title: PRO301A315_S34_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A315_S34_L003


title: 12m_D_NP_80 [rGen01-080]

status: Public on Aug 31 2021

type: RNA

city: Rochester

first: Walter

last: Park

state: MN

address: 200 1st ST SW

country: USA

institute: Mayo Clinic

description:
replicate 1
rGen01-080

hyb_protocol: Standard Illumina hybridization protocol (hybridized to a Human HT-12v4.0 Expression (illumina Inc., San Diego, CA, USA)). Briefly, 750 ng labeled RNA/sample was hybridized to HT-12v4 Expression BeadChips (Illumina, Inc.) for 16 hours. The BeadChip underwent a washing and streptavidin-Cy3 (GE Healthcare Bio-Sciences) conjugate staining protocol.

scan_protocol: Standard Illumina scanning protocol

data_processing: normalization performed using R.

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: 18-gauge kidney allograft biopsy

label_protocol: Biotinylated cRNA was prepared with the Illumina TotalPrep Amplification kit (Ambion-Life technologies). 200 ng of total RNA was reverse transcribed, biotin labeled. Biotinylated cRNA was prepared according to the standard Illumina protocol

extract_protocol: RNA isolation performed using TRIzol, followed by Qiagen clean-up.

treatment_protocol: Specimens are frozen in RNALater and stored at -80 oC until use.

tag: patient

value: Kidney transplant

tag: protocol

value: 1 year surveillance biopsy

tag: phenotype

value: Non-Progressor

tag: cohort

value: Discovery


title: 12m_D_NP_85 [rGen01-085]

description:
replicate 1
rGen01-085


title: 12m_D_NP_84 [rGen01-084]

description:
replicate 1
rGen01-084


title: 12m_D_NP_87 [rGen01-087]

description:
replicate 1
rGen01-087


title: PRO301A313_S80_L003 H. poly infected enteric glia, rep 3

type: SRA

city: London

first: Vassilis

last: Pachnis

address: 1 Midland Rd

department: Development and Homeostasis of the Nervous System Laboratory

country: United Kingdom

institute: The Francis Crick Institute

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A313_S80_L003

library_source: transcriptomic

data_processing:
Nextera adapter sequences were removed from reads using Cutadapt (version 1.18).
Reads were aligned to the Ensembl GRCm38 genome using STAR (version 2.5.2a).
Gene counts were obtained using the featureCounts program (from Subread version 1.6.4).
Quality control, normalisation and downstream analysis were performed using the software Seurat (version 3.1.1).
Cells expressing more than 2000 genes and less than 10 percent mitochondrial reads were retained for further analysis. Contaminating macrophages (n=7) were removed based on the expression of Itgam (> 10 counts), and contaminating neurons (n=95) were removed based on expression of Elavl4 (> 30 counts). Genes detected in fewer than 3 cells or with total counts < 10 were omitted from further analysis. The dimension of the final data matrix was 18643 genes by 217 cells (134 cells from naïve mice and 83 from H. poly infected mice).
Counts were normalized to ten thousand counts per cell, natural-log transformed using log1p, and scaled.
Highly variable genes were identified using Seurat, and the top 1000 used for dimensionality reduction and clustering. The first 4 principal components were selected as input for dimensionality reduction using the UMAP algorithm and Louvain clustering at a resolution of 0.1.
Genome_build: GrCM38
Supplementary_files_format_and_content: Count matrices in .tsv format. Seurat object saved as an .rds file.

organism: Mus musculus

source_name: Enteric glia

growth_protocol: Mice used in this study were maintained according to standard practices and all procedures were approved by The Francis Crick Institute Animal Ethics Committee and conformed to UK Home Office requirements (ASPA 1986) and the ARRIVE guidelines.

extract_protocol:
For isolation of EGCs, the longitudinal smooth muscle layer and associated myenteric plexus were peeled off the wall of the smal intestineand subjected to enzymatic digestion to prepare a single-cell suspension. Single-cell suspensions were subjected to fluorescence activated cell sorting and live EGCs were isolated based on tdT expression DAPI exclusion. 200-1000 cells were loaded into a Fluidigm C1 Single Cell Auto Prep IFC for mRNA-seq for use with the Fluidigm C1 system. After the cell load program cells were imagined using the JuliStage to identify wells that contain 1 single cell.
The SMART-Seq v4 Ultra Low Input RNA Kit for the Fluidigm C1 System, IFCs was used to reverse transcribe and amplify cDNA. cDNA was quantified using the Glomax (Promega). Libraries were prepared from cDNA generated from single cells using the Nextera XT kit from Illumina. Final libraries were pooled and sequenced on the HiSeq 4000.

treatment_protocol: All mice were injected with tamoxifen 24 hours prior single cell isolation and some mice were infected with H. poly 7 days prior single cell isolation.

tag: Stage

value: Adult

tag: strain

tag: disease state

value: Infected


title: 12m_D_NP_79 [rGen01-079]

description:
replicate 1
rGen01-079


title: PRO301A310_S190_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A310_S190_L003


title: 12m_D_NP_74 [rGen01-074]

description:
replicate 1
rGen01-074


title: PRO301A307_S176_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A307_S176_L003


title: 12m_D_NP_86 [rGen01-086]

description:
replicate 1
rGen01-086


title: 12m_D_NP_77 [rGen01-077]

description:
replicate 1
rGen01-077


title: PRO301A308_S17_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A308_S17_L003


title: 12m_D_NP_72 [rGen01-072]

description:
replicate 1
rGen01-072


title: 12m_D_NP_73 [rGen01-073]

description:
replicate 1
rGen01-073


title: 12m_D_NP_71 [rGen01-071]

description:
replicate 1
rGen01-071


title: PRO301A305_S151_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A305_S151_L003


title: 12m_D_NP_76 [rGen01-076]

description:
replicate 1
rGen01-076


title: PRO301A304_S118_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A304_S118_L003


title: PRO301A303_S111_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A303_S111_L003


title: PRO301A301_S37_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A301_S37_L003


title: PRO301A299_S102_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A299_S102_L003


title: PRO301A298_S153_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A298_S153_L003


title: PRO301A297_S189_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A297_S189_L003


title: 12m_D_NP_69 [rGen01-069]

description:
replicate 1
rGen01-069


title: 12m_D_NP_70 [rGen01-070]

description:
replicate 1
rGen01-070


title: PRO301A296_S135_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A296_S135_L003


title: 12m_D_NP_66 [rGen01-066]

description:
replicate 1
rGen01-066


title: 12m_D_NP_64 [rGen01-064]

description:
replicate 1
rGen01-064


title: PRO301A293_S206_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A293_S206_L003


title: 12m_D_NP_65 [rGen01-065]

description:
replicate 1
rGen01-065


title: PRO301A294_S75_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A294_S75_L003


title: 12m_D_NP_63 [rGen01-063]

description:
replicate 1
rGen01-063


title: 12m_D_NP_67 [rGen01-067]

description:
replicate 1
rGen01-067


title: PRO301A291_S163_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A291_S163_L003


title: 12m_D_NP_75 [rGen01-075]

description:
replicate 1
rGen01-075


title: 12m_D_NP_68 [rGen01-068]

description:
replicate 1
rGen01-068


title: PRO301A290_S150_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A290_S150_L003


title: 12m_D_NP_61 [rGen01-061]

description:
replicate 1
rGen01-061


title: 12m_D_NP_62 [rGen01-062]

description:
replicate 1
rGen01-062


title: 12m_D_NP_60 [rGen01-060]

description:
replicate 1
rGen01-060


title: PRO301A288_S159_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A288_S159_L003


title: 12m_D_NP_59 [rGen01-059]

description:
replicate 1
rGen01-059


title: 12m_D_NP_57 [rGen01-057]

description:
replicate 1
rGen01-057


title: PRO301A292_S45_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A292_S45_L003


title: PRO301A286_S36_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A286_S36_L003


title: 12m_D_NP_56 [rGen01-056]

description:
replicate 1
rGen01-056


title: PRO301A280_S187_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A280_S187_L003


title: 12m_D_NP_55 [rGen01-055]

description:
replicate 1
rGen01-055


title: PRO301A289_S120_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A289_S120_L003


title: PRO301A260_S88_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A260_S88_L003


title: PRO301A261_S42_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A261_S42_L003


title: PRO301A257_S147_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A257_S147_L003


title: PRO301A266_S85_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A266_S85_L003


title: PRO301A255_S77_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A255_S77_L003


title: 12m_D_NP_58 [rGen01-058]

description:
replicate 1
rGen01-058


title: PRO301A254_S165_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A254_S165_L003


title: 12m_D_NP_52 [rGen01-052]

description:
replicate 1
rGen01-052


title: PRO301A244_S181_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A244_S181_L003


title: 12m_D_NP_49 [rGen01-049]

description:
replicate 1
rGen01-049


title: PRO301A238_S89_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A238_S89_L003


title: 12m_D_NP_46 [rGen01-046]

description:
replicate 1
rGen01-046


title: PRO301A231_S59_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A231_S59_L003


title: PRO301A230_S188_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A230_S188_L003


title: 12m_D_NP_47 [rGen01-047]

description:
replicate 1
rGen01-047


title: 12m_D_NP_45 [rGen01-045]

description:
replicate 1
rGen01-045


title: 12m_D_NP_54 [rGen01-054]

description:
replicate 1
rGen01-054


title: 12m_D_NP_53 [rGen01-053]

description:
replicate 1
rGen01-053


title: 12m_D_NP_44 [rGen01-044]

description:
replicate 1
rGen01-044


title: PRO301A227_S125_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A227_S125_L003


title: 12m_D_NP_51 [rGen01-051]

description:
replicate 1
rGen01-051


title: PRO301A226_S107_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A226_S107_L003


title: 12m_D_NP_48 [rGen01-048]

description:
replicate 1
rGen01-048


title: PRO301A229_S31_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A229_S31_L003


title: 12m_D_NP_43 [rGen01-043]

description:
replicate 1
rGen01-043


title: 12m_D_NP_42 [rGen01-042]

description:
replicate 1
rGen01-042


title: 12m_D_NP_41 [rGen01-041]

description:
replicate 1
rGen01-041


title: PRO301A214_S185_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A214_S185_L003


title: PRO301A213_S172_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A213_S172_L003


title: PRO301A211_S128_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A211_S128_L003


title: PRO301A212_S178_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A212_S178_L003


title: PRO301A221_S104_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A221_S104_L003


title: PRO301A207_S116_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A207_S116_L003


title: PRO301A204_S19_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A204_S19_L003


title: 12m_D_NP_37 [rGen01-037]

description:
replicate 1
rGen01-037


title: 12m_D_NP_34 [rGen01-034]

description:
replicate 1
rGen01-034


title: 12m_D_NP_40 [rGen01-040]

description:
replicate 1
rGen01-040


title: 12m_D_NP_35 [rGen01-035]

description:
replicate 1
rGen01-035


title: 12m_D_NP_38 [rGen01-038]

description:
replicate 1
rGen01-038


title: 12m_D_NP_39 [rGen01-039]

description:
replicate 1
rGen01-039


title: 12m_D_NP_32 [rGen01-032]

description:
replicate 1
rGen01-032


title: 12m_D_NP_31 [rGen01-031]

description:
replicate 1
rGen01-031


title: PRO301A199_S8_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A199_S8_L003


title: 12m_D_NP_30 [rGen01-030]

description:
replicate 1
rGen01-030


title: PRO301A195_S64_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A195_S64_L003


title: 12m_D_NP_36 [rGen01-036]

description:
replicate 1
rGen01-036


title: PRO301A194_S26_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A194_S26_L003


title: PRO301A384_S34_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A384_S34_L003


title: PRO301A206_S133_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A206_S133_L003


title: PRO301A202_S83_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A202_S83_L003


title: PRO301A382_S185_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A382_S185_L003


title: PRO301A383_S73_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A383_S73_L003


title: 12m_D_NP_28 [rGen01-028]

description:
replicate 1
rGen01-028


title: 12m_D_NP_24 [rGen01-024]

description:
replicate 1
rGen01-024


title: 12m_D_NP_33 [rGen01-033]

description:
replicate 1
rGen01-033


title: 12m_D_NP_26 [rGen01-026]

description:
replicate 1
rGen01-026


title: 12m_D_NP_23 [rGen01-023]

description:
replicate 1
rGen01-023


title: 12m_D_NP_22 [rGen01-022]

description:
replicate 1
rGen01-022


title: 12m_D_NP_27 [rGen01-027]

description:
replicate 1
rGen01-027


title: PRO301A380_S22_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A380_S22_L003


title: 12m_D_NP_29 [rGen01-029]

description:
replicate 1
rGen01-029


title: PRO301A378_S192_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A378_S192_L003


title: 12m_D_NP_21 [rGen01-021]

description:
replicate 1
rGen01-021


title: 12m_D_NP_25 [rGen01-025]

description:
replicate 1
rGen01-025


title: PRO301A377_S141_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A377_S141_L003


title: PRO301A376_S113_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A376_S113_L003


title: PRO301A375_S45_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A375_S45_L003


title: PRO301A379_S166_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A379_S166_L003


title: PRO301A374_S49_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A374_S49_L003


title: PRO301A268_S11_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A268_S11_L003


title: 12m_D_NP_18 [rGen01-018]

description:
replicate 1
rGen01-018


title: PRO301A371_S130_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A371_S130_L003


title: 12m_D_NP_19 [rGen01-019]

description:
replicate 1
rGen01-019


title: PRO301A370_S144_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A370_S144_L003


title: 12m_D_NP_17 [rGen01-017]

description:
replicate 1
rGen01-017


title: 12m_D_NP_15 [rGen01-015]

description:
replicate 1
rGen01-015


title: 12m_D_NP_20 [rGen01-020]

description:
replicate 1
rGen01-020


title: 12m_D_NP_16 [rGen01-016]

description:
replicate 1
rGen01-016


title: PRO301A367_S106_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A367_S106_L003


title: 12m_D_NP_12 [rGen01-012]

description:
replicate 1
rGen01-012


title: 12m_D_NP_11 [rGen01-011]

description:
replicate 1
rGen01-011


title: 12m_D_NP_14 [rGen01-014]

description:
replicate 1
rGen01-014


title: PRO301A364_S108_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A364_S108_L003


title: PRO301A363_S27_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A363_S27_L003


title: PRO301A196_S74_L003 H. poly infected enteric glia, rep 3

description:
H. poly infected enteric glia, rep 3
H. poly 3
PRO301A196_S74_L003


title: PRO301A362_S122_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A362_S122_L003


title: PRO301A359_S51_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A359_S51_L003


title: PRO301A360_S114_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A360_S114_L003


title: PRO301A361_S186_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A361_S186_L003


title: 12m_D_NP_7 [rGen01-007]

description:
replicate 1
rGen01-007


title: PRO301A357_S1_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A357_S1_L003


title: 12m_D_NP_5 [rGen01-005]

description:
replicate 1
rGen01-005


title: PRO301A355_S59_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A355_S59_L003


title: PRO301A356_S154_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A356_S154_L003


title: PRO301A365_S37_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A365_S37_L003


title: 12m_D_NP_50 [rGen01-050]

description:
replicate 1
rGen01-050


title: 12m_D_NP_13 [rGen01-013]

description:
replicate 1
rGen01-013


title: PRO301A354_S168_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A354_S168_L003


title: 12m_D_NP_10 [rGen01-010]

description:
replicate 1
rGen01-010


title: PRO301A351_S156_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A351_S156_L003


title: PRO301A353_S89_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A353_S89_L003


title: 12m_D_NP_1 [rGen01-001]

description:
replicate 1
rGen01-001


title: 12m_D_NP_3 [rGen01-003]

description:
replicate 1
rGen01-003


title: PRO301A352_S68_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A352_S68_L003


title: 12m_D_NP_9 [rGen01-009]

description:
replicate 1
rGen01-009


title: PRO301A350_S96_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A350_S96_L003


title: 12m_D_NP_6 [rGen01-006]

description:
replicate 1
rGen01-006


title: PRO301A348_S69_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A348_S69_L003


title: 12m_V_NP_227 [Gen04-44-088]

description:
replicate 1
Gen04-44-088

value: Validation


title: PRO301A347_S86_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A347_S86_L003


title: 12m_V_NP_226 [Gen04-44-085]

description:
replicate 1
Gen04-44-085


title: PRO301A346_S162_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A346_S162_L003


title: 12m_V_NP_224 [Gen04-44-074]

description:
replicate 1
Gen04-44-074


title: PRO301A344_S44_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A344_S44_L003


title: PRO301A345_S172_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A345_S172_L003


title: 12m_V_NP_225 [Gen04-44-077]

description:
replicate 1
Gen04-44-077


title: 12m_D_NP_4 [rGen01-004]

description:
replicate 1
rGen01-004


title: PRO301A343_S70_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A343_S70_L003


title: PRO301A342_S137_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A342_S137_L003


title: PRO301A341_S75_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A341_S75_L003


title: PRO301A340_S46_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A340_S46_L003


title: PRO301A337_S21_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A337_S21_L003


title: PRO301A339_S91_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A339_S91_L003


title: 12m_V_NP_216 [Gen04-44-053]

description:
replicate 1
Gen04-44-053


title: 12m_V_NP_221 [Gen04-44-066]

description:
replicate 1
Gen04-44-066


title: 12m_V_NP_219 [Gen04-44-057]

description:
replicate 1
Gen04-44-057


title: PRO301A336_S140_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A336_S140_L003


title: 12m_D_NP_2 [rGen01-002]

description:
replicate 1
rGen01-002


title: 12m_V_NP_214 [Gen04-44-050]

description:
replicate 1
Gen04-44-050


title: PRO301A331_S109_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A331_S109_L003


title: PRO301A334_S25_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A334_S25_L003


title: PRO301A329_S177_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A329_S177_L003


title: 12m_V_NP_217 [Gen04-44-054]

description:
replicate 1
Gen04-44-054


title: PRO301A325_S16_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A325_S16_L003


title: PRO301A330_S163_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A330_S163_L003


title: PRO301A328_S40_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A328_S40_L003


title: 12m_V_NP_212 [Gen04-44-047]

description:
replicate 1
Gen04-44-047


title: 12m_V_NP_210 [Gen04-44-045]

description:
replicate 1
Gen04-44-045


title: PRO301A323_S61_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A323_S61_L003


title: PRO301A324_S10_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A324_S10_L003


title: 12m_V_NP_211 [Gen04-44-046]

description:
replicate 1
Gen04-44-046


title: 12m_V_NP_209 [Gen04-44-043]

description:
replicate 1
Gen04-44-043


title: 12m_V_NP_208 [Gen04-44-041]

description:
replicate 1
Gen04-44-041


title: 12m_V_NP_207 [Gen04-44-040]

description:
replicate 1
Gen04-44-040


title: PRO301A322_S169_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A322_S169_L003


title: 12m_V_NP_215 [Gen04-44-051]

description:
replicate 1
Gen04-44-051


title: 12m_V_NP_206 [Gen04-44-038]

description:
replicate 1
Gen04-44-038


title: 12m_V_NP_213 [Gen04-44-049]

description:
replicate 1
Gen04-44-049


title: 12m_V_NP_205 [Gen04-44-037]

description:
replicate 1
Gen04-44-037


title: 12m_V_NP_218 [Gen04-44-055]

description:
replicate 1
Gen04-44-055


title: PRO301A316_S123_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A316_S123_L003


title: PRO301A317_S50_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A317_S50_L003


title: PRO301A315_S24_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A315_S24_L003


title: PRO301A313_S125_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A313_S125_L003


title: PRO301A321_S11_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A321_S11_L003


title: PRO301A310_S97_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A310_S97_L003


title: PRO301A307_S112_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A307_S112_L003


title: PRO301A305_S98_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A305_S98_L003


title: PRO301A308_S56_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A308_S56_L003


title: PRO301A304_S62_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A304_S62_L003


title: PRO301A301_S79_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A301_S79_L003


title: PRO301A303_S43_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A303_S43_L003


title: PRO301A298_S107_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A298_S107_L003


title: PRO301A296_S167_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A296_S167_L003


title: PRO301A297_S139_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A297_S139_L003


title: PRO301A299_S4_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A299_S4_L003


title: PRO301A294_S131_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A294_S131_L003


title: 12m_V_NP_203 [Gen04-44-034]

description:
replicate 1
Gen04-44-034


title: PRO301A293_S190_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A293_S190_L003


title: 12m_V_NP_204 [Gen04-44-036]

description:
replicate 1
Gen04-44-036


title: 12m_V_NP_202 [Gen04-44-033]

description:
replicate 1
Gen04-44-033


title: 12m_V_NP_200 [Gen04-44-030]

description:
replicate 1
Gen04-44-030


title: 12m_V_NP_201 [Gen04-44-031]

description:
replicate 1
Gen04-44-031


title: 12m_V_NP_223 [Gen04-44-070]

description:
replicate 1
Gen04-44-070


title: 12m_V_NP_195 [Gen04-44-007]

description:
replicate 1
Gen04-44-007


title: 12m_V_NP_196 [Gen04-44-018]

description:
replicate 1
Gen04-44-018


title: 12m_V_NP_192 [Gen04-06-048]

description:
replicate 1
Gen04-06-048


title: 12m_V_NP_186 [Gen04-06-031]

description:
replicate 1
Gen04-06-031


title: 12m_V_NP_197 [Gen04-44-020]

description:
replicate 1
Gen04-44-020


title: PRO301A291_S121_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A291_S121_L003


title: 12m_V_NP_188 [Gen04-06-035]

description:
replicate 1
Gen04-06-035


title: PRO301A292_S143_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A292_S143_L003


title: 12m_V_NP_193 [Gen04-44-001]

description:
replicate 1
Gen04-44-001


title: PRO301A290_S129_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A290_S129_L003


title: PRO301A289_S17_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A289_S17_L003


title: 12m_V_NP_198 [Gen04-44-027]

description:
replicate 1
Gen04-44-027


title: 12m_V_NP_194 [Gen04-44-002]

description:
replicate 1
Gen04-44-002


title: PRO301A288_S159_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A288_S159_L003


title: 12m_V_NP_199 [Gen04-44-029]

description:
replicate 1
Gen04-44-029


title: 12m_V_NP_187 [Gen04-06-032]

description:
replicate 1
Gen04-06-032


title: 12m_V_NP_190 [Gen04-06-046]

description:
replicate 1
Gen04-06-046


title: 12m_V_NP_184 [Gen04-06-028]

description:
replicate 1
Gen04-06-028


title: 12m_V_NP_191 [Gen04-06-047]

description:
replicate 1
Gen04-06-047


title: PRO301A286_S99_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A286_S99_L003


title: PRO301A266_S19_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A266_S19_L003


title: PRO301A268_S36_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A268_S36_L003


title: PRO301A280_S146_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A280_S146_L003


title: 12m_V_NP_183 [Gen04-06-026]

description:
replicate 1
Gen04-06-026


title: 12m_D_NP_8 [rGen01-008]

description:
replicate 1
rGen01-008


title: 12m_V_NP_222 [Gen04-44-067]

description:
replicate 1
Gen04-44-067


title: 12m_V_NP_185 [Gen04-06-029]

description:
replicate 1
Gen04-06-029


title: 12m_V_NP_189 [Gen04-06-042]

description:
replicate 1
Gen04-06-042


title: PRO301A257_S20_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A257_S20_L003


title: PRO301A260_S65_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A260_S65_L003


title: PRO301A255_S155_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A255_S155_L003


title: PRO301A254_S152_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A254_S152_L003


title: 12m_V_NP_182 [Gen04-06-022]

description:
replicate 1
Gen04-06-022


title: PRO301A244_S148_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A244_S148_L003


title: PRO301A231_S77_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A231_S77_L003


title: 12m_V_NP_181 [Gen04-06-021]

description:
replicate 1
Gen04-06-021


title: 12m_V_NP_180 [Gen04-06-020]

description:
replicate 1
Gen04-06-020


title: 12m_V_NP_178 [Gen04-06-017]

description:
replicate 1
Gen04-06-017


title: PRO301A261_S57_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A261_S57_L003


title: PRO301A230_S142_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A230_S142_L003


title: 12m_V_NP_175 [Gen04-06-007]

description:
replicate 1
Gen04-06-007


title: PRO301A229_S173_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A229_S173_L003


title: 12m_V_NP_220 [Gen04-44-064]

description:
replicate 1
Gen04-44-064


title: 12m_V_NP_177 [Gen04-06-013]

description:
replicate 1
Gen04-06-013


title: PRO301A227_S118_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A227_S118_L003


title: 12m_V_NP_174 [Gen04-06-005]

description:
replicate 1
Gen04-06-005


title: PRO301A221_S138_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A221_S138_L003


title: 12m_V_NP_172 [Gen04-06-001]

description:
replicate 1
Gen04-06-001


title: PRO301A214_S92_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A214_S92_L003


title: 12m_V_NP_176 [Gen04-06-009]

description:
replicate 1
Gen04-06-009


title: 12m_V_NP_173 [Gen04-06-003]

description:
replicate 1
Gen04-06-003


title: 12m_V_NP_165 [Gen04-05-232]

description:
replicate 1
Gen04-05-232


title: 12m_V_NP_167 [Gen04-05-241]

description:
replicate 1
Gen04-05-241


title: PRO301A211_S176_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A211_S176_L003


title: PRO301A207_S110_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A207_S110_L003


title: PRO301A212_S134_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A212_S134_L003


title: 12m_V_NP_168 [Gen04-05-242]

description:
replicate 1
Gen04-05-242


title: 12m_V_NP_169 [Gen04-05-243]

description:
replicate 1
Gen04-05-243


title: 12m_V_NP_179 [Gen04-06-018]

description:
replicate 1
Gen04-06-018


title: PRO301A226_S67_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A226_S67_L003


title: PRO301A238_S80_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A238_S80_L003


title: PRO301A206_S135_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A206_S135_L003


title: PRO301A213_S88_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A213_S88_L003


title: PRO301A204_S194_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A204_S194_L003


title: 12m_V_NP_170 [Gen04-05-244]

description:
replicate 1
Gen04-05-244


title: 12m_V_NP_171 [Gen04-05-245]

description:
replicate 1
Gen04-05-245


title: 12m_V_NP_166 [Gen04-05-238]

description:
replicate 1
Gen04-05-238


title: 12m_V_NP_162 [Gen04-05-228]

description:
replicate 1
Gen04-05-228


title: 12m_V_NP_158 [Gen04-05-222]

description:
replicate 1
Gen04-05-222


title: 12m_V_NP_159 [Gen04-05-223]

description:
replicate 1
Gen04-05-223


title: 12m_V_NP_161 [Gen04-05-227]

description:
replicate 1
Gen04-05-227


title: 12m_V_NP_160 [Gen04-05-226]

description:
replicate 1
Gen04-05-226


title: 12m_V_NP_164 [Gen04-05-230]

description:
replicate 1
Gen04-05-230


title: 12m_V_NP_155 [Gen04-05-215]

description:
replicate 1
Gen04-05-215


title: 12m_V_NP_153 [Gen04-05-212]

description:
replicate 1
Gen04-05-212


title: PRO301A199_S184_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A199_S184_L003


title: 12m_V_NP_156 [Gen04-05-217]

description:
replicate 1
Gen04-05-217


title: PRO301A95_S106_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A95_S106_L004


title: PRO301A202_S126_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A202_S126_L003


title: PRO301A194_S35_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A194_S35_L003


title: PRO301A9_S103_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A9_S103_L004


title: PRO301A196_S171_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A196_S171_L003


title: PRO301A96_S107_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A96_S107_L004


title: PRO301A195_S72_L003 H. poly infected enteric glia, rep 2

description:
H. poly infected enteric glia, rep 2
H. poly 2
PRO301A195_S72_L003


title: PRO301A98_S108_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A98_S108_L004


title: 12m_V_NP_149 [Gen04-05-207]

description:
replicate 1
Gen04-05-207


title: 12m_V_NP_147 [Gen04-05-205]

description:
replicate 1
Gen04-05-205


title: 12m_V_NP_150 [Gen04-05-208]

description:
replicate 1
Gen04-05-208


title: 12m_V_NP_151 [Gen04-05-210]

description:
replicate 1
Gen04-05-210


title: 12m_V_NP_163 [Gen04-05-229]

description:
replicate 1
Gen04-05-229


title: 12m_V_NP_154 [Gen04-05-214]

description:
replicate 1
Gen04-05-214


title: PRO301A93_S105_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A93_S105_L004


title: PRO301A90_S104_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A90_S104_L004


title: 12m_V_NP_146 [Gen04-05-204]

description:
replicate 1
Gen04-05-204


title: 12m_V_NP_148 [Gen04-05-206]

description:
replicate 1
Gen04-05-206


title: PRO301A88_S101_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A88_S101_L004


title: PRO301A89_S102_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A89_S102_L004


title: 12m_V_NP_152 [Gen04-05-211]

description:
replicate 1
Gen04-05-211


title: 12m_V_NP_144 [Gen04-05-201]

description:
replicate 1
Gen04-05-201


title: PRO301A87_S100_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A87_S100_L004


title: 12m_V_NP_157 [Gen04-05-220]

description:
replicate 1
Gen04-05-220


title: PRO301A83_S98_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A83_S98_L004


title: PRO301A86_S99_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A86_S99_L004


title: PRO301A80_S95_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A80_S95_L004


title: PRO301A81_S96_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A81_S96_L004


title: PRO301A82_S97_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A82_S97_L004


title: 12m_V_NP_145 [Gen04-05-202]

description:
replicate 1
Gen04-05-202


title: PRO301A7_S87_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A7_S87_L004


title: PRO301A77_S92_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A77_S92_L004


title: PRO301A78_S93_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A78_S93_L004


title: 12m_V_NP_140 [Gen04-05-191]

description:
replicate 1
Gen04-05-191


title: 12m_V_NP_142 [Gen04-05-196]

description:
replicate 1
Gen04-05-196


title: PRO301A75_S91_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A75_S91_L004


title: 12m_V_NP_137 [Gen04-05-186]

description:
replicate 1
Gen04-05-186


title: PRO301A74_S90_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A74_S90_L004


title: 12m_V_NP_139 [Gen04-05-190]

description:
replicate 1
Gen04-05-190


title: PRO301A79_S94_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A79_S94_L004


title: 12m_V_NP_135 [Gen04-05-178]

description:
replicate 1
Gen04-05-178


title: 12m_V_NP_141 [Gen04-05-192]

description:
replicate 1
Gen04-05-192


title: PRO301A66_S86_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A66_S86_L004


title: PRO301A72_S88_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A72_S88_L004


title: PRO301A6_S82_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A6_S82_L004


title: 12m_V_NP_136 [Gen04-05-184]

description:
replicate 1
Gen04-05-184


title: 12m_V_NP_143 [Gen04-05-200]

description:
replicate 1
Gen04-05-200


title: 12m_V_NP_138 [Gen04-05-188]

description:
replicate 1
Gen04-05-188


title: 12m_V_NP_133 [Gen04-05-174]

description:
replicate 1
Gen04-05-174


title: 12m_V_NP_131 [Gen04-05-172]

description:
replicate 1
Gen04-05-172


title: 12m_V_NP_134 [Gen04-05-177]

description:
replicate 1
Gen04-05-177


title: 12m_V_NP_130 [Gen04-05-170]

description:
replicate 1
Gen04-05-170


title: 12m_V_NP_132 [Gen04-05-173]

description:
replicate 1
Gen04-05-173


title: PRO301A64_S85_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A64_S85_L004


title: 12m_V_NP_127 [Gen04-05-166]

description:
replicate 1
Gen04-05-166


title: 12m_V_NP_128 [Gen04-05-167]

description:
replicate 1
Gen04-05-167


title: 12m_V_NP_126 [Gen04-05-162]

description:
replicate 1
Gen04-05-162


title: 12m_V_NP_129 [Gen04-05-168]

description:
replicate 1
Gen04-05-168


title: 12m_V_NP_125 [Gen04-05-158]

description:
replicate 1
Gen04-05-158


title: PRO301A63_S84_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A63_S84_L004


title: PRO301A73_S89_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A73_S89_L004


title: PRO301A55_S79_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A55_S79_L004


title: PRO301A56_S80_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A56_S80_L004


title: PRO301A58_S81_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A58_S81_L004


title: 12m_V_NP_123 [Gen04-05-155]

description:
replicate 1
Gen04-05-155


title: PRO301A62_S83_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A62_S83_L004


title: PRO301A52_S76_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A52_S76_L004


title: PRO301A54_S78_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A54_S78_L004


title: PRO301A53_S77_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A53_S77_L004


title: PRO301A51_S75_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A51_S75_L004


title: PRO301A50_S74_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A50_S74_L004


title: PRO301A4_S70_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A4_S70_L004


title: 12m_V_NP_118 [Gen04-05-150]

description:
replicate 1
Gen04-05-150


title: PRO301A47_S73_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A47_S73_L004


title: PRO301A44_S72_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A44_S72_L004


title: PRO301A41_S71_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A41_S71_L004


title: PRO301A39_S69_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A39_S69_L004


title: PRO301A38_S68_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A38_S68_L004


title: 12m_V_NP_122 [Gen04-05-154]

description:
replicate 1
Gen04-05-154


title: PRO301A35_S67_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A35_S67_L004


title: PRO301A34_S66_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A34_S66_L004


title: PRO301A30_S65_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A30_S65_L004


title: 12m_V_NP_116 [Gen04-05-139]

description:
replicate 1
Gen04-05-139


title: 12m_V_NP_121 [Gen04-05-153]

description:
replicate 1
Gen04-05-153


title: 12m_V_NP_117 [Gen04-05-144]

description:
replicate 1
Gen04-05-144


title: 12m_V_NP_119 [Gen04-05-151]

description:
replicate 1
Gen04-05-151


title: 12m_V_NP_124 [Gen04-05-156]

description:
replicate 1
Gen04-05-156


title: PRO301A29_S64_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A29_S64_L004


title: 12m_V_NP_111 [Gen04-05-133]

description:
replicate 1
Gen04-05-133


title: 12m_V_NP_120 [Gen04-05-152]

description:
replicate 1
Gen04-05-152


title: 12m_V_NP_114 [Gen04-05-136]

description:
replicate 1
Gen04-05-136


title: 12m_V_NP_112 [Gen04-05-134]

description:
replicate 1
Gen04-05-134


title: 12m_V_NP_109 [Gen04-05-131]

description:
replicate 1
Gen04-05-131


title: 12m_V_NP_108 [Gen04-05-130]

description:
replicate 1
Gen04-05-130


title: PRO301A28_S63_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A28_S63_L004


title: PRO301A27_S62_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A27_S62_L004


title: 12m_V_NP_107 [Gen04-05-129]

description:
replicate 1
Gen04-05-129


title: PRO301A22_S61_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A22_S61_L004


title: 12m_V_NP_106 [Gen04-05-128]

description:
replicate 1
Gen04-05-128


title: 12m_V_NP_110 [Gen04-05-132]

description:
replicate 1
Gen04-05-132


title: 12m_V_NP_105 [Gen04-05-126]

description:
replicate 1
Gen04-05-126


title: PRO301A20_S60_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A20_S60_L004


title: 12m_V_NP_115 [Gen04-05-137]

description:
replicate 1
Gen04-05-137


title: PRO301A18_S57_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A18_S57_L004


title: 12m_V_NP_113 [Gen04-05-135]

description:
replicate 1
Gen04-05-135


title: PRO301A187_S58_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A187_S58_L004


title: 12m_V_NP_102 [Gen04-05-123]

description:
replicate 1
Gen04-05-123


title: 12m_V_NP_101 [Gen04-05-120]

description:
replicate 1
Gen04-05-120


title: 12m_V_NP_103 [Gen04-05-124]

description:
replicate 1
Gen04-05-124


title: 12m_V_NP_104 [Gen04-05-125]

description:
replicate 1
Gen04-05-125


title: PRO301A16_S50_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A16_S50_L004


title: PRO301A169_S55_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A169_S55_L004


title: PRO301A165_S54_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A165_S54_L004


title: PRO301A163_S53_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A163_S53_L004


title: 12m_V_NP_100 [Gen04-05-119]

description:
replicate 1
Gen04-05-119


title: 12m_V_NP_99 [Gen04-05-117]

description:
replicate 1
Gen04-05-117


title: 12m_V_NP_97 [Gen04-05-115]

description:
replicate 1
Gen04-05-115


title: PRO301A161_S52_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A161_S52_L004


title: 12m_V_NP_98 [Gen04-05-116]

description:
replicate 1
Gen04-05-116


title: PRO301A160_S51_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A160_S51_L004


title: PRO301A15_S43_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A15_S43_L004


title: PRO301A158_S49_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A158_S49_L004


title: PRO301A176_S56_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A176_S56_L004


title: PRO301A156_S48_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A156_S48_L004


title: PRO301A154_S47_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A154_S47_L004


title: PRO301A152_S46_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A152_S46_L004


title: PRO301A151_S45_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A151_S45_L004


title: 12m_V_NP_93 [Gen04-05-108]

description:
replicate 1
Gen04-05-108


title: 12m_V_NP_96 [Gen04-05-114]

description:
replicate 1
Gen04-05-114


title: 12m_V_NP_95 [Gen04-05-111]

description:
replicate 1
Gen04-05-111


title: 12m_V_NP_89 [Gen04-05-098]

description:
replicate 1
Gen04-05-098


title: 12m_V_NP_92 [Gen04-05-102]

description:
replicate 1
Gen04-05-102


title: PRO301A14_S38_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A14_S38_L004


title: 12m_V_NP_87 [Gen04-05-091]

description:
replicate 1
Gen04-05-091


title: 12m_V_NP_88 [Gen04-05-093]

description:
replicate 1
Gen04-05-093


title: PRO301A149_S42_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A149_S42_L004


title: 12m_V_NP_86 [Gen04-05-083]

description:
replicate 1
Gen04-05-083


title: PRO301A150_S44_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A150_S44_L004


title: PRO301A148_S41_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A148_S41_L004


title: 12m_V_NP_91 [Gen04-05-101]

description:
replicate 1
Gen04-05-101


title: 12m_V_NP_94 [Gen04-05-110]

description:
replicate 1
Gen04-05-110


title: 12m_V_NP_84 [Gen04-05-080]

description:
replicate 1
Gen04-05-080


title: 12m_V_NP_85 [Gen04-05-081]

description:
replicate 1
Gen04-05-081


title: 12m_V_NP_90 [Gen04-05-100]

description:
replicate 1
Gen04-05-100


title: PRO301A146_S39_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A146_S39_L004


title: PRO301A134_S37_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A134_S37_L004


title: PRO301A124_S35_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A124_S35_L004


title: PRO301A12_S34_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A12_S34_L004


title: PRO301A147_S40_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A147_S40_L004


title: 12m_V_NP_81 [Gen04-05-074]

description:
replicate 1
Gen04-05-074


title: PRO301A13_S36_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A13_S36_L004


title: PRO301A117_S33_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A117_S33_L004


title: 12m_V_NP_80 [Gen04-05-073]

description:
replicate 1
Gen04-05-073


title: PRO301A116_S32_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A116_S32_L004


title: 12m_V_NP_83 [Gen04-05-079]

description:
replicate 1
Gen04-05-079


title: 12m_V_NP_82 [Gen04-05-078]

description:
replicate 1
Gen04-05-078


title: PRO301A115_S31_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A115_S31_L004


title: 12m_V_NP_79 [Gen04-05-071]

description:
replicate 1
Gen04-05-071


title: PRO301A10_S23_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A10_S23_L004


title: 12m_V_NP_76 [Gen04-05-060]

description:
replicate 1
Gen04-05-060


title: PRO301A112_S30_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A112_S30_L004


title: 12m_V_NP_75 [Gen04-05-052]

description:
replicate 1
Gen04-05-052


title: 12m_V_NP_73 [Gen04-05-047]

description:
replicate 1
Gen04-05-047


title: PRO301A109_S29_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A109_S29_L004


title: PRO301A107_S28_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A107_S28_L004


title: 12m_V_NP_74 [Gen04-05-050]

description:
replicate 1
Gen04-05-050


title: 12m_V_NP_77 [Gen04-05-061]

description:
replicate 1
Gen04-05-061


title: PRO301A106_S27_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A106_S27_L004


title: PRO301A105_S26_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A105_S26_L004


title: PRO301A102_S25_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A102_S25_L004


title: 12m_V_NP_78 [Gen04-05-066]

description:
replicate 1
Gen04-05-066


title: PRO301A101_S24_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A101_S24_L004


title: Sample_PRO472A382_S433_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A382_S433_L005

value: Naive


title: Sample_PRO472A381_S432_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A381_S432_L005


title: 12m_V_NP_71 [Gen04-05-043]

description:
replicate 1
Gen04-05-043


title: 12m_V_NP_65 [Gen04-05-028]

description:
replicate 1
Gen04-05-028


title: Sample_PRO472A378_S429_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A378_S429_L005


title: 12m_V_NP_67 [Gen04-05-033]

description:
replicate 1
Gen04-05-033


title: Sample_PRO472A380_S431_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A380_S431_L005


title: 12m_V_NP_69 [Gen04-05-038]

description:
replicate 1
Gen04-05-038


title: 12m_V_NP_72 [Gen04-05-046]

description:
replicate 1
Gen04-05-046


title: 12m_V_NP_70 [Gen04-05-040]

description:
replicate 1
Gen04-05-040


title: Sample_PRO472A376_S428_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A376_S428_L005


title: Sample_PRO472A375_S427_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A375_S427_L005


title: 12m_V_NP_61 [Gen04-05-021]

description:
replicate 1
Gen04-05-021


title: 12m_V_NP_64 [Gen04-05-027]

description:
replicate 1
Gen04-05-027


title: Sample_PRO472A379_S430_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A379_S430_L005


title: 12m_V_NP_66 [Gen04-05-030]

description:
replicate 1
Gen04-05-030


title: 12m_V_NP_68 [Gen04-05-035]

description:
replicate 1
Gen04-05-035


title: 12m_V_NP_63 [Gen04-05-025]

description:
replicate 1
Gen04-05-025


title: 12m_V_NP_58 [Gen04-05-017]

description:
replicate 1
Gen04-05-017


title: Sample_PRO472A368_S423_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A368_S423_L005


title: 12m_V_NP_59 [Gen04-05-019]

description:
replicate 1
Gen04-05-019


title: Sample_PRO472A367_S422_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A367_S422_L005


title: 12m_V_NP_57 [Gen04-05-015]

description:
replicate 1
Gen04-05-015


title: 12m_V_NP_56 [Gen04-05-013]

description:
replicate 1
Gen04-05-013


title: Sample_PRO472A373_S426_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A373_S426_L005


title: Sample_PRO472A365_S420_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A365_S420_L005


title: Sample_PRO472A357_S419_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A357_S419_L005


title: Sample_PRO472A366_S421_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A366_S421_L005


title: Sample_PRO472A350_S416_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A350_S416_L005


title: Sample_PRO472A355_S418_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A355_S418_L005


title: Sample_PRO472A369_S424_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A369_S424_L005


title: Sample_PRO472A354_S417_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A354_S417_L005


title: 12m_V_NP_55 [Gen04-05-011]

description:
replicate 1
Gen04-05-011


title: Sample_PRO472A372_S425_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A372_S425_L005


title: 12m_V_NP_60 [Gen04-05-020]

description:
replicate 1
Gen04-05-020


title: 12m_V_NP_53 [Gen04-05-007]

description:
replicate 1
Gen04-05-007


title: 12m_V_NP_62 [Gen04-05-023]

description:
replicate 1
Gen04-05-023


title: 12m_V_NP_54 [Gen04-05-010]

description:
replicate 1
Gen04-05-010


title: 12m_V_NP_52 [Gen04-05-006]

description:
replicate 1
Gen04-05-006


title: 12m_V_NP_50 [Gen04-05-004]

description:
replicate 1
Gen04-05-004


title: Sample_PRO472A349_S415_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A349_S415_L005


title: 12m_V_NP_51 [Gen04-05-005]

description:
replicate 1
Gen04-05-005


title: 12m_V_NP_49 [Gen04-05-003]

description:
replicate 1
Gen04-05-003


title: 12m_V_NP_47 [Gen04-05-001]

description:
replicate 1
Gen04-05-001


title: 12m_V_NP_45 [Gen04-02-109]

description:
replicate 1
Gen04-02-109


title: 12m_V_NP_48 [Gen04-05-002]

description:
replicate 1
Gen04-05-002


title: Sample_PRO472A347_S413_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A347_S413_L005


title: Sample_PRO472A345_S412_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A345_S412_L005


title: Sample_PRO472A343_S410_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A343_S410_L005


title: Sample_PRO472A339_S409_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A339_S409_L005


title: Sample_PRO472A348_S414_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A348_S414_L005


title: Sample_PRO472A344_S411_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A344_S411_L005


title: Sample_PRO472A336_S406_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A336_S406_L005


title: Sample_PRO472A337_S407_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A337_S407_L005


title: Sample_PRO472A335_S405_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A335_S405_L005


title: Sample_PRO472A334_S404_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A334_S404_L005


title: 12m_V_NP_46 [Gen04-02-110]

description:
replicate 1
Gen04-02-110


title: 12m_V_NP_40 [Gen04-02-101]

description:
replicate 1
Gen04-02-101


title: 12m_V_NP_41 [Gen04-02-102]

description:
replicate 1
Gen04-02-102


title: Sample_PRO472A333_S403_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A333_S403_L005


title: 12m_V_NP_36 [Gen04-02-095]

description:
replicate 1
Gen04-02-095


title: Sample_PRO472A332_S402_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A332_S402_L005


title: 12m_V_NP_42 [Gen04-02-105]

description:
replicate 1
Gen04-02-105


title: 12m_V_NP_38 [Gen04-02-098]

description:
replicate 1
Gen04-02-098


title: 12m_V_NP_39 [Gen04-02-099]

description:
replicate 1
Gen04-02-099


title: Sample_PRO472A331_S401_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A331_S401_L005


title: 12m_V_NP_43 [Gen04-02-106]

description:
replicate 1
Gen04-02-106


title: 12m_V_NP_37 [Gen04-02-097]

description:
replicate 1
Gen04-02-097


title: 12m_V_NP_33 [Gen04-02-077]

description:
replicate 1
Gen04-02-077


title: Sample_PRO472A330_S400_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A330_S400_L005


title: 12m_V_NP_35 [Gen04-02-093]

description:
replicate 1
Gen04-02-093


title: 12m_V_NP_34 [Gen04-02-087]

description:
replicate 1
Gen04-02-087


title: Sample_PRO472A338_S408_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A338_S408_L005


title: 12m_V_NP_31 [Gen04-02-074]

description:
replicate 1
Gen04-02-074


title: 12m_V_NP_32 [Gen04-02-076]

description:
replicate 1
Gen04-02-076


title: 12m_V_NP_30 [Gen04-02-072]

description:
replicate 1
Gen04-02-072


title: Sample_PRO472A324_S394_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A324_S394_L005


title: Sample_PRO472A326_S396_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A326_S396_L005


title: Sample_PRO472A328_S398_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A328_S398_L005


title: 12m_V_NP_26 [Gen04-02-062]

description:
replicate 1
Gen04-02-062


title: Sample_PRO472A327_S397_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A327_S397_L005


title: Sample_PRO472A325_S395_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A325_S395_L005


title: Sample_PRO472A321_S392_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A321_S392_L005


title: 12m_V_NP_27 [Gen04-02-067]

description:
replicate 1
Gen04-02-067


title: Sample_PRO472A329_S399_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A329_S399_L005


title: Sample_PRO472A313_S388_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A313_S388_L005


title: 12m_V_NP_28 [Gen04-02-068]

description:
replicate 1
Gen04-02-068


title: Sample_PRO472A314_S389_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A314_S389_L005


title: Sample_PRO472A318_S390_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A318_S390_L005


title: Sample_PRO472A308_S386_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A308_S386_L005


title: Sample_PRO472A323_S393_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A323_S393_L005


title: 12m_V_NP_24 [Gen04-02-059]

description:
replicate 1
Gen04-02-059


title: Sample_PRO472A311_S387_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A311_S387_L005


title: Sample_PRO472A320_S391_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A320_S391_L005


title: 12m_V_NP_23 [Gen04-02-047]

description:
replicate 1
Gen04-02-047


title: 12m_V_NP_25 [Gen04-02-061]

description:
replicate 1
Gen04-02-061


title: 12m_V_NP_29 [Gen04-02-069]

description:
replicate 1
Gen04-02-069


title: 12m_V_NP_20 [Gen04-02-044]

description:
replicate 1
Gen04-02-044


title: 12m_V_NP_22 [Gen04-02-046]

description:
replicate 1
Gen04-02-046


title: 12m_V_NP_19 [Gen04-02-042]

description:
replicate 1
Gen04-02-042


title: 12m_V_NP_15 [Gen04-02-033]

description:
replicate 1
Gen04-02-033


title: 12m_V_NP_21 [Gen04-02-045]

description:
replicate 1
Gen04-02-045


title: 12m_V_NP_18 [Gen04-02-037]

description:
replicate 1
Gen04-02-037


title: 12m_V_NP_17 [Gen04-02-036]

description:
replicate 1
Gen04-02-036


title: 12m_V_NP_16 [Gen04-02-035]

description:
replicate 1
Gen04-02-035


title: Sample_PRO472A303_S383_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A303_S383_L005


title: Sample_PRO472A304_S384_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A304_S384_L005


title: Sample_PRO472A302_S382_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A302_S382_L005


title: 12m_V_NP_14 [Gen04-02-030]

description:
replicate 1
Gen04-02-030


title: 12m_V_NP_44 [Gen04-02-108]

description:
replicate 1
Gen04-02-108


title: Sample_PRO472A298_S380_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A298_S380_L005


title: Sample_PRO472A307_S385_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A307_S385_L005


title: PRO301A2_S59_L004 H. poly infected enteric glia, rep 1

description:
H. poly infected enteric glia, rep 1
H. poly 1
PRO301A2_S59_L004


title: 12m_V_NP_13 [Gen04-02-027]

description:
replicate 1
Gen04-02-027


title: Sample_PRO472A293_S378_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A293_S378_L005


title: Sample_PRO472A289_S377_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A289_S377_L005


title: 12m_V_NP_11 [Gen04-02-025]

description:
replicate 1
Gen04-02-025


title: Sample_PRO472A301_S381_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A301_S381_L005


title: Sample_PRO472A288_S376_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A288_S376_L004


title: 12m_V_NP_12 [Gen04-02-026]

description:
replicate 1
Gen04-02-026


title: Sample_PRO472A286_S374_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A286_S374_L004


title: 12m_V_NP_8 [Gen04-02-018]

description:
replicate 1
Gen04-02-018


title: Sample_PRO472A295_S379_L005 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A295_S379_L005


title: Sample_PRO472A284_S372_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A284_S372_L004


title: Sample_PRO472A285_S373_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A285_S373_L004


title: Sample_PRO472A282_S370_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A282_S370_L004


title: Sample_PRO472A280_S368_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A280_S368_L004


title: Sample_PRO472A281_S369_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A281_S369_L004


title: Sample_PRO472A287_S375_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A287_S375_L004


title: Sample_PRO472A278_S366_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A278_S366_L004


title: Sample_PRO472A276_S364_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A276_S364_L004


title: Sample_PRO472A277_S365_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A277_S365_L004


title: Sample_PRO472A275_S363_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A275_S363_L004


title: Sample_PRO472A283_S371_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A283_S371_L004


title: Sample_PRO472A274_S362_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A274_S362_L004


title: 12m_V_NP_4 [Gen04-02-009]

description:
replicate 1
Gen04-02-009


title: 12m_V_NP_5 [Gen04-02-010]

description:
replicate 1
Gen04-02-010


title: 12m_V_NP_9 [Gen04-02-020]

description:
replicate 1
Gen04-02-020


title: SB28-mK-pos-3

city: Cleveland

first: Yadi

last: Zhou

address: 9500 Euclid Ave

institute: Cleveland Clinic

data_processing:
Sequence reads were trimmed to remove possible adapter sequences and nucleotides with poor quality using Trimmomatic v.0.36.
The trimmed reads were mapped to the Mus musculus GRCm38 reference genome available on ENSEMBL using the STAR aligner v.2.5.2b.
Unique gene hit counts were calculated by using featureCounts from the Subread package v.1.5.2.
Genome_build: Mus musculus GRCm38
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

source_name: cell culture

growth_protocol: Astrocytes and tumor cells were co-cultured in DMEM F12 media supplemented with 2% FBS, 5% N2 supplement, 20 ng/ml EGF and FGF.

extract_protocol:
Qiagen RNEasy Plus Micro Kit
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: untreated

tag: cell type

value: SB28 tumor cells


title: 12m_V_NP_7 [Gen04-02-015]

description:
replicate 1
Gen04-02-015


title: Sample_PRO472A273_S361_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A273_S361_L004


title: 12m_V_NP_2 [Gen04-02-004]

description:
replicate 1
Gen04-02-004


title: 12m_V_NP_1 [Gen04-02-002]

description:
replicate 1
Gen04-02-002


title: 12m_V_NP_3 [Gen04-02-007]

description:
replicate 1
Gen04-02-007


title: SB28-mK-pos-1


title: Sample_PRO472A272_S360_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A272_S360_L004


title: Sample_PRO472A271_S359_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A271_S359_L004


title: SB28-mK-neg-3


title: SB28-mK-neg-2


title: SB28-mK-neg-1


title: Sample_PRO472A270_S358_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A270_S358_L004


title: SB28-mK-pos-2


title: Sample_PRO472A269_S357_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A269_S357_L004


title: COLO320DM_ESRP1_10X_L

city: Grugliasco

first: Ugo

last: Ala

state: TO

address: L.go Paolo Braccini 2

country: Italy

institute: University of Turin

description: CRC cell line

hyb_protocol: Hybridization of cRNAs (750 ng) was carried out using Illumina Human 48 k gene chips (Human HT-12 V4 BeadChip). Array washing was performed using Illumina High Temp Wash Buffer for 10′ at 55 °C, followed by staining using streptavidin-Cy3 dyes (Amersham Biosciences).

scan_protocol: Probe intensity data were obtained and normalized using the Illumina Genome Studio software (Genome Studio V2011.1)

data_processing: Cubic Spline normalization

source_name: COLO320DM ESRP1 10X

label_protocol: Synthesis of cDNA and biotinylated cRNAwas performed using the IlluminaTotalPrep RNA Amplification Kit (Ambion), according to the manufacturer’s protocol using 500 ng of total RNA. Quality assessment and quantification of cRNAswere performed with Agilent RNA kits on Bioanalyzer 2100.

growth_protocol: COLO320DM cells were cultured in RPMI (Invitrogen), 10% FBS and penicillin/streptomycin (PS)

extract_protocol: RNA was extracted using miRNeasy Mini Kit (Qiagen). The quantification and quality analysis of RNA was performed on a Bioanalyzer 2100 (Agilent), using RNA 6000 nano Kit (Agilent)

treatment_protocol: cDNA-mediated overexpression (OV) of ESRP1 were obtained using pLX304 lentivirus

tag: sample type

value: CRC cell line

tag: lentivirus


title: HCA_10X_Sh4_G

source_name: HCA 10X Sh4

growth_protocol: HCA24 cells were kept in DMEM, 10% FBS and Penicillin /Streptomycin

treatment_protocol: ShRNA-mediated knockdown (Sh) of ESRP1 were obtained using PLKO.1 lentivirus


title: COLO320DM_Empty_10X_J

description: CRC cell line

source_name: COLO320DM Empty 10X

value: Empty


title: HCA_10X_Sh4_H


title: COLO320DM_Empty_10X_I

description: CRC cell line


title: COLO320DM_ESRP1_10X_K

description: CRC cell line


title: HCA_10X_Scramble_D

source_name: HCA 10X Scramble

value: Scramble


title: HCA_10X_Scramble_C


title: Astrocyte-3

value: primary neonatal astrocyte

value: C57BL6 (mito::mKate2)


title: 12m_V_NP_6 [Gen04-02-013]

description:
replicate 1
Gen04-02-013


title: Astrocyte-2


title: Sample_PRO472A267_S355_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A267_S355_L004


title: Sample_PRO472A266_S354_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A266_S354_L004


title: Sample_PRO472A268_S356_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A268_S356_L004


title: Astrocyte-1


title: Sample_PRO472A265_S353_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A265_S353_L004


title: Sample_PRO472A264_S352_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A264_S352_L004


title: Sample_PRO472A263_S351_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A263_S351_L004


title: Sample_PRO472A262_S350_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A262_S350_L004


title: Mouse embryonic fibroblasts - WNV 12 hpi rep2

city: Atlanta

first: Emilio

middle: E.

last: Espínola

state: Georgia

address: 145 Piedmont Ave SE

department: Biology

institute: Georgia State University

data_processing:
The RNA-seq data (>20M pair-end 150 bp reads per sample) were analyzed using CLC Genomic Workbench (Qiagen).
Reads were not trimmed.
The reads from each sample that mapped to the C57BL/6 mouse reference genome were used to determine relative gene expression levels.
The 12 and 24 h sample comparisons were Bonferroni corrected and False Discovery Rate (FDR) corrected. Only differentially expressed genes with a fold change (FC) >=5, an FDR p<=0.05, and a total number of exon reads in any WNV-infected sample >=12 were considered upregulated.
Genome_build: Ensembl GRCm38.93
Supplementary_files_format_and_content: fold-chage data

source_name: Mouse embryonic fibroblasts

growth_protocol: Primary MEFs were cultured in high glucose Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fetal bovine serum, 1% L-glutamine, 1% non-essential amino acid, and penicillin (100 U/ml)/streptomycin (100 µg/ml) at 37⁰ C and 5% CO2

extract_protocol:
Total RNA was harvested using Trizol reagent 12 and 24 hpi, and 2 ug of total RNA was used for the construction of sequencing libraries.
At Novagene, after RNA sample quality validation and mRNA selection, a pair-end (150 bp) cDNA library was prepared using standard Illumina protocols
Pooled samples were sequenced on a HiSeq platform

treatment_protocol: Primary IFNAR-/- MEFs (passage 5) were mock-infected or infected with WNV W956 at a MOI of 5 in triplicate in 6-well plates.

value: Mouse embryonic fibroblasts IFNAR-/-

tag: treatment

value: WNV infected

tag: time point


title: Mouse embryonic fibroblasts - WNV 24 hpi rep2


title: Mouse embryonic fibroblasts - WNV 12 hpi rep3


title: Mouse embryonic fibroblasts - WNV 24 hpi rep3


title: Mouse embryonic fibroblasts - Mock 24 h rep3

value: uninfected


title: Mouse embryonic fibroblasts - WNV 24 hpi rep1


title: Mouse embryonic fibroblasts - Mock 24 h rep2


title: Mouse embryonic fibroblasts - WNV 12 hpi rep1


title: Mouse embryonic fibroblasts - Mock 24 h rep1


title: Mouse embryonic fibroblasts - Mock 12 h rep3


title: Mallotus_japonicus_central_cylinder

city: Chiba

first: Mami

last: Yamazaki

address: Inohana 1-8-1, Chuo-ku

country: Japan

institute: Chiba University

description: Mallotus_japonicus_central_cylinder_GGCTAC_L005

data_processing:
For de novo transcriptome assembly, we pre-processed raw reads, and removed adapter sequences, empty reads, reads with ambiguous ‘N’ bases > 5%, raw reads of low quality (Q<20), and raw reads with an average length less than 30 bases. Filtering of raw reads was performed using Trimmomatic program (Bolger et al., 2014), resulting into paired end raw reads, and unpaired reads which lost its corresponding sequence partner due to quality control.
For generation of the de novo transcriptome assembly, three popular assemblers were used, CLC genomics workbench (https://www.qiagenbioinformatics.com/ ), and Trinity (Grabherr et al., 2011) with their default parameters and SoAPdeNOVO -TRANS (Xi et al., 2014)  with six different k-mer sizes, namely 31, 41, 51, 63, 71, and 91, of which k-mer 41 having best assembly statistics was selected for further use . The SOAPdeNOVO assembly with k-mer size 31 was concatenated with individual assembly obtained from Trinity  and CLC genomics workbench  to obtain the final assembly of M. japonicus. The final assembly obtained was further processed using CD-HIT  (Li and Godzik 2006) to remove any sequence redundancy. From a total of 15.59 Gbp sequencing datasets across seven tissues, the final assembly re-sulted in 226,250 unigenes with an impressive N50-value as 1,396 bp.
We then processed these contigs for read alignment and abundance estimation using Bowtie2.0 (Langmead et al., 2009) and RSEM (Li et al., 2011), respectively. To calculate unigene expression, we used Fragments per Kilobase exon per Million mapped fragments (FPKM) method.
Genome_build: de novo transcriptome assembly
Supplementary_files_format_and_content: Processed files were generated using RSEM program. Clean reads for each tissues were aligned on Mallotus japonicus de novo transcriptome assembly, and abundace were measured using RSEM. Content of each file contains Unigene_id and FPKM values for each tissues. FPKM values for each tissues were used for furthur analysis.
Supplementary_files_format_and_content: tab-delimited text file includes unigene_id, and FPKM values for each tissues. FPKM values were calculated using RSEM program. FPKM values for each tissue was merged against unigene_id

organism: Mallotus japonicus

source_name: Plant Material ID MY_Mallotus_japonicus#01 in Chiba University, Japan

growth_protocol: All seven tissues, namely young leaf, mature leaf, young stem, mature stem,bark, central cylinder and inflorescence were harvested from M. japonicus growing in the natural conditions at Medicinal garden, Graduate School of Pharmaceutical Sciences, Chiba University

extract_protocol:
Frozen samples of M. japonicus were powdered using a Multi Beads Shocker (Yasui Kikai, Japan) for subsequent RNA extraction. Total RNA for each of the seven tissues was extracted using RNeasy Plant Mini Kit (Qiagen, USA), according to the manufacturer’s instruction.
cDNA library was then prepared using SureSelect Strand Specific RNA Library kit (Agilent 150 Technologies, USA) according to the manufacturer’s specifications. mRNA was isolated from total RNA of each tissue using beads containing oligo(dt), which was then added with fragmentation buffer to shear mRNA into short fragments and used as a template for the synthesis of first strand cDNA synthesis using random hexamer primers. The cDNA library for Illumina sequencing was prepared using SureSelect Strand Specific RNA Library kit (Agilent, USA) according to the manufacturer’s instruction.

treatment_protocol: Not applicable

tag: tissues

value: Central Cylinder

tag: age


title: Sample_PRO472A261_S349_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A261_S349_L004


title: Sample_PRO472A260_S348_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A260_S348_L004


title: Mallotus_japonicus_inflorescence

department: Graduate School of Pharmaceutical Sciences

description: Mallotus_japonicus_inflorescence_CTTGTA_L005

value: Inflorescence


title: Mouse embryonic fibroblasts - Mock 12 h rep1


title: Mouse embryonic fibroblasts - Mock 12 h rep2


title: Mallotus_japonicus_bark

value: Bark


title: LKO_RF_6h_20

city: Boston

first: VICTOR

last: BARRERA BURGOS

state: Massachusetts

address: Landmark 401 Park Drive 3 East

department: Biostatistics

institute: Harvard School of Public Health

data_processing:
Sequenced reads were assessed for low-quality sequence, then mapped against the mm10 transcriptome where reads were quantified at the transcript level using Salmon
Transcript-level abundance estimates  from Salmon were collapsed to gene-leve estimates and  converted to raw count values using the R Bioconductor package tximport
Differentially expressed genes were identified using the R Bioconductor package DESeq2
Genome_build: mm10
Supplementary_files_format_and_content: comma separated file of raw count matrix where columns correspond to samples and rows correspond to genes; comma separated file of transcript per million counts where columns correspond to samples and rows correspond to genes

source_name: liver

extract_protocol:
Livers were excised from mice and flash froze in liquid nitrogen. RNA was extracted from approximately 10mg of liver from the left lobe for all samples using the Rneasy Mini Kit from Qiagen. Strand -specific libraries were generated with 500ng of RNA using Illumina TruSeq library preparation
RNA libraries were prepared using standard Illumina protocols

tag: genotype

value: Atf4 knockout

tag: group

tag: tissue

value: Liver tissue

value: 8 weeks


title: LKO_RF_6h_19


title: Sample_PRO472A279_S367_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A279_S367_L004

value: Adult


title: Sample_PRO472A259_S347_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A259_S347_L004

value: Naive


title: LKO_RF_6h_16


title: Mallotus_japonicus_young_Stem

description: Mallotus_japonicus_young_stem_ACTTGA_L005

value: Young Stem


title: LKO_RF_6h_17


title: Sample_PRO472A258_S346_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A258_S346_L004


title: LKO_RF_6h_18


title: LKO_Fast_15

value: Fast


title: Sample_PRO472A257_S345_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A257_S345_L004


title: Mallotus_japonicus_mature_Stem

description: Mallotus_japonicus_mature_stem_GATCAG_L005

value: Mature Stem


title: LKO_Fast_11


title: LKO_Fast_13


title: Mallotus_japonicus_young_Leaf

description: Mallotus_japonicus_young_leaf_GCCAAT_L005

value: Young Leaf


title: Mallotus_japonicus_mature_Leaf

description: Mallotus_japonicus_mature_leaf_CAGATC_L005

value: Mature Leaf


title: LKO_Fast_14


title: Atf4fl_fl_RF_6h_10

value: WT


title: LKO_Fast_12


title: Atf4fl_fl_RF_6h_9


title: Sample_PRO472A255_S343_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A255_S343_L004


title: Sample_PRO472A254_S342_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A254_S342_L004


title: Sample_PRO472A253_S341_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A253_S341_L004


title: Atf4fl_fl_RF_6h_7


title: Atf4fl_fl_RF_6h_8


title: Atf4fl_fl_Fast_5


title: Atf4fl_fl_RF_6h_6


title: Sample_PRO472A252_S340_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A252_S340_L004


title: Sample_PRO472A251_S339_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A251_S339_L004


title: Atf4fl_fl_Fast_2


title: Atf4fl_fl_Fast_1


title: Sample_PRO472A256_S344_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A256_S344_L004


title: Sample_PRO472A250_S338_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A250_S338_L004


title: Bcl6 HET Rep 5

city: New York City

first: Christopher

middle: Russell

last: Chin

state: NY

address: 413 E 69th Street, Belfer Building, BB-1462

institute: Weill Cornell

description: IµBcl6 Smc3 wt/-

data_processing:
Raw RNA-seq data processed using nf-core rnaseq pipeline v1.4.2
Using gene counts, further processing was done in R 4.0.2 with DESEQ2 1.28.1
Genome_build: mm10
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

source_name: Lymph Node

extract_protocol: RNA libraries were prepared for sequencing using standard Illumina protocols

value: Lymph Node

value: ImicroBcl6 Smc3 wt/-


title: Bcl6 HET Rep 6

description: IµBcl6 Smc3 wt/-


title: Bcl6 HET Rep 4

description: IµBcl6 Smc3 wt/-


title: Bcl6 HET Rep 3

description: IµBcl6 Smc3 wt/-


title: Bcl6 WT Rep 2

description: IµBcl6 Smc3 wt/wt

value: ImicroBcl6 Smc3 wt/wt


title: Bcl6 HET Rep 1

description: IµBcl6 Smc3 wt/-

source_name: Mesenteric Lymph Node

value: Mesenteric Lymph Node


title: Bcl6 WT Rep 3

description: IµBcl6 Smc3 wt/wt


title: Sample_PRO472A248_S336_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A248_S336_L004


title: Sample_PRO472A246_S334_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A246_S334_L004


title: Bisulfite-Seq MG 3

city: Winnipeg

first: Mark

last: Belmonte

state: Manitoba

address: 50 Sifton Rd

department: Biological Sciences

country: Canada

institute: University of Manitoba

description:
MG 3
MG_meth.txt

library_source: genomic

data_processing:
WGBS: TRIMMING. Quality trimming and adaptor removal were performed using Trimmomatic (http://www.bioinformatics.babraham.ac.uk/projects/fastqc/).
WGBS: ALIGNMENT. Successfully paired reads were aligned to the DH12075 genome using BSMap2
WBGS: BASE CALLING. cytosine methylation levels were called using the methratio script (Xi and Li 2009). Individual cytosines had to be covered by at least 4 reads to be considered for analysis.
sRNAseq: TRIMMING. Quality trimming and adaptor removal were completed with Trimmomatic
sRNAseq: ALIGNMENT.  sRNAseq: ALIGNMENT. Surviving reads were aligned to the DH12075 genome using Bowtie on default settings. Aligned reads were then filtered for rRNA, tRNA, snRNA, and snoRNA species by aligning them to known records in NCBI under all Viridiplantae
sRNAseq: sRNA PREDICTION. siRNA prediction was done using Short Stack on default settings (Axtell, 2013). SRCs overlapping 90% with a predicted SRC in another bioreplicate were passed through analysis to coincide with miRNA criteria covered in Axtell and Meyers (2018). SRCs overlapping with REs were classified as rasiRNAs, and SRCs exceeding a phase score of 25 were classified as phasiRNAs.
Genome_build: Brassica napus cv. BioProject ID: PRJNA218846.
Supplementary_files_format_and_content: WGBS: tab-delimited text file indicating the C/T conversion ratio by which methylation ratio can be determined for each locus in the CG, CHG, and CHH contexts

molecule: genomic DNA

organism: Brassica napus

source_name: Mature green seed (28DPF)

growth_protocol: Methylome analyses were performed in B. napus cv. DH12075. Plants were grown in growth chambers under long day conditions at 22°C. Flowers were hand-pollinated and collected at 0 DPF (OV), 7 DPF (GLOB), 10 DPF (HEART), 28 DPF (MG), and 35 DPF (DS).

extract_protocol:
DNA was isolated from seeds using the Qiagen Plant DNeasy Mini Kit. RNA was isolated from seeds using the Qiagen miRNeasy mini kit.
WGBS: Library preparation for bisulfite sequencing was performed at Genome Quebec. DNA was sheared via sonication on the Covaris platform prior adaptor ligation and bisulfite conversion using the EZ-96 DNA Methylation-Lightning Kit (Zymo®). Libraries were then amplified using the DNA UltraII Kit (NEB®). sRNAseq: Total RNA collected from seeds was used for library prep with the NEBNext® Small RNA Library Prep Set for Illumina® (Multiplex compatible).

treatment_protocol: Seeds were manually harvested from siliques and ground in liquid nitrogen for nucleic acid extractions

tag: seed stage

value: MG

tag: cultivar


title: Bcl6 WT Rep 1

description: IµBcl6 Smc3 wt/wt


title: Atf4fl_fl_Fast_3


title: Bisulfite-Seq MG 2

description:
MG 2
MG_meth.txt


title: Atf4fl_fl_Fast_4


title: Sample_PRO472A244_S332_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A244_S332_L004


title: Sample_PRO472A245_S333_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A245_S333_L004


title: 18/5 DKO GFP HIGH 2

city: Cambridge

first: Irina

last: Mohorianu

address: Puddicombe Way

department: Wellcome-MRC Cambridge Stem Cell Institute

institute: University of Cambridge

data_processing:
Reads were quality-trimmed using TrimGalore!; reads shorter than 15 nt were discarded.
Reads were aligned to the mouse reference genome (mm10) using bowtie with parameters "-m1 -v1 --best --strata -X 2000 --trim3 1". Duplicates were removed using Picard tools.
Reads shorter than one nucleosome length were discarded, and an offset of 4 nts was introduced.
bigWig tracks were created using deepTools bamCoverage with default parameters.
Genome_build: mm10
Supplementary_files_format_and_content: bigWig tracks

source_name: mEpiLC

growth_protocol: Mouse ES cells were cultured in 2iL. EpiLC differentiation were performed in actinvin a, bFgf and 1% KSR medium.

extract_protocol:
50,000 cells were collected and washed with ice-cold PBS once then lysed in the buffer (10 mM Tris-HCl, pH _x000B_7.4, 10 mM NaCl, 3 mM MgCl2, 0.1% IGEPAL). The nuclear pellets were collected and Tn5 tagmentation were performed with Illumina Nextera kit.  (FC-121-1030)
Library construction were performed with Illumina Nextera kit.  (FC-121-1030)

treatment_protocol: GFP high or low fraction were collected by FACS moflo.

value: mEpiLC

value: Dnmt3a3b double KO

tag: fraction

value: high


title: Bisulfite-Seq MG 1

description:
MG 1
MG_meth.txt


title: 1/6 DKO GFP LOW 2

value: low


title: 1/6 DKO GFP HIGH 1


title: Sample_PRO472A249_S337_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A249_S337_L004

value: Adult


title: 1/6 DKO GFP HIGH 2


title: Sample_PRO472A243_S331_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A243_S331_L004

value: Naive


title: 1/6 DKO GFP LOW 3


title: 12m_V_NP_10 [Gen04-02-021]

description:
replicate 1
Gen04-02-021

tag: patient

value: Kidney transplant

tag: protocol

value: 1 year surveillance biopsy

tag: phenotype

value: Non-Progressor

tag: cohort

value: Validation


title: Bcl6 HET Rep 2

description: IµBcl6 Smc3 wt/-


title: Sample_PRO472A247_S335_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A247_S335_L004

tag: Stage

tag: strain

tag: disease state


title: Sample_PRO472A242_S330_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A242_S330_L004


title: Bisulfite-Seq GLOB 3

description:
GLOB 3
GLOB_meth.txt

source_name: Globular seed (7DPF)

value: GLOB


title: 18/5 DKO GFP LOW 2

tag: cell type


title: Bisulfite-Seq GLOB 2

description:
GLOB 2
GLOB_meth.txt


title: 23/5 DKO ES 2

source_name: mES cells

value: mES cells


title: 18/5 DKO GFP LOW 1


title: Bisulfite-Seq GLOB 1

description:
GLOB 1
GLOB_meth.txt


title: 23/5 DKO ES 1


title: Sample_PRO472A241_S329_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A241_S329_L004


title: 18/5 WT GFP HIGH 3

value: WT


title: EOL-1_sgNSD3_replicate_2

city: DURHAM

first: Chenxi

last: Xu

state: North Carolina

address: 3 Genome Court

department: Department of Pharmacology and Cancer Biology

institute: Duke university

data_processing:
RNA-seq reads were mapped using MapSplice and quantified using RSEM. Read counts were upper-quantile normalized and log2 transformed.
Raw read counts were used for differential gene expression analysis by DESeq2.
Genome_build: hg19
Supplementary_files_format_and_content: matrix of RNA-seq read counts and Deseq output files

source_name: EOL-1 cells

growth_protocol: EOL-1 cells were grown in the RPMI-1640 base medium plus 10% of FBS and 1% of antibiotics.

extract_protocol:
RNA was extracted by using Qiagen RNeasy Mini Kit. 1 ug of total RNA for the construction of the pooled sequencing libraries.
RNA was extracted with the Qiagen RNeasy Mini Kit. 1 μg of total RNA was used for construction of the multiplexed sequencing libraries.

treatment_protocol: For compound treatment studies, EOL-1 cells were treated with 2.5 µM of either DMSO, BI-9321, MS9715 or MS9715N for 4 days and collected. For NSD3 knockout (KO), EOL-1 cell was first transduced with a doxycycline (dox)-inducible Cas9 (iCas9) and the verified iCas9-expressing EOL-1 cells then stably transduced with either empty vector (sgEV) or that with an NSD3-targeting sgRNA, followed by a four-day induction of iCas9 before cell were collected for RNA preparation.

tag: cell line

value: EOL-1 cells

tag: agent


title: Sample_PRO472A240_S328_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A240_S328_L004


title: 18/5 WT GFP HIGH 1


title: 1/6 WT GFP HIGH 1


title: Sample_PRO472A239_S327_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A239_S327_L004


title: KO.2iL

data_processing:
Preliminary sequencing results (bcl files) were converted to fastq files with CellRanger (version 3.0) following the standard 10x Genomics protocol. Barcodes and unique molecular identifier (UMI) ends were trimmed to 26 bp, and mRNA ends to 98 bp.
Reads were then aligned to the mouse reference genome (mm10) and gene counts were obtained using the GRCm38.92 annotation in CellRanger.
We used Seurat (version 2.3.0) (Butler et al., 2018) to further process the single-cell RNA-seq data. Cells that have between 200 and 5500 unique gene counts, and with less than 5% mitochondrial gene content were filtered
Log-normalization using a scale factor of 10,000 was performed, and the data was scaled to produce standardized expression values for each gene across all cells (z-score transformation), while also regressing out unwanted variation in the percent of mitochondrial gene content.
We determined the top 2,000 most highly variable genes, and performed principal component analysis.  Clusters were determined using the Louvain community detection method as implemented by the FindCluster function in Seurat with a resolution of 0.9. Visualisation was performed after using tSNE dimensional reduction on the first 18 principal components. Differential expression was performed using the Wilcoxon rank sum test, using a threshold of log2 fold change greater than 0.1 and p-value less than 0.05.
Genome_build: mm10
Supplementary_files_format_and_content: Gene expression matrix and cell type identities

extract_protocol:
10xgenomics
10xgenomics

treatment_protocol: After the harvest, live cells were collected by FACS moflo.

tag: genotypes


title: 1/6 WT GFP HIGH 3

tag: genotype


title: Sample_PRO472A238_S326_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A238_S326_L004


title: EOL-1_sgNSD3_replicate_1


title: WT.2iL


title: KO.AFKD2


title: WT.AFKD2


title: EOL-1_sgEV_replicate_1

value: sgEV


title: EOL-1_sgEV_replicate_2


title: Sample_PRO472A237_S325_L004 Naive enteric glia, rep 2

description:
Naive enteric glia, rep 2
Naive 2
Sample_PRO472A237_S325_L004


title: EOL-1_MS9715N_replicate_2