title: Mint-ChIP-seq from activated CD4-positive, alpha-beta memory T cell (ENCLB293QIM)

description:
https://www.encodeproject.org/experiments/ENCSR301BKS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR301BKS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR201SEO
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB293QIM
fragmentation methods: none

source_name: Homo sapiens male adult (43 years) activated CD4-positive, alpha-beta memory T primary cell treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads

value: male

value: 43 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS677HEG at ENCODE; https://www.encodeproject.org/ENCBS677HEG/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: ELST#6

status: Public on Jun 15 2021

type: genomic

city: Berlin

first: Felix

last: Thierfelder

address: Charitépl. 1

country: Germany

institute: Charite

hyb_protocol: bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human MethylationEPIC Beadchip and Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol

scan_protocol: Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting

data_processing:
using R (version 4.0.2) minfi_1.36.0 package
arrays from different plattforms were combined using combineArrays function; beta values were normalized using minfi PreprocessFunnorm function; detection p-values was calculated using detectionP function; for methylated and unmethylated signals preprocessIllumina function was used for normalization

label: Cy3, Cy5

molecule: genomic DNA

organism: Homo sapiens

source_name: endolymphatic sac tumors

label_protocol: Standard Illumina Protocol

extract_protocol: genomic DNA was extracted and purified from FFPE tumor samples using Tissue DNA Purification Kit (Promega) according to the manufacturer´s protocol

tag: gender

value: m

tag: age

tag: tissue

value: endolymphatic sac tumors

tag: group

value: sporadic


title: ELST#8


title: ELST#19

value: von Hippel-Lindau syndrome associated


title: ELST#7


title: ELST#3


title: ELST#1

value: f


title: ELST#13


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta memory T cell (ENCLB467PPW)

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR301BKS/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR301BKS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR201SEO
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB467PPW
fragmentation methods: none

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

tag: antibody

value: primary cell

tag: biosample encode accession

tag: Sex

tag: dev stage

value: adult

tag: lab

tag: source

tag: treatments

tag: link


title: ELST#5


title: ELST#10


title: ELST#16


title: ELST#2


title: Mint-ChIP-seq from CD8-positive, alpha-beta T cell (ENCLB771ZQJ)

description:
https://www.encodeproject.org/experiments/ENCSR401BZZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq of CD8-positive, alpha-beta T cell male adult (21 years)
experiment encode accession: ENCSR401BZZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR820SXH
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB771ZQJ
fragmentation methods: none

source_name: Homo sapiens male adult (21 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: 21 year

value: ENCBS832HZD at ENCODE; https://www.encodeproject.org/ENCBS832HZD/

value: Derived from ENCODE donor ENCDO781BMZ; https://www.encodeproject.org/ENCDO781BMZ/


title: Mint-ChIP-seq from CD8-positive, alpha-beta T cell (ENCLB730UCM)

description:
https://www.encodeproject.org/experiments/ENCSR401BZZ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq of CD8-positive, alpha-beta T cell male adult (21 years)
experiment encode accession: ENCSR401BZZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR820SXH
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB730UCM
fragmentation methods: none

value: male


title: TTDV_fruit(45d)_S64

city: College station

first: Hisashi

last: Koiwa

state: Texas

address: 495 Horticulture Rd.

department: Department of Horticultural Sciences

institute: Texas A&M University

library_source: transcriptomic

data_processing:
Sequencing and base calling was performed using Illumina Novaseq6000 by  Texas AgriLife Research Genomics and Bioinformatics Service.  The data was collected using 2x150 paried end configuration.
The reads were aligned to the Melonomics genome sequence: CM3.6.1_pseudomol.fa along with the annotation reference: CM4.0.gtf, using STAR (v2.5.4b)
Differential expression (DE) analysis was performed to identify genes that are significantly differentially expressed in the fruits at different development stages relative to leaves using edgeR (v3.12.1), based on the gene quantification measured by STAR (v2.5.4b)
Genome_build: CM3.6.1
Supplementary_files_format_and_content: CSV files were generated using edgeR

molecule: total RNA

organism: Cucumis melo

growth_protocol: The study was conducted during the spring growing season (March–June) in fields located at the Texas A&M AgriLife Research Center – Texas A&M University System in Weslaco, Texas (latitude 26◦ 9’ N, longitude 97◦ 57’ W; elevation 21 m). This region has a humid sub-tropical climate regime with over 300 frost-free days. The predominant soil type in the study field is a Hidalgo sandy clay loam (pH 7.2–8.3). Six-week-old seedlings were transplanted on March 15, 2019 and managed following standard commercial practices for melon production which include raised beds covered with plastic mulch and subsurface drip irrigation. Irrigation scheduling was based on soil moisture depletion measured with granular matrix soil moisture sensors (Watermark®, Irrometer Co., Riverside, CA). Pre-plant soil analyses indicated adequate calcium (Ca) magnesium (Mg) and potassium (K) levels (3.7, 0.38 and 0.36 g kg− 1 respectively). Through the growing season the crop received (125 kg N⋅ha− 1 using urea ammonium nitrate) in split doses. A micro- nutrient fertilizer (Foli-GroTM Micro-Mix; Wilbur–Ellis, Co, Fresno, CA, USA) containing magnesium (Mg, 0.5 g kg− 1), boron (B, 2.5 g kg− 1), copper (Cu, 2.5 g kg− 1), iron (Fe, 5.0 g kg− 1), manganese (Mn, 5.0 g kg− 1), molybdenum (Mo, 0.025 g kg− 1), and zinc (Zn, 20 g kg− 1) was applied with foliar pesticide treatments at the vine elongation stage, at a rate of 4.6 L⋅ha− 1. Representative weather conditions during the 2019 growing season were: air temperature, 25.7 ◦C; air relative hu- midity, 57.9 %; solar radiation, 18.4 MJ m-2⋅d− 1; and total precipitation, 361.7 mm.

extract_protocol:
Approximately 0.25 g of the powdered, frozen tissues were mixed with 1 ml of Trizol reagent (ThermoFisher) and incubate for 5 minutes.  The solution was mixed with 0.5 ml of chloroform and centrifuged at 12,000g for 10 minutes after incubation for 5 minutes.  The aqueous phase was mixed with 350 µl of ethanol and loaded to an EconoSpin column (Epoch Life Science), and centrifuged at 8,000 g for 40 seconds.  The column was washed twice with 450 µl of 3M sodium acetate and with 320 µl of 70% ethanol.  RNA was eluted with 30 µl of RNase-free water.  Subsequently, RNA samples were treated with DNase and cleaned up with phenol-chloroform extraction and ethanol precipitation.
cDNA libraries were synthesized using Universal Plus mRNA-seq with NuQuant Kit (NuGen) according to the manufacturer's protocol

value: Fruit


title: TTDV_fruit(45d)_S62


title: microRNA-seq from endothelial cell (ENCLB059PXL)

description:
https://www.encodeproject.org/experiments/ENCSR503DWS/
***************
biological replicate number: 1
technical replicate number: 2
description: RNA Evaluation PGP1 endothelial cells microRNA-seq from Mortazavi
experiment encode accession: ENCSR503DWS
assay title: microRNA-seq
assembly: GRCh38
encode release date: 2020-01-24
lab: Ali Mortazavi, UCI
library encode accession: ENCLB059PXL
size range: <30

source_name: Homo sapiens male adult (53 years) endothelial in vitro differentiated cells, preserved by cryopreservation

value: endothelial cell

value: in vitro differentiated cells

tag: description

value: PGP1 derived endothelial cells

value: 53 year

value: Bradley Bernstein, Broad

value: George Church

value: ENCBS239VAD at ENCODE; https://www.encodeproject.org/ENCBS239VAD/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: TTDV_fruit(45d)_S63


title: microRNA-seq from endothelial cell (ENCLB724MMK)

description:
https://www.encodeproject.org/experiments/ENCSR503DWS/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation PGP1 endothelial cells microRNA-seq from Mortazavi
experiment encode accession: ENCSR503DWS
assay title: microRNA-seq
assembly: GRCh38
encode release date: 2020-01-24
lab: Ali Mortazavi, UCI
library encode accession: ENCLB724MMK
size range: <30


title: TTDV_fruit(40d)_S18


title: Mint-ChIP-seq from T-cell (ENCLB693APV)

description:
https://www.encodeproject.org/experiments/ENCSR503BKX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq of T-cell male adult (42 years)
experiment encode accession: ENCSR503BKX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR445KDW
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB693APV
fragmentation methods: none

source_name: Homo sapiens male adult (42 years) T-cell primary cell

value: T-cell

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS038FPK at ENCODE; https://www.encodeproject.org/ENCBS038FPK/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: TTDV_fruit(40d)_S17


title: TTDV_fruit(40d)_S16


title: TTDV_fruit(30-35d)_S15


title: TTDV_fruit(30-35d)_S14


title: Mint-ChIP-seq from T-cell (ENCLB928HGI)

description:
https://www.encodeproject.org/experiments/ENCSR503BKX/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq of T-cell male adult (42 years)
experiment encode accession: ENCSR503BKX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR445KDW
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB928HGI
fragmentation methods: none

value: primary cell

value: adult


title: TTDV_fruit(30-35d)_S13

value: Fruit


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB640ETS)

description:
https://www.encodeproject.org/experiments/ENCSR406RTH/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human CD4-positive, CD25-positive, alpha-beta regulatory T cell
experiment encode accession: ENCSR406RTH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR156VQN
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB640ETS
fragmentation methods: none

source_name: Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T primary cell, preserved by cryopreservation

value: Treg CD3+ CD4+ CD8- CD25+ CD127-

value: not collected

tag: health state

value: healthy

value: unknown

value: David Hafler

value: ENCBS681GZX at ENCODE; https://www.encodeproject.org/ENCBS681GZX/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: c23_iPSC_p35

city: Farmington

first: Stefan

middle: F

last: Pinter

state: CT

address: 263 Farmington Avenue

department: Genetics and Genome Sciences

institute: University of Connecticut, UConn Health

description: C23XX iPSC MEFs p35

hyb_protocol: Hybridized using the Infinium Methylation EPIC BeadChip Kit (Illumina) following standard protocol of the manufacturer.

scan_protocol: BeadChips were imaged using standard recommended Illumina scanner settings.

data_processing: GenomeStudio Methylation Module.

label: Cy5, Cy3

label_protocol: Genomic DNA was bisulfite-converted using the EZ DNA Methylation Kit (Zymo Research), then labeled using the Infinium Methylation EPIC BeadChip Kit (Illumina) following standard protocol of each manufacturer.

growth_protocol: hiPSCs were cultured on mitotically inactive mouse embryonic fibroblasts in standard hiPSC media (80% DMEM/F12, 20% Knockout Serum Replacement, 1% Glutamax, 1% Non-Essential Amino Acids, 0.1% β-Mercaptoethanol, and 8ng/mL bFGF), and passaged weekly by manual disruption of 10-20 representative colonies.

extract_protocol: For DNA extraction, cells were pelleted and resuspended in cell lysis buffer (10 mM Tris-HCl, pH 8.0; 100 mM NaCl; 10 mM EDTA, pH 8.0; 1% SDS; 200 μg/ml Proteinase K) and incubated at 55°C overnight. DNA was isolated using Phenol:Chloroform:Isoamyl Alcohol (25:24:1, v/v), precipitated with isopropanol, washed with 70% ethanol, and resuspended in TE buffer.

treatment_protocol: None, longitudinal culture by serial weekly passaging over 24 weeks.

tag: cell type

value: iPSC

value: female

tag: passage

value: B


title: c23_iPSC_p32

description: C23XX iPSC MEFs p32


title: TTDV_fruit(20-25d)_S12


title: c19_iPSC_p29

description: C19XX iPSC MEFs p29

value: C


title: c19_iPSC_p28

description: C19XX iPSC MEFs p28


title: Mint-ChIP-seq from T-cell (ENCLB164MNA)

description:
https://www.encodeproject.org/experiments/ENCSR503BKX/
***************
biological replicate number: 1
technical replicate number: 3
description: H3K27ac Mint-ChIP-seq of T-cell male adult (42 years)
experiment encode accession: ENCSR503BKX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR445KDW
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB164MNA
fragmentation methods: none

value: T-cell

value: male

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells


title: c23_iPSC_p33

description: C23XX iPSC MEFs p33


title: TTDV_fruit(20-25d)_S11

value: Fruit


title: TTDV_fruit(20-25d)_S10


title: c19_iPSC_p30

description: C19XX iPSC MEFs p30


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB089EPY)

description:
https://www.encodeproject.org/experiments/ENCSR299XIC/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human CD4-positive, CD25-positive, alpha-beta regulatory T cell
experiment encode accession: ENCSR299XIC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR310ZGH
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB089EPY
fragmentation methods: none

value: primary cell

value: Treg CD3+ CD4+ CD8- CD25+ CD127-

value: Bradley Bernstein, Broad

value: ENCBS862LJK at ENCODE; https://www.encodeproject.org/ENCBS862LJK/

value: Derived from ENCODE donor ENCDO922TOC; https://www.encodeproject.org/ENCDO922TOC/


title: c23_iPSC_p25

description: C23XX iPSC MEFs p25


title: F39_fruit(45d)_S61


title: F39_fruit(45d)_S60


title: Mint-ChIP-seq from T-cell (ENCLB079ZTR)

description:
https://www.encodeproject.org/experiments/ENCSR503BKX/
***************
biological replicate number: 1
technical replicate number: 4
description: H3K27ac Mint-ChIP-seq of T-cell male adult (42 years)
experiment encode accession: ENCSR503BKX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR445KDW
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB079ZTR
fragmentation methods: none

value: adult

value: ENCBS038FPK at ENCODE; https://www.encodeproject.org/ENCBS038FPK/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB609LZD)

description:
https://www.encodeproject.org/experiments/ENCSR406RTH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human CD4-positive, CD25-positive, alpha-beta regulatory T cell
experiment encode accession: ENCSR406RTH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR156VQN
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB609LZD
fragmentation methods: none

value: not collected

value: healthy

value: unknown

value: David Hafler

value: ENCBS681GZX at ENCODE; https://www.encodeproject.org/ENCBS681GZX/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: c23_iPSC_p31

description: C23XX iPSC MEFs p31

value: iPSC

value: female

value: B


title: F39_fruit(45d)_S59

value: Fruit


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB533YXP)

description:
https://www.encodeproject.org/experiments/ENCSR299XIC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human CD4-positive, CD25-positive, alpha-beta regulatory T cell
experiment encode accession: ENCSR299XIC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR310ZGH
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB533YXP
fragmentation methods: none

value: primary cell

value: Treg CD3+ CD4+ CD8- CD25+ CD127-


title: F39_fruit(20-25d)_S3


title: c19_iPSC_p32

description: C19XX iPSC MEFs p32

value: C


title: c23_iPSC_p17

description: C23XX iPSC MEF p17

value: A


title: c23_iPSC_p15

description: C23XX iPSC MEF p15


title: F39_fruit(40d)_S9


title: F39_fruit(40d)_S8


title: F39_leaf_S21

value: Leaf


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB595REJ)

description:
https://www.encodeproject.org/experiments/ENCSR097WJR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR097WJR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR688UBO
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB595REJ
fragmentation methods: none

source_name: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T primary cell, preserved by cryopreservation

value: CD4+ naive CD3+ CD4+ CD8- CD45RA+ CD45RO- nonTreg

value: Bradley Bernstein, Broad

value: ENCBS677DRS at ENCODE; https://www.encodeproject.org/ENCBS677DRS/


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB269DHR)

description:
https://www.encodeproject.org/experiments/ENCSR298KVO/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR298KVO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR890AQB
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB269DHR
fragmentation methods: none

source_name: Homo sapiens male adult (30 years) CD8-positive, alpha-beta memory T primary cell

value: CD8-positive, alpha-beta memory T cell

value: male

value: adult

value: 30 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS122NLR at ENCODE; https://www.encodeproject.org/ENCBS122NLR/

value: Derived from ENCODE donor ENCDO166AGR; https://www.encodeproject.org/ENCDO166AGR/


title: c19_iPSC_p19

description: C19XX iPSC MEFs p19

value: iPSC

value: female


title: F39_fruit(40d)_S7

value: Fruit


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB674QEB)

description:
https://www.encodeproject.org/experiments/ENCSR298KVO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR298KVO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR890AQB
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB674QEB
fragmentation methods: none

value: primary cell


title: F39_fruit(30-35d)_S6


title: F39_fruit(30-35d)_S5


title: c19_iPSC_p11

description: C19XX iPSC MEF p11

value: B


title: c19_iPSC_p21

description: C19XX iPSC MEFs p21


title: c23_iPSC_p12

description: C23XX iPSC MEF p12

value: A


title: Mint-ChIP-seq from IgD-negative memory B cell (ENCLB318ZFW)

description:
https://www.encodeproject.org/experiments/ENCSR295QZX/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq of IgD-negative memory B cell originated from IgD-negative memory B cell
experiment encode accession: ENCSR295QZX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR354FME
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB318ZFW
fragmentation methods: none

source_name: Homo sapiens IgD-negative memory B primary cell with multiple sclerosis, preserved by cryopreservation

value: IgD-negative memory B cell

value: B memory CD3- CD14- CD19+ CD27+ IgD-

value: not collected

value: multiple sclerosis

value: unknown

value: David Hafler

value: ENCBS091EUT at ENCODE; https://www.encodeproject.org/ENCBS091EUT/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: Mint-ChIP-seq from IgD-negative memory B cell (ENCLB632MBJ)

description:
https://www.encodeproject.org/experiments/ENCSR295QZX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq of IgD-negative memory B cell originated from IgD-negative memory B cell
experiment encode accession: ENCSR295QZX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR354FME
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB632MBJ
fragmentation methods: none

value: Bradley Bernstein, Broad


title: F39_fruit(30-35d)_S4


title: F39_leaf_S19

value: Leaf


title: c23_iPSC_p20

description: C23XX iPSC MEF p20


title: c19_iPSC_p22

description: C19XX iPSC MEFs p22


title: c19_iPSC_p17

description: C19XX iPSC MEF p17


title: F39_fruit(20-25d)_S2


title: c19_iPSC_p8

description: C19XX IPSC MEF p8


title: F39_fruit(20-25d)_S1


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB639SMT)

description:
https://www.encodeproject.org/experiments/ENCSR278QHR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR278QHR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR034MTZ
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB639SMT
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500,Illumina NovaSeq 6000

source_name: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T primary cell with multiple sclerosis, preserved by cryopreservation

value: CD8+ naive CD3+ CD4- CD8+ CD45RA+ CD45RO-

value: ENCBS512HTQ at ENCODE; https://www.encodeproject.org/ENCBS512HTQ/


title: Mint-ChIP-seq from endothelial cell (ENCLB926TCS)

description:
https://www.encodeproject.org/experiments/ENCSR993KKI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human PGP1 derived endothelial cell
experiment encode accession: ENCSR993KKI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR759ZAX
encode release date: 2021-05-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB926TCS
fragmentation methods: none

value: endothelial cell

value: in vitro differentiated cells

value: PGP1 derived endothelial cells

value: male

value: adult

value: 53 year

value: George Church

value: ENCBS239VAD at ENCODE; https://www.encodeproject.org/ENCBS239VAD/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Mint-ChIP-seq from naive B cell (ENCLB789BOJ)

description:
https://www.encodeproject.org/experiments/ENCSR089VQL/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human naive B cell
experiment encode accession: ENCSR089VQL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR111MNI
encode release date: 2020-09-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB789BOJ
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500,Illumina NovaSeq 6000

source_name: Homo sapiens naive B primary cell with multiple sclerosis, preserved by cryopreservation

value: naive B cell

value: primary cell

value: B naive CD3- CD14- CD19+ CD27- IgD+

value: not collected

value: multiple sclerosis

value: unknown

value: ENCBS743ZAV at ENCODE; https://www.encodeproject.org/ENCBS743ZAV/


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB488AMC)

description:
https://www.encodeproject.org/experiments/ENCSR097WJR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR097WJR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR688UBO
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB488AMC
fragmentation methods: none

value: CD4+ naive CD3+ CD4+ CD8- CD45RA+ CD45RO- nonTreg

value: healthy

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS677DRS at ENCODE; https://www.encodeproject.org/ENCBS677DRS/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: c23_iPSC_p24

description: C23XX iPSC MEFs p24

value: iPSC

value: female

value: B


title: F39_leaf_S20

value: Leaf


title: Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCLB582PBD)

description:
https://www.encodeproject.org/experiments/ENCSR095SRY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR095SRY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR761HQT
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB582PBD
fragmentation methods: none

source_name: Homo sapiens male adult (30 years) CD8-positive naive resting alpha-beta T primary cell

value: male

value: adult

value: 30 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS845PJM at ENCODE; https://www.encodeproject.org/ENCBS845PJM/

value: Derived from ENCODE donor ENCDO166AGR; https://www.encodeproject.org/ENCDO166AGR/


title: Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCLB004CSY)

description:
https://www.encodeproject.org/experiments/ENCSR095SRY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR095SRY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR761HQT
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB004CSY
fragmentation methods: none

value: primary cell


title: Mint-ChIP-seq from IgD-negative memory B cell (ENCLB206WDA)

description:
https://www.encodeproject.org/experiments/ENCSR084FXT/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR084FXT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR354FME
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB206WDA
fragmentation methods: none

value: IgD-negative memory B cell

value: B memory CD3- CD14- CD19+ CD27+ IgD-

value: not collected

value: multiple sclerosis

value: unknown

value: ENCBS091EUT at ENCODE; https://www.encodeproject.org/ENCBS091EUT/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: Control Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB727OBI)

description:
https://www.encodeproject.org/experiments/ENCSR996DNY/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR996DNY
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB727OBI
instrument models: Illumina NovaSeq 6000,Illumina HiSeq 2500

source_name: Homo sapiens CD8-positive, alpha-beta memory T primary cell, preserved by cryopreservation

value: CD8-positive, alpha-beta memory T cell

value: CD8+ memory CD3+ CD4- CD8+ CD45RA- CD45RO+

value: healthy

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS274KKV at ENCODE; https://www.encodeproject.org/ENCBS274KKV/

value: Derived from ENCODE donor ENCDO922TOC; https://www.encodeproject.org/ENCDO922TOC/


title: Control Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB003TLL)

description:
https://www.encodeproject.org/experiments/ENCSR996DNY/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR996DNY
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB003TLL
instrument models: Illumina NovaSeq 6000,Illumina HiSeq 2500


title: c19_iPSC_p13

description: C19XX iPSC MEF p13

value: iPSC

value: female

value: B


title: Mint-ChIP-seq from neural crest cell (ENCLB298QNO)

description:
https://www.encodeproject.org/experiments/ENCSR083DYK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR083DYK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR713YQD
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB298QNO

source_name: Homo sapiens female embryo (5 days) neural crest in vitro differentiated cells originated from neural crest cell

value: neural crest cell

value: in vitro differentiated cells

value: WA09 derived neural crest cells

value: embryonic

value: 5 day

value: SESCC

value: ENCBS417JEU at ENCODE; https://www.encodeproject.org/ENCBS417JEU/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from neural crest cell (ENCLB124DGH)

description:
https://www.encodeproject.org/experiments/ENCSR083DYK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR083DYK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR713YQD
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB124DGH
fragmentation methods: none

value: ENCBS200JOD at ENCODE; https://www.encodeproject.org/ENCBS200JOD/


title: Mint-ChIP-seq from endothelial cell (ENCLB330MBP)

description:
https://www.encodeproject.org/experiments/ENCSR993KKI/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human PGP1 derived endothelial cell
experiment encode accession: ENCSR993KKI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR759ZAX
encode release date: 2021-05-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB330MBP
fragmentation methods: none

value: endothelial cell

value: PGP1 derived endothelial cells

value: male

value: adult

value: 53 year

value: George Church

value: ENCBS239VAD at ENCODE; https://www.encodeproject.org/ENCBS239VAD/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Mint-ChIP-seq from neural crest cell (ENCLB955VGA)

description:
https://www.encodeproject.org/experiments/ENCSR083DYK/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR083DYK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR713YQD
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB955VGA

value: neural crest cell

value: female

value: healthy

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from neural crest cell (ENCLB558LWP)

description:
https://www.encodeproject.org/experiments/ENCSR083DYK/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR083DYK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR713YQD
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB558LWP
fragmentation methods: none

value: in vitro differentiated cells

value: WA09 derived neural crest cells

value: embryonic

value: 5 day


title: c23_iPSC_p22

description: C23XX iPSC MEFs p22

value: iPSC

value: A


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB951UID)

description:
https://www.encodeproject.org/experiments/ENCSR269SSG/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on CD4-positive, alpha-beta memory T cell male adult (43 years)
experiment encode accession: ENCSR269SSG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR817QVK
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB951UID
fragmentation methods: none

source_name: Homo sapiens male adult (43 years) CD4-positive, alpha-beta memory T primary cell

value: CD4-positive, alpha-beta memory T cell

value: primary cell

value: 43 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS050OWF at ENCODE; https://www.encodeproject.org/ENCBS050OWF/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB304KKQ)

description:
https://www.encodeproject.org/experiments/ENCSR896PJY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR896PJY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR996DNY
encode release date: 2020-09-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB304KKQ
fragmentation methods: none
instrument models: Illumina NovaSeq 6000,Illumina HiSeq 2500

value: CD8-positive, alpha-beta memory T cell

value: CD8+ memory CD3+ CD4- CD8+ CD45RA- CD45RO+

value: not collected

value: unknown

value: David Hafler

value: ENCBS274KKV at ENCODE; https://www.encodeproject.org/ENCBS274KKV/

value: Derived from ENCODE donor ENCDO922TOC; https://www.encodeproject.org/ENCDO922TOC/


title: Mint-ChIP-seq from IgD-negative memory B cell (ENCLB167LEW)

description:
https://www.encodeproject.org/experiments/ENCSR084FXT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR084FXT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR354FME
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB167LEW
fragmentation methods: none

value: IgD-negative memory B cell

value: B memory CD3- CD14- CD19+ CD27+ IgD-

value: multiple sclerosis

value: Bradley Bernstein, Broad

value: ENCBS091EUT at ENCODE; https://www.encodeproject.org/ENCBS091EUT/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB319CVH)

description:
https://www.encodeproject.org/experiments/ENCSR274VSS/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR274VSS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR996DNY
encode release date: 2020-09-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB319CVH
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina NovaSeq 6000,Illumina HiSeq 2500

value: primary cell

value: healthy


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB741ZSX)

description:
https://www.encodeproject.org/experiments/ENCSR269SSG/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on CD4-positive, alpha-beta memory T cell male adult (43 years)
experiment encode accession: ENCSR269SSG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR817QVK
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB741ZSX
fragmentation methods: none

value: CD4-positive, alpha-beta memory T cell

value: male

value: adult

value: 43 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS050OWF at ENCODE; https://www.encodeproject.org/ENCBS050OWF/


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta memory T cell (ENCLB364EKZ)

description:
https://www.encodeproject.org/experiments/ENCSR271NYM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq of activated CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng
experiment encode accession: ENCSR271NYM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR201SEO
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB364EKZ
fragmentation methods: none

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS677HEG at ENCODE; https://www.encodeproject.org/ENCBS677HEG/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta memory T cell (ENCLB375CUJ)

description:
https://www.encodeproject.org/experiments/ENCSR271NYM/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq of activated CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng
experiment encode accession: ENCSR271NYM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR201SEO
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB375CUJ
fragmentation methods: none


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB107CAD)

description:
https://www.encodeproject.org/experiments/ENCSR896PJY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR896PJY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR996DNY
encode release date: 2020-09-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB107CAD
fragmentation methods: none
instrument models: Illumina NovaSeq 6000,Illumina HiSeq 2500

value: CD8-positive, alpha-beta memory T cell

value: CD8+ memory CD3+ CD4- CD8+ CD45RA- CD45RO+

value: not collected

value: unknown

value: David Hafler

value: ENCBS274KKV at ENCODE; https://www.encodeproject.org/ENCBS274KKV/

value: Derived from ENCODE donor ENCDO922TOC; https://www.encodeproject.org/ENCDO922TOC/


title: Control ChIP-seq from SK-N-SH (ENCLB514FLM)

description:
https://www.encodeproject.org/experiments/ENCSR456LEZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR456LEZ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB514FLM
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting BACH2 treated with 6 uM all-trans-retinoic acid for 48 hours

tag: line

value: SK-N-SH

value: cell line

value: female

value: Metastatic neuroblastoma from bone marrow

value: child

value: 4 year

value: Michael Snyder, Stanford

value: ATCC

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS747GVX at ENCODE; https://www.encodeproject.org/ENCBS747GVX/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: Mint-ChIP-seq from B cell (ENCLB635KBG)

description:
https://www.encodeproject.org/experiments/ENCSR077YUA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq of B cell male adult (22 years)
experiment encode accession: ENCSR077YUA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR051DHR
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB635KBG
fragmentation methods: none

source_name: Homo sapiens male adult (22 years) B primary cell

value: B cell

value: primary cell

value: male

value: adult

value: 22 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS852RUN at ENCODE; https://www.encodeproject.org/ENCBS852RUN/

value: Derived from ENCODE donor ENCDO383AQS; https://www.encodeproject.org/ENCDO383AQS/


title: Mint-ChIP-seq from B cell (ENCLB663RIV)

description:
https://www.encodeproject.org/experiments/ENCSR077YUA/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq of B cell male adult (22 years)
experiment encode accession: ENCSR077YUA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR051DHR
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB663RIV
fragmentation methods: none


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB324LBG)

description:
https://www.encodeproject.org/experiments/ENCSR077ETS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR077ETS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR165PMH
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB324LBG
fragmentation methods: none

source_name: Homo sapiens male adult (30 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: 30 year

value: ENCBS615HXL at ENCODE; https://www.encodeproject.org/ENCBS615HXL/

value: Derived from ENCODE donor ENCDO544CHQ; https://www.encodeproject.org/ENCDO544CHQ/


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB251DJS)

description:
https://www.encodeproject.org/experiments/ENCSR077ETS/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR077ETS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR165PMH
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB251DJS
fragmentation methods: none


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB065ZHT)

description:
https://www.encodeproject.org/experiments/ENCSR975WTH/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR975WTH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR917PCR
encode release date: 2020-09-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB065ZHT
fragmentation methods: none
instrument models: Illumina NovaSeq 6000,Illumina HiSeq 2500

source_name: Homo sapiens CD4-positive, alpha-beta memory T primary cell, preserved by cryopreservation

value: CD4-positive, alpha-beta memory T cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: not collected

value: healthy

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS802GRA at ENCODE; https://www.encodeproject.org/ENCBS802GRA/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB570IKX)

description:
https://www.encodeproject.org/experiments/ENCSR199APR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR199APR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR165PMH
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB570IKX
fragmentation methods: none

value: primary cell

value: male

value: adult

value: Yijun Ruan, JAX


title: Mint-ChIP-seq from endodermal cell (ENCLB679TKM)

description:
https://www.encodeproject.org/experiments/ENCSR193VOB/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human H9 derived endodermal cell
experiment encode accession: ENCSR193VOB
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR901NYG
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB679TKM
fragmentation methods: none

source_name: Homo sapiens female embryo (5 days) endodermal in vitro differentiated cells originated from endodermal cell

value: endodermal cell

value: in vitro differentiated cells

value: WA09 derived endoderm cells

value: female

value: embryonic

value: 5 day

value: SESCC

value: ENCBS958FWY at ENCODE; https://www.encodeproject.org/ENCBS958FWY/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from excitatory neuron (ENCLB944JLT)

description:
https://www.encodeproject.org/experiments/ENCSR864EXK/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human PGP1 derived excitatory neuron
experiment encode accession: ENCSR864EXK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR508IYL
encode release date: 2020-09-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB944JLT
fragmentation methods: none
instrument models: Illumina NovaSeq 6000,Illumina NextSeq 500

source_name: Homo sapiens male adult (53 years) excitatory neuron in vitro differentiated cells, preserved by cryopreservation

value: excitatory neuron

value: PGP1 derived excitatory cortical neurons

value: 53 year

value: Bradley Bernstein, Broad

value: George Church

value: ENCBS932EVS at ENCODE; https://www.encodeproject.org/ENCBS932EVS/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Mint-ChIP-seq from naive B cell (ENCLB497LLM)

description:
https://www.encodeproject.org/experiments/ENCSR089VQL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human naive B cell
experiment encode accession: ENCSR089VQL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR111MNI
encode release date: 2020-09-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB497LLM
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina NovaSeq 6000,Illumina HiSeq 2500

value: naive B cell

value: primary cell

value: B naive CD3- CD14- CD19+ CD27- IgD+

value: not collected

value: multiple sclerosis

value: unknown

value: David Hafler

value: ENCBS743ZAV at ENCODE; https://www.encodeproject.org/ENCBS743ZAV/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: Mint-ChIP-seq from excitatory neuron (ENCLB340JRY)

description:
https://www.encodeproject.org/experiments/ENCSR864EXK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human PGP1 derived excitatory neuron
experiment encode accession: ENCSR864EXK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR508IYL
encode release date: 2020-09-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB340JRY
fragmentation methods: none
instrument models: Illumina NovaSeq 6000,Illumina NextSeq 500

value: in vitro differentiated cells

value: male

value: adult


title: Mint-ChIP-seq from endodermal cell (ENCLB689TIU)

description:
https://www.encodeproject.org/experiments/ENCSR193VOB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human H9 derived endodermal cell
experiment encode accession: ENCSR193VOB
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR901NYG
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB689TIU
fragmentation methods: none

value: endodermal cell

value: WA09 derived endoderm cells

value: female

value: healthy

value: embryonic

value: 5 day

value: SESCC

value: ENCBS958FWY at ENCODE; https://www.encodeproject.org/ENCBS958FWY/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from endodermal cell (ENCLB949FVH)

description:
https://www.encodeproject.org/experiments/ENCSR193VOB/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human H9 derived endodermal cell
experiment encode accession: ENCSR193VOB
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR901NYG
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB949FVH
fragmentation methods: none

value: Bradley Bernstein, Broad

value: ENCBS601OTT at ENCODE; https://www.encodeproject.org/ENCBS601OTT/


title: Mint-ChIP-seq from activated CD8-positive, alpha-beta T cell (ENCLB999WVZ)

description:
https://www.encodeproject.org/experiments/ENCSR190DMP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR190DMP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR741YCX
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB999WVZ
fragmentation methods: none

source_name: Homo sapiens male adult (21 years) activated CD8-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads

value: primary cell

value: 21 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS458XCC at ENCODE; https://www.encodeproject.org/ENCBS458XCC/

value: Derived from ENCODE donor ENCDO781BMZ; https://www.encodeproject.org/ENCDO781BMZ/


title: Mint-ChIP-seq from endodermal cell (ENCLB174HFG)

description:
https://www.encodeproject.org/experiments/ENCSR193VOB/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human H9 derived endodermal cell
experiment encode accession: ENCSR193VOB
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR901NYG
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB174HFG
fragmentation methods: none

value: endodermal cell

value: in vitro differentiated cells

value: WA09 derived endoderm cells


title: Mint-ChIP-seq from T-cell (ENCLB646NSQ)

description:
https://www.encodeproject.org/experiments/ENCSR190AUR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on T-cell male adult (38 years)
experiment encode accession: ENCSR190AUR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR203XDG
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB646NSQ
fragmentation methods: none

source_name: Homo sapiens male adult (38 years) T-cell primary cell

value: T-cell

value: CD3+ unactivated cells from Stam Lab at Altius.

value: male

value: adult

value: 38 year

value: John Stamatoyannopoulos

value: ENCBS059XUY at ENCODE; https://www.encodeproject.org/ENCBS059XUY/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: Mint-ChIP-seq from T-cell (ENCLB259SSE)

description:
https://www.encodeproject.org/experiments/ENCSR190AUR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on T-cell male adult (38 years)
experiment encode accession: ENCSR190AUR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR203XDG
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB259SSE
fragmentation methods: none

value: primary cell

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from naive B cell (ENCLB309KJD)

description:
https://www.encodeproject.org/experiments/ENCSR260CRI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human naive B cell
experiment encode accession: ENCSR260CRI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR111MNI
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB309KJD
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500,Illumina NovaSeq 6000

value: naive B cell

value: B naive CD3- CD14- CD19+ CD27- IgD+

value: not collected

value: multiple sclerosis

value: unknown

value: David Hafler

value: ENCBS743ZAV at ENCODE; https://www.encodeproject.org/ENCBS743ZAV/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: Mint-ChIP-seq from naive B cell (ENCLB461NTZ)

description:
https://www.encodeproject.org/experiments/ENCSR260CRI/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human naive B cell
experiment encode accession: ENCSR260CRI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR111MNI
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB461NTZ
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500,Illumina NovaSeq 6000


title: Mint-ChIP-seq from activated CD8-positive, alpha-beta T cell (ENCLB370MKW)

description:
https://www.encodeproject.org/experiments/ENCSR190DMP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR190DMP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR741YCX
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB370MKW
fragmentation methods: none

value: 21 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS458XCC at ENCODE; https://www.encodeproject.org/ENCBS458XCC/

value: Derived from ENCODE donor ENCDO781BMZ; https://www.encodeproject.org/ENCDO781BMZ/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB418CEK)

description:
https://www.encodeproject.org/experiments/ENCSR830YQW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR830YQW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR917PCR
encode release date: 2020-09-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB418CEK
fragmentation methods: none
instrument models: Illumina NovaSeq 6000,Illumina HiSeq 2500

value: CD4-positive, alpha-beta memory T cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: healthy

value: ENCBS802GRA at ENCODE; https://www.encodeproject.org/ENCBS802GRA/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Mint-ChIP-seq from T-cell (ENCLB583TRA)

description:
https://www.encodeproject.org/experiments/ENCSR258RXP/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on T-cell male adult (38 years)
experiment encode accession: ENCSR258RXP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR203XDG
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB583TRA
fragmentation methods: none

value: T-cell

value: primary cell

value: CD3+ unactivated cells from Stam Lab at Altius.

value: male

value: adult

value: 38 year

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: ENCBS059XUY at ENCODE; https://www.encodeproject.org/ENCBS059XUY/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB644ZDD)

description:
https://www.encodeproject.org/experiments/ENCSR830YQW/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR830YQW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR917PCR
encode release date: 2020-09-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB644ZDD
fragmentation methods: none
instrument models: Illumina NovaSeq 6000,Illumina HiSeq 2500

value: not collected

value: unknown

value: David Hafler


title: Mint-ChIP-seq from GM23338 (ENCLB057ZMX)

description:
https://www.encodeproject.org/experiments/ENCSR828GHL/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human GM23338
experiment encode accession: ENCSR828GHL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR787HYA
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB057ZMX
fragmentation methods: none
instrument models: Illumina NovaSeq 6000,Illumina NextSeq 500

source_name: Homo sapiens GM23338 cell line

value: cell line

value: PGP-1 iPSCs provided by the George Church lab at HMS. purity 100%

value: 53 year

value: Paola Arlotta

value: ENCBS695QJS at ENCODE; https://www.encodeproject.org/ENCBS695QJS/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB511YYV)

description:
https://www.encodeproject.org/experiments/ENCSR183IQU/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR183IQU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR917PCR
encode release date: 2020-09-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB511YYV
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina NovaSeq 6000,Illumina HiSeq 2500

value: CD4-positive, alpha-beta memory T cell

value: primary cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: healthy

value: ENCBS802GRA at ENCODE; https://www.encodeproject.org/ENCBS802GRA/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Mint-ChIP-seq from T-cell (ENCLB298QPH)

description:
https://www.encodeproject.org/experiments/ENCSR258RXP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on T-cell male adult (38 years)
experiment encode accession: ENCSR258RXP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR203XDG
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB298QPH
fragmentation methods: none

value: T-cell

value: CD3+ unactivated cells from Stam Lab at Altius.

value: male

value: adult

value: 38 year

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: ENCBS059XUY at ENCODE; https://www.encodeproject.org/ENCBS059XUY/


title: Mint-ChIP-seq from GM23338 (ENCLB721YYL)

description:
https://www.encodeproject.org/experiments/ENCSR828GHL/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human GM23338
experiment encode accession: ENCSR828GHL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR787HYA
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB721YYL
fragmentation methods: none
instrument models: Illumina NovaSeq 6000,Illumina NextSeq 500

value: cell line

value: PGP-1 iPSCs provided by the George Church lab at HMS. purity 100%

value: 53 year

value: Paola Arlotta

value: ENCBS299FWQ at ENCODE; https://www.encodeproject.org/ENCBS299FWQ/


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB076SOL)

description:
https://www.encodeproject.org/experiments/ENCSR257NUP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR257NUP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR890AQB
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB076SOL
fragmentation methods: none

source_name: Homo sapiens male adult (30 years) CD8-positive, alpha-beta memory T primary cell

value: CD8-positive, alpha-beta memory T cell

value: primary cell

value: 30 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS122NLR at ENCODE; https://www.encodeproject.org/ENCBS122NLR/

value: Derived from ENCODE donor ENCDO166AGR; https://www.encodeproject.org/ENCDO166AGR/


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB533VBF)

description:
https://www.encodeproject.org/experiments/ENCSR199APR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR199APR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR165PMH
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB533VBF
fragmentation methods: none

value: CD14-positive monocyte

value: male

value: adult

value: ENCBS615HXL at ENCODE; https://www.encodeproject.org/ENCBS615HXL/

value: Derived from ENCODE donor ENCDO544CHQ; https://www.encodeproject.org/ENCDO544CHQ/


title: Mint-ChIP-seq from GM23338 (ENCLB117FRY)

description:
https://www.encodeproject.org/experiments/ENCSR828GHL/
***************
biological replicate number: 3
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human GM23338
experiment encode accession: ENCSR828GHL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR787HYA
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB117FRY
fragmentation methods: none
instrument models: Illumina NovaSeq 6000,Illumina NextSeq 500

value: cell line

value: Bradley Bernstein, Broad

value: ENCBS695QJS at ENCODE; https://www.encodeproject.org/ENCBS695QJS/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Mint-ChIP-seq from GM23338 (ENCLB803TGM)

description:
https://www.encodeproject.org/experiments/ENCSR828GHL/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human GM23338
experiment encode accession: ENCSR828GHL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR787HYA
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB803TGM
fragmentation methods: none
instrument models: Illumina NovaSeq 6000,Illumina NextSeq 500

value: PGP-1 iPSCs provided by the George Church lab at HMS. purity 100%

value: 53 year

value: Paola Arlotta

value: ENCBS299FWQ at ENCODE; https://www.encodeproject.org/ENCBS299FWQ/


title: Mint-ChIP-seq from naive B cell (ENCLB111VCB)

description:
https://www.encodeproject.org/experiments/ENCSR182NLA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq of naive B cell originated from naive B cell
experiment encode accession: ENCSR182NLA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR163IRW
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB111VCB
fragmentation methods: none

value: naive B cell

value: primary cell

value: B naive CD3- CD14- CD19+ CD27- IgD+

value: not collected

value: multiple sclerosis

value: unknown

value: David Hafler

value: ENCBS345AAH at ENCODE; https://www.encodeproject.org/ENCBS345AAH/

value: Derived from ENCODE donor ENCDO157PKH; https://www.encodeproject.org/ENCDO157PKH/


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB039IJD)

description:
https://www.encodeproject.org/experiments/ENCSR257NUP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR257NUP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR890AQB
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB039IJD
fragmentation methods: none

value: CD8-positive, alpha-beta memory T cell

value: male

value: adult

value: 30 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS122NLR at ENCODE; https://www.encodeproject.org/ENCBS122NLR/

value: Derived from ENCODE donor ENCDO166AGR; https://www.encodeproject.org/ENCDO166AGR/


title: Control ChIP-seq from SK-N-SH (ENCLB702EEE)

description:
https://www.encodeproject.org/experiments/ENCSR422KZB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR422KZB
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB702EEE
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting TFAP2B treated with 6 uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: cell line

value: female

value: Metastatic neuroblastoma from bone marrow

value: child

value: 4 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS485VAI at ENCODE; https://www.encodeproject.org/ENCBS485VAI/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: Control ChIP-seq from K562 (ENCLB791DCX)

description:
https://www.encodeproject.org/experiments/ENCSR425VYE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR425VYE
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB791DCX
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting MYC

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ATCC

value: ENCBS521QMI at ENCODE; https://www.encodeproject.org/ENCBS521QMI/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB590LQD)

description:
https://www.encodeproject.org/experiments/ENCSR278QHR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR278QHR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR034MTZ
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB590LQD
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500,Illumina NovaSeq 6000

source_name: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T primary cell with multiple sclerosis, preserved by cryopreservation

value: primary cell

value: CD8+ naive CD3+ CD4- CD8+ CD45RA+ CD45RO-

value: not collected

value: multiple sclerosis

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS512HTQ at ENCODE; https://www.encodeproject.org/ENCBS512HTQ/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB993FKE)

description:
https://www.encodeproject.org/experiments/ENCSR180NCM/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR180NCM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR899DXS
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB993FKE
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina NovaSeq 6000,Illumina HiSeq 2500

source_name: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T primary cell with multiple sclerosis, preserved by cryopreservation

value: CD4+ naive CD3+ CD4+ CD8- CD45RA+ CD45RO- nonTreg

value: ENCBS067WEN at ENCODE; https://www.encodeproject.org/ENCBS067WEN/


title: Mint-ChIP-seq from naive B cell (ENCLB360TZE)

description:
https://www.encodeproject.org/experiments/ENCSR182NLA/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq of naive B cell originated from naive B cell
experiment encode accession: ENCSR182NLA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR163IRW
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB360TZE
fragmentation methods: none

source_name: Homo sapiens naive B primary cell with multiple sclerosis, preserved by cryopreservation

value: naive B cell

value: B naive CD3- CD14- CD19+ CD27- IgD+

value: ENCBS345AAH at ENCODE; https://www.encodeproject.org/ENCBS345AAH/

value: Derived from ENCODE donor ENCDO157PKH; https://www.encodeproject.org/ENCDO157PKH/


title: Control ChIP-seq from SK-N-SH (ENCLB925LLN)

description:
https://www.encodeproject.org/experiments/ENCSR520CCE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR520CCE
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB925LLN
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting ZNF177 treated with 6 uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: cell line

value: female

value: Metastatic neuroblastoma from bone marrow

value: child

value: 4 year

value: Michael Snyder, Stanford

value: ATCC

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS928MUQ at ENCODE; https://www.encodeproject.org/ENCBS928MUQ/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB318ZNQ)

description:
https://www.encodeproject.org/experiments/ENCSR180NCM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR180NCM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR899DXS
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB318ZNQ
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina NovaSeq 6000,Illumina HiSeq 2500

value: primary cell

value: CD4+ naive CD3+ CD4+ CD8- CD45RA+ CD45RO- nonTreg

value: not collected

value: multiple sclerosis

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: Control ChIP-seq from K562 (ENCLB217GLW)

description:
https://www.encodeproject.org/experiments/ENCSR334KTB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR334KTB
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-03-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB217GLW
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS516DBY at ENCODE; https://www.encodeproject.org/ENCBS516DBY/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: Mint-ChIP-seq from B cell (ENCLB075BIJ)

description:
https://www.encodeproject.org/experiments/ENCSR179LAY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq of B cell male adult (22 years)
experiment encode accession: ENCSR179LAY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR051DHR
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB075BIJ
fragmentation methods: none

value: B cell

value: male

value: 22 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS852RUN at ENCODE; https://www.encodeproject.org/ENCBS852RUN/

value: Derived from ENCODE donor ENCDO383AQS; https://www.encodeproject.org/ENCDO383AQS/


title: Mint-ChIP-seq from B cell (ENCLB225LWF)

description:
https://www.encodeproject.org/experiments/ENCSR179LAY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq of B cell male adult (22 years)
experiment encode accession: ENCSR179LAY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR051DHR
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB225LWF
fragmentation methods: none

value: primary cell


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB530IJP)

description:
https://www.encodeproject.org/experiments/ENCSR248JSH/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR248JSH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR521SOP
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB530IJP
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina NovaSeq 6000,Illumina HiSeq 2500

source_name: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T primary cell, preserved by cryopreservation

value: CD4+ naive CD3+ CD4+ CD8- CD45RA+ CD45RO- nonTreg

value: not collected

value: healthy

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS892TKW at ENCODE; https://www.encodeproject.org/ENCBS892TKW/

value: Derived from ENCODE donor ENCDO922TOC; https://www.encodeproject.org/ENCDO922TOC/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB868TXR)

description:
https://www.encodeproject.org/experiments/ENCSR183IQU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR183IQU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR917PCR
encode release date: 2020-09-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB868TXR
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina NovaSeq 6000,Illumina HiSeq 2500

value: CD4-positive, alpha-beta memory T cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: ENCBS802GRA at ENCODE; https://www.encodeproject.org/ENCBS802GRA/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB589AGE)

description:
https://www.encodeproject.org/experiments/ENCSR248JSH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR248JSH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR521SOP
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB589AGE
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina NovaSeq 6000,Illumina HiSeq 2500


title: Control Mint-ChIP-seq from activated CD4-positive, alpha-beta memory T cell (ENCLB339CDK)

description:
https://www.encodeproject.org/experiments/ENCSR176HLK/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq of activated CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR176HLK
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-04-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB339CDK

source_name: Homo sapiens male adult (43 years) activated CD4-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads

value: male

value: adult

value: 43 year

value: Yijun Ruan, JAX

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS514SPI at ENCODE; https://www.encodeproject.org/ENCBS514SPI/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB353GMO)

description:
https://www.encodeproject.org/experiments/ENCSR919DFZ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR919DFZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR283LWF
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB353GMO
fragmentation methods: none
instrument models: Illumina NovaSeq 6000,Illumina HiSeq 2500

source_name: Homo sapiens CD4-positive, alpha-beta memory T primary cell with multiple sclerosis, preserved by cryopreservation

value: primary cell

value: not collected

value: multiple sclerosis

value: ENCBS812ZCI at ENCODE; https://www.encodeproject.org/ENCBS812ZCI/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: Mint-ChIP-seq from excitatory neuron (ENCLB098BKD)

description:
https://www.encodeproject.org/experiments/ENCSR818PER/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human PGP1 derived excitatory neuron
experiment encode accession: ENCSR818PER
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR508IYL
encode release date: 2020-09-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB098BKD
fragmentation methods: none
instrument models: Illumina NovaSeq 6000,Illumina NextSeq 500

value: excitatory neuron

value: in vitro differentiated cells

value: PGP1 derived excitatory cortical neurons

value: 53 year

value: Bradley Bernstein, Broad

value: George Church

value: ENCBS932EVS at ENCODE; https://www.encodeproject.org/ENCBS932EVS/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB488XZX)

description:
https://www.encodeproject.org/experiments/ENCSR919DFZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR919DFZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR283LWF
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB488XZX
fragmentation methods: none
instrument models: Illumina NovaSeq 6000,Illumina HiSeq 2500

value: CD4-positive, alpha-beta memory T cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: unknown

value: David Hafler


title: Control Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB240NQP)

description:
https://www.encodeproject.org/experiments/ENCSR917PCR/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR917PCR
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB240NQP
instrument models: Illumina NovaSeq 6000,Illumina HiSeq 2500

source_name: Homo sapiens CD4-positive, alpha-beta memory T primary cell, preserved by cryopreservation

value: primary cell

value: healthy

value: ENCBS802GRA at ENCODE; https://www.encodeproject.org/ENCBS802GRA/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Mint-ChIP-seq from activated CD8-positive, alpha-beta T cell (ENCLB631TAP)

description:
https://www.encodeproject.org/experiments/ENCSR174DBN/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq of activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR174DBN
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR741YCX
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB631TAP
fragmentation methods: none

value: male

value: adult

value: 21 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS458XCC at ENCODE; https://www.encodeproject.org/ENCBS458XCC/

value: Derived from ENCODE donor ENCDO781BMZ; https://www.encodeproject.org/ENCDO781BMZ/


title: Control ChIP-seq from K562 (ENCLB963KDH)

description:
https://www.encodeproject.org/experiments/ENCSR315TRH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR315TRH
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB963KDH
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting TFAM

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: ATCC

value: ENCBS819ICC at ENCODE; https://www.encodeproject.org/ENCBS819ICC/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: Control Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB540QPF)

description:
https://www.encodeproject.org/experiments/ENCSR917PCR/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR917PCR
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB540QPF
instrument models: Illumina NovaSeq 6000,Illumina HiSeq 2500

value: CD4-positive, alpha-beta memory T cell

value: primary cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: not collected

value: healthy

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS802GRA at ENCODE; https://www.encodeproject.org/ENCBS802GRA/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB236JAZ)

description:
https://www.encodeproject.org/experiments/ENCSR069KMA/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human CD4-positive, CD25-positive, alpha-beta regulatory T cell
experiment encode accession: ENCSR069KMA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR156VQN
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB236JAZ
fragmentation methods: none

source_name: Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T primary cell, preserved by cryopreservation

value: Treg CD3+ CD4+ CD8- CD25+ CD127-

value: ENCBS681GZX at ENCODE; https://www.encodeproject.org/ENCBS681GZX/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB239SNB)

description:
https://www.encodeproject.org/experiments/ENCSR173THP/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR173THP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR546UUS
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB239SNB
fragmentation methods: none

source_name: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T primary cell, preserved by cryopreservation

value: CD8+ naive CD3+ CD4- CD8+ CD45RA+ CD45RO-

value: ENCBS872QPK at ENCODE; https://www.encodeproject.org/ENCBS872QPK/

value: Derived from ENCODE donor ENCDO922TOC; https://www.encodeproject.org/ENCDO922TOC/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB423VXX)

description:
https://www.encodeproject.org/experiments/ENCSR173THP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR173THP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR546UUS
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB423VXX
fragmentation methods: none


title: Control Mint-ChIP-seq from CD14-positive monocyte (ENCLB250SWQ)

description:
https://www.encodeproject.org/experiments/ENCSR165PMH/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR165PMH
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB250SWQ

source_name: Homo sapiens male adult (30 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: male

value: adult

value: 30 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS615HXL at ENCODE; https://www.encodeproject.org/ENCBS615HXL/

value: Derived from ENCODE donor ENCDO544CHQ; https://www.encodeproject.org/ENCDO544CHQ/


title: Control Mint-ChIP-seq from CD14-positive monocyte (ENCLB386VCJ)

description:
https://www.encodeproject.org/experiments/ENCSR165PMH/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR165PMH
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB386VCJ

value: primary cell


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB167WQO)

description:
https://www.encodeproject.org/experiments/ENCSR163WVR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR163WVR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR521SOP
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB167WQO
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina NovaSeq 6000,Illumina HiSeq 2500

value: CD4+ naive CD3+ CD4+ CD8- CD45RA+ CD45RO- nonTreg

value: not collected

value: healthy

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS892TKW at ENCODE; https://www.encodeproject.org/ENCBS892TKW/


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB954RGK)

description:
https://www.encodeproject.org/experiments/ENCSR163WVR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR163WVR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR521SOP
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB954RGK
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina NovaSeq 6000,Illumina HiSeq 2500

value: Derived from ENCODE donor ENCDO922TOC; https://www.encodeproject.org/ENCDO922TOC/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB310GDY)

description:
https://www.encodeproject.org/experiments/ENCSR245HFY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on CD4-positive, alpha-beta memory T cell male adult (43 years)
experiment encode accession: ENCSR245HFY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR817QVK
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB310GDY
fragmentation methods: none

source_name: Homo sapiens male adult (43 years) CD4-positive, alpha-beta memory T primary cell

value: CD4-positive, alpha-beta memory T cell

value: 43 year

value: ENCBS050OWF at ENCODE; https://www.encodeproject.org/ENCBS050OWF/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB360YOU)

description:
https://www.encodeproject.org/experiments/ENCSR685BBN/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR685BBN
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365IQY
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB360YOU
fragmentation methods: none

source_name: Homo sapiens CD14-positive monocyte primary cell, preserved by cryopreservation

value: CD14-positive monocyte

value: Monocyte CD3- CD14+ CD19-

value: ENCBS747UFJ at ENCODE; https://www.encodeproject.org/ENCBS747UFJ/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB955HZV)

description:
https://www.encodeproject.org/experiments/ENCSR245HFY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on CD4-positive, alpha-beta memory T cell male adult (43 years)
experiment encode accession: ENCSR245HFY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR817QVK
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB955HZV
fragmentation methods: none

value: male

value: adult

value: Yijun Ruan, JAX

value: AllCells


title: Control ChIP-seq from SK-N-SH (ENCLB696MBQ)

description:
https://www.encodeproject.org/experiments/ENCSR513QXU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR513QXU
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB696MBQ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting TOX treated with 6 uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: cell line

value: female

value: Metastatic neuroblastoma from bone marrow

value: child

value: 4 year

value: Michael Snyder, Stanford

value: ATCC

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS184UYX at ENCODE; https://www.encodeproject.org/ENCBS184UYX/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: Mint-ChIP-seq from excitatory neuron (ENCLB374JQL)

description:
https://www.encodeproject.org/experiments/ENCSR818PER/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human PGP1 derived excitatory neuron
experiment encode accession: ENCSR818PER
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR508IYL
encode release date: 2020-09-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB374JQL
fragmentation methods: none
instrument models: Illumina NovaSeq 6000,Illumina NextSeq 500

source_name: Homo sapiens male adult (53 years) excitatory neuron in vitro differentiated cells, preserved by cryopreservation

value: excitatory neuron

value: in vitro differentiated cells

value: PGP1 derived excitatory cortical neurons

value: 53 year

value: Bradley Bernstein, Broad

value: George Church

value: ENCBS932EVS at ENCODE; https://www.encodeproject.org/ENCBS932EVS/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB599SBJ)

description:
https://www.encodeproject.org/experiments/ENCSR685BBN/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR685BBN
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR365IQY
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB599SBJ
fragmentation methods: none

value: CD14-positive monocyte

value: primary cell

value: Monocyte CD3- CD14+ CD19-

value: not collected

value: healthy

value: unknown

value: David Hafler

value: ENCBS747UFJ at ENCODE; https://www.encodeproject.org/ENCBS747UFJ/

value: Derived from ENCODE donor ENCDO922TOC; https://www.encodeproject.org/ENCDO922TOC/


title: Control ChIP-seq from SK-N-SH (ENCLB753KEB)

description:
https://www.encodeproject.org/experiments/ENCSR301FVM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR301FVM
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-01-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB753KEB
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line treated with 6 uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: cell line

value: female

value: Metastatic neuroblastoma from bone marrow

value: child

value: 4 year

value: Michael Snyder, Stanford

value: ATCC

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS515FQY at ENCODE; https://www.encodeproject.org/ENCBS515FQY/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB841TDV)

description:
https://www.encodeproject.org/experiments/ENCSR243QSZ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR243QSZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR622ZKD
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB841TDV
fragmentation methods: none

source_name: Homo sapiens CD8-positive, alpha-beta memory T primary cell, preserved by cryopreservation

value: CD8-positive, alpha-beta memory T cell

value: primary cell

value: CD8+ memory CD3+ CD4- CD8+ CD45RA- CD45RO+

value: not collected

value: Bradley Bernstein, Broad

value: ENCBS235RVH at ENCODE; https://www.encodeproject.org/ENCBS235RVH/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB821WRV)

description:
https://www.encodeproject.org/experiments/ENCSR243QSZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR243QSZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR622ZKD
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB821WRV
fragmentation methods: none

value: healthy

value: unknown

value: David Hafler