title: Control Mint-ChIP-seq from naive B cell (ENCLB731INS)

description:
https://www.encodeproject.org/experiments/ENCSR707UVZ/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human naive B cell
experiment encode accession: ENCSR707UVZ
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB731INS


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB088BSB)

status: Public on Jun 15 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR705VSO/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR705VSO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR344TLH
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB088BSB
fragmentation methods: none

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T primary cell with multiple sclerosis, preserved by cryopreservation

tag: antibody

value: primary cell

tag: description

value: CD4+ naive CD3+ CD4+ CD8- CD45RA+ CD45RO- nonTreg

tag: biosample encode accession

tag: Sex

value: not collected

tag: health state

value: multiple sclerosis

tag: dev stage

value: unknown

tag: age

tag: lab

value: Bradley Bernstein, Broad

tag: source

value: David Hafler

tag: link

value: ENCBS321BAK at ENCODE; https://www.encodeproject.org/ENCBS321BAK/

value: Derived from ENCODE donor ENCDO157PKH; https://www.encodeproject.org/ENCDO157PKH/


title: Mint-ChIP-seq from immature natural killer cell (ENCLB916BCD)

description:
https://www.encodeproject.org/experiments/ENCSR703TWY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR703TWY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR731LOB
encode release date: 2020-09-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB916BCD
fragmentation methods: none

source_name: Homo sapiens immature natural killer primary cell with multiple sclerosis

value: immature natural killer cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: ENCBS255ELL at ENCODE; https://www.encodeproject.org/ENCBS255ELL/


title: Mint-ChIP-seq from immature natural killer cell (ENCLB297TBJ)

description:
https://www.encodeproject.org/experiments/ENCSR703TWY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR703TWY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR731LOB
encode release date: 2020-09-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB297TBJ
fragmentation methods: none


title: Control Mint-ChIP-seq from nephron (ENCLB695UHA)

description:
https://www.encodeproject.org/experiments/ENCSR397RWM/
***************
biological replicate number: 2
technical replicate number: 1
description: Control Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR397RWM
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB695UHA

source_name: Homo sapiens female embryo (5 days) nephron organoid originated from H9, 21 days post differentiation

value: nephron

value: organoid

value: derived from H9 nephron progenitor cells (NPCs) harvested at day 21

value: female

value: healthy

value: embryonic

value: 5 day

value: Joseph Bonventre

value: ENCBS378CGA at ENCODE; https://www.encodeproject.org/ENCBS378CGA/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Control Mint-ChIP-seq from nephron (ENCLB443ABQ)

description:
https://www.encodeproject.org/experiments/ENCSR397RWM/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR397RWM
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB443ABQ

source_name: Homo sapiens female embryo (5 days) nephron organoid originated from H9, preserved by cryopreservation

value: H9 derived nephron organoid 21 days

value: Bradley Bernstein, Broad

value: ENCBS202RGJ at ENCODE; https://www.encodeproject.org/ENCBS202RGJ/


title: Control Mint-ChIP-seq from nephron (ENCLB535LCR)

description:
https://www.encodeproject.org/experiments/ENCSR397RWM/
***************
biological replicate number: 2
technical replicate number: 2
description: Control Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR397RWM
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB535LCR


title: Control Mint-ChIP-seq from brain (ENCLB371QBE)

description:
https://www.encodeproject.org/experiments/ENCSR389BJR/
***************
biological replicate number: 3
technical replicate number: 2
description: Control Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR389BJR
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB371QBE

source_name: Homo sapiens female embryo (5 days) brain organoid, 180 days post differentiation

value: brain

value: Paola Arlotta

value: ENCBS598CLB at ENCODE; https://www.encodeproject.org/ENCBS598CLB/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB735HDT)

description:
https://www.encodeproject.org/experiments/ENCSR391OPI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR391OPI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR570TYL
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB735HDT
fragmentation methods: none

source_name: Homo sapiens CD4-positive, alpha-beta memory T primary cell, preserved by cryopreservation

value: CD4-positive, alpha-beta memory T cell

value: primary cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: not collected

value: unknown

value: David Hafler

value: ENCBS300QBR at ENCODE; https://www.encodeproject.org/ENCBS300QBR/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: Mint-ChIP-seq from immature natural killer cell (ENCLB316PFE)

description:
https://www.encodeproject.org/experiments/ENCSR394JFQ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR394JFQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR242ARJ
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB316PFE
fragmentation methods: none

source_name: Homo sapiens immature natural killer primary cell

value: immature natural killer cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: healthy

value: ENCBS142IVK at ENCODE; https://www.encodeproject.org/ENCBS142IVK/


title: Control Mint-ChIP-seq from brain (ENCLB745CAF)

description:
https://www.encodeproject.org/experiments/ENCSR389BJR/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR389BJR
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB745CAF

value: organoid

value: female

value: embryonic

value: 5 day

value: Bradley Bernstein, Broad

value: ENCBS615FKW at ENCODE; https://www.encodeproject.org/ENCBS615FKW/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Control Mint-ChIP-seq from brain (ENCLB948IXO)

description:
https://www.encodeproject.org/experiments/ENCSR389BJR/
***************
biological replicate number: 2
technical replicate number: 1
description: Control Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR389BJR
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB948IXO

value: brain

value: Paola Arlotta

value: ENCBS358VQQ at ENCODE; https://www.encodeproject.org/ENCBS358VQQ/


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB466AWP)

description:
https://www.encodeproject.org/experiments/ENCSR387MFU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR387MFU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR749PSE
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB466AWP
fragmentation methods: none

source_name: Homo sapiens CD8-positive, alpha-beta memory T primary cell

value: CD8-positive, alpha-beta memory T cell

value: primary cell

value: not collected

value: unknown

value: David Hafler

value: ENCBS020LPJ at ENCODE; https://www.encodeproject.org/ENCBS020LPJ/


title: Control Mint-ChIP-seq from brain (ENCLB894VGE)

description:
https://www.encodeproject.org/experiments/ENCSR389BJR/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR389BJR
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB894VGE

value: healthy


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB576AAN)

description:
https://www.encodeproject.org/experiments/ENCSR386IID/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR386IID
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR958CUX
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB576AAN
fragmentation methods: none

source_name: Homo sapiens CD14-positive monocyte primary cell with multiple sclerosis, preserved by cryopreservation

value: CD14-positive monocyte

value: Monocyte CD3- CD14+ CD19-

value: multiple sclerosis

value: ENCBS929PLQ at ENCODE; https://www.encodeproject.org/ENCBS929PLQ/

value: Derived from ENCODE donor ENCDO553CCA; https://www.encodeproject.org/ENCDO553CCA/


title: Control Mint-ChIP-seq from naive B cell (ENCLB966URH)

description:
https://www.encodeproject.org/experiments/ENCSR499CKV/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human naive B cell
experiment encode accession: ENCSR499CKV
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB966URH
instrument models: Illumina HiSeq 2500,Illumina NovaSeq 6000

source_name: Homo sapiens naive B primary cell, preserved by cryopreservation

value: naive B cell

value: B naive CD3- CD14- CD19+ CD27- IgD+

value: Bradley Bernstein, Broad

value: ENCBS644KFM at ENCODE; https://www.encodeproject.org/ENCBS644KFM/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB298XVI)

description:
https://www.encodeproject.org/experiments/ENCSR386IID/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR386IID
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR958CUX
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB298XVI
fragmentation methods: none


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB980QSO)

description:
https://www.encodeproject.org/experiments/ENCSR705VSO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR705VSO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR344TLH
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB980QSO
fragmentation methods: none

value: CD4+ naive CD3+ CD4+ CD8- CD45RA+ CD45RO- nonTreg

value: ENCBS321BAK at ENCODE; https://www.encodeproject.org/ENCBS321BAK/

value: Derived from ENCODE donor ENCDO157PKH; https://www.encodeproject.org/ENCDO157PKH/


title: Control Mint-ChIP-seq from nephron (ENCLB800HJC)

description:
https://www.encodeproject.org/experiments/ENCSR397RWM/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR397RWM
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB800HJC

value: nephron

value: organoid

value: H9 derived nephron organoid 21 days

value: female

value: embryonic

value: 5 day

value: Joseph Bonventre

value: ENCBS202RGJ at ENCODE; https://www.encodeproject.org/ENCBS202RGJ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB849FOZ)

description:
https://www.encodeproject.org/experiments/ENCSR489UWQ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR489UWQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR887UYJ
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB849FOZ
fragmentation methods: none

value: CD4-positive, alpha-beta memory T cell

value: primary cell

value: CD4+ memory cells from healthy donor

value: not collected

value: healthy

value: unknown

value: David Hafler

value: ENCBS963BXF at ENCODE; https://www.encodeproject.org/ENCBS963BXF/

value: Derived from ENCODE donor ENCDO258PRN; https://www.encodeproject.org/ENCDO258PRN/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB139HLK)

description:
https://www.encodeproject.org/experiments/ENCSR489UWQ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR489UWQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR887UYJ
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB139HLK
fragmentation methods: none

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from immature natural killer cell (ENCLB957QNS)

description:
https://www.encodeproject.org/experiments/ENCSR722JVU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR722JVU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR242ARJ
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB957QNS
fragmentation methods: none

value: immature natural killer cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: ENCBS142IVK at ENCODE; https://www.encodeproject.org/ENCBS142IVK/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB683LUT)

description:
https://www.encodeproject.org/experiments/ENCSR487WNP/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR487WNP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR086KHK
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB683LUT

source_name: Homo sapiens CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: ENCBS666ANY at ENCODE; https://www.encodeproject.org/ENCBS666ANY/


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB427VCW)

description:
https://www.encodeproject.org/experiments/ENCSR487WNP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR487WNP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR086KHK
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB427VCW


title: Mint-ChIP-seq from brain (ENCLB925KPR)

description:
https://www.encodeproject.org/experiments/ENCSR580KNF/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human PGP1 derived brain organoid
experiment encode accession: ENCSR580KNF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR141MUD
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB925KPR
fragmentation methods: none

source_name: Homo sapiens male adult (53 years) brain organoid, 90 days post differentiation

value: brain

value: organoid

value: brain organoids created by Arlotta lab using new protocol to create more reliable organoids.

value: male

value: adult

value: 53 year

value: Paola Arlotta

value: ENCBS524OMS at ENCODE; https://www.encodeproject.org/ENCBS524OMS/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB839ATX)

description:
https://www.encodeproject.org/experiments/ENCSR391OPI/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR391OPI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR570TYL
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB839ATX
fragmentation methods: none

value: CD4-positive, alpha-beta memory T cell

value: primary cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: not collected

value: healthy

value: unknown

value: David Hafler

value: ENCBS300QBR at ENCODE; https://www.encodeproject.org/ENCBS300QBR/


title: Mint-ChIP-seq from brain (ENCLB648DYN)

description:
https://www.encodeproject.org/experiments/ENCSR580KNF/
***************
biological replicate number: 3
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human PGP1 derived brain organoid
experiment encode accession: ENCSR580KNF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR141MUD
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB648DYN
fragmentation methods: none

value: brain

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from brain (ENCLB325VXM)

description:
https://www.encodeproject.org/experiments/ENCSR580KNF/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human PGP1 derived brain organoid
experiment encode accession: ENCSR580KNF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR141MUD
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB325VXM
fragmentation methods: none

value: organoid

value: brain organoids created by Arlotta lab using new protocol to create more reliable organoids.

value: ENCBS291HMT at ENCODE; https://www.encodeproject.org/ENCBS291HMT/


title: Control Mint-ChIP-seq from brain (ENCLB388BGM)

description:
https://www.encodeproject.org/experiments/ENCSR389BJR/
***************
biological replicate number: 3
technical replicate number: 1
description: Control Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR389BJR
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB388BGM

value: female

value: embryonic

value: 5 day

value: ENCBS598CLB at ENCODE; https://www.encodeproject.org/ENCBS598CLB/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB841API)

description:
https://www.encodeproject.org/experiments/ENCSR387MFU/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR387MFU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR749PSE
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB841API
fragmentation methods: none

value: CD8-positive, alpha-beta memory T cell

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: ENCBS020LPJ at ENCODE; https://www.encodeproject.org/ENCBS020LPJ/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: Mint-ChIP-seq from brain (ENCLB739AAW)

description:
https://www.encodeproject.org/experiments/ENCSR580KNF/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human PGP1 derived brain organoid
experiment encode accession: ENCSR580KNF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR141MUD
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB739AAW
fragmentation methods: none

value: male

value: adult

value: 53 year

value: Paola Arlotta

value: ENCBS377FQM at ENCODE; https://www.encodeproject.org/ENCBS377FQM/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Control Mint-ChIP-seq from brain (ENCLB170CWP)

description:
https://www.encodeproject.org/experiments/ENCSR389BJR/
***************
biological replicate number: 2
technical replicate number: 2
description: Control Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR389BJR
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB170CWP

value: brain

value: organoid

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS358VQQ at ENCODE; https://www.encodeproject.org/ENCBS358VQQ/


title: Mint-ChIP-seq from brain (ENCLB069ZGF)

description:
https://www.encodeproject.org/experiments/ENCSR580KNF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human PGP1 derived brain organoid
experiment encode accession: ENCSR580KNF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR141MUD
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB069ZGF
fragmentation methods: none

value: brain organoids created by Arlotta lab using new protocol to create more reliable organoids.

value: ENCBS291HMT at ENCODE; https://www.encodeproject.org/ENCBS291HMT/


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB631YUR)

description:
https://www.encodeproject.org/experiments/ENCSR485FBT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on CD4-positive, CD25-positive, alpha-beta regulatory T cell
experiment encode accession: ENCSR485FBT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR456XXL
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB631YUR
fragmentation methods: none

source_name: Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T primary cell with multiple sclerosis

value: primary cell

value: not collected

value: multiple sclerosis

value: unknown

value: David Hafler

value: ENCBS269FKR at ENCODE; https://www.encodeproject.org/ENCBS269FKR/

value: Derived from ENCODE donor ENCDO553CCA; https://www.encodeproject.org/ENCDO553CCA/


title: Mint-ChIP-seq from immature natural killer cell (ENCLB118ARV)

description:
https://www.encodeproject.org/experiments/ENCSR482UGV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR482UGV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR731LOB
encode release date: 2020-09-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB118ARV
fragmentation methods: none

value: immature natural killer cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: ENCBS255ELL at ENCODE; https://www.encodeproject.org/ENCBS255ELL/

value: Derived from ENCODE donor ENCDO157PKH; https://www.encodeproject.org/ENCDO157PKH/


title: Mint-ChIP-seq from immature natural killer cell (ENCLB114GOK)

description:
https://www.encodeproject.org/experiments/ENCSR482UGV/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR482UGV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR731LOB
encode release date: 2020-09-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB114GOK
fragmentation methods: none


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB577LXS)

description:
https://www.encodeproject.org/experiments/ENCSR485FBT/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on CD4-positive, CD25-positive, alpha-beta regulatory T cell
experiment encode accession: ENCSR485FBT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR456XXL
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB577LXS
fragmentation methods: none


title: Control Mint-ChIP-seq from naive B cell (ENCLB670XEP)

description:
https://www.encodeproject.org/experiments/ENCSR499CKV/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human naive B cell
experiment encode accession: ENCSR499CKV
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB670XEP
instrument models: Illumina HiSeq 2500,Illumina NovaSeq 6000

value: naive B cell

value: B naive CD3- CD14- CD19+ CD27- IgD+

value: ENCBS644KFM at ENCODE; https://www.encodeproject.org/ENCBS644KFM/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Control Mint-ChIP-seq from brain (ENCLB017IFN)

description:
https://www.encodeproject.org/experiments/ENCSR577JQZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Control Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR577JQZ
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB017IFN

source_name: Homo sapiens female embryo (5 days) brain organoid, 90 days post differentiation

value: brain

value: organoid

value: female

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein, Broad

value: Paola Arlotta

value: ENCBS069IXO at ENCODE; https://www.encodeproject.org/ENCBS069IXO/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Control Mint-ChIP-seq from brain (ENCLB818VOY)

description:
https://www.encodeproject.org/experiments/ENCSR577JQZ/
***************
biological replicate number: 2
technical replicate number: 2
description: Control Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR577JQZ
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB818VOY


title: Control Mint-ChIP-seq from brain (ENCLB890CTX)

description:
https://www.encodeproject.org/experiments/ENCSR577JQZ/
***************
biological replicate number: 3
technical replicate number: 1
description: Control Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR577JQZ
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB890CTX

value: ENCBS277HZS at ENCODE; https://www.encodeproject.org/ENCBS277HZS/


title: Control Mint-ChIP-seq from brain (ENCLB111RZY)

description:
https://www.encodeproject.org/experiments/ENCSR577JQZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR577JQZ
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB111RZY

value: ENCBS140WFQ at ENCODE; https://www.encodeproject.org/ENCBS140WFQ/


title: Control Mint-ChIP-seq from brain (ENCLB138MBR)

description:
https://www.encodeproject.org/experiments/ENCSR577JQZ/
***************
biological replicate number: 3
technical replicate number: 2
description: Control Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR577JQZ
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB138MBR


title: Control Mint-ChIP-seq from brain (ENCLB432OLD)

description:
https://www.encodeproject.org/experiments/ENCSR577JQZ/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR577JQZ
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-07-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB432OLD


title: Mint-ChIP-seq from brain (ENCLB527XSV)

description:
https://www.encodeproject.org/experiments/ENCSR380GYY/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human PGP1 derived brain organoid
experiment encode accession: ENCSR380GYY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR106WDX
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB527XSV
fragmentation methods: none

source_name: Homo sapiens male adult (53 years) brain organoid, 180 days post differentiation

value: brain organoids created by Arlotta lab using new protocol to create more reliable organoids.

value: male

value: adult

value: 53 year

value: ENCBS252LAB at ENCODE; https://www.encodeproject.org/ENCBS252LAB/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Mint-ChIP-seq from brain (ENCLB598EDT)

description:
https://www.encodeproject.org/experiments/ENCSR380GYY/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human PGP1 derived brain organoid
experiment encode accession: ENCSR380GYY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR106WDX
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB598EDT
fragmentation methods: none

value: brain

value: organoid

value: ENCBS412HPI at ENCODE; https://www.encodeproject.org/ENCBS412HPI/


title: Mint-ChIP-seq from brain (ENCLB258CST)

description:
https://www.encodeproject.org/experiments/ENCSR380GYY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human PGP1 derived brain organoid
experiment encode accession: ENCSR380GYY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR106WDX
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB258CST
fragmentation methods: none

value: ENCBS344QAP at ENCODE; https://www.encodeproject.org/ENCBS344QAP/


title: Mint-ChIP-seq from brain (ENCLB734PAT)

description:
https://www.encodeproject.org/experiments/ENCSR580KNF/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human PGP1 derived brain organoid
experiment encode accession: ENCSR580KNF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR141MUD
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB734PAT
fragmentation methods: none

value: ENCBS377FQM at ENCODE; https://www.encodeproject.org/ENCBS377FQM/


title: Mint-ChIP-seq from brain (ENCLB042WIU)

description:
https://www.encodeproject.org/experiments/ENCSR380GYY/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human PGP1 derived brain organoid
experiment encode accession: ENCSR380GYY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR106WDX
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB042WIU
fragmentation methods: none

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from brain (ENCLB043QEC)

description:
https://www.encodeproject.org/experiments/ENCSR380GYY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human PGP1 derived brain organoid
experiment encode accession: ENCSR380GYY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR106WDX
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB043QEC
fragmentation methods: none

value: Paola Arlotta


title: Mint-ChIP-seq from brain (ENCLB200GZK)

description:
https://www.encodeproject.org/experiments/ENCSR380GYY/
***************
biological replicate number: 3
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human PGP1 derived brain organoid
experiment encode accession: ENCSR380GYY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR106WDX
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB200GZK
fragmentation methods: none


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB097PZJ)

description:
https://www.encodeproject.org/experiments/ENCSR572XTB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR572XTB
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR243EIU
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB097PZJ

source_name: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T primary cell with multiple sclerosis

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: multiple sclerosis

value: unknown

value: David Hafler

value: ENCBS771DND at ENCODE; https://www.encodeproject.org/ENCBS771DND/

value: Derived from ENCODE donor ENCDO553CCA; https://www.encodeproject.org/ENCDO553CCA/


title: Mint-ChIP-seq from naive B cell (ENCLB874RXL)

description:
https://www.encodeproject.org/experiments/ENCSR481LRI/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on human naive B cell
experiment encode accession: ENCSR481LRI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR906UGW
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB874RXL

source_name: Homo sapiens naive B primary cell

value: naive B cell

value: healthy

value: ENCBS973SPF at ENCODE; https://www.encodeproject.org/ENCBS973SPF/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: Mint-ChIP-seq from naive B cell (ENCLB741YND)

description:
https://www.encodeproject.org/experiments/ENCSR481LRI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on human naive B cell
experiment encode accession: ENCSR481LRI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR906UGW
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB741YND


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB814XEL)

description:
https://www.encodeproject.org/experiments/ENCSR572XTB/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR572XTB
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR243EIU
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB814XEL


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB733VIP)

description:
https://www.encodeproject.org/experiments/ENCSR476IPR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR476IPR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR128KDZ
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB733VIP
fragmentation methods: none

source_name: Homo sapiens CD8-positive, alpha-beta memory T primary cell with multiple sclerosis

value: CD8-positive, alpha-beta memory T cell

value: ENCBS757PLC at ENCODE; https://www.encodeproject.org/ENCBS757PLC/


title: Control Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB351ZDV)

description:
https://www.encodeproject.org/experiments/ENCSR570TYL/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR570TYL
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB351ZDV

value: CD4-positive, alpha-beta memory T cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: ENCBS300QBR at ENCODE; https://www.encodeproject.org/ENCBS300QBR/


title: Control Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB653NEW)

description:
https://www.encodeproject.org/experiments/ENCSR570TYL/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR570TYL
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB653NEW

value: primary cell

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB423YVH)

description:
https://www.encodeproject.org/experiments/ENCSR474PYR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR474PYR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR128CIX
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB423YVH

source_name: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T primary cell with multiple sclerosis

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: ENCBS040CMJ at ENCODE; https://www.encodeproject.org/ENCBS040CMJ/


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB730HQK)

description:
https://www.encodeproject.org/experiments/ENCSR474PYR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR474PYR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR128CIX
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB730HQK

value: multiple sclerosis

value: unknown

value: David Hafler


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB206HDO)

description:
https://www.encodeproject.org/experiments/ENCSR476IPR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR476IPR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR128KDZ
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB206HDO
fragmentation methods: none

value: Derived from ENCODE donor ENCDO553CCA; https://www.encodeproject.org/ENCDO553CCA/


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB286HFS)

description:
https://www.encodeproject.org/experiments/ENCSR473TGK/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR473TGK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR344TLH
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB286HFS
fragmentation methods: none

source_name: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T primary cell with multiple sclerosis, preserved by cryopreservation

value: CD4+ naive CD3+ CD4+ CD8- CD45RA+ CD45RO- nonTreg

value: ENCBS321BAK at ENCODE; https://www.encodeproject.org/ENCBS321BAK/

value: Derived from ENCODE donor ENCDO157PKH; https://www.encodeproject.org/ENCDO157PKH/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB370TJW)

description:
https://www.encodeproject.org/experiments/ENCSR377QYB/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR377QYB
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR243EIU
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB370TJW

value: ENCBS771DND at ENCODE; https://www.encodeproject.org/ENCBS771DND/


title: Mint-ChIP-seq from brain (ENCLB200PIQ)

description:
https://www.encodeproject.org/experiments/ENCSR564DHY/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR564DHY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR389BJR
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB200PIQ
fragmentation methods: none

value: brain

value: organoid

value: female

value: healthy

value: embryonic

value: 5 day

value: Paola Arlotta

value: ENCBS358VQQ at ENCODE; https://www.encodeproject.org/ENCBS358VQQ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB175IOR)

description:
https://www.encodeproject.org/experiments/ENCSR377QYB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR377QYB
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR243EIU
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB175IOR

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: multiple sclerosis

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from brain (ENCLB866JFZ)

description:
https://www.encodeproject.org/experiments/ENCSR564DHY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR564DHY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR389BJR
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB866JFZ
fragmentation methods: none

value: ENCBS615FKW at ENCODE; https://www.encodeproject.org/ENCBS615FKW/


title: Mint-ChIP-seq from brain (ENCLB447EWK)

description:
https://www.encodeproject.org/experiments/ENCSR564DHY/
***************
biological replicate number: 3
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR564DHY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR389BJR
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB447EWK
fragmentation methods: none

value: ENCBS598CLB at ENCODE; https://www.encodeproject.org/ENCBS598CLB/


title: Mint-ChIP-seq from brain (ENCLB252JAP)

description:
https://www.encodeproject.org/experiments/ENCSR564DHY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR564DHY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR389BJR
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB252JAP
fragmentation methods: none


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB029GKD)

description:
https://www.encodeproject.org/experiments/ENCSR473TGK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR473TGK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR344TLH
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB029GKD
fragmentation methods: none

value: CD4+ naive CD3+ CD4+ CD8- CD45RA+ CD45RO- nonTreg

value: unknown

value: David Hafler

value: ENCBS321BAK at ENCODE; https://www.encodeproject.org/ENCBS321BAK/

value: Derived from ENCODE donor ENCDO157PKH; https://www.encodeproject.org/ENCDO157PKH/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB280FSO)

description:
https://www.encodeproject.org/experiments/ENCSR471WZE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR471WZE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR283LWF
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB280FSO
fragmentation methods: none
instrument models: Illumina HiSeq 2500,Illumina NovaSeq 6000

source_name: Homo sapiens CD4-positive, alpha-beta memory T primary cell with multiple sclerosis, preserved by cryopreservation

value: CD4-positive, alpha-beta memory T cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: ENCBS812ZCI at ENCODE; https://www.encodeproject.org/ENCBS812ZCI/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: Mint-ChIP-seq from brain (ENCLB273JSN)

description:
https://www.encodeproject.org/experiments/ENCSR564DHY/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR564DHY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR389BJR
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB273JSN
fragmentation methods: none

source_name: Homo sapiens female embryo (5 days) brain organoid, 180 days post differentiation

value: brain

value: organoid

value: female

value: healthy

value: embryonic

value: 5 day

value: Paola Arlotta

value: ENCBS358VQQ at ENCODE; https://www.encodeproject.org/ENCBS358VQQ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Control Mint-ChIP-seq from IgD-negative memory B cell (ENCLB768VCT)

description:
https://www.encodeproject.org/experiments/ENCSR469VTN/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human IgD-negative memory B cell
experiment encode accession: ENCSR469VTN
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB768VCT

source_name: Homo sapiens IgD-negative memory B primary cell, preserved by cryopreservation

value: IgD-negative memory B cell

value: primary cell

value: B memory CD3- CD14- CD19+ CD27+ IgD-

value: not collected

value: unknown

value: Bradley Bernstein, Broad

value: ENCBS677QPD at ENCODE; https://www.encodeproject.org/ENCBS677QPD/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: Control Mint-ChIP-seq from IgD-negative memory B cell (ENCLB732BWM)

description:
https://www.encodeproject.org/experiments/ENCSR469VTN/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human IgD-negative memory B cell
experiment encode accession: ENCSR469VTN
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB732BWM

value: David Hafler


title: Mint-ChIP-seq from immature natural killer cell (ENCLB283KQR)

description:
https://www.encodeproject.org/experiments/ENCSR469QVG/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR469QVG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR731LOB
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB283KQR
fragmentation methods: none

source_name: Homo sapiens immature natural killer primary cell with multiple sclerosis

value: immature natural killer cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: multiple sclerosis

value: ENCBS255ELL at ENCODE; https://www.encodeproject.org/ENCBS255ELL/

value: Derived from ENCODE donor ENCDO157PKH; https://www.encodeproject.org/ENCDO157PKH/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB122FXC)

description:
https://www.encodeproject.org/experiments/ENCSR373MTM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR373MTM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR570TYL
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB122FXC
fragmentation methods: none

source_name: Homo sapiens CD4-positive, alpha-beta memory T primary cell, preserved by cryopreservation

value: CD4-positive, alpha-beta memory T cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: healthy

value: ENCBS300QBR at ENCODE; https://www.encodeproject.org/ENCBS300QBR/


title: Mint-ChIP-seq from CD4-positive, alpha-beta memory T cell (ENCLB878FYO)

description:
https://www.encodeproject.org/experiments/ENCSR373MTM/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human CD4-positive, alpha-beta memory T cell
experiment encode accession: ENCSR373MTM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR570TYL
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB878FYO
fragmentation methods: none

value: primary cell


title: Mint-ChIP-seq from immature natural killer cell (ENCLB284XPW)

description:
https://www.encodeproject.org/experiments/ENCSR469QVG/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR469QVG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR731LOB
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB284XPW
fragmentation methods: none


title: Mint-ChIP-seq from immature natural killer cell (ENCLB779HMO)

description:
https://www.encodeproject.org/experiments/ENCSR469CFL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR469CFL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR204YIP
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB779HMO
fragmentation methods: none

value: ENCBS745FCE at ENCODE; https://www.encodeproject.org/ENCBS745FCE/

value: Derived from ENCODE donor ENCDO553CCA; https://www.encodeproject.org/ENCDO553CCA/


title: Mint-ChIP-seq from brain (ENCLB263NIC)

description:
https://www.encodeproject.org/experiments/ENCSR370MOC/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR370MOC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR824UQL
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB263NIC
fragmentation methods: none

source_name: Homo sapiens female embryo (5 days) brain organoid, 30 days post differentiation

value: brain

value: organoid

value: female

value: embryonic

value: 5 day

value: Paola Arlotta

value: ENCBS001KQF at ENCODE; https://www.encodeproject.org/ENCBS001KQF/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from immature natural killer cell (ENCLB455QXV)

description:
https://www.encodeproject.org/experiments/ENCSR469CFL/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR469CFL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR204YIP
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB455QXV
fragmentation methods: none

value: immature natural killer cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: multiple sclerosis

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler


title: Mint-ChIP-seq from naive B cell (ENCLB675MYX)

description:
https://www.encodeproject.org/experiments/ENCSR560GDT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human naive B cell
experiment encode accession: ENCSR560GDT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR906UGW
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB675MYX
fragmentation methods: none

value: naive B cell

value: primary cell

value: healthy

value: ENCBS973SPF at ENCODE; https://www.encodeproject.org/ENCBS973SPF/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: Mint-ChIP-seq from naive B cell (ENCLB972CCI)

description:
https://www.encodeproject.org/experiments/ENCSR560GDT/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human naive B cell
experiment encode accession: ENCSR560GDT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR906UGW
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB972CCI
fragmentation methods: none


title: Mint-ChIP-seq from brain (ENCLB220BAG)

description:
https://www.encodeproject.org/experiments/ENCSR370MOC/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR370MOC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR824UQL
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB220BAG
fragmentation methods: none

value: brain

value: organoid

value: female

value: embryonic

value: ENCBS219JHY at ENCODE; https://www.encodeproject.org/ENCBS219JHY/


title: Mint-ChIP-seq from brain (ENCLB201PDD)

description:
https://www.encodeproject.org/experiments/ENCSR370MOC/
***************
biological replicate number: 3
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR370MOC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR824UQL
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB201PDD
fragmentation methods: none

value: 5 day

value: Paola Arlotta

value: ENCBS001KQF at ENCODE; https://www.encodeproject.org/ENCBS001KQF/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from brain (ENCLB029PVR)

description:
https://www.encodeproject.org/experiments/ENCSR370MOC/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR370MOC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR824UQL
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB029PVR
fragmentation methods: none


title: Mint-ChIP-seq from brain (ENCLB029SSX)

description:
https://www.encodeproject.org/experiments/ENCSR564DHY/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR564DHY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR389BJR
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB029SSX
fragmentation methods: none

value: ENCBS598CLB at ENCODE; https://www.encodeproject.org/ENCBS598CLB/


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB889SOO)

description:
https://www.encodeproject.org/experiments/ENCSR550DPT/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR550DPT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR344TLH
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB889SOO
fragmentation methods: none

value: CD4+ naive CD3+ CD4+ CD8- CD45RA+ CD45RO- nonTreg

value: not collected

value: multiple sclerosis

value: unknown

value: Bradley Bernstein, Broad

value: ENCBS321BAK at ENCODE; https://www.encodeproject.org/ENCBS321BAK/

value: Derived from ENCODE donor ENCDO157PKH; https://www.encodeproject.org/ENCDO157PKH/


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB737RPO)

description:
https://www.encodeproject.org/experiments/ENCSR550DPT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR550DPT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR344TLH
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB737RPO
fragmentation methods: none

value: primary cell

value: David Hafler


title: WGS from transverse colon (ENCLB257VPS)

description:
https://www.encodeproject.org/experiments/ENCSR549QWF/
***************
biological replicate number: 1
technical replicate number: 1
description: The data contained in this experiment correspond to Illumina-based whole genome shotgun sequencing of EN-TEX donor ENCDO451RUA, a 54 year old male. There are two libraries: PCR-based (9-cycle, ENCLB694UOK) and PCR-free (ENCLB257VPS), both sequenced on multiple lanes to a combined depth of ~ 60X in PE125 format.
experiment encode accession: ENCSR549QWF
assay title: WGS
assembly: GRCh38
encode release date: 2016-04-18
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB257VPS
fragmentation methods: see document

source_name: Homo sapiens transverse colon tissue male adult (54 years)

value: transverse colon

value: tissue

value: Transverse colon tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.

value: 54 year

value: adult

value: male

value: Thomas Gingeras, CSHL

value: ENCBS668MJW at ENCODE; https://www.encodeproject.org/ENCBS668MJW/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB825OXZ)

description:
https://www.encodeproject.org/experiments/ENCSR369WFK/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR369WFK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR867UMZ
encode release date: 2020-09-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB825OXZ
fragmentation methods: none

source_name: Homo sapiens CD14-positive monocyte primary cell with multiple sclerosis, preserved by cryopreservation

value: CD14-positive monocyte

value: Monocyte CD3- CD14+ CD19-

value: not collected

value: ENCBS522LRV at ENCODE; https://www.encodeproject.org/ENCBS522LRV/


title: WGS from transverse colon (ENCLB694UOK)

description:
https://www.encodeproject.org/experiments/ENCSR549QWF/
***************
biological replicate number: 1
technical replicate number: 2
description: The data contained in this experiment correspond to Illumina-based whole genome shotgun sequencing of EN-TEX donor ENCDO451RUA, a 54 year old male. There are two libraries: PCR-based (9-cycle, ENCLB694UOK) and PCR-free (ENCLB257VPS), both sequenced on multiple lanes to a combined depth of ~ 60X in PE125 format.
experiment encode accession: ENCSR549QWF
assay title: WGS
assembly: GRCh38
encode release date: 2016-04-18
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB694UOK
fragmentation methods: see document


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB644BBP)

description:
https://www.encodeproject.org/experiments/ENCSR369WFK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human CD14-positive monocyte
experiment encode accession: ENCSR369WFK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR867UMZ
encode release date: 2020-09-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB644BBP
fragmentation methods: none

value: multiple sclerosis

value: unknown

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from nephron (ENCLB746PPA)

description:
https://www.encodeproject.org/experiments/ENCSR369SUW/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR369SUW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR397RWM
encode release date: 2020-09-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB746PPA
fragmentation methods: none

source_name: Homo sapiens female embryo (5 days) nephron organoid originated from H9, 21 days post differentiation

value: nephron

value: organoid

value: derived from H9 nephron progenitor cells (NPCs) harvested at day 21

value: female

value: healthy

value: embryonic

value: 5 day

value: Joseph Bonventre

value: ENCBS378CGA at ENCODE; https://www.encodeproject.org/ENCBS378CGA/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from nephron (ENCLB352FPQ)

description:
https://www.encodeproject.org/experiments/ENCSR369SUW/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR369SUW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR397RWM
encode release date: 2020-09-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB352FPQ
fragmentation methods: none


title: Mint-ChIP-seq from nephron (ENCLB850PON)

description:
https://www.encodeproject.org/experiments/ENCSR369SUW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR369SUW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR397RWM
encode release date: 2020-09-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB850PON
fragmentation methods: none

source_name: Homo sapiens female embryo (5 days) nephron organoid originated from H9, preserved by cryopreservation

value: H9 derived nephron organoid 21 days

value: ENCBS202RGJ at ENCODE; https://www.encodeproject.org/ENCBS202RGJ/


title: Mint-ChIP-seq from nephron (ENCLB469CWG)

description:
https://www.encodeproject.org/experiments/ENCSR369SUW/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on human H9 derived nephron organoid
experiment encode accession: ENCSR369SUW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR397RWM
encode release date: 2020-09-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB469CWG
fragmentation methods: none


title: Control Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB489BCZ)

description:
https://www.encodeproject.org/experiments/ENCSR456XXL/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on CD4-positive, CD25-positive, alpha-beta regulatory T cell
experiment encode accession: ENCSR456XXL
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB489BCZ

source_name: Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T primary cell with multiple sclerosis

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: David Hafler

value: ENCBS269FKR at ENCODE; https://www.encodeproject.org/ENCBS269FKR/

value: Derived from ENCODE donor ENCDO553CCA; https://www.encodeproject.org/ENCDO553CCA/


title: 20-19FKb1-mDC-SM_S113

city: Atlanta

first: Steven

middle: E.

last: Bosinger

address: 954 Gatewood Rd NE

institute: Emory University

library_source: transcriptomic

data_processing:
Illumina bcl2fastq v2.17.1.14 was used for demultiplexing.
Reads were mapped using STAR v2.5.2b with default alignment parameters.
For SIV+ vs SIV- pDC samples (Figures 1 & 2), alignment was done to either MacaM v7 (rhesus macaque samples) or Caty 1.0 (sooty mangabey samples). Only gene names that were common between the two were used
For ranking genes expressed on surface and transcription factors, samples were aligned to MacaM v7 and GRCh38
For all other analyses, samples were aligned to MacaM v7
Abundance estimation of raw read counts per transcript was done internally with STAR using the algorithm of htseq-count.
Genome_build: Rhesus macaque (MacaM v7.8.2 - https://www.unmc.edu/rhesusgenechip/index.htm#Rhesus), sooty mangabey (Caty 1.0 - NCBI GCF_000955945.1), human(GRCh38 ensembl relase 86).
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

molecule: total RNA

organism: Cercocebus atys

source_name: PBMC

extract_protocol:
Total RNA was purified using the Qiagen miRNeasy Mini Kit
cDNA was generated using the Clontech SMARTseq v4 Ultra Low Input kit and libraries were prepared for sequencing using the Illumina HiSeq3000

tag: batch id

tag: subject id

tag: infected

value: SIVneg

tag: cell type

value: mDC


title: 22-21FRb1-mDC-SM_S115


title: 24-28FTb1-mDC-SM_S117


title: 18-15FJb1-mDC-SM_S111


title: Mint-ChIP-seq from IgD-negative memory B cell (ENCLB854EIG)

description:
https://www.encodeproject.org/experiments/ENCSR450SVZ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human IgD-negative memory B cell
experiment encode accession: ENCSR450SVZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR469VTN
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB854EIG
fragmentation methods: none

value: IgD-negative memory B cell

value: B memory CD3- CD14- CD19+ CD27+ IgD-

value: unknown

value: Bradley Bernstein, Broad

value: ENCBS677QPD at ENCODE; https://www.encodeproject.org/ENCBS677QPD/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: Mint-ChIP-seq from IgD-negative memory B cell (ENCLB321JAZ)

description:
https://www.encodeproject.org/experiments/ENCSR450SVZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human IgD-negative memory B cell
experiment encode accession: ENCSR450SVZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR469VTN
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB321JAZ
fragmentation methods: none

value: healthy


title: 304-33FTv-mDC-SM_S125

value: FTv

value: SIVpos


title: Control Mint-ChIP-seq from H9 (ENCLB185HCV)

description:
https://www.encodeproject.org/experiments/ENCSR365EAV/
***************
biological replicate number: 3
technical replicate number: 2
description: Control Mint-ChIP-seq on human H9
experiment encode accession: ENCSR365EAV
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-09-08
lab: Bradley Bernstein, Broad
library encode accession: ENCLB185HCV

source_name: Homo sapiens H9 cell line

tag: line

value: cell line

value: female

value: embryonic

value: 5 day

value: Kevin Eggan and Ralda Nehme

value: ENCBS561LGY at ENCODE; https://www.encodeproject.org/ENCBS561LGY/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Control Mint-ChIP-seq from H9 (ENCLB377NUB)

description:
https://www.encodeproject.org/experiments/ENCSR365EAV/
***************
biological replicate number: 2
technical replicate number: 2
description: Control Mint-ChIP-seq on human H9
experiment encode accession: ENCSR365EAV
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-09-08
lab: Bradley Bernstein, Broad
library encode accession: ENCLB377NUB

value: ENCBS161LPX at ENCODE; https://www.encodeproject.org/ENCBS161LPX/


title: 28-42FJy-mDC-SM_S121

value: FJy

value: mDC


title: 26-47FNy-mDC-SM_S119

value: FNy


title: Control Mint-ChIP-seq from H9 (ENCLB072OKN)

description:
https://www.encodeproject.org/experiments/ENCSR365EAV/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on human H9
experiment encode accession: ENCSR365EAV
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-09-08
lab: Bradley Bernstein, Broad
library encode accession: ENCLB072OKN

value: Bradley Bernstein, Broad

value: ENCBS062ZAE at ENCODE; https://www.encodeproject.org/ENCBS062ZAE/


title: Control Mint-ChIP-seq from H9 (ENCLB133EZU)

description:
https://www.encodeproject.org/experiments/ENCSR365EAV/
***************
biological replicate number: 2
technical replicate number: 1
description: Control Mint-ChIP-seq on human H9
experiment encode accession: ENCSR365EAV
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-09-08
lab: Bradley Bernstein, Broad
library encode accession: ENCLB133EZU


title: 23-12FTb1-pDC-SM_S116

description: RawCounts_SIVpos_SIVneg_MacaM_Caty_Common.txt,RawCounts_mDC_MacaM.txt

value: SIVneg

value: pDC


title: Mint-ChIP-seq from nephron progenitor cell (ENCLB778XDK)

description:
https://www.encodeproject.org/experiments/ENCSR450CSM/
***************
biological replicate number: 2
technical replicate number: 3
description: H3K27ac Mint-ChIP-seq on human H9 derived nephron progenitor cell
experiment encode accession: ENCSR450CSM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR425YBK
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB778XDK
fragmentation methods: none

source_name: Homo sapiens female embryo (5 days) nephron progenitor in vitro differentiated cells

value: nephron progenitor cell

value: in vitro differentiated cells

value: H9 NPC (Day 8):Nephron progenitor cells derived from H9 ES cells

value: healthy

value: Joseph Bonventre

value: ENCBS491YOI at ENCODE; https://www.encodeproject.org/ENCBS491YOI/


title: 19-5FKb1-pDC-SM_S112


title: Control Mint-ChIP-seq from H9 (ENCLB386TDO)

description:
https://www.encodeproject.org/experiments/ENCSR365EAV/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on human H9
experiment encode accession: ENCSR365EAV
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-09-08
lab: Bradley Bernstein, Broad
library encode accession: ENCLB386TDO

value: cell line

value: female

value: embryonic

value: 5 day

value: Kevin Eggan and Ralda Nehme


title: Mint-ChIP-seq from nephron progenitor cell (ENCLB081MCA)

description:
https://www.encodeproject.org/experiments/ENCSR450CSM/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human H9 derived nephron progenitor cell
experiment encode accession: ENCSR450CSM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR425YBK
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB081MCA
fragmentation methods: none

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from nephron progenitor cell (ENCLB670FNI)

description:
https://www.encodeproject.org/experiments/ENCSR450CSM/
***************
biological replicate number: 2
technical replicate number: 4
description: H3K27ac Mint-ChIP-seq on human H9 derived nephron progenitor cell
experiment encode accession: ENCSR450CSM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR425YBK
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB670FNI
fragmentation methods: none


title: 21-8FRb1-pDC-SM_S114


title: Control Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB486SFH)

description:
https://www.encodeproject.org/experiments/ENCSR456XXL/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on CD4-positive, CD25-positive, alpha-beta regulatory T cell
experiment encode accession: ENCSR456XXL
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-08-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB486SFH

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: multiple sclerosis

value: unknown

value: David Hafler

value: ENCBS269FKR at ENCODE; https://www.encodeproject.org/ENCBS269FKR/

value: Derived from ENCODE donor ENCDO553CCA; https://www.encodeproject.org/ENCDO553CCA/


title: 17-4FJb1-pDC-SM_S110

value: SIVneg

value: pDC


title: Mint-ChIP-seq from nephron progenitor cell (ENCLB845EKK)

description:
https://www.encodeproject.org/experiments/ENCSR450CSM/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human H9 derived nephron progenitor cell
experiment encode accession: ENCSR450CSM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR425YBK
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB845EKK
fragmentation methods: none

value: nephron progenitor cell

value: in vitro differentiated cells

value: H9 NPC (Day 8):Nephron progenitor cells derived from H9 ES cells

value: healthy

value: Bradley Bernstein, Broad

value: Joseph Bonventre

value: ENCBS835ZTQ at ENCODE; https://www.encodeproject.org/ENCBS835ZTQ/


title: 29-13FTv-pDC-SM_S122

value: FTv

value: SIVpos


title: Mint-ChIP-seq from immature natural killer cell (ENCLB182HSK)

description:
https://www.encodeproject.org/experiments/ENCSR394JFQ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR394JFQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR242ARJ
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB182HSK
fragmentation methods: none

source_name: Homo sapiens immature natural killer primary cell

value: immature natural killer cell

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: ENCBS142IVK at ENCODE; https://www.encodeproject.org/ENCBS142IVK/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: 25-18FNy-pDC-SM_S118

value: FNy


title: 27-17FJy-pDC-SM_S120

value: Fjy

value: pDC


title: 32-37FUv-mDC-SM_S124

value: FUv

value: mDC


title: 8_92-11R_PBMCNx_S7

description: RawCounts_PBMCvsLN_Surface_TF_MacaM.txt,RawCounts_Surface_TF_GRCh38.txt

organism: Macaca mulatta


title: 9_275-11R_LNNx_S8

source_name: LN


title: Mint-ChIP-seq from nephron progenitor cell (ENCLB327AVV)

description:
https://www.encodeproject.org/experiments/ENCSR450CSM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on human H9 derived nephron progenitor cell
experiment encode accession: ENCSR450CSM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR425YBK
encode release date: 2021-05-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB327AVV
fragmentation methods: none

value: nephron progenitor cell

value: in vitro differentiated cells

value: H9 NPC (Day 8):Nephron progenitor cells derived from H9 ES cells

value: female

value: healthy

value: embryonic

value: 5 day

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB297OKE)

description:
https://www.encodeproject.org/experiments/ENCSR540BKT/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR540BKT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR034OUM
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB297OKE
fragmentation methods: none

source_name: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T primary cell

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS928WKW at ENCODE; https://www.encodeproject.org/ENCBS928WKW/

value: Derived from ENCODE donor ENCDO258PRN; https://www.encodeproject.org/ENCDO258PRN/


title: 10_275-11R_PBMCNx_S9

value: SIVpos

value: pDC


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB922ORS)

description:
https://www.encodeproject.org/experiments/ENCSR540BKT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human naive thymus-derived CD4-positive, alpha-beta T cell
experiment encode accession: ENCSR540BKT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR034OUM
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB922ORS
fragmentation methods: none

value: not collected


title: 6_169-11R_PBMCNx_S5


title: Control Mint-ChIP-seq from H9 (ENCLB264ALT)

description:
https://www.encodeproject.org/experiments/ENCSR365EAV/
***************
biological replicate number: 3
technical replicate number: 1
description: Control Mint-ChIP-seq on human H9
experiment encode accession: ENCSR365EAV
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2020-09-08
lab: Bradley Bernstein, Broad
library encode accession: ENCLB264ALT

value: cell line

value: Kevin Eggan and Ralda Nehme

value: ENCBS561LGY at ENCODE; https://www.encodeproject.org/ENCBS561LGY/


title: 12_272-11R_PBMCNx_S11


title: 7_92-11R_LNNx_S6


title: 5_169-11R_LNNx_S4


title: Mint-ChIP-seq from neural progenitor cell (ENCLB820LRH)

description:
https://www.encodeproject.org/experiments/ENCSR536DCS/
***************
biological replicate number: 3
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human H9 derived neural progenitor cell
experiment encode accession: ENCSR536DCS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR010GRX
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB820LRH
fragmentation methods: none

source_name: Homo sapiens female embryo (5 days) neural progenitor in vitro differentiated cells

value: neural progenitor cell

value: in vitro differentiated cells

value: rapid NPCs, NGN2 +patterning; these are a form of neural progenitor cell -- see more here:https://docs.google.com/document/d/1VDqqe1h1WrG4kDADTFBROGCJrrNvYw5IHCNyMTYUASw/edit#heading=h.gjdgxs

value: female

value: healthy

value: ENCBS167WAM at ENCODE; https://www.encodeproject.org/ENCBS167WAM/


title: Mint-ChIP-seq from neural progenitor cell (ENCLB698WTE)

description:
https://www.encodeproject.org/experiments/ENCSR536DCS/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human H9 derived neural progenitor cell
experiment encode accession: ENCSR536DCS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR010GRX
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB698WTE
fragmentation methods: none

value: embryonic

value: 5 day

value: ENCBS959UMI at ENCODE; https://www.encodeproject.org/ENCBS959UMI/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: 31-14FUv-pDC-SM_S123

value: FUv


title: 3_109-11R_PBMCNx_S2

value: SIVpos


title: Mint-ChIP-seq from neural progenitor cell (ENCLB092PMD)

description:
https://www.encodeproject.org/experiments/ENCSR536DCS/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human H9 derived neural progenitor cell
experiment encode accession: ENCSR536DCS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR010GRX
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB092PMD
fragmentation methods: none

value: Bradley Bernstein, Broad


title: 5-97-11R-PdC_S39

value: pDC


title: Mint-ChIP-seq from neural progenitor cell (ENCLB040OTW)

description:
https://www.encodeproject.org/experiments/ENCSR536DCS/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human H9 derived neural progenitor cell
experiment encode accession: ENCSR536DCS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR010GRX
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB040OTW
fragmentation methods: none

value: ENCBS606NEX at ENCODE; https://www.encodeproject.org/ENCBS606NEX/


title: 4_109-11R_LNNx_S3


title: Mint-ChIP-seq from neural progenitor cell (ENCLB429UYG)

description:
https://www.encodeproject.org/experiments/ENCSR536DCS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human H9 derived neural progenitor cell
experiment encode accession: ENCSR536DCS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR010GRX
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB429UYG
fragmentation methods: none

value: Kevin Eggan and Ralda Nehme


title: Mint-ChIP-seq from neural progenitor cell (ENCLB611WUC)

description:
https://www.encodeproject.org/experiments/ENCSR536DCS/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human H9 derived neural progenitor cell
experiment encode accession: ENCSR536DCS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR010GRX
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB611WUC
fragmentation methods: none


title: 11-79-11R-PLN_S45


title: 10-97-11R-PLN_S44


title: 7-112-11R-PdC_S41


title: 12-112-11R-PLN_S46


title: 6-79-11R-PdC_S40


title: Mint-ChIP-seq from brain (ENCLB212KLC)

description:
https://www.encodeproject.org/experiments/ENCSR354QJC/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR354QJC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR389BJR
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB212KLC
fragmentation methods: none

source_name: Homo sapiens female embryo (5 days) brain organoid, 180 days post differentiation

value: brain

value: organoid

value: Paola Arlotta

value: ENCBS358VQQ at ENCODE; https://www.encodeproject.org/ENCBS358VQQ/


title: 8-102-11R-LN_S42


title: Mint-ChIP-seq from brain (ENCLB010UNH)

description:
https://www.encodeproject.org/experiments/ENCSR354QJC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR354QJC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR389BJR
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB010UNH
fragmentation methods: none

value: female

value: ENCBS615FKW at ENCODE; https://www.encodeproject.org/ENCBS615FKW/


title: Mint-ChIP-seq from brain (ENCLB149IED)

description:
https://www.encodeproject.org/experiments/ENCSR354QJC/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR354QJC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR389BJR
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB149IED
fragmentation methods: none

value: healthy


title: 2_218-11R_LNNx_S1


title: Mint-ChIP-seq from brain (ENCLB166TUL)

description:
https://www.encodeproject.org/experiments/ENCSR354QJC/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR354QJC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR389BJR
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB166TUL
fragmentation methods: none

value: embryonic

value: ENCBS598CLB at ENCODE; https://www.encodeproject.org/ENCBS598CLB/


title: Mint-ChIP-seq from brain (ENCLB336RYF)

description:
https://www.encodeproject.org/experiments/ENCSR354QJC/
***************
biological replicate number: 3
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR354QJC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR389BJR
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB336RYF
fragmentation methods: none

value: 5 day


title: R222_pDC_med_TAAGGCGA-CTCTCTAT


title: Mint-ChIP-seq from brain (ENCLB153OKF)

description:
https://www.encodeproject.org/experiments/ENCSR354QJC/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR354QJC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR389BJR
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB153OKF
fragmentation methods: none

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: R218_pDC_neg_GGACTCCT-CTCTCTAT


title: Mint-ChIP-seq from naive B cell (ENCLB626GQX)

description:
https://www.encodeproject.org/experiments/ENCSR445DNH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human naive B cell
experiment encode accession: ENCSR445DNH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR707UVZ
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB626GQX

source_name: Homo sapiens naive B primary cell with multiple sclerosis

value: naive B cell

value: primary cell

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: multiple sclerosis

value: unknown

value: David Hafler

value: ENCBS049BNE at ENCODE; https://www.encodeproject.org/ENCBS049BNE/

value: Derived from ENCODE donor ENCDO553CCA; https://www.encodeproject.org/ENCDO553CCA/


title: Mint-ChIP-seq from naive B cell (ENCLB681EJR)

description:
https://www.encodeproject.org/experiments/ENCSR445DNH/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human naive B cell
experiment encode accession: ENCSR445DNH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR707UVZ
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB681EJR

value: Bradley Bernstein, Broad


title: R195_pDC_H7N3_TCCTGAGC-CTCTCTAT

value: pDC


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB675MST)

description:
https://www.encodeproject.org/experiments/ENCSR354GNT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR354GNT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR128KDZ
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB675MST
fragmentation methods: none

source_name: Homo sapiens CD8-positive, alpha-beta memory T primary cell with multiple sclerosis

value: CD8-positive, alpha-beta memory T cell

value: ENCBS757PLC at ENCODE; https://www.encodeproject.org/ENCBS757PLC/


title: 4-63RYa15-mDC-RM_S97

value: SIVneg

value: mDC


title: 6-2RVp4-mDC-RM_S99


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB996LPY)

description:
https://www.encodeproject.org/experiments/ENCSR354GNT/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR354GNT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR128KDZ
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB996LPY
fragmentation methods: none


title: R218_pDC_H7N3_TAGGCATG-CTCTCTAT


title: R195_pDC_neg_AGGCAGAA-CTCTCTAT


title: 14-91RQn5-mDC-RM_S107


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB678OMT)

description:
https://www.encodeproject.org/experiments/ENCSR535YYH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR535YYH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR128KDZ
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB678OMT
fragmentation methods: none


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB580ZDY)

description:
https://www.encodeproject.org/experiments/ENCSR535YYH/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on human CD8-positive, alpha-beta memory T cell
experiment encode accession: ENCSR535YYH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR128KDZ
encode release date: 2020-07-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB580ZDY
fragmentation methods: none


title: Mint-ChIP-seq from immature natural killer cell (ENCLB309SXF)

description:
https://www.encodeproject.org/experiments/ENCSR442OSV/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on human immature natural killer cell
experiment encode accession: ENCSR442OSV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR314IFB
encode release date: 2020-09-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB309SXF
fragmentation methods: none
instrument models: Illumina HiSeq 2500,Illumina NovaSeq 6000

value: immature natural killer cell

value: healthy

value: ENCBS497KWS at ENCODE; https://www.encodeproject.org/ENCBS497KWS/

value: Derived from ENCODE donor ENCDO922TOC; https://www.encodeproject.org/ENCDO922TOC/


title: 1-102-11R-PdC_S38

description: RawCounts_PBMCvsLN_Surface_TF_MacaM.txt,RawCounts_Surface_TF_GRCh38.txt

value: SIVpos


title: 2-57RMt4-mDC-RM_S95


title: 16-95112-11-mDC-RM_S109


title: Mint-ChIP-seq from brain (ENCLB955ROU)

description:
https://www.encodeproject.org/experiments/ENCSR534KYA/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR534KYA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB955ROU
fragmentation methods: none

source_name: Homo sapiens female embryo (5 days) brain organoid, 90 days post differentiation

value: brain

value: organoid

value: female

value: embryonic

value: 5 day

value: Paola Arlotta

value: ENCBS140WFQ at ENCODE; https://www.encodeproject.org/ENCBS140WFQ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from brain (ENCLB950ZRH)

description:
https://www.encodeproject.org/experiments/ENCSR534KYA/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR534KYA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB950ZRH
fragmentation methods: none

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from brain (ENCLB040NCL)

description:
https://www.encodeproject.org/experiments/ENCSR534KYA/
***************
biological replicate number: 3
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR534KYA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB040NCL
fragmentation methods: none

value: ENCBS277HZS at ENCODE; https://www.encodeproject.org/ENCBS277HZS/


title: Mint-ChIP-seq from brain (ENCLB810JME)

description:
https://www.encodeproject.org/experiments/ENCSR534KYA/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR534KYA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB810JME
fragmentation methods: none

value: ENCBS069IXO at ENCODE; https://www.encodeproject.org/ENCBS069IXO/


title: Mint-ChIP-seq from brain (ENCLB989SVV)

description:
https://www.encodeproject.org/experiments/ENCSR534KYA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR534KYA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR577JQZ
encode release date: 2021-05-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB989SVV
fragmentation methods: none


title: 8-78102-11-mDC-RM_S101

value: mDC


title: 10-7097-11-mDC-RM_S103


title: R222_pDC_H7N3_CGTACTAG-CTCTCTAT

value: pDC


title: 12-8779-11-mDC-RM_S105


title: 3-22RYa15-pDC-RM_S96

description: RawCounts_SIVpos_SIVneg_MacaM_Caty_Common.txt,RawCounts_mDC_MacaM.txt

value: SIVneg