title: ATACseq_VTA1_DN

source_name: dopaminergic neurons

extract_protocol: For collection of single-nucleus ATAC-seq (snATAC-seq), male C57Bl/6Nl (RRID: IMSR_CR:027; WT) mice, ages 7 weeks, was sacrificed by cervical disolation. Brain was removed and the tissue containing the midbrain VTA was dissected from each hemisphere at room temperature and rapidly frozen on dry ice. Frozen midbrain was kept at -80C until further processing. 10x Genomics scATAC-seq library was generated from midbrain VTA according to the 10X Genomics manual “Nuclei Isolation from Mouse Brain Tissue for Single Cell ATAC Sequencing Rev B” for flash frozen tissue with minor adjustments. Briefly, 500 uL 0.1X lysis buffer (10 mM Tris-HCl, pH 7.4, 10 mM NaCl, 3 mM MgCl2, 1% BSA, 0.01% Tween-20, 0.01% Nonidet P40 Substitute 0.001% Digitonin) was added to the frozen samples and immediately homogenized using a pellet pestle (15x), followed by 5 min incubation on ice. The lysate was pipette mixed 10x, then incubated 10 min on ice. Finally, 500 uL of chilled wash buffer (10 mM Tris-HCl, pH 7.4, 10 mM NaCl, 2 mM MgCl2, 1% BSA, 0.1% Tween-20) was added to the lysed cells, and the suspension was passed through 30 uM CellTrics strainers (Th Geyer, cat# 7648779) The final ~500 l nuclei suspension was stained with DAPI (final concentration 0.03 ug/mL) for ~5 min.   Around 200,000 DAPI positive events were sorted using a BD FACSAria III Flow Cytometer with 70µm nozzle configuration with sample and sort collection device cooling set to 4°C into 300 l Diluted Nuclei buffer (commercial buffer from 10X Genomics) in a 1,5mL Eppendorf tube. A first gate excluded debris in a FSC/SSC-plot and a consecutive, second gate in a DAPI-A/DAPI-H-plot was used to exclude doublets and nuclei with incomplete DNA content. The collected nuclei were centrifuged at 500g for 5 min at 4°C and resuspended in 20µl Diluted Nuclei Buffer. The nuclei concentration was determined using a Countess II FL Automated Cell Counter in DAPI fluorescence mode. snATACseq libraries were prepared following the Chromium Next GEM Single Cell ATAC Reagent Kits v1.1 User Guide. Briefly, nuclei were loaded on a microfluidics chip together with RT reagents, beads with oligo-dT tags and oil to create an emulsion. Afterwards the reverse transcription reaction takes place inside the droplets. The barcoded cDNA is recovered from the emulsion, amplified and cleaned using a bead purification process. The cDNA is then using for library construction including enzymatic fragmentation, adapter ligation and sample index PCR. Libraries were sequenced with either an Illumina NextSeq 500 machine using paired-end 75 bp reads (for VTA-1, 150 cycles), or by NovaSeq 6000 using paired-end 75 bp reads (for VTA-2, 100 cycles).

value: 7 w

value: midbrain ventral tegmental area

value: dopaminergic neurons


title: Peripheral blood_GDM_rep1

status: Public on Aug 27 2021

type: RNA

city: Ningbo

first: Jin

last: Xu

address: 818 Fenghua Road

country: China

institute: Ningbo University

description: circRNA expression in GDM woman

hyb_protocol: Arrays were hybridized was preformed in a Agilent Hybridization Oven overnight at a rotation speed of 20 rpm and a temperature of 42℃ and washed with two consecutive solutions (0.2% SDS, 2× SSC at 42℃ for 5 min, and 0.2× SSC for 5 min at room temperature).

scan_protocol: The microarrays were scanned using the Agilent chip scanner (G2565CA).

data_processing: The circRNA array data were analyzed using the GeneSpring software V13.0 (Agilent). The Significance Analysis of Microarrays (SAM)  method was used to correct, normalize and summarize the probe level information.

molecule: total RNA

organism: Homo sapiens

source_name: Gestational diabetes mellitus peripheral blood,replicate 1

label_protocol: cDNA labeled with a fluorescent dye (Cy3-dCTP) was produced by Eberwine’s linear RNA amplification method and subsequent enzymatic reaction. This procedure has been improved by using CapitalBio cRNA Amplification and Labeling Kit (CapitalBio) for producing higher yields of labeled cDNA.

extract_protocol: HP total RNA extraction kit was used to extract total RNA from 1mL PBMCs according to the manufacturer's instructions.

treatment_protocol: Peripheral blood was delaminated with Ficoll separation solution and centrifuged at 1500rpm for 40 minutes. The second layer of white flocs was absorbed in the obtained separation solution, and PBS buffer was added to 6ml. After centrifuging at 1700rpm for 10 minutes, the lowest white precipitate was collected, 1mL TRIzol pyrolysis solution was added to make it completely dissolve.

tag: disease state

value: Gestational diabetes mellitus

tag: gender

value: female

tag: tissue

value: Peripheral blood mononuclear cells

tag: age


title: Tml>Arm

type: SRA

city: Lausanne

first: Tania

last: Wyss

address: Rue du Bugnon 25A

country: Switzerland

institute: SIB Swiss Institute of Bioinformatics

library_source: transcriptomic

data_processing:
Single cells were processed using 10x Genomics Single Cell 3' v3 chemistry. Sequencing performed at the Gene Expression Core Facility (EPFL, Lausanne, Switzerland). Conventional Sanger / Illumina 1.9 score encoding. Fastq files were processed with Cell Ranger v.3.0.1, with cell detection setting expect=5000
Alignment and counts per genes were processed using the Cell Ranger v.3.0.1 pipeline
The Cell Ranger output matrix containing filtered features and barcodes was imported into R v.3.5.1. and normalized using the Seurat package v.3.1.5
Genome_build: Mus musculus mm10
Supplementary_files_format_and_content: tab-separated text file of raw counts, gene x cell matrix. The first column contains gene symbols. The sample origin of each cell is contained within each cell's name (column names)

organism: Mus musculus

source_name: Total  P14 cells at day 42 of secondary LCMV Arm infection, derived from Tcf7GFP+ P14 cells at day 45 of LCMV cl13 infection

extract_protocol:
Cell lysis and RNA capture was performed according to the 10x Genomics protocol (Single Cell 3' v3 chemistry)
The cDNA libraries were generated according to the manufacturer’s protocol (Illumina) and further sequenced (paired-end) with HiSeq2500 technology (Illumina) at the Gene Expression Core Facility (GECF) of the School of Life Sciences EPFL.
10x Genomics single-cell RNA sequencing

treatment_protocol: Total P14 cells were flow sorted from the spleen of naive mice based as CD62L+ CD8+ cells  (Naive) or from the spleens of LCMV infected mice based on CD8+ CD45.2+ CD45.1-.

tag: strain

tag: cell type

value: CD8 T cells expressing a P14 TCR and a Tcf7GFP reporter

tag: genotype

value: B6;D2-Tg(TcrLCMV)327Sdz/JDvsJ   B6-Tg(Tcf7GFP)WHe


title: Tcm>Arm

source_name: Total P14 cells at day 42 of secondary LCMV Arm infection, derived from Tcf7GFP+ P14 cells at day 45 of primary LCMV Arm infection


title: HTO_L004

city: New York

first: Samir

last: Parekh

state: NY

address: 1470 Madison Avenue, 5-114, Box 1079

department: Tisch Cancer Institute

country: USA

institute: Icahn School of Medicine at Mount Sinai

description: hashtag-oligos replicate 4

data_processing:
Data were analyzed using Cell Ranger v3.1 pipeline, available via the 10X Genomics website.
Genome_build: hg38
Supplementary_files_format_and_content: filtered_feature_bc_matrix.tar.gz: gene barcode matrices and feature barcode matrix; metadata.tar.gz: contains data corresponding to the HTOs and ADTs used, as well as the sample metadata

source_name: peripheral blood mononuclear cells

growth_protocol: Peripheral blood mononuclear cells (PBMC) were Ficoll density separated and cryopreserved.

extract_protocol:
Stained cells were then encapsulated for single-cell reverse transcription using the 10X Chromium platform (5’ v1.0)
cDNA amplification was performed in the presence of 2pM of an antibody oligo specific primer to increase yield of antibody derived tags (ADTs) and 3pM of specific primer to increase yield of HTOs. The amplified cDNA was then separated by SPRI size selection into cDNA fractions containing mRNA derived cDNA (>300bp) and ADT-derived cDNAs (<180bp), which were further purified by additional rounds of SPRI selection. Independent sequencing libraries were generated from the mRNA and ADT cDNA fractions, which were quantified, pooled and sequenced together
OTHER: CITE-seq

treatment_protocol: 5 samples (1 healthy donor, 4 patients) were split into two aliquots and were either "stimulated" or "unstimulated". Stimulated aliquots were incubated for 3hrs at 37ºC with PMA/Ionomycin. Unstimulated aliquots were incubated for 3hrs at 37C with cRPMI.

tag: tag

value: hashtag-oligos


title: HTO_L002

description: hashtag-oligos replicate 2


title: ADT_L002

description: antibody-derived tags replicate 2

value: antibody-derived tags


title: ADT_L001

description: antibody-derived tags replicate 1


title: HTO_L003

description: hashtag-oligos replicate 3


title: ADT_L004

description: antibody-derived tags replicate 4


title: C5024T(Ala) CD8 T cell_post act 96h_Biological repeats_ A2

city: Stockholm

first: Joanna

last: Rorbach

state: Not Applicable (Outside of US and Canada)

address: Solnavägen 9, 9d 171 77 Stockholm, Sweden

department: Department of Medical Biochemistry and Biophysics

country: Sweden

institute: karolinska institute

hyb_protocol: Hybridisation processed under 'High Sensitivity' settings.

scan_protocol: High Sensitivity'  FOV 555 in nCounter Digital Analyzer

data_processing: Data normalization was performed in nSolver 4.0 (NanoString)

source_name: C5024T(Ala) CD8 T cell_post act 96h

label_protocol: nCounter® mice Metabolic Pathways Panel, see manufacturer's website http://www.nanostring.com

growth_protocol: Negative selected splenic naive CD8 T cell from 4 WT and 4 C5024T mice. Mice were age (2-month-old) and sex matched. Been cultured and activated in RPMI1640 with 10% FBS, 2.05 mM L-glutamine, 1% penicillin/streptomycin and 55 μM 2-ME.

extract_protocol: Total RNA was extracted using Trizol LS reagent (Invitrogen) and RNA concentrations determined using a NanoDrop ND-1000 UV-Vis Spectrophotometer (ThermoFisher Scientific)

treatment_protocol: for each mouse, freshly purified (negative selection) splenic naïve CD8+ T cells were seeded at a density of 200,000 cells/well and activated using a 1:1 ratio(beads to cell) with Dynabeads Mouse T-Activator CD3/CD28 for 6 and 96 hr at 37oC (5% CO2). 200,000 ex vivo purifyed naïve CD8+ T cells were collected for baseline (0 hr) measurement.

value: 8 weeks

tag: Sex

value: male

value: splenic CD8 T cell

tag: group

value: CD8 T cell_post act 96h


title: ADT_L003

description: antibody-derived tags replicate 3


title: HTO_L001

description: hashtag-oligos replicate 1


title: DNs_R2_GAM180917_3NP_H11_1_S88

city: Berlin

first: Alexander

last: Kukalev

address: Hannoversche Str., 28

department: Berlin Institute for Medical Systems Biology

country: Germany

institute: Max-Delbrueck Center for Molecular Medicine

description:
processed data: DNs.R2.mm10.segregation_at50000.2019-12-05.passed_qc.table
processed data: DNs.R2.mm10.NPMI.at50Kb.all_chromosomes.gz
processed data: DNs.R2.mm10.coseg.at250Kb.all_chromosomes.gz

library_source: genomic

data_processing:
Sequenced reads from each GAM library were mapped to the mouse genome assembly GRCm38 (Dec. 2011, mm10) using bowtie2 with all default settings. All non-uniquely mapped reads, reads with mapping quality < 20 were filtered using the command “sed '/XS:/d' | samtools view -q 20 -F 4 -bS -”. PCR duplicates were removed with the “samtools rmdup” command. Samples were checked for contamination using fastq_screen. Number of nucleotides sequenced in each genomic bin was calculated using bedtools coverage command. Genomic windows that were present within ultrathin nuclear slices for each GAM library were identified using gamtools v2. Each dataset was assessed for quality control by determining the percentage of orphan windows, number of uniquely mapped reads to the mouse genome, and cross-well contamination for every sample. For good quality samples we produced raw co-segregation, as well as normalized (NPMI) pair-wise chromatin contact matrices for each cell-type and replicate.
Genome_build: mm10

molecule: genomic DNA

extract_protocol: Briefly, we isolated single thin tissue sections by ultrathin cryosectioning (approx. 220 nm) of the mouse brain region of interest, and selected specific cell-types using immunofluorescence with specific AB markers. Following cell identification, 3 nuclear sections (nuclear profiles; NPs) were captured by laser microdissection in individual PCR caps. We then extracted, amplified and sequenced the DNA from each PCR cap.

value: M

value: TH-GFP

tag: treatment

value: passed

tag: cross contamination

value: No

tag: if staining

value: TH/Pan-histo


title: DNs_R2_GAM180917_3NP_H08_1_S64

value: midbrain ventral tegmental area

value: dopaminergic neurons


title: DNs_R2_GAM180917_3NP_H09_1_S72


title: DNs_R2_GAM180917_3NP_H07_1_S56


title: DNs_R2_GAM180917_3NP_H04_1_S32


title: DNs_R2_GAM180917_3NP_G09_1_S71


title: DNs_R2_GAM180917_3NP_G10_1_S79


title: DNs_R2_GAM180917_3NP_G05_1_S39


title: DNs_R2_GAM180917_3NP_G06_1_S47


title: DNs_R2_GAM180917_3NP_H02_1_S16


title: DNs_R2_GAM180917_3NP_H05_1_S40


title: DNs_R2_GAM180917_3NP_H01_1_S8


title: DNs_R2_GAM180917_3NP_G04_1_S31


title: DNs_R2_GAM180917_3NP_G03_1_S23


title: DNs_R2_GAM180917_3NP_G12_1_S95


title: DNs_R2_GAM180917_3NP_H10_1_S80


title: Peripheral blood_GDM_rep3

description: circRNA expression in GDM woman

source_name: Gestational diabetes mellitus peripheral blood,replicate 3

value: Gestational diabetes mellitus

value: female


title: DNs_R2_GAM180917_3NP_F09_1_S70


title: DNs_R2_GAM180917_3NP_G01_1_S7

value: failed

value: Yes


title: DNs_R2_GAM180917_3NP_F07_1_S54


title: DNs_R2_GAM180917_3NP_F12_1_S94


title: DNs_R2_GAM180917_3NP_F10_1_S78


title: DNs_R2_GAM180917_3NP_F08_1_S62


title: DNs_R2_GAM180917_3NP_G08_1_S63


title: DNs_R2_GAM180917_3NP_F03_1_S22


title: DNs_R2_GAM180917_3NP_G11_1_S87


title: DNs_R2_GAM180917_3NP_G07_1_S55


title: DNs_R2_GAM180917_3NP_G02_1_S15


title: DNs_R2_GAM180917_3NP_H03_1_S24


title: DNs_R2_GAM180917_3NP_E08_1_S61


title: DNs_R2_GAM180917_3NP_F02_1_S14


title: DNs_R2_GAM180917_3NP_F11_1_S86


title: DNs_R2_GAM180917_3NP_E09_1_S69


title: DNs_R2_GAM180917_3NP_E05_1_S37


title: DNs_R2_GAM180917_3NP_E06_1_S45


title: DNs_R2_GAM180917_3NP_F06_1_S46


title: DNs_R2_GAM180917_3NP_E02_1_S13


title: DNs_R2_GAM180917_3NP_E01_1_S5


title: DNs_R2_GAM180917_3NP_F01_1_S6


title: DNs_R2_GAM180917_3NP_F04_1_S30


title: DNs_R2_GAM180917_3NP_D12_1_S92


title: DNs_R2_GAM180917_3NP_F05_1_S38


title: DNs_R2_GAM180917_3NP_D06_1_S44


title: DNs_R2_GAM180917_3NP_D11_1_S84


title: DNs_R2_GAM180917_3NP_E10_1_S77


title: DNs_R2_GAM180917_3NP_D03_1_S20


title: DNs_R2_GAM180917_3NP_C12_1_S91


title: DNs_R2_GAM180917_3NP_C11_1_S83


title: DNs_R2_GAM180917_3NP_C08_1_S59


title: DNs_R2_GAM180917_3NP_E07_1_S53


title: DNs_R2_GAM180917_3NP_C07_1_S51


title: DNs_R2_GAM180917_3NP_C05_1_S35


title: DNs_R2_GAM180917_3NP_D04_1_S28


title: DNs_R2_GAM180917_3NP_D08_1_S60


title: DNs_R2_GAM180917_3NP_D02_1_S12


title: DNs_R2_GAM180917_3NP_E04_1_S29


title: DNs_R2_GAM180917_3NP_E03_1_S21


title: DNs_R2_GAM180917_3NP_E11_1_S85


title: DNs_R2_GAM180917_3NP_D05_1_S36


title: DNs_R2_GAM180917_3NP_D07_1_S52


title: DNs_R2_GAM180917_3NP_C10_1_S75


title: DNs_R2_GAM180917_3NP_C01_1_S3


title: DNs_R2_GAM180917_3NP_D10_1_S76


title: DNs_R2_GAM180917_3NP_B10_1_S74


title: DNs_R2_GAM180917_3NP_D01_1_S4


title: DNs_R2_GAM180917_3NP_B07_1_S50


title: DNs_R2_GAM180917_3NP_C04_1_S27


title: DNs_R2_GAM180917_3NP_D09_1_S68


title: DNs_R2_GAM180917_3NP_B05_1_S34


title: DNs_R2_GAM180917_3NP_C02_1_S11


title: DNs_R2_GAM180917_3NP_B11_1_S82


title: DNs_R2_GAM180917_3NP_B06_1_S42


title: DNs_R2_GAM180917_3NP_B09_1_S66


title: DNs_R2_GAM180917_3NP_B08_1_S58


title: DNs_R2_GAM180917_3NP_B04_1_S26


title: DNs_R2_GAM180917_3NP_C06_1_S43


title: DNs_R2_GAM180917_3NP_C03_1_S19


title: DNs_R2_GAM180917_3NP_A12_1_S89


title: DNs_R2_GAM180917_3NP_B03_1_S18


title: DNs_R2_GAM180917_3NP_B01_1_S2


title: DNs_R2_GAM180917_3NP_A11_1_S81


title: DNs_R2_GAM180917_3NP_A06_1_S41


title: DNs_R2_GAM180917_3NP_A09_1_S65


title: DNs_R2_GAM180917_3NP_B02_1_S10


title: DNs_R2_GAM180917_3NP_A08_1_S57


title: DNs_R2_GAM180917_3NP_B12_1_S90


title: DNs_R2_GAM180917_3NP_A07_1_S49


title: DNs_R2_GAM180917_3NP_A01_1_S1


title: DNs_R2_GAM180917_3NP_A05_1_S33


title: DNs_R2_GAM180917_0NP_H12_1_S96

value: water control


title: DNs_R2_GAM180917_0NP_H06_1_S48


title: DNs_R2_GAM180917_3NP_A02_1_S9


title: DNs_R2_GAM180917_3NP_A03_1_S17


title: DNs_R2_GAM180917_3NP_A04_1_S25


title: DNs_R2_GAM180917_3NP_A10_1_S73


title: DNs_R2_GAM180806_3NP_H11_1_S88


title: DNs_R2_GAM180806_3NP_H10_1_S80


title: DNs_R2_GAM180917_0NP_E12_1_S93


title: DNs_R2_GAM180806_3NP_H07_1_S56


title: DNs_R2_GAM180806_3NP_H08_1_S64


title: DNs_R2_GAM180806_3NP_H03_1_S24


title: DNs_R2_GAM180806_3NP_H09_1_S72


title: DNs_R2_GAM180806_3NP_G12_1_S95


title: DNs_R2_GAM180806_3NP_H04_1_S32


title: DNs_R2_GAM180806_3NP_H01_1_S8


title: DNs_R2_GAM180806_3NP_H05_1_S40


title: DNs_R2_GAM180806_3NP_H02_1_S16


title: DNs_R2_GAM180806_3NP_G06_1_S47


title: DNs_R2_GAM180806_3NP_G08_1_S63


title: DNs_R2_GAM180806_3NP_G05_1_S39


title: DNs_R2_GAM180806_3NP_G10_1_S79


title: DNs_R2_GAM180806_3NP_G07_1_S55


title: DNs_R2_GAM180806_3NP_G11_1_S87


title: DNs_R2_GAM180806_3NP_G02_1_S15


title: DNs_R2_GAM180806_3NP_G04_1_S31


title: DNs_R2_GAM180806_3NP_G03_1_S23


title: DNs_R2_GAM180806_3NP_G09_1_S71


title: DNs_R2_GAM180806_3NP_F12_1_S94


title: DNs_R2_GAM180806_3NP_F10_1_S78


title: DNs_R2_GAM180806_3NP_G01_1_S7


title: DNs_R2_GAM180806_3NP_F09_1_S70


title: DNs_R2_GAM180806_3NP_F11_1_S86


title: DNs_R2_GAM180806_3NP_F07_1_S54


title: DNs_R2_GAM180806_3NP_F06_1_S46


title: DNs_R2_GAM180806_3NP_F08_1_S62


title: DNs_R2_GAM180806_3NP_F03_1_S22


title: DNs_R2_GAM180806_3NP_F05_1_S38


title: DNs_R2_GAM180806_3NP_F04_1_S30


title: DNs_R2_GAM180806_3NP_F02_1_S14


title: DNs_R2_GAM180806_3NP_E11_1_S85


title: DNs_R2_GAM180806_3NP_F01_1_S6


title: DNs_R2_GAM180806_3NP_E10_1_S77


title: DNs_R2_GAM180806_3NP_E09_1_S69


title: DNs_R2_GAM180806_3NP_E07_1_S53


title: DNs_R2_GAM180806_3NP_E08_1_S61


title: DNs_R2_GAM180806_3NP_E05_1_S37


title: DNs_R2_GAM180806_3NP_E06_1_S45


title: DNs_R2_GAM180806_3NP_E04_1_S29


title: DNs_R2_GAM180806_3NP_E01_1_S5


title: DNs_R2_GAM180806_3NP_D11_1_S84


title: DNs_R2_GAM180806_3NP_D05_1_S36


title: DNs_R2_GAM180806_3NP_D07_1_S52


title: DNs_R2_GAM180806_3NP_E02_1_S13


title: DNs_R2_GAM180806_3NP_D12_1_S92


title: DNs_R2_GAM180806_3NP_D09_1_S68


title: DNs_R2_GAM180806_3NP_E03_1_S21


title: DNs_R2_GAM180806_3NP_D08_1_S60


title: DNs_R2_GAM180806_3NP_D02_1_S12


title: DNs_R2_GAM180806_3NP_D04_1_S28


title: DNs_R2_GAM180806_3NP_D01_1_S4


title: DNs_R2_GAM180806_3NP_C12_1_S91


title: DNs_R2_GAM180806_3NP_C10_1_S75


title: DNs_R2_GAM180806_3NP_D06_1_S44


title: DNs_R2_GAM180806_3NP_D03_1_S20


title: DNs_R2_GAM180806_3NP_C07_1_S51


title: DNs_R2_GAM180806_3NP_C09_1_S67


title: DNs_R2_GAM180806_3NP_C05_1_S35


title: DNs_R2_GAM180806_3NP_C11_1_S83


title: DNs_R2_GAM180806_3NP_C06_1_S43


title: DNs_R2_GAM180806_3NP_C02_1_S11


title: DNs_R2_GAM180806_3NP_C04_1_S27


title: DNs_R2_GAM180806_3NP_C03_1_S19


title: DNs_R2_GAM180806_3NP_D10_1_S76


title: DNs_R2_GAM180806_3NP_C01_1_S3


title: DNs_R2_GAM180806_3NP_B11_1_S82


title: DNs_R2_GAM180806_3NP_B10_1_S74


title: DNs_R2_GAM180806_3NP_B08_1_S58


title: DNs_R2_GAM180806_3NP_B06_1_S42


title: DNs_R2_GAM180806_3NP_B07_1_S50


title: DNs_R2_GAM180806_3NP_B05_1_S34


title: DNs_R2_GAM180806_3NP_C08_1_S59


title: DNs_R2_GAM180806_3NP_A06_1_S41


title: DNs_R2_GAM180806_3NP_A09_1_S65


title: DNs_R2_GAM180806_3NP_B02_1_S10


title: DNs_R2_GAM180806_3NP_B01_1_S2


title: DNs_R2_GAM180806_3NP_A12_1_S89


title: DNs_R2_GAM180806_3NP_A11_1_S81


title: DNs_R2_GAM180806_3NP_B04_1_S26


title: DNs_R2_GAM180806_3NP_A03_1_S17


title: DNs_R2_GAM180806_3NP_A07_1_S49


title: DNs_R2_GAM180806_3NP_A05_1_S33


title: DNs_R2_GAM180806_3NP_A02_1_S9


title: DNs_R2_GAM180806_3NP_A08_1_S57


title: DNs_R2_GAM180806_3NP_A04_1_S25


title: DNs_R2_GAM180806_3NP_A01_1_S1


title: DNs_R2_GAM180806_3NP_A10_1_S73


title: DNs_R2_GAM180806_0NP_H06_1_S48


title: DNs_R2_GAM180806_0NP_H12_1_S96


title: DNs_R2_GAM180806_3NP_B12_1_S90


title: DNs_R2_GAM180806_3NP_B09_1_S66


title: DNs_R2_GAM180806_0NP_E12_1_S93


title: DNs_R2_GAM180124_3NP_H10_2_S176

value: TH


title: DNs_R2_GAM180806_3NP_B03_1_S18


title: DNs_R2_GAM180124_3NP_G10_2_S175


title: DNs_R2_GAM180124_3NP_H07_2_S152


title: DNs_R2_GAM180124_3NP_F07_2_S150


title: DNs_R2_GAM180124_3NP_F10_2_S174


title: DNs_R2_GAM160824_3NP_H9_2_S92


title: DNs_R2_GAM180124_3NP_D07_2_S148


title: DNs_R2_GAM180124_3NP_A10_2_S169


title: DNs_R2_GAM180124_3NP_E10_2_S173


title: DNs_R2_GAM160824_3NP_H11_2_S108


title: DNs_R2_GAM180124_3NP_B10_2_S170


title: DNs_R2_GAM160824_3NP_H10_2_S100


title: DNs_R2_GAM180124_3NP_A07_2_S145


title: DNs_R2_GAM180124_3NP_B07_2_S146


title: DNs_R2_GAM180124_3NP_C10_2_S171


title: DNs_R2_GAM160824_3NP_H8_2_S84


title: DNs_R2_GAM160824_3NP_H4_2_S52


title: DNs_R2_GAM180124_3NP_G07_2_S151


title: DNs_R2_GAM160824_3NP_H3_2_S44


title: DNs_R2_GAM180124_3NP_D10_2_S172


title: DNs_R2_GAM160824_3NP_H7_2_S76


title: DNs_R2_GAM160824_3NP_G9_2_S91


title: DNs_R2_GAM160824_3NP_G7_2_S75


title: DNs_R2_GAM160824_3NP_G6_2_S67


title: DNs_R2_GAM180124_3NP_E07_2_S149


title: DNs_R2_GAM160824_3NP_G5_2_S59


title: DNs_R2_GAM160824_3NP_G8_2_S83


title: DNs_R2_GAM160824_3NP_H1_2_S28


title: DNs_R2_GAM160824_3NP_G4_2_S51


title: DNs_R2_GAM160824_3NP_G2_2_S35


title: DNs_R2_GAM180124_3NP_C07_2_S147


title: DNs_R2_GAM160824_3NP_G3_2_S43


title: DNs_R2_GAM160824_3NP_H5_2_S60


title: DNs_R2_GAM160824_3NP_H6_2_S68


title: DNs_R2_GAM160824_3NP_H2_2_S36


title: DNs_R2_GAM160824_3NP_G1_2_S27


title: DNs_R2_GAM160824_3NP_F5_2_S58


title: DNs_R2_GAM160824_3NP_G11_2_S107


title: DNs_R2_GAM160824_3NP_F9_2_S90


title: DNs_R2_GAM160824_3NP_F3_2_S42


title: DNs_R2_GAM160824_3NP_G10_2_S99


title: DNs_R2_GAM160824_3NP_F11_2_S106


title: DNs_R2_GAM160824_3NP_E6_2_S65


title: DNs_R2_GAM160824_3NP_F8_2_S82


title: DNs_R2_GAM160824_3NP_F7_2_S74


title: DNs_R2_GAM160824_3NP_F1_2_S26


title: DNs_R2_GAM160824_3NP_F2_2_S34


title: DNs_R2_GAM160824_3NP_D9_2_S88


title: DNs_R2_GAM160824_3NP_D7_2_S72


title: DNs_R2_GAM160824_3NP_F10_2_S98


title: DNs_R2_GAM160824_3NP_F6_2_S66


title: DNs_R2_GAM160824_3NP_E9_2_S89


title: DNs_R2_GAM160824_3NP_E7_2_S73


title: DNs_R2_GAM160824_3NP_D6_2_S64


title: DNs_R2_GAM160824_3NP_E5_2_S57


title: DNs_R2_GAM160824_3NP_E2_2_S33


title: DNs_R2_GAM160824_3NP_E3_2_S41


title: DNs_R2_GAM160824_3NP_E8_2_S81


title: DNs_R2_GAM160824_3NP_D5_2_S56


title: DNs_R2_GAM160824_3NP_E4_2_S49


title: DNs_R2_GAM160824_3NP_E11_2_S105


title: DNs_R2_GAM160824_3NP_E10_2_S97


title: DNs_R2_GAM160824_3NP_F4_2_S50


title: DNs_R2_GAM160824_3NP_E1_2_S25


title: DNs_R2_GAM160824_3NP_D4_2_S48


title: DNs_R2_GAM160824_3NP_D11_2_S104


title: DNs_R2_GAM160824_3NP_D8_2_S80


title: DNs_R2_GAM160824_3NP_D2_2_S32


title: DNs_R2_GAM160824_3NP_C8_2_S79


title: DNs_R2_GAM160824_3NP_C4_2_S47


title: DNs_R2_GAM160824_3NP_C3_2_S39


title: DNs_R2_GAM160824_3NP_C10_2_S95


title: DNs_R2_GAM160824_3NP_C5_2_S55


title: DNs_R2_GAM160824_3NP_C7_2_S71


title: DNs_R2_GAM160824_3NP_B3_2_S38


title: DNs_R2_GAM160824_3NP_B5_2_S54


title: DNs_R2_GAM160824_3NP_C2_2_S31


title: DNs_R2_GAM160824_3NP_B10_2_S94


title: DNs_R2_GAM160824_3NP_B9_2_S86


title: DNs_R2_GAM160824_3NP_C6_2_S63


title: DNs_R2_GAM160824_3NP_B11_2_S102


title: DNs_R2_GAM160824_3NP_C11_2_S103


title: DNs_R2_GAM160824_3NP_B6_2_S62


title: DNs_R2_GAM160824_3NP_B7_2_S70


title: DNs_R2_GAM160824_3NP_B8_2_S78


title: DNs_R2_GAM160824_3NP_C1_2_S23


title: DNs_R2_GAM160824_3NP_B2_2_S30


title: DNs_R2_GAM160824_3NP_B4_2_S46


title: DNs_R2_GAM160824_3NP_C9_2_S87


title: DNs_R2_GAM160824_3NP_D10_2_S96


title: DNs_R2_GAM160824_3NP_D1_2_S24


title: DNs_R2_GAM160824_3NP_B1_2_S22


title: DNs_R2_GAM160824_3NP_D3_2_S40


title: DNs_R2_GAM160824_3NP_A8_2_S77


title: DNs_R2_GAM160824_3NP_A9_2_S85


title: DNs_R2_GAM160824_3NP_A5_2_S53


title: DNs_R2_GAM160824_3NP_A6_2_S61


title: DNs_R2_GAM160824_3NP_A7_2_S69


title: DNs_R2_GAM160824_3NP_A4_2_S45


title: DNs_R2_GAM160824_3NP_A3_2_S37


title: DNs_R2_GAM160824_3NP_A2_2_S29


title: DNs_R2_GAM160824_3NP_A12_2_S109


title: DNs_R2_GAM160811_3NP_E8_S61


title: DNs_R2_GAM160811_3NP_H8_S64


title: DNs_R2_GAM160824_3NP_A10_2_S93


title: DNs_R2_GAM160811_3NP_H7_S56


title: DNs_R2_GAM160811_3NP_G8_S63


title: DNs_R2_GAM160811_3NP_F8_S62


title: DNs_R2_GAM160811_3NP_G7_S55


title: DNs_R2_GAM160824_3NP_A1_2_S21


title: DNs_R2_GAM160811_3NP_F10_S78


title: DNs_R2_GAM160811_3NP_F7_S54


title: DNs_R2_GAM160811_3NP_B7_S50


title: DNs_R2_GAM160811_3NP_E7_S53


title: DNs_R2_GAM160811_3NP_D8_S60


title: DNs_R2_GAM160811_3NP_C8_S59


title: DNs_R2_GAM160811_3NP_B8_S58


title: DNs_R2_GAM160811_3NP_D7_S52


title: DNs_R2_GAM160811_3NP_C7_S51


title: DNs_R2_GAM160811_3NP_C6_S43


title: DNs_R2_GAM160811_3NP_A7_S49


title: DNs_R1_GAM190316_3NP_H10_2_S176

description:
processed data: DNs.R1.mm10.segregation_at50000.2019-12-05.passed_qc.table
processed data: DNs.R1.mm10.NPMI.at50Kb.all_chromosomes.gz
processed data: DNs.R1.mm10.coseg.at250Kb.all_chromosomes.gz

value: WT


title: DNs_R2_GAM160811_3NP_A8_S57


title: DNs_R1_GAM190316_3NP_H09_2_S168


title: DNs_R1_GAM190316_3NP_H10_1_S80


title: DNs_R2_GAM160824_3NP_A11_2_S101


title: DNs_R2_GAM160811_3NP_H6_S48


title: DNs_R1_GAM190316_3NP_H08_2_S160


title: DNs_R1_GAM190316_3NP_H09_1_S72


title: DNs_R2_GAM160811_3NP_D11_S84


title: DNs_R1_GAM190316_3NP_H07_2_S152


title: DNs_R1_GAM190316_3NP_H08_1_S64


title: DNs_R1_GAM190316_3NP_H11_1_S88


title: DNs_R1_GAM190316_3NP_H05_1_S40


title: DNs_R1_GAM190316_3NP_H04_1_S32


title: DNs_R1_GAM190316_3NP_H03_2_S120


title: DNs_R1_GAM190316_3NP_H01_1_S8


title: DNs_R1_GAM190316_3NP_H04_2_S128


title: DNs_R1_GAM190316_3NP_G10_2_S175


title: DNs_R1_GAM190316_3NP_H02_1_S16


title: DNs_R1_GAM190316_3NP_H01_2_S104


title: DNs_R1_GAM190316_3NP_G11_1_S87


title: DNs_R1_GAM190316_3NP_G10_1_S79


title: DNs_R1_GAM190316_3NP_H03_1_S24


title: DNs_R1_GAM190316_3NP_G09_2_S167


title: DNs_R1_GAM190316_3NP_G09_1_S71


title: DNs_R1_GAM190316_3NP_G08_2_S159


title: DNs_R1_GAM190316_3NP_G08_1_S63


title: DNs_R1_GAM190316_3NP_G07_2_S151


title: DNs_R1_GAM190316_3NP_G07_1_S55


title: DNs_R1_GAM190316_3NP_G12_1_S95


title: DNs_R1_GAM190316_3NP_G06_2_S143


title: DNs_R1_GAM190316_3NP_G05_1_S39


title: DNs_R1_GAM190316_3NP_H05_2_S136


title: DNs_R1_GAM190316_3NP_H02_2_S112


title: DNs_R1_GAM190316_3NP_G05_2_S135


title: DNs_R1_GAM190316_3NP_G06_1_S47


title: DNs_R1_GAM190316_3NP_G02_2_S111


title: DNs_R1_GAM190316_3NP_G03_1_S23


title: DNs_R1_GAM190316_3NP_G01_2_S103


title: DNs_R1_GAM190316_3NP_H07_1_S56


title: DNs_R1_GAM190316_3NP_F11_1_S86


title: DNs_R1_GAM190316_3NP_G04_2_S127


title: DNs_R1_GAM190316_3NP_F09_2_S166


title: DNs_R1_GAM190316_3NP_F07_1_S54


title: DNs_R1_GAM190316_3NP_G01_1_S7


title: DNs_R1_GAM190316_3NP_G03_2_S119


title: DNs_R1_GAM190316_3NP_F10_1_S78


title: DNs_R1_GAM190316_3NP_F12_1_S94


title: DNs_R1_GAM190316_3NP_F10_2_S174


title: DNs_R1_GAM190316_3NP_F05_1_S38


title: DNs_R1_GAM190316_3NP_G04_1_S31


title: DNs_R1_GAM190316_3NP_F08_1_S62


title: DNs_R1_GAM190316_3NP_F08_2_S158


title: DNs_R1_GAM190316_3NP_F07_2_S150


title: DNs_R1_GAM190316_3NP_F06_1_S46


title: DNs_R1_GAM190316_3NP_G02_1_S15


title: DNs_R1_GAM190316_3NP_F03_1_S22


title: DNs_R1_GAM190316_3NP_F06_2_S142


title: DNs_R1_GAM190316_3NP_F04_2_S126


title: DNs_R1_GAM190316_3NP_F02_2_S110


title: DNs_R1_GAM190316_3NP_F03_2_S118


title: DNs_R1_GAM190316_3NP_F02_1_S14


title: DNs_R1_GAM190316_3NP_F01_2_S102


title: DNs_R1_GAM190316_3NP_F01_1_S6


title: DNs_R1_GAM190316_3NP_F09_1_S70


title: DNs_R1_GAM190316_3NP_F05_2_S134


title: DNs_R1_GAM190316_3NP_E10_2_S173


title: DNs_R1_GAM190316_3NP_E10_1_S77


title: DNs_R1_GAM190316_3NP_E09_1_S69


title: DNs_R1_GAM190316_3NP_E08_2_S157


title: DNs_R1_GAM190316_3NP_E07_1_S53


title: DNs_R1_GAM190316_3NP_F04_1_S30


title: DNs_R1_GAM190316_3NP_E05_1_S37


title: DNs_R1_GAM190316_3NP_E11_1_S85


title: DNs_R1_GAM190316_3NP_E06_2_S141


title: DNs_R1_GAM190316_3NP_E06_1_S45


title: DNs_R1_GAM190316_3NP_E07_2_S149


title: DNs_R1_GAM190316_3NP_E04_2_S125


title: DNs_R1_GAM190316_3NP_E04_1_S29


title: DNs_R1_GAM190316_3NP_E05_2_S133


title: DNs_R1_GAM190316_3NP_E01_2_S101


title: DNs_R1_GAM190316_3NP_E03_1_S21


title: DNs_R1_GAM190316_3NP_D12_1_S92


title: DNs_R1_GAM190316_3NP_E12_1_S93


title: DNs_R1_GAM190316_3NP_E02_2_S109


title: DNs_R1_GAM190316_3NP_E02_1_S13


title: DNs_R1_GAM190316_3NP_E03_2_S117


title: DNs_R1_GAM190316_3NP_E09_2_S165


title: DNs_R1_GAM190316_3NP_E01_1_S5


title: DNs_R1_GAM190316_3NP_D11_1_S84


title: DNs_R1_GAM190316_3NP_D10_2_S172


title: DNs_R1_GAM190316_3NP_D10_1_S76


title: DNs_R1_GAM190316_3NP_D08_1_S60


title: DNs_R1_GAM190316_3NP_D08_2_S156


title: DNs_R1_GAM190316_3NP_D09_1_S68


title: DNs_R1_GAM190316_3NP_D09_2_S164


title: DNs_R1_GAM190316_3NP_D05_1_S36


title: DNs_R1_GAM190316_3NP_D06_2_S140


title: DNs_R1_GAM190316_3NP_D05_2_S132


title: DNs_R1_GAM190316_3NP_D07_2_S148


title: DNs_R1_GAM190316_3NP_D03_2_S116


title: DNs_R1_GAM190316_3NP_D04_1_S28


title: DNs_R1_GAM190316_3NP_D03_1_S20


title: DNs_R1_GAM190316_3NP_D02_1_S12


title: DNs_R1_GAM190316_3NP_D07_1_S52


title: DNs_R1_GAM190316_3NP_D06_1_S44


title: DNs_R1_GAM190316_3NP_D02_2_S108


title: DNs_R1_GAM190316_3NP_D04_2_S124


title: DNs_R1_GAM190316_3NP_D01_2_S100


title: DNs_R1_GAM190316_3NP_C12_1_S91


title: DNs_R1_GAM190316_3NP_D01_1_S4


title: DNs_R1_GAM190316_3NP_C10_2_S171


title: DNs_R1_GAM190316_3NP_C10_1_S75


title: DNs_R1_GAM190316_3NP_C09_1_S67


title: DNs_R1_GAM190316_3NP_C11_1_S83


title: DNs_R1_GAM190316_3NP_C07_1_S51


title: DNs_R1_GAM190316_3NP_C08_1_S59


title: DNs_R1_GAM190316_3NP_C08_2_S155


title: DNs_R1_GAM190316_3NP_C07_2_S147


title: DNs_R1_GAM190316_3NP_C06_2_S139


title: DNs_R1_GAM190316_3NP_C09_2_S163


title: DNs_R1_GAM190316_3NP_C04_2_S123


title: DNs_R1_GAM190316_3NP_C05_1_S35


title: DNs_R1_GAM190316_3NP_C06_1_S43


title: DNs_R1_GAM190316_3NP_C05_2_S131


title: DNs_R1_GAM190316_3NP_C02_2_S107


title: DNs_R1_GAM190316_3NP_C03_2_S115


title: DNs_R1_GAM190316_3NP_C04_1_S27


title: DNs_R1_GAM190316_3NP_C03_1_S19


title: DNs_R1_GAM190316_3NP_C02_1_S11


title: DNs_R1_GAM190316_3NP_B12_1_S90


title: DNs_R1_GAM190316_3NP_C01_1_S3


title: DNs_R1_GAM190316_3NP_C01_2_S99


title: DNs_R1_GAM190316_3NP_B10_2_S170


title: DNs_R1_GAM190316_3NP_B10_1_S74


title: DNs_R1_GAM190316_3NP_B11_1_S82


title: DNs_R1_GAM190316_3NP_B08_1_S58


title: DNs_R1_GAM190316_3NP_B07_2_S146


title: DNs_R1_GAM190316_3NP_B07_1_S50


title: DNs_R1_GAM190316_3NP_B09_2_S162


title: DNs_R1_GAM190316_3NP_B08_2_S154


title: DNs_R1_GAM190316_3NP_B04_2_S122


title: DNs_R1_GAM190316_3NP_B05_2_S130


title: DNs_R1_GAM190316_3NP_B06_2_S138


title: DNs_R1_GAM190316_3NP_B06_1_S42


title: DNs_R1_GAM190316_3NP_B04_1_S26


title: DNs_R1_GAM190316_3NP_B03_2_S114


title: DNs_R1_GAM190316_3NP_B03_1_S18


title: DNs_R1_GAM190316_3NP_B05_1_S34


title: DNs_R1_GAM190316_3NP_B02_2_S106


title: DNs_R1_GAM190316_3NP_B01_1_S2


title: DNs_R1_GAM190316_3NP_B01_2_S98


title: DNs_R1_GAM190316_3NP_B02_1_S10


title: DNs_R1_GAM190316_3NP_A10_1_S73


title: DNs_R1_GAM190316_3NP_B09_1_S66


title: DNs_R1_GAM190316_3NP_A10_2_S169


title: DNs_R1_GAM190316_3NP_A09_1_S65


title: DNs_R1_GAM190316_3NP_A07_2_S145


title: DNs_R1_GAM190316_3NP_A11_1_S81


title: DNs_R1_GAM190316_3NP_A12_1_S89


title: DNs_R1_GAM190316_3NP_A08_1_S57


title: DNs_R1_GAM190316_3NP_A08_2_S153


title: DNs_R1_GAM190316_3NP_A09_2_S161


title: DNs_R1_GAM190316_3NP_A07_1_S49


title: DNs_R1_GAM190316_3NP_A05_1_S33


title: DNs_R1_GAM190316_3NP_A05_2_S129


title: DNs_R1_GAM190316_3NP_A06_1_S41


title: DNs_R1_GAM190316_3NP_A04_2_S121


title: DNs_R1_GAM190316_3NP_A06_2_S137


title: DNs_R1_GAM190316_3NP_A02_1_S9


title: DNs_R1_GAM190226_3NP_H03_2_S120


title: DNs_R1_GAM190316_3NP_A04_1_S25


title: DNs_R1_GAM190316_3NP_A01_2_S97


title: DNs_R1_GAM190226_3NP_H05_2_S136


title: DNs_R1_GAM190226_3NP_G12_2_S191


title: DNs_R1_GAM190226_3NP_H11_2_S184


title: DNs_R1_GAM190316_3NP_A03_2_S113


title: DNs_R1_GAM190226_3NP_H02_2_S112


title: DNs_R1_GAM190316_3NP_A01_1_S1


title: DNs_R1_GAM190316_0NP_H06_1_S48


title: DNs_R1_GAM190226_3NP_H07_2_S152


title: DNs_R1_GAM190226_3NP_H08_2_S160


title: DNs_R1_GAM190316_0NP_H06_2_S144


title: DNs_R1_GAM190316_3NP_A03_1_S17


title: DNs_R1_GAM190226_3NP_H04_2_S128


title: DNs_R1_GAM190226_3NP_H09_2_S168


title: DNs_R1_GAM190316_0NP_H12_1_S96


title: DNs_R1_GAM190226_3NP_G09_2_S167


title: DNs_R1_GAM190226_3NP_G07_2_S151


title: DNs_R1_GAM190226_3NP_G08_2_S159


title: DNs_R1_GAM190226_3NP_G10_2_S175


title: DNs_R1_GAM190226_3NP_G04_2_S127


title: DNs_R1_GAM190226_3NP_G06_2_S143


title: DNs_R1_GAM190226_3NP_H10_2_S176


title: DNs_R1_GAM190316_3NP_A02_2_S105


title: DNs_R1_GAM190226_3NP_H01_2_S104


title: DNs_R1_GAM190316_3NP_E08_1_S61


title: DNs_R1_GAM190226_3NP_G11_2_S183


title: DNs_R1_GAM190226_3NP_G03_2_S119


title: DNs_R1_GAM190226_3NP_G05_2_S135


title: DNs_R1_GAM190226_3NP_G01_2_S103


title: DNs_R1_GAM190226_3NP_F07_2_S150


title: DNs_R1_GAM190226_3NP_F09_2_S166


title: DNs_R1_GAM190226_3NP_E10_2_S173


title: DNs_R1_GAM190226_3NP_E08_2_S157


title: DNs_R1_GAM190226_3NP_F03_2_S118


title: DNs_R1_GAM190226_3NP_F04_2_S126


title: DNs_R1_GAM190226_3NP_F05_2_S134


title: DNs_R1_GAM190226_3NP_E03_2_S117


title: DNs_R1_GAM190226_3NP_E04_2_S125


title: DNs_R1_GAM190226_3NP_E06_2_S141


title: DNs_R1_GAM190226_3NP_F11_2_S182


title: DNs_R1_GAM190226_3NP_F08_2_S158


title: DNs_R1_GAM190226_3NP_E11_2_S181


title: DNs_R1_GAM190226_3NP_F06_2_S142


title: DNs_R1_GAM190226_3NP_E02_2_S109


title: DNs_R1_GAM190226_3NP_E05_2_S133


title: DNs_R1_GAM190226_3NP_E01_2_S101


title: DNs_R1_GAM190226_3NP_G02_2_S111


title: DNs_R1_GAM190226_3NP_F12_2_S190


title: DNs_R1_GAM190226_3NP_F02_2_S110


title: DNs_R1_GAM190226_3NP_E12_2_S189


title: DNs_R1_GAM190226_3NP_E09_2_S165


title: DNs_R1_GAM190226_3NP_F10_2_S174


title: DNs_R1_GAM190226_3NP_D11_2_S180


title: DNs_R1_GAM190226_3NP_E07_2_S149


title: DNs_R1_GAM190226_3NP_D10_2_S172


title: DNs_R1_GAM190226_3NP_D08_2_S156


title: DNs_R1_GAM190226_3NP_D09_2_S164


title: DNs_R1_GAM190226_3NP_D03_2_S116


title: DNs_R1_GAM190226_3NP_D02_2_S108


title: DNs_R1_GAM190226_3NP_D01_2_S100


title: DNs_R1_GAM190226_3NP_D07_2_S148


title: DNs_R1_GAM190226_3NP_D05_2_S132


title: DNs_R1_GAM190226_3NP_D06_2_S140


title: DNs_R1_GAM190226_3NP_D04_2_S124


title: DNs_R1_GAM190226_3NP_C08_2_S155


title: DNs_R1_GAM190226_3NP_C12_2_S187


title: DNs_R1_GAM190226_3NP_C07_2_S147


title: DNs_R1_GAM190226_3NP_F01_2_S102


title: DNs_R1_GAM190226_3NP_C04_2_S123


title: DNs_R1_GAM190226_3NP_C05_2_S131


title: DNs_R1_GAM190226_3NP_C06_2_S139


title: DNs_R1_GAM190226_3NP_C09_2_S163


title: DNs_R1_GAM190226_3NP_D12_2_S188


title: DNs_R1_GAM190226_3NP_C02_2_S107


title: DNs_R1_GAM190226_3NP_C03_2_S115


title: DNs_R1_GAM190226_3NP_C01_2_S99


title: DNs_R1_GAM190226_3NP_B09_2_S162


title: DNs_R1_GAM190226_3NP_B11_2_S178


title: DNs_R1_GAM190226_3NP_B08_2_S154


title: DNs_R1_GAM190226_3NP_B10_2_S170


title: DNs_R1_GAM190226_3NP_B12_2_S186


title: DNs_R1_GAM190226_3NP_B06_2_S138


title: DNs_R1_GAM190226_3NP_B04_2_S122


title: DNs_R1_GAM190226_3NP_B03_2_S114


title: DNs_R1_GAM190226_3NP_B07_2_S146


title: DNs_R1_GAM190226_3NP_B01_2_S98


title: DNs_R1_GAM190226_3NP_B02_2_S106


title: DNs_R1_GAM190226_3NP_C11_2_S179


title: DNs_R1_GAM190226_3NP_C10_2_S171


title: DNs_R1_GAM190226_3NP_A10_2_S169


title: DNs_R1_GAM190226_3NP_A11_2_S177


title: DNs_R1_GAM190226_3NP_A09_2_S161


title: DNs_R1_GAM190226_3NP_A05_2_S129


title: DNs_R1_GAM190226_3NP_A08_2_S153


title: DNs_R1_GAM190226_3NP_A03_2_S113


title: DNs_R1_GAM190226_3NP_A07_2_S145


title: DNs_R1_GAM190226_0NP_H12_2_S192


title: DNs_R1_GAM190226_0NP_H06_2_S144


title: DNs_R1_GAM190226_3NP_A02_2_S105


title: DNs_R1_GAM190226_3NP_A06_2_S137


title: DNs_R1_GAM190212_3NP_H08_2_S160


title: DNs_R1_GAM190212_3NP_H10_2_S176


title: DNs_R1_GAM190212_3NP_H09_2_S168


title: DNs_R1_GAM190226_3NP_B05_2_S130


title: DNs_R1_GAM190226_3NP_A01_2_S97


title: DNs_R1_GAM190212_3NP_H11_2_S184


title: DNs_R1_GAM190212_3NP_H05_2_S136


title: DNs_R1_GAM190212_3NP_H07_2_S152


title: DNs_R1_GAM190212_3NP_H04_2_S128


title: DNs_R1_GAM190226_3NP_A12_2_S185


title: DNs_R1_GAM190212_3NP_H02_2_S112


title: DNs_R1_GAM190212_3NP_H03_2_S120


title: DNs_R1_GAM190212_3NP_G12_2_S191


title: DNs_R1_GAM190212_3NP_G08_2_S159


title: DNs_R1_GAM190212_3NP_G10_2_S175


title: DNs_R1_GAM190212_3NP_H01_2_S104


title: DNs_R1_GAM190212_3NP_G07_2_S151


title: DNs_R1_GAM190212_3NP_G09_2_S167


title: DNs_R1_GAM190226_3NP_A04_2_S121


title: DNs_R1_GAM190212_3NP_G11_2_S183


title: DNs_R1_GAM190212_3NP_G05_2_S135


title: DNs_R1_GAM190212_3NP_G06_2_S143


title: DNs_R1_GAM190212_3NP_G03_2_S119


title: DNs_R1_GAM190212_3NP_G01_2_S103


title: DNs_R1_GAM190212_3NP_G04_2_S127


title: DNs_R1_GAM190212_3NP_F11_2_S182


title: DNs_R1_GAM190212_3NP_F10_2_S174


title: DNs_R1_GAM190212_3NP_F07_2_S150


title: DNs_R1_GAM190212_3NP_F12_2_S190


title: DNs_R1_GAM190212_3NP_F08_2_S158


title: DNs_R1_GAM190212_3NP_F06_2_S142


title: DNs_R1_GAM190212_3NP_F03_2_S118


title: DNs_R1_GAM190212_3NP_F04_2_S126


title: DNs_R1_GAM190212_3NP_F02_2_S110


title: DNs_R1_GAM190212_3NP_F05_2_S134


title: DNs_R1_GAM190212_3NP_E11_2_S181


title: DNs_R1_GAM190212_3NP_F01_2_S102


title: DNs_R1_GAM190212_3NP_E12_2_S189


title: DNs_R1_GAM190212_3NP_E10_2_S173


title: DNs_R1_GAM190212_3NP_G02_2_S111


title: DNs_R1_GAM190212_3NP_E05_2_S133


title: DNs_R1_GAM190212_3NP_E07_2_S149


title: DNs_R1_GAM190212_3NP_E08_2_S157


title: DNs_R1_GAM190212_3NP_E03_2_S117


title: DNs_R1_GAM190212_3NP_E02_2_S109


title: DNs_R1_GAM190212_3NP_E04_2_S125


title: DNs_R1_GAM190212_3NP_D11_2_S180


title: DNs_R1_GAM190212_3NP_F09_2_S166


title: DNs_R1_GAM190212_3NP_D08_2_S156


title: DNs_R1_GAM190212_3NP_D10_2_S172


title: DNs_R1_GAM190212_3NP_D07_2_S148


title: DNs_R1_GAM190212_3NP_D12_2_S188


title: DNs_R1_GAM190212_3NP_D05_2_S132


title: DNs_R1_GAM190212_3NP_D09_2_S164


title: DNs_R1_GAM190212_3NP_D02_2_S108


title: DNs_R1_GAM190212_3NP_E09_2_S165


title: DNs_R1_GAM190212_3NP_D01_2_S100


title: DNs_R1_GAM190212_3NP_E06_2_S141


title: DNs_R1_GAM190212_3NP_D03_2_S116


title: DNs_R1_GAM190212_3NP_D04_2_S124


title: DNs_R1_GAM190212_3NP_C08_2_S155


title: DNs_R1_GAM190212_3NP_C10_2_S171


title: DNs_R1_GAM190212_3NP_C07_2_S147


title: DNs_R1_GAM190212_3NP_C11_2_S179


title: DNs_R1_GAM190212_3NP_C06_2_S139


title: DNs_R1_GAM190212_3NP_E01_2_S101


title: DNs_R1_GAM190212_3NP_C03_2_S115


title: DNs_R1_GAM190212_3NP_C05_2_S131


title: DNs_R1_GAM190212_3NP_C02_2_S107


title: DNs_R1_GAM190212_3NP_C04_2_S123


title: DNs_R1_GAM190212_3NP_B11_2_S178


title: DNs_R1_GAM190212_3NP_B12_2_S186


title: DNs_R1_GAM190212_3NP_C01_2_S99


title: DNs_R1_GAM190212_3NP_D06_2_S140


title: DNs_R1_GAM190212_3NP_B09_2_S162


title: DNs_R1_GAM190212_3NP_C12_2_S187


title: DNs_R1_GAM190212_3NP_B07_2_S146


title: DNs_R1_GAM190212_3NP_B05_2_S130


title: DNs_R1_GAM190212_3NP_B06_2_S138


title: DNs_R1_GAM190212_3NP_B04_2_S122


title: DNs_R1_GAM190212_3NP_B02_2_S106


title: DNs_R1_GAM190212_3NP_A12_2_S185


title: DNs_R1_GAM190212_3NP_C09_2_S163


title: DNs_R1_GAM190212_3NP_A11_2_S177


title: DNs_R1_GAM190212_3NP_A09_2_S161


title: DNs_R1_GAM190212_3NP_A10_2_S169


title: DNs_R1_GAM190212_3NP_A05_2_S129


title: DNs_R1_GAM190212_3NP_A06_2_S137


title: DNs_R1_GAM190212_3NP_A07_2_S145


title: DNs_R1_GAM190212_3NP_A08_2_S153


title: DNs_R1_GAM190212_3NP_B10_2_S170


title: DNs_R1_GAM190212_3NP_A03_2_S113


title: DNs_R1_GAM190212_3NP_A04_2_S121


title: DNs_R1_GAM190212_3NP_B08_2_S154


title: DNs_R1_GAM190212_3NP_A02_2_S105


title: DNs_R1_GAM190212_0NP_H12_2_S192


title: DNs_R1_GAM190212_3NP_A01_2_S97


title: DNs_R1_GAM190114_3NP_H11_1_S88


title: DNs_R1_GAM190212_3NP_B03_2_S114


title: DNs_R1_GAM190114_3NP_H10_2_S176


title: DNs_R1_GAM190114_3NP_H09_2_S168


title: DNs_R1_GAM190212_3NP_B01_2_S98


title: DNs_R1_GAM190114_3NP_H08_2_S160


title: DNs_R1_GAM190114_3NP_H09_1_S72


title: DNs_R1_GAM190114_3NP_H07_1_S56


title: DNs_R1_GAM190114_3NP_H07_2_S152


title: DNs_R1_GAM190114_3NP_H05_2_S136


title: DNs_R1_GAM190114_3NP_H06_2_S144


title: DNs_R1_GAM190114_3NP_H10_1_S80


title: DNs_R1_GAM190114_3NP_H05_1_S40


title: DNs_R1_GAM190114_3NP_H04_1_S32


title: DNs_R1_GAM190114_3NP_H04_2_S128


title: DNs_R1_GAM190114_3NP_H03_1_S24


title: DNs_R1_GAM190114_3NP_H02_1_S16


title: DNs_R1_GAM190212_0NP_H06_2_S144


title: DNs_R1_GAM190114_3NP_H11_2_S184


title: DNs_R1_GAM190114_3NP_H01_1_S8


title: DNs_R1_GAM190114_3NP_H01_2_S104


title: DNs_R1_GAM190114_3NP_G12_2_S191


title: DNs_R1_GAM190114_3NP_H02_2_S112


title: DNs_R1_GAM190114_3NP_G11_2_S183


title: DNs_R1_GAM190114_3NP_G10_2_S175


title: DNs_R1_GAM190114_3NP_G10_1_S79


title: DNs_R1_GAM190114_3NP_G09_2_S167


title: DNs_R1_GAM190114_3NP_H08_1_S64


title: DNs_R1_GAM190114_3NP_G09_1_S71


title: DNs_R1_GAM190114_3NP_G08_1_S63


title: DNs_R1_GAM190114_3NP_G11_1_S87


title: DNs_R1_GAM190114_3NP_G08_2_S159


title: DNs_R1_GAM190114_3NP_G07_1_S55


title: DNs_R1_GAM190114_3NP_G05_2_S135


title: DNs_R1_GAM190114_3NP_G06_1_S47


title: DNs_R1_GAM190114_3NP_G07_2_S151


title: DNs_R1_GAM190114_3NP_G05_1_S39


title: DNs_R1_GAM190114_3NP_G03_2_S119


title: DNs_R1_GAM190114_3NP_G04_1_S31


title: DNs_R1_GAM190114_3NP_G04_2_S127


title: DNs_R1_GAM190114_3NP_G03_1_S23


title: DNs_R1_GAM190114_3NP_G12_1_S95


title: DNs_R1_GAM190114_3NP_G02_2_S111


title: DNs_R1_GAM190114_3NP_G02_1_S15


title: DNs_R1_GAM190114_3NP_G01_1_S7


title: DNs_R1_GAM190114_3NP_G01_2_S103


title: DNs_R1_GAM190114_3NP_F11_1_S86


title: DNs_R1_GAM190114_3NP_F12_2_S190


title: DNs_R1_GAM190114_3NP_F11_2_S182


title: DNs_R1_GAM190114_3NP_F12_1_S94


title: DNs_R1_GAM190114_3NP_F10_2_S174


title: DNs_R1_GAM190114_3NP_F09_2_S166


title: DNs_R1_GAM190114_3NP_F10_1_S78


title: DNs_R1_GAM190114_3NP_G06_2_S143


title: DNs_R1_GAM190114_3NP_F08_1_S62


title: DNs_R1_GAM190114_3NP_F09_1_S70


title: DNs_R1_GAM190114_3NP_F07_2_S150


title: DNs_R1_GAM190114_3NP_F07_1_S54


title: DNs_R1_GAM190114_3NP_F06_1_S46


title: DNs_R1_GAM190114_3NP_F05_2_S134


title: DNs_R1_GAM190114_3NP_F04_1_S30


title: DNs_R1_GAM190114_3NP_F08_2_S158


title: DNs_R1_GAM190114_3NP_F04_2_S126


title: DNs_R1_GAM190114_3NP_F06_2_S142


title: DNs_R1_GAM190114_3NP_F05_1_S38


title: DNs_R1_GAM190114_3NP_F03_1_S22


title: DNs_R1_GAM190114_3NP_F02_1_S14


title: DNs_R1_GAM190114_3NP_F03_2_S118


title: DNs_R1_GAM190114_3NP_F01_2_S102


title: DNs_R1_GAM190114_3NP_F02_2_S110


title: DNs_R1_GAM190114_3NP_F01_1_S6


title: DNs_R1_GAM190114_3NP_E12_2_S189


title: DNs_R1_GAM190114_3NP_E11_2_S181


title: DNs_R1_GAM190114_3NP_E11_1_S85


title: DNs_R1_GAM190114_3NP_E10_2_S173


title: DNs_R1_GAM190114_3NP_E12_1_S93


title: DNs_R1_GAM190114_3NP_E08_2_S157


title: DNs_R1_GAM190114_3NP_E10_1_S77


title: DNs_R1_GAM190114_3NP_E07_2_S149


title: DNs_R1_GAM190114_3NP_E09_2_S165


title: DNs_R1_GAM190114_3NP_E08_1_S61


title: DNs_R1_GAM190114_3NP_E07_1_S53


title: DNs_R1_GAM190114_3NP_E05_1_S37


title: DNs_R1_GAM190114_3NP_E06_2_S141


title: DNs_R1_GAM190114_3NP_E09_1_S69


title: DNs_R1_GAM190114_3NP_E06_1_S45


title: DNs_R1_GAM190114_3NP_E04_2_S125


title: DNs_R1_GAM190114_3NP_E01_1_S5


title: DNs_R1_GAM190114_3NP_E04_1_S29


title: DNs_R1_GAM190114_3NP_E05_2_S133


title: DNs_R1_GAM190114_3NP_E02_1_S13


title: DNs_R1_GAM190114_3NP_E03_2_S117


title: DNs_R1_GAM190114_3NP_D12_1_S92


title: DNs_R1_GAM190114_3NP_D11_2_S180


title: DNs_R1_GAM190114_3NP_E03_1_S21


title: DNs_R1_GAM190114_3NP_E01_2_S101


title: DNs_R1_GAM190114_3NP_E02_2_S109


title: DNs_R1_GAM190114_3NP_D09_2_S164


title: DNs_R1_GAM190114_3NP_D08_1_S60


title: DNs_R1_GAM190114_3NP_D12_2_S188


title: DNs_R1_GAM190114_3NP_D06_1_S44


title: DNs_R1_GAM190114_3NP_D11_1_S84


title: DNs_R1_GAM190114_3NP_D10_1_S76


title: DNs_R1_GAM190114_3NP_D10_2_S172


title: DNs_R1_GAM190114_3NP_D07_2_S148


title: DNs_R1_GAM190114_3NP_D05_1_S36


title: DNs_R1_GAM190114_3NP_D07_1_S52


title: DNs_R1_GAM190114_3NP_D06_2_S140


title: DNs_R1_GAM190114_3NP_D05_2_S132


title: DNs_R1_GAM190114_3NP_D03_1_S20


title: DNs_R1_GAM190114_3NP_D04_1_S28


title: DNs_R1_GAM190114_3NP_D01_2_S100


title: DNs_R1_GAM190114_3NP_D04_2_S124


title: DNs_R1_GAM190114_3NP_D02_2_S108


title: DNs_R1_GAM190114_3NP_D01_1_S4


title: DNs_R1_GAM190114_3NP_D09_1_S68


title: DNs_R1_GAM190114_3NP_D02_1_S12


title: DNs_R1_GAM190114_3NP_C12_2_S187


title: DNs_R1_GAM190114_3NP_C10_1_S75


title: DNs_R1_GAM190114_3NP_C11_1_S83


title: DNs_R1_GAM190114_3NP_C09_2_S163


title: DNs_R1_GAM190114_3NP_C08_1_S59


title: DNs_R1_GAM190114_3NP_C09_1_S67


title: DNs_R1_GAM190114_3NP_C07_2_S147


title: DNs_R1_GAM190114_3NP_C08_2_S155


title: DNs_R1_GAM190114_3NP_C05_1_S35


title: DNs_R1_GAM190114_3NP_C05_2_S131


title: DNs_R1_GAM190114_3NP_D03_2_S116


title: DNs_R1_GAM190114_3NP_C04_2_S123


title: DNs_R1_GAM190114_3NP_C04_1_S27


title: DNs_R1_GAM190114_3NP_C03_2_S115


title: DNs_R1_GAM190114_3NP_C03_1_S19


title: DNs_R1_GAM190114_3NP_C01_2_S99


title: DNs_R1_GAM190114_3NP_B12_1_S90


title: DNs_R1_GAM190114_3NP_B11_2_S178


title: DNs_R1_GAM190114_3NP_C06_1_S43


title: DNs_R1_GAM190114_3NP_B10_1_S74


title: DNs_R1_GAM190114_3NP_B12_2_S186


title: DNs_R1_GAM190114_3NP_B10_2_S170


title: DNs_R1_GAM190114_3NP_C01_1_S3


title: DNs_R1_GAM190114_3NP_B11_1_S82


title: DNs_R1_GAM190114_3NP_C02_1_S11


title: DNs_R1_GAM190114_3NP_B09_1_S66


title: DNs_R1_GAM190114_3NP_C06_2_S139


title: DNs_R1_GAM190114_3NP_B08_1_S58


title: DNs_R1_GAM190114_3NP_C07_1_S51


title: DNs_R1_GAM190114_3NP_B07_1_S50


title: DNs_R1_GAM190114_3NP_D08_2_S156


title: DNs_R1_GAM190114_3NP_B06_2_S138


title: DNs_R1_GAM190114_3NP_B05_2_S130


title: DNs_R1_GAM190114_3NP_C02_2_S107


title: DNs_R1_GAM190114_3NP_B06_1_S42


title: DNs_R1_GAM190114_3NP_B03_2_S114


title: DNs_R1_GAM190114_3NP_B04_1_S26


title: DNs_R1_GAM190114_3NP_B05_1_S34


title: DNs_R1_GAM190114_3NP_B09_2_S162


title: DNs_R1_GAM190114_3NP_B04_2_S122


title: DNs_R1_GAM190114_3NP_B03_1_S18


title: DNs_R1_GAM190114_3NP_B01_1_S2


title: DNs_R1_GAM190114_3NP_B02_1_S10


title: DNs_R1_GAM190114_3NP_B02_2_S106


title: DNs_R1_GAM190114_3NP_B01_2_S98


title: DNs_R1_GAM190114_3NP_A12_1_S89


title: DNs_R1_GAM190114_3NP_B08_2_S154


title: DNs_R1_GAM190114_3NP_A11_1_S81


title: DNs_R1_GAM190114_3NP_A12_2_S185


title: DNs_R1_GAM190114_3NP_A09_2_S161


title: DNs_R1_GAM190114_3NP_A10_2_S169


title: DNs_R1_GAM190114_3NP_A08_2_S153


title: DNs_R1_GAM190114_3NP_A10_1_S73


title: DNs_R1_GAM190114_3NP_B07_2_S146


title: DNs_R1_GAM190114_3NP_A07_2_S145


title: DNs_R1_GAM190114_3NP_A06_2_S137


title: DNs_R1_GAM190114_3NP_A06_1_S41


title: DNs_R1_GAM190114_3NP_A05_2_S129


title: DNs_R1_GAM190114_3NP_A04_1_S25


title: DNs_R1_GAM190114_3NP_A05_1_S33


title: DNs_R1_GAM190114_3NP_A04_2_S121


title: DNs_R1_GAM190114_3NP_A03_2_S113


title: DNs_R1_GAM190114_3NP_A11_2_S177


title: DNs_R1_GAM190114_3NP_A03_1_S17


title: DNs_R1_GAM190114_3NP_A02_2_S105


title: DNs_R1_GAM190114_3NP_A02_1_S9


title: DNs_R1_GAM190114_3NP_A01_2_S97


title: DNs_R1_GAM190114_0NP_H12_2_S192


title: DNs_R1_GAM190114_3NP_A09_1_S65


title: DNs_R1_GAM190114_3NP_A01_1_S1


title: DNs_R1_GAM190107_3NP_H11_1_S88


title: DNs_R1_GAM190114_0NP_H06_1_S48


title: DNs_R1_GAM190107_3NP_H08_1_S64


title: DNs_R1_GAM190107_3NP_H09_1_S72


title: DNs_R1_GAM190107_3NP_H10_1_S80


title: DNs_R1_GAM190107_3NP_H05_1_S40


title: DNs_R1_GAM190114_3NP_A07_1_S49


title: DNs_R1_GAM190107_3NP_H03_1_S24


title: DNs_R1_GAM190107_3NP_H02_1_S16


title: DNs_R1_GAM190107_3NP_H01_1_S8


title: DNs_R1_GAM190107_3NP_G12_1_S95


title: DNs_R1_GAM190107_3NP_G09_1_S71


title: DNs_R1_GAM190114_0NP_H12_1_S96


title: DNs_R1_GAM190107_3NP_G08_1_S63


title: DNs_R1_GAM190107_3NP_G07_1_S55


title: DNs_R1_GAM190107_3NP_G04_1_S31


title: DNs_R1_GAM190107_3NP_G06_1_S47


title: DNs_R1_GAM190107_3NP_G05_1_S39


title: DNs_R1_GAM190107_3NP_G03_1_S23


title: DNs_R1_GAM190107_3NP_G01_1_S7


title: DNs_R1_GAM190107_3NP_H07_1_S56


title: DNs_R1_GAM190107_3NP_F10_1_S78


title: DNs_R1_GAM190107_3NP_F12_1_S94


title: DNs_R1_GAM190107_3NP_F09_1_S70


title: DNs_R1_GAM190107_3NP_G02_1_S15


title: DNs_R1_GAM190107_3NP_F11_1_S86


title: DNs_R1_GAM190107_3NP_F06_1_S46


title: DNs_R1_GAM190107_3NP_H04_1_S32


title: DNs_R1_GAM190107_3NP_F07_1_S54


title: DNs_R1_GAM190107_3NP_F08_1_S62


title: DNs_R1_GAM190114_0NP_H03_2_S120


title: DNs_R1_GAM190107_3NP_F04_1_S30


title: DNs_R1_GAM190107_3NP_F05_1_S38


title: DNs_R1_GAM190107_3NP_G10_1_S79


title: DNs_R1_GAM190107_3NP_F03_1_S22


title: DNs_R1_GAM190107_3NP_F01_1_S6


title: DNs_R1_GAM190107_3NP_F02_1_S14


title: DNs_R1_GAM190107_3NP_E12_1_S93


title: DNs_R1_GAM190107_3NP_E10_1_S77


title: DNs_R1_GAM190107_3NP_E11_1_S85


title: DNs_R1_GAM190107_3NP_E09_1_S69


title: DNs_R1_GAM190107_3NP_E08_1_S61


title: DNs_R1_GAM190107_3NP_E04_1_S29


title: DNs_R1_GAM190107_3NP_E07_1_S53


title: DNs_R1_GAM190107_3NP_E01_1_S5


title: DNs_R1_GAM190107_3NP_D09_1_S68


title: DNs_R1_GAM190107_3NP_D11_1_S84


title: DNs_R1_GAM190107_3NP_D08_1_S60


title: DNs_R1_GAM190107_3NP_D12_1_S92


title: DNs_R1_GAM190107_3NP_D07_1_S52


title: DNs_R1_GAM190107_3NP_D10_1_S76


title: DNs_R1_GAM190107_3NP_E03_1_S21


title: DNs_R1_GAM190107_3NP_D05_1_S36


title: DNs_R1_GAM190107_3NP_D03_1_S20


title: DNs_R1_GAM190107_3NP_D04_1_S28


title: DNs_R1_GAM190107_3NP_D02_1_S12


title: DNs_R1_GAM190107_3NP_D01_1_S4


title: DNs_R1_GAM190107_3NP_E06_1_S45


title: DNs_R1_GAM190107_3NP_C12_1_S91


title: DNs_R1_GAM190107_3NP_C11_1_S83


title: DNs_R1_GAM190107_3NP_C08_1_S59


title: DNs_R1_GAM190107_3NP_C10_1_S75


title: DNs_R1_GAM190107_3NP_E02_1_S13


title: DNs_R1_GAM190114_3NP_C10_2_S171


title: DNs_R1_GAM190107_3NP_C09_1_S67


title: DNs_R1_GAM190107_3NP_C07_1_S51


title: DNs_R1_GAM190107_3NP_C06_1_S43


title: DNs_R1_GAM190107_3NP_C04_1_S27


title: DNs_R1_GAM190107_3NP_C03_1_S19


title: DNs_R1_GAM190107_3NP_C02_1_S11


title: DNs_R1_GAM190107_3NP_B12_1_S90


title: DNs_R1_GAM190114_3NP_C11_2_S179


title: DNs_R1_GAM190107_3NP_D06_1_S44


title: DNs_R1_GAM190107_3NP_B11_1_S82


title: DNs_R1_GAM190107_3NP_B10_1_S74


title: DNs_R1_GAM190107_3NP_C01_1_S3


title: DNs_R1_GAM190107_3NP_B08_1_S58


title: DNs_R1_GAM190107_3NP_B09_1_S66


title: DNs_R1_GAM190107_3NP_B07_1_S50


title: DNs_R1_GAM190107_3NP_B06_1_S42


title: DNs_R1_GAM190107_3NP_B04_1_S26


title: DNs_R1_GAM190107_3NP_A12_1_S89


title: DNs_R1_GAM190107_3NP_A11_1_S81


title: DNs_R1_GAM190107_3NP_B01_1_S2


title: DNs_R1_GAM190107_3NP_B03_1_S18


title: DNs_R1_GAM190107_3NP_A09_1_S65


title: DNs_R1_GAM190107_3NP_A05_1_S33


title: DNs_R1_GAM190107_3NP_A10_1_S73


title: DNs_R1_GAM190107_3NP_A06_1_S41


title: DNs_R1_GAM190107_3NP_A08_1_S57


title: DNs_R1_GAM190107_3NP_A01_1_S1


title: DNs_R1_GAM190107_3NP_C05_1_S35


title: DNs_R1_GAM190107_0NP_H06_1_S48


title: DNs_R1_GAM190107_3NP_A04_1_S25


title: OLGs_GAM181213_3NP_H12_1_S96

description:
processed data: OLGs.mm10.Repl1.segregation_at50000.2019-12-05.passed_qc.table
processed data: OLGs.mm10.NPMI.at50Kb.all_chromosomes.gz
processed data: OLGs.mm10.coseg.at250Kb.all_chromosomes.gz

source_name: oligodendrocytes

value: somatosensory cortex

value: oligodendrocytes

value: GFP/Pan-histo


title: DNs_R1_GAM190107_3NP_A02_1_S9

value: M


title: DNs_R1_GAM190107_3NP_A03_1_S17


title: DNs_R1_GAM190107_0NP_H12_1_S96


title: OLGs_GAM181213_3NP_H10_1_S80


title: OLGs_GAM181213_3NP_H11_1_S88


title: OLGs_GAM181213_3NP_H08_1_S64


title: DNs_R1_GAM190107_3NP_B02_1_S10


title: DNs_R1_GAM190107_3NP_B05_1_S34


title: OLGs_GAM181213_3NP_H07_1_S56


title: OLGs_GAM181213_3NP_H06_2_S144


title: OLGs_GAM181213_3NP_H06_1_S48


title: DNs_R1_GAM190107_3NP_A07_1_S49


title: OLGs_GAM181213_3NP_H09_1_S72


title: OLGs_GAM181213_3NP_H04_2_S128


title: OLGs_GAM181213_3NP_H05_1_S40


title: OLGs_GAM181213_3NP_H02_1_S16


title: OLGs_GAM181213_3NP_H03_1_S24


title: OLGs_GAM181213_3NP_G10_1_S79


title: OLGs_GAM181213_3NP_G11_1_S87


title: OLGs_GAM181213_3NP_H01_1_S8


title: OLGs_GAM181213_3NP_H01_2_S104


title: OLGs_GAM181213_3NP_G07_1_S55


title: OLGs_GAM181213_3NP_G12_1_S95


title: OLGs_GAM181213_3NP_G09_1_S71


title: OLGs_GAM181213_3NP_G06_2_S143


title: OLGs_GAM181213_3NP_G08_1_S63


title: OLGs_GAM181213_3NP_G06_1_S47


title: OLGs_GAM181213_3NP_G05_1_S39


title: OLGs_GAM181213_3NP_G05_2_S135


title: OLGs_GAM181213_3NP_G04_1_S31


title: OLGs_GAM181213_3NP_G04_2_S127


title: OLGs_GAM181213_3NP_G03_2_S119


title: OLGs_GAM181213_3NP_G02_2_S111


title: OLGs_GAM181213_3NP_G03_1_S23


title: OLGs_GAM181213_3NP_H05_2_S136


title: OLGs_GAM181213_3NP_G01_2_S103


title: OLGs_GAM181213_3NP_G01_1_S7


title: OLGs_GAM181213_3NP_H03_2_S120


title: OLGs_GAM181213_3NP_G02_1_S15


title: OLGs_GAM181213_3NP_F11_1_S86


title: OLGs_GAM181213_3NP_F12_1_S94


title: OLGs_GAM181213_3NP_F10_1_S78


title: DNs_R1_GAM190107_3NP_E05_1_S37


title: OLGs_GAM181213_3NP_F06_1_S46


title: OLGs_GAM181213_3NP_F07_1_S54


title: OLGs_GAM181213_3NP_F06_2_S142


title: OLGs_GAM181213_3NP_F05_2_S134


title: OLGs_GAM181213_3NP_F09_1_S70


title: OLGs_GAM181213_3NP_F03_1_S22


title: OLGs_GAM181213_3NP_F08_1_S62


title: OLGs_GAM181213_3NP_F05_1_S38


title: DNs_R1_GAM190114_3NP_A08_1_S57


title: OLGs_GAM181213_3NP_F04_2_S126


title: OLGs_GAM181213_3NP_F01_1_S6


title: OLGs_GAM181213_3NP_F03_2_S118


title: OLGs_GAM181213_3NP_H04_1_S32


title: OLGs_GAM181213_3NP_F02_1_S14


title: OLGs_GAM181213_3NP_F01_2_S102


title: OLGs_GAM181213_3NP_E11_1_S85


title: OLGs_GAM181213_3NP_E12_1_S93


title: OLGs_GAM181213_3NP_E10_1_S77


title: OLGs_GAM181213_3NP_E08_1_S61


title: OLGs_GAM181213_3NP_E09_1_S69


title: OLGs_GAM181213_3NP_E05_2_S133


title: OLGs_GAM181213_3NP_E06_1_S45


title: OLGs_GAM181213_3NP_E07_1_S53


title: OLGs_GAM181213_3NP_E04_2_S125


title: OLGs_GAM181213_3NP_F02_2_S110


title: OLGs_GAM181213_3NP_E03_1_S21


title: OLGs_GAM181213_3NP_E06_2_S141


title: OLGs_GAM181213_3NP_E02_1_S13


title: OLGs_GAM181213_3NP_E04_1_S29


title: OLGs_GAM181213_3NP_D11_1_S84


title: OLGs_GAM181213_3NP_E01_2_S101


title: OLGs_GAM181213_3NP_D09_1_S68


title: OLGs_GAM181213_3NP_E05_1_S37


title: OLGs_GAM181213_3NP_E02_2_S109


title: OLGs_GAM181213_3NP_D12_1_S92


title: OLGs_GAM181213_3NP_E01_1_S5


title: OLGs_GAM181213_3NP_D10_1_S76


title: OLGs_GAM181213_3NP_D07_1_S52


title: OLGs_GAM181213_3NP_D06_2_S140


title: OLGs_GAM181213_3NP_D08_1_S60


title: OLGs_GAM181213_3NP_E03_2_S117


title: OLGs_GAM181213_3NP_D04_2_S124


title: OLGs_GAM181213_3NP_D06_1_S44


title: OLGs_GAM181213_3NP_D04_1_S28


title: OLGs_GAM181213_3NP_D05_1_S36


title: OLGs_GAM181213_3NP_D03_2_S116


title: OLGs_GAM181213_3NP_D02_2_S108


title: OLGs_GAM181213_3NP_D02_1_S12


title: OLGs_GAM181213_3NP_D01_2_S100


title: OLGs_GAM181213_3NP_D03_1_S20


title: OLGs_GAM181213_3NP_D01_1_S4


title: OLGs_GAM181213_3NP_C12_1_S91


title: OLGs_GAM181213_3NP_C10_1_S75


title: OLGs_GAM181213_3NP_C08_1_S59


title: OLGs_GAM181213_3NP_C09_1_S67


title: OLGs_GAM181213_3NP_C11_1_S83


title: OLGs_GAM181213_3NP_F04_1_S30


title: OLGs_GAM181213_3NP_C07_1_S51


title: OLGs_GAM181213_3NP_C04_2_S123


title: OLGs_GAM181213_3NP_C05_2_S131


title: OLGs_GAM181213_3NP_D05_2_S132


title: OLGs_GAM181213_3NP_C03_2_S115


title: OLGs_GAM181213_3NP_C04_1_S27


title: OLGs_GAM181213_3NP_C06_1_S43


title: OLGs_GAM181213_3NP_C03_1_S19


title: OLGs_GAM181213_3NP_C05_1_S35


title: OLGs_GAM181213_3NP_C02_2_S107


title: OLGs_GAM181213_3NP_C02_1_S11


title: OLGs_GAM181213_3NP_C01_2_S99


title: OLGs_GAM181213_3NP_C01_1_S3


title: OLGs_GAM181213_3NP_B12_1_S90


title: OLGs_GAM181213_3NP_B11_1_S82


title: OLGs_GAM181213_3NP_B10_1_S74


title: OLGs_GAM181213_3NP_B08_1_S58


title: OLGs_GAM181213_3NP_B07_1_S50


title: OLGs_GAM181213_3NP_B06_2_S138


title: OLGs_GAM181213_3NP_C06_2_S139


title: OLGs_GAM181213_3NP_B05_2_S130


title: OLGs_GAM181213_3NP_B06_1_S42


title: OLGs_GAM181213_3NP_B05_1_S34


title: OLGs_GAM181213_3NP_B04_2_S122


title: OLGs_GAM181213_3NP_B04_1_S26


title: OLGs_GAM181213_3NP_B03_2_S114


title: OLGs_GAM181213_3NP_B03_1_S18


title: OLGs_GAM181213_3NP_B02_2_S106


title: OLGs_GAM181213_3NP_B01_2_S98


title: OLGs_GAM181213_3NP_B02_1_S10


title: OLGs_GAM181213_3NP_A08_1_S57


title: OLGs_GAM181213_3NP_A11_1_S81


title: OLGs_GAM181213_3NP_A06_1_S41


title: OLGs_GAM181213_3NP_B09_1_S66


title: OLGs_GAM181213_3NP_A12_1_S89


title: OLGs_GAM181213_3NP_A06_2_S137


title: DNs_R1_GAM190107_3NP_G11_1_S87


title: OLGs_GAM181213_3NP_A07_1_S49


title: OLGs_GAM181213_3NP_A05_2_S129


title: OLGs_GAM181213_3NP_A05_1_S33


title: OLGs_GAM181213_3NP_A04_1_S25


title: OLGs_GAM181213_3NP_A03_2_S113


title: OLGs_GAM181213_3NP_A03_1_S17


title: OLGs_GAM181213_3NP_A02_2_S105


title: OLGs_GAM181213_3NP_A01_2_S97


title: OLGs_GAM181213_3NP_A01_1_S1


title: OLGs_GAM181213_3NP_B01_1_S2


title: OLGs_GAM180713_3NP_H12_1_S96


title: OLGs_GAM181213_3NP_A09_1_S65


title: OLGs_GAM180713_3NP_H11_2_S184


title: OLGs_GAM181213_3NP_A10_1_S73


title: OLGs_GAM180713_3NP_H11_1_S88


title: DNs_R1_GAM190114_3NP_C12_1_S91


title: OLGs_GAM180713_3NP_H10_2_S176


title: OLGs_GAM180713_3NP_H10_1_S80


title: OLGs_GAM180713_3NP_H08_1_S64


title: OLGs_GAM180713_3NP_H08_2_S160


title: OLGs_GAM180713_3NP_H09_1_S72


title: OLGs_GAM181213_3NP_A04_2_S121


title: OLGs_GAM180713_3NP_H07_2_S152


title: OLGs_GAM180713_3NP_H05_2_S136


title: OLGs_GAM180713_3NP_H07_1_S56


title: OLGs_GAM180713_3NP_H06_2_S144


title: OLGs_GAM180713_3NP_H05_1_S40


title: OLGs_GAM181213_3NP_A02_1_S9


title: OLGs_GAM180713_3NP_H06_1_S48


title: OLGs_GAM180713_3NP_H04_1_S32


title: OLGs_GAM180713_3NP_H12_2_S192


title: OLGs_GAM180713_3NP_H02_2_S112


title: OLGs_GAM180713_3NP_H02_1_S16


title: OLGs_GAM180713_3NP_H09_2_S168


title: OLGs_GAM180713_3NP_H01_1_S8


title: OLGs_GAM180713_3NP_G11_2_S183


title: OLGs_GAM180713_3NP_G11_1_S87


title: OLGs_GAM180713_3NP_G12_1_S95


title: OLGs_GAM180713_3NP_G10_2_S175


title: OLGs_GAM180713_3NP_H01_2_S104


title: OLGs_GAM180713_3NP_G12_2_S191


title: OLGs_GAM180713_3NP_G09_1_S71


title: OLGs_GAM180713_3NP_G07_2_S151


title: OLGs_GAM180713_3NP_G07_1_S55


title: OLGs_GAM180713_3NP_G08_1_S63


title: OLGs_GAM180713_3NP_G06_2_S143


title: OLGs_GAM180713_3NP_H04_2_S128


title: OLGs_GAM180713_3NP_G06_1_S47


title: OLGs_GAM180713_3NP_G09_2_S167


title: OLGs_GAM180713_3NP_G04_2_S127


title: OLGs_GAM180713_3NP_H03_2_S120


title: OLGs_GAM180713_3NP_G05_1_S39


title: OLGs_GAM180713_3NP_H03_1_S24


title: OLGs_GAM180713_3NP_G05_2_S135


title: OLGs_GAM180713_3NP_G03_2_S119


title: OLGs_GAM180713_3NP_G04_1_S31


title: OLGs_GAM180713_3NP_G03_1_S23


title: OLGs_GAM180713_3NP_G02_2_S111


title: OLGs_GAM180713_3NP_G02_1_S15


title: OLGs_GAM180713_3NP_G01_2_S103


title: OLGs_GAM180713_3NP_G10_1_S79


title: OLGs_GAM180713_3NP_G01_1_S7


title: OLGs_GAM180713_3NP_F12_2_S190


title: OLGs_GAM180713_3NP_F11_2_S182


title: OLGs_GAM180713_3NP_G08_2_S159


title: OLGs_GAM180713_3NP_F10_2_S174


title: OLGs_GAM180713_3NP_F11_1_S86


title: OLGs_GAM180713_3NP_F10_1_S78


title: OLGs_GAM180713_3NP_F09_1_S70


title: OLGs_GAM180713_3NP_F08_1_S62


title: OLGs_GAM180713_3NP_F06_1_S46


title: OLGs_GAM180713_3NP_F06_2_S142


title: OLGs_GAM180713_3NP_F07_1_S54


title: OLGs_GAM180713_3NP_F05_2_S134


title: OLGs_GAM180713_3NP_F03_1_S22


title: OLGs_GAM180713_3NP_F08_2_S158


title: OLGs_GAM180713_3NP_F05_1_S38


title: OLGs_GAM180713_3NP_F02_2_S110


title: OLGs_GAM180713_3NP_F04_1_S30


title: OLGs_GAM180713_3NP_F03_2_S118


title: OLGs_GAM180713_3NP_F01_2_S102


title: OLGs_GAM180713_3NP_F02_1_S14


title: OLGs_GAM180713_3NP_E12_2_S189


title: OLGs_GAM180713_3NP_F01_1_S6


title: OLGs_GAM180713_3NP_E11_2_S181


title: OLGs_GAM180713_3NP_F12_1_S94


title: OLGs_GAM180713_3NP_F04_2_S126


title: OLGs_GAM180713_3NP_E10_2_S173


title: OLGs_GAM180713_3NP_E11_1_S85


title: OLGs_GAM180713_3NP_E12_1_S93


title: OLGs_GAM180713_3NP_F09_2_S166


title: OLGs_GAM180713_3NP_F07_2_S150


title: OLGs_GAM180713_3NP_E08_2_S157


title: OLGs_GAM180713_3NP_E10_1_S77


title: OLGs_GAM180713_3NP_E08_1_S61


title: OLGs_GAM180713_3NP_E09_2_S165


title: OLGs_GAM180713_3NP_E09_1_S69


title: OLGs_GAM180713_3NP_E07_2_S149


title: OLGs_GAM180713_3NP_E07_1_S53


title: OLGs_GAM180713_3NP_E06_1_S45


title: OLGs_GAM180713_3NP_E02_2_S109


title: OLGs_GAM180713_3NP_E05_1_S37


title: OLGs_GAM180713_3NP_E01_2_S101


title: OLGs_GAM180713_3NP_E04_2_S125


title: OLGs_GAM180713_3NP_E05_2_S133


title: OLGs_GAM180713_3NP_E02_1_S13


title: OLGs_GAM180713_3NP_D10_2_S172


title: OLGs_GAM180713_3NP_E04_1_S29


title: OLGs_GAM180713_3NP_E01_1_S5


title: OLGs_GAM180713_3NP_E06_2_S141


title: OLGs_GAM180713_3NP_D12_1_S92


title: OLGs_GAM180713_3NP_D09_2_S164


title: OLGs_GAM180713_3NP_D11_2_S180


title: OLGs_GAM180713_3NP_D11_1_S84


title: OLGs_GAM180713_3NP_D12_2_S188


title: OLGs_GAM180713_3NP_D10_1_S76


title: OLGs_GAM180713_3NP_D07_2_S148


title: OLGs_GAM180713_3NP_D08_2_S156


title: OLGs_GAM180713_3NP_D08_1_S60


title: OLGs_GAM180713_3NP_D06_1_S44


title: OLGs_GAM180713_3NP_D05_2_S132


title: OLGs_GAM180713_3NP_D07_1_S52


title: OLGs_GAM180713_3NP_D06_2_S140


title: OLGs_GAM180713_3NP_E03_2_S117


title: OLGs_GAM180713_3NP_E03_1_S21


title: OLGs_GAM180713_3NP_D05_1_S36


title: OLGs_GAM180713_3NP_D03_2_S116


title: OLGs_GAM180713_3NP_D04_1_S28


title: OLGs_GAM180713_3NP_D03_1_S20


title: OLGs_GAM180713_3NP_D02_1_S12


title: OLGs_GAM180713_3NP_D04_2_S124


title: OLGs_GAM180713_3NP_D02_2_S108


title: OLGs_GAM180713_3NP_C11_1_S83


title: OLGs_GAM180713_3NP_D01_2_S100


title: OLGs_GAM180713_3NP_C12_2_S187


title: OLGs_GAM180713_3NP_C10_2_S171


title: OLGs_GAM180713_3NP_D01_1_S4


title: OLGs_GAM180713_3NP_C11_2_S179


title: OLGs_GAM180713_3NP_D09_1_S68


title: OLGs_GAM180713_3NP_C09_1_S67


title: OLGs_GAM180713_3NP_C09_2_S163


title: OLGs_GAM180713_3NP_C08_2_S155


title: OLGs_GAM180713_3NP_C08_1_S59


title: OLGs_GAM180713_3NP_C10_1_S75


title: OLGs_GAM180713_3NP_C07_2_S147


title: OLGs_GAM180713_3NP_C06_2_S139


title: OLGs_GAM180713_3NP_C06_1_S43


title: OLGs_GAM180713_3NP_C07_1_S51


title: OLGs_GAM180713_3NP_C05_1_S35


title: OLGs_GAM180713_3NP_C04_1_S27


title: OLGs_GAM180713_3NP_C03_2_S115


title: OLGs_GAM180713_3NP_C12_1_S91


title: OLGs_GAM180713_3NP_C03_1_S19


title: OLGs_GAM180713_3NP_C02_2_S107


title: OLGs_GAM180713_3NP_C02_1_S11


title: OLGs_GAM180713_3NP_B12_2_S186


title: OLGs_GAM180713_3NP_B12_1_S90


title: OLGs_GAM181213_3NP_H02_2_S112


title: OLGs_GAM180713_3NP_B11_2_S178


title: OLGs_GAM180713_3NP_B10_2_S170


title: OLGs_GAM180713_3NP_B11_1_S82


title: OLGs_GAM180713_3NP_B09_1_S66


title: OLGs_GAM180713_3NP_B09_2_S162


title: OLGs_GAM180713_3NP_B08_2_S154


title: OLGs_GAM180713_3NP_B10_1_S74


title: OLGs_GAM180713_3NP_B07_2_S146


title: OLGs_GAM180713_3NP_B07_1_S50


title: OLGs_GAM180713_3NP_B08_1_S58


title: OLGs_GAM180713_3NP_C04_2_S123


title: OLGs_GAM180713_3NP_B06_1_S42


title: OLGs_GAM180713_3NP_B06_2_S138


title: OLGs_GAM180713_3NP_C05_2_S131


title: OLGs_GAM180713_3NP_B05_1_S34


title: OLGs_GAM180713_3NP_B04_2_S122


title: OLGs_GAM180713_3NP_B05_2_S130


title: OLGs_GAM180713_3NP_B04_1_S26


title: OLGs_GAM180713_3NP_B03_2_S114


title: OLGs_GAM180713_3NP_C01_2_S99


title: OLGs_GAM180713_3NP_B03_1_S18


title: OLGs_GAM180713_3NP_B02_2_S106


title: OLGs_GAM180713_3NP_B02_1_S10


title: OLGs_GAM180713_3NP_C01_1_S3


title: OLGs_GAM180713_3NP_B01_2_S98


title: OLGs_GAM180713_3NP_A12_2_S185


title: OLGs_GAM180713_3NP_A12_1_S89


title: OLGs_GAM180713_3NP_A11_1_S81


title: OLGs_GAM180713_3NP_A11_2_S177


title: OLGs_GAM180713_3NP_A09_2_S161


title: OLGs_GAM180713_3NP_A10_1_S73


title: OLGs_GAM180713_3NP_A08_2_S153


title: OLGs_GAM180713_3NP_A09_1_S65


title: OLGs_GAM180713_3NP_A08_1_S57


title: OLGs_GAM180713_3NP_A07_1_S49


title: OLGs_GAM180713_3NP_A07_2_S145


title: OLGs_GAM180713_3NP_A06_2_S137


title: OLGs_GAM180713_3NP_A05_1_S33


title: OLGs_GAM180713_3NP_A06_1_S41


title: OLGs_GAM180713_3NP_A04_2_S121


title: OLGs_GAM180713_3NP_A03_2_S113


title: OLGs_GAM180713_3NP_A05_2_S129


title: OLGs_GAM180713_3NP_A04_1_S25


title: OLGs_GAM180713_3NP_A03_1_S17


title: OLGs_GAM180713_3NP_A02_1_S9


title: OLGs_GAM180713_3NP_A01_2_S97


title: OLGs_GAM180713_3NP_A02_2_S105


title: PGNs_R2_GAM190104_3NP_H12_1_S96

description:
processed data: PGNs.R2.segregation_at50000.2019-12-05.passed_qc.table
processed data: PGNs.R2.mm10.NPMI.at50Kb.all_chromosomes.gz
processed data: PGNs.R2.mm10.coseg.at250Kb.all_chromosomes.gz

source_name: pyramidal glutamatergic neurons

value: cornus ammonis 1 region of the hippocampus

value: pyramidal glutamatergic neurons

value: Pan-histo


title: OLGs_GAM180713_3NP_A01_1_S1

value: passed

value: No


title: PGNs_R2_GAM190104_3NP_H12_2_S192


title: OLGs_GAM180713_3NP_B01_1_S2


title: PGNs_R2_GAM190104_3NP_H11_2_S184


title: PGNs_R2_GAM190104_3NP_H11_1_S88


title: PGNs_R2_GAM190104_3NP_H10_2_S176


title: PGNs_R2_GAM190104_3NP_H10_1_S80


title: OLGs_GAM180713_3NP_A10_2_S169


title: PGNs_R2_GAM190104_3NP_H09_1_S72


title: PGNs_R2_GAM190104_3NP_H09_2_S168


title: PGNs_R2_GAM190104_3NP_H08_1_S64


title: PGNs_R2_GAM190104_3NP_H07_2_S152


title: PGNs_R2_GAM190104_3NP_H07_1_S56


title: PGNs_R2_GAM190104_3NP_H06_2_S144


title: PGNs_R2_GAM190104_3NP_H06_1_S48


title: PGNs_R2_GAM190104_3NP_H05_1_S40


title: PGNs_R2_GAM190104_3NP_H04_1_S32


title: PGNs_R2_GAM190104_3NP_H05_2_S136


title: PGNs_R2_GAM190104_3NP_H03_1_S24


title: PGNs_R2_GAM190104_3NP_H02_1_S16


title: PGNs_R2_GAM190104_3NP_H04_2_S128


title: PGNs_R2_GAM190104_3NP_H02_2_S112


title: PGNs_R2_GAM190104_3NP_G12_2_S191


title: PGNs_R2_GAM190104_3NP_G12_1_S95


title: PGNs_R2_GAM190104_3NP_H01_2_S104


title: PGNs_R2_GAM190104_3NP_G11_2_S183


title: PGNs_R2_GAM190104_3NP_H03_2_S120


title: PGNs_R2_GAM190104_3NP_G10_1_S79


title: PGNs_R2_GAM190104_3NP_G09_2_S167


title: PGNs_R2_GAM190104_3NP_H01_1_S8


title: PGNs_R2_GAM190104_3NP_G08_1_S63


title: PGNs_R2_GAM190104_3NP_G09_1_S71


title: PGNs_R2_GAM190104_3NP_G11_1_S87


title: PGNs_R2_GAM190104_3NP_G10_2_S175


title: PGNs_R2_GAM190104_3NP_G08_2_S159


title: PGNs_R2_GAM190104_3NP_H08_2_S160


title: PGNs_R2_GAM190104_3NP_G06_2_S143


title: PGNs_R2_GAM190104_3NP_G07_2_S151


title: PGNs_R2_GAM190104_3NP_G07_1_S55


title: PGNs_R2_GAM190104_3NP_G06_1_S47


title: PGNs_R2_GAM190104_3NP_G05_1_S39


title: PGNs_R2_GAM190104_3NP_G05_2_S135


title: PGNs_R2_GAM190104_3NP_G04_1_S31


title: PGNs_R2_GAM190104_3NP_G04_2_S127


title: PGNs_R2_GAM190104_3NP_G02_1_S15


title: PGNs_R2_GAM190104_3NP_G03_1_S23


title: PGNs_R2_GAM190104_3NP_G03_2_S119


title: PGNs_R2_GAM190104_3NP_G02_2_S111


title: PGNs_R2_GAM190104_3NP_G01_1_S7


title: PGNs_R2_GAM190104_3NP_G01_2_S103


title: PGNs_R2_GAM190104_3NP_F12_2_S190


title: PGNs_R2_GAM190104_3NP_F11_2_S182


title: PGNs_R2_GAM190104_3NP_F11_1_S86


title: PGNs_R2_GAM190104_3NP_F12_1_S94


title: PGNs_R2_GAM190104_3NP_F10_2_S174


title: PGNs_R2_GAM190104_3NP_F10_1_S78


title: PGNs_R2_GAM190104_3NP_F09_2_S166


title: PGNs_R2_GAM190104_3NP_F08_1_S62


title: PGNs_R2_GAM190104_3NP_F06_2_S142


title: PGNs_R2_GAM190104_3NP_F09_1_S70


title: PGNs_R2_GAM190104_3NP_F06_1_S46


title: PGNs_R2_GAM190104_3NP_F05_1_S38


title: PGNs_R2_GAM190104_3NP_F07_1_S54


title: PGNs_R2_GAM190104_3NP_F04_2_S126


title: PGNs_R2_GAM190104_3NP_F05_2_S134


title: PGNs_R2_GAM190104_3NP_F04_1_S30


title: PGNs_R2_GAM190104_3NP_F03_2_S118


title: PGNs_R2_GAM190104_3NP_F02_2_S110


title: PGNs_R2_GAM190104_3NP_F03_1_S22


title: PGNs_R2_GAM190104_3NP_F08_2_S158


title: PGNs_R2_GAM190104_3NP_F02_1_S14


title: PGNs_R2_GAM190104_3NP_F01_2_S102


title: PGNs_R2_GAM190104_3NP_F01_1_S6


title: PGNs_R2_GAM190104_3NP_E12_1_S93


title: PGNs_R2_GAM190104_3NP_E11_1_S85


title: PGNs_R2_GAM190104_3NP_E12_2_S189


title: PGNs_R2_GAM190104_3NP_E10_1_S77


title: PGNs_R2_GAM190104_3NP_E11_2_S181


title: PGNs_R2_GAM190104_3NP_E09_1_S69


title: PGNs_R2_GAM190104_3NP_E08_2_S157


title: PGNs_R2_GAM190104_3NP_E08_1_S61


title: PGNs_R2_GAM190104_3NP_F07_2_S150


title: PGNs_R2_GAM190104_3NP_E06_2_S141


title: PGNs_R2_GAM190104_3NP_E07_2_S149


title: PGNs_R2_GAM190104_3NP_E07_1_S53


title: PGNs_R2_GAM190104_3NP_E06_1_S45


title: PGNs_R2_GAM190104_3NP_E04_1_S29


title: PGNs_R2_GAM190104_3NP_E05_1_S37


title: PGNs_R2_GAM190104_3NP_E05_2_S133


title: PGNs_R2_GAM190104_3NP_E03_2_S117


title: PGNs_R2_GAM190104_3NP_E02_2_S109


title: PGNs_R2_GAM190104_3NP_E03_1_S21


title: PGNs_R2_GAM190104_3NP_E04_2_S125


title: PGNs_R2_GAM190104_3NP_E02_1_S13


title: PGNs_R2_GAM190104_3NP_E01_1_S5


title: PGNs_R2_GAM190104_3NP_E01_2_S101


title: PGNs_R2_GAM190104_3NP_D12_1_S92


title: PGNs_R2_GAM190104_3NP_D10_2_S172


title: PGNs_R2_GAM190104_3NP_D12_2_S188


title: PGNs_R2_GAM190104_3NP_D09_2_S164


title: PGNs_R2_GAM190104_3NP_D11_1_S84


title: PGNs_R2_GAM190104_3NP_D08_1_S60


title: PGNs_R2_GAM190104_3NP_D10_1_S76


title: PGNs_R2_GAM190104_3NP_D09_1_S68


title: PGNs_R2_GAM190104_3NP_E09_2_S165


title: PGNs_R2_GAM190104_3NP_D07_2_S148


title: PGNs_R2_GAM190104_3NP_D06_2_S140


title: PGNs_R2_GAM190104_3NP_D05_2_S132


title: PGNs_R2_GAM190104_3NP_D05_1_S36


title: PGNs_R2_GAM190104_3NP_D06_1_S44


title: PGNs_R2_GAM190104_3NP_D04_1_S28


title: PGNs_R2_GAM190104_3NP_D03_2_S116


title: PGNs_R2_GAM190104_3NP_D02_2_S108


title: PGNs_R2_GAM190104_3NP_D02_1_S12


title: PGNs_R2_GAM190104_3NP_D11_2_S180


title: PGNs_R2_GAM190104_3NP_D03_1_S20


title: PGNs_R2_GAM190104_3NP_D01_2_S100


title: PGNs_R2_GAM190104_3NP_D01_1_S4


title: PGNs_R2_GAM190104_3NP_C12_1_S91


title: PGNs_R2_GAM190104_3NP_C12_2_S187


title: PGNs_R2_GAM190104_3NP_C11_2_S179


title: PGNs_R2_GAM190104_3NP_C11_1_S83


title: PGNs_R2_GAM190104_3NP_C10_2_S171


title: PGNs_R2_GAM190104_3NP_D08_2_S156


title: PGNs_R2_GAM190104_3NP_D07_1_S52


title: PGNs_R2_GAM190104_3NP_C08_1_S59


title: PGNs_R2_GAM190104_3NP_C10_1_S75


title: PGNs_R2_GAM190104_3NP_C07_1_S51


title: PGNs_R2_GAM190104_3NP_C06_1_S43


title: PGNs_R2_GAM190104_3NP_C06_2_S139


title: PGNs_R2_GAM190104_3NP_C05_2_S131


title: PGNs_R2_GAM190104_3NP_D04_2_S124


title: PGNs_R2_GAM190104_3NP_C05_1_S35


title: PGNs_R2_GAM190104_3NP_C04_2_S123


title: PGNs_R2_GAM190104_3NP_C04_1_S27


title: PGNs_R2_GAM190104_3NP_C03_2_S115


title: PGNs_R2_GAM190104_3NP_C02_2_S107


title: PGNs_R2_GAM190104_3NP_C01_1_S3


title: PGNs_R2_GAM190104_3NP_C02_1_S11


title: PGNs_R2_GAM190104_3NP_B12_2_S186


title: PGNs_R2_GAM190104_3NP_C03_1_S19


title: PGNs_R2_GAM190104_3NP_C01_2_S99


title: PGNs_R2_GAM190104_3NP_C09_1_S67


title: PGNs_R2_GAM190104_3NP_C09_2_S163


title: PGNs_R2_GAM190104_3NP_B11_1_S82


title: PGNs_R2_GAM190104_3NP_B09_2_S162


title: PGNs_R2_GAM190104_3NP_C07_2_S147


title: PGNs_R2_GAM190104_3NP_B08_1_S58


title: PGNs_R2_GAM190104_3NP_B10_1_S74


title: PGNs_R2_GAM190104_3NP_B08_2_S154


title: PGNs_R2_GAM190104_3NP_B09_1_S66


title: PGNs_R2_GAM190104_3NP_C08_2_S155


title: PGNs_R2_GAM190104_3NP_B06_1_S42


title: PGNs_R2_GAM190104_3NP_B05_2_S130


title: PGNs_R2_GAM190104_3NP_B04_2_S122


title: PGNs_R2_GAM190104_3NP_B06_2_S138


title: PGNs_R2_GAM190104_3NP_B04_1_S26


title: PGNs_R2_GAM190104_3NP_B05_1_S34


title: PGNs_R2_GAM190104_3NP_B12_1_S90


title: PGNs_R2_GAM190104_3NP_B11_2_S178


title: PGNs_R2_GAM190104_3NP_B02_1_S10


title: PGNs_R2_GAM190104_3NP_B01_2_S98


title: PGNs_R2_GAM190104_3NP_B10_2_S170


title: PGNs_R2_GAM190104_3NP_B03_2_S114


title: PGNs_R2_GAM190104_3NP_B02_2_S106


title: PGNs_R2_GAM190104_3NP_A11_2_S177


title: PGNs_R2_GAM190104_3NP_B01_1_S2


title: PGNs_R2_GAM190104_3NP_A11_1_S81


title: PGNs_R2_GAM190104_3NP_A10_1_S73


title: PGNs_R2_GAM190104_3NP_B07_2_S146


title: PGNs_R2_GAM190104_3NP_A10_2_S169


title: PGNs_R2_GAM190104_3NP_B07_1_S50


title: PGNs_R2_GAM190104_3NP_A08_2_S153


title: PGNs_R2_GAM190104_3NP_A09_2_S161


title: PGNs_R2_GAM190104_3NP_A08_1_S57


title: PGNs_R2_GAM190104_3NP_A07_2_S145


title: PGNs_R2_GAM190104_3NP_A09_1_S65


title: PGNs_R2_GAM190104_3NP_A07_1_S49


title: PGNs_R2_GAM190104_3NP_B03_1_S18


title: PGNs_R2_GAM190104_3NP_A05_2_S129


title: PGNs_R2_GAM190104_3NP_A04_1_S25


title: Inguinal fat WT mouse-2

city: Los Angeles

first: Kailtyn

middle: Yan-Yun

last: Liu

state: CA

address: 10833 Le Conte Ave

department: Medicine

institute: UCLA/VA

description:
WT_iWAT.txt
WT_iWAT_Regular_Diet_Num_2_S26_R1

data_processing:
Seqencing was perfrmed on Illumia Hiseq3000 for a single read 100 run. Data quality chec was one on Illumina SAV. Demultiplexing was performed with Illumina Bcal2fast12 v 2.17 program.
The reads were first mapped to the latest UCSC transcript set using Bowtie2 version 2.1.0 and the gene expression level was estimated using RSEM v1.2.15. TMM (trimmed mean of M-values) was used to normalize the gene expression.
Differentially expressed genes were identified using the edgeR program.
Reads was defined as Counts Per Million (CPM),
Genome_build: MM10
Supplementary_files_format_and_content: Tab-deliminated files include CPM value for each sample.

source_name: Inquinal fat

growth_protocol: Rgular chow diet

extract_protocol:
Qiagen RNeasy Plus kit for total RNA extraction
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: No treatment

value: Inquinal fat

value: 3 month old

value: wildtype

value: male


title: Ingunial fat, K283Q/K288R mouse-3

description:
TRamutant_iWAT.txt
TRa_iWAT_Regular_Diet_Num_3_S30_R1

value: TRa mutant


title: Inguinal fat WT mouse-3

description:
WT_iWAT.txt
WT_iWAT_Regular_Diet_Num_3_S27_R1


title: PGNs_R2_GAM190104_3NP_A03_2_S113


title: Ingunial fat, K283Q/K288R mouse-2

description:
TRamutant_iWAT.txt
TRa_iWAT_Regular_Diet_Num_2_S29_R1


title: Ingunial fat, K283Q/K288R mouse-1

description:
TRamutant_iWAT.txt
TRa_iWAT_Regular_Diet_Num_1_S28_R1


title: PGNs_R2_GAM190104_3NP_A03_1_S17


title: PGNs_R2_GAM190104_3NP_A02_2_S105


title: PGNs_R2_GAM190104_3NP_A02_1_S9


title: 8 week tumor-draining lymph node_TCR

city: New Haven

first: Kelli

middle: A

last: Connolly

state: CT

address: 300 Cedar St.

department: Immunobiology

institute: Yale University

data_processing:
Library strategy: TCR-seq
processed with CellRanger 3.1 using the mm10 mouse genome indices from 10x genomics
scprep package (github.com/krishnaswamylab/scprep)
Cells with library size below 1000 UMI/cell and rare genes (genes detected in fewer than 5 cells) were removed
The data was then normalized by library size to 1,000 counts per cell and square-root transformed.
Genome_build: mm9
Supplementary_files_format_and_content: pickle format containing raw gene counts for every gene and every sample

source_name: mediastinal lymph node

extract_protocol: RNA libraries were prepared for sequencing using standard Illumina protocols

value: KP-NINJA

value: GP33-specific CD8+ T cells

tag: viral infection

value: intratracheal infection with 2.5x107 PFU Ad5mSPC-Cre (day 0) followed by systemic doxycycline and tamoxifen treated on days 7-11

value: Early stage cancer

tag: time point

value: 8 weeks post infection

tag: library strategy

value: ssTCR-seq

value: lymph node


title: 8 week tumor_TCR

source_name: tumor-bearing lung

value: lung


title: PGNs_R2_GAM190104_3NP_A01_2_S97

value: cornus ammonis 1 region of the hippocampus

value: pyramidal glutamatergic neurons

value: M


title: 17 week tumor_TCR

description: VDJ TCR

data_processing:
processed with CellRanger 3.1 using the mm10 mouse genome indices from 10x genomics
scprep package (github.com/krishnaswamylab/scprep)
Cells with library size below 1000 UMI/cell and rare genes (genes detected in fewer than 5 cells) were removed
The data was then normalized by library size to 1,000 counts per cell and square-root transformed.
Genome_build: mm9
Supplementary_files_format_and_content: pickle format containing raw gene counts for every gene and every sample

value: Late stage cancer

value: 17 weeks post infection


title: PGNs_R2_GAM190104_0NP_A12_2_S185

value: water control

value: failed

value: No

value: Pan-histo


title: PGNs_R2_GAM190104_3NP_A01_1_S1

value: passed


title: LCMV Clone 13

description: total RNA

source_name: spleen

value: GP33-specific CD8+ T cells

value: infected intraperitoneally with 2x106 PFU/mouse of LCMV-Clone 13

value: chronic infection

value: 28 days post infection

value: ssRNA-seq

value: spleen


title: LCMV Armstrong

description: total RNA

value: infected intraperitoneally with 2x106 PFU/mouse of LCMV-Armstrong

value: resolved acute infection


title: PGNs_R2_GAM190104_0NP_A12_1_S89

value: cornus ammonis 1 region of the hippocampus

value: pyramidal glutamatergic neurons


title: PGNs_R2_GAM190104_3NP_A05_1_S33

value: M


title: 17 week tumor-draining lymph node_TCR

description: VDJ TCR

value: KP-NINJA

value: intratracheal infection with 2.5x107 PFU Ad5mSPC-Cre (day 0) followed by systemic doxycycline and tamoxifen treated on days 7-11

value: Late stage cancer

value: 17 weeks post infection

value: ssTCR-seq

value: lymph node


title: Inguinal fat WT mouse-1

description:
WT_iWAT.txt
WT_iWAT_Regular_Diet_Num_1_S25_R1

value: Inquinal fat

value: 3 month old

value: wildtype

value: male


title: PGNs_R2_GAM190104_0NP_A06_1_S41

value: water control

value: failed

value: No

value: Pan-histo


title: PGNs_R2_GAM190104_0NP_A06_2_S137

value: cornus ammonis 1 region of the hippocampus


title: PGNs_R2_GAM190104_3NP_A04_2_S121

value: pyramidal glutamatergic neurons

value: passed


title: 17 week tumor

description: total RNA

value: KP-NINJA

value: GP33-specific CD8+ T cells

value: ssRNA-seq

value: lung


title: 17 week tumor-draining lymph node

description: total RNA

value: intratracheal infection with 2.5x107 PFU Ad5mSPC-Cre (day 0) followed by systemic doxycycline and tamoxifen treated on days 7-11

value: Late stage cancer

value: 17 weeks post infection


title: 8 week tumor

description: total RNA

value: Early stage cancer

value: 8 weeks post infection


title: 8 week tumor-draining lymph node

description: total RNA

value: lymph node


title: PGNs_R2_GAM181115_3NP_H10_1_S80

value: M


title: PGNs_R2_GAM181115_3NP_H12_1_S96


title: PGNs_R2_GAM181115_3NP_H11_1_S88


title: Liver CLA+GW6471_1

city: Yangzhou

first: Demin

last: Cai

address: Daxue South Road 88

institute: Yangzhou University

data_processing:
The FASTQ-formatted sequence data were analyzed using a standard BWA-Bowtie-Cufflinks workflow. Sequence reads were mapped to mm9 assembly with BWA and Bowtie software. The Cufflinks package was used for transcript assembly, quantification of normalized gene and isoform expression, and analysis of differential expression.
Genome_build: mm9
Supplementary_files_format_and_content: FPKM

extract_protocol:
Livers were removed, flash frozen on dry ice, and RNA was harvested using Trizol reagent.
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: Mice were fed a normal chow diet for one week for acclimation and were then randomized into four groups (n = 6): the first group received a chow diet with linoleic acid supplementation (LA, 1.5% w/w) as control/Veh (vehicle injections were applied when appropriate), the second group received a diet with CLA (1.5% w/w), the third group received the LA diet with i.p. injection of the PPARα antagonist GW6471 (G5045, Sigma, 20 mg kg-1 body weight) daily, and the last group received the CLA dietary treatment (1.5% w/w) for 28 days with i.p. injection of GW6471.

value: Kunming

value: Liver


title: Liver GW6471_1


title: PGNs_R2_GAM181115_3NP_H09_1_S72

value: No

value: Pan-histo


title: PGNs_R2_GAM181115_3NP_H08_1_S64

value: cornus ammonis 1 region of the hippocampus

value: pyramidal glutamatergic neurons


title: WISP2 4T1 sample 3

city: Memphis

first: David

last: Finkelstein

state: TN

address: 332 N. Lauderdale St.

department: Computational Biology

institute: St Jude Children's Research Hospital

data_processing:
Basecalls performed using CASAVA version 1.7
Sequences derived from total RNA paired-end 100-bp sequences were mapped to the mouse mm9 genome with the STRONGARM pipeline, which uses BWA and STAR aligner.
Transcript-level data were counted with HTSEQ
Genome_build: mm9

source_name: 4T1 murine cell line

growth_protocol: The 4T1 (ATCC) murine breast cancer cell line was cultivated in RPMI, 10% FCS, 1% penicillin/streptomycin. The MDA-MB-231 human breast cancer cell line and the 293FT cell line (ATCC) were cultivated in DMEM, 10% FCS, 1% penicillin/streptomycin. Cells were negative for Mycoplasma and used at passage 2 to 15 after thawing.

extract_protocol:
RNA was isolated from total cell lysates with the RNeasy Plus Mini kit (Qiagen)
RNA was prepared for RNA-seq with the TruSeq stranded mRNA library preparation kit (Illumina)

treatment_protocol: Cell lines with stable overexpression of Wisp1DCT or of Myc-tagged Wisp1 were generated with the QuikChange Lightning Site-directed mutagenesis kit (Agilent Technologies) and synthetic primers. Packaging of the vector was obtained by co-transfecting 293FT cells with 2 µg transfer vector, 1 μg pCMV-dR8.9, and 1 μg VSVg expression vectors using TransIT-293 reagent (Mirus) in Opti-MEM I (Thermo Fisher). 48 h after transfection, 293FT cell–conditioned medium was collected, filtered through a 0.45-μm filter, and applied to tumor cells with 4 μg/mL polybrene (Sigma). The tumor cells were then selected with 5 μg/mL puromycin beginning 24 h after transduction.

value: WISP2 OE


title: WISP2 4T1 sample 2


title: PGNs_R2_GAM181115_3NP_H07_1_S56

value: passed


title: WISP2 4T1 sample 1


title: M3 [P524311_TN1_S1]

type: genomic

city: Shanghai

first: Wansheng

last: Chen

address: 415 Fengyang Road

department: Department of Pharmacy

institute: Changzheng Hospital, Second Military Medical University

hyb_protocol: bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium MethylationEPIC BeadChip using standard Illumina protocol

scan_protocol: Arrays were imaged using iScan System using standard recommended Illumina scanner setting

data_processing:
ChAMP v3.6 pipeline
matrix processed value definition: Average Beta
matrix signal intensities value definition: Unmethylated and methylated signal intensities

label: Cy5 and Cy3

source_name: colorectal tumor adjacent normal tissue

label_protocol: Cy5 and Cy3 Standard Illumina Protocol

extract_protocol: genomic DNA was extracted using QIAGEN AllPrep DNA/RNA/miRNA universal kit according to standard instructions

value: Male

tag: weight

tag: height

tag: bmi

value: colorectal tumor adjacent normal tissue


title: PGNs_R2_GAM181115_3NP_H04_1_S32

tag: tissue


title: PGNs_R2_GAM181115_3NP_H05_1_S40

tag: age


title: PGNs_R2_GAM190104_3NP_E10_2_S173

tag: strain


title: M1 [P736676_TN1_S1]

value: Female


title: PGNs_R2_GAM181115_3NP_H02_1_S16

tag: cell type


title: PGNs_R2_GAM181115_3NP_H03_1_S24

tag: genotype


title: PGNs_R2_GAM181115_3NP_H01_1_S8


title: M2 [P566333_TN1_S1]


title: L6 [P740219_TN1_S1]


title: L9 [P739757_TN1_S1]


title: L7 [P740118_TN1_S1]


title: PGNs_R2_GAM181115_3NP_G11_1_S87


title: PGNs_R2_GAM181115_3NP_G12_1_S95


title: L4 [P740752_TN1_S1]


title: PGNs_R2_GAM181115_3NP_G10_1_S79


title: L3 [P740799_TN1_S1]


title: L2 [P740815_TN1_S1]


title: Liver CLA_1

value: CLA


title: PGNs_R2_GAM181115_3NP_G09_1_S71


title: PGNs_R2_GAM181115_3NP_G08_1_S63


title: L14 [P738898_TN1_S1]


title: PGNs_R2_GAM181115_3NP_G07_1_S55


title: PGNs_R2_GAM181115_3NP_H06_1_S48


title: L13 [P739459_TN1_S1]


title: PGNs_R2_GAM181115_3NP_G05_1_S39


title: L11 [P739563_TN1_S1]


title: PGNs_R2_GAM181115_3NP_G04_1_S31


title: K8 [P742789_TN1_S1]


title: PGNs_R2_GAM181115_3NP_G03_1_S23


title: K9 [P742512_TN1_S1]


title: PGNs_R2_GAM181115_3NP_G02_1_S15


title: L10 [P739733_TN1_S1]


title: L1 [P740956_TN1_S1]


title: L5 [P740583_TN1_S1]


title: PGNs_R2_GAM181115_3NP_F12_1_S94


title: PGNs_R2_GAM181115_3NP_G01_1_S7


title: PGNs_R2_GAM181115_3NP_F11_1_S86


title: K7 [P742790_TN1_S1]


title: K6 [P742870_TN1_S1]


title: PGNs_R2_GAM181115_3NP_F10_1_S78

value: failed


title: PGNs_R2_GAM181115_3NP_F08_1_S62


title: K5 [P742949_TN1_S1]


title: K3 [P743205_TN1_S1]


title: K4 [P743082_TN1_S1]


title: PGNs_R2_GAM181115_3NP_F09_1_S70


title: L12 [P739545_TN1_S1]


title: K2 [P743245_TN1_S1]


title: K14 [P741044_TN1_S1-1]


title: PGNs_R2_GAM181115_3NP_F06_1_S46


title: PGNs_R2_GAM181115_3NP_F05_1_S38


title: PGNs_R2_GAM181115_3NP_G06_1_S47


title: K13 [P741193_TN1_S1]


title: PGNs_R2_GAM181115_3NP_F04_1_S30


title: K10 [P742385_TN1_S1]


title: PGNs_R2_GAM181115_3NP_F03_1_S22


title: PGNs_R2_GAM181115_3NP_F01_1_S6


title: PGNs_R2_GAM181115_3NP_E12_1_S93


title: PGNs_R2_GAM181115_3NP_F02_1_S14


title: K11 [P742175_TN1_S1]


title: PGNs_R2_GAM181115_3NP_E09_1_S69


title: J9 [P744862_TN1_S1]


title: K1 [P743831_TN1_S1]


title: PGNs_R2_GAM181115_3NP_E10_1_S77


title: PGNs_R2_GAM181115_3NP_E08_1_S61


title: PGNs_R2_GAM181115_3NP_F07_1_S54


title: J6 [P745650_TN1_S1]


title: J8 [P744865_TN1_S1]


title: J4 [P746004_TN1_S1]


title: PGNs_R2_GAM181115_3NP_E07_1_S53


title: J2 [P746706_TN1_S1]


title: J5 [P745661_TN1_S1]


title: J3 [P746709_TN1_S1]


title: PGNs_R2_GAM181115_3NP_E06_1_S45


title: PGNs_R2_GAM181115_3NP_E04_1_S29


title: PGNs_R2_GAM181115_3NP_E05_1_S37


title: J14 [P744152_TN1_S1]


title: PGNs_R2_GAM181115_3NP_E03_1_S21


title: J13 [P744292_TN1_S1]


title: PGNs_R2_GAM181115_3NP_E11_1_S85


title: PGNs_R2_GAM181115_3NP_E01_1_S5


title: J11 [P744497_TN1_S1]


title: J12 [P744448_TN1_S1]


title: J7 [P745269_TN1_S1]


title: PGNs_R2_GAM181115_3NP_D11_1_S84


title: PGNs_R2_GAM181115_3NP_D12_1_S92


title: J10 [P744730_TN1_S1]


title: J1 [P749105_TN1_S1]


title: I6 [P752804_TN1_S1]


title: PGNs_R2_GAM181115_3NP_D10_1_S76


title: PGNs_R2_GAM181115_3NP_D07_1_S52


title: PGNs_R2_GAM181115_3NP_D06_1_S44


title: PGNs_R2_GAM181115_3NP_D09_1_S68


title: K12 [P741985_TN1_S1]


title: PGNs_R2_GAM181115_3NP_D05_1_S36


title: I9 [P751321_TN1_S1]


title: I14 [P749108_TN1_S1]


title: I12 [P750330_TN1_S1]


title: PGNs_R2_GAM181115_3NP_D04_1_S28


title: I4 [P741697_TN1_S1]


title: I2 [P750885_TN1_S1]


title: I3 [P749446_TN1_S1]


title: PGNs_R2_GAM181115_3NP_D03_1_S20


title: PGNs_R2_GAM181115_3NP_D01_1_S4


title: PGNs_R2_GAM181115_3NP_D08_1_S60


title: PGNs_R2_GAM181115_3NP_E02_1_S13


title: I11 [P750531_TN1_S1]


title: I5 [P747221_TN1_S1]


title: I10 [P751132_TN1_S1]


title: PGNs_R2_GAM181115_3NP_C11_1_S83


title: I7 [P742792_TN1_S1]


title: PGNs_R2_GAM181115_3NP_C12_1_S91


title: PGNs_R2_GAM181115_3NP_C10_1_S75


title: I1 [P752974_TN1_S1]


title: PGNs_R2_GAM181115_3NP_C09_1_S67


title: PGNs_R2_GAM181115_3NP_C08_1_S59


title: PGNs_R2_GAM181115_3NP_C07_1_S51


title: PGNs_R2_GAM181115_3NP_C06_1_S43


title: PGNs_R2_GAM181115_3NP_C05_1_S35


title: Experimental Media - D63B

city: Bronx

first: Stephen

last: Redenti

address: Biology Dept. , 250 Bedford Park Blvd.

institute: Lehman College, CUNY

data_processing:
The pooled smalRNA library was sequenced on Illumina Miseq using v3 reagrents by Norgen biotek Corp
A small RNA expression profile was generated from the resulting FASTQ files using the exceRpt small RNA-seq pipeline
RNA sequencing was done using Ion PI Hi-Q OT2 200 Kit, with Ion PI Chip Kit v3
Basecalling in Proton runs used Torrent Suite with filtering for subthreshold reads and adapter sequence trimming
subopimal sequences were removed from FASTQ data by FASTX-Toolkit
Total transcriptome reads were aligned to human genome reference with Proton RNAseq Analysis Plugin tool v5.2.0.5
Genome_build: hg19(RNAseq)  hg38(smallRNAseq)
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

source_name: retinal organoid conditioned media

growth_protocol:
hiPSC-derived 3D retinal organoids were generated and maintained in culture as previously described [10].
human retinal progenitor cells were culutre expanded at 37C

extract_protocol:
Exosomal RNA was isolated from samples 1-3, 9-11 using the RNA Isolation Midi Kit (Cat# 60800)
Total RNA was isolated for RNA seq using a RNeasy Mini Kit (Cat# 74104, Qiagen) according to the supplier’s protocol.
Barcoded total transcriptome RNA libraries were prepared by Ion Total RNA-Seq kit v2 (cat#4475936, Ion Torrent, ThermoFisher Scientific) according to manufacturer’s protocols.

treatment_protocol: Retinal organoid EVs from D42 were added to 6-well plates (78ug/well) containing (1.2*105 hRPCs/well) and incubated at 37°C. A second EV concentration (78ug/well) was added to each well at 48hrs and the experiment continued to 96hrs.

value: Experimental Media - D63B


title: Experimental Tissue - D42B

source_name: retinal organoid

extract_protocol:
Total RNA was isolated for RNA seq using a RNeasy Mini Kit (Cat# 74104, Qiagen) according to the supplier’s protocol.
Barcoded total transcriptome RNA libraries were prepared by Ion Total RNA-Seq kit v2 (cat#4475936, Ion Torrent, ThermoFisher Scientific) according to manufacturer’s protocols.

value: Experimental Tissue - D42B


title: PGNs_R2_GAM181115_3NP_D02_1_S12


title: Experimental Tissue - D63B

extract_protocol:
Tissue RNA was isolated from samples 6-8, 15-16 using the RNA Purification Kit (Cat# 25700)
Total RNA was isolated for RNA seq using a RNeasy Mini Kit (Cat# 74104, Qiagen) according to the supplier’s protocol.
Barcoded total transcriptome RNA libraries were prepared by Ion Total RNA-Seq kit v2 (cat#4475936, Ion Torrent, ThermoFisher Scientific) according to manufacturer’s protocols.

value: Experimental Tissue - D63B


title: PGNs_R2_GAM181115_3NP_C04_1_S27

value: M


title: Experimental Media - D90B

value: Experimental Media - D90B


title: PGNs_R2_GAM181115_3NP_C03_1_S19


title: PGNs_R2_GAM181115_3NP_C02_1_S11


title: Experimental Media - D42B

extract_protocol:
Exosomal RNA was isolated from samples 4,5, 12,13 using the RNA Isolation Maxi Kit (Cat#60900)
Total RNA was isolated for RNA seq using a RNeasy Mini Kit (Cat# 74104, Qiagen) according to the supplier’s protocol.
Barcoded total transcriptome RNA libraries were prepared by Ion Total RNA-Seq kit v2 (cat#4475936, Ion Torrent, ThermoFisher Scientific) according to manufacturer’s protocols.

value: Experimental Media - D42B


title: Experimental Tissue - D63A

extract_protocol:
Small RNA Libraries were generated using a NEBNext® Multiplex Small RNA Library Prep Set for Illumina
Tissue RNA was isolated from samples 6-8, 15-16 using the RNA Purification Kit (Cat# 25700)
Total RNA was isolated for RNA seq using a RNeasy Mini Kit (Cat# 74104, Qiagen) according to the supplier’s protocol.
Barcoded total transcriptome RNA libraries were prepared by Ion Total RNA-Seq kit v2 (cat#4475936, Ion Torrent, ThermoFisher Scientific) according to manufacturer’s protocols.

value: Experimental Tissue - D63A


title: Experimental Tissue - D42A

value: Experimental Tissue - D42A


title: PGNs_R2_GAM181115_3NP_B12_1_S90

value: cornus ammonis 1 region of the hippocampus

value: No

value: Pan-histo


title: Experimental Tissue - D90A

value: Experimental Tissue - D90A


title: Experimental Tissue - D90B

value: Experimental Tissue - D90B


title: Experimental Media - D42A

extract_protocol:
Small RNA Libraries were generated using a NEBNext® Multiplex Small RNA Library Prep Set for Illumina
Exosomal RNA was isolated from samples 4,5, 12,13 using the RNA Isolation Maxi Kit (Cat#60900)
Total RNA was isolated for RNA seq using a RNeasy Mini Kit (Cat# 74104, Qiagen) according to the supplier’s protocol.
Barcoded total transcriptome RNA libraries were prepared by Ion Total RNA-Seq kit v2 (cat#4475936, Ion Torrent, ThermoFisher Scientific) according to manufacturer’s protocols.

value: Experimental Media - D42A


title: PGNs_R2_GAM181115_3NP_B11_1_S82

value: pyramidal glutamatergic neurons

value: passed


title: Experimental Media - D63A

extract_protocol:
Small RNA Libraries were generated using a NEBNext® Multiplex Small RNA Library Prep Set for Illumina
Exosomal RNA was isolated from samples 1-3, 9-11 using the RNA Isolation Midi Kit (Cat# 60800)
Total RNA was isolated for RNA seq using a RNeasy Mini Kit (Cat# 74104, Qiagen) according to the supplier’s protocol.
Barcoded total transcriptome RNA libraries were prepared by Ion Total RNA-Seq kit v2 (cat#4475936, Ion Torrent, ThermoFisher Scientific) according to manufacturer’s protocols.

value: Experimental Media - D63A


title: PGNs_R2_GAM181115_3NP_B10_1_S74


title: PGNs_R2_GAM181115_3NP_B09_1_S66


title: PGNs_R2_GAM181115_3NP_B08_1_S58

value: failed


title: cmt3_gp3_IPARE_rep2

city: Ann Arbor

first: Andrzej

middle: T.

last: Wierzbicki

state: MI

address: 1105 N. University Ave.

department: Department of Molecular, Cellular and Developmental Biology

institute: University of Michigan

data_processing:
library strategy: RIP-seq with modified NanoPARE : IPARE
UMI was extracted from the read 2 and attached to the read name of read 1 using umi_tools
The reads were then trimmed for the 3' adapters and poly(A) sequences using cutadapt with a maximum error-rate allowance of 0.05 and a minimum length allowance of 20bps
The trimmed reads were then mapped to the TAIR10 genome using bowtie2 allowing one mismatch.
The mapped reads were then converted to bam format, sorted and indexed before removing the PCR duplicates using the UMI information in the read names using the umi_tools_dedup command from UMI-tools.
Genome_build: TAIR10
Supplementary_files_format_and_content: 100bp_50bp_sliding_windows_allDatasets_coverages.bed : tab delimited bed file with the read coverages of all datasets in each 100bp-50bp sliding window

organism: Arabidopsis thaliana

source_name: cmt3_gp3_IPARE_18 day-old seedlings

growth_protocol: Arabidopsis thaliana plants were grown in at 22ºC under white fluorescent light in 16h/8h day/dark cycle.

extract_protocol:
RNA-immunoprecipitation was performed as described in Rowley et al., 2013 (PMID:23707621) using NF-pellet paint instead of Glycoblue. Experiments were performed with protein A agarose beads coated with salmon sperm DNA (for anti-NRPE1)
Library was prepared by a modified version of NanoPARE protocol (PMID: 30355603). RNA was polyadenylated with Poly(A) polymerase. The polyadenylated RNA was EtOH-precepitated. The deadenylated RNA was DNase treated with TURBO DNase. The RNA was EtOH precepitated. The RT, template switching, pre-amplification and 2nd PCR were performed as NanoPARE.
RIP-seq with modified NanoPARE : IPARE

tag: ecotype

value: Columbia

tag: development stage/tissue

value: 18 day-old seedlings

tag: antibody

value: anti-NRPE1 antibody


title: drm2_gp3_IPARE_rep2

source_name: drm2_gp3_IPARE_18 day-old seedlings


title: PGNs_R2_GAM181115_3NP_B07_1_S50

tag: Sex

value: M

tag: treatment


title: met13_gp2_IPARE_rep1

source_name: met13_gp2_IPARE_18 day-old seedlings


title: Experimental Media - D90A

value: Experimental Media - D90A


title: drm2_gp2_IPARE_rep1

source_name: drm2_gp2_IPARE_18 day-old seedlings


title: PGNs_R2_GAM181115_3NP_B06_1_S42

tag: cross contamination

tag: if staining


title: PGNs_R2_GAM181115_3NP_B05_1_S34


title: PGNs_R2_GAM181115_3NP_B04_1_S26


title: PGNs_R2_GAM181115_3NP_B02_1_S10


title: Biological replicate of whisker follicle in MA-self-administered rat 5

city: Daegu

first: Taekwon

last: Son

address: 61, Cheomdan-ro, Dong-gu

department: Korea Brain Bank

country: South Korea

institute: Korea Brain Research Institute

description:
FPKM-all_genes.txt
V-M-5

data_processing:
Illumina RTA and bcl2fastq software used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to rn6 whole genome using STAR v2.6.0c.
Raw counts were calculated using Cufflinks v2.2.1.
FPKM was calculated using Cufflinks v2.2.1.
Genome_build: rn6
Supplementary_files_format_and_content: Tab-delimited text file include FPKM for all samples

organism: Rattus norvegicus

source_name: whisker follicle

extract_protocol:
Total RNA was extracted from striatum and whisker follicles using TRIzol® RNA Isolation Reagents (Thermo Fisher, Carlsbad, CA).  The quality and concentration of RNA were assessed on a filter-based multi-mode microplate reader (FLUOstar Omega, BMG Labtech, Germany). The isolated total RNA was processed for preparation of an mRNA sequencing library using TruSeq RNA Sample Preparation Kit v2 (Illumina, San Diego, CA, USA) according to the manufacturer’s instructions.  In brief, mRNAs were isolated from 1 μg of total RNA on RNA purification beads by polyA capture, followed by enzymatic shearing.
RNA libraries were prepared for sequencing using standard Illumina protocols.

value: SpragueDawley rats

value: methamphetamine

value: whisker follicle


title: PGNs_R2_GAM181115_3NP_B03_1_S18

value: cornus ammonis 1 region of the hippocampus

value: No


title: cmt3_IPARE_rep1

source_name: cmt3_IPARE_18 day-old seedlings


title: Biological replicate of whisker follicle in MA-self-administered rat 6

description:
FPKM-all_genes.txt
V-M-6


title: PGNs_R2_GAM181115_3NP_C01_1_S3

value: Pan-histo


title: Biological replicate of whisker follicle in MA-self-administered rat 2

description:
FPKM-all_genes.txt
V-M-2


title: Biological replicate of whisker follicle in MA-self-administered rat 3

description:
FPKM-all_genes.txt
V-M-3


title: PGNs_R2_GAM181115_3NP_A10_1_S73


title: Biological replicate of whisker follicle in MA-self-administered rat 4

description:
FPKM-all_genes.txt
V-M-4


title: PGNs_R2_GAM181115_3NP_A08_1_S57


title: PGNs_R2_GAM181115_3NP_A11_1_S81


title: Biological replicate of whisker follicle in SA-self-administered rat 6

description:
FPKM-all_genes.txt
V-S-6

value: saline


title: PGNs_R2_GAM181115_3NP_A09_1_S65


title: Biological replicate of whisker follicle in SA-self-administered rat 5

description:
FPKM-all_genes.txt
V-S-5


title: Biological replicate of whisker follicle in SA-self-administered rat 4

description:
FPKM-all_genes.txt
V-S-4


title: PGNs_R2_GAM181115_3NP_A05_1_S33


title: Biological replicate of whisker follicle in SA-self-administered rat 3

description:
FPKM-all_genes.txt
V-S-3


title: Biological replicate of whisker follicle in MA-self-administered rat 1

description:
FPKM-all_genes.txt
V-M-1


title: PGNs_R2_GAM181115_3NP_A07_1_S49


title: PGNs_R2_GAM181115_3NP_A02_1_S9


title: PGNs_R2_GAM181115_3NP_A04_1_S25