title: TF ChIP-seq from A549 (ENCLB692XVK)

description:
https://www.encodeproject.org/experiments/ENCSR788VKG/
***************
biological replicate number: 1
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 15 mins.
experiment encode accession: ENCSR788VKG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR212FST
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB692XVK
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 15 minutes

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:15; duration_units:minute;

value: ENCBS165TOL at ENCODE; https://www.encodeproject.org/ENCBS165TOL/


title: Histone ChIP-seq from A549 (ENCLB116VJM)

status: Public on May 23 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR734FLK/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K27ac ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 mins.
experiment encode accession: ENCSR734FLK
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR085WWL
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB116VJM
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 5 minutes

tag: antibody

tag: line

value: cell line

tag: biosample encode accession

tag: Sex

value: male

tag: dev stage

value: adult

tag: age

value: 58 year

tag: lab

value: Tim Reddy, Duke

tag: source

value: ATCC

tag: treatments

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:minute;

tag: link

value: ENCBS322EKP at ENCODE; https://www.encodeproject.org/ENCBS322EKP/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Histone ChIP-seq from RWPE2 (ENCLB056GBE)

description:
https://www.encodeproject.org/experiments/ENCSR785DEU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on human RWPE2
experiment encode accession: ENCSR785DEU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR753IXW
encode release date: 2021-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB056GBE
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens RWPE2 cell line

value: unknown

value: John Stamatoyannopoulos, UW

value: ENCBS314QIO at ENCODE; https://www.encodeproject.org/ENCBS314QIO/

value: Derived from ENCODE donor ENCDO135ZNV; https://www.encodeproject.org/ENCDO135ZNV/


title: Histone ChIP-seq from A549 (ENCLB715HAN)

description:
https://www.encodeproject.org/experiments/ENCSR734FLK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 mins.
experiment encode accession: ENCSR734FLK
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR085WWL
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB715HAN
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS729ATM at ENCODE; https://www.encodeproject.org/ENCBS729ATM/


title: TF ChIP-seq from SK-N-SH (ENCLB282JVA)

description:
https://www.encodeproject.org/experiments/ENCSR207GYC/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF70 ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR207GYC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR618JZG, ENCSR835DTI
encode release date: 2020-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB282JVA
size range: 450-650

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting ZNF70 treated with 6uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

tag: description

value: SK-N-SH cell line (treated with 6uM all-trans-retinoic acid for 48 hours) stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF70.

value: female

value: child

value: 4 year

value: Michael Snyder, Stanford

value: Michael Snyder

tag: health state

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS188PXC at ENCODE; https://www.encodeproject.org/ENCBS188PXC/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: Histone ChIP-seq from HL-60 (ENCLB884PDL)

description:
https://www.encodeproject.org/experiments/ENCSR198IHT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on human HL-60
experiment encode accession: ENCSR198IHT
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR309MYO
encode release date: 2021-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB884PDL
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens HL-60 cell line

value: cell line

value: acute promyelocytic leukemia

value: adult

value: 36 year

value: ATCC

value: ENCBS976DTB at ENCODE; https://www.encodeproject.org/ENCBS976DTB/

value: Derived from ENCODE donor ENCDO000AAM; https://www.encodeproject.org/ENCDO000AAM/


title: TF ChIP-seq from SK-N-SH (ENCLB559UCJ)

description:
https://www.encodeproject.org/experiments/ENCSR207GYC/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF70 ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR207GYC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR618JZG, ENCSR835DTI
encode release date: 2020-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB559UCJ
size range: 450-650

value: SK-N-SH

value: SK-N-SH cell line (treated with 6uM all-trans-retinoic acid for 48 hours) stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF70.

value: ENCBS233KKL at ENCODE; https://www.encodeproject.org/ENCBS233KKL/


title: TF ChIP-seq from A549 (ENCLB355YNF)

description:
https://www.encodeproject.org/experiments/ENCSR716SJK/
***************
biological replicate number: 3
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 15 mins.
experiment encode accession: ENCSR716SJK
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR212FST
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB355YNF
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: male

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:15; duration_units:minute;

value: ENCBS335AHR at ENCODE; https://www.encodeproject.org/ENCBS335AHR/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Histone ChIP-seq from HL-60 (ENCLB805WEO)

description:
https://www.encodeproject.org/experiments/ENCSR198IHT/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 ChIP-seq on human HL-60
experiment encode accession: ENCSR198IHT
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR309MYO
encode release date: 2021-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB805WEO
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: female

value: John Stamatoyannopoulos, UW

value: ENCBS267MEW at ENCODE; https://www.encodeproject.org/ENCBS267MEW/


title: TF ChIP-seq from K562 (ENCLB961IAO)

description:
https://www.encodeproject.org/experiments/ENCSR184IQF/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-SHOX2 ChIP-seq on human K562
experiment encode accession: ENCSR184IQF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR409VQS
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB961IAO
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting SHOX2

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: chronic myelogenous leukemia (CML)

tag: passage number

value: ENCBS089ARY at ENCODE; https://www.encodeproject.org/ENCBS089ARY/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from A549 (ENCLB723RJN)

description:
https://www.encodeproject.org/experiments/ENCSR716SJK/
***************
biological replicate number: 1
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 15 mins.
experiment encode accession: ENCSR716SJK
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR212FST
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB723RJN
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: male

value: ATCC

value: ENCBS452UTE at ENCODE; https://www.encodeproject.org/ENCBS452UTE/


title: TF ChIP-seq from A549 (ENCLB673JUM)

description:
https://www.encodeproject.org/experiments/ENCSR192PBJ/
***************
biological replicate number: 3
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 mins.
experiment encode accession: ENCSR192PBJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR814XCZ
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB673JUM
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 cell line

value: 58 year

value: Tim Reddy, Duke

value: ENCBS095SEF at ENCODE; https://www.encodeproject.org/ENCBS095SEF/


title: TF ChIP-seq from SK-N-SH (ENCLB802EGS)

description:
https://www.encodeproject.org/experiments/ENCSR758GOA/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-CREB5 ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR758GOA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042UCB, ENCSR411AFQ
encode release date: 2020-08-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB802EGS
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting CREB5 treated with 6uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: cell line

value: female

value: child

value: 4 year

value: Michael Snyder

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS532CTN at ENCODE; https://www.encodeproject.org/ENCBS532CTN/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: TF ChIP-seq from SK-N-SH (ENCLB733XGN)

description:
https://www.encodeproject.org/experiments/ENCSR754GYI/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-BNC2 ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR754GYI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR540RTZ, ENCSR042UCB
encode release date: 2020-08-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB733XGN
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting BNC2 treated with 6uM all-trans-retinoic acid for 48 hours

value: Michael Snyder, Stanford

value: ENCBS832GNJ at ENCODE; https://www.encodeproject.org/ENCBS832GNJ/


title: TF ChIP-seq from SK-N-SH (ENCLB412IDA)

description:
https://www.encodeproject.org/experiments/ENCSR754ALX/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF565 ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR754ALX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR247NVH, ENCSR618JZG
encode release date: 2020-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB412IDA
size range: 450-650

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting ZNF565 treated with 6uM all-trans-retinoic acid for 48 hours

value: SK-N-SH cell line (treated with 6uM all-trans-retinoic acid for 48 hours) stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF565.

value: ENCBS356OOP at ENCODE; https://www.encodeproject.org/ENCBS356OOP/


title: TF ChIP-seq from A549 (ENCLB710HQW)

description:
https://www.encodeproject.org/experiments/ENCSR192PBJ/
***************
biological replicate number: 2
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 mins.
experiment encode accession: ENCSR192PBJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR814XCZ
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB710HQW
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: male

value: adult

value: 58 year

value: ATCC

value: ENCBS032EMA at ENCODE; https://www.encodeproject.org/ENCBS032EMA/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from K562 (ENCLB260THE)

description:
https://www.encodeproject.org/experiments/ENCSR184IQF/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-SHOX2 ChIP-seq on human K562
experiment encode accession: ENCSR184IQF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR409VQS
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB260THE
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: female

value: 53 year

value: Kevin White

value: chronic myelogenous leukemia (CML)

value: ENCBS517XBC at ENCODE; https://www.encodeproject.org/ENCBS517XBC/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from SK-N-SH (ENCLB052TPR)

description:
https://www.encodeproject.org/experiments/ENCSR706OJM/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-POU6F1 ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR706OJM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR759IVF, ENCSR086GBI
encode release date: 2021-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB052TPR
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting POU6F1 treated with 6uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: child

value: 4 year

value: Michael Snyder, Stanford

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS553DXX at ENCODE; https://www.encodeproject.org/ENCBS553DXX/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: TF ChIP-seq from SK-N-SH (ENCLB817OVX)

description:
https://www.encodeproject.org/experiments/ENCSR706OJM/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-POU6F1 ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR706OJM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR759IVF, ENCSR086GBI
encode release date: 2021-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB817OVX
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: ATCC

value: ENCBS284SKK at ENCODE; https://www.encodeproject.org/ENCBS284SKK/


title: TF ChIP-seq from A549 (ENCLB344UGC)

description:
https://www.encodeproject.org/experiments/ENCSR192PBJ/
***************
biological replicate number: 1
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 mins.
experiment encode accession: ENCSR192PBJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR814XCZ
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB344UGC
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: cell line

value: male

value: adult

value: 58 year

value: Tim Reddy, Duke

value: ENCBS756PNA at ENCODE; https://www.encodeproject.org/ENCBS756PNA/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from A549 (ENCLB613MNI)

description:
https://www.encodeproject.org/experiments/ENCSR174FJD/
***************
biological replicate number: 1
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 mins.
experiment encode accession: ENCSR174FJD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR204GMP
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB613MNI
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 10 minutes

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:10; duration_units:minute;

value: ENCBS270JQP at ENCODE; https://www.encodeproject.org/ENCBS270JQP/


title: TF ChIP-seq from A549 (ENCLB123FTG)

description:
https://www.encodeproject.org/experiments/ENCSR174FJD/
***************
biological replicate number: 3
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 mins.
experiment encode accession: ENCSR174FJD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR204GMP
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB123FTG
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS443PXM at ENCODE; https://www.encodeproject.org/ENCBS443PXM/


title: TF ChIP-seq from K562 (ENCLB129EAX)

description:
https://www.encodeproject.org/experiments/ENCSR172OSX/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZBTB12 ChIP-seq on human K562
experiment encode accession: ENCSR172OSX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR292SJS
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB129EAX
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZBTB12

value: female

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: chronic myelogenous leukemia (CML)

value: ENCBS259BPH at ENCODE; https://www.encodeproject.org/ENCBS259BPH/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB393CYF)

description:
https://www.encodeproject.org/experiments/ENCSR172OSX/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZBTB12 ChIP-seq on human K562
experiment encode accession: ENCSR172OSX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR292SJS
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB393CYF
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: ENCBS409RBU at ENCODE; https://www.encodeproject.org/ENCBS409RBU/


title: TF ChIP-seq from K562 (ENCLB750WDL)

description:
https://www.encodeproject.org/experiments/ENCSR172XJS/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF165 ChIP-seq on human K562
experiment encode accession: ENCSR172XJS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR150QOJ
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB750WDL
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF165

value: adult

value: ENCBS066MIR at ENCODE; https://www.encodeproject.org/ENCBS066MIR/


title: TF ChIP-seq from A549 (ENCLB525IPP)

description:
https://www.encodeproject.org/experiments/ENCSR174FJD/
***************
biological replicate number: 2
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 mins.
experiment encode accession: ENCSR174FJD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR204GMP
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB525IPP
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: ENCBS032WTC at ENCODE; https://www.encodeproject.org/ENCBS032WTC/


title: TF ChIP-seq from A549 (ENCLB397FUD)

description:
https://www.encodeproject.org/experiments/ENCSR167QIJ/
***************
biological replicate number: 2
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 20 mins.
experiment encode accession: ENCSR167QIJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR324VMZ
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB397FUD
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 20 minutes

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:20; duration_units:minute;

value: ENCBS930EPD at ENCODE; https://www.encodeproject.org/ENCBS930EPD/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from K562 (ENCLB336RWF)

description:
https://www.encodeproject.org/experiments/ENCSR643JRH/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-MAZ ChIP-seq on human K562
experiment encode accession: ENCSR643JRH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR029KZF, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB336RWF
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting MAZ

value: MAZ

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to MAZ.

value: female

value: 53 year

value: Michael Snyder, Stanford

value: ENCBS506QOL at ENCODE; https://www.encodeproject.org/ENCBS506QOL/


title: TF ChIP-seq from K562 (ENCLB945LPU)

description:
https://www.encodeproject.org/experiments/ENCSR643JRH/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-MAZ ChIP-seq on human K562
experiment encode accession: ENCSR643JRH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR029KZF, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB945LPU
size range: 450-650

value: cell line

value: Kevin White

value: chronic myelogenous leukemia (CML)

value: ENCBS519OFN at ENCODE; https://www.encodeproject.org/ENCBS519OFN/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from A549 (ENCLB023FWV)

description:
https://www.encodeproject.org/experiments/ENCSR167QIJ/
***************
biological replicate number: 3
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 20 mins.
experiment encode accession: ENCSR167QIJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR324VMZ
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB023FWV
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: adult

value: 58 year

value: Tim Reddy, Duke

value: ENCBS207IUA at ENCODE; https://www.encodeproject.org/ENCBS207IUA/


title: total RNA-seq from WTC11 (ENCLB911OTA)

description:
https://www.encodeproject.org/experiments/ENCSR166IFS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR166IFS
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-02-01
lab: Yin Shen, UCSF
library encode accession: ENCLB911OTA

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using TALEN

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS751XQC at ENCODE; https://www.encodeproject.org/ENCBS751XQC/

value: Derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: Histone ChIP-seq from RWPE2 (ENCLB376EQB)

description:
https://www.encodeproject.org/experiments/ENCSR161GUA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on human RWPE2
experiment encode accession: ENCSR161GUA
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR753IXW
encode release date: 2021-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB376EQB
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: unknown

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS684UIM at ENCODE; https://www.encodeproject.org/ENCBS684UIM/

value: Derived from ENCODE donor ENCDO135ZNV; https://www.encodeproject.org/ENCDO135ZNV/


title: Histone ChIP-seq from RWPE2 (ENCLB987UTS)

description:
https://www.encodeproject.org/experiments/ENCSR161GUA/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on human RWPE2
experiment encode accession: ENCSR161GUA
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR753IXW
encode release date: 2021-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB987UTS
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: ENCBS314QIO at ENCODE; https://www.encodeproject.org/ENCBS314QIO/


title: TF ChIP-seq from K562 (ENCLB257PWO)

description:
https://www.encodeproject.org/experiments/ENCSR630KQP/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF250 ChIP-seq on human K562
experiment encode accession: ENCSR630KQP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR232KAO, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB257PWO
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF250

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF250.

value: female

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: chronic myelogenous leukemia (CML)

value: ENCBS021EBG at ENCODE; https://www.encodeproject.org/ENCBS021EBG/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB881XRV)

description:
https://www.encodeproject.org/experiments/ENCSR630KQP/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF250 ChIP-seq on human K562
experiment encode accession: ENCSR630KQP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR232KAO, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB881XRV
size range: 450-650

value: adult

value: ENCBS007UBK at ENCODE; https://www.encodeproject.org/ENCBS007UBK/


title: TF ChIP-seq from K562 (ENCLB761CHI)

description:
https://www.encodeproject.org/experiments/ENCSR172XJS/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF165 ChIP-seq on human K562
experiment encode accession: ENCSR172XJS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR328FYU, ENCSR150QOJ
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB761CHI
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: ENCBS294OMN at ENCODE; https://www.encodeproject.org/ENCBS294OMN/


title: TF ChIP-seq from A549 (ENCLB400HRQ)

description:
https://www.encodeproject.org/experiments/ENCSR628MQN/
***************
biological replicate number: 1
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 20 mins.
experiment encode accession: ENCSR628MQN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR324VMZ
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB400HRQ
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: male

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:20; duration_units:minute;

value: ENCBS722DJI at ENCODE; https://www.encodeproject.org/ENCBS722DJI/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from K562 (ENCLB164LYX)

description:
https://www.encodeproject.org/experiments/ENCSR125YGM/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ID3 ChIP-seq on human K562
experiment encode accession: ENCSR125YGM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR766WPH
encode release date: 2021-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB164LYX
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ID3

value: cell line

value: female

value: ATCC

value: ENCBS287STH at ENCODE; https://www.encodeproject.org/ENCBS287STH/


title: TF ChIP-seq from A549 (ENCLB734LBR)

description:
https://www.encodeproject.org/experiments/ENCSR110UPH/
***************
biological replicate number: 2
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 mins.
experiment encode accession: ENCSR110UPH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR085WWL
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB734LBR
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 5 minutes

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:minute;

value: ENCBS221ZIM at ENCODE; https://www.encodeproject.org/ENCBS221ZIM/


title: TF ChIP-seq from K562 (ENCLB937GAZ)

description:
https://www.encodeproject.org/experiments/ENCSR125YGM/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ID3 ChIP-seq on human K562
experiment encode accession: ENCSR125YGM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR766WPH
encode release date: 2021-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB937GAZ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: 53 year

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS494ERN at ENCODE; https://www.encodeproject.org/ENCBS494ERN/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB120EBD)

description:
https://www.encodeproject.org/experiments/ENCSR099MNR/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF75A ChIP-seq on human K562
experiment encode accession: ENCSR099MNR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730EDP, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB120EBD
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF75A

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF75A.

value: adult

value: Kevin White

value: ENCBS425FVT at ENCODE; https://www.encodeproject.org/ENCBS425FVT/


title: TF ChIP-seq from A549 (ENCLB427AJF)

description:
https://www.encodeproject.org/experiments/ENCSR110UPH/
***************
biological replicate number: 1
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 mins.
experiment encode accession: ENCSR110UPH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR085WWL
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB427AJF
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: male

value: 58 year

value: Tim Reddy, Duke

value: ENCBS477GCU at ENCODE; https://www.encodeproject.org/ENCBS477GCU/


title: TF ChIP-seq from SK-N-SH (ENCLB349DBM)

description:
https://www.encodeproject.org/experiments/ENCSR106GVM/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-SNAI2 ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR106GVM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR245JGC, ENCSR197JBL
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB349DBM
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting SNAI2 treated with 6uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: cell line

value: female

value: child

value: 4 year

value: Michael Snyder

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS825WRZ at ENCODE; https://www.encodeproject.org/ENCBS825WRZ/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: TF ChIP-seq from A549 (ENCLB632KBK)

description:
https://www.encodeproject.org/experiments/ENCSR716SJK/
***************
biological replicate number: 2
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 15 mins.
experiment encode accession: ENCSR716SJK
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR212FST
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB632KBK
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 15 minutes

value: adult

value: ATCC

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:15; duration_units:minute;

value: ENCBS404RGH at ENCODE; https://www.encodeproject.org/ENCBS404RGH/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from A549 (ENCLB845LHJ)

description:
https://www.encodeproject.org/experiments/ENCSR628MQN/
***************
biological replicate number: 2
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 20 mins.
experiment encode accession: ENCSR628MQN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR324VMZ
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB845LHJ
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: male

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:20; duration_units:minute;

value: ENCBS605JHD at ENCODE; https://www.encodeproject.org/ENCBS605JHD/


title: TF ChIP-seq from K562 (ENCLB500WZE)

description:
https://www.encodeproject.org/experiments/ENCSR099MNR/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF75A ChIP-seq on human K562
experiment encode accession: ENCSR099MNR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730EDP, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB500WZE
size range: 450-650

value: cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF75A.

value: female

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: chronic myelogenous leukemia (CML)

value: ENCBS123NEI at ENCODE; https://www.encodeproject.org/ENCBS123NEI/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from A549 (ENCLB369QJQ)

description:
https://www.encodeproject.org/experiments/ENCSR070VXO/
***************
biological replicate number: 3
technical replicate number: 1
description: GR ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 25 mins.
experiment encode accession: ENCSR070VXO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR344CSQ
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB369QJQ
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 25 minutes

value: adult

value: ATCC

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:25; duration_units:minute;

value: ENCBS620RNZ at ENCODE; https://www.encodeproject.org/ENCBS620RNZ/


title: TF ChIP-seq from SK-N-SH (ENCLB054QKH)

description:
https://www.encodeproject.org/experiments/ENCSR106GVM/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-SNAI2 ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR106GVM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR245JGC, ENCSR197JBL
encode release date: 2020-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB054QKH
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: SK-N-SH

value: child

value: 4 year

value: Michael Snyder

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS483BGQ at ENCODE; https://www.encodeproject.org/ENCBS483BGQ/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: TF ChIP-seq from A549 (ENCLB269MUF)

description:
https://www.encodeproject.org/experiments/ENCSR110UPH/
***************
biological replicate number: 3
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 mins.
experiment encode accession: ENCSR110UPH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR085WWL
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB269MUF
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: cell line

value: male

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:minute;

value: ENCBS242SAZ at ENCODE; https://www.encodeproject.org/ENCBS242SAZ/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Histone ChIP-seq from WERI-Rb-1 (ENCLB478AWX)

description:
https://www.encodeproject.org/experiments/ENCSR614NUF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on human WERI-Rb-1
experiment encode accession: ENCSR614NUF
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR723FET
encode release date: 2021-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB478AWX
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens WERI-Rb-1 cell line

value: female

value: retinoblastoma

value: 1 year

value: Michael Snyder, Stanford

value: ATCC

value: ENCBS176OOK at ENCODE; https://www.encodeproject.org/ENCBS176OOK/

value: Derived from ENCODE donor ENCDO000ADT; https://www.encodeproject.org/ENCDO000ADT/


title: Histone ChIP-seq from WERI-Rb-1 (ENCLB895XEP)

description:
https://www.encodeproject.org/experiments/ENCSR614NUF/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on human WERI-Rb-1
experiment encode accession: ENCSR614NUF
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR723FET
encode release date: 2021-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB895XEP
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: child

value: ENCBS161OJA at ENCODE; https://www.encodeproject.org/ENCBS161OJA/


title: TF ChIP-seq from A549 (ENCLB122KAX)

description:
https://www.encodeproject.org/experiments/ENCSR070VXO/
***************
biological replicate number: 1
technical replicate number: 1
description: GR ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 25 mins.
experiment encode accession: ENCSR070VXO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR344CSQ
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB122KAX
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:25; duration_units:minute;

value: ENCBS983ZXV at ENCODE; https://www.encodeproject.org/ENCBS983ZXV/


title: TF ChIP-seq from A549 (ENCLB615BJI)

description:
https://www.encodeproject.org/experiments/ENCSR628MQN/
***************
biological replicate number: 3
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 20 mins.
experiment encode accession: ENCSR628MQN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR324VMZ
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB615BJI
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: cell line

value: male

value: 58 year

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:20; duration_units:minute;

value: ENCBS663MZB at ENCODE; https://www.encodeproject.org/ENCBS663MZB/


title: TF ChIP-seq from A549 (ENCLB167YUZ)

description:
https://www.encodeproject.org/experiments/ENCSR070VXO/
***************
biological replicate number: 2
technical replicate number: 1
description: GR ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 25 mins.
experiment encode accession: ENCSR070VXO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR344CSQ
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB167YUZ
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: ENCBS681NJX at ENCODE; https://www.encodeproject.org/ENCBS681NJX/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: total RNA-seq from WTC11 (ENCLB584BKW)

description:
https://www.encodeproject.org/experiments/ENCSR166IFS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR166IFS
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-02-01
lab: Yin Shen, UCSF
library encode accession: ENCLB584BKW

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS145ZSF at ENCODE; https://www.encodeproject.org/ENCBS145ZSF/

value: Derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: TF ChIP-seq from A549 (ENCLB595GNM)

description:
https://www.encodeproject.org/experiments/ENCSR044IFH/
***************
biological replicate number: 1
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 25 mins.
experiment encode accession: ENCSR044IFH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR344CSQ
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB595GNM
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ATCC

value: ENCBS461AUZ at ENCODE; https://www.encodeproject.org/ENCBS461AUZ/


title: TF ChIP-seq from A549 (ENCLB524BZC)

description:
https://www.encodeproject.org/experiments/ENCSR604CKQ/
***************
biological replicate number: 3
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 25 mins.
experiment encode accession: ENCSR604CKQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR344CSQ
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB524BZC
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:25; duration_units:minute;

value: ENCBS711SCS at ENCODE; https://www.encodeproject.org/ENCBS711SCS/


title: TF ChIP-seq from A549 (ENCLB375PQU)

description:
https://www.encodeproject.org/experiments/ENCSR604CKQ/
***************
biological replicate number: 2
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 25 mins.
experiment encode accession: ENCSR604CKQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR344CSQ
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB375PQU
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: cell line

value: male

value: 58 year

value: ENCBS581PSW at ENCODE; https://www.encodeproject.org/ENCBS581PSW/


title: TF ChIP-seq from A549 (ENCLB807NVC)

description:
https://www.encodeproject.org/experiments/ENCSR604CKQ/
***************
biological replicate number: 1
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 25 mins.
experiment encode accession: ENCSR604CKQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR344CSQ
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB807NVC
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: ENCBS675GRD at ENCODE; https://www.encodeproject.org/ENCBS675GRD/


title: TF ChIP-seq from SK-N-SH (ENCLB314ZOO)

description:
https://www.encodeproject.org/experiments/ENCSR602QEJ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-PPARA ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR602QEJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR618JZG, ENCSR451BHD
encode release date: 2020-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB314ZOO
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting PPARA treated with 6uM all-trans-retinoic acid for 48 hours

value: PPARA

value: SK-N-SH

value: female

value: child

value: 4 year

value: Michael Snyder, Stanford

value: Michael Snyder

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS062KGP at ENCODE; https://www.encodeproject.org/ENCBS062KGP/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: TF ChIP-seq from SK-N-SH (ENCLB813CGY)

description:
https://www.encodeproject.org/experiments/ENCSR602QEJ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-PPARA ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR602QEJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR618JZG, ENCSR451BHD
encode release date: 2020-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB813CGY
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: ENCBS055BET at ENCODE; https://www.encodeproject.org/ENCBS055BET/


title: TF ChIP-seq from A549 (ENCLB735HYS)

description:
https://www.encodeproject.org/experiments/ENCSR044IFH/
***************
biological replicate number: 2
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 25 mins.
experiment encode accession: ENCSR044IFH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR344CSQ
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB735HYS
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: adult

value: 58 year

value: ATCC

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:25; duration_units:minute;

value: ENCBS212WQT at ENCODE; https://www.encodeproject.org/ENCBS212WQT/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from A549 (ENCLB321CTX)

description:
https://www.encodeproject.org/experiments/ENCSR044IFH/
***************
biological replicate number: 3
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 25 mins.
experiment encode accession: ENCSR044IFH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR344CSQ
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB321CTX
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: ENCBS562TBY at ENCODE; https://www.encodeproject.org/ENCBS562TBY/


title: TF ChIP-seq from foreskin keratinocyte (ENCLB485MAN)

description:
https://www.encodeproject.org/experiments/ENCSR036EGV/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on primary keratinocytes in day 3 of differentiation
experiment encode accession: ENCSR036EGV
assay title: TF ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR488AHQ
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB485MAN

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 days

value: CTCF

value: foreskin keratinocyte

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 3.0

value: newborn

value: 2-4 day

value: Paul Khavari, Stanford

value: Paul Khavari

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:2.5; duration_units:day;

value: Healthy

value: ENCBS079LRU at ENCODE; https://www.encodeproject.org/ENCBS079LRU/

value: Derived from ENCODE donor ENCDO615NVN; https://www.encodeproject.org/ENCDO615NVN/


title: TF ChIP-seq from A549 (ENCLB665IQK)

description:
https://www.encodeproject.org/experiments/ENCSR602BTS/
***************
biological replicate number: 2
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 mins.
experiment encode accession: ENCSR602BTS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR085WWL
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB665IQK
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: cell line

value: male

value: adult

value: 58 year

value: ATCC

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:minute;

value: ENCBS407XHO at ENCODE; https://www.encodeproject.org/ENCBS407XHO/


title: TF ChIP-seq from foreskin keratinocyte (ENCLB677WIK)

description:
https://www.encodeproject.org/experiments/ENCSR036EGV/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on primary keratinocytes in day 3 of differentiation
experiment encode accession: ENCSR036EGV
assay title: TF ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR488AHQ
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB677WIK

value: CTCF

value: foreskin keratinocyte

value: primary cell

value: ENCBS299ONK at ENCODE; https://www.encodeproject.org/ENCBS299ONK/

value: Derived from ENCODE donor ENCDO005EGE; https://www.encodeproject.org/ENCDO005EGE/


title: TF ChIP-seq from A549 (ENCLB991OZW)

description:
https://www.encodeproject.org/experiments/ENCSR602BTS/
***************
biological replicate number: 3
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 mins.
experiment encode accession: ENCSR602BTS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR085WWL
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB991OZW
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: ENCBS942FEE at ENCODE; https://www.encodeproject.org/ENCBS942FEE/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: total RNA-seq from excitatory neuron (ENCLB985AXA)

description:
https://www.encodeproject.org/experiments/ENCSR595YCU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR595YCU
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-30
lab: Yin Shen, UCSF
library encode accession: ENCLB985AXA
size range: >200

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens male adult (30 years) excitatory neuron in vitro differentiated cells genetically modified (insertion) using TALEN originated from WTC11

value: excitatory neuron

value: in vitro differentiated cells

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS881GKT at ENCODE; https://www.encodeproject.org/ENCBS881GKT/

value: Derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: total RNA-seq from excitatory neuron (ENCLB161HMR)

description:
https://www.encodeproject.org/experiments/ENCSR595YCU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR595YCU
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-30
lab: Yin Shen, UCSF
library encode accession: ENCLB161HMR
size range: >200
instrument models: Illumina HiSeq 4000,Illumina NovaSeq 6000

value: male

value: adult

value: ENCBS398YDQ at ENCODE; https://www.encodeproject.org/ENCBS398YDQ/


title: TF ChIP-seq from A549 (ENCLB212FUY)

description:
https://www.encodeproject.org/experiments/ENCSR602BTS/
***************
biological replicate number: 1
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 mins.
experiment encode accession: ENCSR602BTS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR085WWL
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB212FUY
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: cell line

value: 58 year

value: ATCC

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:minute;

value: ENCBS689NRV at ENCODE; https://www.encodeproject.org/ENCBS689NRV/


title: TF ChIP-seq from K562 (ENCLB437FPE)

description:
https://www.encodeproject.org/experiments/ENCSR590FLL/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF347 ChIP-seq on human K562
experiment encode accession: ENCSR590FLL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR822AWY, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB437FPE
size range: 450-650

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting ZNF347

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF347.

value: female

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: chronic myelogenous leukemia (CML)

value: ENCBS992LHH at ENCODE; https://www.encodeproject.org/ENCBS992LHH/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from SK-N-SH (ENCLB058LIH)

description:
https://www.encodeproject.org/experiments/ENCSR581GUY/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZFP3 ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR581GUY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR823HRT, ENCSR349JRD
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB058LIH
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting ZFP3 treated with 6uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: child

value: 4 year

value: Michael Snyder

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS792ZHS at ENCODE; https://www.encodeproject.org/ENCBS792ZHS/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: TF ChIP-seq from SK-N-SH (ENCLB648IZO)

description:
https://www.encodeproject.org/experiments/ENCSR581GUY/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZFP3 ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR581GUY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR823HRT, ENCSR349JRD
encode release date: 2020-06-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB648IZO
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: cell line

value: ENCBS639AKM at ENCODE; https://www.encodeproject.org/ENCBS639AKM/


title: Histone ChIP-seq from A549 (ENCLB314FTV)

description:
https://www.encodeproject.org/experiments/ENCSR027BPE/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K27ac ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 mins.
experiment encode accession: ENCSR027BPE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR204GMP
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB314FTV
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 10 minutes

value: male

value: adult

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:10; duration_units:minute;

value: ENCBS777YGA at ENCODE; https://www.encodeproject.org/ENCBS777YGA/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TF ChIP-seq from SK-N-SH (ENCLB963KPZ)

description:
https://www.encodeproject.org/experiments/ENCSR023KKB/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ESRRG ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR023KKB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042UCB, ENCSR594IZZ
encode release date: 2021-01-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB963KPZ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting ESRRG treated with 6uM all-trans-retinoic acid for 48 hours

value: ESRRG

value: SK-N-SH

value: female

value: child

value: Michael Snyder, Stanford

value: ENCBS182MNE at ENCODE; https://www.encodeproject.org/ENCBS182MNE/


title: TF ChIP-seq from SK-N-SH (ENCLB195OCZ)

description:
https://www.encodeproject.org/experiments/ENCSR023KKB/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ESRRG ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR023KKB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042UCB, ENCSR594IZZ
encode release date: 2021-01-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB195OCZ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: 4 year

value: Michael Snyder

value: Metastatic neuroblastoma from bone marrow

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS286CXH at ENCODE; https://www.encodeproject.org/ENCBS286CXH/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: TF ChIP-seq from A549 (ENCLB754RHL)

description:
https://www.encodeproject.org/experiments/ENCSR022WVP/
***************
biological replicate number: 2
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 mins.
experiment encode accession: ENCSR022WVP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR204GMP
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB754RHL
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: cell line

value: male

value: adult

value: 58 year

value: Tim Reddy, Duke

value: ENCBS998DSH at ENCODE; https://www.encodeproject.org/ENCBS998DSH/


title: TF ChIP-seq from K562 (ENCLB767BAW)

description:
https://www.encodeproject.org/experiments/ENCSR590FLL/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF347 ChIP-seq on human K562
experiment encode accession: ENCSR590FLL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR822AWY, ENCSR328FYU
encode release date: 2020-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB767BAW
size range: 450-650

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF347.

value: female

value: 53 year

value: Kevin White

value: chronic myelogenous leukemia (CML)

value: ENCBS079ALI at ENCODE; https://www.encodeproject.org/ENCBS079ALI/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from A549 (ENCLB900XJY)

description:
https://www.encodeproject.org/experiments/ENCSR022WVP/
***************
biological replicate number: 1
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 mins.
experiment encode accession: ENCSR022WVP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR204GMP
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB900XJY
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ATCC

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:10; duration_units:minute;

value: ENCBS491KZL at ENCODE; https://www.encodeproject.org/ENCBS491KZL/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Histone ChIP-seq from RWPE2 (ENCLB669BUK)

description:
https://www.encodeproject.org/experiments/ENCSR297ONS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on human RWPE2
experiment encode accession: ENCSR297ONS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR753IXW
encode release date: 2021-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB669BUK
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens RWPE2 cell line

value: cell line

value: unknown

value: John Stamatoyannopoulos, UW

value: ENCBS314QIO at ENCODE; https://www.encodeproject.org/ENCBS314QIO/

value: Derived from ENCODE donor ENCDO135ZNV; https://www.encodeproject.org/ENCDO135ZNV/


title: TF ChIP-seq from K562 (ENCLB691QMB)

description:
https://www.encodeproject.org/experiments/ENCSR008DOU/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-SNAPC5 ChIP-seq on human K562
experiment encode accession: ENCSR008DOU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR766WPH
encode release date: 2021-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB691QMB
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting SNAPC5

value: adult

value: Michael Snyder, Stanford

value: ENCBS742XDN at ENCODE; https://www.encodeproject.org/ENCBS742XDN/


title: TF ChIP-seq from A549 (ENCLB570USV)

description:
https://www.encodeproject.org/experiments/ENCSR022WVP/
***************
biological replicate number: 3
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 mins.
experiment encode accession: ENCSR022WVP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR204GMP
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB570USV
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: male

value: 58 year

value: Tim Reddy, Duke

value: ENCBS049TTA at ENCODE; https://www.encodeproject.org/ENCBS049TTA/


title: total RNA-seq from heart right ventricle (ENCLB518CIF)

description:
https://www.encodeproject.org/experiments/ENCSR997KDB/
***************
biological replicate number: 1
technical replicate number: 1
description: w73_heart_right_ventricle
experiment encode accession: ENCSR997KDB
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB518CIF
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens female adult (59 years) heart right ventricle tissue, preserved by flash-freezing

extract_protocol:
extraction method: Animal tissue kit (Norgen Biotek cat#: 25700)
extraction protocol: https://www.encodeproject.org/documents/33482357-bcb8-43d0-ac76-d58ff785b710/@@download/attachment/Norgen_Animal-Tissue-RNA-Purification-Kit-Insert-PI25700-8-M14.pdf, general protocol: https://www.encodeproject.org/documents/01a7807d-0d18-4a4a-ac90-f4056a25a681/@@download/attachment/manualE7760_Directional_RNA_library_kit_October30_2018.pdf

value: heart right ventricle

value: tissue

value: female

value: 59 year

value: Yiing Lin, MD, PhD

value: DM:yes; HTN:yes; CAD:no

value: ENCBS789UUH at ENCODE; https://www.encodeproject.org/ENCBS789UUH/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Histone ChIP-seq from fibroblast of lung (ENCLB051ILC)

description:
https://www.encodeproject.org/experiments/ENCSR915QOL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR915QOL
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000AMZ
encode release date: 2016-11-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB051ILC
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens female child (11 years) fibroblast of lung primary cell

value: fibroblast of lung

value: primary cell

value: child

value: 11 year

value: Bradley Bernstein, Broad

value: Lonza

value: ENCBS149EDI at ENCODE; https://www.encodeproject.org/ENCBS149EDI/

value: Derived from ENCODE donor ENCDO156MSV; https://www.encodeproject.org/ENCDO156MSV/


title: Histone ChIP-seq from fibroblast of lung (ENCLB713YOY)

description:
https://www.encodeproject.org/experiments/ENCSR915QOL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR915QOL
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000AMZ
encode release date: 2016-11-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB713YOY
fragmentation methods: none
size range: 200-600
nucleic acid starting quantity: 80
nucleic acid starting quantity units: ng

source_name: Homo sapiens male adult (45 years) fibroblast of lung primary cell

value: lung fibroblasts

value: male

value: adult

value: 45 year

value: unknown

value: ENCBS339AAA at ENCODE; https://www.encodeproject.org/ENCBS339AAA/

value: Derived from ENCODE donor ENCDO269AAA; https://www.encodeproject.org/ENCDO269AAA/


title: total RNA-seq from heart left ventricle (ENCLB961HOZ)

description:
https://www.encodeproject.org/experiments/ENCSR924MSZ/
***************
biological replicate number: 1
technical replicate number: 1
description: w76_heart_left_ventricle
experiment encode accession: ENCSR924MSZ
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB961HOZ
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens male adult (40 years) heart left ventricle tissue, preserved by flash-freezing

value: heart left ventricle

value: tissue

value: 40 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: DM:no; HTN:yes; CAD:no

value: ENCBS756BZF at ENCODE; https://www.encodeproject.org/ENCBS756BZF/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: total RNA-seq from H1 (ENCLB479PKD)

description:
https://www.encodeproject.org/experiments/ENCSR895ZTB/
***************
biological replicate number: 2
technical replicate number: 1
description: h1_hesc
experiment encode accession: ENCSR895ZTB
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB479PKD
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens H1 cell line, preserved by flash-freezing

value: cell line

value: embryonic

value: Job Dekker, UMass

value: René Maehr

value: healthy

value: ENCBS287SWH at ENCODE; https://www.encodeproject.org/ENCBS287SWH/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: total RNA-seq from heart right ventricle (ENCLB532HIN)

description:
https://www.encodeproject.org/experiments/ENCSR915EBZ/
***************
biological replicate number: 1
technical replicate number: 1
description: w76_heart_right_ventricle
experiment encode accession: ENCSR915EBZ
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB532HIN
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens male adult (40 years) heart right ventricle tissue, preserved by flash-freezing

value: heart right ventricle

value: male

value: adult

value: ENCBS632QXG at ENCODE; https://www.encodeproject.org/ENCBS632QXG/


title: total RNA-seq from H1 (ENCLB619SMO)

description:
https://www.encodeproject.org/experiments/ENCSR895ZTB/
***************
biological replicate number: 1
technical replicate number: 1
description: h1_hesc
experiment encode accession: ENCSR895ZTB
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB619SMO
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

value: unknown

value: ENCBS584QDY at ENCODE; https://www.encodeproject.org/ENCBS584QDY/


title: total RNA-seq from kidney (ENCLB768WIQ)

description:
https://www.encodeproject.org/experiments/ENCSR892LBU/
***************
biological replicate number: 1
technical replicate number: 1
description: w71_kidney
experiment encode accession: ENCSR892LBU
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB768WIQ
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens female adult (47 years) kidney tissue, preserved by flash-freezing

value: kidney

value: tissue

value: female

value: 47 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: DM:yes; HTN:yes; CAD:no

value: ENCBS305JCM at ENCODE; https://www.encodeproject.org/ENCBS305JCM/

value: Derived from ENCODE donor ENCDO528BHB; https://www.encodeproject.org/ENCDO528BHB/


title: total RNA-seq from excitatory neuron (ENCLB780RMI)

description:
https://www.encodeproject.org/experiments/ENCSR877FRY/
***************
biological replicate number: 1
technical replicate number: 1
description: pgp1_excitatory_cortical_neuron
experiment encode accession: ENCSR877FRY
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-03-09
lab: Barbara Wold, Caltech
library encode accession: ENCLB780RMI
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens male adult (53 years) excitatory neuron in vitro differentiated cells, preserved by cryopreservation

value: excitatory neuron

value: in vitro differentiated cells

value: PGP1 derived excitatory cortical neurons

value: 53 year

value: Bradley Bernstein, Broad

value: George Church

value: ENCBS932EVS at ENCODE; https://www.encodeproject.org/ENCBS932EVS/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Histone ChIP-seq from A549 (ENCLB301FSU)

description:
https://www.encodeproject.org/experiments/ENCSR027BPE/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 mins.
experiment encode accession: ENCSR027BPE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR204GMP
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB301FSU
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: cell line

value: male

value: adult

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:10; duration_units:minute;

value: ENCBS287PYF at ENCODE; https://www.encodeproject.org/ENCBS287PYF/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: total RNA-seq from excitatory neuron (ENCLB777WAL)

description:
https://www.encodeproject.org/experiments/ENCSR877FRY/
***************
biological replicate number: 1
technical replicate number: 2
description: pgp1_excitatory_cortical_neuron
experiment encode accession: ENCSR877FRY
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-03-09
lab: Barbara Wold, Caltech
library encode accession: ENCLB777WAL
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

value: excitatory neuron


title: Histone ChIP-seq from A549 (ENCLB577BAE)

description:
https://www.encodeproject.org/experiments/ENCSR027BPE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 mins.
experiment encode accession: ENCSR027BPE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR204GMP
encode release date: 2017-10-19
lab: Tim Reddy, Duke
library encode accession: ENCLB577BAE
fragmentation methods: sonication (Bioruptor Twin)
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS653LWC at ENCODE; https://www.encodeproject.org/ENCBS653LWC/


title: total RNA-seq from lower lobe of left lung (ENCLB429LAS)

description:
https://www.encodeproject.org/experiments/ENCSR448BTT/
***************
biological replicate number: 1
technical replicate number: 1
description: w78_left_lobe_of_lung
experiment encode accession: ENCSR448BTT
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB429LAS
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens male adult (60 years) lower lobe of left lung tissue, preserved by flash-freezing

value: lower lobe of left lung

value: tissue

value: 60 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: ENCBS559YLX at ENCODE; https://www.encodeproject.org/ENCBS559YLX/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: total RNA-seq from right cardiac atrium (ENCLB456OEV)

description:
https://www.encodeproject.org/experiments/ENCSR853TXT/
***************
biological replicate number: 1
technical replicate number: 1
description: w78_right_cardiac_atrium
experiment encode accession: ENCSR853TXT
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB456OEV
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens male adult (60 years) right cardiac atrium tissue, preserved by flash-freezing

value: right cardiac atrium

value: male

value: adult

value: ENCBS271WJL at ENCODE; https://www.encodeproject.org/ENCBS271WJL/


title: total RNA-seq from right cardiac atrium (ENCLB407TXN)

description:
https://www.encodeproject.org/experiments/ENCSR867WQC/
***************
biological replicate number: 1
technical replicate number: 1
description: w76_right_cardiac_atrium
experiment encode accession: ENCSR867WQC
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB407TXN
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens male adult (40 years) right cardiac atrium tissue, preserved by flash-freezing

value: 40 year

value: DM:no; HTN:yes; CAD:no

value: ENCBS966NKN at ENCODE; https://www.encodeproject.org/ENCBS966NKN/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: Histone ChIP-seq from SU-DHL-6 (ENCLB041PKK)

description:
https://www.encodeproject.org/experiments/ENCSR471VHW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR471VHW
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR179YLS
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB041PKK
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens SUDHL6 immortalized cell line

value: cell line

value: also called SU-DHL-6 (diffuse histiocytic lymphoma) - disease:large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma; ATCC CRL-2959

value: 43 year

value: Bradley Bernstein, Broad

value: ENCBS136LHJ at ENCODE; https://www.encodeproject.org/ENCBS136LHJ/

value: Derived from ENCODE donor ENCDO353AAA; https://www.encodeproject.org/ENCDO353AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_2206; http://web.expasy.org/cellosaurus/CVCL_2206


title: total RNA-seq from mesenteric fat pad (ENCLB326WAQ)

description:
https://www.encodeproject.org/experiments/ENCSR838XNO/
***************
biological replicate number: 1
technical replicate number: 1
description: w73_mesenteric_fat_pad
experiment encode accession: ENCSR838XNO
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB326WAQ
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens female adult (59 years) mesenteric fat pad tissue, preserved by flash-freezing

value: mesenteric fat pad

value: tissue

value: female

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: DM:yes; HTN:yes; CAD:no

value: ENCBS232CCX at ENCODE; https://www.encodeproject.org/ENCBS232CCX/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: total RNA-seq from endothelial cell (ENCLB550VNE)

description:
https://www.encodeproject.org/experiments/ENCSR429EGC/
***************
biological replicate number: 1
technical replicate number: 1
description: pgp1_derived_endothelial_cells
experiment encode accession: ENCSR429EGC
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-03-09
lab: Barbara Wold, Caltech
library encode accession: ENCLB550VNE
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens male adult (53 years) endothelial in vitro differentiated cells, preserved by cryopreservation

value: endothelial cell

value: in vitro differentiated cells

value: PGP1 derived endothelial cells

value: male

value: adult

value: 53 year

value: George Church

value: ENCBS239VAD at ENCODE; https://www.encodeproject.org/ENCBS239VAD/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Histone ChIP-seq from lower leg skin (ENCLB058EIJ)

description:
https://www.encodeproject.org/experiments/ENCSR432GOP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR432GOP
assay title: Histone ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR010HMS
encode release date: 2017-01-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB058EIJ
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 6
nucleic acid starting quantity units: ng

source_name: Homo sapiens male adult (37 years) lower leg skin tissue

value: lower leg skin

value: tissue

value: EnTEX:Skin - Sun Exposed (Lower leg)

value: 37 year

value: Bradley Bernstein, Broad

value: Kristin Ardlie

value: ENCBS851XJZ at ENCODE; https://www.encodeproject.org/ENCBS851XJZ/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: total RNA-seq from left cardiac atrium (ENCLB996WBW)

description:
https://www.encodeproject.org/experiments/ENCSR993IPO/
***************
biological replicate number: 1
technical replicate number: 1
description: w78_left_cardiac_atrium
experiment encode accession: ENCSR993IPO
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB996WBW
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens male adult (60 years) left cardiac atrium tissue, preserved by flash-freezing

value: left cardiac atrium

value: 60 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: ENCBS401TMR at ENCODE; https://www.encodeproject.org/ENCBS401TMR/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: total RNA-seq from heart left ventricle (ENCLB879PZL)

description:
https://www.encodeproject.org/experiments/ENCSR837VMK/
***************
biological replicate number: 1
technical replicate number: 1
description: w72_left_ventricle
experiment encode accession: ENCSR837VMK
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB879PZL
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens female adult (46 years) heart left ventricle tissue, preserved by flash-freezing

value: heart left ventricle

value: female

value: adult

value: 46 year

value: DM:no; HTN:no; CAD:no

value: ENCBS914REQ at ENCODE; https://www.encodeproject.org/ENCBS914REQ/

value: Derived from ENCODE donor ENCDO411EVD; https://www.encodeproject.org/ENCDO411EVD/


title: total RNA-seq from endothelial cell (ENCLB745EGG)

description:
https://www.encodeproject.org/experiments/ENCSR429EGC/
***************
biological replicate number: 1
technical replicate number: 2
description: pgp1_derived_endothelial_cells
experiment encode accession: ENCSR429EGC
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-03-09
lab: Barbara Wold, Caltech
library encode accession: ENCLB745EGG
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

value: endothelial cell

value: in vitro differentiated cells

value: PGP1 derived endothelial cells

value: male

value: 53 year

value: Bradley Bernstein, Broad

value: George Church

value: ENCBS239VAD at ENCODE; https://www.encodeproject.org/ENCBS239VAD/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: total RNA-seq from pancreas (ENCLB996ZWC)

description:
https://www.encodeproject.org/experiments/ENCSR432EBE/
***************
biological replicate number: 1
technical replicate number: 1
description: w73_pancreas
experiment encode accession: ENCSR432EBE
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB996ZWC
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens female adult (59 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: tissue

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: DM:yes; HTN:yes; CAD:no

value: ENCBS493UHQ at ENCODE; https://www.encodeproject.org/ENCBS493UHQ/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Histone ChIP-seq from lower leg skin (ENCLB409SVW)

description:
https://www.encodeproject.org/experiments/ENCSR432GOP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR432GOP
assay title: Histone ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR010HMS
encode release date: 2017-01-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB409SVW
fragmentation methods: sonication (generic)
size range: 200-600
nucleic acid starting quantity: 2
nucleic acid starting quantity units: ng

value: lower leg skin

value: EnTEX:Skin - Sun Exposed (Lower leg)

value: adult

value: 37 year

value: Kristin Ardlie

value: ENCBS694TAW at ENCODE; https://www.encodeproject.org/ENCBS694TAW/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: total RNA-seq from lower lobe of right lung (ENCLB338PMP)

description:
https://www.encodeproject.org/experiments/ENCSR825UXP/
***************
biological replicate number: 1
technical replicate number: 1
description: w78_lower_lobe_of_right_lung
experiment encode accession: ENCSR825UXP
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB338PMP
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens male adult (60 years) lower lobe of right lung tissue, preserved by flash-freezing

value: lower lobe of right lung

value: male

value: 60 year

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: ENCBS870VUM at ENCODE; https://www.encodeproject.org/ENCBS870VUM/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: total RNA-seq from left lung (ENCLB142OZC)

description:
https://www.encodeproject.org/experiments/ENCSR410MSS/
***************
biological replicate number: 1
technical replicate number: 1
description: w62_left_lung
experiment encode accession: ENCSR410MSS
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB142OZC
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens female child (16 years) left lung tissue, preserved by flash-freezing

value: left lung

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: child

value: 16 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS725WGH at ENCODE; https://www.encodeproject.org/ENCBS725WGH/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: total RNA-seq from osteocyte (ENCLB602PYH)

description:
https://www.encodeproject.org/experiments/ENCSR413QAL/
***************
biological replicate number: 1
technical replicate number: 1
description: H9 derived osteocytes
experiment encode accession: ENCSR413QAL
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB602PYH
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens female embryo (5 days) osteocyte in vitro differentiated cells originated from osteocyte

value: osteocyte

value: in vitro differentiated cells

value: WA09 derived osteocytes

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein, Broad

value: SESCC

value: ENCBS034WOR at ENCODE; https://www.encodeproject.org/ENCBS034WOR/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: total RNA-seq from heart left ventricle (ENCLB220BTD)

description:
https://www.encodeproject.org/experiments/ENCSR900FUP/
***************
biological replicate number: 1
technical replicate number: 1
description: w73_heart_left_ventricle
experiment encode accession: ENCSR900FUP
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB220BTD
fragmentation methods: chemical (NEBNext Ultra II Directional)
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

source_name: Homo sapiens female adult (59 years) heart left ventricle tissue, preserved by flash-freezing

value: heart left ventricle

value: tissue

value: female

value: adult

value: 59 year

value: DM:yes; HTN:yes; CAD:no

value: ENCBS692CKU at ENCODE; https://www.encodeproject.org/ENCBS692CKU/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: total RNA-seq from osteocyte (ENCLB499EXW)

description:
https://www.encodeproject.org/experiments/ENCSR413QAL/
***************
biological replicate number: 2
technical replicate number: 1
description: H9 derived osteocytes
experiment encode accession: ENCSR413QAL
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2021-01-04
lab: Barbara Wold, Caltech
library encode accession: ENCLB499EXW
spikeins used: ERCC spike profile for stranded Ribo reduced libraries 2019 December
nucleic acid starting quantity: 300
nucleic acid starting quantity units: ng

value: osteocyte

value: in vitro differentiated cells

value: ENCBS572IFJ at ENCODE; https://www.encodeproject.org/ENCBS572IFJ/


title: Histone ChIP-seq from gastrocnemius medialis (ENCLB112UVM)

description:
https://www.encodeproject.org/experiments/ENCSR423LXQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR423LXQ
assay title: Histone ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR897RRA
encode release date: 2017-01-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB112UVM
fragmentation methods: sonication (generic)
size range: 200-600

source_name: Homo sapiens gastrocnemius medialis tissue male adult (54 years)

value: gastrocnemius medialis

value: i.e. REMC 6, 13, 14 and 15; EnTEX:Muscle - Skeletal

value: male

value: 54 year

value: ENCBS693QTT at ENCODE; https://www.encodeproject.org/ENCBS693QTT/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/