title: Mint-ChIP-seq from activated CD8-positive, alpha-beta T cell (ENCLB598YBF)

description:
https://www.encodeproject.org/experiments/ENCSR772DTU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq of activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR772DTU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR741YCX
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB598YBF
fragmentation methods: none

source_name: Homo sapiens male adult (21 years) activated CD8-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads

value: primary cell

value: Yijun Ruan, JAX

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS458XCC at ENCODE; https://www.encodeproject.org/ENCBS458XCC/


title: Mint-ChIP-seq from activated CD8-positive, alpha-beta T cell (ENCLB114FHB)

status: Public on Jun 15 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR772DTU/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq of activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR772DTU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR741YCX
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB114FHB
fragmentation methods: none

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

tag: antibody

tag: biosample encode accession

tag: Sex

value: male

tag: dev stage

value: adult

tag: age

value: 21 year

tag: lab

tag: source

value: AllCells

tag: treatments

tag: link

value: Derived from ENCODE donor ENCDO781BMZ; https://www.encodeproject.org/ENCDO781BMZ/


title: Mint-ChIP-seq from activated CD4 positive, naive alpha-beta T cell (ENCLB299DBH)

description:
https://www.encodeproject.org/experiments/ENCSR767FNB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq of activated CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR767FNB
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR053AWV
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB299DBH
fragmentation methods: none

source_name: Homo sapiens male adult (43 years) activated CD4 positive, naive alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads

value: 43 year

value: ENCBS212SYV at ENCODE; https://www.encodeproject.org/ENCBS212SYV/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: Mint-ChIP-seq from activated CD4 positive, naive alpha-beta T cell (ENCLB472VJL)

description:
https://www.encodeproject.org/experiments/ENCSR765ULM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR765ULM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR053AWV
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB472VJL
fragmentation methods: none


title: Mint-ChIP-seq from activated CD4 positive, naive alpha-beta T cell (ENCLB084ANZ)

description:
https://www.encodeproject.org/experiments/ENCSR765ULM/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR765ULM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR053AWV
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB084ANZ
fragmentation methods: none


title: Mint-ChIP-seq from activated CD4 positive, naive alpha-beta T cell (ENCLB731QTS)

description:
https://www.encodeproject.org/experiments/ENCSR767FNB/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq of activated CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR767FNB
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR053AWV
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB731QTS
fragmentation methods: none


title: Control Mint-ChIP-seq from activated CD4 positive, naive alpha-beta T cell (ENCLB242KIC)

description:
https://www.encodeproject.org/experiments/ENCSR764JRB/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq of activated CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng
experiment encode accession: ENCSR764JRB
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-04-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB242KIC

source_name: Homo sapiens male adult (43 years) activated CD4 positive, naive alpha-beta T primary cell treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS377CVF at ENCODE; https://www.encodeproject.org/ENCBS377CVF/


title: Mint-ChIP-seq from activated CD8-positive, alpha-beta T cell (ENCLB281TXG)

description:
https://www.encodeproject.org/experiments/ENCSR765BUP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq of activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng
experiment encode accession: ENCSR765BUP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR651JZJ
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB281TXG
fragmentation methods: none

source_name: Homo sapiens male adult (21 years) activated CD8-positive, alpha-beta T primary cell treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads

value: ENCBS387CPR at ENCODE; https://www.encodeproject.org/ENCBS387CPR/


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta memory T cell (ENCLB106PQA)

description:
https://www.encodeproject.org/experiments/ENCSR764KHZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq of activated CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR764KHZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR176HLK
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB106PQA
fragmentation methods: none

source_name: Homo sapiens male adult (43 years) activated CD4-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads

value: ENCBS514SPI at ENCODE; https://www.encodeproject.org/ENCBS514SPI/


title: Mint-ChIP-seq from IgD-negative memory B cell (ENCLB209SNF)

description:
https://www.encodeproject.org/experiments/ENCSR763KTE/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq of IgD-negative memory B cell originated from IgD-negative memory B cell
experiment encode accession: ENCSR763KTE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR519VQC
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB209SNF
fragmentation methods: none

source_name: Homo sapiens IgD-negative memory B primary cell, preserved by cryopreservation

value: IgD-negative memory B cell

tag: description

value: B memory CD3- CD14- CD19+ CD27+ IgD-

value: not collected

tag: health state

value: healthy

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS318ZNB at ENCODE; https://www.encodeproject.org/ENCBS318ZNB/

value: Derived from ENCODE donor ENCDO922TOC; https://www.encodeproject.org/ENCDO922TOC/


title: Mint-ChIP-seq from IgD-negative memory B cell (ENCLB060KSZ)

description:
https://www.encodeproject.org/experiments/ENCSR763KTE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq of IgD-negative memory B cell originated from IgD-negative memory B cell
experiment encode accession: ENCSR763KTE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR519VQC
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB060KSZ
fragmentation methods: none

value: primary cell


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta memory T cell (ENCLB396FUT)

description:
https://www.encodeproject.org/experiments/ENCSR764KHZ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq of activated CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR764KHZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR176HLK
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB396FUT
fragmentation methods: none

value: male

value: adult

value: 43 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB119REK)

description:
https://www.encodeproject.org/experiments/ENCSR780GTM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR780GTM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR546UUS
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB119REK
fragmentation methods: none

source_name: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T primary cell, preserved by cryopreservation

value: CD8+ naive CD3+ CD4- CD8+ CD45RA+ CD45RO-

value: ENCBS872QPK at ENCODE; https://www.encodeproject.org/ENCBS872QPK/


title: Control Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCLB773QJG)

description:
https://www.encodeproject.org/experiments/ENCSR761HQT/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq of CD8-positive naive resting alpha-beta T cell male adult (30 years)
experiment encode accession: ENCSR761HQT
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-04-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB773QJG

source_name: Homo sapiens male adult (30 years) CD8-positive naive resting alpha-beta T primary cell

value: 30 year

value: ENCBS845PJM at ENCODE; https://www.encodeproject.org/ENCBS845PJM/

value: Derived from ENCODE donor ENCDO166AGR; https://www.encodeproject.org/ENCDO166AGR/


title: Control Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCLB400EFJ)

description:
https://www.encodeproject.org/experiments/ENCSR761HQT/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq of CD8-positive naive resting alpha-beta T cell male adult (30 years)
experiment encode accession: ENCSR761HQT
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-04-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB400EFJ


title: Control Mint-ChIP-seq from activated CD4 positive, naive alpha-beta T cell (ENCLB770CRW)

description:
https://www.encodeproject.org/experiments/ENCSR764JRB/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq of activated CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng
experiment encode accession: ENCSR764JRB
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-04-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB770CRW

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS377CVF at ENCODE; https://www.encodeproject.org/ENCBS377CVF/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB763FSF)

description:
https://www.encodeproject.org/experiments/ENCSR641ZFV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR641ZFV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR131SAQ
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB763FSF
fragmentation methods: none

source_name: Homo sapiens CD4-positive, alpha-beta memory T primary cell with multiple sclerosis, preserved by cryopreservation

value: CD4-positive, alpha-beta memory T cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: not collected

value: multiple sclerosis

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS702KJW at ENCODE; https://www.encodeproject.org/ENCBS702KJW/

value: Derived from ENCODE donor ENCDO157PKH; https://www.encodeproject.org/ENCDO157PKH/


title: Mint-ChIP-seq from CD4-positive, alpha-beta T cell (ENCLB825PZU)

description:
https://www.encodeproject.org/experiments/ENCSR757VXV/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on CD4-positive, alpha-beta T cell male adult (20 years)
experiment encode accession: ENCSR757VXV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR774CGN
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB825PZU
fragmentation methods: none

source_name: Homo sapiens male adult (20 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: male

value: adult

value: 20 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS151VTD at ENCODE; https://www.encodeproject.org/ENCBS151VTD/

value: Derived from ENCODE donor ENCDO394DKX; https://www.encodeproject.org/ENCDO394DKX/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB156NEO)

description:
https://www.encodeproject.org/experiments/ENCSR641ZFV/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR641ZFV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR131SAQ
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB156NEO
fragmentation methods: none

value: CD4-positive, alpha-beta memory T cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg


title: Mint-ChIP-seq from H9 (ENCLB623JNX)

description:
https://www.encodeproject.org/experiments/ENCSR756IGI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR756IGI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR931GAK
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB623JNX
fragmentation methods: none

source_name: Homo sapiens H9 cell line originated from H9

tag: line

value: cell line

value: WA09 ES cells

value: female

value: healthy

value: embryonic

value: 5 day

value: SESCC

value: ENCBS654ADT at ENCODE; https://www.encodeproject.org/ENCBS654ADT/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta memory T cell (ENCLB510MXS)

description:
https://www.encodeproject.org/experiments/ENCSR640GZL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR640GZL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR201SEO
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB510MXS
fragmentation methods: none

source_name: Homo sapiens male adult (43 years) activated CD4-positive, alpha-beta memory T primary cell treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads

value: primary cell

value: male

value: adult

value: 43 year

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS677HEG at ENCODE; https://www.encodeproject.org/ENCBS677HEG/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: Ba2 from IUA patient 2

city: Nanjing

first: Minmin

last: Song

address: 321 Zhongshan Rd.

country: China

institute: The Affiliated Drum Tower Hospital of Nanjing University Medical School

library_source: transcriptomic

data_processing:
Illumina Casava1.7 software used for basecalling.
To identify differentially expressed circRNAs and miRNAs across samples or groups, the edgeR package (http://www.r-project.org/) was used. We identified circRNAs with a fold change ≥2 and a P value <0.05 in a comparison between samples or groups as significant differentially expressed circRNAs and miRNAs.
Genome_build: GRCh38
Supplementary_files_format_and_content: tab-delimited text files include TPM values for each Sample .

molecule: total RNA

source_name: Endometrium

extract_protocol:
Endometria were removed, flash frozen on dry ice, and RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit (Cat#RS-200-0048) was used with 1 ug of total RNA for the construction of sequencing libraries.
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: tissue

value: endometrium

tag: diagnosis

value: Intrauterine adhesions (IUA)

tag: treatment

value: untreated


title: Mint-ChIP-seq from H9 (ENCLB385SEN)

description:
https://www.encodeproject.org/experiments/ENCSR756IGI/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR756IGI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR931GAK
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB385SEN
fragmentation methods: none

value: cell line

value: WA09 ES cells

value: female

value: Bradley Bernstein, Broad

value: ENCBS713BMM at ENCODE; https://www.encodeproject.org/ENCBS713BMM/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB500KUG)

description:
https://www.encodeproject.org/experiments/ENCSR757ZRC/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 ChIP-seq on CD4-positive, alpha-beta memory T cell male adult (43 years)
experiment encode accession: ENCSR757ZRC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR817QVK
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB500KUG
fragmentation methods: none

source_name: Homo sapiens male adult (43 years) CD4-positive, alpha-beta memory T primary cell

value: CD4-positive, alpha-beta memory T cell

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS050OWF at ENCODE; https://www.encodeproject.org/ENCBS050OWF/


title: Control Mint-ChIP-seq from CD4-positive, alpha-beta T cell (ENCLB611VGC)

description:
https://www.encodeproject.org/experiments/ENCSR774CGN/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on CD4-positive, alpha-beta T cell male adult (20 years)
experiment encode accession: ENCSR774CGN
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB611VGC

value: CD4-positive, alpha-beta T cell

value: primary cell

value: male

value: adult

value: 20 year

value: ENCBS151VTD at ENCODE; https://www.encodeproject.org/ENCBS151VTD/

value: Derived from ENCODE donor ENCDO394DKX; https://www.encodeproject.org/ENCDO394DKX/


title: Mint-ChIP-seq from activated CD8-positive, alpha-beta T cell (ENCLB820DJZ)

description:
https://www.encodeproject.org/experiments/ENCSR765BUP/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq of activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng
experiment encode accession: ENCSR765BUP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR651JZJ
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB820DJZ
fragmentation methods: none

value: 21 year

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS387CPR at ENCODE; https://www.encodeproject.org/ENCBS387CPR/

value: Derived from ENCODE donor ENCDO781BMZ; https://www.encodeproject.org/ENCDO781BMZ/


title: Mint-ChIP-seq from CD4-positive, alpha-beta T cell (ENCLB132GRZ)

description:
https://www.encodeproject.org/experiments/ENCSR757VXV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on CD4-positive, alpha-beta T cell male adult (20 years)
experiment encode accession: ENCSR757VXV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR774CGN
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB132GRZ
fragmentation methods: none


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB982RYP)

description:
https://www.encodeproject.org/experiments/ENCSR757ZRC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on CD4-positive, alpha-beta memory T cell male adult (43 years)
experiment encode accession: ENCSR757ZRC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR817QVK
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB982RYP
fragmentation methods: none

value: 43 year

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta memory T cell (ENCLB200EFX)

description:
https://www.encodeproject.org/experiments/ENCSR640GZL/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR640GZL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR201SEO
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB200EFX
fragmentation methods: none

value: ENCBS677HEG at ENCODE; https://www.encodeproject.org/ENCBS677HEG/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB536KLL)

description:
https://www.encodeproject.org/experiments/ENCSR780GTM/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR780GTM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR546UUS
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB536KLL
fragmentation methods: none

value: CD8+ naive CD3+ CD4- CD8+ CD45RA+ CD45RO-

value: not collected

value: healthy

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS872QPK at ENCODE; https://www.encodeproject.org/ENCBS872QPK/

value: Derived from ENCODE donor ENCDO922TOC; https://www.encodeproject.org/ENCDO922TOC/


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta T cell (ENCLB372RHC)

description:
https://www.encodeproject.org/experiments/ENCSR639PCO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq of activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR639PCO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR674JPB
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB372RHC
fragmentation methods: none

source_name: Homo sapiens male adult (20 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads

value: primary cell

value: male

value: adult

value: 20 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS896OLN at ENCODE; https://www.encodeproject.org/ENCBS896OLN/


title: Mint-ChIP-seq from H9 (ENCLB955PYK)

description:
https://www.encodeproject.org/experiments/ENCSR756IGI/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR756IGI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR931GAK
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB955PYK
fragmentation methods: none

value: cell line

value: WA09 ES cells

value: female

value: embryonic

value: 5 day

value: SESCC

value: ENCBS654ADT at ENCODE; https://www.encodeproject.org/ENCBS654ADT/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta T cell (ENCLB564LXP)

description:
https://www.encodeproject.org/experiments/ENCSR639PCO/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq of activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR639PCO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR674JPB
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB564LXP
fragmentation methods: none

value: Derived from ENCODE donor ENCDO394DKX; https://www.encodeproject.org/ENCDO394DKX/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB742RJC)

description:
https://www.encodeproject.org/experiments/ENCSR741XAE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR741XAE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR426RVC
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB742RJC
fragmentation methods: none

source_name: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T primary cell with multiple sclerosis, preserved by cryopreservation

value: primary cell

value: CD8+ naive CD3+ CD4- CD8+ CD45RA+ CD45RO-

value: not collected

value: multiple sclerosis

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS671UYD at ENCODE; https://www.encodeproject.org/ENCBS671UYD/

value: Derived from ENCODE donor ENCDO157PKH; https://www.encodeproject.org/ENCDO157PKH/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB213RKY)

description:
https://www.encodeproject.org/experiments/ENCSR631VIW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR631VIW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR426RVC
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB213RKY
fragmentation methods: none


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB105DHO)

description:
https://www.encodeproject.org/experiments/ENCSR631VIW/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR631VIW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR426RVC
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB105DHO
fragmentation methods: none


title: Control Mint-ChIP-seq from activated CD8-positive, alpha-beta T cell (ENCLB649DVD)

description:
https://www.encodeproject.org/experiments/ENCSR741YCX/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq of activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR741YCX
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-04-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB649DVD

value: male

value: adult

value: 21 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS458XCC at ENCODE; https://www.encodeproject.org/ENCBS458XCC/

value: Derived from ENCODE donor ENCDO781BMZ; https://www.encodeproject.org/ENCDO781BMZ/


title: Control Mint-ChIP-seq from activated CD8-positive, alpha-beta T cell (ENCLB999HAH)

description:
https://www.encodeproject.org/experiments/ENCSR741YCX/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq of activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR741YCX
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-04-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB999HAH

value: primary cell


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB242LKX)

description:
https://www.encodeproject.org/experiments/ENCSR624HJH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR624HJH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR622ZKD
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB242LKX
fragmentation methods: none

source_name: Homo sapiens CD8-positive, alpha-beta memory T primary cell, preserved by cryopreservation

value: CD8-positive, alpha-beta memory T cell

value: CD8+ memory CD3+ CD4- CD8+ CD45RA- CD45RO+

value: healthy

value: ENCBS235RVH at ENCODE; https://www.encodeproject.org/ENCBS235RVH/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB562DAT)

description:
https://www.encodeproject.org/experiments/ENCSR624HJH/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR624HJH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR622ZKD
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB562DAT
fragmentation methods: none

value: not collected

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler


title: Control Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB811YKA)

description:
https://www.encodeproject.org/experiments/ENCSR622ZKD/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR622ZKD
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB811YKA


title: Control Mint-ChIP-seq from activated CD8-positive, alpha-beta T cell (ENCLB648WDO)

description:
https://www.encodeproject.org/experiments/ENCSR651JZJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq of activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng
experiment encode accession: ENCSR651JZJ
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-04-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB648WDO

value: male

value: adult

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS387CPR at ENCODE; https://www.encodeproject.org/ENCBS387CPR/


title: Control Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB839NAX)

description:
https://www.encodeproject.org/experiments/ENCSR622ZKD/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR622ZKD
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB839NAX


title: Mint-ChIP-seq from H9 (ENCLB385BXH)

description:
https://www.encodeproject.org/experiments/ENCSR756IGI/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR756IGI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR931GAK
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB385BXH
fragmentation methods: none

value: cell line

value: WA09 ES cells

value: female

value: embryonic

value: 5 day

value: SESCC

value: ENCBS713BMM at ENCODE; https://www.encodeproject.org/ENCBS713BMM/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from activated CD8-positive, alpha-beta T cell (ENCLB492TOQ)

description:
https://www.encodeproject.org/experiments/ENCSR733FGY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR733FGY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR651JZJ
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB492TOQ
fragmentation methods: none

value: primary cell

value: 21 year

value: Yijun Ruan, JAX

value: AllCells

value: Derived from ENCODE donor ENCDO781BMZ; https://www.encodeproject.org/ENCDO781BMZ/


title: Mint-ChIP-seq from activated CD8-positive, alpha-beta T cell (ENCLB105PZO)

description:
https://www.encodeproject.org/experiments/ENCSR733FGY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR733FGY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR651JZJ
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB105PZO
fragmentation methods: none

value: male


title: Control Mint-ChIP-seq from astrocyte (ENCLB061TLJ)

description:
https://www.encodeproject.org/experiments/ENCSR731CEI/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human PGP1 derived astrocyte
experiment encode accession: ENCSR731CEI
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB061TLJ

source_name: Homo sapiens male adult (53 years) astrocyte in vitro differentiated cells originated from astrocyte, preserved by cryopreservation

value: astrocyte

value: in vitro differentiated cells

value: PGP1 derived astrocytes

value: adult

value: 53 year

value: Bradley Bernstein, Broad

value: George Church

value: ENCBS534DJA at ENCODE; https://www.encodeproject.org/ENCBS534DJA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta T cell (ENCLB071EGW)

description:
https://www.encodeproject.org/experiments/ENCSR731QQG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR731QQG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR779CPT
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB071EGW
fragmentation methods: none

source_name: Homo sapiens male adult (20 years) activated CD4-positive, alpha-beta T primary cell treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads

value: 20 year

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS736STX at ENCODE; https://www.encodeproject.org/ENCBS736STX/

value: Derived from ENCODE donor ENCDO394DKX; https://www.encodeproject.org/ENCDO394DKX/


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta T cell (ENCLB777AWS)

description:
https://www.encodeproject.org/experiments/ENCSR731VYK/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR731VYK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR674JPB
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB777AWS
fragmentation methods: none

value: primary cell

value: Yijun Ruan, JAX

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS896OLN at ENCODE; https://www.encodeproject.org/ENCBS896OLN/


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB395YFI)

description:
https://www.encodeproject.org/experiments/ENCSR617MNG/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR617MNG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR622ZKD
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB395YFI
fragmentation methods: none

value: CD8-positive, alpha-beta memory T cell

value: CD8+ memory CD3+ CD4- CD8+ CD45RA- CD45RO+

value: not collected

value: healthy

value: unknown

value: David Hafler

value: ENCBS235RVH at ENCODE; https://www.encodeproject.org/ENCBS235RVH/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Mint-ChIP-seq from activated CD8-positive, alpha-beta T cell (ENCLB448OSM)

description:
https://www.encodeproject.org/experiments/ENCSR728KQL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq of activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng
experiment encode accession: ENCSR728KQL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR651JZJ
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB448OSM
fragmentation methods: none

value: male

value: adult

value: 21 year

value: AllCells

value: ENCBS387CPR at ENCODE; https://www.encodeproject.org/ENCBS387CPR/

value: Derived from ENCODE donor ENCDO781BMZ; https://www.encodeproject.org/ENCDO781BMZ/


title: Mint-ChIP-seq from activated CD8-positive, alpha-beta T cell (ENCLB414EHD)

description:
https://www.encodeproject.org/experiments/ENCSR728KQL/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq of activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng
experiment encode accession: ENCSR728KQL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR651JZJ
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB414EHD
fragmentation methods: none

value: primary cell

value: Yijun Ruan, JAX

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;


title: Control ChIP-seq from pancreas (ENCLB399JPT)

description:
https://www.encodeproject.org/experiments/ENCSR618UQQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on pancreas tissue female child (16 years)
experiment encode accession: ENCSR618UQQ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB399JPT
size range: 200-600

source_name: Homo sapiens female child (16 years) pancreas tissue

value: pancreas

value: tissue

value: female

value: child

value: 16 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: DM:no; HTN:no; CAD:no

value: ENCBS022HXP at ENCODE; https://www.encodeproject.org/ENCBS022HXP/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta T cell (ENCLB945NQX)

description:
https://www.encodeproject.org/experiments/ENCSR731QQG/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR731QQG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR779CPT
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB945NQX
fragmentation methods: none

value: male

value: adult

value: 20 year

value: ENCBS736STX at ENCODE; https://www.encodeproject.org/ENCBS736STX/

value: Derived from ENCODE donor ENCDO394DKX; https://www.encodeproject.org/ENCDO394DKX/


title: Control ChIP-seq from pancreas (ENCLB910MBB)

description:
https://www.encodeproject.org/experiments/ENCSR618UQQ/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on pancreas tissue female child (16 years)
experiment encode accession: ENCSR618UQQ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-04-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB910MBB
size range: 200-600


title: Control Mint-ChIP-seq from astrocyte (ENCLB040CPL)

description:
https://www.encodeproject.org/experiments/ENCSR731CEI/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human PGP1 derived astrocyte
experiment encode accession: ENCSR731CEI
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB040CPL

value: astrocyte

value: in vitro differentiated cells

value: PGP1 derived astrocytes

value: 53 year

value: George Church

value: ENCBS534DJA at ENCODE; https://www.encodeproject.org/ENCBS534DJA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta memory T cell (ENCLB649WTK)

description:
https://www.encodeproject.org/experiments/ENCSR723MMA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR723MMA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR176HLK
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB649WTK
fragmentation methods: none

value: primary cell

value: 43 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS514SPI at ENCODE; https://www.encodeproject.org/ENCBS514SPI/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB100VSL)

description:
https://www.encodeproject.org/experiments/ENCSR741XAE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR741XAE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR426RVC
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB100VSL
fragmentation methods: none

value: CD8+ naive CD3+ CD4- CD8+ CD45RA+ CD45RO-

value: not collected

value: multiple sclerosis

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS671UYD at ENCODE; https://www.encodeproject.org/ENCBS671UYD/

value: Derived from ENCODE donor ENCDO157PKH; https://www.encodeproject.org/ENCDO157PKH/


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta memory T cell (ENCLB370ONL)

description:
https://www.encodeproject.org/experiments/ENCSR723MMA/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR723MMA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR176HLK
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB370ONL
fragmentation methods: none

value: male

value: adult


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB569OLS)

description:
https://www.encodeproject.org/experiments/ENCSR613UFD/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR613UFD
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR283LWF
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB569OLS
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500,Illumina NovaSeq 6000

value: CD4-positive, alpha-beta memory T cell

value: primary cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: ENCBS812ZCI at ENCODE; https://www.encodeproject.org/ENCBS812ZCI/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB540IEE)

description:
https://www.encodeproject.org/experiments/ENCSR733LCG/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR733LCG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR034MTZ
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB540IEE
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500,Illumina NovaSeq 6000

value: ENCBS512HTQ at ENCODE; https://www.encodeproject.org/ENCBS512HTQ/


title: Mint-ChIP-seq from immature natural killer cell (ENCLB111HUK)

description:
https://www.encodeproject.org/experiments/ENCSR611YIA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR611YIA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR204YIP
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB111HUK
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500

source_name: Homo sapiens immature natural killer primary cell with multiple sclerosis

value: immature natural killer cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: ENCBS745FCE at ENCODE; https://www.encodeproject.org/ENCBS745FCE/

value: Derived from ENCODE donor ENCDO553CCA; https://www.encodeproject.org/ENCDO553CCA/


title: Mint-ChIP-seq from H9 (ENCLB975TPV)

description:
https://www.encodeproject.org/experiments/ENCSR613OZR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR613OZR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR931GAK
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB975TPV
fragmentation methods: none

value: cell line

value: WA09 ES cells

value: female

value: healthy

value: embryonic

value: 5 day

value: SESCC

value: ENCBS654ADT at ENCODE; https://www.encodeproject.org/ENCBS654ADT/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from H9 (ENCLB363XOC)

description:
https://www.encodeproject.org/experiments/ENCSR613OZR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR613OZR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR931GAK
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB363XOC
fragmentation methods: none

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from H9 (ENCLB083TTY)

description:
https://www.encodeproject.org/experiments/ENCSR613OZR/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR613OZR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR931GAK
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB083TTY
fragmentation methods: none

value: ENCBS713BMM at ENCODE; https://www.encodeproject.org/ENCBS713BMM/


title: Mint-ChIP-seq from immature natural killer cell (ENCLB314ALO)

description:
https://www.encodeproject.org/experiments/ENCSR611YIA/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR611YIA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR204YIP
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB314ALO
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500

value: primary cell

value: not collected

value: multiple sclerosis

value: unknown

value: David Hafler


title: WGS from transverse colon (ENCLB198DXK)

description:
https://www.encodeproject.org/experiments/ENCSR613XEH/
***************
biological replicate number: 1
technical replicate number: 1
description: The library contained in this Experiment corresponds to 10X Genomics Chromium prepared WGS.
experiment encode accession: ENCSR613XEH
assay title: WGS
assembly: GRCh38
encode release date: 2017-08-01
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB198DXK

source_name: Homo sapiens transverse colon tissue male adult (54 years)

value: transverse colon

value: tissue

value: Transverse colon tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.

value: 54 year

value: adult

value: male

value: Thomas Gingeras, CSHL

value: ENCBS668MJW at ENCODE; https://www.encodeproject.org/ENCBS668MJW/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta T cell (ENCLB143SLN)

description:
https://www.encodeproject.org/experiments/ENCSR731VYK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR731VYK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR674JPB
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB143SLN
fragmentation methods: none

value: 20 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS896OLN at ENCODE; https://www.encodeproject.org/ENCBS896OLN/

value: Derived from ENCODE donor ENCDO394DKX; https://www.encodeproject.org/ENCDO394DKX/


title: Mint-ChIP-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB378PLX)

description:
https://www.encodeproject.org/experiments/ENCSR720QRX/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq of activated CD8-positive, alpha-beta T cell male adult (30 years) treated with 10 ng
experiment encode accession: ENCSR720QRX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR466PQY
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB378PLX
fragmentation methods: none

source_name: Homo sapiens male adult (30 years) activated CD8-positive, alpha-beta memory T primary cell treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads

value: primary cell

value: 30 year

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS039WVH at ENCODE; https://www.encodeproject.org/ENCBS039WVH/

value: Derived from ENCODE donor ENCDO166AGR; https://www.encodeproject.org/ENCDO166AGR/


title: Control Mint-ChIP-seq from neural crest cell (ENCLB710CKB)

description:
https://www.encodeproject.org/experiments/ENCSR713YQD/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq of neural crest cell originated from neural crest cell
experiment encode accession: ENCSR713YQD
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-04-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB710CKB

source_name: Homo sapiens female embryo (5 days) neural crest in vitro differentiated cells originated from neural crest cell

value: neural crest cell

value: in vitro differentiated cells

value: WA09 derived neural crest cells

value: female

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein, Broad

value: SESCC

value: ENCBS200JOD at ENCODE; https://www.encodeproject.org/ENCBS200JOD/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Control Mint-ChIP-seq from neural crest cell (ENCLB531UMD)

description:
https://www.encodeproject.org/experiments/ENCSR713YQD/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq of neural crest cell originated from neural crest cell
experiment encode accession: ENCSR713YQD
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-04-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB531UMD


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB643VDC)

description:
https://www.encodeproject.org/experiments/ENCSR617MNG/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR617MNG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR622ZKD
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB643VDC
fragmentation methods: none

value: CD8-positive, alpha-beta memory T cell

value: CD8+ memory CD3+ CD4- CD8+ CD45RA- CD45RO+

value: not collected

value: unknown

value: David Hafler

value: ENCBS235RVH at ENCODE; https://www.encodeproject.org/ENCBS235RVH/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Mint-ChIP-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB819XEN)

description:
https://www.encodeproject.org/experiments/ENCSR720QRX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq of activated CD8-positive, alpha-beta T cell male adult (30 years) treated with 10 ng
experiment encode accession: ENCSR720QRX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR466PQY
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB819XEN
fragmentation methods: none

value: primary cell

value: male

value: adult

value: 30 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS039WVH at ENCODE; https://www.encodeproject.org/ENCBS039WVH/

value: Derived from ENCODE donor ENCDO166AGR; https://www.encodeproject.org/ENCDO166AGR/


title: Mint-ChIP-seq from T-cell (ENCLB598CBZ)

description:
https://www.encodeproject.org/experiments/ENCSR713MNC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on T-cell male adult (38 years)
experiment encode accession: ENCSR713MNC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR203XDG
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB598CBZ
fragmentation methods: none

source_name: Homo sapiens male adult (38 years) T-cell primary cell

value: T-cell

value: CD3+ unactivated cells from Stam Lab at Altius.

value: 38 year

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: ENCBS059XUY at ENCODE; https://www.encodeproject.org/ENCBS059XUY/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCLB707QYQ)

description:
https://www.encodeproject.org/experiments/ENCSR709GBY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq of CD8-positive naive resting alpha-beta T cell male adult (30 years)
experiment encode accession: ENCSR709GBY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR761HQT
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB707QYQ
fragmentation methods: none

source_name: Homo sapiens male adult (30 years) CD8-positive naive resting alpha-beta T primary cell

value: ENCBS845PJM at ENCODE; https://www.encodeproject.org/ENCBS845PJM/


title: Mint-ChIP-seq from activated CD8-positive, alpha-beta T cell (ENCLB670ENB)

description:
https://www.encodeproject.org/experiments/ENCSR711KXS/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR711KXS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR651JZJ
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB670ENB
fragmentation methods: none

source_name: Homo sapiens male adult (21 years) activated CD8-positive, alpha-beta T primary cell treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads

value: primary cell

value: 21 year

value: ENCBS387CPR at ENCODE; https://www.encodeproject.org/ENCBS387CPR/

value: Derived from ENCODE donor ENCDO781BMZ; https://www.encodeproject.org/ENCDO781BMZ/


title: Mint-ChIP-seq from CD4-positive, alpha-beta T cell (ENCLB632SEC)

description:
https://www.encodeproject.org/experiments/ENCSR712YCY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on CD4-positive, alpha-beta T cell male adult (20 years)
experiment encode accession: ENCSR712YCY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR774CGN
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB632SEC
fragmentation methods: none

source_name: Homo sapiens male adult (20 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: male

value: adult

value: 20 year

value: Yijun Ruan, JAX

value: ENCBS151VTD at ENCODE; https://www.encodeproject.org/ENCBS151VTD/

value: Derived from ENCODE donor ENCDO394DKX; https://www.encodeproject.org/ENCDO394DKX/


title: Mint-ChIP-seq from activated CD8-positive, alpha-beta T cell (ENCLB265UOT)

description:
https://www.encodeproject.org/experiments/ENCSR711KXS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR711KXS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR651JZJ
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB265UOT
fragmentation methods: none

value: AllCells

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;


title: Mint-ChIP-seq from neural crest cell (ENCLB172NDB)

description:
https://www.encodeproject.org/experiments/ENCSR700DCY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR700DCY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR713YQD
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB172NDB

value: neural crest cell

value: in vitro differentiated cells

value: WA09 derived neural crest cells

value: female

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein, Broad

value: SESCC

value: ENCBS417JEU at ENCODE; https://www.encodeproject.org/ENCBS417JEU/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from neural crest cell (ENCLB620CBJ)

description:
https://www.encodeproject.org/experiments/ENCSR700DCY/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR700DCY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR713YQD
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB620CBJ


title: Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCLB052FIK)

description:
https://www.encodeproject.org/experiments/ENCSR709GBY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq of CD8-positive naive resting alpha-beta T cell male adult (30 years)
experiment encode accession: ENCSR709GBY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR761HQT
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB052FIK
fragmentation methods: none

value: primary cell

value: male

value: adult

value: 30 year

value: ENCBS845PJM at ENCODE; https://www.encodeproject.org/ENCBS845PJM/

value: Derived from ENCODE donor ENCDO166AGR; https://www.encodeproject.org/ENCDO166AGR/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB282LMR)

description:
https://www.encodeproject.org/experiments/ENCSR613UFD/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR613UFD
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR283LWF
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB282LMR
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina NovaSeq 6000,Illumina HiSeq 2500

source_name: Homo sapiens CD4-positive, alpha-beta memory T primary cell with multiple sclerosis, preserved by cryopreservation

value: CD4-positive, alpha-beta memory T cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: not collected

value: multiple sclerosis

value: unknown

value: David Hafler

value: ENCBS812ZCI at ENCODE; https://www.encodeproject.org/ENCBS812ZCI/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: Mint-ChIP-seq from neural crest cell (ENCLB656YRQ)

description:
https://www.encodeproject.org/experiments/ENCSR700DCY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR700DCY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR713YQD
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB656YRQ
fragmentation methods: none

value: neural crest cell

value: in vitro differentiated cells

value: WA09 derived neural crest cells

value: female

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein, Broad

value: SESCC

value: ENCBS200JOD at ENCODE; https://www.encodeproject.org/ENCBS200JOD/


title: Mint-ChIP-seq from activated T-cell (ENCLB476BAF)

description:
https://www.encodeproject.org/experiments/ENCSR600VXO/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 ChIP-seq on activated T-cell male adult (38 years)
experiment encode accession: ENCSR600VXO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR897COL
encode release date: 2020-09-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB476BAF
fragmentation methods: none

source_name: Homo sapiens male adult (38 years) activated T-cell primary cell

value: activated T-cell

value: primary cell

value: Activated with 1:1 ratio of CD3, CD28 beads for 24 hours by Stam lab at Altius.

value: male

value: adult

value: 38 year

value: John Stamatoyannopoulos

value: ENCBS693BEC at ENCODE; https://www.encodeproject.org/ENCBS693BEC/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: Mint-ChIP-seq from activated T-cell (ENCLB502MDO)

description:
https://www.encodeproject.org/experiments/ENCSR600VXO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on activated T-cell male adult (38 years)
experiment encode accession: ENCSR600VXO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR897COL
encode release date: 2020-09-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB502MDO
fragmentation methods: none

value: ENCBS833ENP at ENCODE; https://www.encodeproject.org/ENCBS833ENP/


title: Mint-ChIP-seq from neural crest cell (ENCLB742SEE)

description:
https://www.encodeproject.org/experiments/ENCSR700DCY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR700DCY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR713YQD
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB742SEE
fragmentation methods: none

value: neural crest cell

value: in vitro differentiated cells

value: WA09 derived neural crest cells

value: female

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from CD4-positive, alpha-beta T cell (ENCLB322OZS)

description:
https://www.encodeproject.org/experiments/ENCSR712YCY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on CD4-positive, alpha-beta T cell male adult (20 years)
experiment encode accession: ENCSR712YCY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR774CGN
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB322OZS
fragmentation methods: none

value: CD4-positive, alpha-beta T cell

value: 20 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS151VTD at ENCODE; https://www.encodeproject.org/ENCBS151VTD/

value: Derived from ENCODE donor ENCDO394DKX; https://www.encodeproject.org/ENCDO394DKX/


title: Mint-ChIP-seq from activated T-cell (ENCLB033TIL)

description:
https://www.encodeproject.org/experiments/ENCSR600VXO/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 ChIP-seq on activated T-cell male adult (38 years)
experiment encode accession: ENCSR600VXO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR897COL
encode release date: 2020-09-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB033TIL
fragmentation methods: none

value: activated T-cell

value: primary cell

value: Activated with 1:1 ratio of CD3, CD28 beads for 24 hours by Stam lab at Altius.

value: male

value: adult

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from activated T-cell (ENCLB091IIR)

description:
https://www.encodeproject.org/experiments/ENCSR600VXO/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K36me3 ChIP-seq on activated T-cell male adult (38 years)
experiment encode accession: ENCSR600VXO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR897COL
encode release date: 2020-09-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB091IIR
fragmentation methods: none

value: 38 year

value: John Stamatoyannopoulos

value: ENCBS693BEC at ENCODE; https://www.encodeproject.org/ENCBS693BEC/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: Mint-ChIP-seq from astrocyte (ENCLB451EGR)

description:
https://www.encodeproject.org/experiments/ENCSR592ZWO/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on human PGP1 derived astrocyte
experiment encode accession: ENCSR592ZWO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR731CEI
encode release date: 2021-05-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB451EGR
fragmentation methods: none

value: astrocyte

value: in vitro differentiated cells

value: PGP1 derived astrocytes

value: 53 year

value: George Church

value: ENCBS534DJA at ENCODE; https://www.encodeproject.org/ENCBS534DJA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB028XNT)

description:
https://www.encodeproject.org/experiments/ENCSR594BWH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR594BWH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR688UBO
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB028XNT
fragmentation methods: none

source_name: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T primary cell, preserved by cryopreservation

value: CD4+ naive CD3+ CD4+ CD8- CD45RA+ CD45RO- nonTreg

value: not collected

value: healthy

value: unknown

value: David Hafler

value: ENCBS677DRS at ENCODE; https://www.encodeproject.org/ENCBS677DRS/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB858AXZ)

description:
https://www.encodeproject.org/experiments/ENCSR594BWH/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR594BWH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR688UBO
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB858AXZ
fragmentation methods: none

value: primary cell

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta memory T cell (ENCLB037ZNA)

description:
https://www.encodeproject.org/experiments/ENCSR595ROI/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq of activated CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng
experiment encode accession: ENCSR595ROI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR201SEO
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB037ZNA
fragmentation methods: none

source_name: Homo sapiens male adult (43 years) activated CD4-positive, alpha-beta memory T primary cell treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads

value: male

value: adult

value: 43 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS677HEG at ENCODE; https://www.encodeproject.org/ENCBS677HEG/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta memory T cell (ENCLB796ILQ)

description:
https://www.encodeproject.org/experiments/ENCSR595ROI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq of activated CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng
experiment encode accession: ENCSR595ROI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR201SEO
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB796ILQ
fragmentation methods: none


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB124IXE)

description:
https://www.encodeproject.org/experiments/ENCSR592EKF/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq of CD4-positive, alpha-beta memory T cell originated from CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR592EKF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR131SAQ
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB124IXE
fragmentation methods: none

value: CD4-positive, alpha-beta memory T cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: multiple sclerosis

value: ENCBS702KJW at ENCODE; https://www.encodeproject.org/ENCBS702KJW/

value: Derived from ENCODE donor ENCDO157PKH; https://www.encodeproject.org/ENCDO157PKH/


title: Mint-ChIP-seq from T-cell (ENCLB012CVI)

description:
https://www.encodeproject.org/experiments/ENCSR713MNC/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on T-cell male adult (38 years)
experiment encode accession: ENCSR713MNC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR203XDG
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB012CVI
fragmentation methods: none

value: T-cell

value: CD3+ unactivated cells from Stam Lab at Altius.

value: 38 year

value: John Stamatoyannopoulos

value: ENCBS059XUY at ENCODE; https://www.encodeproject.org/ENCBS059XUY/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: Mint-ChIP-seq from activated B cell (ENCLB666GBQ)

description:
https://www.encodeproject.org/experiments/ENCSR589LHR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on B cell male adult (22 years)
experiment encode accession: ENCSR589LHR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR784EZW
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB666GBQ
fragmentation methods: none

source_name: Homo sapiens male adult (22 years) activated B primary cell treated with 0.5 uM CpG ODN for 24 hours

value: activated B cell

value: primary cell

value: male

value: adult

value: 22 year

value: treatment_term_name:CpG ODN; treatment_type:chemical; duration:24; duration_units:hour;

value: ENCBS860GIC at ENCODE; https://www.encodeproject.org/ENCBS860GIC/

value: Derived from ENCODE donor ENCDO383AQS; https://www.encodeproject.org/ENCDO383AQS/


title: Mint-ChIP-seq from activated B cell (ENCLB201SZB)

description:
https://www.encodeproject.org/experiments/ENCSR589LHR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on B cell male adult (22 years)
experiment encode accession: ENCSR589LHR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR784EZW
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB201SZB
fragmentation methods: none

value: Yijun Ruan, JAX

value: AllCells


title: Mint-ChIP-seq from astrocyte (ENCLB128VVN)

description:
https://www.encodeproject.org/experiments/ENCSR592ZWO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on human PGP1 derived astrocyte
experiment encode accession: ENCSR592ZWO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR731CEI
encode release date: 2021-05-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB128VVN
fragmentation methods: none

value: astrocyte

value: in vitro differentiated cells

value: PGP1 derived astrocytes

value: 53 year

value: Bradley Bernstein, Broad

value: George Church

value: ENCBS534DJA at ENCODE; https://www.encodeproject.org/ENCBS534DJA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Mint-ChIP-seq from CD4-positive, alpha-beta T cell (ENCLB361URG)

description:
https://www.encodeproject.org/experiments/ENCSR396RXX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on CD4-positive, alpha-beta T cell male adult (20 years)
experiment encode accession: ENCSR396RXX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR774CGN
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB361URG
fragmentation methods: none

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 20 year

value: ENCBS151VTD at ENCODE; https://www.encodeproject.org/ENCBS151VTD/

value: Derived from ENCODE donor ENCDO394DKX; https://www.encodeproject.org/ENCDO394DKX/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB233ZBU)

description:
https://www.encodeproject.org/experiments/ENCSR592EKF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq of CD4-positive, alpha-beta memory T cell originated from CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR592EKF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR131SAQ
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB233ZBU
fragmentation methods: none

value: CD4-positive, alpha-beta memory T cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: not collected

value: multiple sclerosis

value: unknown

value: David Hafler

value: ENCBS702KJW at ENCODE; https://www.encodeproject.org/ENCBS702KJW/

value: Derived from ENCODE donor ENCDO157PKH; https://www.encodeproject.org/ENCDO157PKH/


title: Mint-ChIP-seq from CD4-positive, alpha-beta T cell (ENCLB369ZFP)

description:
https://www.encodeproject.org/experiments/ENCSR396RXX/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on CD4-positive, alpha-beta T cell male adult (20 years)
experiment encode accession: ENCSR396RXX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR774CGN
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB369ZFP
fragmentation methods: none

value: male

value: adult

value: Yijun Ruan, JAX

value: AllCells


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB722UXE)

description:
https://www.encodeproject.org/experiments/ENCSR584QLZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR584QLZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR371GOJ
encode release date: 2020-09-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB722UXE
fragmentation methods: none

source_name: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T primary cell, preserved by cryopreservation

value: CD8+ naive CD3+ CD4- CD8+ CD45RA+ CD45RO-

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS044FCF at ENCODE; https://www.encodeproject.org/ENCBS044FCF/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Mint-ChIP-seq from H9 (ENCLB447JUR)

description:
https://www.encodeproject.org/experiments/ENCSR613OZR/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human H9
experiment encode accession: ENCSR613OZR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR931GAK
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB447JUR
fragmentation methods: none

source_name: Homo sapiens H9 cell line originated from H9

value: cell line

value: WA09 ES cells

value: female

value: embryonic

value: 5 day

value: SESCC

value: ENCBS713BMM at ENCODE; https://www.encodeproject.org/ENCBS713BMM/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB340JZY)

description:
https://www.encodeproject.org/experiments/ENCSR584QLZ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR584QLZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR371GOJ
encode release date: 2020-09-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB340JZY
fragmentation methods: none

value: primary cell

value: not collected

value: unknown

value: David Hafler


title: Mint-ChIP-seq from B cell (ENCLB150GOD)

description:
https://www.encodeproject.org/experiments/ENCSR390ZNC/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR390ZNC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR051DHR
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB150GOD
fragmentation methods: none

source_name: Homo sapiens male adult (22 years) B primary cell

value: B cell

value: male

value: adult

value: 22 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS852RUN at ENCODE; https://www.encodeproject.org/ENCBS852RUN/

value: Derived from ENCODE donor ENCDO383AQS; https://www.encodeproject.org/ENCDO383AQS/


title: Mint-ChIP-seq from activated B cell (ENCLB643LHO)

description:
https://www.encodeproject.org/experiments/ENCSR582AGX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on B cell male adult (22 years)
experiment encode accession: ENCSR582AGX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR784EZW
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB643LHO
fragmentation methods: none

value: activated B cell

value: treatment_term_name:CpG ODN; treatment_type:chemical; duration:24; duration_units:hour;

value: ENCBS860GIC at ENCODE; https://www.encodeproject.org/ENCBS860GIC/


title: Mint-ChIP-seq from activated B cell (ENCLB515LQT)

description:
https://www.encodeproject.org/experiments/ENCSR582AGX/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 ChIP-seq on B cell male adult (22 years)
experiment encode accession: ENCSR582AGX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR784EZW
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB515LQT
fragmentation methods: none


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB355NKK)

description:
https://www.encodeproject.org/experiments/ENCSR581FRZ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human CD4-positive, CD25-positive, alpha-beta regulatory T cell
experiment encode accession: ENCSR581FRZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR156VQN
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB355NKK
fragmentation methods: none

source_name: Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T primary cell, preserved by cryopreservation

value: Treg CD3+ CD4+ CD8- CD25+ CD127-

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS681GZX at ENCODE; https://www.encodeproject.org/ENCBS681GZX/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB959ITQ)

description:
https://www.encodeproject.org/experiments/ENCSR385BOZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq of naive thymus-derived CD8-positive, alpha-beta T cell originated from naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR385BOZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR426RVC
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB959ITQ
fragmentation methods: none

source_name: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T primary cell with multiple sclerosis, preserved by cryopreservation

value: primary cell

value: CD8+ naive CD3+ CD4- CD8+ CD45RA+ CD45RO-

value: not collected

value: multiple sclerosis

value: unknown

value: David Hafler

value: ENCBS671UYD at ENCODE; https://www.encodeproject.org/ENCBS671UYD/

value: Derived from ENCODE donor ENCDO157PKH; https://www.encodeproject.org/ENCDO157PKH/


title: gtaI_r2_hr24

city: Houston

first: Gad

last: Shaulsky

state: TX

address: One Baylor Plaza

department: Molecular and Human Genetics

institute: Baylor College of Medicine

description:
GSM3767626
GEO: GSE131209
gtaI_bio2_hr24: gtaI_development 24h : replicate 2
gtaI_r2_hr24

data_processing:
After demultiplexing and filtering illumina adapter sequences, the data was mapped to the D. discoideum genome with bowtie version 1.0.0 through the web application dictyExpress GenBoard or Genialis platform. Read qualities were used. Other parameters: seed length = 28, allowed mismatches = 2, allowed up to 1 alignment per read, with bowtie options -a, --strata, --best. Unmapped reads were trimmed from 3' by 2 nucleotides, which was repeated 5 times.
Raw expression values were computed as the number of reads that were uniquely mapped to gene exons.
Normalized expression were scaled with mappable exon lengths. This normalization is similar to the RPKM normalization (Reads Per Kilobase of exon per Megabase of library size), but instead of dividing by exon lengths we used the uniquely mappable parts of the exon. To obtain uniquely mappable parts, all possible subsequences of the reference genome (of the same length as reads in raw data) are mapped back to the reference genome, obtaining the number of uniquely mapped sequences to the exons (Exon_mappable). As a library size we used the total number of all uniquely mapped reads from the experiment, excluding the non-polyadenylated genes (N_unique). Normalized expressions were computed as follows: Exp = 10^9*raw/(N_unique * Exon_mappable).
Genome_build: D. discoideum Chromosomal DNA: 1,2,3,4,5,6,M, and floating contigs (created: 05-13-2009 13:53) from the DictyBase (chromosomes 1,2,3,4,5,6 and mitochondrial DNA are the same as on NCBI assembly "dicty_2.7"). Regions [3016085, 3768655] from chr2, [64985, 72996] from chrBF and [42801, 78150] from chrR were masked.
Supplementary_files_format_and_content: Processed data files are tab-separated files with two columns: the first containing gene names and the second its expression. Files ending with "_rc.tab" contain raw expression values while files ending with "_nor.tab" contain normalized expression values.

molecule: polyA RNA

organism: Dictyostelium discoideum

source_name: gtaI–

growth_protocol: Dictyostelium discoideum cells were grown in nutrient media (HL-5)

extract_protocol: At each time point, we harvested the cells directly into 1 mL of Trizol® (life technologies, CA, USA) and extracted total RNA according to the manufacturer’s recommended protocol. We performed two rounds of poly-A selection and fragmented 100 ng of the resulting mRNA into approximately 200 bases fragments. We prepared cDNA and the second strand.

treatment_protocol: Cells were washed with PDF and plated on nitrocellulse filter on filter paper saturated in PDF at 1.8x106 cells/cm2.

tag: strain

value: gtaI-

tag: phenotype group

value: culmination defective

tag: replicate

tag: developmental time


title: Mint-ChIP-seq from CD4-positive naive resting alpha-beta T cell (ENCLB169VSF)

description:
https://www.encodeproject.org/experiments/ENCSR384AIT/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on CD4-positive naive resting alpha-beta T cell male adult (43 years)
experiment encode accession: ENCSR384AIT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR692OOM
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB169VSF
fragmentation methods: none

source_name: Homo sapiens male adult (43 years) CD4-positive naive resting alpha-beta T primary cell

tag: antibody

tag: biosample encode accession

tag: Sex

value: male

value: adult

value: 43 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS527XSO at ENCODE; https://www.encodeproject.org/ENCBS527XSO/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB017HKT)

description:
https://www.encodeproject.org/experiments/ENCSR385BOZ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq of naive thymus-derived CD8-positive, alpha-beta T cell originated from naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR385BOZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR426RVC
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB017HKT
fragmentation methods: none

value: primary cell

tag: dev stage

tag: age

tag: lab

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta T cell (ENCLB647BBR)

description:
https://www.encodeproject.org/experiments/ENCSR487INP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR487INP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR674JPB
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB647BBR
fragmentation methods: none

source_name: Homo sapiens male adult (20 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads

value: 20 year

tag: source

tag: treatments

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

tag: link

value: ENCBS896OLN at ENCODE; https://www.encodeproject.org/ENCBS896OLN/

value: Derived from ENCODE donor ENCDO394DKX; https://www.encodeproject.org/ENCDO394DKX/


title: gtaI_r2_hr20

description:
GSM3767625
GEO: GSE131209
gtaI_bio2_hr20: gtaI_development 20h : replicate 2
gtaI_r2_hr20


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB527DKK)

description:
https://www.encodeproject.org/experiments/ENCSR581FRZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human CD4-positive, CD25-positive, alpha-beta regulatory T cell
experiment encode accession: ENCSR581FRZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR156VQN
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB527DKK
fragmentation methods: none

tag: description

value: Treg CD3+ CD4+ CD8- CD25+ CD127-

value: not collected

tag: health state

value: healthy

value: unknown

value: David Hafler

value: ENCBS681GZX at ENCODE; https://www.encodeproject.org/ENCBS681GZX/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB913YMF)

description:
https://www.encodeproject.org/experiments/ENCSR486XJK/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR486XJK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR283LWF
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB913YMF
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina NovaSeq 6000,Illumina HiSeq 2500

value: CD4-positive, alpha-beta memory T cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: multiple sclerosis

value: ENCBS812ZCI at ENCODE; https://www.encodeproject.org/ENCBS812ZCI/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: gtaI_r2_hr16

description:
GSM3767624
GEO: GSE131209
gtaI_bio2_hr16: gtaI_development 16h : replicate 2
gtaI_r2_hr16

value: gtaI-

value: culmination defective


title: Mint-ChIP-seq from CD4-positive naive resting alpha-beta T cell (ENCLB720VFR)

description:
https://www.encodeproject.org/experiments/ENCSR384AIT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on CD4-positive naive resting alpha-beta T cell male adult (43 years)
experiment encode accession: ENCSR384AIT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR692OOM
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB720VFR
fragmentation methods: none

value: primary cell

value: male

value: adult

value: 43 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS527XSO at ENCODE; https://www.encodeproject.org/ENCBS527XSO/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta T cell (ENCLB469BNV)

description:
https://www.encodeproject.org/experiments/ENCSR487INP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR487INP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR674JPB
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB469BNV
fragmentation methods: none

value: 20 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS896OLN at ENCODE; https://www.encodeproject.org/ENCBS896OLN/

value: Derived from ENCODE donor ENCDO394DKX; https://www.encodeproject.org/ENCDO394DKX/


title: gtaI_r2_hr12

description:
GSM3767623
GEO: GSE131209
gtaI_bio2_hr12: gtaI_development 12h : replicate 2
gtaI_r2_hr12


title: gtaI_r2_hr08

description:
GSM3767622
GEO: GSE131209
gtaI_bio2_hr08: gtaI_development 8h : replicate 2
gtaI_r2_hr08


title: gtaI_r2_hr04

description:
GSM3767621
GEO: GSE131209
gtaI_bio2_hr04: gtaI_development 4h : replicate 2
gtaI_r2_hr04


title: gtaI_r2_hr00

description:
GSM3767620
GEO: GSE131209
gtaI_bio2_hr00: gtaI_development 0h : replicate 2
gtaI_r2_hr00


title: gtaI_r1_hr24

description:
GSM3767619
GEO: GSE131209
gtaI_bio1_hr24: gtaI_development 24h : replicate 1
gtaI_r1_hr24


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB918NSI)

description:
https://www.encodeproject.org/experiments/ENCSR733LCG/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR733LCG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR034MTZ
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB918NSI
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500,Illumina NovaSeq 6000

value: CD8+ naive CD3+ CD4- CD8+ CD45RA+ CD45RO-

value: not collected

value: multiple sclerosis

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS512HTQ at ENCODE; https://www.encodeproject.org/ENCBS512HTQ/


title: gtaI_r1_hr20

description:
GSM3767618
GEO: GSE131209
gtaI_bio1_hr20: gtaI_development 20h : replicate 1
gtaI_r1_hr20

value: gtaI-

value: culmination defective


title: Mint-ChIP-seq from B cell (ENCLB511PJC)

description:
https://www.encodeproject.org/experiments/ENCSR390ZNC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR390ZNC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR051DHR
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB511PJC
fragmentation methods: none

value: B cell

value: primary cell

value: male

value: adult

value: 22 year

value: Yijun Ruan, JAX

value: ENCBS852RUN at ENCODE; https://www.encodeproject.org/ENCBS852RUN/

value: Derived from ENCODE donor ENCDO383AQS; https://www.encodeproject.org/ENCDO383AQS/


title: gtaI_r1_hr16

description:
GSM3767617
GEO: GSE131209
gtaI_bio1_hr16: gtaI_development 16h : replicate 1
gtaI_r1_hr16