title: P_S2W, biological rep4

city: Beijing

first: Xia

last: Wang

address: No.10 Xitoutiao, You An Men

department: Department of Physiology and Pathophysiology

institute: capital medical university

description: Gene expression data from Ppara△CM mouse heart with sham surgery

hyb_protocol: Following fragmentation, 10ug of cRNA were hybridized for 16 hr at 45℃ on  [MTA-1_0] Affymetrix Mouse Transcriptome Array 1.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: Genechips were scanned by GeneChip® Scanner 3000.

data_processing: The data were analyzed with Expression Console™, Version 1.3.1.

source_name: Ppara△CM mouse with sham surgery

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-8 ug total RNA

growth_protocol: All mice were kept on a 12-h day/night lighting environment with free access to food and water.

extract_protocol: For microarray profiling, the mice heart total RNA was harvested using TRIzol reagent (Invitrogen, Carlsbad, Canada) and purified using RNeasy Mini Kit (Qiagen, Hilden, Germany) according to the manufacturer’s protocol. The amount and quality of RNA were determined using UV-Vis Spectrophotometer (Thermo, NanoDrop 2000, USA) at the absorbance of 260 nm. The mRNA expression profiling was measured using Affymetrix ClariomTM D mouse Array (Affymetrix GeneChip, Santa Clara CA, USA), which contains 65957 gene-level probe sets.

treatment_protocol: All mice were randomly undertaken sham surgery or transverse aortic constriction (TAC) for 2 weeks.Hearts were harvested 2 weeks following TAC and performed to further analysis.

value: Heart

tag: background strain

tag: genotype

value: Ppara deltaCM


title: plasma_DWM_24mo_WALTZ

status: Public on Aug 24 2021

type: protein

city: Boston

first: Jonathan

middle: M

last: Dreyfuss

state: MA

address: 1 Joslin Pl

department: Bioinformatics & Biostatistics Core

country: USA

institute: Joslin Diabetes Center

hyb_protocol: Hybridized by SomaLogic (http://somalogic.com/wp-content/uploads/2017/06/SSM-002-Technical-White-Paper_010916_LSM1.pdf)

scan_protocol: Scanned by SomaLogic (http://somalogic.com/wp-content/uploads/2017/06/SSM-002-Technical-White-Paper_010916_LSM1.pdf)

data_processing: Hybridization Control Normalization, Median Signal Normalization, and Calibration by SomaLogic.  The Relative fluorescence units provided in the sample data tables are the processed data provided by SomaLogic and these values were used to draw the conclusions for the study. Raw data were not provided by SomaLogic.

label: biotin

molecule: protein

organism: Homo sapiens

source_name: plasma

label_protocol: Biotin labeled by SomaLogic (http://somalogic.com/wp-content/uploads/2017/06/SSM-002-Technical-White-Paper_010916_LSM1.pdf)

extract_protocol: Extracted from plasma by SomaLogic (http://somalogic.com/wp-content/uploads/2017/06/SSM-002-Technical-White-Paper_010916_LSM1.pdf)

tag: tissue

value: plasma

tag: acrostic

value: WALTZ

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0


title: plasma_RYGB_12mo_VISTA

tag: tissue

tag: acrostic

value: VISTA

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

value: meal tolerance test glucose time 0 min (mg/dl):62

value: meal tolerance test glucose time 15 min (mg/dl):106

value: meal tolerance test glucose time 30 min (mg/dl):106

value: meal tolerance test glucose time 60 min (mg/dl):108

value: meal tolerance test glucose time 120 min (mg/dl):73

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):40.8689994812012

value: meal tolerance test insulin time 30 min (mcU/ml):11.3039999008179

value: meal tolerance test insulin time 60 min (mcU/ml):11.0550003051758

value: meal tolerance test insulin time 120 min (mcU/ml):3.15000009536743

tag: homair

tag: matsuda

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):1482.975

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1104.975

value: change in insulin from 0 to 30 min (mcU/ml):8.153999

value: change in glucose from 0 to 30 min (mg/dl):44

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.1853182

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0588312


title: rAQP4_IgG_rep2

type: SRA

city: Suita

first: Daisuke

last: Okuzaki

state: Osaka

address: Yamadaoka 3-1

department: Immunology Frontier Research Center

country: Japan

institute: Osaka univ.

description: spinal cords of rats receiving rAQP4-IgG_rep2

library_source: transcriptomic

data_processing:
Sequencing was performed on an Illumina HiSeq 2500 platform in a 75-base single-end mode.
Illumina Casava1.8.2 software used for basecalling.
Sequenced reads were mapped to the rat reference genome sequences (rn6) using TopHat v2.0.13 in combination with Bowtie2 ver. 2.2.3 and SAMtools ver. 0.1.19.
The raw read counts was calculated using Cufflinks version 2.2.1.
Genome_build: rn6
Supplementary_files_format_and_content: counts

molecule: total RNA

organism: Rattus norvegicus

source_name: rAQP4 IgG group_rep2

extract_protocol:
Total RNA was prepared using ISOGENⅡ(Nippongene) according to the manufacturer’s instructions.
Library preparation was performed using a TruSeq stranded mRNA sample prep kit (Illumina, San Diego, CA) according to the manufacturer’s instructions.

treatment_protocol: For transcriptome analysis in spinal cord tissue, NMOSD or control rats were transcardially perfused with ice-cold PBS under anesthesia with i.p. injection of a mixture of Dormicam, 4 mg/kg; Vetorphale, 5 mg/kg; Domitor 4 mg/kg. Spinal cords (n =3 each group) were cut out at Th10 level

tag: tissue

value: Spinal cords

tag: treatment


title: P_T2W, biological rep2

type: RNA

country: China

description: Gene expression data from Ppara△CM mouse heart with TAC2W surgery

organism: Mus musculus

source_name: Ppara△CM mouse with TAC surgery

value: Heart

tag: background strain

tag: genotype

value: Ppara deltaCM


title: rAQP4_IgG_rep1

description: spinal cords of rats receiving rAQP4-IgG_rep1

source_name: rAQP4 IgG group_rep1


title: ctrl_IgG_rep3

description: spinal cords of rats receiving control IgG_rep3

source_name: control IgG treated group_rep3


title: ctrl_IgG_rep2

description: spinal cords of rats receiving control IgG_rep2

source_name: control IgG treated group_rep2


title: P_S2W, biological rep2


title: plasma_RYGB_36mo_FENCE

value: plasma

tag: acrostic

value: FENCE

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0


title: P_S2W, biological rep1

tag: tissue

tag: background strain

tag: genotype


title: N_T2W, biological rep3

description: Gene expression data from Pparafl/fl mouse heart with TAC2W surgery

source_name: Pparafl/fl mouse with TAC surgery

value: Ppara fl/fl


title: N_T2W, biological rep4


title: N_S2W, biological rep3

description: Gene expression data from Pparafl/fl mouse heart with sham surgery

source_name: Pparafl/fl mouse with sham surgery


title: P_T2W, biological rep4


title: ctrl_IgG_rep1

description: spinal cords of rats receiving control IgG_rep1

source_name: control IgG treated group_rep1

tag: treatment


title: N_S2W, biological rep2


title: P_S2W, biological rep3


title: N_T2W, biological rep2


title: P_T2W, biological rep1


title: N_S2W, biological rep1


title: N_T2W, biological rep1


title: N_S2W, biological rep4


title: 35S::AtCKX2_infected_T30d_rep5

city: Piracicaba

first: Paulo

last: Teixeira

state: SP

address: Av. Pádua Dias, 11

department: Biology

country: Brazil

institute: University of São Paulo (ESALQ/USP)

data_processing:
Illumina Casava version 1.8 was used for basecalling
Quality assessment of the sequencing reads was performed using FastQC
Trimmomatic was used to identify and discard reads containing Illumina adapter sequences
Quality-filtered reads were mapped to the Solanum Lycopersicum ITAG3.1 genome using HISAT2
The featureCounts function from the subread package was used to count reads that mapped to protein-coding genes
Genome_build: ITAG3.1
Supplementary_files_format_and_content: tab-delimited text file including read counts per gene for each sample

organism: Solanum lycopersicum

source_name: Shoots

growth_protocol: Wild-type MT and the transgenic line 35S::AtCKX2 were germinated in a 1:1 mixture of substrate:expanded vermiculite and grown under controlled conditions in a growth chamber at 25oC, 14 h photophase and 80% humidity.

extract_protocol:
TRIzol reagent
poly(A) RNA was isolated from 1000 ng total RNA and used to prepare Illumina RNA-seq libraries using the KAPA Stranded RNA-Seq kit.

treatment_protocol: The shoot apex and axillary buds of 17-d-old tomato seedlings of MT and the transgenic line 35S::AtCKX2 were inoculated with 70 µL of 10^6 basidiospores in 0.3% agar-water (w/v), and the plants were kept in a humid chamber for 48 h. Control plants were treated with 0.3% agar-water. Plants were kept under controlled conditions in a growth chamber at 25oC, 14 h photophase and 80% humidity.

tag: cutivar

value: Micro-Tom

value: Infected

tag: time


title: 35S::AtCKX2_infected_T30d_rep2


title: 35S::AtCKX2_infected_T30d_rep3


title: 35S::AtCKX2_infected_T30d_rep1


title: 35S::AtCKX2_mock_T30d_rep5

value: Mock


title: 35S::AtCKX2_infected_T30d_rep4


title: plasma_RYGB_24mo_IMAGE

tag: acrostic

value: IMAGE

tag: group

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)


title: plasma_DWM_3mo_RADIO

tag: tissue

tag: acrostic

value: RADIO

value: DWM

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):130

value: meal tolerance test glucose time 15 min (mg/dl):144

value: meal tolerance test glucose time 30 min (mg/dl):167

value: meal tolerance test glucose time 60 min (mg/dl):202

value: meal tolerance test glucose time 120 min (mg/dl):188

value: meal tolerance test insulin time 0 min (mcU/ml):4.75099992752075

value: meal tolerance test insulin time 15 min (mcU/ml):10.3999996185303

value: meal tolerance test insulin time 30 min (mcU/ml):11.2550001144409

value: meal tolerance test insulin time 60 min (mcU/ml):13.8610000610352

value: meal tolerance test insulin time 120 min (mcU/ml):9.41600036621094

tag: homair

tag: homab

tag: matsuda

tag: dmcure

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):1351.095

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):780.975

value: change in insulin from 0 to 30 min (mcU/ml):6.504

value: change in glucose from 0 to 30 min (mg/dl):37

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.1757838

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0369993


title: 35S::AtCKX2_mock_T30d_rep4

tag: genotype

tag: cutivar

value: Micro-Tom

tag: treatment

value: Mock

tag: time


title: plasma_DWM_12mo_IVORY

tag: tissue

value: plasma

tag: acrostic

value: IVORY

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

value: meal tolerance test glucose time 0 min (mg/dl):105

value: meal tolerance test glucose time 15 min (mg/dl):147

value: meal tolerance test glucose time 30 min (mg/dl):149

value: meal tolerance test glucose time 60 min (mg/dl):175

value: meal tolerance test glucose time 120 min (mg/dl):172

value: meal tolerance test insulin time 0 min (mcU/ml):3.45000004768372

value: meal tolerance test insulin time 15 min (mcU/ml):6.1269998550415

value: meal tolerance test insulin time 30 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 60 min (mcU/ml):3.64000010490417

value: meal tolerance test insulin time 120 min (mcU/ml):6.18400001525879

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

value: insulin total area under curve (mcU/ml · 120 min):537.975

value: insulin incremental area under curve (mcU/ml · 120 min):123.975

value: change in insulin from 0 to 30 min (mcU/ml):-0.3

value: change in glucose from 0 to 30 min (mg/dl):44

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):-0.0068182

value: oral disposition index = dinsg030 / mttins0:-0.0019763


title: plasma_DWM_3mo_EAGLE

tag: tissue

value: plasma

tag: acrostic

value: EAGLE

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):213

value: meal tolerance test glucose time 15 min (mg/dl):209

value: meal tolerance test glucose time 30 min (mg/dl):232

value: meal tolerance test glucose time 60 min (mg/dl):295

value: meal tolerance test glucose time 120 min (mg/dl):264

value: meal tolerance test insulin time 0 min (mcU/ml):11.9130001068115

value: meal tolerance test insulin time 15 min (mcU/ml):10.3999996185303

value: meal tolerance test insulin time 30 min (mcU/ml):17.1340007781982

value: meal tolerance test insulin time 60 min (mcU/ml):25.7639999389648

value: meal tolerance test insulin time 120 min (mcU/ml):27.0799999237061

tag: homair

tag: homab

tag: matsuda

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2602.643

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1173.083

value: change in insulin from 0 to 30 min (mcU/ml):5.221001

value: change in glucose from 0 to 30 min (mg/dl):19

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.2747895

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0230664


title: plasma_DWM_24mo_TOPAZ

tag: tissue

value: plasma

value: TOPAZ

value: DWM

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)


title: 35S::AtCKX2_mock_T30d_rep3

tag: genotype

tag: cutivar

value: Micro-Tom

tag: treatment

value: Mock

tag: time


title: 35S::AtCKX2_mock_T30d_rep2


title: 35S::AtCKX2_mock_T30d_rep1


title: 35S::AtCKX2_infected_T10d_rep5

value: Infected


title: plasma_DWM_0mo_JUROR

tag: tissue

tag: acrostic

value: JUROR

tag: group

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):95

value: meal tolerance test glucose time 15 min (mg/dl):93

value: meal tolerance test glucose time 30 min (mg/dl):100

value: meal tolerance test glucose time 60 min (mg/dl):152

value: meal tolerance test glucose time 120 min (mg/dl):131

value: meal tolerance test insulin time 0 min (mcU/ml):18.4769992828369

value: meal tolerance test insulin time 15 min (mcU/ml):19.4020004272461

value: meal tolerance test insulin time 30 min (mcU/ml):40.625

value: meal tolerance test insulin time 60 min (mcU/ml):67.4329986572266

value: meal tolerance test insulin time 120 min (mcU/ml):59.9360008239746

tag: homair

tag: homab

tag: matsuda

tag: dmcure

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):6176.235

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):3958.995

value: change in insulin from 0 to 30 min (mcU/ml):22.148

value: change in glucose from 0 to 30 min (mg/dl):5

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):4.4296

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.2397359


title: 35S::AtCKX2_infected_T10d_rep4

tag: genotype

tag: cutivar

value: Micro-Tom

tag: treatment

value: Infected

tag: time


title: plasma_RYGB_0mo_LAKES

tag: tissue

value: plasma

tag: acrostic

value: LAKES

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

value: meal tolerance test glucose time 0 min (mg/dl):137

value: meal tolerance test glucose time 15 min (mg/dl):142

value: meal tolerance test glucose time 30 min (mg/dl):163

value: meal tolerance test glucose time 60 min (mg/dl):205

value: meal tolerance test glucose time 120 min (mg/dl):181

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):17.0839996337891

value: meal tolerance test insulin time 30 min (mcU/ml):19.9750003814697

value: meal tolerance test insulin time 60 min (mcU/ml):23.8360004425049

value: meal tolerance test insulin time 120 min (mcU/ml):5.16800022125244

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):1956.983

value: insulin incremental area under curve (mcU/ml · 120 min):1578.983

value: change in insulin from 0 to 30 min (mcU/ml):16.825

value: change in glucose from 0 to 30 min (mg/dl):26

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.6471154

value: oral disposition index = dinsg030 / mttins0:0.2054335


title: 35S::AtCKX2_infected_T10d_rep2

tag: genotype

tag: cutivar

value: Micro-Tom

tag: treatment

value: Infected

tag: time


title: 35S::AtCKX2_infected_T10d_rep1


title: 35S::AtCKX2_mock_T10d_rep5

value: Mock


title: 35S::AtCKX2_mock_T10d_rep4


title: Pre-treatment Breast Cancer Biopsy 266840

city: Novato

first: Christina

last: Yau

state: CA

address: 8001 Redwood Blvd

institute: Buck Institute of Age Research

data_processing: gnormalized signal (log2) data, as provided in the raw files on each patient, was extracted and aligned to the 75th quantile across arrays by Agendia. All values indicated for non-conformity, as indicated by the 'gIsFeatNonUnifOL' column in the raw files, are NA'd out. Probeset level data per array were mean-collapsed to the gene level, and genes common to the two platforms identified.  Expression data from the first ~900 I-SPY 2 patients distributed over the two platforms were combined into a single gene-level dataset over the set of common genes after batch-adjusting using ComBat [PMID:16632515].  The data matrix for this study constitutes 127 samples from this larger COMBAT-combined expression set.  Linear adjustment factors were derived from the larger ComBat operation, per platform, and can be used against these 127 samples for batch correcting on raw files.  The linear adjustment factors and updated probe annotation files per platform are provided.

source_name: Breast cancer biopsy (pre-treatment)

extract_protocol: Extraction, labeling, hybridization, and scanning are performed by Agendia Inc (Irvine, CA).  This company is referenced by the platforms used: GPL20078 and GPL16233.

tag: hr

tag: mp

tag: pcr

tag: arm

value: TH Control


title: 35S::AtCKX2_mock_T10d_rep3


title: 35S::AtCKX2_infected_T5d_rep5


title: plasma_RYGB_12mo_IMAGE

tag: tissue

value: plasma

tag: acrostic

value: IMAGE

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):77

value: meal tolerance test glucose time 15 min (mg/dl):142

value: meal tolerance test glucose time 30 min (mg/dl):168

value: meal tolerance test glucose time 60 min (mg/dl):152

value: meal tolerance test glucose time 120 min (mg/dl):121

value: meal tolerance test insulin time 15 min (mcU/ml):33.6559982299805

value: meal tolerance test insulin time 30 min (mcU/ml):45.5830001831055

value: meal tolerance test insulin time 60 min (mcU/ml):28.2369995117188

value: meal tolerance test insulin time 120 min (mcU/ml):5.10099983215332

tag: homair

tag: homab

value: HOMA-B cell (%):81

tag: matsuda

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2977.777

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):2599.777

value: change in insulin from 0 to 30 min (mcU/ml):42.433

value: change in glucose from 0 to 30 min (mg/dl):91

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.4662967

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.1480307


title: 35S::AtCKX2_mock_T10d_rep1

tag: genotype

tag: cutivar

value: Micro-Tom

tag: treatment

value: Mock

tag: time


title: 35S::AtCKX2_infected_T5d_rep4

value: Infected


title: 35S::AtCKX2_infected_T5d_rep3


title: plasma_DWM_0mo_TANGO

tag: tissue

value: plasma

tag: acrostic

value: TANGO

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

value: meal tolerance test glucose time 0 min (mg/dl):150

value: meal tolerance test glucose time 15 min (mg/dl):156

value: meal tolerance test glucose time 30 min (mg/dl):168

value: meal tolerance test glucose time 60 min (mg/dl):209

value: meal tolerance test glucose time 120 min (mg/dl):231

value: meal tolerance test insulin time 0 min (mcU/ml):10.1300001144409

value: meal tolerance test insulin time 15 min (mcU/ml):11.5839996337891

value: meal tolerance test insulin time 30 min (mcU/ml):19.7569999694824

value: meal tolerance test insulin time 60 min (mcU/ml):19.5440006256104

value: meal tolerance test insulin time 120 min (mcU/ml):24.0230007171631

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):2294.438

value: insulin incremental area under curve (mcU/ml · 120 min):1078.838

value: change in insulin from 0 to 30 min (mcU/ml):9.627

value: change in glucose from 0 to 30 min (mg/dl):18

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.5348333

value: oral disposition index = dinsg030 / mttins0:0.052797


title: 35S::AtCKX2_infected_T5d_rep2

tag: genotype

tag: cutivar

value: Micro-Tom

tag: treatment

value: Infected

tag: time


title: 35S::AtCKX2_infected_T10d_rep3


title: 35S::AtCKX2_mock_T5d_rep4

value: Mock


title: 35S::AtCKX2_infected_T5d_rep1


title: 35S::AtCKX2_mock_T5d_rep5


title: plasma_DWM_12mo_FILMS

tag: tissue

value: plasma

tag: acrostic

value: FILMS

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):219

value: meal tolerance test glucose time 15 min (mg/dl):226

value: meal tolerance test glucose time 30 min (mg/dl):267

value: meal tolerance test glucose time 60 min (mg/dl):280

value: meal tolerance test glucose time 120 min (mg/dl):272

value: meal tolerance test insulin time 0 min (mcU/ml):10.0620002746582

value: meal tolerance test insulin time 15 min (mcU/ml):20.6909999847412

value: meal tolerance test insulin time 30 min (mcU/ml):24.6889991760254

value: meal tolerance test insulin time 60 min (mcU/ml):24.6280002593994

value: meal tolerance test insulin time 120 min (mcU/ml):20.6909999847412

tag: homair

tag: homab

tag: matsuda

tag: dmcure

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2670.323

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1462.882

value: change in insulin from 0 to 30 min (mcU/ml):14.627

value: change in glucose from 0 to 30 min (mg/dl):48

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.3047291

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0302851


title: 35S::AtCKX2_mock_T5d_rep3

tag: genotype

tag: cutivar

value: Micro-Tom

tag: treatment

value: Mock

tag: time


title: plasma_RYGB_0mo_FENCE

tag: tissue

value: plasma

tag: acrostic

value: FENCE

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

value: meal tolerance test glucose time 0 min (mg/dl):146

value: meal tolerance test glucose time 15 min (mg/dl):155

value: meal tolerance test glucose time 30 min (mg/dl):175

value: meal tolerance test glucose time 60 min (mg/dl):211

value: meal tolerance test glucose time 120 min (mg/dl):186

value: meal tolerance test insulin time 0 min (mcU/ml):34.4679985046387

value: meal tolerance test insulin time 15 min (mcU/ml):36.6870002746582

value: meal tolerance test insulin time 30 min (mcU/ml):52.3370018005371

value: meal tolerance test insulin time 60 min (mcU/ml):70.0739974975586

value: meal tolerance test insulin time 120 min (mcU/ml):46.515998840332

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):6535.208

value: insulin incremental area under curve (mcU/ml · 120 min):2399.048

value: change in insulin from 0 to 30 min (mcU/ml):17.869

value: change in glucose from 0 to 30 min (mg/dl):29

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.6161726

value: oral disposition index = dinsg030 / mttins0:0.0178767


title: 35S::AtCKX2_mock_T5d_rep1

tag: genotype

tag: cutivar

value: Micro-Tom

tag: treatment

value: Mock

tag: time


title: 35S::AtCKX2_mock_T5d_rep2


title: plasma_DWM_24mo_JUROR

tag: tissue

value: plasma

tag: acrostic

value: JUROR

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure


title: plasma_RYGB_0mo_VENUE

value: VENUE

value: RYGB

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

value: meal tolerance test glucose time 0 min (mg/dl):197

value: meal tolerance test glucose time 15 min (mg/dl):197

value: meal tolerance test glucose time 30 min (mg/dl):217

value: meal tolerance test glucose time 60 min (mg/dl):245

value: meal tolerance test glucose time 120 min (mg/dl):255

value: meal tolerance test insulin time 0 min (mcU/ml):9.84799957275391

value: meal tolerance test insulin time 15 min (mcU/ml):13.4610004425049

value: meal tolerance test insulin time 30 min (mcU/ml):13.621000289917

value: meal tolerance test insulin time 60 min (mcU/ml):19.5830001831055

value: meal tolerance test insulin time 120 min (mcU/ml):19.5830001831055

tag: homair

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2050.972

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):869.2126

value: change in insulin from 0 to 30 min (mcU/ml):3.773001

value: change in glucose from 0 to 30 min (mg/dl):20

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.18865

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0191562


title: plasma_DWM_24mo_FILMS

tag: tissue

value: plasma

tag: acrostic

value: FILMS

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0


title: plasma_DWM_12mo_ELBOW

tag: tissue

tag: acrostic

value: ELBOW

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

value: meal tolerance test glucose time 0 min (mg/dl):69

value: meal tolerance test glucose time 15 min (mg/dl):90

value: meal tolerance test glucose time 30 min (mg/dl):110

value: meal tolerance test glucose time 60 min (mg/dl):109

value: meal tolerance test glucose time 120 min (mg/dl):106

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):3.47699999809265

value: meal tolerance test insulin time 30 min (mcU/ml):16.5669994354248

value: meal tolerance test insulin time 60 min (mcU/ml):8.97299957275391

value: meal tolerance test insulin time 120 min (mcU/ml):8.32499980926514

tag: homair

tag: homab

value: HOMA-B cell (%):189

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):1102.073

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):724.0724

value: change in insulin from 0 to 30 min (mcU/ml):13.417

value: change in glucose from 0 to 30 min (mg/dl):41

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.3272439

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.1038869


title: 35S::AtCKX2_infected_T48h_rep4

tag: genotype

tag: cutivar

value: Micro-Tom

tag: treatment

value: Infected

tag: time


title: 35S::AtCKX2_mock_T10d_rep2

value: Mock


title: 35S::AtCKX2_infected_T48h_rep5


title: plasma_RYGB_3mo_VENUE

tag: tissue

value: plasma

tag: acrostic

value: VENUE

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):130

value: meal tolerance test glucose time 15 min (mg/dl):170

value: meal tolerance test glucose time 30 min (mg/dl):211

value: meal tolerance test glucose time 60 min (mg/dl):210

value: meal tolerance test glucose time 120 min (mg/dl):180

value: meal tolerance test insulin time 0 min (mcU/ml):12.0089998245239

value: meal tolerance test insulin time 15 min (mcU/ml):9.33100032806396

value: meal tolerance test insulin time 30 min (mcU/ml):9.91699981689453

value: meal tolerance test insulin time 60 min (mcU/ml):11.1630001068115

value: meal tolerance test insulin time 120 min (mcU/ml):8.63899993896484

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):1214.67

value: insulin incremental area under curve (mcU/ml · 120 min):-226.41

value: change in insulin from 0 to 30 min (mcU/ml):-2.092

value: change in glucose from 0 to 30 min (mg/dl):81

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):-0.0258272

value: oral disposition index = dinsg030 / mttins0:-0.0021507


title: 35S::AtCKX2_infected_T48h_rep3

tag: genotype

tag: cutivar

value: Micro-Tom

tag: treatment

value: Infected

tag: time


title: 35S::AtCKX2_infected_T48h_rep2


title: plasma_RYGB_0mo_QUART

tag: tissue

value: plasma

tag: acrostic

value: QUART

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

value: meal tolerance test glucose time 0 min (mg/dl):248

value: meal tolerance test glucose time 15 min (mg/dl):228

value: meal tolerance test glucose time 30 min (mg/dl):257

value: meal tolerance test glucose time 60 min (mg/dl):307

value: meal tolerance test glucose time 120 min (mg/dl):257

value: meal tolerance test insulin time 0 min (mcU/ml):5.22700023651123

value: meal tolerance test insulin time 15 min (mcU/ml):6.84700012207031

value: meal tolerance test insulin time 30 min (mcU/ml):23.988000869751

value: meal tolerance test insulin time 60 min (mcU/ml):34.0629997253418

value: meal tolerance test insulin time 120 min (mcU/ml):14.1770000457764

tag: homair

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2639.782

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):2012.542

value: change in insulin from 0 to 30 min (mcU/ml):18.761

value: change in glucose from 0 to 30 min (mg/dl):9

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):2.084556

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.3988054


title: Pre-treatment Breast Cancer Biopsy 220471

hyb_protocol: Extraction, labeling, hybridization, and scanning are performed by Agendia Inc (Irvine, CA).

tag: hr

tag: mp

tag: pcr

tag: arm

value: TH Control


title: 35S::AtCKX2_mock_T48h_rep5

tag: genotype

tag: cutivar

value: Micro-Tom

tag: treatment

value: Mock

tag: time


title: plasma_RYGB_36mo_QUART

tag: tissue

value: plasma

tag: acrostic

value: QUART

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0


title: 35S::AtCKX2_mock_T48h_rep4

tag: genotype

tag: cutivar

tag: treatment

tag: time


title: 35S::AtCKX2_mock_T48h_rep1


title: 35S::AtCKX2_mock_T48h_rep3


title: 35S::AtCKX2_mock_T48h_rep2


title: plasma_DWM_12mo_EAGLE

tag: tissue

tag: acrostic

value: EAGLE

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

value: meal tolerance test glucose time 0 min (mg/dl):226

value: meal tolerance test glucose time 15 min (mg/dl):260

value: meal tolerance test glucose time 30 min (mg/dl):287

value: meal tolerance test glucose time 60 min (mg/dl):332

value: meal tolerance test glucose time 120 min (mg/dl):291

value: meal tolerance test insulin time 0 min (mcU/ml):11.1630001068115

value: meal tolerance test insulin time 15 min (mcU/ml):11.9700002670288

value: meal tolerance test insulin time 30 min (mcU/ml):12.5059995651245

value: meal tolerance test insulin time 60 min (mcU/ml):14.7340002059937

value: meal tolerance test insulin time 120 min (mcU/ml):11.6120004653931

tag: homair

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):1556.047

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):216.4875

value: change in insulin from 0 to 30 min (mcU/ml):1.342999

value: change in glucose from 0 to 30 min (mg/dl):61

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.0220164

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0019723


title: plasma_RYGB_24mo_SCOPE

tag: tissue

value: plasma

tag: acrostic

value: SCOPE

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0


title: plasma_RYGB_3mo_QUART

tag: tissue

tag: acrostic

value: QUART

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

value: meal tolerance test glucose time 0 min (mg/dl):126

value: meal tolerance test glucose time 15 min (mg/dl):194

value: meal tolerance test glucose time 30 min (mg/dl):187

value: meal tolerance test glucose time 60 min (mg/dl):157

value: meal tolerance test glucose time 120 min (mg/dl):122

value: meal tolerance test insulin time 0 min (mcU/ml):5.58400011062622

value: meal tolerance test insulin time 15 min (mcU/ml):127.003997802734

value: meal tolerance test insulin time 30 min (mcU/ml):136.406997680664

value: meal tolerance test insulin time 60 min (mcU/ml):41.9370002746582

value: meal tolerance test insulin time 120 min (mcU/ml):10.6940002441406

tag: homair

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):7224.083

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):6554.002

value: change in insulin from 0 to 30 min (mcU/ml):130.823

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):2.144639

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.3840686


title: 35S::AtCKX2_infected_T24h_rep5

tag: genotype

tag: cutivar

value: Micro-Tom

tag: treatment

value: Infected

tag: time


title: 35S::AtCKX2_infected_T24h_rep4


title: Pre-treatment Breast Cancer Biopsy 162562

scan_protocol: Extraction, labeling, hybridization, and scanning are performed by Agendia Inc (Irvine, CA).

tag: hr

tag: mp

tag: pcr

tag: arm

value: TH Control


title: plasma_DWM_0mo_FILMS

tag: tissue

value: plasma

tag: acrostic

value: FILMS

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):190

value: meal tolerance test glucose time 15 min (mg/dl):192

value: meal tolerance test glucose time 30 min (mg/dl):208

value: meal tolerance test glucose time 60 min (mg/dl):288

value: meal tolerance test glucose time 120 min (mg/dl):256

value: meal tolerance test insulin time 0 min (mcU/ml):12.1630001068115

value: meal tolerance test insulin time 15 min (mcU/ml):15.1540002822876

value: meal tolerance test insulin time 30 min (mcU/ml):20.8150005340576

value: meal tolerance test insulin time 60 min (mcU/ml):45.3079986572266

value: meal tolerance test insulin time 120 min (mcU/ml):23.2810001373291

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):3524.16

value: insulin incremental area under curve (mcU/ml · 120 min):2064.6

value: change in insulin from 0 to 30 min (mcU/ml):8.652

value: change in glucose from 0 to 30 min (mg/dl):18

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.4806667

value: oral disposition index = dinsg030 / mttins0:0.0395188


title: 35S::AtCKX2_infected_T24h_rep3

tag: genotype

tag: cutivar

value: Micro-Tom

tag: treatment

value: Infected

tag: time


title: 35S::AtCKX2_infected_T48h_rep1


title: 35S::AtCKX2_mock_T24h_rep4

value: Mock


title: plasma_DWM_12mo_RODEO

tag: tissue

value: plasma

tag: acrostic

value: RODEO

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

value: meal tolerance test glucose time 0 min (mg/dl):131

value: meal tolerance test glucose time 15 min (mg/dl):152

value: meal tolerance test glucose time 30 min (mg/dl):182

value: meal tolerance test glucose time 60 min (mg/dl):206

value: meal tolerance test glucose time 120 min (mg/dl):200

value: meal tolerance test insulin time 0 min (mcU/ml):3.84599995613098

value: meal tolerance test insulin time 15 min (mcU/ml):9.05599975585938

value: meal tolerance test insulin time 30 min (mcU/ml):17.0839996337891

value: meal tolerance test insulin time 60 min (mcU/ml):15.1450004577637

value: meal tolerance test insulin time 120 min (mcU/ml):18.5349998474121

tag: homair

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):1786.65

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1325.13

value: change in insulin from 0 to 30 min (mcU/ml):13.238

value: change in glucose from 0 to 30 min (mg/dl):51

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.2595686

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0674905


title: 35S::AtCKX2_mock_T24h_rep3

tag: genotype

tag: cutivar

value: Micro-Tom

tag: treatment

value: Mock

tag: time


title: 35S::AtCKX2_infected_T24h_rep2

value: Infected


title: 35S::AtCKX2_mock_T24h_rep5


title: 35S::AtCKX2_mock_T24h_rep2


title: plasma_RYGB_12mo_XEROX

tag: tissue

value: plasma

tag: acrostic

value: XEROX

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):89

value: meal tolerance test glucose time 15 min (mg/dl):188

value: meal tolerance test glucose time 30 min (mg/dl):200

value: meal tolerance test glucose time 60 min (mg/dl):172

value: meal tolerance test glucose time 120 min (mg/dl):136

value: meal tolerance test insulin time 0 min (mcU/ml):5.9520001411438

value: meal tolerance test insulin time 15 min (mcU/ml):77.6890029907227

value: meal tolerance test insulin time 30 min (mcU/ml):100.09700012207

value: meal tolerance test insulin time 60 min (mcU/ml):35.7939987182617

value: meal tolerance test insulin time 120 min (mcU/ml):21.136999130249

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

value: insulin total area under curve (mcU/ml · 120 min):5706.998

value: insulin incremental area under curve (mcU/ml · 120 min):4992.757

value: change in insulin from 0 to 30 min (mcU/ml):94.145

value: change in glucose from 0 to 30 min (mg/dl):111

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.8481531

value: oral disposition index = dinsg030 / mttins0:0.1424988


title: plasma_DWM_36mo_HUMAN

tag: tissue

value: plasma

tag: acrostic

value: HUMAN

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0


title: 35S::AtCKX2_mock_T24h_rep1

tag: genotype

tag: cutivar

value: Micro-Tom

tag: treatment

value: Mock

tag: time


title: plasma_DWM_36mo_FOGGY

value: FOGGY

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure


title: plasma_RYGB_36mo_BLUSH

tag: tissue

tag: acrostic

value: BLUSH

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)


title: 35S::AtCKX2_infected_T12h_rep5

tag: genotype

tag: cutivar

tag: treatment

value: Infected

tag: time


title: Pre-treatment Breast Cancer Biopsy 123660

label_protocol: Extraction, labeling, hybridization, and scanning are performed by Agendia Inc (Irvine, CA).

tag: hr

tag: mp

tag: pcr

tag: arm

value: TH Control


title: 35S::AtCKX2_mock_T12h_rep5


title: plasma_DWM_3mo_TANGO

tag: tissue

tag: acrostic

value: TANGO

tag: group

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):116

value: meal tolerance test glucose time 15 min (mg/dl):124

value: meal tolerance test glucose time 30 min (mg/dl):143

value: meal tolerance test glucose time 60 min (mg/dl):197

value: meal tolerance test glucose time 120 min (mg/dl):199

value: meal tolerance test insulin time 0 min (mcU/ml):4.8439998626709

value: meal tolerance test insulin time 15 min (mcU/ml):9.04100036621094

value: meal tolerance test insulin time 30 min (mcU/ml):16.1019992828369

value: meal tolerance test insulin time 60 min (mcU/ml):24.6439990997314

value: meal tolerance test insulin time 120 min (mcU/ml):17.2590007781982

tag: homair

tag: homab

tag: matsuda

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2160.99

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1579.71

value: change in insulin from 0 to 30 min (mcU/ml):11.258

value: change in glucose from 0 to 30 min (mg/dl):27

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.416963

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0860782


title: 35S::AtCKX2_infected_T12h_rep4

tag: genotype

tag: cutivar

value: Micro-Tom

tag: treatment

value: Infected

tag: time


title: 35S::AtCKX2_infected_T24h_rep1


title: 35S::AtCKX2_mock_T12h_rep2

value: Mock


title: 35S::AtCKX2_mock_T12h_rep1


title: 35S::AtCKX2_mock_T12h_rep4


title: 35S::AtCKX2_mock_T12h_rep3


title: plasma_RYGB_0mo_KAYAK

tag: tissue

value: plasma

tag: acrostic

value: KAYAK

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

value: meal tolerance test glucose time 0 min (mg/dl):100

value: meal tolerance test glucose time 15 min (mg/dl):132

value: meal tolerance test glucose time 30 min (mg/dl):133

value: meal tolerance test glucose time 60 min (mg/dl):178

value: meal tolerance test glucose time 120 min (mg/dl):156

value: meal tolerance test insulin time 0 min (mcU/ml):8.27600002288818

value: meal tolerance test insulin time 15 min (mcU/ml):38.3839988708496

value: meal tolerance test insulin time 30 min (mcU/ml):30.0919990539551

value: meal tolerance test insulin time 60 min (mcU/ml):39.4850006103516

value: meal tolerance test insulin time 120 min (mcU/ml):51.4129981994629

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):4634.115

value: insulin incremental area under curve (mcU/ml · 120 min):3640.995

value: change in insulin from 0 to 30 min (mcU/ml):21.816

value: change in glucose from 0 to 30 min (mg/dl):33

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.6610909

value: oral disposition index = dinsg030 / mttins0:0.0798805


title: plasma_DWM_3mo_DAISY

tag: tissue

value: plasma

tag: acrostic

value: DAISY

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):163

value: meal tolerance test glucose time 15 min (mg/dl):174

value: meal tolerance test glucose time 30 min (mg/dl):205

value: meal tolerance test glucose time 60 min (mg/dl):255

value: meal tolerance test glucose time 120 min (mg/dl):247

value: meal tolerance test insulin time 0 min (mcU/ml):12.5080003738403

value: meal tolerance test insulin time 15 min (mcU/ml):11.539999961853

value: meal tolerance test insulin time 30 min (mcU/ml):47.5779991149902

value: meal tolerance test insulin time 60 min (mcU/ml):45.1730003356934

value: meal tolerance test insulin time 120 min (mcU/ml):74.2829971313477

tag: homair

tag: homab

tag: matsuda

tag: dmcure

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):5598.69

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):4097.73

value: change in insulin from 0 to 30 min (mcU/ml):35.07

value: change in glucose from 0 to 30 min (mg/dl):42

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.835

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0667573


title: plasma_RYGB_0mo_RELIC

tag: tissue

value: plasma

value: RELIC

value: RYGB

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

value: meal tolerance test glucose time 0 min (mg/dl):181

value: meal tolerance test glucose time 15 min (mg/dl):196

value: meal tolerance test glucose time 30 min (mg/dl):227

value: meal tolerance test glucose time 60 min (mg/dl):245

value: meal tolerance test glucose time 120 min (mg/dl):214

value: meal tolerance test insulin time 0 min (mcU/ml):16.7929992675781

value: meal tolerance test insulin time 15 min (mcU/ml):10.2180004119873

value: meal tolerance test insulin time 30 min (mcU/ml):53.4900016784668

value: meal tolerance test insulin time 60 min (mcU/ml):35.4259986877441

value: meal tolerance test insulin time 120 min (mcU/ml):8.08199977874756

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):3319.373

value: insulin incremental area under curve (mcU/ml · 120 min):1304.213

value: change in insulin from 0 to 30 min (mcU/ml):36.697

value: change in glucose from 0 to 30 min (mg/dl):46

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.7977609

value: oral disposition index = dinsg030 / mttins0:0.0475056


title: 970839

city: San Francisco

first: Denise

last: Wolf

address: 2340 Sutter st

institute: University of California, San Francisco

hyb_protocol: Performed by Agendia Inc (Irvine, CA)

scan_protocol: Performed by Agendia Inc (Irvine, CA)

data_processing:
gnormalized signal (log2) data, as provided in the raw files on each patient, was extracted and aligned to the 75th quantile across arrays by Agendia. All values indicated for non-conformity, as indicated by the 'gIsFeatNonUnifOL' column in the raw files, are NA'd out. Probeset level data per array were mean-collapsed to the gene level, and genes common to the two platforms identified.  Expression data from the first ~900 I-SPY 2 patients distributed over the two platforms were combined into a single gene-level dataset over the set of common genes after batch-adjusting using ComBat [PMID:16632515].  The data matrix for this study constitutes 233 samples from this larger COMBAT-combined expression set.  Linear adjustment factors were derived from the larger ComBat operation, per platform, and can be used against these 233 samples for batch correcting on raw files.  The linear adjustment factors and updated probe annotation files per platform are provided.
The data matrix provided contains platform corrected, normalized expression values from two different platforms.  Data is collapsed on the gene level as was used in the analysis.

label_protocol: Performed by Agendia Inc (Irvine, CA)

tag: tissue

value: breast cancer

tag: hr

tag: mp

tag: pcr

tag: arm

value: Control Arm


title: plasma_DWM_0mo_TOPAZ

value: plasma

tag: acrostic

value: TOPAZ

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):80

value: meal tolerance test glucose time 15 min (mg/dl):90

value: meal tolerance test glucose time 30 min (mg/dl):109

value: meal tolerance test glucose time 60 min (mg/dl):129

value: meal tolerance test glucose time 120 min (mg/dl):155

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):6.46400022506714

value: meal tolerance test insulin time 30 min (mcU/ml):13.7919998168945

value: meal tolerance test insulin time 60 min (mcU/ml):11.8859996795654

value: meal tolerance test insulin time 120 min (mcU/ml):9.40900039672852

tag: homair

tag: homab

tag: matsuda

tag: dmcure

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):1248.045

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):870.045

value: change in insulin from 0 to 30 min (mcU/ml):10.642

value: change in glucose from 0 to 30 min (mg/dl):29

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.3669655

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.116497


title: wild-type_infected_T30d_rep5

tag: genotype

value: Wild-type

tag: cutivar

value: Micro-Tom

tag: treatment

value: Infected

tag: time


title: A34_3802

city: Gainesville

first: Thomas

middle: C

last: Foster

state: Florida

address: 1149 S. Newell Dr.

department: Neuroscience

institute: University of Florida

library_source: genomic

data_processing:
Input data sets were read in fastq format followed by short reads trimming using trimmomatic and quality control by FastQC and multiQC.
Reads were filtered using CSCALL to remove reads containing more than 10000 or more than 5.0% 'lone' cytosines.
Alignment of the input reads to the rn6 reference genome was done using BSMAP.
Methylation calling was performed with cscall v1.0  (Riva 2016) using the rn6-CG index.
Differential methylation was determined using the mcomp program.
Genome_build: rn6
Supplementary_files_format_and_content: comma separated values files which contains the methylation ratio for each sample.

molecule: genomic DNA

source_name: Brain hippocampal tissue

extract_protocol:
Animals were euthanized 6 hours after the last (E2/oil) injection and the brain CA1 region was dissected from dorsal hippocampi. The collected tissue was flash frozen in liquid nitrogen and stored in -80ᵒC. Genomic DNA was isolated using standard protocol involving SDS - Proteinase K treatment. Bisulfite conversion was performed with the EZ DNA Methylation-Direct kit (Zymo Research, catalog number: D5020).
Whole-genome bisulfite sequencing (WGBS) libraries for some samples were constructed with the Illumina TruSeq DNA Methylation kit (Illumina, catalog number: EGMK91324) and due to product discontinuation remaining libraries were made with NEBNext® Ultra™ II DNA Library Prep Kit for Illumina® (Cat No. E7645S) according to manufacturer’s instructions.

treatment_protocol: Injections of 17β-estradiol-3-benzoate (10µg) or oil as control were given 6 weeks after OVX for two consecutive days 24 hours apart.

tag: strain

value: Fisher 344

value: E2 Treatment

tag: age

value: Aged

tag: tissue

value: Brain hippocampal tissue


title: 963303

value: breast cancer

tag: hr

tag: mp

tag: pcr

tag: arm

value: Control Arm


title: wild-type_infected_T30d_rep4


title: 35S::AtCKX2_infected_T12h_rep3


title: 35S::AtCKX2_infected_T12h_rep2


title: 35S::AtCKX2_infected_T12h_rep1


title: wild-type_infected_T30d_rep3


title: plasma_DWM_0mo_LASSO

value: plasma

tag: acrostic

value: LASSO

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):297

value: meal tolerance test glucose time 15 min (mg/dl):314

value: meal tolerance test glucose time 30 min (mg/dl):345

value: meal tolerance test glucose time 60 min (mg/dl):370

value: meal tolerance test glucose time 120 min (mg/dl):351

value: meal tolerance test insulin time 0 min (mcU/ml):9.04500007629395

value: meal tolerance test insulin time 15 min (mcU/ml):10.3290004730225

value: meal tolerance test insulin time 30 min (mcU/ml):8.61400032043457

value: meal tolerance test insulin time 60 min (mcU/ml):8.10900020599365

value: meal tolerance test insulin time 120 min (mcU/ml):13.5920000076294

tag: homair

tag: homab

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):1189.253

value: insulin incremental area under curve (mcU/ml · 120 min):103.8525

value: change in insulin from 0 to 30 min (mcU/ml):-0.4309998

value: change in glucose from 0 to 30 min (mg/dl):48

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):-0.0089792

value: oral disposition index = dinsg030 / mttins0:-0.0009927


title: plasma_DWM_12mo_INTRO

tag: tissue

value: plasma

tag: acrostic

value: INTRO

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

value: meal tolerance test glucose time 0 min (mg/dl):222

value: meal tolerance test glucose time 15 min (mg/dl):230

value: meal tolerance test glucose time 30 min (mg/dl):261

value: meal tolerance test glucose time 60 min (mg/dl):284

value: meal tolerance test glucose time 120 min (mg/dl):317

value: meal tolerance test insulin time 0 min (mcU/ml):6.59499979019165

value: meal tolerance test insulin time 15 min (mcU/ml):15.9630002975464

value: meal tolerance test insulin time 30 min (mcU/ml):16.2320003509521

value: meal tolerance test insulin time 60 min (mcU/ml):12.0089998245239

value: meal tolerance test insulin time 120 min (mcU/ml):16.2320003509521

tag: matsuda

tag: dmcure

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):1681.493

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):890.0925

value: change in insulin from 0 to 30 min (mcU/ml):9.637001

value: change in glucose from 0 to 30 min (mg/dl):39

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.2471026

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0374682


title: wild-type_infected_T30d_rep2

tag: genotype

value: Wild-type

tag: cutivar

value: Micro-Tom

tag: treatment

value: Infected

tag: time


title: plasma_DWM_36mo_JUROR

tag: tissue

value: plasma

tag: acrostic

value: JUROR

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0


title: 929391

tag: tissue

value: breast cancer

tag: hr

tag: mp

tag: pcr

tag: arm

value: Control Arm


title: plasma_DWM_3mo_TOPAZ

tag: acrostic

value: TOPAZ

tag: group

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

value: meal tolerance test glucose time 0 min (mg/dl):171

value: meal tolerance test glucose time 15 min (mg/dl):183

value: meal tolerance test glucose time 30 min (mg/dl):213

value: meal tolerance test glucose time 60 min (mg/dl):216

value: meal tolerance test glucose time 120 min (mg/dl):239

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 30 min (mcU/ml):13.7919998168945

value: meal tolerance test insulin time 60 min (mcU/ml):3.33400011062622

value: meal tolerance test insulin time 120 min (mcU/ml):4.45499992370605

tag: homair

tag: homab

value: HOMA-B cell (%):10.5

tag: matsuda

tag: dmcure

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):664.875

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):286.875

value: change in insulin from 0 to 30 min (mcU/ml):10.642

value: change in glucose from 0 to 30 min (mg/dl):42

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.253381

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0804384


title: 938719

tag: tissue

value: breast cancer

tag: hr

tag: mp

tag: pcr

tag: arm

value: Control Arm


title: A14_3507

tag: strain

value: Fisher 344

tag: treatment

value: E2 Treatment

tag: age

value: Aged

value: Brain hippocampal tissue


title: A17_3512


title: wild-type_infected_T30d_rep1

tag: genotype

value: Wild-type

tag: cutivar

value: Micro-Tom

value: Infected

tag: time


title: wild-type_mock_T30d_rep5

value: Mock


title: A12_3505


title: wild-type_mock_T30d_rep4


title: P_T2W, biological rep3

value: Heart

tag: background strain

value: Ppara deltaCM


title: A33_3801


title: A13_3506


title: A35_3804

value: No treatment


title: wild-type_mock_T30d_rep3


title: plasma_DWM_3mo_FILMS

value: plasma

tag: acrostic

value: FILMS

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):97

value: meal tolerance test glucose time 15 min (mg/dl):102

value: meal tolerance test glucose time 30 min (mg/dl):133

value: meal tolerance test glucose time 60 min (mg/dl):176

value: meal tolerance test glucose time 120 min (mg/dl):144

value: meal tolerance test insulin time 0 min (mcU/ml):10.8620004653931

value: meal tolerance test insulin time 15 min (mcU/ml):20.6909999847412

value: meal tolerance test insulin time 30 min (mcU/ml):43.8079986572266

value: meal tolerance test insulin time 60 min (mcU/ml):28.2689990997314

value: meal tolerance test insulin time 120 min (mcU/ml):30.3680000305176

tag: homair

tag: homab

tag: matsuda

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

value: insulin total area under curve (mcU/ml · 120 min):3560.655

value: insulin incremental area under curve (mcU/ml · 120 min):2257.215

value: change in insulin from 0 to 30 min (mcU/ml):32.946

value: change in glucose from 0 to 30 min (mg/dl):36

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.9151666

value: oral disposition index = dinsg030 / mttins0:0.084254


title: plasma_RYGB_0mo_HUMOR

tag: tissue

value: plasma

tag: acrostic

value: HUMOR

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

value: meal tolerance test glucose time 0 min (mg/dl):60

value: meal tolerance test glucose time 15 min (mg/dl):95

value: meal tolerance test glucose time 30 min (mg/dl):122

value: meal tolerance test glucose time 60 min (mg/dl):135

value: meal tolerance test glucose time 120 min (mg/dl):93

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):30.6060009002686

value: meal tolerance test insulin time 30 min (mcU/ml):6.22800016403198

value: meal tolerance test insulin time 60 min (mcU/ml):23.6499996185303

value: meal tolerance test insulin time 120 min (mcU/ml):4.87799978256226

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):1833.435

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1455.435

value: change in insulin from 0 to 30 min (mcU/ml):3.078

value: change in glucose from 0 to 30 min (mg/dl):62

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.0496452

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0157604


title: plasma_DWM_3mo_WALTZ

tag: tissue

value: plasma

tag: acrostic

value: WALTZ

value: DWM

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):137

value: meal tolerance test glucose time 15 min (mg/dl):143

value: meal tolerance test glucose time 30 min (mg/dl):199

value: meal tolerance test glucose time 60 min (mg/dl):250

value: meal tolerance test glucose time 120 min (mg/dl):250

value: meal tolerance test insulin time 0 min (mcU/ml):3.78500008583069

value: meal tolerance test insulin time 15 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 30 min (mcU/ml):9.57100009918213

value: meal tolerance test insulin time 60 min (mcU/ml):4.33599996566772

value: meal tolerance test insulin time 120 min (mcU/ml):11.1709995269775

tag: homair

tag: homab

tag: matsuda

value: insulin total area under curve (mcU/ml · 120 min):821.235

value: insulin incremental area under curve (mcU/ml · 120 min):367.035

value: change in insulin from 0 to 30 min (mcU/ml):5.786

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.0933226

value: oral disposition index = dinsg030 / mttins0:0.0246559


title: A30_3797

tag: strain

value: Fisher 344

tag: treatment

value: E2 Treatment

tag: age

value: Aged

tag: tissue

value: Brain hippocampal tissue


title: plasma_RYGB_12mo_VIDEO

value: plasma

tag: acrostic

value: VIDEO

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

value: meal tolerance test glucose time 0 min (mg/dl):65

value: meal tolerance test glucose time 15 min (mg/dl):133

value: meal tolerance test glucose time 30 min (mg/dl):129

value: meal tolerance test glucose time 60 min (mg/dl):110

value: meal tolerance test glucose time 120 min (mg/dl):75

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):78.2470016479492

value: meal tolerance test insulin time 30 min (mcU/ml):62.1980018615723

value: meal tolerance test insulin time 60 min (mcU/ml):14.5459995269775

value: meal tolerance test insulin time 120 min (mcU/ml):3.15000009536743

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):3345.855

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):2967.855

value: change in insulin from 0 to 30 min (mcU/ml):59.048

value: change in glucose from 0 to 30 min (mg/dl):64

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.922625

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.2928968


title: A31_3799

tag: strain

value: Fisher 344

tag: treatment

value: No treatment

tag: age

value: Aged

tag: tissue

value: Brain hippocampal tissue


title: plasma_RYGB_36mo_IMAGE

value: plasma

tag: acrostic

value: IMAGE

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)


title: A15_3509

tag: strain

tag: treatment

tag: age

tag: tissue


title: wild-type_infected_T20d_rep5

tag: genotype

value: Wild-type

tag: cutivar

value: Micro-Tom

value: Infected

tag: time


title: wild-type_mock_T30d_rep1

value: Mock


title: plasma_RYGB_3mo_RELIC

tag: acrostic

value: RELIC

tag: group

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

value: meal tolerance test glucose time 0 min (mg/dl):91

value: meal tolerance test glucose time 15 min (mg/dl):180

value: meal tolerance test glucose time 30 min (mg/dl):186

value: meal tolerance test glucose time 60 min (mg/dl):128

value: meal tolerance test glucose time 120 min (mg/dl):92

value: meal tolerance test insulin time 0 min (mcU/ml):3.63199996948242

value: meal tolerance test insulin time 15 min (mcU/ml):33.3349990844727

value: meal tolerance test insulin time 30 min (mcU/ml):76.0230026245117

value: meal tolerance test insulin time 60 min (mcU/ml):31.2929992675781

value: meal tolerance test insulin time 120 min (mcU/ml):3.15000009536743

tag: homair

tag: homab

tag: matsuda

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):3740.468

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):3304.627

value: change in insulin from 0 to 30 min (mcU/ml):72.39101

value: change in glucose from 0 to 30 min (mg/dl):95

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.7620106

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.2098047


title: A28_3795

tag: strain

value: Fisher 344

tag: treatment

value: E2 Treatment

tag: age

value: Middle

tag: tissue

value: Brain hippocampal tissue


title: plasma_RYGB_36mo_REMIX

value: plasma

tag: acrostic

value: REMIX

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1


title: A26_3793

tag: strain

tag: treatment

tag: age

tag: tissue


title: A27_3794


title: wild-type_infected_T20d_rep3

tag: genotype

value: Wild-type

tag: cutivar

value: Micro-Tom

value: Infected

tag: time


title: plasma_DWM_3mo_FOGGY

tag: acrostic

value: FOGGY

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

value: meal tolerance test glucose time 0 min (mg/dl):84

value: meal tolerance test glucose time 15 min (mg/dl):98

value: meal tolerance test glucose time 30 min (mg/dl):121

value: meal tolerance test glucose time 60 min (mg/dl):129

value: meal tolerance test glucose time 120 min (mg/dl):119

value: meal tolerance test insulin time 0 min (mcU/ml):11.3229999542236

value: meal tolerance test insulin time 15 min (mcU/ml):31.0330009460449

value: meal tolerance test insulin time 30 min (mcU/ml):50.5940017700195

value: meal tolerance test insulin time 60 min (mcU/ml):48.2019996643066

value: meal tolerance test insulin time 120 min (mcU/ml):40.734001159668

tag: homair

tag: homab

tag: matsuda

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):5079.893

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):3721.133

value: change in insulin from 0 to 30 min (mcU/ml):39.271

value: change in glucose from 0 to 30 min (mg/dl):37

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):1.061378

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0937365


title: A32_3800

tag: strain

value: Fisher 344

tag: treatment

value: No treatment

tag: age

value: Aged

tag: tissue

value: Brain hippocampal tissue


title: A25_3792

value: E2 Treatment

value: Middle


title: wild-type_infected_T20d_rep1

tag: genotype

value: Wild-type

tag: cutivar

value: Micro-Tom

value: Infected

tag: time


title: wild-type_infected_T20d_rep2


title: plasma_RYGB_36mo_VENUE

value: plasma

tag: acrostic

value: VENUE

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)


title: wild-type_mock_T30d_rep2

tag: genotype

tag: cutivar

tag: treatment

value: Mock

tag: time


title: plasma_DWM_3mo_LASSO

tag: tissue

tag: acrostic

value: LASSO

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

value: meal tolerance test glucose time 0 min (mg/dl):216

value: meal tolerance test glucose time 15 min (mg/dl):235

value: meal tolerance test glucose time 30 min (mg/dl):271

value: meal tolerance test glucose time 60 min (mg/dl):289

value: meal tolerance test glucose time 120 min (mg/dl):259

value: meal tolerance test insulin time 0 min (mcU/ml):9.61800003051758

value: meal tolerance test insulin time 15 min (mcU/ml):11.7320003509521

value: meal tolerance test insulin time 30 min (mcU/ml):24.5310001373291

value: meal tolerance test insulin time 60 min (mcU/ml):20.4139995574951

value: meal tolerance test insulin time 120 min (mcU/ml):13.3870000839233

tag: homair

tag: homab

tag: matsuda

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2120.302

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):966.1425

value: change in insulin from 0 to 30 min (mcU/ml):14.913

value: change in glucose from 0 to 30 min (mg/dl):55

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.2711455

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0281915


title: A11_3504

tag: strain

value: Fisher 344

tag: treatment

value: E2 Treatment

tag: age

value: Middle

tag: tissue

value: Brain hippocampal tissue


title: wild-type_mock_T20d_rep4

tag: genotype

value: Wild-type

tag: cutivar

value: Micro-Tom

value: Mock

tag: time


title: plasma_DWM_12mo_JUROR

value: plasma

tag: acrostic

value: JUROR

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):89

value: meal tolerance test glucose time 15 min (mg/dl):85

value: meal tolerance test glucose time 30 min (mg/dl):102

value: meal tolerance test glucose time 60 min (mg/dl):160

value: meal tolerance test glucose time 120 min (mg/dl):123

value: meal tolerance test insulin time 0 min (mcU/ml):21.2369995117188

value: meal tolerance test insulin time 15 min (mcU/ml):3.24499988555908

value: meal tolerance test insulin time 30 min (mcU/ml):47.5639991760254

value: meal tolerance test insulin time 60 min (mcU/ml):92.6660003662109

value: meal tolerance test insulin time 120 min (mcU/ml):119.591003417969

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

value: insulin total area under curve (mcU/ml · 120 min):9035.843

value: insulin incremental area under curve (mcU/ml · 120 min):6487.403

value: change in insulin from 0 to 30 min (mcU/ml):26.327

value: change in glucose from 0 to 30 min (mg/dl):13

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):2.025154

value: oral disposition index = dinsg030 / mttins0:0.0953597


title: plasma_DWM_36mo_IVORY

tag: tissue

value: plasma

tag: acrostic

value: IVORY

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0


title: wild-type_mock_T20d_rep5

tag: genotype

value: Wild-type

tag: cutivar

value: Micro-Tom

tag: treatment

value: Mock

tag: time


title: A7_3499

tag: strain

value: Fisher 344

value: E2 Treatment

tag: age

value: Middle

value: Brain hippocampal tissue


title: A23_3790

value: No treatment

tag: tissue


title: wild-type_infected_T20d_rep4

value: Infected


title: wild-type_mock_T20d_rep3


title: A22_3789


title: plasma_RYGB_24mo_LILAC

tag: acrostic

value: LILAC

tag: group

value: RYGB

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1


title: wild-type_mock_T20d_rep2

tag: genotype

tag: cutivar

tag: treatment

tag: time


title: wild-type_mock_T20d_rep1


title: plasma_RYGB_36mo_MAGIC

tag: tissue

tag: acrostic

value: MAGIC

tag: group

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: dmcure


title: plasma_RYGB_12mo_RELIC

value: plasma

value: RELIC

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: alt (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):97

value: meal tolerance test glucose time 15 min (mg/dl):189

value: meal tolerance test glucose time 30 min (mg/dl):164

value: meal tolerance test glucose time 60 min (mg/dl):132

value: meal tolerance test glucose time 120 min (mg/dl):103

value: meal tolerance test insulin time 0 min (mcU/ml):5.1560001373291

value: meal tolerance test insulin time 15 min (mcU/ml):17.3689994812012

value: meal tolerance test insulin time 30 min (mcU/ml):23.3969993591309

value: meal tolerance test insulin time 60 min (mcU/ml):14.7650003433228

value: meal tolerance test insulin time 120 min (mcU/ml):4.72700023651123

tag: homair

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):1631.873

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1013.152

value: change in insulin from 0 to 30 min (mcU/ml):18.241

value: change in glucose from 0 to 30 min (mg/dl):67

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.2722537

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0528033


title: wild-type_infected_T10d_rep5

tag: genotype

value: Wild-type

tag: cutivar

value: Micro-Tom

tag: treatment

value: Infected

tag: time


title: A9_3501

tag: strain

value: Fisher 344

value: No treatment

tag: age

value: Middle

tag: tissue

value: Brain hippocampal tissue


title: A10_3502


title: A19_3786

value: E2 Treatment

value: Young


title: wild-type_infected_T10d_rep4


title: 879224

value: breast cancer

tag: hr

tag: mp

tag: pcr

tag: arm

value: Control Arm


title: plasma_RYGB_3mo_FLAGS

value: plasma

tag: acrostic

value: FLAGS

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):94

value: meal tolerance test glucose time 15 min (mg/dl):167

value: meal tolerance test glucose time 30 min (mg/dl):181

value: meal tolerance test glucose time 60 min (mg/dl):175

value: meal tolerance test glucose time 120 min (mg/dl):88

value: meal tolerance test insulin time 0 min (mcU/ml):6.46400022506714

value: meal tolerance test insulin time 15 min (mcU/ml):84.0189971923828

value: meal tolerance test insulin time 30 min (mcU/ml):132.613006591797

value: meal tolerance test insulin time 60 min (mcU/ml):175.110000610352

value: meal tolerance test insulin time 120 min (mcU/ml):16.875

tag: homair

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

value: insulin total area under curve (mcU/ml · 120 min):12678.76

value: insulin incremental area under curve (mcU/ml · 120 min):11903.08

value: change in insulin from 0 to 30 min (mcU/ml):126.149

value: change in glucose from 0 to 30 min (mg/dl):87

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):1.449989

value: oral disposition index = dinsg030 / mttins0:0.2243175


title: A18_3785

tag: strain

value: Fisher 344

tag: treatment

value: E2 Treatment

tag: age

value: Young

tag: tissue

value: Brain hippocampal tissue


title: plasma_DWM_12mo_POETS

value: plasma

tag: acrostic

value: POETS

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

value: meal tolerance test glucose time 0 min (mg/dl):131

value: meal tolerance test glucose time 15 min (mg/dl):134

value: meal tolerance test glucose time 30 min (mg/dl):167

value: meal tolerance test glucose time 60 min (mg/dl):228

value: meal tolerance test glucose time 120 min (mg/dl):199

value: meal tolerance test insulin time 0 min (mcU/ml):6.99100017547607

value: meal tolerance test insulin time 15 min (mcU/ml):9.02200031280518

value: meal tolerance test insulin time 30 min (mcU/ml):19.2649993896484

value: meal tolerance test insulin time 60 min (mcU/ml):30.2490005493164

value: meal tolerance test insulin time 120 min (mcU/ml):30.0100002288818

tag: homab

tag: matsuda

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2882.73

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):2043.81

value: change in insulin from 0 to 30 min (mcU/ml):12.274

value: change in glucose from 0 to 30 min (mg/dl):36

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.3409444

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.048769


title: A2_3494

tag: strain

value: Fisher 344

tag: treatment

value: E2 Treatment

tag: age

value: Young

tag: tissue

value: Brain hippocampal tissue


title: 885871

value: breast cancer

tag: hr

tag: mp

tag: pcr

tag: arm

value: Control Arm


title: plasma_RYGB_0mo_PATCH

value: plasma

tag: acrostic

value: PATCH

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):154

value: meal tolerance test glucose time 15 min (mg/dl):140

value: meal tolerance test glucose time 30 min (mg/dl):183

value: meal tolerance test glucose time 60 min (mg/dl):193

value: meal tolerance test glucose time 120 min (mg/dl):190

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):14.2180004119873

value: meal tolerance test insulin time 30 min (mcU/ml):22.7269992828369

value: meal tolerance test insulin time 60 min (mcU/ml):18.8299999237061

value: meal tolerance test insulin time 120 min (mcU/ml):16.2770004272461

tag: homair

tag: dmcure

value: insulin total area under curve (mcU/ml · 120 min):2083.913

value: insulin incremental area under curve (mcU/ml · 120 min):1705.912

value: change in insulin from 0 to 30 min (mcU/ml):19.577

value: change in glucose from 0 to 30 min (mg/dl):29

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.675069

value: oral disposition index = dinsg030 / mttins0:0.2143076


title: plasma_RYGB_12mo_VENUE

tag: tissue

value: plasma

tag: acrostic

value: VENUE

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: ast (iu/l)

value: meal tolerance test glucose time 0 min (mg/dl):78

value: meal tolerance test glucose time 15 min (mg/dl):171

value: meal tolerance test glucose time 30 min (mg/dl):197

value: meal tolerance test glucose time 60 min (mg/dl):181

value: meal tolerance test glucose time 120 min (mg/dl):144

value: meal tolerance test insulin time 15 min (mcU/ml):7.94000005722046

value: meal tolerance test insulin time 30 min (mcU/ml):6.73199987411499

value: meal tolerance test insulin time 60 min (mcU/ml):6.53000020980835

value: meal tolerance test insulin time 120 min (mcU/ml):10.2069997787476

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: change in glucose from 0 to 30 min (mg/dl):119


title: wild-type_infected_T10d_rep2

tag: genotype

value: Wild-type

tag: cutivar

value: Micro-Tom

tag: treatment

value: Infected

tag: time


title: wild-type_infected_T10d_rep1


title: plasma_DWM_0mo_EAGLE

tag: tissue

value: plasma

value: EAGLE

value: DWM

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):231

value: meal tolerance test glucose time 15 min (mg/dl):264

value: meal tolerance test glucose time 30 min (mg/dl):271

value: meal tolerance test glucose time 60 min (mg/dl):299

value: meal tolerance test glucose time 120 min (mg/dl):309

value: meal tolerance test insulin time 0 min (mcU/ml):8.05099964141846

value: meal tolerance test insulin time 15 min (mcU/ml):12.8819999694824

value: meal tolerance test insulin time 30 min (mcU/ml):13.496000289917

value: meal tolerance test insulin time 60 min (mcU/ml):16.1870002746582

value: meal tolerance test insulin time 120 min (mcU/ml):16.2740001678467

tag: homair

tag: homab

tag: matsuda

tag: dmcure

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):1773.907

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):807.7875

value: change in insulin from 0 to 30 min (mcU/ml):5.445001

value: change in glucose from 0 to 30 min (mg/dl):40

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.136125

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0169078


title: A3_3495

tag: strain

value: Fisher 344

tag: treatment

value: E2 Treatment

tag: age

value: Young

tag: tissue

value: Brain hippocampal tissue


title: plasma_RYGB_12mo_HUMOR

value: plasma

tag: acrostic

value: HUMOR

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

value: meal tolerance test glucose time 0 min (mg/dl):91

value: meal tolerance test glucose time 15 min (mg/dl):216

value: meal tolerance test glucose time 30 min (mg/dl):263

value: meal tolerance test glucose time 60 min (mg/dl):215

value: meal tolerance test glucose time 120 min (mg/dl):129

value: meal tolerance test insulin time 0 min (mcU/ml):5.76599979400635

value: meal tolerance test insulin time 15 min (mcU/ml):62.9280014038086

value: meal tolerance test insulin time 30 min (mcU/ml):64.5500030517578

value: meal tolerance test insulin time 60 min (mcU/ml):35.3450012207031

value: meal tolerance test insulin time 120 min (mcU/ml):15.7270002365112

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

value: insulin total area under curve (mcU/ml · 120 min):4501.875

value: insulin incremental area under curve (mcU/ml · 120 min):3809.955

value: change in insulin from 0 to 30 min (mcU/ml):58.784

value: change in glucose from 0 to 30 min (mg/dl):172

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.3417675

value: oral disposition index = dinsg030 / mttins0:0.0592729


title: wild-type_mock_T10d_rep5

tag: genotype

value: Wild-type

tag: cutivar

value: Micro-Tom

tag: treatment

value: Mock

tag: time


title: A1_3493

tag: strain

value: Fisher 344

value: E2 Treatment

tag: age

value: Young

tag: tissue

value: Brain hippocampal tissue


title: wild-type_mock_T10d_rep4


title: plasma_RYGB_36mo_RELIC

value: plasma

tag: acrostic

value: RELIC

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure


title: A21_3788

tag: strain

tag: treatment

value: No treatment

tag: age

tag: tissue