157PKH; https://www.encodeproject.org/ENCDO157PKH/


title: Control Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB066RCH)

description:
https://www.encodeproject.org/experiments/ENCSR344TLH/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR344TLH
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB066RCH

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from IgD-negative memory B cell (ENCLB760DET)

description:
https://www.encodeproject.org/experiments/ENCSR346UYQ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human IgD-negative memory B cell
experiment encode accession: ENCSR346UYQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR469VTN
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB760DET
fragmentation methods: none

value: healthy


title: 11-3479-11-pDC-RM_S104

value: pDC


title: 9-2697-11-pDC-RM_S102


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB405CGA)

description:
https://www.encodeproject.org/experiments/ENCSR532PXR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR532PXR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR899DXS
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB405CGA
fragmentation methods: none
instrument models: Illumina HiSeq 2500,Illumina NovaSeq 6000

value: ENCBS067WEN at ENCODE; https://www.encodeproject.org/ENCBS067WEN/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: Mint-ChIP-seq from H9 (ENCLB814HPZ)

description:
https://www.encodeproject.org/experiments/ENCSR341WEF/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR341WEF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB814HPZ
fragmentation methods: none

source_name: Homo sapiens H9 cell line

tag: line

value: cell line

value: female

value: embryonic

value: 5 day

value: Kevin Eggan and Ralda Nehme

value: ENCBS062ZAE at ENCODE; https://www.encodeproject.org/ENCBS062ZAE/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from H9 (ENCLB041XPC)

description:
https://www.encodeproject.org/experiments/ENCSR341WEF/
***************
biological replicate number: 3
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR341WEF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB041XPC
fragmentation methods: none

value: ENCBS561LGY at ENCODE; https://www.encodeproject.org/ENCBS561LGY/


title: Mint-ChIP-seq from H9 (ENCLB542PZX)

description:
https://www.encodeproject.org/experiments/ENCSR341WEF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR341WEF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB542PZX
fragmentation methods: none

value: ENCBS161LPX at ENCODE; https://www.encodeproject.org/ENCBS161LPX/


title: mybB_r2_hr16

city: Houston

first: Gad

last: Shaulsky

state: TX

address: One Baylor Plaza

department: Molecular and Human Genetics

institute: Baylor College of Medicine

data_processing:
After demultiplexing and filtering illumina adapter sequences, the data was mapped to the D. discoideum genome with bowtie version 1.0.0. Read qualities were used. Other parameters: seed length = 28, allowed mismatches = 2, allowed up to 1 alignment per read, with bowtie options -a, --strata, --best. Unmapped reads were trimmed from 3' by 2 nucleotides, which was repeated 5 times.
Raw expression values were computed as the number of reads that were uniquely mapped to gene exons.
Normalized expression were scaled with mappable exon lengths. This normalization is similar to the RPKM normalization (Reads Per Kilobase of exon per Megabase of library size), but instead of dividing by exon lengths we used the uniquely mappable parts of the exon. To obtain uniquely mappable parts, all possible subsequences of the reference genome (of the same length as reads in raw data) are mapped back to the reference genome, obtaining the number of uniquely mapped sequences to the exons (Exon_mappable). As a library size we used the total number of all uniquely mapped reads from the experiment, excluding the non-polyadenylated genes (N_unique). Normalized expressions were computed as follows: Exp = 10^9*raw/(N_unique * Exon_mappable).
Genome_build: D. discoideum Chromosomal DNA: 1,2,3,4,5,6,M, and floating contigs (created: 05-13-2009 13:53) from the DictyBase (chromosomes 1,2,3,4,5,6 and mitochondrial DNA are the same as on NCBI assembly "dicty_2.7"). Regions [3016085, 3768655] from chr2, [64985, 72996] from chrBF and [42801, 78150] from chrR were masked.
Supplementary_files_format_and_content: Processed data files are tab-separated files with two columns: the first containing gene names and the second its expression. Files ending with "_rc.tab" contain raw expression values while files ending with "_nor.tab" contain normalized expression values.

organism: Dictyostelium discoideum

growth_protocol: Twenty strains were cultured axenically in HL5.

extract_protocol:
At each time point, we harvested the cells directly into 1 mL of Trizol® (life technologies, CA, USA) and extracted total RNA according to the manufacturer’s recommended protocol. We performed two rounds of poly-A selection and fragmented 100 ng of the resulting mRNA into approximately 200 bases fragments. We prepared cDNA and the second strand.
We prepared Illumina multiplexed libraries of all samples. 434 individual libraries were separately prepared and divided to 22 sets. We added a unique barcode to each library in each set at the final step of PCR amplification. We pooled equal amounts of DNA from each library and sequenced those pools by Illumina HiSeq2500 (single-end sequencing, read length = 50 or 100 bases) or (paired-end sequencing, read length = 93 or 100 bases) or by NovaSeq6000 (paired-end sequencing, read length = 150 bases).

treatment_protocol: Cells were washed with PDF and plated on nitrocellulse filter on filter paper saturated in PDF at 1.8x106 cells/cm2.

tag: strain

value: mybB

tag: phenotype group

value: aggregation minus

tag: replicate

tag: developmental time


title: mybB_r2_hr06


title: mybB_r2_hr12


title: mybB_r2_hr20


title: mybB_r2_hr24


title: Mint-ChIP-seq from H9 (ENCLB109TFJ)

description:
https://www.encodeproject.org/experiments/ENCSR341WEF/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR341WEF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB109TFJ
fragmentation methods: none


title: mybB_r2_hr04


title: Mint-ChIP-seq from H9 (ENCLB794TRN)

description:
https://www.encodeproject.org/experiments/ENCSR341WEF/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR341WEF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB794TRN
fragmentation methods: none


title: mybB_r2_hr08


title: mybB_r2_hr02


title: mybB_r2_hr01


title: Control Mint-ChIP-seq from nephron progenitor cell (ENCLB614VLP)

description:
https://www.encodeproject.org/experiments/ENCSR425YBK/
***************
biological replicate number: 1
technical replicate number: 4
description: Control Mint-ChIP-seq on human H9 derived nephron progenitor cell
experiment encode accession: ENCSR425YBK
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB614VLP

source_name: Homo sapiens female embryo (5 days) nephron progenitor in vitro differentiated cells

value: nephron progenitor cell

value: in vitro differentiated cells

value: H9 NPC (Day 8):Nephron progenitor cells derived from H9 ES cells

value: Joseph Bonventre

value: ENCBS835ZTQ at ENCODE; https://www.encodeproject.org/ENCBS835ZTQ/


title: Control Mint-ChIP-seq from nephron progenitor cell (ENCLB750HGF)

description:
https://www.encodeproject.org/experiments/ENCSR425YBK/
***************
biological replicate number: 2
technical replicate number: 4
description: Control Mint-ChIP-seq on human H9 derived nephron progenitor cell
experiment encode accession: ENCSR425YBK
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB750HGF

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS491YOI at ENCODE; https://www.encodeproject.org/ENCBS491YOI/


title: mybB_r2_hr03


title: 7-29102-11-pDC-RM_S100

tag: batch id

tag: subject id

tag: infected

value: SIVpos

value: pDC


title: mybB_r2_hr00


title: mybB_r1_hr20


title: mybB_r1_hr24


title: Control Mint-ChIP-seq from nephron progenitor cell (ENCLB606OJZ)

description:
https://www.encodeproject.org/experiments/ENCSR425YBK/
***************
biological replicate number: 2
technical replicate number: 3
description: Control Mint-ChIP-seq on human H9 derived nephron progenitor cell
experiment encode accession: ENCSR425YBK
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB606OJZ

tag: biosample encode accession

value: female

value: embryonic

value: 5 day


title: mybB_r1_hr16


title: Control Mint-ChIP-seq from nephron progenitor cell (ENCLB180AEV)

description:
https://www.encodeproject.org/experiments/ENCSR425YBK/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human H9 derived nephron progenitor cell
experiment encode accession: ENCSR425YBK
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB180AEV

tag: Sex

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from H9 (ENCLB887UGD)

description:
https://www.encodeproject.org/experiments/ENCSR341WEF/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR341WEF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB887UGD
fragmentation methods: none

tag: antibody

value: cell line

tag: health state

value: Kevin Eggan and Ralda Nehme

value: ENCBS062ZAE at ENCODE; https://www.encodeproject.org/ENCBS062ZAE/


title: mybB_r2_hr05

value: mybB

value: aggregation minus


title: Mint-ChIP-seq from nephron progenitor cell (ENCLB295IWG)

description:
https://www.encodeproject.org/experiments/ENCSR450CSM/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human H9 derived nephron progenitor cell
experiment encode accession: ENCSR450CSM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR425YBK
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB295IWG
fragmentation methods: none

value: nephron progenitor cell

value: in vitro differentiated cells

value: H9 NPC (Day 8):Nephron progenitor cells derived from H9 ES cells

tag: dev stage

tag: age


title: Control Mint-ChIP-seq from nephron progenitor cell (ENCLB728GYF)

description:
https://www.encodeproject.org/experiments/ENCSR425YBK/
***************
biological replicate number: 2
technical replicate number: 2
description: Control Mint-ChIP-seq on human H9 derived nephron progenitor cell
experiment encode accession: ENCSR425YBK
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB728GYF

value: healthy

tag: lab

tag: source

value: Joseph Bonventre


title: Mint-ChIP-seq from immature natural killer cell (ENCLB238AJN)

description:
https://www.encodeproject.org/experiments/ENCSR420YAN/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR420YAN
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR242ARJ
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB238AJN
fragmentation methods: none

source_name: Homo sapiens immature natural killer primary cell

value: immature natural killer cell

value: primary cell

tag: description

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

tag: link

value: ENCBS142IVK at ENCODE; https://www.encodeproject.org/ENCBS142IVK/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: mybB_r1_hr03

tag: strain


title: mybB_r1_hr01

tag: phenotype group


title: Control Mint-ChIP-seq from nephron progenitor cell (ENCLB481QZH)

description:
https://www.encodeproject.org/experiments/ENCSR425YBK/
***************
biological replicate number: 1
technical replicate number: 3
description: Control Mint-ChIP-seq on human H9 derived nephron progenitor cell
experiment encode accession: ENCSR425YBK
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB481QZH

value: female

value: embryonic

value: 5 day

value: ENCBS835ZTQ at ENCODE; https://www.encodeproject.org/ENCBS835ZTQ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: mybB_r1_hr04

value: mybB

value: aggregation minus

tag: replicate


title: mybB_r1_hr00

tag: developmental time


title: Control Mint-ChIP-seq from nephron progenitor cell (ENCLB274TMG)

description:
https://www.encodeproject.org/experiments/ENCSR425YBK/
***************
biological replicate number: 2
technical replicate number: 1
description: Control Mint-ChIP-seq on human H9 derived nephron progenitor cell
experiment encode accession: ENCSR425YBK
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB274TMG

value: nephron progenitor cell

value: in vitro differentiated cells

value: H9 NPC (Day 8):Nephron progenitor cells derived from H9 ES cells

value: healthy

value: Joseph Bonventre

value: ENCBS491YOI at ENCODE; https://www.encodeproject.org/ENCBS491YOI/


title: Control Mint-ChIP-seq from nephron progenitor cell (ENCLB587XKY)

description:
https://www.encodeproject.org/experiments/ENCSR425YBK/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human H9 derived nephron progenitor cell
experiment encode accession: ENCSR425YBK
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB587XKY

value: Bradley Bernstein, Broad


title: acaA_r2_hr20

value: acaA


title: acaA_r2_hr12


title: Mint-ChIP-seq from H9 (ENCLB836ZAW)

description:
https://www.encodeproject.org/experiments/ENCSR419UJI/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR419UJI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB836ZAW
fragmentation methods: none

tag: line

value: cell line

value: Kevin Eggan and Ralda Nehme

value: ENCBS161LPX at ENCODE; https://www.encodeproject.org/ENCBS161LPX/


title: Mint-ChIP-seq from H9 (ENCLB833YUC)

description:
https://www.encodeproject.org/experiments/ENCSR419UJI/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR419UJI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB833YUC
fragmentation methods: none

value: female

value: embryonic


title: mybB_r1_hr08


title: mybB_r1_hr06


title: acaA_r2_hr06


title: mybB_r1_hr05


title: Mint-ChIP-seq from immature natural killer cell (ENCLB232QWJ)

description:
https://www.encodeproject.org/experiments/ENCSR420YAN/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR420YAN
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR242ARJ
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB232QWJ
fragmentation methods: none

value: immature natural killer cell

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: unknown

value: David Hafler

value: ENCBS142IVK at ENCODE; https://www.encodeproject.org/ENCBS142IVK/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: Mint-ChIP-seq from immature natural killer cell (ENCLB923AHJ)

description:
https://www.encodeproject.org/experiments/ENCSR530YDY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR530YDY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR204YIP
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB923AHJ
fragmentation methods: none

source_name: Homo sapiens immature natural killer primary cell with multiple sclerosis

value: multiple sclerosis

value: ENCBS745FCE at ENCODE; https://www.encodeproject.org/ENCBS745FCE/

value: Derived from ENCODE donor ENCDO553CCA; https://www.encodeproject.org/ENCDO553CCA/


title: Mint-ChIP-seq from H9 (ENCLB582YQW)

description:
https://www.encodeproject.org/experiments/ENCSR419UJI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR419UJI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB582YQW
fragmentation methods: none

value: healthy

value: 5 day

value: Bradley Bernstein, Broad

value: ENCBS062ZAE at ENCODE; https://www.encodeproject.org/ENCBS062ZAE/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: mybB_r1_hr02

value: mybB

value: aggregation minus


title: WGS from transverse colon (ENCLB898JVB)

description:
https://www.encodeproject.org/experiments/ENCSR420NDH/
***************
biological replicate number: 1
technical replicate number: 1
description: The data contained in this experiment correspond to Illumina-based whole genome shotgun sequencing of EN-TEX donor ENCDO271OUW, a 51 year old female. There are two libraries: PCR-based (9-cycle, ENCLB659IQW) and PCR-free (ENCLB898JVB), both sequenced on multiple lanes to a combined depth of ~ 60X in PE125 format.
experiment encode accession: ENCSR420NDH
assay title: WGS
assembly: GRCh38
encode release date: 2016-04-18
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB898JVB
fragmentation methods: see document

source_name: Homo sapiens transverse colon tissue female adult (51 year)

value: transverse colon

value: tissue

value: Transverse colon tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.

value: adult

value: female

value: 51 year

value: Thomas Gingeras, CSHL

value: ENCBS999VTF at ENCODE; https://www.encodeproject.org/ENCBS999VTF/

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: Mint-ChIP-seq from immature natural killer cell (ENCLB651FPM)

description:
https://www.encodeproject.org/experiments/ENCSR530YDY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR530YDY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR204YIP
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB651FPM
fragmentation methods: none

value: immature natural killer cell

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: multiple sclerosis

value: unknown

value: David Hafler

value: ENCBS745FCE at ENCODE; https://www.encodeproject.org/ENCBS745FCE/

value: Derived from ENCODE donor ENCDO553CCA; https://www.encodeproject.org/ENCDO553CCA/


title: mybB_r1_hr12

value: mybB

value: aggregation minus


title: Mint-ChIP-seq from H9 (ENCLB087ZVY)

description:
https://www.encodeproject.org/experiments/ENCSR419UJI/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR419UJI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB087ZVY
fragmentation methods: none

value: cell line

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein, Broad

value: Kevin Eggan and Ralda Nehme

value: ENCBS062ZAE at ENCODE; https://www.encodeproject.org/ENCBS062ZAE/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: acaA_r2_hr16

value: acaA


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB493VNU)

description:
https://www.encodeproject.org/experiments/ENCSR341QLC/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR341QLC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR127UUU
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB493VNU
fragmentation methods: none

source_name: Homo sapiens CD4-positive, alpha-beta memory T primary cell with multiple sclerosis

value: CD4-positive, alpha-beta memory T cell

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: ENCBS437FZY at ENCODE; https://www.encodeproject.org/ENCBS437FZY/


title: acaA_r2_hr05


title: acaA_r2_hr24


title: Mint-ChIP-seq from HFFc6 (ENCLB921FOR)

description:
https://www.encodeproject.org/experiments/ENCSR340XKM/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human HFFc6
experiment encode accession: ENCSR340XKM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR114FEG
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB921FOR
fragmentation methods: none

source_name: Homo sapiens HFFc6 cell line, preserved by cryopreservation

value: Clonal line 6 derived from hTert immortalized HFF parental line

value: male

value: normal

value: newborn

value: 0 year

value: Job Dekker, UMass

value: Job Dekker

tag: passage number

value: ENCBS217PYK at ENCODE; https://www.encodeproject.org/ENCBS217PYK/

value: Derived from ENCODE donor ENCDO737WWC; https://www.encodeproject.org/ENCDO737WWC/


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB833TME)

description:
https://www.encodeproject.org/experiments/ENCSR527GTR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR527GTR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR086KHK
encode release date: 2020-09-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB833TME
fragmentation methods: none

source_name: Homo sapiens CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: healthy

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS666ANY at ENCODE; https://www.encodeproject.org/ENCBS666ANY/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: Mint-ChIP-seq from H9 (ENCLB394GEU)

description:
https://www.encodeproject.org/experiments/ENCSR419UJI/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR419UJI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB394GEU
fragmentation methods: none

value: cell line

value: female

value: embryonic

value: 5 day

value: Kevin Eggan and Ralda Nehme

value: ENCBS561LGY at ENCODE; https://www.encodeproject.org/ENCBS561LGY/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: acaA_r2_hr00

value: acaA

value: aggregation minus


title: acaA_r2_hr04


title: Mint-ChIP-seq from H9 (ENCLB132UKM)

description:
https://www.encodeproject.org/experiments/ENCSR526UWU/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR526UWU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB132UKM
fragmentation methods: none


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB588DKR)

description:
https://www.encodeproject.org/experiments/ENCSR341QLC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR341QLC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR127UUU
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB588DKR
fragmentation methods: none

value: CD4-positive, alpha-beta memory T cell

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: multiple sclerosis

value: ENCBS437FZY at ENCODE; https://www.encodeproject.org/ENCBS437FZY/

value: Derived from ENCODE donor ENCDO553CCA; https://www.encodeproject.org/ENCDO553CCA/


title: acaA_r2_hr02


title: acaA_r2_hr03


title: acaA_r1_hr16


title: acaA_r1_hr24


title: Mint-ChIP-seq from HFFc6 (ENCLB770WMG)

description:
https://www.encodeproject.org/experiments/ENCSR340XKM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human HFFc6
experiment encode accession: ENCSR340XKM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR114FEG
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB770WMG
fragmentation methods: none

value: Clonal line 6 derived from hTert immortalized HFF parental line

value: male

value: normal

value: newborn

value: 0 year

value: Job Dekker, UMass

value: Job Dekker

value: ENCBS794NUP at ENCODE; https://www.encodeproject.org/ENCBS794NUP/

value: Derived from ENCODE donor ENCDO737WWC; https://www.encodeproject.org/ENCDO737WWC/


title: acaA_r1_hr20

value: acaA

value: aggregation minus


title: Mint-ChIP-seq from HFFc6 (ENCLB206DNQ)

description:
https://www.encodeproject.org/experiments/ENCSR340XKM/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human HFFc6
experiment encode accession: ENCSR340XKM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR114FEG
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB206DNQ
fragmentation methods: none

value: cell line

value: ENCBS217PYK at ENCODE; https://www.encodeproject.org/ENCBS217PYK/


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB872UFS)

description:
https://www.encodeproject.org/experiments/ENCSR527GTR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR527GTR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR086KHK
encode release date: 2020-09-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB872UFS
fragmentation methods: none

value: CD14-positive monocyte

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: healthy

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS666ANY at ENCODE; https://www.encodeproject.org/ENCBS666ANY/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: acaA_r1_hr12


title: acaA_r2_hr08


title: acaA_r1_hr03


title: acaA_r1_hr08


title: acaA_r1_hr01


title: Mint-ChIP-seq from H9 (ENCLB654YAZ)

description:
https://www.encodeproject.org/experiments/ENCSR526UWU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR526UWU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB654YAZ
fragmentation methods: none

value: female

value: embryonic

value: 5 day

value: Kevin Eggan and Ralda Nehme

value: ENCBS161LPX at ENCODE; https://www.encodeproject.org/ENCBS161LPX/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: acaA_r1_hr00

value: acaA

value: aggregation minus


title: acaA_r2_hr01


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB425ABO)

description:
https://www.encodeproject.org/experiments/ENCSR526TNC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR526TNC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR127UUU
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB425ABO
fragmentation methods: none

value: CD4-positive, alpha-beta memory T cell

value: primary cell

value: multiple sclerosis

value: ENCBS437FZY at ENCODE; https://www.encodeproject.org/ENCBS437FZY/

value: Derived from ENCODE donor ENCDO553CCA; https://www.encodeproject.org/ENCDO553CCA/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB218AWQ)

description:
https://www.encodeproject.org/experiments/ENCSR526TNC/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR526TNC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR127UUU
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB218AWQ
fragmentation methods: none

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: unknown

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from H9 (ENCLB694PFB)

description:
https://www.encodeproject.org/experiments/ENCSR526UWU/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR526UWU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB694PFB
fragmentation methods: none

value: cell line

value: female

value: healthy

value: ENCBS561LGY at ENCODE; https://www.encodeproject.org/ENCBS561LGY/


title: Mint-ChIP-seq from H9 (ENCLB731OUJ)

description:
https://www.encodeproject.org/experiments/ENCSR526UWU/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR526UWU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB731OUJ
fragmentation methods: none

value: embryonic

value: 5 day

value: Kevin Eggan and Ralda Nehme

value: ENCBS161LPX at ENCODE; https://www.encodeproject.org/ENCBS161LPX/


title: Mint-ChIP-seq from H9 (ENCLB833XON)

description:
https://www.encodeproject.org/experiments/ENCSR526UWU/
***************
biological replicate number: 3
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR526UWU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB833XON
fragmentation methods: none

value: ENCBS062ZAE at ENCODE; https://www.encodeproject.org/ENCBS062ZAE/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: acaA_r1_hr05

value: acaA

value: aggregation minus


title: Mint-ChIP-seq from HFFc6 (ENCLB865ZCB)

description:
https://www.encodeproject.org/experiments/ENCSR340XKM/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human HFFc6
experiment encode accession: ENCSR340XKM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR114FEG
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB865ZCB
fragmentation methods: none

value: Clonal line 6 derived from hTert immortalized HFF parental line

value: male

value: normal

value: newborn

value: 0 year

value: Job Dekker, UMass

value: Job Dekker

value: ENCBS794NUP at ENCODE; https://www.encodeproject.org/ENCBS794NUP/

value: Derived from ENCODE donor ENCDO737WWC; https://www.encodeproject.org/ENCDO737WWC/


title: acaA_r1_hr04


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB495QMC)

description:
https://www.encodeproject.org/experiments/ENCSR415LUY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR415LUY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR034OUM
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB495QMC
fragmentation methods: none

source_name: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T primary cell

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: healthy

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS928WKW at ENCODE; https://www.encodeproject.org/ENCBS928WKW/

value: Derived from ENCODE donor ENCDO258PRN; https://www.encodeproject.org/ENCDO258PRN/


title: gtaC_r3_hr08

value: gtaC

value: aggregation minus


title: gtaC_r3_hr05


title: gtaC_r4_hr05


title: acaA_r1_hr02

value: acaA


title: gtaC_r4_hr00


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB811IDS)

description:
https://www.encodeproject.org/experiments/ENCSR415LUY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR415LUY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR034OUM
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB811IDS
fragmentation methods: none


title: gtaC_r3_hr01


title: gtaC_r4_hr01


title: gtaC_r3_hr00


title: gtaC_r2_hr08


title: gtaC_r4_hr02


title: gtaC_r4_hr08


title: Mint-ChIP-seq from H9 (ENCLB401DPG)

description:
https://www.encodeproject.org/experiments/ENCSR419UJI/
***************
biological replicate number: 3
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR419UJI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB401DPG
fragmentation methods: none

value: cell line

value: female

value: embryonic

value: 5 day

value: Kevin Eggan and Ralda Nehme

value: ENCBS561LGY at ENCODE; https://www.encodeproject.org/ENCBS561LGY/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Control Mint-ChIP-seq from nephron (ENCLB517JXQ)

description:
https://www.encodeproject.org/experiments/ENCSR519LKT/
***************
biological replicate number: 2
technical replicate number: 4
description: Control Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR519LKT
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB517JXQ

source_name: Homo sapiens female embryo (5 days) nephron organoid, 35 days post differentiation

value: nephron

value: organoid

value: Joseph Bonventre

value: ENCBS391CFV at ENCODE; https://www.encodeproject.org/ENCBS391CFV/


title: Control Mint-ChIP-seq from nephron (ENCLB945EMK)

description:
https://www.encodeproject.org/experiments/ENCSR519LKT/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR519LKT
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB945EMK

source_name: Homo sapiens female embryo (5 days) nephron organoid

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS165DBC at ENCODE; https://www.encodeproject.org/ENCBS165DBC/


title: gtaC_r1_hr08

value: gtaC


title: gtaC_r1_hr05

value: aggregation minus


title: Control Mint-ChIP-seq from nephron (ENCLB753OAI)

description:
https://www.encodeproject.org/experiments/ENCSR519LKT/
***************
biological replicate number: 2
technical replicate number: 2
description: Control Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR519LKT
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB753OAI


title: Mint-ChIP-seq from HFFc6 (ENCLB429MDT)

description:
https://www.encodeproject.org/experiments/ENCSR519CMW/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human HFFc6
experiment encode accession: ENCSR519CMW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR114FEG
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB429MDT
fragmentation methods: none

value: Clonal line 6 derived from hTert immortalized HFF parental line

value: male

value: normal

value: newborn

value: 0 year

value: Job Dekker, UMass

value: Job Dekker

value: ENCBS794NUP at ENCODE; https://www.encodeproject.org/ENCBS794NUP/

value: Derived from ENCODE donor ENCDO737WWC; https://www.encodeproject.org/ENCDO737WWC/


title: Control Mint-ChIP-seq from nephron (ENCLB020NGB)

description:
https://www.encodeproject.org/experiments/ENCSR519LKT/
***************
biological replicate number: 2
technical replicate number: 3
description: Control Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR519LKT
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB020NGB

value: nephron

value: organoid

value: female

value: embryonic

value: 5 day

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: gtaC_r2_hr05

value: gtaC


title: gtaC_r2_hr02

value: aggregation minus


title: Control Mint-ChIP-seq from nephron (ENCLB292YMH)

description:
https://www.encodeproject.org/experiments/ENCSR519LKT/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR519LKT
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB292YMH

value: healthy

value: Bradley Bernstein, Broad

value: Joseph Bonventre

value: ENCBS165DBC at ENCODE; https://www.encodeproject.org/ENCBS165DBC/


title: Control Mint-ChIP-seq from nephron (ENCLB209MHW)

description:
https://www.encodeproject.org/experiments/ENCSR519LKT/
***************
biological replicate number: 2
technical replicate number: 1
description: Control Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR519LKT
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB209MHW

value: ENCBS391CFV at ENCODE; https://www.encodeproject.org/ENCBS391CFV/


title: Mint-ChIP-seq from HFFc6 (ENCLB001AJO)

description:
https://www.encodeproject.org/experiments/ENCSR519CMW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human HFFc6
experiment encode accession: ENCSR519CMW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR114FEG
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB001AJO
fragmentation methods: none

value: cell line

value: Clonal line 6 derived from hTert immortalized HFF parental line

value: male

value: normal

value: newborn

value: 0 year

value: Job Dekker, UMass

value: ENCBS217PYK at ENCODE; https://www.encodeproject.org/ENCBS217PYK/


title: Mint-ChIP-seq from HFFc6 (ENCLB072VYJ)

description:
https://www.encodeproject.org/experiments/ENCSR519CMW/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human HFFc6
experiment encode accession: ENCSR519CMW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR114FEG
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB072VYJ
fragmentation methods: none

value: Job Dekker

value: Derived from ENCODE donor ENCDO737WWC; https://www.encodeproject.org/ENCDO737WWC/


title: gtaC_r3_hr02

value: gtaC


title: gtaC_r1_hr02

value: aggregation minus


title: gtaC_r1_hr01


title: Mint-ChIP-seq from HFFc6 (ENCLB086GVL)

description:
https://www.encodeproject.org/experiments/ENCSR519CMW/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human HFFc6
experiment encode accession: ENCSR519CMW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR114FEG
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB086GVL
fragmentation methods: none

value: ENCBS794NUP at ENCODE; https://www.encodeproject.org/ENCBS794NUP/


title: gtaC_r1_hr00


title: tagB_r2_hr16

value: tagB

value: tight aggregate arrest


title: tagB_r2_hr28


title: gtaC_r2_hr00


title: gtaC_r2_hr01


title: acaA_r1_hr06

value: acaA


title: Mint-ChIP-seq from nephron (ENCLB372AME)

description:
https://www.encodeproject.org/experiments/ENCSR519AVF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR519AVF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR801AJD
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB372AME
fragmentation methods: none

source_name: Homo sapiens female embryo (5 days) nephron organoid, 49 days post differentiation

value: nephron

value: organoid

value: female

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein, Broad

value: Joseph Bonventre

value: ENCBS546COW at ENCODE; https://www.encodeproject.org/ENCBS546COW/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from nephron (ENCLB507IUM)

description:
https://www.encodeproject.org/experiments/ENCSR519AVF/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR519AVF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR801AJD
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB507IUM
fragmentation methods: none

value: ENCBS047TRT at ENCODE; https://www.encodeproject.org/ENCBS047TRT/


title: tagB_r2_hr08


title: tagB_r2_hr12


title: tagB_r2_hr24


title: Mint-ChIP-seq from nephron (ENCLB312DXB)

description:
https://www.encodeproject.org/experiments/ENCSR519AVF/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR519AVF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR801AJD
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB312DXB
fragmentation methods: none


title: Mint-ChIP-seq from nephron (ENCLB053NBD)

description:
https://www.encodeproject.org/experiments/ENCSR519AVF/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR519AVF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR801AJD
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB053NBD
fragmentation methods: none


title: tagB_r2_hr00


title: tagB_r2_hr06


title: tagB_r2_hr02


title: tagB_r2_hr20


title: tagB_r2_hr04


title: tagB_r1_hr28


title: tagB_r1_hr24


title: tagB_r1_hr12


title: Mint-ChIP-seq from brain (ENCLB438RIR)

description:
https://www.encodeproject.org/experiments/ENCSR408CSV/
***************
biological replicate number: 3
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR408CSV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR824UQL
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB438RIR
fragmentation methods: none

source_name: Homo sapiens female embryo (5 days) brain organoid, 30 days post differentiation

value: brain

value: Paola Arlotta

value: ENCBS001KQF at ENCODE; https://www.encodeproject.org/ENCBS001KQF/


title: Mint-ChIP-seq from brain (ENCLB045SBC)

description:
https://www.encodeproject.org/experiments/ENCSR408CSV/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR408CSV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR824UQL
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB045SBC
fragmentation methods: none

value: ENCBS219JHY at ENCODE; https://www.encodeproject.org/ENCBS219JHY/


title: Mint-ChIP-seq from brain (ENCLB567XNJ)

description:
https://www.encodeproject.org/experiments/ENCSR408CSV/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR408CSV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR824UQL
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB567XNJ
fragmentation methods: none

value: ENCBS337FMJ at ENCODE; https://www.encodeproject.org/ENCBS337FMJ/


title: tagB_r1_hr16

value: tagB

value: tight aggregate arrest


title: tagB_r1_hr08


title: tagB_r1_hr06


title: Mint-ChIP-seq from brain (ENCLB563IWI)

description:
https://www.encodeproject.org/experiments/ENCSR408CSV/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR408CSV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR824UQL
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB563IWI
fragmentation methods: none

value: organoid


title: Mint-ChIP-seq from brain (ENCLB367UZD)

description:
https://www.encodeproject.org/experiments/ENCSR408CSV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR408CSV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR824UQL
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB367UZD
fragmentation methods: none

value: female


title: tagB_r1_hr04


title: tagB_r1_hr20


title: tagB_r1_hr02


title: Mint-ChIP-seq from brain (ENCLB688DXL)

description:
https://www.encodeproject.org/experiments/ENCSR408CSV/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR408CSV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR824UQL
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB688DXL
fragmentation methods: none

value: healthy


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB446BWQ)

description:
https://www.encodeproject.org/experiments/ENCSR319HLH/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR319HLH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR086KHK
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB446BWQ

value: CD14-positive monocyte

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: unknown

value: David Hafler

value: ENCBS666ANY at ENCODE; https://www.encodeproject.org/ENCBS666ANY/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB793OTG)

description:
https://www.encodeproject.org/experiments/ENCSR319HLH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR319HLH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR086KHK
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB793OTG

value: Bradley Bernstein, Broad


title: tagB_r1_hr00


title: ecmARm_r2_hr28

value: ecmARm

value: culmination defective


title: ecmARm_r2_hr24


title: Control Mint-ChIP-seq from CD14-positive monocyte (ENCLB782ZET)

description:
https://www.encodeproject.org/experiments/ENCSR310WXY/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR310WXY
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB782ZET

value: ENCBS950WTC at ENCODE; https://www.encodeproject.org/ENCBS950WTC/

value: Derived from ENCODE donor ENCDO258PRN; https://www.encodeproject.org/ENCDO258PRN/


title: ecmARm_r2_hr20


title: Mint-ChIP-seq from HFFc6 (ENCLB520LBF)

description:
https://www.encodeproject.org/experiments/ENCSR510VXV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human HFFc6
experiment encode accession: ENCSR510VXV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR114FEG
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB520LBF
fragmentation methods: none

value: cell line

value: Clonal line 6 derived from hTert immortalized HFF parental line

value: male

value: normal

value: newborn

value: 0 year

value: Job Dekker, UMass

value: Job Dekker

value: ENCBS217PYK at ENCODE; https://www.encodeproject.org/ENCBS217PYK/

value: Derived from ENCODE donor ENCDO737WWC; https://www.encodeproject.org/ENCDO737WWC/


title: Mint-ChIP-seq from HFFc6 (ENCLB706AQB)

description:
https://www.encodeproject.org/experiments/ENCSR510VXV/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human HFFc6
experiment encode accession: ENCSR510VXV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR114FEG
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB706AQB
fragmentation methods: none

value: ENCBS794NUP at ENCODE; https://www.encodeproject.org/ENCBS794NUP/


title: ecmARm_r2_hr08


title: Mint-ChIP-seq from HFFc6 (ENCLB828TBG)

description:
https://www.encodeproject.org/experiments/ENCSR510VXV/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human HFFc6
experiment encode accession: ENCSR510VXV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR114FEG
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB828TBG
fragmentation methods: none


title: ecmARm_r2_hr16


title: ecmARm_r2_hr12


title: ecmARm_r2_hr06


title: Mint-ChIP-seq from naive B cell (ENCLB728PZO)

description:
https://www.encodeproject.org/experiments/ENCSR407XVO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human naive B cell
experiment encode accession: ENCSR407XVO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR906UGW
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB728PZO

source_name: Homo sapiens naive B primary cell

value: naive B cell

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: healthy

value: unknown

value: David Hafler

value: ENCBS973SPF at ENCODE; https://www.encodeproject.org/ENCBS973SPF/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: Mint-ChIP-seq from naive B cell (ENCLB202QDE)

description:
https://www.encodeproject.org/experiments/ENCSR407XVO/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human naive B cell
experiment encode accession: ENCSR407XVO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR906UGW
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB202QDE

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB474LDE)

description:
https://www.encodeproject.org/experiments/ENCSR305GJG/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR305GJG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR283QZJ
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB474LDE
fragmentation methods: none

value: ENCBS370LJB at ENCODE; https://www.encodeproject.org/ENCBS370LJB/


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB834SWA)

description:
https://www.encodeproject.org/experiments/ENCSR305GJG/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR305GJG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR283QZJ
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB834SWA
fragmentation methods: none


title: ecmARm_r2_hr02

value: ecmARm

value: culmination defective


title: ecmARm_r2_hr00


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB621XRW)

description:
https://www.encodeproject.org/experiments/ENCSR509NOR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR509NOR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR887UYJ
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB621XRW
fragmentation methods: none

source_name: Homo sapiens CD4-positive, alpha-beta memory T primary cell, preserved by cryopreservation

value: CD4-positive, alpha-beta memory T cell

value: CD4+ memory cells from healthy donor

value: ENCBS963BXF at ENCODE; https://www.encodeproject.org/ENCBS963BXF/

value: Derived from ENCODE donor ENCDO258PRN; https://www.encodeproject.org/ENCDO258PRN/


title: ecmARm_r1_hr24


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB776EFJ)

description:
https://www.encodeproject.org/experiments/ENCSR304DBE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human CD4-positive, CD25-positive, alpha-beta regulatory T cell
experiment encode accession: ENCSR304DBE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR242OUP
encode release date: 2020-09-15
lab: Bradley Bernstein, Broad
library encode accession: ENCLB776EFJ
fragmentation methods: none

source_name: Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T primary cell

value: ENCBS764TKE at ENCODE; https://www.encodeproject.org/ENCBS764TKE/


title: ecmARm_r1_hr12


title: ecmARm_r1_hr20


title: Mint-ChIP-seq from HFFc6 (ENCLB762CNF)

description:
https://www.encodeproject.org/experiments/ENCSR510VXV/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human HFFc6
experiment encode accession: ENCSR510VXV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR114FEG
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB762CNF
fragmentation methods: none

value: cell line

value: Clonal line 6 derived from hTert immortalized HFF parental line

value: male

value: normal

value: newborn

value: 0 year

value: Job Dekker, UMass

value: Job Dekker

value: ENCBS217PYK at ENCODE; https://www.encodeproject.org/ENCBS217PYK/

value: Derived from ENCODE donor ENCDO737WWC; https://www.encodeproject.org/ENCDO737WWC/


title: ecmARm_r2_hr04

value: ecmARm


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB175UFA)

description:
https://www.encodeproject.org/experiments/ENCSR304DBE/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human CD4-positive, CD25-positive, alpha-beta regulatory T cell
experiment encode accession: ENCSR304DBE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR242OUP
encode release date: 2020-09-15
lab: Bradley Bernstein, Broad
library encode accession: ENCLB175UFA
fragmentation methods: none

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: healthy

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: ecmARm_r1_hr16

value: culmination defective


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB254YRX)

description:
https://www.encodeproject.org/experiments/ENCSR509NOR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR509NOR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR887UYJ
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB254YRX
fragmentation methods: none

value: CD4-positive, alpha-beta memory T cell

value: CD4+ memory cells from healthy donor

value: ENCBS963BXF at ENCODE; https://www.encodeproject.org/ENCBS963BXF/

value: Derived from ENCODE donor ENCDO258PRN; https://www.encodeproject.org/ENCDO258PRN/


title: ecmARm_r1_hr08


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB352QVQ)

description:
https://www.encodeproject.org/experiments/ENCSR302RKX/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR302RKX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR749PSE
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB352QVQ
fragmentation methods: none

source_name: Homo sapiens CD8-positive, alpha-beta memory T primary cell

value: CD8-positive, alpha-beta memory T cell

value: ENCBS020LPJ at ENCODE; https://www.encodeproject.org/ENCBS020LPJ/


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB313NAL)

description:
https://www.encodeproject.org/experiments/ENCSR302RKX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR302RKX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR749PSE
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB313NAL
fragmentation methods: none


title: ecmARm_r1_hr04


title: ecmARm_r1_hr06


title: Mint-ChIP-seq from GM23338 (ENCLB514RAJ)

description:
https://www.encodeproject.org/experiments/ENCSR505OUT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human GM23338
experiment encode accession: ENCSR505OUT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR787HYA
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB514RAJ
fragmentation methods: none

source_name: Homo sapiens GM23338 cell line, preserved by cryopreservation

value: cell line

value: PGP1 iPSCs

value: male

value: adult

value: 53 year

value: George Church

value: ENCBS155WDP at ENCODE; https://www.encodeproject.org/ENCBS155WDP/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ecmARm_r1_hr28

value: ecmARm


title: ecmARm_r1_hr02


title: ecmARm_r1_hr00


title: Mint-ChIP-seq from GM23338 (ENCLB046WUT)

description:
https://www.encodeproject.org/experiments/ENCSR505OUT/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human GM23338
experiment encode accession: ENCSR505OUT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR787HYA
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB046WUT
fragmentation methods: none

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from brain (ENCLB512MBN)

description:
https://www.encodeproject.org/experiments/ENCSR300LXM/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR300LXM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB512MBN
fragmentation methods: none

source_name: Homo sapiens female embryo (5 days) brain organoid, 90 days post differentiation

value: brain

value: organoid

value: female

value: healthy

value: embryonic

value: 5 day

value: Paola Arlotta

value: ENCBS140WFQ at ENCODE; https://www.encodeproject.org/ENCBS140WFQ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from brain (ENCLB679DZE)

description:
https://www.encodeproject.org/experiments/ENCSR300LXM/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR300LXM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB679DZE
fragmentation methods: none

value: ENCBS069IXO at ENCODE; https://www.encodeproject.org/ENCBS069IXO/


title: Mint-ChIP-seq from brain (ENCLB595LXH)

description:
https://www.encodeproject.org/experiments/ENCSR300LXM/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR300LXM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB595LXH
fragmentation methods: none


title: Mint-ChIP-seq from brain (ENCLB103XDP)

description:
https://www.encodeproject.org/experiments/ENCSR300LXM/
***************
biological replicate number: 3
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR300LXM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB103XDP
fragmentation methods: none

value: ENCBS277HZS at ENCODE; https://www.encodeproject.org/ENCBS277HZS/


title: acaAPkaCoe_r2_hr28

value: acaA/PkaCoe

value: small fruiting body


title: acaAPkaCoe_r2_hr24


title: acaAPkaCoe_r2_hr20


title: acaAPkaCoe_r2_hr08


title: acaAPkaCoe_r2_hr12


title: acaAPkaCoe_r2_hr06


title: Mint-ChIP-seq from brain (ENCLB375YJN)

description:
https://www.encodeproject.org/experiments/ENCSR300LXM/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR300LXM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB375YJN
fragmentation methods: none


title: acaAPkaCoe_r2_hr05


title: acaAPkaCoe_r2_hr04


title: acaAPkaCoe_r2_hr03


title: acaAPkaCoe_r2_hr02


title: acaAPkaCoe_r2_hr00


title: Mint-ChIP-seq from brain (ENCLB466JSH)

description:
https://www.encodeproject.org/experiments/ENCSR098YKA/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR098YKA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB466JSH
fragmentation methods: none


title: Mint-ChIP-seq from brain (ENCLB750AKJ)

description:
https://www.encodeproject.org/experiments/ENCSR098YKA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR098YKA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB750AKJ
fragmentation methods: none


title: Mint-ChIP-seq from brain (ENCLB016XNM)

description:
https://www.encodeproject.org/experiments/ENCSR098YKA/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR098YKA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB016XNM
fragmentation methods: none


title: Mint-ChIP-seq from brain (ENCLB358SUX)

description:
https://www.encodeproject.org/experiments/ENCSR098YKA/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR098YKA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB358SUX
fragmentation methods: none


title: Mint-ChIP-seq from brain (ENCLB408PTO)

description:
https://www.encodeproject.org/experiments/ENCSR098YKA/
***************
biological replicate number: 3
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR098YKA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB408PTO
fragmentation methods: none


title: acaAPkaCoe_r2_hr01


title: acaAPkaCoe_r1_hr28


title: acaAPkaCoe_r2_hr16


title: acaAPkaCoe_r1_hr24


title: Mint-ChIP-seq from brain (ENCLB685JAR)

description:
https://www.encodeproject.org/experiments/ENCSR098YKA/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR098YKA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB685JAR
fragmentation methods: none


title: acaAPkaCoe_r1_hr12


title: Mint-ChIP-seq from brain (ENCLB040JGU)

description:
https://www.encodeproject.org/experiments/ENCSR300LXM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR300LXM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB040JGU
fragmentation methods: none


title: acaAPkaCoe_r1_hr20


title: Mint-ChIP-seq from H9 (ENCLB861TVS)

description:
https://www.encodeproject.org/experiments/ENCSR526UWU/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR526UWU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365EAV
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB861TVS
fragmentation methods: none

source_name: Homo sapiens H9 cell line

value: cell line

value: Kevin Eggan and Ralda Nehme

value: ENCBS062ZAE at ENCODE; https://www.encodeproject.org/ENCBS062ZAE/


title: Mint-ChIP-seq from brain (ENCLB739SPV)

description:
https://www.encodeproject.org/experiments/ENCSR293ESL/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR293ESL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB739SPV
fragmentation methods: none

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from brain (ENCLB107YYS)

description:
https://www.encodeproject.org/experiments/ENCSR293ESL/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR293ESL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB107YYS
fragmentation methods: none

value: brain


title: Mint-ChIP-seq from brain (ENCLB614OPF)

description:
https://www.encodeproject.org/experiments/ENCSR293ESL/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR293ESL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB614OPF
fragmentation methods: none

value: organoid


title: Mint-ChIP-seq from nephron (ENCLB800OVP)

description:
https://www.encodeproject.org/experiments/ENCSR283SJF/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR283SJF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR519LKT
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB800OVP
fragmentation methods: none

value: nephron

value: female

value: Joseph Bonventre

value: ENCBS165DBC at ENCODE; https://www.encodeproject.org/ENCBS165DBC/


title: Mint-ChIP-seq from brain (ENCLB352MXE)

description:
https://www.encodeproject.org/experiments/ENCSR293ESL/
***************
biological replicate number: 3
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR293ESL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB352MXE
fragmentation methods: none

value: healthy

value: embryonic

value: 5 day

value: Paola Arlotta


title: Mint-ChIP-seq from nephron (ENCLB487QPC)

description:
https://www.encodeproject.org/experiments/ENCSR283SJF/
***************
biological replicate number: 1
technical replicate number: 4
description: H3K27ac Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR283SJF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR519LKT
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB487QPC
fragmentation methods: none

value: ENCBS391CFV at ENCODE; https://www.encodeproject.org/ENCBS391CFV/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from brain (ENCLB131MNI)

description:
https://www.encodeproject.org/experiments/ENCSR293ESL/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR293ESL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB131MNI
fragmentation methods: none

value: ENCBS140WFQ at ENCODE; https://www.encodeproject.org/ENCBS140WFQ/


title: Mint-ChIP-seq from brain (ENCLB309SHD)

description:
https://www.encodeproject.org/experiments/ENCSR293ESL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR293ESL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB309SHD
fragmentation methods: none

value: ENCBS069IXO at ENCODE; https://www.encodeproject.org/ENCBS069IXO/


title: acaAPkaCoe_r1_hr16

value: acaA/PkaCoe

value: small fruiting body


title: acaAPkaCoe_r1_hr04


title: Mint-ChIP-seq from nephron (ENCLB431BZE)

description:
https://www.encodeproject.org/experiments/ENCSR283SJF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR283SJF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR519LKT
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB431BZE
fragmentation methods: none

value: Bradley Bernstein, Broad


title: acaAPkaCoe_r1_hr02


title: acaAPkaCoe_r1_hr05


title: acaAPkaCoe_r1_hr08


title: acaAPkaCoe_r1_hr01


title: acaAPkaCoe_r1_hr03


title: pkaR_r2_hr20

value: pkaR

value: precocious development


title: pkaR_r2_hr16


title: acaAPkaCoe_r1_hr06


title: acaAPkaCoe_r1_hr00


title: pkaR_r2_hr24


title: pkaR_r2_hr28


title: pkaR_r2_hr08


title: pkaR_r2_hr12


title: Mint-ChIP-seq from nephron (ENCLB532YGW)

description:
https://www.encodeproject.org/experiments/ENCSR283SJF/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR283SJF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR519LKT
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB532YGW
fragmentation methods: none

value: nephron

value: organoid


title: Mint-ChIP-seq from nephron (ENCLB846IUY)

description:
https://www.encodeproject.org/experiments/ENCSR283SJF/
***************
biological replicate number: 1
technical replicate number: 3
description: H3K27ac Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR283SJF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR519LKT
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB846IUY
fragmentation methods: none

value: female

value: Joseph Bonventre


title: pkaR_r2_hr06


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB682AFG)

description:
https://www.encodeproject.org/experiments/ENCSR284ZZR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR284ZZR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR958CUX
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB682AFG
fragmentation methods: none

source_name: Homo sapiens CD14-positive monocyte primary cell with multiple sclerosis, preserved by cryopreservation

value: CD14-positive monocyte

value: primary cell

value: Monocyte CD3- CD14+ CD19-

value: not collected

value: multiple sclerosis

value: unknown

value: David Hafler

value: ENCBS929PLQ at ENCODE; https://www.encodeproject.org/ENCBS929PLQ/

value: Derived from ENCODE donor ENCDO553CCA; https://www.encodeproject.org/ENCDO553CCA/


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB418JLO)

description:
https://www.encodeproject.org/experiments/ENCSR284ZZR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR284ZZR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR958CUX
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB418JLO
fragmentation methods: none


title: Mint-ChIP-seq from nephron (ENCLB055NWW)

description:
https://www.encodeproject.org/experiments/ENCSR096LNY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR096LNY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR397RWM
encode release date: 2021-05-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB055NWW
fragmentation methods: none

source_name: Homo sapiens female embryo (5 days) nephron organoid originated from H9, 21 days post differentiation

value: derived from H9 nephron progenitor cells (NPCs) harvested at day 21

value: healthy

value: embryonic

value: 5 day

value: ENCBS378CGA at ENCODE; https://www.encodeproject.org/ENCBS378CGA/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: pkaR_r2_hr05

value: pkaR

value: precocious development


title: Mint-ChIP-seq from nephron (ENCLB495EPR)

description:
https://www.encodeproject.org/experiments/ENCSR096LNY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR096LNY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR397RWM
encode release date: 2021-05-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB495EPR
fragmentation methods: none

value: nephron

value: organoid

value: female

value: Bradley Bernstein, Broad

value: Joseph Bonventre


title: pkaR_r2_hr02


title: pkaR_r2_hr03


title: pkaR_r2_hr00


title: pkaR_r2_hr04


title: Mint-ChIP-seq from nephron (ENCLB280LXJ)

description:
https://www.encodeproject.org/experiments/ENCSR094NBC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR094NBC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR801AJD
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB280LXJ
fragmentation methods: none

value: ENCBS546COW at ENCODE; https://www.encodeproject.org/ENCBS546COW/


title: Mint-ChIP-seq from nephron (ENCLB572CCZ)

description:
https://www.encodeproject.org/experiments/ENCSR283SJF/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR283SJF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR519LKT
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB572CCZ
fragmentation methods: none

value: ENCBS165DBC at ENCODE; https://www.encodeproject.org/ENCBS165DBC/


title: Mint-ChIP-seq from nephron (ENCLB105AOP)

description:
https://www.encodeproject.org/experiments/ENCSR094NBC/
***************
biological replicate number: 1
technical replicate number: 3
description: H3K27me3 Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR094NBC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR801AJD
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB105AOP
fragmentation methods: none


title: Control Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB538RHC)

description:
https://www.encodeproject.org/experiments/ENCSR283QZJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR283QZJ
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB538RHC

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: unknown

value: David Hafler

value: ENCBS370LJB at ENCODE; https://www.encodeproject.org/ENCBS370LJB/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: Mint-ChIP-seq from nephron (ENCLB874GOO)

description:
https://www.encodeproject.org/experiments/ENCSR094NBC/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR094NBC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR801AJD
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB874GOO
fragmentation methods: none

value: healthy

value: embryonic

value: 5 day

value: ENCBS047TRT at ENCODE; https://www.encodeproject.org/ENCBS047TRT/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from nephron (ENCLB701QEH)

description:
https://www.encodeproject.org/experiments/ENCSR094NBC/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR094NBC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR801AJD
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB701QEH
fragmentation methods: none

value: nephron

value: organoid

value: female


title: Mint-ChIP-seq from nephron (ENCLB564VLR)

description:
https://www.encodeproject.org/experiments/ENCSR094NBC/
***************
biological replicate number: 1
technical replicate number: 4
description: H3K27me3 Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR094NBC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR801AJD
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB564VLR
fragmentation methods: none

value: Bradley Bernstein, Broad

value: Joseph Bonventre

value: ENCBS546COW at ENCODE; https://www.encodeproject.org/ENCBS546COW/


title: Control Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB461ROA)

description:
https://www.encodeproject.org/experiments/ENCSR283QZJ/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR283QZJ
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB461ROA

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017


title: Mint-ChIP-seq from nephron (ENCLB640MOG)

description:
https://www.encodeproject.org/experiments/ENCSR094NBC/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR094NBC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR801AJD
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB640MOG
fragmentation methods: none


title: pkaR_r1_hr08

value: pkaR

value: precocious development


title: pkaR_r1_hr28


title: pkaR_r1_hr05


title: pkaR_r1_hr20


title: pkaR_r1_hr00


title: pkaR_r1_hr04


title: pkaR_r1_hr12


title: pkaR_r1_hr24


title: pkaR_r1_hr03


title: pkaR_r1_hr06


title: pkaR_r1_hr16


title: MybBGFP_r2_hr08

value: MybBGFP

value: WT


title: MybBGFP_r2_hr12


title: MybBGFP_r2_hr24


title: MybBGFP_r2_hr20


title: MybBGFP_r2_hr06


title: MybBGFP_r2_hr05


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB475EKX)

description:
https://www.encodeproject.org/experiments/ENCSR088IMO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR088IMO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR034OUM
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB475EKX
fragmentation methods: none

value: not collected

value: healthy

value: unknown

value: David Hafler

value: ENCBS928WKW at ENCODE; https://www.encodeproject.org/ENCBS928WKW/

value: Derived from ENCODE donor ENCDO258PRN; https://www.encodeproject.org/ENCDO258PRN/


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB390HTG)

description:
https://www.encodeproject.org/experiments/ENCSR088IMO/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR088IMO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR034OUM
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB390HTG
fragmentation methods: none


title: Control Mint-ChIP-seq from CD14-positive monocyte (ENCLB511BGI)

description:
https://www.encodeproject.org/experiments/ENCSR086KHK/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR086KHK
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB511BGI

value: CD14-positive monocyte

value: ENCBS666ANY at ENCODE; https://www.encodeproject.org/ENCBS666ANY/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: pkaR_r1_hr02


title: Control Mint-ChIP-seq from CD14-positive monocyte (ENCLB612FGC)

description:
https://www.encodeproject.org/experiments/ENCSR086KHK/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR086KHK
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB612FGC

value: Bradley Bernstein, Broad


title: MybBGFP_r2_hr02


title: MybBGFP_r2_hr04


title: MybBGFP_r1_hr20


title: MybBGFP_r2_hr01


title: MybBGFP_r2_hr00


title: MybBGFP_r2_hr03


title: MybBGFP_r2_hr16


title: MybBGFP_r1_hr24


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB518KPO)

description:
https://www.encodeproject.org/experiments/ENCSR079JAG/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR079JAG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR917PCR
encode release date: 2020-09-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB518KPO
fragmentation methods: none
instrument models: Illumina HiSeq 2500,Illumina NovaSeq 6000

value: CD4-positive, alpha-beta memory T cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: ENCBS802GRA at ENCODE; https://www.encodeproject.org/ENCBS802GRA/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Control Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB338AAK)

description:
https://www.encodeproject.org/experiments/ENCSR079AKM/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human CD4-positive, CD25-positive, alpha-beta regulatory T cell
experiment encode accession: ENCSR079AKM
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-12-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB338AAK

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: ENCBS342CPO at ENCODE; https://www.encodeproject.org/ENCBS342CPO/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB751EMO)

description:
https://www.encodeproject.org/experiments/ENCSR078ATS/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR078ATS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR243EIU
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB751EMO

source_name: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T primary cell with multiple sclerosis

value: not collected

value: multiple sclerosis

value: ENCBS771DND at ENCODE; https://www.encodeproject.org/ENCBS771DND/

value: Derived from ENCODE donor ENCDO553CCA; https://www.encodeproject.org/ENCDO553CCA/


title: MybBGFP_r1_hr12

value: MybBGFP

value: WT


title: MybBGFP_r1_hr08