title: plasma_DWM_12mo_GLASS

tag: tissue

value: plasma

value: GLASS

value: DWM

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):164

value: meal tolerance test glucose time 15 min (mg/dl):183

value: meal tolerance test glucose time 30 min (mg/dl):224

value: meal tolerance test glucose time 60 min (mg/dl):230

value: meal tolerance test glucose time 120 min (mg/dl):239

value: meal tolerance test insulin time 0 min (mcU/ml):7.73299980163574

value: meal tolerance test insulin time 15 min (mcU/ml):23.1690006256104

value: meal tolerance test insulin time 30 min (mcU/ml):49.3860015869141

value: meal tolerance test insulin time 60 min (mcU/ml):17.1639995574951

value: meal tolerance test insulin time 120 min (mcU/ml):16.8439998626709

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):2794.417

value: insulin incremental area under curve (mcU/ml · 120 min):1866.458

value: change in insulin from 0 to 30 min (mcU/ml):41.653

value: change in glucose from 0 to 30 min (mg/dl):60

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.6942167

value: oral disposition index = dinsg030 / mttins0:0.0897733


title: plasma_RYGB_12mo_FLAGS

status: Public on Aug 24 2021

type: protein

city: Boston

first: Jonathan

middle: M

last: Dreyfuss

state: MA

address: 1 Joslin Pl

department: Bioinformatics & Biostatistics Core

country: USA

institute: Joslin Diabetes Center

hyb_protocol: Hybridized by SomaLogic (http://somalogic.com/wp-content/uploads/2017/06/SSM-002-Technical-White-Paper_010916_LSM1.pdf)

scan_protocol: Scanned by SomaLogic (http://somalogic.com/wp-content/uploads/2017/06/SSM-002-Technical-White-Paper_010916_LSM1.pdf)

data_processing: Hybridization Control Normalization, Median Signal Normalization, and Calibration by SomaLogic.  The Relative fluorescence units provided in the sample data tables are the processed data provided by SomaLogic and these values were used to draw the conclusions for the study. Raw data were not provided by SomaLogic.

label: biotin

molecule: protein

organism: Homo sapiens

source_name: plasma

label_protocol: Biotin labeled by SomaLogic (http://somalogic.com/wp-content/uploads/2017/06/SSM-002-Technical-White-Paper_010916_LSM1.pdf)

extract_protocol: Extracted from plasma by SomaLogic (http://somalogic.com/wp-content/uploads/2017/06/SSM-002-Technical-White-Paper_010916_LSM1.pdf)

tag: tissue

value: plasma

tag: acrostic

value: FLAGS

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: basal metabolic rate

tag: body fat (%)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):173

value: meal tolerance test glucose time 15 min (mg/dl):152

value: meal tolerance test glucose time 30 min (mg/dl):96

value: meal tolerance test glucose time 60 min (mg/dl):200

value: meal tolerance test glucose time 120 min (mg/dl):93

value: meal tolerance test insulin time 0 min (mcU/ml):4.30100011825562

value: meal tolerance test insulin time 15 min (mcU/ml):153.311004638672

value: meal tolerance test insulin time 30 min (mcU/ml):193.210006713867

value: meal tolerance test insulin time 60 min (mcU/ml):78.3199996948242

value: meal tolerance test insulin time 120 min (mcU/ml):10.8280000686646

tag: homair

tag: homab

tag: matsuda

tag: dmcure

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):10528.39

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):10012.27

value: change in insulin from 0 to 30 min (mcU/ml):188.909

value: change in glucose from 0 to 30 min (mg/dl):-77

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):-2.453364

tag: odi

value: oral disposition index = dinsg030 / mttins0:-0.570417


title: plasma_DWM_24mo_RODEO

tag: tissue

value: plasma

tag: acrostic

value: RODEO

value: DWM

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0


title: plasma_DWM_0mo_FOGGY

tag: tissue

tag: acrostic

value: FOGGY

tag: group

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: basal metabolic rate

tag: body fat (%)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):158

value: meal tolerance test glucose time 15 min (mg/dl):179

value: meal tolerance test glucose time 30 min (mg/dl):197

value: meal tolerance test glucose time 60 min (mg/dl):203

value: meal tolerance test glucose time 120 min (mg/dl):189

value: meal tolerance test insulin time 0 min (mcU/ml):14.1780004501343

value: meal tolerance test insulin time 15 min (mcU/ml):45.0330009460449

value: meal tolerance test insulin time 30 min (mcU/ml):37.1940002441406

value: meal tolerance test insulin time 60 min (mcU/ml):39.6419982910156

value: meal tolerance test insulin time 120 min (mcU/ml):23.6499996185303

tag: homair

tag: homab

tag: matsuda

tag: dmcure

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):4112.085

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):2410.725

value: change in insulin from 0 to 30 min (mcU/ml):23.016

value: change in glucose from 0 to 30 min (mg/dl):39

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.5901538

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0416246


title: plasma_RYGB_3mo_LAKES

tag: tissue

value: plasma

tag: acrostic

value: LAKES

value: RYGB

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):108

value: meal tolerance test glucose time 15 min (mg/dl):183

value: meal tolerance test glucose time 30 min (mg/dl):169

value: meal tolerance test glucose time 60 min (mg/dl):153

value: meal tolerance test glucose time 120 min (mg/dl):129

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):36.9539985656738

value: meal tolerance test insulin time 30 min (mcU/ml):19.1119995117188

value: meal tolerance test insulin time 60 min (mcU/ml):5.61399984359741

value: meal tolerance test insulin time 120 min (mcU/ml):4.2480001449585

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):1388.025

value: insulin incremental area under curve (mcU/ml · 120 min):1010.025

value: change in insulin from 0 to 30 min (mcU/ml):15.962

value: change in glucose from 0 to 30 min (mg/dl):61

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.2616721

value: oral disposition index = dinsg030 / mttins0:0.0830705


title: plasma_RYGB_0mo_SHAWL

tag: tissue

value: plasma

value: SHAWL

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: serum creatinine (mg/dl)

tag: basal metabolic rate

tag: body fat (%)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):68

value: meal tolerance test glucose time 15 min (mg/dl):107

value: meal tolerance test glucose time 30 min (mg/dl):151

value: meal tolerance test glucose time 60 min (mg/dl):176

value: meal tolerance test glucose time 120 min (mg/dl):127

value: meal tolerance test insulin time 0 min (mcU/ml):5.30200004577637

value: meal tolerance test insulin time 15 min (mcU/ml):19.5580005645752

value: meal tolerance test insulin time 30 min (mcU/ml):31.9829998016357

value: meal tolerance test insulin time 60 min (mcU/ml):29.298999786377

value: meal tolerance test insulin time 120 min (mcU/ml):19.1590003967285

tag: homair

tag: homab

tag: matsuda

tag: dmcure

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2945.978

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):2309.738

value: change in insulin from 0 to 30 min (mcU/ml):26.681

value: change in glucose from 0 to 30 min (mg/dl):83

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.3214578

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0606295


title: Pdgfc-/- mouse with irradation, biological rep2

type: RNA

city: Guangzhou

first: Lekun

last: Fang

address: Yuancunerheng Road

country: China

institute: Sun Yat-sen University

description: Gene expression data from distal colorectal tissue of Pdgfc-/- mouse with irradation

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.

molecule: total RNA

organism: Mus musculus

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA according to the manufacturer’s instructions of GeneChip® (Affymetrix, Santa Clara, CA, US).

growth_protocol: All mice were housed under temperature-controlled condition with a 12-hour light/dark cycle in an SPF environment.

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: Mice were anesthetized by peritoneal injection with 5 % chloral hydrate and subjected to 25 Gy (2.14 Gy/min) local γ-irradiation. Eight weeks after radiation, the control and radiation groups were sacrificed and the colo-rectums about 1 cm above anus were separated for the following steps.

tag: tissue

value: distal colorectum

tag: strain

tag: genotype

value: Pdgfc-/-

tag: treatment

value: irradation


title: plasma_DWM_12mo_FOGGY

value: plasma

tag: acrostic

value: FOGGY

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):173

value: meal tolerance test glucose time 15 min (mg/dl):209

value: meal tolerance test glucose time 30 min (mg/dl):229

value: meal tolerance test glucose time 60 min (mg/dl):253

value: meal tolerance test glucose time 120 min (mg/dl):236

value: meal tolerance test insulin time 0 min (mcU/ml):14.2740001678467

value: meal tolerance test insulin time 15 min (mcU/ml):22.4389991760254

value: meal tolerance test insulin time 30 min (mcU/ml):34.7760009765625

value: meal tolerance test insulin time 60 min (mcU/ml):34.7760009765625

value: meal tolerance test insulin time 120 min (mcU/ml):32.9659996032715

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):3780

value: insulin incremental area under curve (mcU/ml · 120 min):2067.12

value: change in insulin from 0 to 30 min (mcU/ml):20.502

value: change in glucose from 0 to 30 min (mg/dl):56

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.3661072

value: oral disposition index = dinsg030 / mttins0:0.0256485


title: Pdgfc-/- mouse with irradation, biological rep3

source_name: distal colorectal tissue of Pdgfc-/- mouse with irradation

tag: tissue

value: distal colorectum

tag: strain

tag: genotype

value: Pdgfc-/-

tag: treatment

value: irradation


title: Pdgfc+/+ mouse without irradation, biological rep2

description: Gene expression data from distal colorectal tissue of Pdgfc+/+ mouse without irradiation

source_name: distal colorectal tissue of Pdgfc+/+ mouse without irradation

value: Pdgfc+/+


title: plasma_DWM_12mo_TANGO

value: plasma

tag: acrostic

value: TANGO

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: basal metabolic rate

tag: body fat (%)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):92

value: meal tolerance test glucose time 15 min (mg/dl):99

value: meal tolerance test glucose time 30 min (mg/dl):131

value: meal tolerance test glucose time 60 min (mg/dl):168

value: meal tolerance test glucose time 120 min (mg/dl):143

value: meal tolerance test insulin time 0 min (mcU/ml):4.55000019073486

value: meal tolerance test insulin time 15 min (mcU/ml):9.11900043487549

value: meal tolerance test insulin time 30 min (mcU/ml):25.4699993133545

value: meal tolerance test insulin time 60 min (mcU/ml):27.0429992675781

value: meal tolerance test insulin time 120 min (mcU/ml):16.3920001983643

tag: homair

tag: homab

tag: matsuda

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2452.68

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1906.68

value: change in insulin from 0 to 30 min (mcU/ml):20.92

value: change in glucose from 0 to 30 min (mg/dl):39

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.5364102

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.1178923


title: plasma_RYGB_24mo_REMIX

tag: tissue

value: plasma

tag: acrostic

value: REMIX

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: weight (kg)

tag: bmi

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)


title: Pdgfc+/+ mouse without irradation, biological rep1

tag: tissue

value: distal colorectum

tag: strain

tag: genotype

value: Pdgfc+/+

tag: treatment


title: Pdgfc-/- mouse with irradation, biological rep1

value: Pdgfc-/-

value: irradation


title: plasma_RYGB_36mo_LILAC

tag: acrostic

value: LILAC

tag: group

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: basal metabolic rate

tag: body fat (%)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure


title: plasma_DWM_0mo_WALTZ

tag: tissue

value: WALTZ

value: DWM

tag: weight (kg)

tag: bmi

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):168

value: meal tolerance test glucose time 15 min (mg/dl):188

value: meal tolerance test glucose time 30 min (mg/dl):236

value: meal tolerance test glucose time 60 min (mg/dl):271

value: meal tolerance test glucose time 120 min (mg/dl):256

value: meal tolerance test insulin time 0 min (mcU/ml):5.18200016021729

value: meal tolerance test insulin time 15 min (mcU/ml):9.57100009918213

value: meal tolerance test insulin time 30 min (mcU/ml):12.1009998321533

value: meal tolerance test insulin time 60 min (mcU/ml):12.2250003814697

value: meal tolerance test insulin time 120 min (mcU/ml):12.53600025177

tag: homair

tag: homab

tag: matsuda

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):1380.907

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):759.0675

value: change in insulin from 0 to 30 min (mcU/ml):6.919

value: change in glucose from 0 to 30 min (mg/dl):68

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.10175

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0196353


title: Pdgfc-/- mouse without irradation, biological rep2

description: Gene expression data from distal colorectal tissue of Pdgfc-/- mouse without irradation

tag: tissue

value: distal colorectum

tag: strain

tag: genotype

value: Pdgfc-/-

tag: treatment


title: Pdgfc-/- mouse without irradation, biological rep1

source_name: distal colorectal tissue of Pdgfc-/- mouse without irradation


title: plasma_RYGB_12mo_REMIX

value: plasma

tag: acrostic

value: REMIX

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):92

value: meal tolerance test glucose time 15 min (mg/dl):172

value: meal tolerance test glucose time 30 min (mg/dl):214

value: meal tolerance test glucose time 60 min (mg/dl):186

value: meal tolerance test glucose time 120 min (mg/dl):110

value: meal tolerance test insulin time 0 min (mcU/ml):3.43899989128113

value: meal tolerance test insulin time 15 min (mcU/ml):14.0520000457764

value: meal tolerance test insulin time 30 min (mcU/ml):66.8929977416992

value: meal tolerance test insulin time 60 min (mcU/ml):48.1529998779297

value: meal tolerance test insulin time 120 min (mcU/ml):9.35299968719482

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

value: insulin total area under curve (mcU/ml · 120 min):4189.14

value: insulin incremental area under curve (mcU/ml · 120 min):3776.46

value: change in insulin from 0 to 30 min (mcU/ml):63.454

value: change in glucose from 0 to 30 min (mg/dl):122

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.5201147

value: oral disposition index = dinsg030 / mttins0:0.1512401


title: plasma_DWM_3mo_INTRO

tag: tissue

value: plasma

tag: acrostic

value: INTRO

tag: group

value: DWM

tag: height (cm)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):121

value: meal tolerance test glucose time 15 min (mg/dl):142

value: meal tolerance test glucose time 30 min (mg/dl):160

value: meal tolerance test glucose time 60 min (mg/dl):176

value: meal tolerance test glucose time 120 min (mg/dl):164

value: meal tolerance test insulin time 0 min (mcU/ml):4.5

value: meal tolerance test insulin time 15 min (mcU/ml):9.68900012969971

value: meal tolerance test insulin time 30 min (mcU/ml):24.2059993743896

value: meal tolerance test insulin time 60 min (mcU/ml):13.3870000839233

value: meal tolerance test insulin time 120 min (mcU/ml):14.0019998550415

tag: homair

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):1746.195

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1206.195

value: change in insulin from 0 to 30 min (mcU/ml):19.706

value: change in glucose from 0 to 30 min (mg/dl):39

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.505282

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.1122849


title: plasma_RYGB_3mo_HUMOR

tag: tissue

value: plasma

tag: acrostic

value: HUMOR

value: RYGB

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):86

value: meal tolerance test glucose time 15 min (mg/dl):190

value: meal tolerance test glucose time 30 min (mg/dl):235

value: meal tolerance test glucose time 60 min (mg/dl):197

value: meal tolerance test glucose time 120 min (mg/dl):120

value: meal tolerance test insulin time 0 min (mcU/ml):8.02099990844727

value: meal tolerance test insulin time 15 min (mcU/ml):67.2819976806641

value: meal tolerance test insulin time 30 min (mcU/ml):96.1849975585938

value: meal tolerance test insulin time 60 min (mcU/ml):54.8959999084473

value: meal tolerance test insulin time 120 min (mcU/ml):24.4810009002686

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

value: insulin total area under curve (mcU/ml · 120 min):6438.3

value: insulin incremental area under curve (mcU/ml · 120 min):5475.78

value: change in insulin from 0 to 30 min (mcU/ml):88.164

value: change in glucose from 0 to 30 min (mg/dl):149

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.5917047

value: oral disposition index = dinsg030 / mttins0:0.0737695


title: plasma_RYGB_12mo_MAGIC

value: plasma

value: MAGIC

tag: group

value: RYGB

tag: height (cm)

tag: albumin/creatinine ratio

tag: serum creatinine (mg/dl)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):121

value: meal tolerance test glucose time 15 min (mg/dl):210

value: meal tolerance test glucose time 30 min (mg/dl):197

value: meal tolerance test glucose time 60 min (mg/dl):170

value: meal tolerance test glucose time 120 min (mg/dl):139

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):69.5070037841797

value: meal tolerance test insulin time 30 min (mcU/ml):32.4550018310547

value: meal tolerance test insulin time 60 min (mcU/ml):9.10799980163574

value: meal tolerance test insulin time 120 min (mcU/ml):4.60900020599365

tag: homair

tag: homab

tag: matsuda

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2344.598

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1966.598

value: change in insulin from 0 to 30 min (mcU/ml):29.305

value: change in glucose from 0 to 30 min (mg/dl):76

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.3855921

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.1224102


title: plasma_DWM_12mo_DAISY

tag: tissue

value: plasma

tag: acrostic

value: DAISY

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):102

value: meal tolerance test glucose time 15 min (mg/dl):109

value: meal tolerance test glucose time 30 min (mg/dl):143

value: meal tolerance test glucose time 60 min (mg/dl):183

value: meal tolerance test glucose time 120 min (mg/dl):161

value: meal tolerance test insulin time 0 min (mcU/ml):5.98699998855591

value: meal tolerance test insulin time 15 min (mcU/ml):15.1499996185303

value: meal tolerance test insulin time 30 min (mcU/ml):30.5069999694824

value: meal tolerance test insulin time 60 min (mcU/ml):17.5629997253418

value: meal tolerance test insulin time 120 min (mcU/ml):13.1450004577637

tag: dmcure

value: insulin total area under curve (mcU/ml · 120 min):2143.245

value: insulin incremental area under curve (mcU/ml · 120 min):1424.805

value: change in insulin from 0 to 30 min (mcU/ml):24.52

value: change in glucose from 0 to 30 min (mg/dl):41

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.5980488

value: oral disposition index = dinsg030 / mttins0:0.0998912


title: plasma_DWM_3mo_POETS

tag: tissue

value: plasma

tag: acrostic

value: POETS

value: DWM

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):104

value: meal tolerance test glucose time 30 min (mg/dl):120

value: meal tolerance test glucose time 120 min (mg/dl):192

value: meal tolerance test insulin time 0 min (mcU/ml):5.45499992370605

value: meal tolerance test insulin time 15 min (mcU/ml):5.12799978256226

value: meal tolerance test insulin time 30 min (mcU/ml):7.81799983978271

value: meal tolerance test insulin time 60 min (mcU/ml):27.3640003204346

value: meal tolerance test insulin time 120 min (mcU/ml):29.5909996032715

tag: homair

tag: homab

tag: matsuda

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2412.847

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1758.248

value: change in insulin from 0 to 30 min (mcU/ml):2.363

value: change in glucose from 0 to 30 min (mg/dl):16

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.1476875

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0270738


title: Pre-treatment Breast Cancer Biopsy 906795

city: Novato

first: Christina

last: Yau

state: CA

address: 8001 Redwood Blvd

institute: Buck Institute of Age Research

data_processing: gnormalized signal (log2) data, as provided in the raw files on each patient, was extracted and aligned to the 75th quantile across arrays by Agendia. All values indicated for non-conformity, as indicated by the 'gIsFeatNonUnifOL' column in the raw files, are NA'd out. Probeset level data per array were mean-collapsed to the gene level, and genes common to the two platforms identified.  Expression data from the first ~900 I-SPY 2 patients distributed over the two platforms were combined into a single gene-level dataset over the set of common genes after batch-adjusting using ComBat [PMID:16632515].  The data matrix for this study constitutes 127 samples from this larger COMBAT-combined expression set.  Linear adjustment factors were derived from the larger ComBat operation, per platform, and can be used against these 127 samples for batch correcting on raw files.  The linear adjustment factors and updated probe annotation files per platform are provided.

source_name: Breast cancer biopsy (pre-treatment)

extract_protocol: Extraction, labeling, hybridization, and scanning are performed by Agendia Inc (Irvine, CA).  This company is referenced by the platforms used: GPL20078 and GPL16233.

tag: hr

tag: mp

tag: pcr

tag: arm

value: TH Control


title: plasma_DWM_24mo_INTRO

tag: tissue

value: plasma

tag: acrostic

value: INTRO

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0


title: plasma_RYGB_24mo_FLAGS

tag: tissue

tag: acrostic

value: FLAGS

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)


title: plasma_RYGB_0mo_MAGIC

value: MAGIC

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

value: meal tolerance test glucose time 0 min (mg/dl):180

value: meal tolerance test glucose time 15 min (mg/dl):161

value: meal tolerance test glucose time 30 min (mg/dl):177

value: meal tolerance test glucose time 60 min (mg/dl):208

value: meal tolerance test glucose time 120 min (mg/dl):209

value: meal tolerance test insulin time 0 min (mcU/ml):5.72700023651123

value: meal tolerance test insulin time 15 min (mcU/ml):5.8270001411438

value: meal tolerance test insulin time 30 min (mcU/ml):5.42999982833862

value: meal tolerance test insulin time 60 min (mcU/ml):5.42999982833862

value: meal tolerance test insulin time 120 min (mcU/ml):4.74700021743774

tag: homair

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):639.2925

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):-47.94753

value: change in insulin from 0 to 30 min (mcU/ml):-0.2970004

value: change in glucose from 0 to 30 min (mg/dl):-3

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.0990001

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0172866


title: plasma_DWM_0mo_RODEO

tag: tissue

value: plasma

tag: acrostic

value: RODEO

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):181

value: meal tolerance test glucose time 15 min (mg/dl):214

value: meal tolerance test glucose time 30 min (mg/dl):252

value: meal tolerance test glucose time 60 min (mg/dl):261

value: meal tolerance test glucose time 120 min (mg/dl):245

value: meal tolerance test insulin time 0 min (mcU/ml):7.38600015640259

value: meal tolerance test insulin time 15 min (mcU/ml):22.3810005187988

value: meal tolerance test insulin time 30 min (mcU/ml):17.9020004272461

value: meal tolerance test insulin time 60 min (mcU/ml):19.5580005645752

value: meal tolerance test insulin time 120 min (mcU/ml):16.4330005645752

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):2167.005

value: insulin incremental area under curve (mcU/ml · 120 min):1280.685

value: change in insulin from 0 to 30 min (mcU/ml):10.516

value: change in glucose from 0 to 30 min (mg/dl):71

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.1481127

value: oral disposition index = dinsg030 / mttins0:0.0200532


title: plasma_RYGB_36mo_VISTA

tag: tissue

value: plasma

tag: acrostic

value: VISTA

value: RYGB

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1


title: plasma_RYGB_3mo_REMIX

value: REMIX

tag: group

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):85

value: meal tolerance test glucose time 15 min (mg/dl):166

value: meal tolerance test glucose time 30 min (mg/dl):182

value: meal tolerance test glucose time 60 min (mg/dl):166

value: meal tolerance test glucose time 120 min (mg/dl):106

value: meal tolerance test insulin time 0 min (mcU/ml):10.5150003433228

value: meal tolerance test insulin time 15 min (mcU/ml):99.995002746582

value: meal tolerance test insulin time 30 min (mcU/ml):100.755996704102

value: meal tolerance test insulin time 60 min (mcU/ml):47.367000579834

value: meal tolerance test insulin time 120 min (mcU/ml):16.3199996948242

tag: homair

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):6466.913

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):5205.112

value: change in insulin from 0 to 30 min (mcU/ml):90.241

value: change in glucose from 0 to 30 min (mg/dl):97

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.9303195

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0884755


title: plasma_RYGB_12mo_KAYAK

tag: tissue

value: plasma

tag: acrostic

value: KAYAK

tag: group

value: RYGB

tag: albumin/creatinine ratio

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 15 min (mg/dl):151

value: meal tolerance test glucose time 30 min (mg/dl):198

value: meal tolerance test glucose time 60 min (mg/dl):172

value: meal tolerance test glucose time 120 min (mg/dl):116

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):56.7410011291504

value: meal tolerance test insulin time 30 min (mcU/ml):34.8580017089844

value: meal tolerance test insulin time 60 min (mcU/ml):27.0200004577637

value: meal tolerance test insulin time 120 min (mcU/ml):11.7910003662109

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

value: insulin total area under curve (mcU/ml · 120 min):3228.675

value: insulin incremental area under curve (mcU/ml · 120 min):2850.675

value: change in insulin from 0 to 30 min (mcU/ml):31.708

value: change in glucose from 0 to 30 min (mg/dl):113

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.2806018

value: oral disposition index = dinsg030 / mttins0:0.0890799


title: plasma_RYGB_12mo_SHAWL

tag: tissue

value: plasma

tag: acrostic

value: SHAWL

value: RYGB

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):108

value: meal tolerance test glucose time 15 min (mg/dl):231

value: meal tolerance test glucose time 30 min (mg/dl):226

value: meal tolerance test glucose time 60 min (mg/dl):179

value: meal tolerance test glucose time 120 min (mg/dl):133

value: meal tolerance test insulin time 0 min (mcU/ml):6.3769998550415

value: meal tolerance test insulin time 15 min (mcU/ml):103.940002441406

value: meal tolerance test insulin time 30 min (mcU/ml):124.955001831055

value: meal tolerance test insulin time 60 min (mcU/ml):27.1070003509521

value: meal tolerance test insulin time 120 min (mcU/ml):5.69199991226196

tag: homair

tag: homab

tag: matsuda

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):5808.99

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):5043.75

value: change in insulin from 0 to 30 min (mcU/ml):118.578

value: change in glucose from 0 to 30 min (mg/dl):118

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):1.004898

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.1575817


title: plasma_RYGB_36mo_FLAGS

tag: tissue

value: plasma

tag: acrostic

value: FLAGS

tag: group

value: RYGB

tag: albumin/creatinine ratio

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure


title: plasma_DWM_24mo_FOGGY

tag: tissue

tag: acrostic

value: FOGGY

value: DWM

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)


title: Pre-treatment Breast Cancer Biopsy 856159

hyb_protocol: Extraction, labeling, hybridization, and scanning are performed by Agendia Inc (Irvine, CA).

tag: hr

tag: mp

tag: pcr

tag: arm

value: TH Control


title: plasma_DWM_3mo_HUMAN

value: HUMAN

tag: group

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test insulin time 0 min (mcU/ml):10.2159996032715

tag: homair

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1


title: plasma_RYGB_3mo_MAGIC

tag: tissue

tag: acrostic

value: MAGIC

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):114

value: meal tolerance test glucose time 15 min (mg/dl):181

value: meal tolerance test glucose time 30 min (mg/dl):187

value: meal tolerance test glucose time 60 min (mg/dl):139

value: meal tolerance test glucose time 120 min (mg/dl):122

value: meal tolerance test insulin time 0 min (mcU/ml):4.12099981307983

value: meal tolerance test insulin time 15 min (mcU/ml):40.6800003051758

value: meal tolerance test insulin time 30 min (mcU/ml):59.0320014953613

value: meal tolerance test insulin time 60 min (mcU/ml):5.81500005722046

value: meal tolerance test insulin time 120 min (mcU/ml):4.69199991226196

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2371.762

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1877.243

value: change in insulin from 0 to 30 min (mcU/ml):54.911

value: change in glucose from 0 to 30 min (mg/dl):73

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.7522056

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.1825299


title: plasma_DWM_36mo_WALTZ

tag: tissue

value: plasma

value: WALTZ

tag: group

value: DWM

tag: albumin/creatinine ratio

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0


title: plasma_DWM_0mo_ELBOW

tag: tissue

tag: acrostic

value: ELBOW

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):123

value: meal tolerance test glucose time 15 min (mg/dl):145

value: meal tolerance test glucose time 30 min (mg/dl):174

value: meal tolerance test glucose time 60 min (mg/dl):196

value: meal tolerance test glucose time 120 min (mg/dl):164

value: meal tolerance test insulin time 0 min (mcU/ml):8.39700031280518

value: meal tolerance test insulin time 15 min (mcU/ml):20.1509990692139

value: meal tolerance test insulin time 30 min (mcU/ml):28.92799949646

value: meal tolerance test insulin time 60 min (mcU/ml):26.3460006713867

value: meal tolerance test insulin time 120 min (mcU/ml):17.1019992828369

tag: homair

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2714.752

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1707.112

value: change in insulin from 0 to 30 min (mcU/ml):20.531

value: change in glucose from 0 to 30 min (mg/dl):51

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.4025686

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.047942


title: plasma_RYGB_3mo_XEROX

tag: tissue

value: plasma

tag: acrostic

value: XEROX

tag: group

value: RYGB

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):99

value: meal tolerance test glucose time 15 min (mg/dl):192

value: meal tolerance test glucose time 30 min (mg/dl):183

value: meal tolerance test glucose time 60 min (mg/dl):177

value: meal tolerance test glucose time 120 min (mg/dl):134

value: meal tolerance test insulin time 0 min (mcU/ml):7.24200010299683

value: meal tolerance test insulin time 15 min (mcU/ml):46.9609985351562

value: meal tolerance test insulin time 30 min (mcU/ml):95.3209991455078

value: meal tolerance test insulin time 60 min (mcU/ml):51.9469985961914

value: meal tolerance test insulin time 120 min (mcU/ml):15.8290004730225

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):5715.938

value: insulin incremental area under curve (mcU/ml · 120 min):4846.897

value: change in insulin from 0 to 30 min (mcU/ml):88.079

value: change in glucose from 0 to 30 min (mg/dl):84

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):1.04856

value: oral disposition index = dinsg030 / mttins0:0.1447887


title: plasma_DWM_3mo_ORBIT

value: plasma

value: ORBIT

value: DWM

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):88

value: meal tolerance test glucose time 15 min (mg/dl):132

value: meal tolerance test glucose time 30 min (mg/dl):133

value: meal tolerance test glucose time 60 min (mg/dl):139

value: meal tolerance test glucose time 120 min (mg/dl):141

value: meal tolerance test insulin time 0 min (mcU/ml):10.4309997558594

value: meal tolerance test insulin time 15 min (mcU/ml):47.439998626709

value: meal tolerance test insulin time 30 min (mcU/ml):47.6119995117188

value: meal tolerance test insulin time 60 min (mcU/ml):40.9770011901855

value: meal tolerance test insulin time 120 min (mcU/ml):67.4189987182617

tag: homair

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):5727.638

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):4475.917

value: change in insulin from 0 to 30 min (mcU/ml):37.181

value: change in glucose from 0 to 30 min (mg/dl):45

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.8262444

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0792105


title: plasma_RYGB_12mo_BLUSH

tag: tissue

value: plasma

tag: acrostic

value: BLUSH

tag: group

value: RYGB

tag: albumin/creatinine ratio

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):157

value: meal tolerance test glucose time 15 min (mg/dl):225

value: meal tolerance test glucose time 30 min (mg/dl):242

value: meal tolerance test glucose time 60 min (mg/dl):209

value: meal tolerance test glucose time 120 min (mg/dl):173

value: meal tolerance test insulin time 0 min (mcU/ml):3.30900001525879

value: meal tolerance test insulin time 15 min (mcU/ml):13.6079998016357

value: meal tolerance test insulin time 30 min (mcU/ml):19.2600002288818

value: meal tolerance test insulin time 60 min (mcU/ml):18.761999130249

value: meal tolerance test insulin time 120 min (mcU/ml):3.77300000190735

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):1619.767

value: insulin incremental area under curve (mcU/ml · 120 min):1222.688

value: change in insulin from 0 to 30 min (mcU/ml):15.951

value: change in glucose from 0 to 30 min (mg/dl):85

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.1876588

value: oral disposition index = dinsg030 / mttins0:0.0567116


title: plasma_RYGB_0mo_VIDEO

tag: tissue

value: plasma

tag: acrostic

value: VIDEO

value: RYGB

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):143

value: meal tolerance test glucose time 15 min (mg/dl):155

value: meal tolerance test glucose time 30 min (mg/dl):181

value: meal tolerance test glucose time 60 min (mg/dl):176

value: meal tolerance test glucose time 120 min (mg/dl):177

value: meal tolerance test insulin time 0 min (mcU/ml):7.5310001373291

value: meal tolerance test insulin time 15 min (mcU/ml):14.5459995269775

value: meal tolerance test insulin time 30 min (mcU/ml):47.0900001525879

value: meal tolerance test insulin time 60 min (mcU/ml):16.3659992218018

value: meal tolerance test insulin time 120 min (mcU/ml):11.7320003509521

tag: homair

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2422.627

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1518.907

value: change in insulin from 0 to 30 min (mcU/ml):39.559

value: change in glucose from 0 to 30 min (mg/dl):38

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):1.041026

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.1382321


title: plasma_RYGB_3mo_SCOPE

tag: tissue

value: plasma

tag: acrostic

value: SCOPE

tag: group

value: RYGB

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):70

value: meal tolerance test glucose time 15 min (mg/dl):154

value: meal tolerance test glucose time 30 min (mg/dl):179

value: meal tolerance test glucose time 60 min (mg/dl):155

value: meal tolerance test glucose time 120 min (mg/dl):110

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):48.0219993591309

value: meal tolerance test insulin time 30 min (mcU/ml):58.3450012207031

value: meal tolerance test insulin time 60 min (mcU/ml):9.11900043487549

value: meal tolerance test insulin time 120 min (mcU/ml):4.91800022125244

value: HOMA-B cell (%):162

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):2614.613

value: insulin incremental area under curve (mcU/ml · 120 min):2236.613

value: change in insulin from 0 to 30 min (mcU/ml):55.195

value: change in glucose from 0 to 30 min (mg/dl):109

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.5063761

value: oral disposition index = dinsg030 / mttins0:0.1607543


title: plasma_RYGB_0mo_SCOPE

value: plasma

value: SCOPE

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):133

value: meal tolerance test glucose time 15 min (mg/dl):132

value: meal tolerance test glucose time 30 min (mg/dl):152

value: meal tolerance test glucose time 60 min (mg/dl):198

value: meal tolerance test glucose time 120 min (mg/dl):174

value: meal tolerance test insulin time 0 min (mcU/ml):3.43899989128113

value: meal tolerance test insulin time 15 min (mcU/ml):3.84100008010864

value: meal tolerance test insulin time 30 min (mcU/ml):7.07600021362305

value: meal tolerance test insulin time 60 min (mcU/ml):15.0080003738403

value: meal tolerance test insulin time 120 min (mcU/ml):6.21500015258789

tag: homair

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):1104.427

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):691.7476

value: change in insulin from 0 to 30 min (mcU/ml):3.637

value: change in glucose from 0 to 30 min (mg/dl):19

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.1914211

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0556618


title: plasma_RYGB_3mo_BLUSH

tag: tissue

value: plasma

tag: acrostic

value: BLUSH

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):137

value: meal tolerance test glucose time 15 min (mg/dl):232

value: meal tolerance test glucose time 30 min (mg/dl):231

value: meal tolerance test glucose time 60 min (mg/dl):232

value: meal tolerance test glucose time 120 min (mg/dl):198

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):25.4699993133545

value: meal tolerance test insulin time 30 min (mcU/ml):17.5459995269775

value: meal tolerance test insulin time 60 min (mcU/ml):13.9779996871948

value: meal tolerance test insulin time 120 min (mcU/ml):6.29300022125244

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):1618.26

value: insulin incremental area under curve (mcU/ml · 120 min):1240.26

value: change in insulin from 0 to 30 min (mcU/ml):14.396

value: change in glucose from 0 to 30 min (mg/dl):94

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.1531489

value: oral disposition index = dinsg030 / mttins0:0.0486187


title: plasma_DWM_36mo_POETS

tag: tissue

value: plasma

tag: acrostic

value: POETS

value: DWM

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)


title: plasma_RYGB_24mo_VIDEO

value: VIDEO

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1


title: plasma_DWM_0mo_IVORY

tag: tissue

tag: acrostic

value: IVORY

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: alt (iu/l)

tag: ast (iu/l)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):202

value: meal tolerance test glucose time 15 min (mg/dl):194

value: meal tolerance test glucose time 30 min (mg/dl):239

value: meal tolerance test glucose time 60 min (mg/dl):241

value: meal tolerance test glucose time 120 min (mg/dl):252

value: meal tolerance test insulin time 0 min (mcU/ml):4.64799976348877

value: meal tolerance test insulin time 15 min (mcU/ml):8.77999973297119

value: meal tolerance test insulin time 30 min (mcU/ml):6.2979998588562

value: meal tolerance test insulin time 60 min (mcU/ml):8.53800010681152

value: meal tolerance test insulin time 120 min (mcU/ml):9.93900012969971

tag: homair

tag: homab

tag: matsuda

tag: dmcure

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):990.645

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):432.885

value: change in insulin from 0 to 30 min (mcU/ml):1.65

value: change in glucose from 0 to 30 min (mg/dl):37

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.0445946

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0095944


title: plasma_DWM_3mo_NURSE

tag: tissue

value: plasma

tag: acrostic

value: NURSE

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):162

value: meal tolerance test glucose time 15 min (mg/dl):171

value: meal tolerance test glucose time 30 min (mg/dl):195

value: meal tolerance test glucose time 60 min (mg/dl):218

value: meal tolerance test glucose time 120 min (mg/dl):207

value: meal tolerance test insulin time 0 min (mcU/ml):14.6770000457764

value: meal tolerance test insulin time 15 min (mcU/ml):21.1620006561279

value: meal tolerance test insulin time 30 min (mcU/ml):30.8799991607666

value: meal tolerance test insulin time 60 min (mcU/ml):34.2210006713867

value: meal tolerance test insulin time 120 min (mcU/ml):23.3969993591309

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):3364.163

value: insulin incremental area under curve (mcU/ml · 120 min):1602.922

value: change in insulin from 0 to 30 min (mcU/ml):16.203

value: change in glucose from 0 to 30 min (mg/dl):33

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.491

value: oral disposition index = dinsg030 / mttins0:0.0334537


title: plasma_RYGB_24mo_KAYAK

tag: tissue

value: plasma

tag: acrostic

value: KAYAK

value: RYGB

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: alt (iu/l)

tag: ast (iu/l)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1


title: plasma_DWM_36mo_RODEO

value: RODEO

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)


title: plasma_RYGB_0mo_LILAC

tag: tissue

tag: acrostic

value: LILAC

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):102

value: meal tolerance test glucose time 15 min (mg/dl):112

value: meal tolerance test glucose time 30 min (mg/dl):152

value: meal tolerance test glucose time 60 min (mg/dl):195

value: meal tolerance test glucose time 120 min (mg/dl):188

value: meal tolerance test insulin time 0 min (mcU/ml):4.11999988555908

value: meal tolerance test insulin time 15 min (mcU/ml):28.8080005645752

value: meal tolerance test insulin time 30 min (mcU/ml):58.3450012207031

value: meal tolerance test insulin time 60 min (mcU/ml):49.8549995422363

value: meal tolerance test insulin time 120 min (mcU/ml):56.3619995117188

tag: homair

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):5710.118

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):5215.717

value: change in insulin from 0 to 30 min (mcU/ml):54.225

value: change in glucose from 0 to 30 min (mg/dl):50

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):1.0845

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.2632282


title: plasma_RYGB_24mo_QUART

tag: tissue

value: plasma

tag: acrostic

value: QUART

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1


title: plasma_DWM_12mo_HUMAN

tag: tissue

tag: acrostic

value: HUMAN

value: DWM

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):139

value: meal tolerance test glucose time 15 min (mg/dl):165

value: meal tolerance test glucose time 30 min (mg/dl):163

value: meal tolerance test glucose time 60 min (mg/dl):198

value: meal tolerance test glucose time 120 min (mg/dl):187

value: meal tolerance test insulin time 0 min (mcU/ml):13.3159999847412

value: meal tolerance test insulin time 15 min (mcU/ml):33.5250015258789

value: meal tolerance test insulin time 30 min (mcU/ml):23.6049995422363

value: meal tolerance test insulin time 60 min (mcU/ml):40.7799987792969

value: meal tolerance test insulin time 120 min (mcU/ml):38.0709991455078

tag: homair

tag: homab

tag: matsuda

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):4111.087

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):2513.167

value: change in insulin from 0 to 30 min (mcU/ml):10.289

value: change in glucose from 0 to 30 min (mg/dl):24

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.4287083

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.032195


title: plasma_DWM_12mo_WALTZ

tag: tissue

value: plasma

tag: acrostic

value: WALTZ

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):119

value: meal tolerance test glucose time 15 min (mg/dl):150

value: meal tolerance test glucose time 30 min (mg/dl):199

value: meal tolerance test glucose time 60 min (mg/dl):237

value: meal tolerance test glucose time 120 min (mg/dl):210

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 30 min (mcU/ml):7.75799989700317

value: meal tolerance test insulin time 60 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 120 min (mcU/ml):10.246000289917

tag: dmcure

value: insulin total area under curve (mcU/ml · 120 min):694.56

value: insulin incremental area under curve (mcU/ml · 120 min):316.56

value: change in insulin from 0 to 30 min (mcU/ml):4.608

value: change in glucose from 0 to 30 min (mg/dl):80

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.0576

value: oral disposition index = dinsg030 / mttins0:0.0182857


title: plasma_DWM_0mo_POETS

tag: tissue

value: plasma

tag: acrostic

value: POETS

value: DWM

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):144

value: meal tolerance test glucose time 15 min (mg/dl):152

value: meal tolerance test glucose time 30 min (mg/dl):186

value: meal tolerance test glucose time 60 min (mg/dl):244

value: meal tolerance test glucose time 120 min (mg/dl):239

value: meal tolerance test insulin time 0 min (mcU/ml):6.01300001144409

value: meal tolerance test insulin time 15 min (mcU/ml):10.4919996261597

value: meal tolerance test insulin time 30 min (mcU/ml):13.9060001373291

value: meal tolerance test insulin time 60 min (mcU/ml):19.0790004730225

value: meal tolerance test insulin time 120 min (mcU/ml):12.2250003814697

tag: homair

tag: homab

tag: matsuda

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):1740.667

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1019.108

value: change in insulin from 0 to 30 min (mcU/ml):7.893

value: change in glucose from 0 to 30 min (mg/dl):42

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.1879286

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0312537


title: plasma_DWM_36mo_INTRO

tag: tissue

value: plasma

tag: acrostic

value: INTRO

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure


title: plasma_RYGB_24mo_RELIC

tag: tissue

tag: acrostic

value: RELIC

value: RYGB

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1


title: plasma_RYGB_3mo_IMAGE

value: IMAGE

tag: group

tag: height (cm)

tag: mo

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

value: meal tolerance test glucose time 0 min (mg/dl):75

value: meal tolerance test glucose time 15 min (mg/dl):143

value: meal tolerance test glucose time 30 min (mg/dl):170

value: meal tolerance test glucose time 60 min (mg/dl):164

value: meal tolerance test glucose time 120 min (mg/dl):128

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):13.4829998016357

value: meal tolerance test insulin time 30 min (mcU/ml):21.8659992218018

value: meal tolerance test insulin time 60 min (mcU/ml):25.3700008392334

value: meal tolerance test insulin time 120 min (mcU/ml):6.42799997329712

tag: homair

tag: homab

value: HOMA-B cell (%):94.5

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2052.345

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1674.345

value: change in insulin from 0 to 30 min (mcU/ml):18.716

value: change in glucose from 0 to 30 min (mg/dl):95

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.1970105

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.062543


title: plasma_DWM_24mo_ELBOW

tag: tissue

value: plasma

tag: acrostic

value: ELBOW

tag: group

value: DWM

tag: height (cm)

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0


title: plasma_RYGB_24mo_HUMOR

tag: tissue

tag: acrostic

value: HUMOR

value: RYGB

tag: mo

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)


title: Pre-treatment Breast Cancer Biopsy 824234

scan_protocol: Extraction, labeling, hybridization, and scanning are performed by Agendia Inc (Irvine, CA).

tag: hr

tag: mp

tag: pcr

tag: arm

value: TH Control


title: plasma_DWM_3mo_GLASS

value: GLASS

tag: group

tag: height (cm)

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):98

value: meal tolerance test glucose time 15 min (mg/dl):118

value: meal tolerance test glucose time 30 min (mg/dl):161

value: meal tolerance test glucose time 60 min (mg/dl):201

value: meal tolerance test glucose time 120 min (mg/dl):167

value: meal tolerance test insulin time 0 min (mcU/ml):8.48999977111816

value: meal tolerance test insulin time 15 min (mcU/ml):5.10799980163574

value: meal tolerance test insulin time 30 min (mcU/ml):31.0209999084473

value: meal tolerance test insulin time 60 min (mcU/ml):47.8559989929199

value: meal tolerance test insulin time 120 min (mcU/ml):35.0250015258789

tag: homair

tag: homab

tag: matsuda

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):4042.538

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):3023.738

value: change in insulin from 0 to 30 min (mcU/ml):22.531

value: change in glucose from 0 to 30 min (mg/dl):63

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.3576349

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0421243


title: plasma_RYGB_0mo_BLUSH

tag: tissue

value: plasma

tag: acrostic

value: BLUSH

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

value: meal tolerance test glucose time 0 min (mg/dl):111

value: meal tolerance test glucose time 15 min (mg/dl):113

value: meal tolerance test glucose time 30 min (mg/dl):119

value: meal tolerance test glucose time 60 min (mg/dl):147

value: meal tolerance test glucose time 120 min (mg/dl):193

value: meal tolerance test insulin time 0 min (mcU/ml):18.6720008850098

value: meal tolerance test insulin time 15 min (mcU/ml):18.5480003356934

value: meal tolerance test insulin time 30 min (mcU/ml):10.5550003051758

value: meal tolerance test insulin time 60 min (mcU/ml):10.0629997253418

value: meal tolerance test insulin time 120 min (mcU/ml):38.140998840332

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):2252.813

value: insulin incremental area under curve (mcU/ml · 120 min):12.17237

value: change in insulin from 0 to 30 min (mcU/ml):-8.117001

value: change in glucose from 0 to 30 min (mg/dl):8

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):-1.014625

value: oral disposition index = dinsg030 / mttins0:-0.0543394


title: plasma_RYGB_3mo_SHAWL

tag: tissue

value: plasma

tag: acrostic

value: SHAWL

value: RYGB

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):88

value: meal tolerance test glucose time 15 min (mg/dl):176

value: meal tolerance test glucose time 30 min (mg/dl):190

value: meal tolerance test glucose time 60 min (mg/dl):163

value: meal tolerance test glucose time 120 min (mg/dl):112

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):57.5639991760254

value: meal tolerance test insulin time 30 min (mcU/ml):67.7279968261719

value: meal tolerance test insulin time 60 min (mcU/ml):34.7529983520508

value: meal tolerance test insulin time 120 min (mcU/ml):11.6960000991821

tag: homair

tag: homab

tag: matsuda

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):4325.73

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):3947.73

value: change in insulin from 0 to 30 min (mcU/ml):64.578

value: change in glucose from 0 to 30 min (mg/dl):102

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.6331176

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.2009897


title: plasma_DWM_0mo_GLASS

tag: tissue

value: plasma

tag: acrostic

value: GLASS

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

value: meal tolerance test glucose time 0 min (mg/dl):168

value: meal tolerance test glucose time 15 min (mg/dl):167

value: meal tolerance test glucose time 30 min (mg/dl):169

value: meal tolerance test glucose time 60 min (mg/dl):240

value: meal tolerance test glucose time 120 min (mg/dl):247

value: meal tolerance test insulin time 0 min (mcU/ml):13.9399995803833

value: meal tolerance test insulin time 15 min (mcU/ml):15.7220001220703

value: meal tolerance test insulin time 30 min (mcU/ml):23.8990001678467

value: meal tolerance test insulin time 60 min (mcU/ml):25.9459991455078

value: meal tolerance test insulin time 120 min (mcU/ml):21.7189998626709

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):2697.248

value: insulin incremental area under curve (mcU/ml · 120 min):1024.448

value: change in insulin from 0 to 30 min (mcU/ml):9.959001

value: change in glucose from 0 to 30 min (mg/dl):1

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):9.959001

value: oral disposition index = dinsg030 / mttins0:0.714419


title: plasma_RYGB_12mo_LILAC

tag: tissue

value: plasma

tag: acrostic

value: LILAC

value: RYGB

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):97

value: meal tolerance test glucose time 15 min (mg/dl):213

value: meal tolerance test glucose time 30 min (mg/dl):242

value: meal tolerance test glucose time 60 min (mg/dl):184

value: meal tolerance test glucose time 120 min (mg/dl):119

value: meal tolerance test insulin time 0 min (mcU/ml):4.47700023651123

value: meal tolerance test insulin time 15 min (mcU/ml):59.4710006713867

value: meal tolerance test insulin time 30 min (mcU/ml):100.22200012207

value: meal tolerance test insulin time 60 min (mcU/ml):52.2159996032715

value: meal tolerance test insulin time 120 min (mcU/ml):15.0080003738403

tag: homair

tag: homab

tag: matsuda

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):5980.598

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):5443.357

value: change in insulin from 0 to 30 min (mcU/ml):95.745

value: change in glucose from 0 to 30 min (mg/dl):145

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.6603104

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.1474895


title: plasma_RYGB_36mo_VIDEO

tag: tissue

value: plasma

tag: acrostic

value: VIDEO

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)


title: MKN7_EB_RNAseq_shEHF

type: SRA

city: Chiba

first: Masaki

last: Fukuyo

address: 1-8-1 Inohana, Chuo-ku

department: Department of Molecular Oncology

country: Japan

institute: Chiba University

library_source: transcriptomic

data_processing:
BCL2FASTQ version1.8.4 software was used for basecalling.
Reads were aligned to hg19 genome assembly with Hisat v2.2.1.0 for RNA-Seq.
Reads with more than two mismatches were removed form aligned reads for RNA-Seq.
Fragments per kilobase of exon model per million mapped fragments (FPKM) were calculated using Cufflinks v2.2.1for RNA-seq
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each Sample

molecule: polyA RNA

source_name: Gastric cancer cell line

growth_protocol: These cells were cultured in RPMI 1640 (Wako, Tokyo, Japan) with 10% fetal bovine serum (FBS) (HyClone SH30910.03, GE Healthcare, Chicago, IL) and Penicillin-Streptomycin (Sigma-Aldrich, St. Louis, MO) at 37 °C in 5% CO2 incubator.

extract_protocol:
RNA was extracted using the TRIzol Reagent (Termo Fisher) and the Direct-zol RNA MiniPrep Kit (Zymo Research) following the manufacturer’s protocol
Libraries were prepared TruSeq Stranded mRNA Sample Prep Kit (Illumina).

tag: cell type

value: EBV infected cell


title: plasma_RYGB_0mo_XEROX

tag: tissue

tag: acrostic

value: XEROX

tag: group

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):123

value: meal tolerance test glucose time 15 min (mg/dl):127

value: meal tolerance test glucose time 30 min (mg/dl):156

value: meal tolerance test glucose time 60 min (mg/dl):186

value: meal tolerance test glucose time 120 min (mg/dl):190

value: meal tolerance test insulin time 0 min (mcU/ml):12.7690000534058

value: meal tolerance test insulin time 15 min (mcU/ml):18.2999992370605

value: meal tolerance test insulin time 30 min (mcU/ml):38.6759986877441

value: meal tolerance test insulin time 60 min (mcU/ml):48.8339996337891

value: meal tolerance test insulin time 120 min (mcU/ml):58.4249992370605

tag: homair

tag: homab

tag: matsuda

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):5190.757

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):3658.477

value: change in insulin from 0 to 30 min (mcU/ml):25.907

value: change in glucose from 0 to 30 min (mg/dl):33

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.7850605

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0614818


title: plasma_RYGB_36mo_KAYAK

tag: tissue

value: plasma

tag: acrostic

value: KAYAK

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1


title: plasma_RYGB_24mo_FENCE

tag: tissue

tag: acrostic

value: FENCE

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure


title: MKN7_EB_RNAseq_shCTRL

tag: cell type

value: EBV infected cell


title: Pre-treatment Breast Cancer Biopsy 501303

label_protocol: Extraction, labeling, hybridization, and scanning are performed by Agendia Inc (Irvine, CA).

tag: hr

tag: mp

tag: pcr

tag: arm

value: TH Control


title: Pre-treatment Breast Cancer Biopsy 539904


title: plasma_DWM_3mo_IVORY

tag: tissue

value: IVORY

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: sbp (mmhg)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

value: meal tolerance test glucose time 0 min (mg/dl):114

value: meal tolerance test glucose time 15 min (mg/dl):136

value: meal tolerance test glucose time 30 min (mg/dl):186

value: meal tolerance test glucose time 60 min (mg/dl):154

value: meal tolerance test glucose time 120 min (mg/dl):200

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):7.34299993515015

value: meal tolerance test insulin time 30 min (mcU/ml):6.24100017547607

value: meal tolerance test insulin time 60 min (mcU/ml):11.4809999465942

value: meal tolerance test insulin time 120 min (mcU/ml):6.69999980926514

tag: homair

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):991.8375

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):613.8375

value: change in insulin from 0 to 30 min (mcU/ml):3.091

value: change in glucose from 0 to 30 min (mg/dl):72

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.0429306

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0136287


title: plasma_DWM_12mo_NURSE

tag: tissue

value: plasma

tag: acrostic

value: NURSE

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: serum creatinine (mg/dl)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):206

value: meal tolerance test glucose time 15 min (mg/dl):233

value: meal tolerance test glucose time 30 min (mg/dl):268

value: meal tolerance test glucose time 60 min (mg/dl):298

value: meal tolerance test glucose time 120 min (mg/dl):240

value: meal tolerance test insulin time 0 min (mcU/ml):13.9689998626709

value: meal tolerance test insulin time 15 min (mcU/ml):27.1599998474121

value: meal tolerance test insulin time 30 min (mcU/ml):33.9790000915527

value: meal tolerance test insulin time 60 min (mcU/ml):35.6549987792969

value: meal tolerance test insulin time 120 min (mcU/ml):24.8490009307861

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

value: insulin total area under curve (mcU/ml · 120 min):3626.64

value: insulin incremental area under curve (mcU/ml · 120 min):1950.36

value: change in insulin from 0 to 30 min (mcU/ml):20.01

value: change in glucose from 0 to 30 min (mg/dl):62

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.3227419

value: oral disposition index = dinsg030 / mttins0:0.0231042


title: plasma_RYGB_12mo_PATCH

tag: tissue

value: plasma

tag: acrostic

value: PATCH

value: RYGB

tag: sbp (mmhg)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

value: meal tolerance test glucose time 0 min (mg/dl):86

value: meal tolerance test glucose time 15 min (mg/dl):186

value: meal tolerance test glucose time 30 min (mg/dl):224

value: meal tolerance test glucose time 60 min (mg/dl):216

value: meal tolerance test glucose time 120 min (mg/dl):179

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):23.8360004425049

value: meal tolerance test insulin time 30 min (mcU/ml):20.5090007781982

value: meal tolerance test insulin time 60 min (mcU/ml):9.27499961853027

value: meal tolerance test insulin time 120 min (mcU/ml):4.49599981307983

tag: homair

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):1394.873

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1016.872

value: change in insulin from 0 to 30 min (mcU/ml):17.359

value: change in glucose from 0 to 30 min (mg/dl):138

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.1257899

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0399333


title: plasma_RYGB_3mo_LILAC

tag: tissue

value: plasma

tag: acrostic

value: LILAC

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):90

value: meal tolerance test glucose time 15 min (mg/dl):172

value: meal tolerance test glucose time 30 min (mg/dl):201

value: meal tolerance test glucose time 60 min (mg/dl):168

value: meal tolerance test glucose time 120 min (mg/dl):129

value: meal tolerance test insulin time 0 min (mcU/ml):5.82800006866455

value: meal tolerance test insulin time 15 min (mcU/ml):55.5699996948242

value: meal tolerance test insulin time 30 min (mcU/ml):93.6989974975586

value: meal tolerance test insulin time 60 min (mcU/ml):19.1889991760254

value: meal tolerance test insulin time 120 min (mcU/ml):18.6200008392334

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

value: insulin total area under curve (mcU/ml · 120 min):4407.592

value: insulin incremental area under curve (mcU/ml · 120 min):3708.232

value: change in insulin from 0 to 30 min (mcU/ml):87.87099

value: change in glucose from 0 to 30 min (mg/dl):111

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.7916306

value: oral disposition index = dinsg030 / mttins0:0.1358323


title: plasma_RYGB_0mo_IMAGE

value: plasma

value: IMAGE

value: RYGB

tag: albumin/creatinine ratio

tag: sbp (mmhg)

tag: serum creatinine (mg/dl)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

value: meal tolerance test glucose time 0 min (mg/dl):57

value: meal tolerance test glucose time 15 min (mg/dl):69

value: meal tolerance test glucose time 30 min (mg/dl):82

value: meal tolerance test glucose time 60 min (mg/dl):116

value: meal tolerance test glucose time 120 min (mg/dl):122

value: meal tolerance test insulin time 0 min (mcU/ml):6.92399978637695

value: meal tolerance test insulin time 15 min (mcU/ml):11.7209997177124

value: meal tolerance test insulin time 30 min (mcU/ml):14.3400001525879

value: meal tolerance test insulin time 60 min (mcU/ml):21.4349994659424

value: meal tolerance test insulin time 120 min (mcU/ml):21.3729991912842

tag: homair

tag: matsuda

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2156.16

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):1325.28

value: change in insulin from 0 to 30 min (mcU/ml):7.416

value: change in glucose from 0 to 30 min (mg/dl):25

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.29664

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0428423


title: plasma_RYGB_3mo_FENCE

tag: tissue

value: plasma

tag: acrostic

value: FENCE

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):56

value: meal tolerance test glucose time 15 min (mg/dl):123

value: meal tolerance test glucose time 30 min (mg/dl):145

value: meal tolerance test glucose time 60 min (mg/dl):132

value: meal tolerance test glucose time 120 min (mg/dl):97

value: meal tolerance test insulin time 0 min (mcU/ml):4.69899988174438

value: meal tolerance test insulin time 15 min (mcU/ml):33.8089981079102

value: meal tolerance test insulin time 30 min (mcU/ml):40.7849998474121

value: meal tolerance test insulin time 60 min (mcU/ml):30.8379993438721

value: meal tolerance test insulin time 120 min (mcU/ml):15.3229999542236

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

value: insulin total area under curve (mcU/ml · 120 min):3307.44

value: insulin incremental area under curve (mcU/ml · 120 min):2743.56

value: change in insulin from 0 to 30 min (mcU/ml):36.086

value: change in glucose from 0 to 30 min (mg/dl):89

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.4054607

value: oral disposition index = dinsg030 / mttins0:0.0862866


title: plasma_DWM_3mo_ELBOW

value: plasma

value: ELBOW

value: DWM

tag: sbp (mmhg)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

value: meal tolerance test glucose time 0 min (mg/dl):74

value: meal tolerance test glucose time 15 min (mg/dl):77

value: meal tolerance test glucose time 30 min (mg/dl):101

value: meal tolerance test glucose time 60 min (mg/dl):102

value: meal tolerance test glucose time 120 min (mg/dl):152

value: meal tolerance test insulin time 0 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 15 min (mcU/ml):3.15000009536743

value: meal tolerance test insulin time 30 min (mcU/ml):12.1479997634888

value: meal tolerance test insulin time 60 min (mcU/ml):9.11699962615967

value: meal tolerance test insulin time 120 min (mcU/ml):15.289999961853

tag: homair

tag: homab

tag: matsuda

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):1213.17

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):835.17

value: change in insulin from 0 to 30 min (mcU/ml):8.997999

value: change in glucose from 0 to 30 min (mg/dl):27

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.3332592

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.1057966


title: plasma_RYGB_24mo_BLUSH

tag: tissue

value: plasma

tag: acrostic

value: BLUSH

tag: group

value: RYGB

tag: height (cm)

tag: mo

tag: albumin/creatinine ratio

tag: dbp (mmhg)

tag: serum creatinine (mg/dl)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

tag: dmcure


title: plasma_DWM_0mo_RADIO

tag: tissue

tag: acrostic

value: RADIO

value: DWM

tag: sbp (mmhg)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

value: meal tolerance test glucose time 0 min (mg/dl):191

value: meal tolerance test glucose time 15 min (mg/dl):196

value: meal tolerance test glucose time 30 min (mg/dl):243

value: meal tolerance test glucose time 60 min (mg/dl):277

value: meal tolerance test glucose time 120 min (mg/dl):232

value: meal tolerance test insulin time 0 min (mcU/ml):6.22200012207031

value: meal tolerance test insulin time 15 min (mcU/ml):10.9499998092651

value: meal tolerance test insulin time 30 min (mcU/ml):17.4179992675781

value: meal tolerance test insulin time 60 min (mcU/ml):13.2569999694824

value: meal tolerance test insulin time 120 min (mcU/ml):6.76800012588501

tag: homair

tag: homab

tag: matsuda

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):1402.425

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):655.785

value: change in insulin from 0 to 30 min (mcU/ml):11.196

value: change in glucose from 0 to 30 min (mg/dl):52

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.2153077

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0346043


title: plasma_DWM_3mo_JUROR

tag: tissue

value: plasma

tag: acrostic

value: JUROR

tag: group

value: DWM

tag: height (cm)

tag: mo

tag: dbp (mmhg)

tag: alt (iu/l)

tag: ast (iu/l)

tag: hematocrit (%)

tag: white blood count (10^6 / ml)

tag: fasting plasma glucose (mg/dl)

tag: total cholesterol (mg/dl)

tag: ldl cholesterol (mg/dl)

tag: hdl cholesterol (mg/dl)

tag: triglycerides (mg/dl)

value: meal tolerance test glucose time 0 min (mg/dl):76

value: meal tolerance test glucose time 15 min (mg/dl):79

value: meal tolerance test glucose time 30 min (mg/dl):98

value: meal tolerance test glucose time 60 min (mg/dl):130

value: meal tolerance test glucose time 120 min (mg/dl):113

value: meal tolerance test insulin time 0 min (mcU/ml):18.2630004882812

value: meal tolerance test insulin time 15 min (mcU/ml):22.7040004730225

value: meal tolerance test insulin time 30 min (mcU/ml):42.984001159668

value: meal tolerance test insulin time 60 min (mcU/ml):91.4909973144531

value: meal tolerance test insulin time 120 min (mcU/ml):105.690002441406

tag: dmcure

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):1

value: insulin total area under curve (mcU/ml · 120 min):8732.468

value: insulin incremental area under curve (mcU/ml · 120 min):6540.907

value: change in insulin from 0 to 30 min (mcU/ml):24.721

value: change in glucose from 0 to 30 min (mg/dl):22

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):1.123682

value: oral disposition index = dinsg030 / mttins0:0.0615278


title: plasma_RYGB_3mo_PATCH

value: plasma

value: PATCH

value: RYGB

tag: sbp (mmhg)

tag: waist (cm)

tag: weight (kg)

tag: bmi

tag: basal metabolic rate

tag: body fat (%)

tag: fat mass (lb)

tag: fat free mass (lb)

tag: 6 min walk test distance (m)

tag: 6 min walk test heart rate (beats/min)

value: meal tolerance test glucose time 0 min (mg/dl):78

value: meal tolerance test glucose time 15 min (mg/dl):158

value: meal tolerance test glucose time 30 min (mg/dl):211

value: meal tolerance test glucose time 60 min (mg/dl):203

value: meal tolerance test glucose time 120 min (mg/dl):181

value: meal tolerance test insulin time 0 min (mcU/ml):17.5240001678467

value: meal tolerance test insulin time 15 min (mcU/ml):29.4710006713867

value: meal tolerance test insulin time 30 min (mcU/ml):26.2119998931885

value: meal tolerance test insulin time 60 min (mcU/ml):14.5920000076294

value: meal tolerance test insulin time 120 min (mcU/ml):7.57999992370605

tag: homair

tag: homab

tag: matsuda

value: FPG < 126 and HbA1c < 6.5 (0 = no; 1 = yes; 9 = missing):0

tag: instauc

value: insulin total area under curve (mcU/ml · 120 min):2047.305

tag: insiauc

value: insulin incremental area under curve (mcU/ml · 120 min):-55.57501

value: change in insulin from 0 to 30 min (mcU/ml):8.688

value: change in glucose from 0 to 30 min (mg/dl):133

value: change in insulin from 0 to 30 min / change in glucose from 0 to 30 min (mcU/ml / mg/dl):0.0653233

tag: odi

value: oral disposition index = dinsg030 / mttins0:0.0037276


title: rAQP4_IgG_rep3

city: Suita

first: Daisuke

last: Okuzaki

state: Osaka

address: Yamadaoka 3-1

department: Immunology Frontier Research Center

institute: Osaka univ.

description: spinal cords of rats receiving rAQP4-IgG_rep3

data_processing:
Sequencing was performed on an Illumina HiSeq 2500 platform in a 75-base single-end mode.
Illumina Casava1.8.2 software used for basecalling.
Sequenced reads were mapped to the rat reference genome sequences (rn6) using TopHat v2.0.13 in combination with Bowtie2 ver. 2.2.3 and SAMtools ver. 0.1.19.
The raw read counts was calculated using Cufflinks version 2.2.1.
Genome_build: rn6
Supplementary_files_format_and_content: counts

organism: Rattus norvegicus

source_name: rAQP4 IgG group_rep3

extract_protocol:
Total RNA was prepared using ISOGENⅡ(Nippongene) according to the manufacturer’s instructions.
Library preparation was performed using a TruSeq stranded mRNA sample prep kit (Illumina, San Diego, CA) according to the manufacturer’s instructions.

treatment_protocol: For transcriptome analysis in spinal cord tissue, NMOSD or control rats were transcardially perfused with ice-cold PBS under anesthesia with i.p. injection of a mixture of Dormicam, 4 mg/kg; Vetorphale, 5 mg/kg; Domitor 4 mg/kg. Spinal cords (n =3 each group) were cut out at Th10 level

tag: tissue

value: Spinal cords

tag: treatment