title: DAY2-PCBP1-SH4

status: Public on Jul 01 2021

city: Philadelphia

first: PAUL

last: JEWELL

state: PA

address: 3451 Walnut Street Philadelphia

department: Biology

institute: Biociphers

data_processing:
QC was performed on the fastq files using FASTQC (version 0.11.9)
Adapter sequences were trimmed using Trim Galore (version 1.46.0)
Trimmed fastqs were aligned using STAR (version 2.5.3a)
Star output bam files were sorted and indexed with samtools (version 1.9)
Salmon (version 0.11.3) was used generate transcriptomic index with the GRCm38 mouse  annotation.
Transcripts per million (TPMs), length scaled TPM, and effective  length quantifications were generated using as input trimmed RNA-Seq fastq files  and the salmon transcriptome indices from the previous step.
MAJIQ and VOILA (v2.0-58dcd79) generated splicing quantifications text files using sorted and indexed bam files from STAR
Genome_build: GRCm38 mouse annotation
Supplementary_files_format_and_content: .quant (These files contain salmon transcriptomic reads per gene), .txt (alternative splicing events definitions and PSI and deltaPSI quantification).

source_name: Fetal Liver primary cells

growth_protocol: E14.5 fetal liver cell suspension was enriched for hematopoietic progenitors using EasySep Hematopoietic Progenitor Cell Enrichment Kit (StemCell Technologies, #19756) supplemented with biotin-conjugated CD71 Ab (BioLegend). The purified hematopoietic progenitor cells were cultured in expansion medium consisting of StemPro34 medium (Invitrogen) supplemented with 2mM l-glutamine, 1% penicillin/streptomycin, 10μM 1-thioglycerol, 1μM dexamethasone, 0.5 U/mL of erythropoietin, and 1% murine SCF).

extract_protocol:
RNAs were extracted using Trizol reagent from Day0 and Day2 cells. Illumina TruSeq RNA Sample Prep Kit was used with 1 ug of total RNA for the construction of sequencing libraries.
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: These purified cells were infected immediately with MSCV-PIG-based (puromycin-IRES-GFP) retroviruses encoding shRNAs that target Pcbp1, Pcbp2, as well as two sets of control shRNAs; Luciferase and scrambled sequence.  The transduced cells were grown in expansion medium for 48 hours. These cells were collected (‘Day 0’ cells), or washed and resuspended in differentiation medium (IMDM with 10% FCS, 10% PDS, 2mM l-glutamine, 10μM 1-thioglycerol, 1% penicillin/streptomycin, 5% PFHM-II medium, and 5 U/mL of erythropoietin (Amgen) and incubated for an additional 2 days (‘Day 2’ cells).

tag: strain

value: Fetal Liver primary cells

tag: knockdown target

tag: day


title: DAY2-PCBP2-SH1

type: SRA

country: USA

library_source: transcriptomic

molecule: total RNA

organism: Mus musculus

tag: cell type

tag: developmental stage


title: DAY2-PCBP1-SH1


title: WT_RPS2_STAMP [10X]

status: Public on Jul 02 2021

city: La Jolla

first: Gene

last: Yeo

state: CA

address: 2880 Torrey Pines Scenic Dr. Room 3805/Yeo Lab

institute: UCSD

description:
cells dissociated from solid tumor
WT_RPS2_STAMP_S3_L004

data_processing:
10X:
Alignment, cell barcode processing, umis processing, abundance measurements: cellranger count (version 3.0.2)
MD tags were added to alignments with samtools calmd --threads 15 -rb possorted_genome_bam.bam refdata-cellranger-hg19-3.0.0/fasta/genome.fa > possorted_genome_bam_MD.bam
Reads were split based on the CB:Z tag, resulting in one BAM file per barcode.
Edits were called on each "split-BAM" file using SAILOR (http://github.com/yeolab/sailor) using default parameters and dbSNP (v147) to remove known SNPs.
Coverage was generated from filtered BAM files (intermediates from SAILOR) for each cell barcode, using the following commands from BedTools (v2.27.1). :     bedtools genomecov -split -strand - -g refdata-cellranger-hg19-3.0.0/star/chrNameLength.txt -bg -ibam fwd.bam > fwd.bg  bedtools sort -I fwd.bg > fwd.sorted.bg   bedGraphToBigWig fwd.sorted.bg refdata-cellranger-hg19-3.0.0/star/chrNameLength.txt fwd.sorted.bw    bedtools genomecov -split -strand + -g refdata-cellranger-hg19-3.0.0/star/chrNameLength.txt -bg -ibam rev.bam > rev.bg  bedtools sort -I rev.bg > rev.sorted.bg   bedGraphToBigWig rev.sorted.bg refdata-cellranger-hg19-3.0.0/star/chrNameLength.txt rev.sorted.bw
For each barcode, edit sites were annotated across exons (Gencode v19) and the cumulative C>T depth across each gene was divided by the cumulative depth across C's as obtained from the previous step.
Genome_build: hg19
Supplementary_files_format_and_content: 10X: Edit fractions across barcodes with detectable edits were merged to obtain processed STAMP_edits.txt files for each sample.
Supplementary_files_format_and_content: Featurecounts file for RNA-seq samples

organism: Homo sapiens

growth_protocol: MDA-MB-231-LM2 cells were cultured in DMEM + 10% FBS. Cells were split every 3-4 days. For 10X experiments cells were subcutaneously injected in the flank of mice and grown for 6 weeks before tumor dissociation and 10X library preparation.

extract_protocol:
10X Chromium Single Cell 3' polyA v3 Chemistry
10X Chromium Single Cell 3' polyA and feature capture v3 Chemistry

treatment_protocol: Mice were maintained on 5% sucrose water with 2mg/mL Doxycycline for 3 days before tumor extraction and dissociation.

tag: treatment

value: Doxycycline

tag: cell culture

value: DMEM + 10% FBS


title: PIWIL1hetero - smRNA-seq_rep2

city: Tokyo

first: Yuka

middle: W.

last: Iwasaki

address: 35 Shinanomachi, Shinjuku-ku,

department: Department of Molecular Biology

country: Japan

institute: Keio University School of Medicine

data_processing:
small-RNA-seq: The adapter sequence and 4nt random sequences at 3’ and 5’ ends were removed cutadapt v1.14. A quality filter of 30 was adopted by removing sequences below this threshold. Reads at the range of 10 ~ 40nt after adapter-removal were used for further analysis. Reads were mapped to the hamster reference genome (hamster.sequel.draft-20200302.arrow.fasta; 3) using Bowtie (v1.1.1), permitting 0 mismatches, and genome-mapped reads were used for further analysis. Genome mapped reads were compared between replicate samples and combined due to their high reproducibility. Reads were further mapped to tRNA, rRNA, sn/snoRNA, and miRNA. The read count mapped to miRNAs were used to normalize small RNA reads obtained from heterozygous and homozygous mutants. Read counts mapped to each unique small RNA sequence were compared between heterozygous and homozygous samples, and those with an 4-fold decrease and identical to previously described PIWI-associated piRNAs were extracted as PIWIL1- or PIWIL3-piRNA.
RNA-seq: Low-quality sequence (a quality value lower than 30) and 3nt random sequence was removed using cutadapt software. Mapping to the golden hamster genome (hamster.sequel.draft-20200302.arrow.fasta; 3) was performed using HISAT2 using default parameters. featureCount v2.01 was used to count reads mapped to genes. featureCounts output was further processed using the TCC-GUI version 2019.02.08 using default parameters. The TCC-GUI uses the TMM normalization method, and edgeR is used for the filtering of differentially expressed genes (DEGs).
Bisulfite-seq: Reads were trimmed to remove low quality bases, and were mapped to the golden hamster genome using Bismark v0.20.0. Methylation data at CG and non-CG sites covered with 10-500 reads were extracted for the downstream analyses.
Genome_build: hamster.sequel.draft-20200302.arrow.fasta (newly sequenced genome available under accession number PRJDB10770 in DDBJ)
Supplementary_files_format_and_content: small-RNA-seq: each unique PIWIL1/PIWIL3-piRNA sequence (see reference for the defenition of PIWIL1/PIWIL3-piRNA) with count of obtained reads in tab separated format.
Supplementary_files_format_and_content: RNA-seq: expression level of genes in each samples calculated by using TCC-GUI (TMM normalization method and edgeR is used in TCC), in csv format.
Supplementary_files_format_and_content: Bisulfite-seq: position of CpG (name of scaffold, start position, and end position), methylation ratio, number of methylated CpG, and number on unmethylated CpG in tab separated format.

organism: Mesocricetus auratus

source_name: PIWIL1hetero - smRNA-seq

growth_protocol: Golden hamsters were purchased from Japan SLC and maintained with 14 light and 10 dark cycle. All animal experiments were approved by the Animal Care and Use Committee of the Keio university.

extract_protocol:
Mature females were induced to superovulate by i.p. injection of 40 IU PMSG (ASKA Animal Health) at 1200 to 1400 on the day of conspicuous, postestrus vaginal discharge (day 1 of the estrous cycle). GV oocytes were collected from ovary after 102h PMSG injection. MII oocytes were collected from oviduct after 115h PMSG injection. PN zygotes were collected from oviduct after 91 or 115h PMSG injection followed by mating with male during the night of day4 or 5 (depend on the female estrus cycle).
small-RNA-seq: Total RNAs for small RNA sequence were extracted from MII oocytes of PIWIL1 and PIWIL3 homozygous and heterozygous mutants. The construction of small RNA libraries was performed using NEXTFLEX® Small RNA-Seq Kit v3 (PerkinElmer) with the manufacturer’s instructions.
RNA-seq: Total RNA for RNA-seq were purified from 50 MII oocytes of 2 to 4-month-old golden hamsters using NucleoSpin RNA Plus XS (MACHEREY-NAGEL). RNA-seq libraries were construct using total RNA from MII oocytes and SMART-Seq Stranded Kit (TaKaRa Bio).
Bisulfite-seq: DNA from thirty GV oocytes were spiked with 1% unmethylated lambda phage DNA. Libraries were generated by post bisulfite adaptor tagging method with 8 cycles of library amplification.

treatment_protocol: PIWIL1 and PIWIL3 mutant golden hamster was generated and established using CRISPR/Cas9 system. See reference for details (Hasuwa et al.).

tag: tissue

value: MII oocyte

tag: genotype

value: w/m


title: DAY2-PCBP1-SH3


title: DAY2-PCBP2-SH4


title: P3-AN3_S7

city: Charleston

first: Jeremy

last: Barth

state: SC

address: 173 Ashley Ave, BSB 627

institute: MUSC

data_processing:
Illumina Casava1.8 software used for basecalling.
Sequenced reads (fastq files) were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence
Secondary analysis was carried out using Partek Flow. Alignment was conducted with TopHat2 using mouse genome (mm10) and the default option set
Aligned reads were quantified to annotation model (Partek E/M) using mm10 and RefSeq transcripts 83 (2017-11-01) with the settings: a) strict paired-end compatibility, b) require junction reads to match introns, c) min read overlap with feature 100% of read length, d) min reads 10
Gene counts were analyzed using DESeq2 to determine normalized expression measures and signficant differences (p-adjusted) for all pairwise comparisons among the postnatal samples
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text file of normalized counts and comparison metrics

source_name: auditory nerve

extract_protocol:
Microdissections were performed to isolate the auditory nerve from mouse cochlear structures. Two cochleae from each mouse were pooled for individual samples. Total RNA was purified from each sample using the miRNeasy Mini Kit per the manufacturer’s instructions. Quality of each total RNA isolation was assessed using the Agilent 2100 Bioanalyzer and low-quality samples showing degradation or contamination were excluded.
RNA libraries were prepared for sequencing using standard Illumina protocols using Illumina's TruSeq RNA Library Prep Kit

value: auditory nerve

tag: age

value: postnatal day 3


title: DAY0-LUC-1

description:
DAY0-CONTROL-ALL_DAY0-PCBP1-KD-ALL.txt
DAY0-CONTROL-ALL_DAY0-PCBP2-KD-ALL.txt

value: LUC


title: DAY0-SCR-2

value: scrambled


title: DAY0-PCBP1-SH1


title: DAY0-PCBP1-SH3


title: DAY0-SCR-1


title: DAY0-PCBP2-SH3


title: Basal bulge stem cells (B)

city: Cologne

first: Catherin

last: Niemann

address: Robert-Koch-Str. 21

country: Germany

institute: Center for Molecular Medicine Cologne (CMMC)

data_processing:
A-Seq data were processed through the QuickNGS pipeline according to Wagle et al. 2015 using Ensembl version 87
Reads were mapped to the Mouse genome using Tophat (version 2.0.12) and abundance estimation with Cufflinks (Version 2.1.1).
DESeq2 was used for differential gene expression analysis
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each sample
Supplementary_files_format_and_content: tab-delimited text files include differential gene expression between the bulge populations with a p value < 0.05 and fold change FC≥2

source_name: Epidermis

extract_protocol:
After sacrification, backskin was harvested from 4 mice. Epidermis was separated from dermis after 1h incubation with 0.25 mg/ml thermolysin. Epidermis was minced and cells were filtered. Cells were stained with anti-CD34 and Itga6 conjugated antibodies. 3 populations were sorted via FACS:  CD34- (non-stem cells 'N'), CD34+/Itga6High (basal bulge stem cells 'B'), CD34+/Itga6Low (suprabasal bulge stem cells 'S'). Total RNA was extracted from the cells with Trizol reagent. RNA from 4 mice per FACS sorted cell population (N, B and S) was pooled. Due to low amount of input material, pre-amplification using the Ovation RNASeq System V2 was performed. Total RNA was used for first strand cDNA synthesis using both poly(T) and random primers, followed by second strand synthesis and isothermal strand-displacement amplification.
For library preparation, the Illumina Nextera XT DNA sample preparation protocol was used with 1 ng cDNA input. After validation (Agilent 2200 TapeStation) and quantification (Invitrogen Qubit System) all transcriptome libraries were pooled. The pool was quantified using the Peqlab KAPA Library Quantification Kit and the Applied Biosystems 7900HT Sequence Detection and sequenced on an Illumina HiSeq4000 sequencing instrument with a 2x75bp paired-end read length.

value: Epidermis

value: 7-week old

value: wild type


title: DAY0-PCBP1-SH4


title: DAY0-PCBP2-SH1


title: Non-stem cells (N)


title: DAY2-PCBP2-SH3


title: D80SV2

city: Geneva

first: Celine

last: Delucinge

address: 1 rue Michel Servet

department: iGE3 Genomics Platform

country: Switzerland

institute: University of Geneva

data_processing:
Illumina Casava2.2 software used for basecalling.
Sequenced reads were mapped to mm10 whole genome using STAR v2.5.3a with default parameters
Raw counts are produced by htseq-count (HTSeq v.0.9.1)
Normalization and differential expression analysis were performed with edgeR v.3.16.5
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text files include rawcount values for each Sample …
Supplementary_files_format_and_content: tab-delimited text files include normalized expression values(cpm = count per millions) for each Sample …

source_name: Bulk pylorus tissue

extract_protocol:
Freshly collected pylori were homogenized and RNA extracted with RNase® Plus Mini kit (Qiagen), and RNA concentration was measured with a Qubit fluorimeter (Life Technologies) and RNA integrity assessed with a Bioanalyzer (Agilent Technologies)
RNA libraries were prepared for sequencing using Illumina TruSeqHT stranded mRNA kit

value: CEA424-SV40 T Ag


title: D60SV2


title: D80SV1


title: D60SV3


title: DAY2-LUC-1

description:
DAY2-CONTROL-ALL_DAY2-PCBP1-KD-ALL.txt
DAY2-CONTROL-ALL_DAY2-PCBP2-KD-ALL.txt


title: DAY2-SCR-2


title: DAY0-PCBP2-SH4


title: D60SV1


title: DAY2-SCR-1


title: D80WT3

value: wild-type


title: D60WT1


title: D80WT2


title: D60WT2


title: Suprabasal bulge stem cells (S)


title: RNA-seq_IP_CDAHFD_Control_10113

city: Odense M

first: Anne

last: Loft

address: Campusvej 55

department: Biochemistry & Molecular Biology

country: Denmark

institute: University of Southern Denmark

description:
IP'ed nuclei from HEP-INTACT mice
Un_norm_Counts_RNA_seq.txt
RNA_seq_Log2FC_FPC_CDA_Ctrl.txt

data_processing:
The STAR aligner (v 2.4.2a) (Dobin et al., 2013) with modified parameter settings (--twopassMode=Basic) was used for split-read alignment against the mouse genome assembly mm10 and UCSC knownGene annotation.
Quantification of the number of mapped reads of each gene was performed using iRNA-seq (v 1.1) specifying the "-count gene" option (Madsen et al., 2015)
Non-hepatocyte genes were filtered out (Input vs IP) and differential expression between the conditions (Ctrl vs Mild vs Advanced) was determined using DESeq2 (v 1.24.0) (Love et al., 2014)
Genome_build: mm10
Supplementary_files_format_and_content: Tab-delimited text files containing unnormalized counts (output from iRNA-seq)
Supplementary_files_format_and_content: Tab-delimited text with log2FC and differential gene expression analyses between conditions (Ctrl vs Mild vs Advanced) (output from DESeq2)

source_name: Hepatocyte Nuclei

extract_protocol:
Whole liver nuclei as well as bead-bound and supernatant nuclei prepared from INTACT mice were directly resuspended in Trizol. RNA purification was performed using EconoSpin columns (Epoch) with on-column DNase digestion (Qiagen).
Total RNA (50-100ng) was prepared for sequencing using VAHTS Stranded mRNA-seq Library Kit for Illumina (Vazyme NR602) following manufacturer’s recommendations, except that no selection for poly-adenylated RNA was used.
Prepared PCR products were purified and size-selected on AMPure XP beads (Beckman A63881), and library quality was assessed on the Agilent Bioanalyzer 2100 system. RNA libraries were sequenced as 50 bp paired-end runs on a HiSeq 4000 platform (Illumina, San Diego, USA).

tag: diet

value: liver

tag: Sex

value: male


title: D80WT1


title: D60WT3


title: D80SV3


title: RNA-seq_IP_CDAHFD_Control_10110


title: RNA-seq_IP_CDAHFD_Mild_10102


title: RNA-seq_IP_CDAHFD_Advanced_9845


title: RNA-seq_IP_CDAHFD_Advanced_9896


title: RNA-seq_IP_CDAHFD_Control_9867


title: RNA-seq_IP_CDAHFD_Mild_9853


title: RNA-seq_IP_CDAHFD_Control_9862


title: RNA-seq_IP_CDAHFD_Mild_9894


title: RNA-seq_IP_CDAHFD_Advanced_10104


title: RNA-seq_Input_CDAHFD_Control_10113

description:
Whole liver nuclei from HEP-INTACT mice
Un_norm_Counts_RNA_seq.txt

source_name: Whole Liver Nuclei


title: RNA-seq_Input_CDAHFD_Control_9862


title: RNA-seq_Input_CDAHFD_Control_9867


title: RNA-seq_Input_CDAHFD_Mild_10102


title: RNA-seq_Input_CDAHFD_Advanced_9896


title: RNA-seq_Input_CDAHFD_Mild_9894


title: RNA-seq_Input_CDAHFD_Advanced_10104


title: RNA-seq_Input_CDAHFD_Advanced_9845


title: RNA-seq_Input_CDAHFD_Control_10110


title: RNA-seq_IP_FPC_Control_6953


title: RNA-seq_IP_FPC_Control_6852


title: RNA-seq_IP_FPC_Control_6952


title: RNA-seq_IP_FPC_Advanced_6904


title: RNA-seq_IP_FPC_Control_6816


title: RNA-seq_IP_FPC_Advanced_6880


title: RNA-seq_IP_FPC_Mild_6888


title: RNA-seq_IP_CDAHFD_Mild_9852


title: RNA-seq_IP_FPC_Advanced_6826


title: RNA-seq_Input_CDAHFD_Mild_9852


title: RNA-seq_IP_FPC_Mild_6886


title: RNA-seq_Input_CDAHFD_Mild_9853


title: RNA-seq_Input_FPC_6816


title: RNA-seq_Input_FPC_6953


title: RNA-seq_Input_FPC_6952


title: RNA-seq_IP_FPC_Mild_6887


title: RNA-seq_Input_FPC_Advanced_6826


title: RNA-seq_Input_FPC_Advanced_6904


title: RNA-seq_Input_FPC_Mild_6888


title: RNA-seq_Input_FPC_6852


title: RNA-seq_Input_FPC_Mild_6887


title: RNA-seq_Input_FPC_Mild_6825


title: RNA-seq_Input_FPC_Mild_6886


title: IP_CDAHFD_Control_10113

description:
IP'ed nuclei from HEP-INTACT mice
Ctrl_CDA_TD.ucsc.bedGraph.gz

library_source: genomic

data_processing:
Sequence tags from ATAC-seq libraries were aligned to the mm10 using the BWA aligner (version 0.7.5a-r405) (Li and Durbin, 2009).
Post-alignment processing of reads was performed with Samtools (0.1.19-44428cd) (Li et al., 2009) by removing duplicate reads and filtering for high quality reads using Samtools view using the following settings ”-b -h -f 1 -F 4 -F 8 -F 256 -F 2048 -q 30”. Furthermore, only reads with a fragment length<100bp was used corresponding to the reads located in nucleosome-free regions.
ATAC seq peaks were identified, annotated and tags in peaks were counted using HOMER (Heinz et al., 2010). Tag directories from conditions with technical duplicates were combined into one before further analyses. Peaks were called in each library with HOMER findPeaks using the following settings: ‘peaks’, ‘-fragLength 70’, ‘-style factor’, ‘-minDist 140’, ‘-size 70’.
For all peak files, overlapping peaks were merged and collected in one master peak file. Tags were then counted in a 200bp window around the peak centers for each individual library in the resulting master peak file.
Differential accessible sites were determined using DESeq2 using default parameters.
Bedgraph files for individual libraries were generated using HOMER makeUCSCfile specifying ‘-fragLength 70’ and ‘-fsize 20e’
Bedgraph files for each condition were generated by merging the individual tag directories of one condition into one and using HOMER makeUCSCfile specifying ‘-fragLength 70’ and ‘-fsize 20e’
Genome_build: mm10
Supplementary_files_format_and_content: Tab-delimited text with unnorrmalizaed counts (output from HOMER)
Supplementary_files_format_and_content: Tab-delimited text with normalized counts (output from DESeq2)
Supplementary_files_format_and_content: Bedgraph files for individual libraries
Supplementary_files_format_and_content: Bedgraph files (merged) - one from each condition

molecule: genomic DNA

extract_protocol:
Approximately 25,000 bead-bound nuclei from INTACT reactions were transposed in a 50 μL volume of 1X TTBL buffer and 3.5 μL TTE Mix V50 (from TruePrep™ DNA Library Prep Kit V2 for Illumina, Vazyme TD501) for 30 minutes at 37°C. Fragmented genomic DNA was recovered using Buffer ERC coupled with MinElute spin column purification (Qiagen). Samples originating from MAC INTACT mice were run in technical duplicates.
Transposed genomic DNA was amplified by 12 cycles of quantitative PCR. Amplified DNA was purified and size-selected on AMPure XP beads (Beckman A63881), analyzed on an Agilent Bioanalyzer, and sequenced (paired-end) on an Illumina HiSeq 4000 platform.


title: IP_CDAHFD_Control_10110


title: IP_CDAHFD_Mild_10102

description:
IP'ed nuclei from HEP-INTACT mice
Mild_CDA_TD.ucsc.bedGraph.gz


title: IP_CDAHFD_Advanced_10104

description:
IP'ed nuclei from HEP-INTACT mice
Adv_CDA_TD.ucsc.bedGraph.gz


title: IP_CDAHFD_Control_9862


title: IP_CDAHFD_Mild_9894


title: IP_CDAHFD_Control_9867


title: IP_CDAHFD_Advanced_9845


title: RNA-seq_Input_FPC_Advanced_6880


title: IP_CDAHFD_Mild_9852


title: IP_CDAHFD_Mild_9853


title: IP_FPC_Control_6952

description:
IP'ed nuclei from HEP-INTACT mice
Ctrl_FPC_TD.ucsc.bedGraph.gz


title: IP_FPC_Control_6953


title: IP_FPC_Mild_6888

description:
IP'ed nuclei from HEP-INTACT mice
Mild_FPC_TD.ucsc.bedGraph.gz


title: IP_CDAHFD_Advanced_9896


title: RNA-seq_IP_FPC_Mild_6825


title: IP_FPC_Mild_6887


title: IP_FPC_Advanced_6904

description:
IP'ed nuclei from HEP-INTACT mice
Adv_FPC_TD.ucsc.bedGraph.gz


title: IP_FPC_Control_6816


title: IP_FPC_Control_6852


title: IP_FPC_Advanced_6880


title: IP_FPC_Mild_6886


title: IP_FPC_Advanced_6826


title: IP_FPC_Mild_6825


title: 10wk_STAM_4

data_processing:
The STAR aligner (v 2.4.2a) (Dobin et al., 2013) with modified parameter settings (--twopassMode=Basic) was used for split-read alignment against the mouse genome assembly mm10 and UCSC knownGene annotation.
Quantification of the number of mapped reads of each gene and differential expression analyses was performed using iRNA-seq (v 1.1) in the 'DE mode' specifying the "-count gene" option (Madsen et al., 2015)
Genome_build: mm10
Supplementary_files_format_and_content: Tab-delimited text with log2FC and differential gene expression analyses (output from iRNA-seq)

molecule: polyA RNA

source_name: Liver

extract_protocol:
Liver tissue were homogenized directly in Trizol using a Tissuelyzer II (Qiagen) and RNA purification was performed using EconoSpin columns (Epoch).
A total amount of 800ng of total RNA was used and sequencing libraries were generated using Truseq Stranded mRNA (Illumina 20020595)  following manufacturer’s recommendations.
Prepared PCR products were purified and size-selected on AMPure XP beads (Beckman A63881), and library quality was assessed on the Agilent Bioanalyzer 2100 system. The prepared libraries were sequenced (paired-end) on a Illumina platform.

value: STAM HFD, 10wks

tag: study duration


title: 10wk_STAM_2


title: 10wk_STAM_1


title: 10wk_Ctrl_5

value: Control Diet, 10wks


title: 10wk_Ctrl_4


title: 10wk_Ctrl_3


title: 10wk_Ctrl_2


title: 4wk_STAM_4

value: STAM HFD, 4wks


title: 4wk_STAM_3


title: 10wk_Ctrl_1


title: 4wk_STAM_5


title: 4wk_Ctrl_4

value: Control Diet, 4wks


title: 4wk_Ctrl_5


title: 4wk_STAM_2


title: 4wk_Ctrl_1


title: MCD_4wk_2

value: MCD Diet


title: 4wk_Ctrl_3


title: MCD_4wk_3


title: 10wk_STAM_5


title: 4wk_Ctrl_2


title: 10wk_STAM_3


title: CD_4wk_4

value: Matched Control Diet to MCD-diet


title: CD_4wk_1


title: MCD_4wk_4


title: CD_4wk_2


title: CD_4wk_3


title: EKHT8_ROW40_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 434

first: Julien

last: Prados

address: Rue Michel Servet 1

department: SCMU

data_processing:
bulk RNA-seq reads were parsed to extract: sindbis barcode (nucleotide 1-32), sinbis index (nuceodite 89-94), and umi sequence (nucleotide 95-106).
RNA-seq reads are deduplicated on the base of the UMI sequence
RNA-seq reads are tagged as viral, spike or unknown depending on their barcode sequence
Single-cell gene expression are quantifyied using summarizeOverlaps() method of the R package GenomicsAlignments(). Only exonic reads are considered in the quantification and this includes 5' and 3' UTRs.
Barcodes found in the single cell of the injection site are clustered to correct for sequencing errors
Barcodes from the target regions are mapped to the error-corrected barcodes found in the injection sites
Counts are normalized with the number of spike found in the same target region
Genome_build: Single cell reads are mapped to mm10 genome (no mapping for bulk reads because it is a barcode sequencing protocol)
Supplementary_files_format_and_content: connectID_links.tsv.gz contains the result of the parsing of the sindbis reads. The file report the amount of unique umi sequence of a target that was associated to a barcode of the injection site. It also report include the number of spike in the region and te number of time the barcode was seen in the injection site.
Supplementary_files_format_and_content: connectID_S1_cells_metadata.tsv.gz contains meta-data for each single-cell, together with connection information extracted from the barcodes
Supplementary_files_format_and_content: connectID_S1_cells_count_matrix.tsv.gz contains the gene expression count matrix of every single cell

source_name: cortex S1

extract_protocol:
The primary somatosensory cortex was microdissected as aforementioned. Cells were further dissociated by incubating micro-dissected samples in 0.5 mg/mL pronase (Sigma, #P5147) at 37°C for 10 minutes, followed by incubation in 5% bovine serum albumin for 3 minutes and manual trituration in ACSF using pulled glass pipettes. Cells were then centrifuged for 10 minutes at 600 rpm and resuspended before filtration using a 70 mm cell strainer (ClearLine, # 141379C). Cells were then incubated for 10 minutes at 37°C with Hoechst (0.1 mg/mL) and isolated using a Beckman Coulter Moflo Astrios FAC-sorter. Singlet Hoechst+cells were sorted according to their Forward and Side scattering properties (FSC and SSC), and their negativity for Draq7TM (Viability dye, Far red DNA intercalating agent, Beckman Coulter, #B25595). 5000 to 10 000 cells were FACsorted for each experiment. Three microliters of C1 Suspension Reagent (Fluidigm) was added to 10 ml of FAC-sorted cells GFP+ cells, yielding a 300-500 cells / ml suspension. 12 ml of this suspension mix were loaded on a C1 Single-Cell AutoPrep integrated fluidic circuit (IFC) designed for 10 to 17 mm diameter-cells (Fluidigm, #100-5780). RNA was extracted using an RNeasy kit (Qiagen, #74034), and quality control was done using 2001 Bioanalyzer from Agilent. cDNA libraries were obtained using SMARTseq v4 kit (Clontech, # 634888) and sequenced using HiSeq 2500 sequencer.
SMARTseq v4 kit (Clontech, # 634888)

value: cortex S1

tag: dissection


title: EKHT8_ROW40_7: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 433


title: MCD_4wk_1


title: EKHT8_ROW40_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 432


title: EKHT8_ROW40_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 431


title: EKHT8_ROW40_2: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 429


title: EKHT8_ROW40_20: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 430


title: EKHT8_ROW40_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 428


title: EKHT8_ROW40_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 427


title: EKHT8_ROW40_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 426


title: EKHT8_ROW40_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 425


title: EKHT8_ROW40_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 424


title: 4wk_STAM_1


title: EKHT8_ROW39_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 423


title: EKHT8_ROW39_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 422


title: EKHT8_ROW39_3: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 421


title: EKHT8_ROW39_20: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 420


title: EKHT8_ROW39_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 417


title: EKHT8_ROW39_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 416


title: EKHT8_ROW39_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 418


title: EKHT8_ROW39_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 415


title: EKHT8_ROW39_2: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 419


title: EKHT8_ROW39_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 413


title: EKHT8_ROW39_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 414


title: EKHT8_ROW38_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 409


title: EKHT8_ROW38_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 408


title: EKHT8_ROW39_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 412


title: EKHT8_ROW39_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 410


title: EKHT8_ROW38_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 407


title: EKHT8_ROW39_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 411


title: EKHT8_ROW38_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 406


title: EKHT8_ROW38_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 404


title: EKHT8_ROW38_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 403


title: EKHT8_ROW38_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 400


title: EKHT8_ROW38_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 402


title: EKHT8_ROW37_3: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 397


title: EKHT8_ROW38_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 401


title: EKHT8_ROW37_20: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 396


title: EKHT8_ROW37_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 398


title: EKHT8_ROW37_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 395


title: EKHT8_ROW37_7: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 399


title: EKHT8_ROW38_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 405


title: EKHT8_ROW37_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 394


title: EKHT8_ROW37_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 392


title: EKHT8_ROW37_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 391


title: EKHT8_ROW37_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 393


title: EKHT8_ROW36_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 390


title: EKHT8_ROW36_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 387


title: EKHT8_ROW36_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 389


title: EKHT8_ROW36_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 388


title: EKHT8_ROW36_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 384


title: EKHT8_ROW36_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 383


title: EKHT8_ROW36_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 385


title: EKHT8_ROW36_20: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 386


title: EKHT8_ROW36_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 381


title: EKHT8_ROW36_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 380


title: EKHT8_ROW35_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 378


title: EKHT8_ROW35_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 379


title: EKHT8_ROW35_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 374


title: EKHT8_ROW35_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 372


title: EKHT8_ROW35_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 373


title: EKHT8_ROW34_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 368


title: EKHT8_ROW34_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 369


title: EKHT8_ROW35_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 371


title: EKHT8_ROW35_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 370


title: EKHT8_ROW34_3: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 367


title: EKHT8_ROW34_2: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 366


title: EKHT8_ROW34_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 365


title: EKHT8_ROW34_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 364


title: EKHT8_ROW34_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 362


title: EKHT8_ROW36_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 382


title: EKHT8_ROW33_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 357


title: EKHT8_ROW33_7: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 358


title: EKHT8_ROW34_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 361


title: EKHT8_ROW34_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 360


title: EKHT8_ROW35_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 376


title: EKHT8_ROW33_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 359


title: EKHT8_ROW33_20: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 355


title: EKHT8_ROW35_3: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 377


title: EKHT8_ROW33_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 354


title: EKHT8_ROW35_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 375


title: EKHT8_ROW33_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 351


title: EKHT8_ROW33_3: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 356


title: EKHT8_ROW33_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 350


title: EKHT8_ROW33_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 353


title: EKHT8_ROW33_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 352


title: EKHT8_ROW33_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 349


title: EKHT8_ROW33_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 348


title: EKHT8_ROW34_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 363


title: EKHT8_ROW32_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 344


title: EKHT8_ROW32_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 346


title: EKHT8_ROW32_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 342


title: EKHT8_ROW32_20: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 343


title: EKHT8_ROW32_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 345


title: EKHT8_ROW32_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 341


title: EKHT8_ROW32_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 339


title: EKHT8_ROW32_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 338


title: EKHT8_ROW32_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 334


title: EKHT8_ROW31_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 332


title: EKHT8_ROW31_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 333


title: EKHT8_ROW32_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 335


title: EKHT8_ROW31_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 331


title: EKHT8_ROW32_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 336


title: EKHT8_ROW32_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 337


title: EKHT8_ROW31_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 327


title: EKHT8_ROW30_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 326


title: EKHT8_ROW31_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 328


title: EKHT8_ROW30_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 325


title: EKHT8_ROW31_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 329


title: EKHT8_ROW30_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 322


title: EKHT8_ROW30_7: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 324


title: EKHT8_ROW30_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 323


title: EKHT8_ROW30_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 321


title: EKHT8_ROW30_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 320


title: EKHT8_ROW30_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 319


title: EKHT8_ROW31_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 330


title: EKHT8_ROW32_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 347


title: EKHT8_ROW32_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 340


title: EKHT8_ROW30_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 316


title: EKHT8_ROW30_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 317


title: EKHT8_ROW30_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 318


title: EKHT8_ROW29_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 314


title: EKHT8_ROW29_3: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 311


title: EKHT8_ROW29_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 313


title: EKHT8_ROW29_20: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 310


title: EKHT8_ROW29_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 309


title: EKHT8_ROW29_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 308


title: EKHT8_ROW29_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 304


title: EKHT8_ROW29_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 305


title: EKHT8_ROW29_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 306


title: EKHT8_ROW28_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 303


title: EKHT8_ROW29_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 307


title: EKHT8_ROW28_20: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 301


title: EKHT8_ROW28_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 299


title: EKHT8_ROW28_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 297


title: EKHT8_ROW28_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 295


title: EKHT8_ROW28_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 296


title: EKHT8_ROW28_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 293


title: EKHT8_ROW28_3: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 302


title: EKHT8_ROW28_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 298


title: EKHT8_ROW27_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 291


title: EKHT8_ROW28_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 300


title: EKHT8_ROW28_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 294


title: EKHT8_ROW28_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 292


title: EKHT8_ROW30_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 315


title: EKHT8_ROW27_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 290


title: EKHT8_ROW29_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 312


title: EKHT8_ROW27_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 288


title: EKHT8_ROW27_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 287


title: EKHT8_ROW27_7: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 289


title: EKHT8_ROW27_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 283


title: EKHT8_ROW27_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 284


title: EKHT8_ROW27_20: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 286


title: EKHT8_ROW27_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 285


title: EKHT8_ROW27_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 282


title: EKHT8_ROW27_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 281


title: EKHT8_ROW27_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 279


title: EKHT8_ROW26_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 277


title: EKHT8_ROW26_7: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 278


title: EKHT8_ROW26_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 276


title: EKHT8_ROW26_2: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 275


title: EKHT8_ROW26_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 273


title: EKHT8_ROW26_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 272


title: EKHT8_ROW25_20: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 268


title: EKHT8_ROW25_7: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 269


title: EKHT8_ROW25_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 270


title: EKHT8_ROW26_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 271


title: EKHT8_ROW26_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 274


title: EKHT8_ROW25_2: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 267


title: EKHT8_ROW25_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 259


title: EKHT8_ROW25_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 260


title: EKHT8_ROW25_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 261


title: EKHT8_ROW25_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 262


title: EKHT8_ROW25_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 265


title: EKHT8_ROW25_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 266


title: EKHT8_ROW27_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 280


title: EKHT8_ROW25_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 258


title: EKHT8_ROW25_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 257


title: EKHT8_ROW24_2: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 254


title: EKHT8_ROW24_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 253


title: EKHT8_ROW24_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 252


title: EKHT8_ROW24_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 256


title: EKHT8_ROW24_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 255


title: EKHT8_ROW24_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 248


title: EKHT8_ROW24_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 250


title: EKHT8_ROW24_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 249


title: EKHT8_ROW25_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 264


title: EKHT8_ROW25_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 263


title: EKHT8_ROW23_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 245


title: EKHT8_ROW23_3: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 242


title: EKHT8_ROW23_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 243


title: EKHT8_ROW23_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 239


title: EKHT8_ROW23_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 238


title: EKHT8_ROW23_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 236


title: EKHT8_ROW23_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 233


title: EKHT8_ROW23_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 234


title: EKHT8_ROW23_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 235


title: EKHT8_ROW22_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 232


title: EKHT8_ROW22_7: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 231


title: EKHT8_ROW24_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 251


title: EKHT8_ROW22_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 229


title: EKHT8_ROW24_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 247


title: EKHT8_ROW22_2: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 228


title: EKHT8_ROW24_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 246


title: EKHT8_ROW22_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 226


title: EKHT8_ROW23_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 244


title: EKHT8_ROW22_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 224


title: EKHT8_ROW22_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 223


title: EKHT8_ROW23_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 241


title: EKHT8_ROW22_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 222


title: EKHT8_ROW23_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 240


title: EKHT8_ROW22_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 221


title: EKHT8_ROW21_7: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 219


title: EKHT8_ROW22_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 220


title: EKHT8_ROW21_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 218


title: EKHT8_ROW21_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 215


title: EKHT8_ROW21_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 214


title: EKHT8_ROW23_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 237


title: EKHT8_ROW21_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 213


title: EKHT8_ROW22_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 230


title: EKHT8_ROW21_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 212


title: EKHT8_ROW21_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 211


title: EKHT8_ROW20_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 207


title: EKHT8_ROW22_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 227


title: EKHT8_ROW21_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 210


title: EKHT8_ROW21_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 208


title: EKHT8_ROW20_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 206


title: EKHT8_ROW22_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 225


title: EKHT8_ROW20_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 203


title: EKHT8_ROW20_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 204


title: EKHT8_ROW20_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 201


title: EKHT8_ROW21_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 216


title: EKHT8_ROW21_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 217


title: EKHT8_ROW20_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 200


title: EKHT8_ROW19_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 199


title: EKHT8_ROW19_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 193


title: EKHT8_ROW19_3: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 196


title: EKHT8_ROW19_2: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 194


title: EKHT8_ROW19_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 192


title: EKHT8_ROW20_7: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 205


title: EKHT8_ROW19_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 197


title: EKHT8_ROW19_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 198


title: EKHT8_ROW19_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 191


title: EKHT8_ROW19_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 190


title: EKHT8_ROW19_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 189


title: EKHT8_ROW21_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 209


title: EKHT8_ROW20_3: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 202


title: EKHT8_ROW19_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 188


title: EKHT8_ROW19_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 187


title: EKHT8_ROW18_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 185


title: EKHT8_ROW18_20: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 183


title: EKHT8_ROW18_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 184


title: EKHT8_ROW18_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 182


title: EKHT8_ROW18_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 180


title: EKHT8_ROW18_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 179


title: EKHT8_ROW17_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 177


title: EKHT8_ROW18_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 178


title: EKHT8_ROW19_20: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 195


title: EKHT8_ROW17_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 175


title: EKHT8_ROW17_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 172


title: EKHT8_ROW17_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 174


title: EKHT8_ROW18_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 186


title: EKHT8_ROW18_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 181


title: EKHT8_ROW17_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 173


title: EKHT8_ROW17_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 171


title: EKHT8_ROW17_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 170


title: EKHT8_ROW16_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 168


title: EKHT8_ROW17_2: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 176


title: EKHT8_ROW16_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 165


title: EKHT8_ROW16_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 169


title: EKHT8_ROW16_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 167


title: EKHT8_ROW16_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 164


title: EKHT8_ROW16_2: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 166


title: EKHT8_ROW16_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 163


title: EKHT8_ROW16_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 161


title: EKHT8_ROW16_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 162


title: EKHT8_ROW16_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 159


title: EKHT8_ROW16_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 160


title: EKHT8_ROW15_7: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 157


title: EKHT8_ROW15_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 158


title: EKHT8_ROW15_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 155


title: EKHT8_ROW15_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 156


title: EKHT8_ROW15_2: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 154


title: EKHT8_ROW15_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 152


title: EKHT8_ROW15_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 153


title: EKHT8_ROW14_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 151


title: EKHT8_ROW14_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 150


title: EKHT8_ROW14_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 149


title: EKHT8_ROW14_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 147


title: EKHT8_ROW14_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 146


title: EKHT8_ROW14_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 144


title: EKHT8_ROW14_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 142


title: EKHT8_ROW13_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 138


title: EKHT8_ROW13_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 139


title: EKHT8_ROW14_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 141


title: EKHT8_ROW13_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 137


title: EKHT8_ROW14_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 145


title: EKHT8_ROW13_3: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 136


title: EKHT8_ROW14_3: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 148


title: EKHT8_ROW14_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 143


title: EKHT8_ROW13_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 132


title: EKHT8_ROW13_2: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 134


title: EKHT8_ROW13_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 131


title: EKHT8_ROW13_20: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 135


title: EKHT8_ROW13_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 128


title: EKHT8_ROW13_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 127


title: EKHT8_ROW13_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 130


title: EKHT8_ROW12_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 124


title: EKHT8_ROW12_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 125


title: EKHT8_ROW13_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 126


title: EKHT8_ROW12_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 123


title: EKHT8_ROW12_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 122


title: EKHT8_ROW12_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 121


title: EKHT8_ROW12_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 120


title: EKHT8_ROW14_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 140


title: EKHT8_ROW12_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 119


title: EKHT8_ROW13_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 133


title: EKHT8_ROW11_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 113


title: EKHT8_ROW12_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 118


title: EKHT8_ROW11_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 117


title: EKHT8_ROW11_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 114


title: EKHT8_ROW11_3: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 112


title: EKHT8_ROW11_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 109


title: EKHT8_ROW11_2: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 111


title: EKHT8_ROW11_7: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 115


title: EKHT8_ROW11_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 116


title: EKHT8_ROW11_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 108


title: EKHT8_ROW13_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 129


title: EKHT8_ROW11_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 110


title: EKHT8_ROW11_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 106


title: EKHT8_ROW11_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 105


title: EKHT8_ROW11_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 107


title: EKHT8_ROW10_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 104


title: EKHT8_ROW10_20: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 102


title: EKHT8_ROW10_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 103


title: EKHT8_ROW10_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 101


title: EKHT8_ROW10_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 99


title: EKHT8_ROW10_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 100


title: EKHT8_ROW10_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 97


title: EKHT8_ROW10_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 98


title: EKHT8_ROW10_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 96


title: EKHT8_ROW09_7: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 95


title: EKHT8_ROW09_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 94


title: EKHT8_ROW09_20: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 92


title: EKHT8_ROW09_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 93


title: EKHT8_ROW09_2: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 91


title: EKHT8_ROW09_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 89


title: EKHT8_ROW09_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 88


title: EKHT8_ROW09_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 90


title: EKHT8_ROW09_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 85


title: EKHT8_ROW09_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 84


title: EKHT8_ROW09_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 86


title: EKHT8_ROW09_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 83


title: EKHT8_ROW09_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 87


title: EKHT8_ROW09_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 82


title: EKHT8_ROW08_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 79


title: EKHT8_ROW08_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 76


title: EKHT8_ROW08_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 77


title: EKHT8_ROW08_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 78


title: EKHT8_ROW08_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 73


title: EKHT8_ROW08_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 80


title: EKHT8_ROW08_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 72


title: EKHT8_ROW08_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 74


title: EKHT8_ROW08_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 81


title: EKHT8_ROW07_7: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 70


title: EKHT8_ROW07_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 69


title: EKHT8_ROW07_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 68


title: EKHT8_ROW07_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 71


title: EKHT8_ROW07_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 62


title: EKHT8_ROW07_2: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 65


title: EKHT8_ROW07_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 63


title: EKHT8_ROW07_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 64


title: EKHT8_ROW07_20: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 66


title: EKHT8_ROW07_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 61


title: EKHT8_ROW07_3: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 67


title: EKHT8_ROW07_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 60


title: EKHT8_ROW08_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 75


title: EKHT8_ROW07_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 58


title: EKHT8_ROW07_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 57


title: EKHT8_ROW06_2: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 53


title: EKHT8_ROW06_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 55


title: EKHT8_ROW07_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 56


title: EKHT8_ROW06_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 52


title: EKHT8_ROW06_7: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 54


title: EKHT8_ROW06_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 49


title: EKHT8_ROW06_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 51


title: EKHT8_ROW05_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 46


title: EKHT8_ROW05_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 43


title: EKHT8_ROW05_9: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 48


title: EKHT8_ROW05_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 47


title: EKHT8_ROW05_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 44


title: EKHT8_ROW04_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 41


title: EKHT8_ROW05_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 42


title: EKHT8_ROW04_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 40


title: EKHT8_ROW04_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 39


title: EKHT8_ROW04_3: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 38


title: EKHT8_ROW07_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 59


title: EKHT8_ROW04_20: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 37


title: EKHT8_ROW04_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 33


title: EKHT8_ROW04_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 34


title: EKHT8_ROW04_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 32


title: EKHT8_ROW03_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 31


title: EKHT8_ROW04_2: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 36


title: EKHT8_ROW05_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 45


title: EKHT8_ROW03_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 28


title: EKHT8_ROW06_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 50


title: EKHT8_ROW03_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 27


title: EKHT8_ROW03_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 26


title: EKHT8_ROW03_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 25


title: EKHT8_ROW03_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 23


title: EKHT8_ROW03_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 22


title: EKHT8_ROW03_5: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 29


title: EKHT8_ROW03_7: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 30


title: EKHT8_ROW03_1: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 21


title: EKHT8_ROW02_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 20


title: EKHT8_ROW03_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 24


title: EKHT8_ROW02_3: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 17


title: EKHT8_ROW02_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 19


title: EKHT8_ROW02_19: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 16


title: EKHT8_ROW02_18: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 15


title: EKHT8_ROW02_15: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 13


title: EKHT8_ROW04_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 35


title: EKHT8_ROW02_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 12


title: EKHT8_ROW02_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 10


title: EKHT8_ROW01_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 4


title: EKHT8_ROW01_14: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 5


title: EKHT8_ROW01_6: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 7


title: EKHT8_ROW01_17: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 6


title: EKHT8_ROW02_13: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 11


title: EKHT8_ROW01_8: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 8


title: EKHT8_ROW01_11: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 2


title: EKHT7_ROW40_4: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 322


title: EKHT8_ROW01_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 1


title: EKHT7_ROW40_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 319


title: EKHT7_ROW40_20: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 321


title: EKHT7_ROW40_10: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 314


title: EKHT7_ROW40_17: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 318


title: EKHT7_ROW40_1: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 313


title: EKHT7_ROW40_15: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 317


title: EKHT7_ROW39_5: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 310


title: EKHT7_ROW40_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 320


title: EKHT7_ROW39_6: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 311


title: EKHT8_ROW01_12: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 3


title: EKHT7_ROW40_14: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 316


title: EKHT7_ROW40_11: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 315


title: EKHT7_ROW39_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 308


title: EKHT8_ROW02_10: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 9


title: EKHT7_ROW39_17: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 306


title: EKHT7_ROW39_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 307


title: EKHT8_ROW02_16: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 14


title: EKHT8_ROW02_4: Reads from single cell RNA-seq of the S1 injection site of either pup 5, cell 18


title: EKHT7_ROW39_13: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 304


title: EKHT7_ROW39_2: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 309


title: EKHT7_ROW39_9: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 312


title: EKHT7_ROW38_7: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 300


title: EKHT7_ROW39_10: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 302


title: EKHT7_ROW38_9: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 301


title: EKHT7_ROW39_12: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 303


title: EKHT7_ROW38_4: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 299


title: EKHT7_ROW38_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 297


title: EKHT7_ROW38_17: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 296


title: EKHT7_ROW38_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 298


title: EKHT7_ROW38_16: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 295


title: EKHT7_ROW38_15: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 294


title: EKHT7_ROW39_14: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 305


title: EKHT7_ROW38_14: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 293


title: EKHT7_ROW38_11: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 291


title: EKHT7_ROW37_6: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 289


title: EKHT7_ROW37_9: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 290


title: EKHT7_ROW38_12: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 292


title: EKHT7_ROW37_2: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 287


title: EKHT7_ROW37_15: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 282


title: EKHT7_ROW37_17: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 284


title: EKHT7_ROW37_16: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 283


title: EKHT7_ROW37_5: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 288


title: EKHT7_ROW36_9: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 280


title: EKHT7_ROW37_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 286


title: EKHT7_ROW37_13: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 281


title: EKHT7_ROW37_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 285


title: EKHT7_ROW36_7: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 279


title: EKHT7_ROW36_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 276


title: EKHT7_ROW36_2: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 277


title: EKHT7_ROW36_4: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 278


title: EKHT7_ROW36_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 275


title: EKHT7_ROW36_15: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 273


title: EKHT7_ROW36_16: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 274


title: EKHT7_ROW36_12: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 270


title: EKHT7_ROW35_6: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 269


title: EKHT7_ROW36_13: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 271


title: EKHT7_ROW35_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 267


title: EKHT7_ROW35_20: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 268


title: EKHT7_ROW35_17: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 265


title: EKHT7_ROW34_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 260


title: EKHT7_ROW34_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 259


title: EKHT7_ROW35_12: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 263


title: EKHT7_ROW36_14: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 272


title: EKHT7_ROW35_15: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 264


title: EKHT7_ROW34_16: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 257


title: EKHT7_ROW34_15: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 256


title: EKHT7_ROW34_11: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 254


title: EKHT7_ROW33_4: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 251


title: EKHT7_ROW33_3: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 250


title: EKHT7_ROW33_5: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 252


title: EKHT7_ROW34_10: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 253


title: EKHT7_ROW33_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 249


title: EKHT7_ROW35_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 266


title: EKHT7_ROW33_16: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 247


title: EKHT7_ROW33_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 248


title: EKHT7_ROW33_14: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 245


title: EKHT7_ROW33_11: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 244


title: EKHT7_ROW33_15: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 246


title: EKHT7_ROW32_6: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 242


title: EKHT7_ROW32_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 238


title: EKHT7_ROW34_13: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 255


title: EKHT7_ROW32_5: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 241


title: EKHT7_ROW35_11: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 262


title: EKHT7_ROW32_14: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 236


title: EKHT7_ROW31_20: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 232


title: EKHT7_ROW32_12: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 235


title: EKHT7_ROW31_6: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 234


title: EKHT7_ROW31_3: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 233


title: EKHT7_ROW31_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 231


title: EKHT7_ROW31_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 230


title: EKHT7_ROW33_10: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 243


title: EKHT7_ROW31_15: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 227


title: EKHT7_ROW31_12: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 225


title: EKHT7_ROW31_13: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 226


title: EKHT7_ROW30_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 222


title: EKHT7_ROW30_20: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 223


title: EKHT7_ROW30_14: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 220


title: EKHT7_ROW30_6: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 224


title: EKHT7_ROW30_10: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 218


title: EKHT7_ROW30_15: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 221


title: EKHT7_ROW32_2: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 239


title: EKHT7_ROW32_16: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 237


title: EKHT7_ROW29_8: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 217


title: EKHT7_ROW29_20: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 215


title: EKHT7_ROW29_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 213


title: EKHT7_ROW29_7: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 216


title: EKHT7_ROW29_11: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 211


title: EKHT7_ROW29_17: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 212


title: EKHT7_ROW32_20: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 240


title: EKHT7_ROW31_17: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 229


title: EKHT7_ROW31_16: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 228


title: EKHT7_ROW28_20: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 206


title: EKHT7_ROW28_3: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 207


title: EKHT7_ROW28_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 205


title: EKHT7_ROW30_12: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 219


title: EKHT7_ROW28_12: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 201


title: EKHT7_ROW28_14: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 202


title: EKHT7_ROW27_9: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 198


title: EKHT7_ROW28_11: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 200


title: EKHT7_ROW27_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 196


title: EKHT7_ROW28_16: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 204


title: EKHT7_ROW28_15: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 203


title: EKHT7_ROW28_10: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 199


title: EKHT7_ROW27_15: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 194


title: EKHT7_ROW28_9: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 210


title: EKHT7_ROW27_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 195


title: EKHT7_ROW28_6: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 209


title: EKHT7_ROW27_11: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 192


title: EKHT7_ROW28_5: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 208


title: EKHT7_ROW26_2: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 189


title: EKHT7_ROW26_3: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 190


title: EKHT7_ROW27_2: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 197


title: EKHT7_ROW29_2: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 214


title: EKHT7_ROW26_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 188


title: EKHT7_ROW26_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 187


title: EKHT7_ROW26_16: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 186


title: EKHT7_ROW26_15: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 185


title: EKHT7_ROW26_9: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 191


title: EKHT7_ROW26_13: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 183


title: EKHT7_ROW26_14: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 184


title: EKHT7_ROW26_12: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 182


title: EKHT7_ROW26_10: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 181


title: EKHT7_ROW27_12: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 193


title: EKHT7_ROW25_3: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 179


title: EKHT7_ROW25_16: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 176


title: EKHT7_ROW25_20: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 178


title: EKHT7_ROW25_14: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 175


title: EKHT7_ROW25_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 177


title: EKHT7_ROW25_12: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 174


title: EKHT7_ROW25_6: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 180


title: EKHT7_ROW24_9: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 172


title: EKHT7_ROW24_2: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 170


title: EKHT7_ROW25_10: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 173


title: EKHT7_ROW23_7: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 167


title: EKHT7_ROW24_5: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 171


title: EKHT7_ROW23_20: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 165


title: EKHT7_ROW23_2: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 164


title: EKHT7_ROW23_3: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 166


title: EKHT7_ROW24_13: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 169


title: EKHT7_ROW24_12: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 168


title: EKHT7_ROW23_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 163


title: EKHT7_ROW23_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 162


title: EKHT7_ROW23_17: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 161


title: EKHT7_ROW23_15: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 160


title: EKHT7_ROW23_14: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 159


title: EKHT7_ROW23_12: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 158


title: EKHT7_ROW23_11: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 157


title: EKHT7_ROW22_2: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 154


title: EKHT7_ROW22_7: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 156


title: EKHT7_ROW22_6: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 155


title: EKHT7_ROW22_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 153


title: EKHT7_ROW22_15: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 149


title: EKHT7_ROW22_16: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 150


title: EKHT7_ROW22_13: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 147


title: EKHT7_ROW22_17: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 151


title: EKHT7_ROW21_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 145


title: EKHT7_ROW20_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 143


title: EKHT7_ROW22_14: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 148


title: EKHT7_ROW22_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 152


title: EKHT7_ROW20_15: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 141


title: EKHT7_ROW20_11: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 138


title: EKHT7_ROW20_12: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 139


title: EKHT7_ROW19_9: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 137


title: EKHT7_ROW21_13: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 144


title: EKHT7_ROW19_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 135


title: EKHT7_ROW19_17: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 133


title: EKHT7_ROW19_20: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 136


title: EKHT7_ROW20_13: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 140


title: EKHT7_ROW20_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 142


title: EKHT7_ROW19_15: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 132


title: EKHT7_ROW19_14: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 131


title: EKHT7_ROW19_10: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 130


title: EKHT7_ROW18_16: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 126


title: EKHT7_ROW18_3: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 129


title: EKHT7_ROW18_20: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 128


title: EKHT7_ROW21_9: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 146


title: EKHT7_ROW18_10: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 125


title: EKHT7_ROW17_17: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 121


title: EKHT7_ROW17_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 122


title: EKHT7_ROW17_6: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 124


title: EKHT7_ROW17_5: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 123


title: EKHT7_ROW17_13: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 118


title: EKHT7_ROW17_14: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 119


title: EKHT7_ROW17_15: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 120


title: EKHT7_ROW17_12: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 117


title: EKHT7_ROW17_11: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 116


title: EKHT7_ROW17_10: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 115


title: EKHT7_ROW17_1: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 114


title: EKHT7_ROW19_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 134


title: EKHT7_ROW16_16: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 111


title: EKHT7_ROW16_17: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 112


title: EKHT7_ROW16_12: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 109


title: EKHT7_ROW16_3: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 113


title: EKHT7_ROW16_14: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 110


title: EKHT7_ROW15_7: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 107


title: EKHT7_ROW15_9: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 108


title: EKHT7_ROW15_6: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 106


title: EKHT7_ROW18_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 127


title: EKHT7_ROW15_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 104


title: EKHT7_ROW15_20: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 105


title: EKHT7_ROW15_12: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 101


title: EKHT7_ROW15_16: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 103


title: EKHT7_ROW15_14: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 102


title: EKHT7_ROW14_5: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 99


title: EKHT7_ROW14_7: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 100


title: EKHT7_ROW14_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 97


title: EKHT7_ROW14_11: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 93


title: EKHT7_ROW13_6: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 91


title: EKHT7_ROW14_10: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 92


title: EKHT7_ROW13_4: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 90


title: EKHT7_ROW14_16: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 95


title: EKHT7_ROW13_2: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 87


title: EKHT7_ROW13_18: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 86


title: EKHT7_ROW14_17: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 96


title: EKHT7_ROW13_20: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 88


title: EKHT7_ROW14_14: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 94


title: EKHT7_ROW12_19: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 82


title: EKHT7_ROW12_16: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 81


title: EKHT7_ROW13_3: Reads from single cell RNA-seq of the S1 injection site of either pup 3, cell 89