title: genomic DNA from peripheral blood OtherInfection 20

description:
OtherInfection+ peripheral blood sample
204658390043_R06C01

value: Female

value: Home


title: genomic DNA from peripheral blood SARS-COV-2- 264

status: Public on Sep 20 2021

type: genomic

city: Aurora

first: Ivana

last: Yang

state: CO

country: USA

institute: University of Colorado - Anschutz Medical Campus

description:
SARS-COV-2- peripheral blood sample
204658390043_R02C01

hyb_protocol: The bisulfite converted amplified DNA products were denatured into single strands and hybridized to the customized Infinium 850K BeadChip (EPIC+; Illumina Inc., San Diego, CA) via allele-specific annealing to either the methylation specific probe or the non-methylation probe. Hybridization to the chip was followed by single base extension with labeled di-deoxynucleotides according to Illumina’s Infinium protocol

scan_protocol: The hybridized BeadChips were stained, washed, and scanned to show the intensities of the un-methylated and methylated bead types using Illumina’s iScan System.

data_processing:
IDAT files were processed, filtered, and normalized using the SeSAMe R package65. Type I probe channel was empirically determined from signal intensities. Probe detection p-values (representing the ability to differentiate true signal from background fluorescence) were calculated for each color channel using pOOBAH, which leverages the fluorescence of out-of-band (OOB) probes. Normalization was performed using noob, which uses OOB probes to perform a normal-exponential deconvolution of fluorescent intensities. Finally, a common dye bias that results in greater intensities in the Red color channel was corrected to ensure that the distribution of intensities in the two color channels were equal. Probes with detection p-values > 0.05 were removed, as well as probes overlapping SNPs with global MAF >1% in dbSNP, probes with poor mapping, and probes containing non-unique sequence according to Wanding Zhou et al Nucleic Acids Research 2018.
seSAMe-normalized (Type I probe channels inferred from data, pOOBAH for detection p-value calculations, noob normalization, Type I probe dye bias linear correction) Average Beta

label: Cy5 and Cy3

molecule: genomic DNA

organism: Homo sapiens

source_name: SARS-COV-2- 264

label_protocol: Bisulfite converted DNA was labelled with Cy3 and Cy5 dyes per manufacturer's instructions

extract_protocol: Genomic DNA was extracted from COVID-19+ peripheral blood on the bead-based, automated extraction Maxwell(R) RSC System (Promega) in a biological safety cabinet in compliance with CDC safety guidelines and procedures for handling COVID-19 biospecimens (biospecimens from COVID-19+  cases), and from controls on the Autogen FlexSTAR+ using Autogen’s FlexiGene Blood extraction kit (Holliston, MA).

value: negative

tag: Sex

value: Male

tag: age

tag: race

value: White

tag: ethnicity

value: Not Hispanic or Latino

value: No Panel

tag: hemoglobin

tag: hematocrit

value: Yes

value: ICU

tag: severity score


title: genomic DNA from peripheral blood OtherInfection 32

description:
OtherInfection+ peripheral blood sample
204658390048_R04C01

value: other infection

value: BlackorAA

value: No

value: Discharged

value: Other


title: genomic DNA from peripheral blood OtherInfection 24

description:
OtherInfection+ peripheral blood sample
204658390043_R05C01

value: Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2- 206

description:
SARS-COV-2- peripheral blood sample
204658390040_R08C01

source_name: SARS-COV-2- 206

value: Floor Admission


title: genomic DNA from peripheral blood OtherInfection 15

description:
OtherInfection+ peripheral blood sample
204658390044_R06C01

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood SARS-COV-2+ 109

description:
SARS-COV-2+ peripheral blood sample
204658390040_R06C01

source_name: SARS-COV-2+ 109

value: positive

value: Female


title: genomic DNA from peripheral blood SARS-COV-2- 197

description:
SARS-COV-2- peripheral blood sample
204658390043_R03C01

source_name: SARS-COV-2- 197

value: negative


title: genomic DNA from peripheral blood SARS-COV-2- 109

description:
SARS-COV-2- peripheral blood sample
204658390044_R07C01

source_name: SARS-COV-2- 109

value: Male

value: Home


title: genomic DNA from peripheral blood SARS-COV-2+ 113

description:
SARS-COV-2+ peripheral blood sample
204658390043_R01C01

source_name: SARS-COV-2+ 113

value: White


title: genomic DNA from peripheral blood SARS-COV-2- 213

description:
SARS-COV-2- peripheral blood sample
204658390040_R01C01

source_name: SARS-COV-2- 213

value: Not Hispanic or Latino

value: No Panel


title: genomic DNA from peripheral blood OtherInfection 51

description:
OtherInfection+ peripheral blood sample
204658390039_R06C01


title: genomic DNA from peripheral blood SARS-COV-2- 120

description:
SARS-COV-2- peripheral blood sample
204658390040_R07C01

source_name: SARS-COV-2- 120


title: genomic DNA from peripheral blood OtherInfection 41

description:
OtherInfection+ peripheral blood sample
204658390039_R07C01

value: Yes

value: ICU


title: genomic DNA from peripheral blood SARS-COV-2+ 65

description:
SARS-COV-2+ peripheral blood sample
204658390038_R08C01

source_name: SARS-COV-2+ 65


title: genomic DNA from peripheral blood SARS-COV-2- 256

description:
SARS-COV-2- peripheral blood sample
204658390040_R03C01

source_name: SARS-COV-2- 256


title: genomic DNA from peripheral blood OtherInfection 26

description:
OtherInfection+ peripheral blood sample
204658390038_R07C01

value: other infection

value: BlackorAA


title: genomic DNA from peripheral blood SARS-COV-2+ 100

description:
SARS-COV-2+ peripheral blood sample
204658390039_R08C01

source_name: SARS-COV-2+ 100

value: Asian

value: No


title: genomic DNA from peripheral blood SARS-COV-2- 232

description:
SARS-COV-2- peripheral blood sample
204658390040_R04C01

source_name: SARS-COV-2- 232

value: Other

value: Hispanic or Latino

value: Discharged


title: genomic DNA from peripheral blood OtherInfection 54

description:
OtherInfection+ peripheral blood sample
204658390039_R05C01

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2+ 102

description:
SARS-COV-2+ peripheral blood sample
204658390038_R02C01

source_name: SARS-COV-2+ 102

value: positive


title: genomic DNA from peripheral blood SARS-COV-2- 262

description:
SARS-COV-2- peripheral blood sample
204658390038_R06C01

source_name: SARS-COV-2- 262

value: negative


title: genomic DNA from peripheral blood OtherInfection 11

description:
OtherInfection+ peripheral blood sample
204658390038_R05C01

value: Male


title: genomic DNA from peripheral blood SARS-COV-2- 267

description:
SARS-COV-2- peripheral blood sample
204658390038_R04C01

source_name: SARS-COV-2- 267

value: Female

value: Home


title: genomic DNA from peripheral blood SARS-COV-2- 102

description:
SARS-COV-2- peripheral blood sample
204658390037_R07C01

source_name: SARS-COV-2- 102

value: Not Hispanic or Latino

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood SARS-COV-2+ 66

description:
SARS-COV-2+ peripheral blood sample
204658390037_R06C01

source_name: SARS-COV-2+ 66

value: No Panel


title: genomic DNA from peripheral blood SARS-COV-2- 108

description:
SARS-COV-2- peripheral blood sample
204658390038_R01C01

source_name: SARS-COV-2- 108

value: White

value: Yes


title: genomic DNA from peripheral blood OtherInfection 16

description:
OtherInfection+ peripheral blood sample
204658390038_R03C01

value: other infection


title: genomic DNA from peripheral blood SARS-COV-2+ 107

description:
SARS-COV-2+ peripheral blood sample
204658390039_R03C01

source_name: SARS-COV-2+ 107


title: genomic DNA from peripheral blood OtherInfection 46

description:
OtherInfection+ peripheral blood sample
204658390037_R05C01


title: genomic DNA from peripheral blood SARS-COV-2- 248

description:
SARS-COV-2- peripheral blood sample
204658390040_R02C01

source_name: SARS-COV-2- 248


title: genomic DNA from peripheral blood OtherInfection 50

description:
OtherInfection+ peripheral blood sample
204658390037_R04C01

value: BlackorAA


title: genomic DNA from peripheral blood OtherInfection 64

description:
OtherInfection+ peripheral blood sample
204658390037_R03C01

value: No


title: genomic DNA from peripheral blood SARS-COV-2- 199

description:
SARS-COV-2- peripheral blood sample
204658390036_R08C01

source_name: SARS-COV-2- 199


title: genomic DNA from peripheral blood SARS-COV-2+ 67

description:
SARS-COV-2+ peripheral blood sample
204658390037_R01C01

source_name: SARS-COV-2+ 67


title: genomic DNA from peripheral blood SARS-COV-2+ 92

description:
SARS-COV-2+ peripheral blood sample
204658390036_R04C01

source_name: SARS-COV-2+ 92

value: Other


title: genomic DNA from peripheral blood SARS-COV-2- 114

description:
SARS-COV-2- peripheral blood sample
204658390037_R02C01

source_name: SARS-COV-2- 114


title: genomic DNA from peripheral blood OtherInfection 37

description:
OtherInfection+ peripheral blood sample
204658390036_R06C01


title: genomic DNA from peripheral blood SARS-COV-2- 107

description:
SARS-COV-2- peripheral blood sample
204658390036_R02C01

source_name: SARS-COV-2- 107


title: genomic DNA from peripheral blood SARS-COV-2+ 135

description:
SARS-COV-2+ peripheral blood sample
204658390034_R08C01

source_name: SARS-COV-2+ 135

value: Hispanic or Latino

value: ICU


title: genomic DNA from peripheral blood SARS-COV-2- 281

description:
SARS-COV-2- peripheral blood sample
204658390034_R05C01

source_name: SARS-COV-2- 281


title: genomic DNA from peripheral blood SARS-COV-2- 284

description:
SARS-COV-2- peripheral blood sample
204658390034_R07C01

source_name: SARS-COV-2- 284


title: genomic DNA from peripheral blood OtherInfection 65

description:
OtherInfection+ peripheral blood sample
204658390036_R05C01

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2+ 134

description:
SARS-COV-2+ peripheral blood sample
204658390034_R01C01

source_name: SARS-COV-2+ 134

value: positive

value: Asian


title: genomic DNA from peripheral blood SARS-COV-2+ 99

description:
SARS-COV-2+ peripheral blood sample
204658390037_R08C01

source_name: SARS-COV-2+ 99

value: Male

value: Death


title: genomic DNA from peripheral blood SARS-COV-2- 280

description:
SARS-COV-2- peripheral blood sample
204658390034_R02C01

source_name: SARS-COV-2- 280

value: negative

value: Female


title: genomic DNA from peripheral blood SARS-COV-2+ 98

description:
SARS-COV-2+ peripheral blood sample
204658390036_R03C01

source_name: SARS-COV-2+ 98

value: Home


title: genomic DNA from peripheral blood OtherInfection 18

description:
OtherInfection+ peripheral blood sample
204658390032_R05C01


title: genomic DNA from peripheral blood SARS-COV-2- 231

description:
SARS-COV-2- peripheral blood sample
204658390032_R02C01

source_name: SARS-COV-2- 231

value: Not Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2+ 137

description:
SARS-COV-2+ peripheral blood sample
204658390034_R03C01

source_name: SARS-COV-2+ 137

value: No Panel


title: genomic DNA from peripheral blood OtherInfection 12

description:
OtherInfection+ peripheral blood sample
204658390032_R06C01

value: White

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood SARS-COV-2- 273

description:
SARS-COV-2- peripheral blood sample
204658390031_R06C01

source_name: SARS-COV-2- 273

value: Yes


title: genomic DNA from peripheral blood SARS-COV-2- 118

description:
SARS-COV-2- peripheral blood sample
204658390032_R07C01

source_name: SARS-COV-2- 118

value: BlackorAA


title: genomic DNA from peripheral blood SARS-COV-2+ 128

description:
SARS-COV-2+ peripheral blood sample
204658390032_R03C01

source_name: SARS-COV-2+ 128

value: No


title: genomic DNA from peripheral blood SARS-COV-2- 268

description:
SARS-COV-2- peripheral blood sample
204658390032_R01C01

source_name: SARS-COV-2- 268

value: Other

value: Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2+ 136

description:
SARS-COV-2+ peripheral blood sample
204658390034_R04C01

source_name: SARS-COV-2+ 136

value: Floor Admission


title: genomic DNA from peripheral blood OtherInfection 22

description:
OtherInfection+ peripheral blood sample
204658390032_R08C01

value: other infection

value: Discharged


title: genomic DNA from peripheral blood SARS-COV-2- 259

description:
SARS-COV-2- peripheral blood sample
204658390031_R08C01

source_name: SARS-COV-2- 259

value: Male

value: ICU


title: genomic DNA from peripheral blood OtherInfection 28

description:
OtherInfection+ peripheral blood sample
204658390031_R07C01


title: genomic DNA from peripheral blood OtherInfection 9

description:
OtherInfection+ peripheral blood sample
204658390031_R02C01


title: genomic DNA from peripheral blood SARS-COV-2- 98

description:
SARS-COV-2- peripheral blood sample
204658390030_R06C01

source_name: SARS-COV-2- 98

value: negative


title: genomic DNA from peripheral blood SARS-COV-2- 274

description:
SARS-COV-2- peripheral blood sample
204658390031_R05C01

source_name: SARS-COV-2- 274


title: genomic DNA from peripheral blood SARS-COV-2- 95

description:
SARS-COV-2- peripheral blood sample
204658390030_R05C01

source_name: SARS-COV-2- 95


title: genomic DNA from peripheral blood SARS-COV-2+ 69

description:
SARS-COV-2+ peripheral blood sample
204658390030_R07C01

source_name: SARS-COV-2+ 69

value: positive

value: Asian


title: genomic DNA from peripheral blood OtherInfection 48

description:
OtherInfection+ peripheral blood sample
204658390030_R01C01

value: Not Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2+ 97

description:
SARS-COV-2+ peripheral blood sample
204658390031_R03C01

source_name: SARS-COV-2+ 97

value: No Panel

value: Home


title: genomic DNA from peripheral blood SARS-COV-2+ 131

description:
SARS-COV-2+ peripheral blood sample
204658390032_R04C01

source_name: SARS-COV-2+ 131

value: Female


title: genomic DNA from peripheral blood OtherInfection 30

description:
OtherInfection+ peripheral blood sample
204658390030_R02C01


title: genomic DNA from peripheral blood SARS-COV-2+ 68

description:
SARS-COV-2+ peripheral blood sample
204658390031_R01C01

source_name: SARS-COV-2+ 68

value: White

value: Yes

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood OtherInfection 8

description:
OtherInfection+ peripheral blood sample
204658390031_R04C01

value: No


title: genomic DNA from peripheral blood SARS-COV-2- 228

description:
SARS-COV-2- peripheral blood sample
204658390027_R06C01

source_name: SARS-COV-2- 228

value: BlackorAA


title: genomic DNA from peripheral blood SARS-COV-2- 207

description:
SARS-COV-2- peripheral blood sample
204658390027_R08C01

source_name: SARS-COV-2- 207

value: Other

value: Hispanic or Latino

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2- 261

description:
SARS-COV-2- peripheral blood sample
204658390027_R05C01

source_name: SARS-COV-2- 261

value: Male


title: genomic DNA from peripheral blood SARS-COV-2+ 61

description:
SARS-COV-2+ peripheral blood sample
204658390030_R04C01

source_name: SARS-COV-2+ 61

value: Discharged


title: genomic DNA from peripheral blood SARS-COV-2+ 126

description:
SARS-COV-2+ peripheral blood sample
204658390027_R02C01

source_name: SARS-COV-2+ 126


title: genomic DNA from peripheral blood SARS-COV-2- 204

description:
SARS-COV-2- peripheral blood sample
204658390027_R07C01

source_name: SARS-COV-2- 204

value: negative


title: genomic DNA from peripheral blood OtherInfection 59

description:
OtherInfection+ peripheral blood sample
204658390030_R03C01

value: other infection


title: genomic DNA from peripheral blood SARS-COV-2- 263

description:
SARS-COV-2- peripheral blood sample
204658390026_R05C01

source_name: SARS-COV-2- 263

value: ICU


title: genomic DNA from peripheral blood SARS-COV-2- 279

description:
SARS-COV-2- peripheral blood sample
204658390027_R04C01

source_name: SARS-COV-2- 279

value: Not Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2+ 95

description:
SARS-COV-2+ peripheral blood sample
204658390030_R08C01

source_name: SARS-COV-2+ 95

value: positive

value: No Panel


title: genomic DNA from peripheral blood SARS-COV-2+ 129

description:
SARS-COV-2+ peripheral blood sample
204658390026_R04C01

source_name: SARS-COV-2+ 129

value: Home


title: genomic DNA from peripheral blood SARS-COV-2- 233

description:
SARS-COV-2- peripheral blood sample
204658390027_R03C01

source_name: SARS-COV-2- 233

value: Female

value: White


title: genomic DNA from peripheral blood OtherInfection 27

description:
OtherInfection+ peripheral blood sample
204658390026_R01C01


title: genomic DNA from peripheral blood SARS-COV-2- 216

description:
SARS-COV-2- peripheral blood sample
204658390026_R03C01

source_name: SARS-COV-2- 216

value: Yes


title: genomic DNA from peripheral blood OtherInfection 29

description:
OtherInfection+ peripheral blood sample
204658390025_R08C01

value: No


title: genomic DNA from peripheral blood SARS-COV-2+ 104

description:
SARS-COV-2+ peripheral blood sample
204658390026_R07C01

source_name: SARS-COV-2+ 104


title: genomic DNA from peripheral blood OtherInfection 17

description:
OtherInfection+ peripheral blood sample
204658390025_R05C01

value: BlackorAA


title: genomic DNA from peripheral blood SARS-COV-2- 260

description:
SARS-COV-2- peripheral blood sample
204658390026_R02C01

source_name: SARS-COV-2- 260


title: genomic DNA from peripheral blood OtherInfection 21

description:
OtherInfection+ peripheral blood sample
204658390026_R06C01


title: genomic DNA from peripheral blood OtherInfection 14

description:
OtherInfection+ peripheral blood sample
204658390025_R04C01


title: genomic DNA from peripheral blood SARS-COV-2- 270

description:
SARS-COV-2- peripheral blood sample
204658390024_R08C01

source_name: SARS-COV-2- 270


title: genomic DNA from peripheral blood SARS-COV-2- 211

description:
SARS-COV-2- peripheral blood sample
204658390025_R01C01

source_name: SARS-COV-2- 211


title: genomic DNA from peripheral blood SARS-COV-2- 116

description:
SARS-COV-2- peripheral blood sample
204658390026_R08C01

source_name: SARS-COV-2- 116

value: Other


title: genomic DNA from peripheral blood SARS-COV-2- 237

description:
SARS-COV-2- peripheral blood sample
204658390024_R07C01

source_name: SARS-COV-2- 237


title: genomic DNA from peripheral blood SARS-COV-2+ 127

description:
SARS-COV-2+ peripheral blood sample
204658390024_R06C01

source_name: SARS-COV-2+ 127

value: Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2- 238

description:
SARS-COV-2- peripheral blood sample
204658390024_R05C01

source_name: SARS-COV-2- 238

value: Asian


title: genomic DNA from peripheral blood SARS-COV-2- 235

description:
SARS-COV-2- peripheral blood sample
204658390024_R03C01

source_name: SARS-COV-2- 235


title: genomic DNA from peripheral blood SARS-COV-2+ 116

description:
SARS-COV-2+ peripheral blood sample
204658390024_R02C01

source_name: SARS-COV-2+ 116

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2- 105

description:
SARS-COV-2- peripheral blood sample
204658390023_R08C01

source_name: SARS-COV-2- 105

value: Male


title: genomic DNA from peripheral blood SARS-COV-2- 194

description:
SARS-COV-2- peripheral blood sample
204658390024_R01C01

source_name: SARS-COV-2- 194

value: negative

value: Discharged


title: genomic DNA from peripheral blood SARS-COV-2+ 121

description:
SARS-COV-2+ peripheral blood sample
204658390024_R04C01

source_name: SARS-COV-2+ 121


title: genomic DNA from peripheral blood SARS-COV-2- 100

description:
SARS-COV-2- peripheral blood sample
204658390023_R07C01

source_name: SARS-COV-2- 100


title: genomic DNA from peripheral blood OtherInfection 55

description:
OtherInfection+ peripheral blood sample
204658390023_R06C01

value: other infection

value: Adenovirus


title: genomic DNA from peripheral blood SARS-COV-2+ 70

description:
SARS-COV-2+ peripheral blood sample
204658390023_R04C01

source_name: SARS-COV-2+ 70

value: positive

value: Not Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2+ 96

description:
SARS-COV-2+ peripheral blood sample
204658390023_R05C01

source_name: SARS-COV-2+ 96

value: No Panel

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood OtherInfection 53

description:
OtherInfection+ peripheral blood sample
204658390023_R03C01

value: Female

value: ICU

value: Home


title: genomic DNA from peripheral blood OtherInfection 56

description:
OtherInfection+ peripheral blood sample
204658390023_R01C01

value: White

value: No


title: genomic DNA from peripheral blood SARS-COV-2+ 64

description:
SARS-COV-2+ peripheral blood sample
204658390023_R02C01

source_name: SARS-COV-2+ 64


title: genomic DNA from peripheral blood SARS-COV-2+ 105

description:
SARS-COV-2+ peripheral blood sample
204658390022_R07C01

source_name: SARS-COV-2+ 105

value: Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2+ 112

description:
SARS-COV-2+ peripheral blood sample
204658390025_R07C01

source_name: SARS-COV-2+ 112

value: Yes

value: Death


title: genomic DNA from peripheral blood SARS-COV-2- 110

description:
SARS-COV-2- peripheral blood sample
204658390022_R08C01

source_name: SARS-COV-2- 110

value: BlackorAA


title: genomic DNA from peripheral blood OtherInfection 57

description:
OtherInfection+ peripheral blood sample
204658390022_R05C01


title: genomic DNA from peripheral blood OtherInfection 34

description:
OtherInfection+ peripheral blood sample
204658390022_R06C01

value: Male


title: genomic DNA from peripheral blood OtherInfection 44

description:
OtherInfection+ peripheral blood sample
204658390022_R04C01

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2+ 73

description:
SARS-COV-2+ peripheral blood sample
204658390022_R03C01

source_name: SARS-COV-2+ 73

value: Other

value: Discharged


title: genomic DNA from peripheral blood SARS-COV-2- 115

description:
SARS-COV-2- peripheral blood sample
204658390022_R02C01

source_name: SARS-COV-2- 115

value: negative


title: genomic DNA from peripheral blood SARS-COV-2- 106

description:
SARS-COV-2- peripheral blood sample
204658390020_R07C01

source_name: SARS-COV-2- 106

value: Not Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2+ 91

description:
SARS-COV-2+ peripheral blood sample
204658390022_R01C01

source_name: SARS-COV-2+ 91

value: positive

value: No Panel


title: genomic DNA from peripheral blood SARS-COV-2+ 93

description:
SARS-COV-2+ peripheral blood sample
204658390020_R08C01

source_name: SARS-COV-2+ 93

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood SARS-COV-2+ 101

description:
SARS-COV-2+ peripheral blood sample
204658390020_R05C01

source_name: SARS-COV-2+ 101

value: Female


title: genomic DNA from peripheral blood SARS-COV-2- 103

description:
SARS-COV-2- peripheral blood sample
204658390020_R06C01

source_name: SARS-COV-2- 103

value: Home


title: genomic DNA from peripheral blood OtherInfection 62

description:
OtherInfection+ peripheral blood sample
204658390020_R04C01

value: other infection

value: White


title: genomic DNA from peripheral blood SARS-COV-2- 229

description:
SARS-COV-2- peripheral blood sample
204658390019_R08C01

source_name: SARS-COV-2- 229

value: Hispanic or Latino

value: No


title: genomic DNA from peripheral blood OtherInfection 35

description:
OtherInfection+ peripheral blood sample
204658390020_R02C01


title: genomic DNA from peripheral blood SARS-COV-2- 245

description:
SARS-COV-2- peripheral blood sample
204658390019_R06C01

source_name: SARS-COV-2- 245


title: genomic DNA from peripheral blood SARS-COV-2+ 110

description:
SARS-COV-2+ peripheral blood sample
204658390019_R07C01

source_name: SARS-COV-2+ 110


title: genomic DNA from peripheral blood SARS-COV-2+ 133

description:
SARS-COV-2+ peripheral blood sample
204658390020_R01C01

source_name: SARS-COV-2+ 133


title: genomic DNA from peripheral blood SARS-COV-2+ 60

description:
SARS-COV-2+ peripheral blood sample
204658390020_R03C01

source_name: SARS-COV-2+ 60


title: genomic DNA from peripheral blood SARS-COV-2- 276

description:
SARS-COV-2- peripheral blood sample
204658390019_R03C01

source_name: SARS-COV-2- 276


title: genomic DNA from peripheral blood SARS-COV-2- 241

description:
SARS-COV-2- peripheral blood sample
204658390019_R02C01

source_name: SARS-COV-2- 241


title: genomic DNA from peripheral blood OtherInfection 43

description:
OtherInfection+ peripheral blood sample
204658390018_R08C01


title: genomic DNA from peripheral blood OtherInfection 47

description:
OtherInfection+ peripheral blood sample
204658390018_R04C01


title: genomic DNA from peripheral blood SARS-COV-2+ 115

description:
SARS-COV-2+ peripheral blood sample
204658390019_R01C01

source_name: SARS-COV-2+ 115


title: genomic DNA from peripheral blood OtherInfection 40

description:
OtherInfection+ peripheral blood sample
204658390018_R01C01


title: genomic DNA from peripheral blood SARS-COV-2- 96

description:
SARS-COV-2- peripheral blood sample
204658390018_R06C01

source_name: SARS-COV-2- 96


title: genomic DNA from peripheral blood SARS-COV-2+ 108

description:
SARS-COV-2+ peripheral blood sample
204658390018_R07C01

source_name: SARS-COV-2+ 108


title: genomic DNA from peripheral blood SARS-COV-2+ 106

description:
SARS-COV-2+ peripheral blood sample
204658390018_R03C01

source_name: SARS-COV-2+ 106


title: genomic DNA from peripheral blood SARS-COV-2- 240

description:
SARS-COV-2- peripheral blood sample
204658390017_R07C01

source_name: SARS-COV-2- 240


title: genomic DNA from peripheral blood SARS-COV-2- 223

description:
SARS-COV-2- peripheral blood sample
204658390017_R08C01

source_name: SARS-COV-2- 223


title: genomic DNA from peripheral blood SARS-COV-2- 205

description:
SARS-COV-2- peripheral blood sample
204658390017_R01C01

source_name: SARS-COV-2- 205


title: genomic DNA from peripheral blood SARS-COV-2- 285

description:
SARS-COV-2- peripheral blood sample
204658390016_R07C01

source_name: SARS-COV-2- 285

value: Yes


title: genomic DNA from peripheral blood SARS-COV-2- 230

description:
SARS-COV-2- peripheral blood sample
204658390017_R02C01

source_name: SARS-COV-2- 230


title: genomic DNA from peripheral blood SARS-COV-2+ 132

description:
SARS-COV-2+ peripheral blood sample
204658390016_R04C01

source_name: SARS-COV-2+ 132


title: genomic DNA from peripheral blood SARS-COV-2- 224

description:
SARS-COV-2- peripheral blood sample
204658390017_R03C01

source_name: SARS-COV-2- 224


title: genomic DNA from peripheral blood SARS-COV-2- 215

description:
SARS-COV-2- peripheral blood sample
204658390017_R04C01

source_name: SARS-COV-2- 215

value: BlackorAA


title: genomic DNA from peripheral blood SARS-COV-2- 283

description:
SARS-COV-2- peripheral blood sample
204658390016_R05C01

source_name: SARS-COV-2- 283


title: genomic DNA from peripheral blood SARS-COV-2+ 138

description:
SARS-COV-2+ peripheral blood sample
204658390016_R06C01

source_name: SARS-COV-2+ 138

value: Male

value: ICU

value: Death


title: genomic DNA from peripheral blood SARS-COV-2- 201

description:
SARS-COV-2- peripheral blood sample
204658390015_R08C01

source_name: SARS-COV-2- 201

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2- 265

description:
SARS-COV-2- peripheral blood sample
204658390019_R04C01

source_name: SARS-COV-2- 265

value: negative


title: genomic DNA from peripheral blood SARS-COV-2- 282

description:
SARS-COV-2- peripheral blood sample
204658390016_R01C01

source_name: SARS-COV-2- 282

value: Other


title: genomic DNA from peripheral blood SARS-COV-2+ 124

description:
SARS-COV-2+ peripheral blood sample
204658390015_R07C01

source_name: SARS-COV-2+ 124

value: positive


title: genomic DNA from peripheral blood SARS-COV-2- 226

description:
SARS-COV-2- peripheral blood sample
204658390015_R06C01

source_name: SARS-COV-2- 226

value: Not Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2- 117

description:
SARS-COV-2- peripheral blood sample
204658390015_R05C01

source_name: SARS-COV-2- 117

value: No Panel

value: Discharged


title: genomic DNA from peripheral blood SARS-COV-2- 271

description:
SARS-COV-2- peripheral blood sample
204658390016_R03C01

source_name: SARS-COV-2- 271

value: Female


title: genomic DNA from peripheral blood SARS-COV-2+ 111

description:
SARS-COV-2+ peripheral blood sample
204658390015_R04C01

source_name: SARS-COV-2+ 111

value: Home


title: genomic DNA from peripheral blood OtherInfection 42

description:
OtherInfection+ peripheral blood sample
204658390018_R02C01

value: other infection

value: White


title: genomic DNA from peripheral blood SARS-COV-2- 249

description:
SARS-COV-2- peripheral blood sample
204658390015_R01C01

source_name: SARS-COV-2- 249

value: No


title: genomic DNA from peripheral blood SARS-COV-2- 99

description:
SARS-COV-2- peripheral blood sample
204658390018_R05C01

source_name: SARS-COV-2- 99

value: Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2- 221

description:
SARS-COV-2- peripheral blood sample
204658390015_R03C01

source_name: SARS-COV-2- 221


title: genomic DNA from peripheral blood SARS-COV-2- 227

description:
SARS-COV-2- peripheral blood sample
204658390017_R05C01

source_name: SARS-COV-2- 227


title: genomic DNA from peripheral blood SARS-COV-2- 210

description:
SARS-COV-2- peripheral blood sample
204658390014_R08C01

source_name: SARS-COV-2- 210

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood SARS-COV-2- 258

description:
SARS-COV-2- peripheral blood sample
204658390014_R06C01

source_name: SARS-COV-2- 258


title: genomic DNA from peripheral blood SARS-COV-2- 278

description:
SARS-COV-2- peripheral blood sample
204658390014_R07C01

source_name: SARS-COV-2- 278

value: Male

value: BlackorAA

value: Yes


title: genomic DNA from peripheral blood SARS-COV-2- 253

description:
SARS-COV-2- peripheral blood sample
204658390014_R04C01

source_name: SARS-COV-2- 253

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2- 119

description:
SARS-COV-2- peripheral blood sample
204658390013_R07C01

source_name: SARS-COV-2- 119

value: negative


title: genomic DNA from peripheral blood SARS-COV-2- 250

description:
SARS-COV-2- peripheral blood sample
204658390013_R06C01

source_name: SARS-COV-2- 250

value: Other


title: genomic DNA from peripheral blood SARS-COV-2- 257

description:
SARS-COV-2- peripheral blood sample
204658390014_R01C01

source_name: SARS-COV-2- 257


title: genomic DNA from peripheral blood SARS-COV-2- 212

description:
SARS-COV-2- peripheral blood sample
204658390014_R02C01

source_name: SARS-COV-2- 212


title: genomic DNA from peripheral blood SARS-COV-2- 193

description:
SARS-COV-2- peripheral blood sample
204658390013_R05C01

source_name: SARS-COV-2- 193


title: genomic DNA from peripheral blood SARS-COV-2- 202

description:
SARS-COV-2- peripheral blood sample
204658390013_R04C01

source_name: SARS-COV-2- 202


title: genomic DNA from peripheral blood SARS-COV-2- 254

description:
SARS-COV-2- peripheral blood sample
204658390013_R03C01

source_name: SARS-COV-2- 254


title: genomic DNA from peripheral blood SARS-COV-2+ 114

description:
SARS-COV-2+ peripheral blood sample
204658390012_R08C01

source_name: SARS-COV-2+ 114

value: positive


title: genomic DNA from peripheral blood SARS-COV-2- 234

description:
SARS-COV-2- peripheral blood sample
204658390013_R02C01

source_name: SARS-COV-2- 234

value: Not Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2+ 72

description:
SARS-COV-2+ peripheral blood sample
204658390014_R05C01

source_name: SARS-COV-2+ 72

value: Asian

value: No Panel

value: Death


title: genomic DNA from peripheral blood SARS-COV-2- 243

description:
SARS-COV-2- peripheral blood sample
204658390012_R07C01

source_name: SARS-COV-2- 243

value: Female

value: Discharged


title: genomic DNA from peripheral blood SARS-COV-2- 220

description:
SARS-COV-2- peripheral blood sample
204658390012_R06C01

source_name: SARS-COV-2- 220

value: White

value: Home


title: genomic DNA from peripheral blood SARS-COV-2+ 125

description:
SARS-COV-2+ peripheral blood sample
204658390012_R02C01

source_name: SARS-COV-2+ 125

value: No


title: genomic DNA from peripheral blood SARS-COV-2- 217

description:
SARS-COV-2- peripheral blood sample
204658390012_R03C01

source_name: SARS-COV-2- 217

value: Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2- 191

description:
SARS-COV-2- peripheral blood sample
204658390011_R08C01

source_name: SARS-COV-2- 191


title: genomic DNA from peripheral blood SARS-COV-2+ 123

description:
SARS-COV-2+ peripheral blood sample
204658390011_R07C01

source_name: SARS-COV-2+ 123

value: Male


title: genomic DNA from peripheral blood SARS-COV-2- 255

description:
SARS-COV-2- peripheral blood sample
204658390012_R05C01

source_name: SARS-COV-2- 255

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood SARS-COV-2- 222

description:
SARS-COV-2- peripheral blood sample
204658390011_R05C01

source_name: SARS-COV-2- 222


title: genomic DNA from peripheral blood OtherInfection 10

description:
OtherInfection+ peripheral blood sample
204658390010_R05C01

value: other infection


title: genomic DNA from peripheral blood SARS-COV-2+ 130

description:
SARS-COV-2+ peripheral blood sample
204658390010_R06C01

source_name: SARS-COV-2+ 130

value: Yes

value: ICU


title: genomic DNA from peripheral blood SARS-COV-2- 208

description:
SARS-COV-2- peripheral blood sample
204658390011_R01C01

source_name: SARS-COV-2- 208

value: negative

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2- 251

description:
SARS-COV-2- peripheral blood sample
204658390012_R04C01

source_name: SARS-COV-2- 251

value: Not Hispanic or Latino

value: Other


title: genomic DNA from peripheral blood SARS-COV-2- 244

description:
SARS-COV-2- peripheral blood sample
204658390012_R01C01

source_name: SARS-COV-2- 244

value: No Panel


title: genomic DNA from peripheral blood SARS-COV-2- 190

description:
SARS-COV-2- peripheral blood sample
204658390011_R06C01

source_name: SARS-COV-2- 190

value: BlackorAA


title: genomic DNA from peripheral blood SARS-COV-2- 252

description:
SARS-COV-2- peripheral blood sample
204658390011_R03C01

source_name: SARS-COV-2- 252


title: genomic DNA from peripheral blood SARS-COV-2+ 75

description:
SARS-COV-2+ peripheral blood sample
204658390009_R08C01

source_name: SARS-COV-2+ 75

value: positive

value: Female


title: genomic DNA from peripheral blood OtherInfection 13

description:
OtherInfection+ peripheral blood sample
204658390010_R08C01

value: White


title: genomic DNA from peripheral blood SARS-COV-2+ 62

description:
SARS-COV-2+ peripheral blood sample
204658390009_R06C01

source_name: SARS-COV-2+ 62

value: Discharged

value: Home


title: genomic DNA from peripheral blood SARS-COV-2- 269

description:
SARS-COV-2- peripheral blood sample
204658390010_R07C01

source_name: SARS-COV-2- 269


title: genomic DNA from peripheral blood SARS-COV-2+ 120

description:
SARS-COV-2+ peripheral blood sample
204658390010_R03C01

source_name: SARS-COV-2+ 120

value: No

value: Death


title: genomic DNA from peripheral blood SARS-COV-2+ 63

description:
SARS-COV-2+ peripheral blood sample
204658390009_R03C01

source_name: SARS-COV-2+ 63

value: Male

value: Hispanic or Latino


title: genomic DNA from peripheral blood OtherInfection 23

description:
OtherInfection+ peripheral blood sample
204658390010_R01C01

value: other infection


title: genomic DNA from peripheral blood OtherInfection 33

description:
OtherInfection+ peripheral blood sample
204658390008_R05C01


title: genomic DNA from peripheral blood SARS-COV-2+ 71

description:
SARS-COV-2+ peripheral blood sample
204658390008_R01C01

source_name: SARS-COV-2+ 71


title: genomic DNA from peripheral blood OtherInfection 61

description:
OtherInfection+ peripheral blood sample
204658390008_R03C01


title: genomic DNA from peripheral blood OtherInfection 63

description:
OtherInfection+ peripheral blood sample
204658390009_R04C01


title: genomic DNA from peripheral blood SARS-COV-2- 111

description:
SARS-COV-2- peripheral blood sample
204658390009_R07C01

source_name: SARS-COV-2- 111


title: genomic DNA from peripheral blood OtherInfection 49

description:
OtherInfection+ peripheral blood sample
204658390008_R04C01

value: Yes


title: genomic DNA from peripheral blood SARS-COV-2+ 74

description:
SARS-COV-2+ peripheral blood sample
204658390008_R07C01

source_name: SARS-COV-2+ 74


title: genomic DNA from peripheral blood SARS-COV-2- 104

description:
SARS-COV-2- peripheral blood sample
204658390009_R05C01

source_name: SARS-COV-2- 104

value: negative


title: genomic DNA from peripheral blood OtherInfection 31

description:
OtherInfection+ peripheral blood sample
204658390009_R02C01


title: genomic DNA from peripheral blood OtherInfection 52

description:
OtherInfection+ peripheral blood sample
204658390009_R01C01

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2- 266

description:
SARS-COV-2- peripheral blood sample
204658390010_R02C01

source_name: SARS-COV-2- 266

value: Not Hispanic or Latino

value: ICU


title: genomic DNA from peripheral blood SARS-COV-2- 113

description:
SARS-COV-2- peripheral blood sample
204658390003_R08C01

source_name: SARS-COV-2- 113

value: No Panel

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood OtherInfection 38

description:
OtherInfection+ peripheral blood sample
204658390003_R05C01


title: genomic DNA from peripheral blood SARS-COV-2- 97

description:
SARS-COV-2- peripheral blood sample
204658390003_R02C01

source_name: SARS-COV-2- 97


title: genomic DNA from peripheral blood SARS-COV-2- 195

description:
SARS-COV-2- peripheral blood sample
204658390002_R02C01

source_name: SARS-COV-2- 195


title: genomic DNA from peripheral blood SARS-COV-2- 200

description:
SARS-COV-2- peripheral blood sample
204658390003_R03C01

source_name: SARS-COV-2- 200


title: genomic DNA from peripheral blood SARS-COV-2- 209

description:
SARS-COV-2- peripheral blood sample
204658390002_R03C01

source_name: SARS-COV-2- 209


title: genomic DNA from peripheral blood SARS-COV-2- 219

description:
SARS-COV-2- peripheral blood sample
204658390002_R06C01

source_name: SARS-COV-2- 219


title: genomic DNA from peripheral blood SARS-COV-2- 198

description:
SARS-COV-2- peripheral blood sample
204658390003_R04C01

source_name: SARS-COV-2- 198


title: genomic DNA from peripheral blood SARS-COV-2- 242

description:
SARS-COV-2- peripheral blood sample
204658390001_R07C01

source_name: SARS-COV-2- 242


title: genomic DNA from peripheral blood SARS-COV-2- 203

description:
SARS-COV-2- peripheral blood sample
204658390011_R02C01

source_name: SARS-COV-2- 203


title: genomic DNA from peripheral blood SARS-COV-2- 246

description:
SARS-COV-2- peripheral blood sample
204658390001_R08C01

source_name: SARS-COV-2- 246


title: genomic DNA from peripheral blood SARS-COV-2+ 117

description:
SARS-COV-2+ peripheral blood sample
204658390001_R06C01

source_name: SARS-COV-2+ 117

value: positive

value: Other


title: genomic DNA from peripheral blood SARS-COV-2+ 119

description:
SARS-COV-2+ peripheral blood sample
204658390002_R01C01

source_name: SARS-COV-2+ 119

value: Female


title: genomic DNA from peripheral blood SARS-COV-2- 275

description:
SARS-COV-2- peripheral blood sample
204658390001_R05C01

source_name: SARS-COV-2- 275

value: Asian


title: genomic DNA from peripheral blood SARS-COV-2- 277

description:
SARS-COV-2- peripheral blood sample
204658390001_R03C01

source_name: SARS-COV-2- 277

value: White


title: genomic DNA from peripheral blood SARS-COV-2- 42

description:
SARS-COV-2- peripheral blood sample
204500250059_R08C01

source_name: SARS-COV-2- 42

value: Home


title: genomic DNA from peripheral blood SARS-COV-2- 247

description:
SARS-COV-2- peripheral blood sample
204658390002_R04C01

source_name: SARS-COV-2- 247

value: No


title: genomic DNA from peripheral blood SARS-COV-2- 47

description:
SARS-COV-2- peripheral blood sample
204500250059_R04C01

source_name: SARS-COV-2- 47

value: Male


title: genomic DNA from peripheral blood SARS-COV-2- 218

description:
SARS-COV-2- peripheral blood sample
204658390001_R01C01

source_name: SARS-COV-2- 218


title: genomic DNA from peripheral blood SARS-COV-2+ 87

description:
SARS-COV-2+ peripheral blood sample
204500250059_R07C01

source_name: SARS-COV-2+ 87

value: Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2- 46

description:
SARS-COV-2- peripheral blood sample
204500250060_R05C01

source_name: SARS-COV-2- 46


title: genomic DNA from peripheral blood SARS-COV-2- 44

description:
SARS-COV-2- peripheral blood sample
204500250059_R02C01

source_name: SARS-COV-2- 44

value: BlackorAA


title: genomic DNA from peripheral blood SARS-COV-2- 181

description:
SARS-COV-2- peripheral blood sample
204500250059_R01C01

source_name: SARS-COV-2- 181

value: Yes


title: genomic DNA from peripheral blood SARS-COV-2- 48

description:
SARS-COV-2- peripheral blood sample
204500250057_R06C01

source_name: SARS-COV-2- 48

value: negative


title: genomic DNA from peripheral blood SARS-COV-2- 239

description:
SARS-COV-2- peripheral blood sample
204658390001_R02C01

source_name: SARS-COV-2- 239

value: Discharged


title: genomic DNA from peripheral blood SARS-COV-2- 140

description:
SARS-COV-2- peripheral blood sample
204500250056_R07C01

source_name: SARS-COV-2- 140


title: genomic DNA from peripheral blood SARS-COV-2- 121

description:
SARS-COV-2- peripheral blood sample
204500250056_R05C01

source_name: SARS-COV-2- 121

value: Not Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2+ 78

description:
SARS-COV-2+ peripheral blood sample
204500250056_R06C01

source_name: SARS-COV-2+ 78

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2- 73

description:
SARS-COV-2- peripheral blood sample
204500250056_R01C01

source_name: SARS-COV-2- 73

value: No Panel


title: genomic DNA from peripheral blood SARS-COV-2+ 80

description:
SARS-COV-2+ peripheral blood sample
204500250056_R03C01

source_name: SARS-COV-2+ 80


title: genomic DNA from peripheral blood SARS-COV-2- 39

description:
SARS-COV-2- peripheral blood sample
204500250056_R08C01

source_name: SARS-COV-2- 39


title: genomic DNA from peripheral blood SARS-COV-2+ 56

description:
SARS-COV-2+ peripheral blood sample
204500250055_R08C01

source_name: SARS-COV-2+ 56

value: ICU

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood SARS-COV-2- 81

description:
SARS-COV-2- peripheral blood sample
204500250059_R06C01

source_name: SARS-COV-2- 81


title: genomic DNA from peripheral blood SARS-COV-2- 127

description:
SARS-COV-2- peripheral blood sample
204500250055_R07C01

source_name: SARS-COV-2- 127


title: genomic DNA from peripheral blood SARS-COV-2+ 86

description:
SARS-COV-2+ peripheral blood sample
204500250054_R07C01

source_name: SARS-COV-2+ 86

value: positive

value: Other


title: genomic DNA from peripheral blood SARS-COV-2- 165

description:
SARS-COV-2- peripheral blood sample
204500250055_R06C01

source_name: SARS-COV-2- 165


title: genomic DNA from peripheral blood SARS-COV-2- 72

description:
SARS-COV-2- peripheral blood sample
204500250054_R01C01

source_name: SARS-COV-2- 72

value: Female


title: genomic DNA from peripheral blood SARS-COV-2+ 83

description:
SARS-COV-2+ peripheral blood sample
204500250055_R05C01

source_name: SARS-COV-2+ 83


title: genomic DNA from peripheral blood SARS-COV-2- 149

description:
SARS-COV-2- peripheral blood sample
204500250052_R07C01

source_name: SARS-COV-2- 149


title: genomic DNA from peripheral blood SARS-COV-2- 188

description:
SARS-COV-2- peripheral blood sample
204500250052_R08C01

source_name: SARS-COV-2- 188

value: White


title: genomic DNA from peripheral blood SARS-COV-2- 51

description:
SARS-COV-2- peripheral blood sample
204500250055_R03C01

source_name: SARS-COV-2- 51

value: Home


title: genomic DNA from peripheral blood SARS-COV-2- 65

description:
SARS-COV-2- peripheral blood sample
204500250054_R08C01

source_name: SARS-COV-2- 65


title: genomic DNA from peripheral blood SARS-COV-2- 57

description:
SARS-COV-2- peripheral blood sample
204500250055_R01C01

source_name: SARS-COV-2- 57

value: No


title: genomic DNA from peripheral blood SARS-COV-2- 189

description:
SARS-COV-2- peripheral blood sample
204500250054_R04C01

source_name: SARS-COV-2- 189


title: genomic DNA from peripheral blood SARS-COV-2+ 59

description:
SARS-COV-2+ peripheral blood sample
204500250052_R03C01

source_name: SARS-COV-2+ 59

value: AmericanIndianorAlaskanNative


title: genomic DNA from peripheral blood SARS-COV-2+ 43

description:
SARS-COV-2+ peripheral blood sample
204500250052_R02C01

source_name: SARS-COV-2+ 43

value: Male


title: genomic DNA from peripheral blood SARS-COV-2+ 81

description:
SARS-COV-2+ peripheral blood sample
204500250051_R07C01

source_name: SARS-COV-2+ 81


title: genomic DNA from peripheral blood SARS-COV-2- 145

description:
SARS-COV-2- peripheral blood sample
204500250052_R01C01

source_name: SARS-COV-2- 145

value: BlackorAA


title: genomic DNA from peripheral blood SARS-COV-2- 92

description:
SARS-COV-2- peripheral blood sample
204500250051_R04C01

source_name: SARS-COV-2- 92

value: Yes


title: genomic DNA from peripheral blood SARS-COV-2- 153

description:
SARS-COV-2- peripheral blood sample
204500250051_R08C01

source_name: SARS-COV-2- 153

value: negative


title: genomic DNA from peripheral blood SARS-COV-2+ 57

description:
SARS-COV-2+ peripheral blood sample
204500250060_R08C01

source_name: SARS-COV-2+ 57

value: NativeHawaiianorPacificIslander

value: Death


title: genomic DNA from peripheral blood SARS-COV-2- 131

description:
SARS-COV-2- peripheral blood sample
204500250051_R01C01

source_name: SARS-COV-2- 131

value: Not Hispanic or Latino

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2- 8

description:
SARS-COV-2- peripheral blood sample
204500250050_R07C01

source_name: SARS-COV-2- 8

value: No Panel


title: genomic DNA from peripheral blood SARS-COV-2- 138

description:
SARS-COV-2- peripheral blood sample
204500250051_R03C01

source_name: SARS-COV-2- 138

value: Discharged


title: genomic DNA from peripheral blood OtherInfection 1

description:
OtherInfection+ peripheral blood sample
204500250050_R04C01

value: other infection

value: ICU


title: genomic DNA from peripheral blood SARS-COV-2+ 50

description:
SARS-COV-2+ peripheral blood sample
204500250049_R07C01

source_name: SARS-COV-2+ 50

value: positive

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood OtherInfection 4

description:
OtherInfection+ peripheral blood sample
204500250050_R01C01

value: Female

value: White

value: Home


title: genomic DNA from peripheral blood SARS-COV-2- 75

description:
SARS-COV-2- peripheral blood sample
204500250051_R02C01

source_name: SARS-COV-2- 75

value: Male


title: genomic DNA from peripheral blood SARS-COV-2- 27

description:
SARS-COV-2- peripheral blood sample
204500250048_R08C01

source_name: SARS-COV-2- 27

value: No


title: genomic DNA from peripheral blood SARS-COV-2+ 34

description:
SARS-COV-2+ peripheral blood sample
204500250050_R06C01

source_name: SARS-COV-2+ 34

value: Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2- 170

description:
SARS-COV-2- peripheral blood sample
204500250049_R03C01

source_name: SARS-COV-2- 170

value: negative


title: genomic DNA from peripheral blood SARS-COV-2+ 2

description:
SARS-COV-2+ peripheral blood sample
204500250048_R03C01

source_name: SARS-COV-2+ 2

value: Asian


title: genomic DNA from peripheral blood SARS-COV-2- 18

description:
SARS-COV-2- peripheral blood sample
204500250048_R02C01

source_name: SARS-COV-2- 18

value: BlackorAA


title: genomic DNA from peripheral blood SARS-COV-2+ 15

description:
SARS-COV-2+ peripheral blood sample
204500250050_R02C01

source_name: SARS-COV-2+ 15


title: genomic DNA from peripheral blood SARS-COV-2+ 58

description:
SARS-COV-2+ peripheral blood sample
204500250049_R08C01

source_name: SARS-COV-2+ 58

value: Not Hispanic or Latino

value: Yes


title: genomic DNA from peripheral blood OtherInfection 58

description:
OtherInfection+ peripheral blood sample
204658390003_R07C01


title: genomic DNA from peripheral blood SARS-COV-2- 180

description:
SARS-COV-2- peripheral blood sample
204500250049_R05C01

source_name: SARS-COV-2- 180

value: No Panel

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2+ 23

description:
SARS-COV-2+ peripheral blood sample
204500250047_R07C01

source_name: SARS-COV-2+ 23


title: genomic DNA from peripheral blood OtherInfection 39

description:
OtherInfection+ peripheral blood sample
204658390003_R06C01

value: other infection

value: Other

value: Discharged


title: genomic DNA from peripheral blood SARS-COV-2- 163

description:
SARS-COV-2- peripheral blood sample
204500250051_R06C01

source_name: SARS-COV-2- 163


title: genomic DNA from peripheral blood SARS-COV-2- 169

description:
SARS-COV-2- peripheral blood sample
204500250049_R02C01

source_name: SARS-COV-2- 169


title: genomic DNA from peripheral blood SARS-COV-2+ 38

description:
SARS-COV-2+ peripheral blood sample
204500250047_R06C01

source_name: SARS-COV-2+ 38

value: positive


title: genomic DNA from peripheral blood SARS-COV-2+ 32

description:
SARS-COV-2+ peripheral blood sample
204500250048_R07C01

source_name: SARS-COV-2+ 32

value: Female


title: genomic DNA from peripheral blood SARS-COV-2+ 85

description:
SARS-COV-2+ peripheral blood sample
204500250049_R01C01

source_name: SARS-COV-2+ 85


title: genomic DNA from peripheral blood SARS-COV-2- 7

description:
SARS-COV-2- peripheral blood sample
204500250047_R03C01

source_name: SARS-COV-2- 7


title: genomic DNA from peripheral blood SARS-COV-2- 3

description:
SARS-COV-2- peripheral blood sample
204500250047_R08C01

source_name: SARS-COV-2- 3

value: White


title: genomic DNA from peripheral blood SARS-COV-2- 156

description:
SARS-COV-2- peripheral blood sample
204500250051_R05C01

source_name: SARS-COV-2- 156

value: Home


title: genomic DNA from peripheral blood SARS-COV-2+ 41

description:
SARS-COV-2+ peripheral blood sample
204500250048_R05C01

source_name: SARS-COV-2+ 41

value: Male


title: genomic DNA from peripheral blood SARS-COV-2+ 5

description:
SARS-COV-2+ peripheral blood sample
204500250050_R08C01

source_name: SARS-COV-2+ 5

value: No


title: genomic DNA from peripheral blood SARS-COV-2- 34

description:
SARS-COV-2- peripheral blood sample
204500250050_R05C01

source_name: SARS-COV-2- 34


title: genomic DNA from peripheral blood SARS-COV-2- 1

description:
SARS-COV-2- peripheral blood sample
204500250047_R01C01

source_name: SARS-COV-2- 1

value: Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2+ 28

description:
SARS-COV-2+ peripheral blood sample
204500250048_R04C01

source_name: SARS-COV-2+ 28


title: genomic DNA from peripheral blood SARS-COV-2- 15

description:
SARS-COV-2- peripheral blood sample
204500250048_R01C01

source_name: SARS-COV-2- 15

value: negative


title: genomic DNA from peripheral blood SARS-COV-2+ 35

description:
SARS-COV-2+ peripheral blood sample
204500250047_R05C01

source_name: SARS-COV-2+ 35


title: genomic DNA from peripheral blood OtherInfection 3

description:
OtherInfection+ peripheral blood sample
204500250047_R04C01

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood OtherInfection 6

description:
OtherInfection+ peripheral blood sample
204500250046_R01C01

value: BlackorAA


title: genomic DNA from peripheral blood SARS-COV-2- 126

description:
SARS-COV-2- peripheral blood sample
204500250045_R02C01

source_name: SARS-COV-2- 126

value: Not Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2- 88

description:
SARS-COV-2- peripheral blood sample
204500250046_R07C01

source_name: SARS-COV-2- 88


title: genomic DNA from peripheral blood SARS-COV-2+ 79

description:
SARS-COV-2+ peripheral blood sample
204500250044_R07C01

source_name: SARS-COV-2+ 79

value: Yes

value: ICU


title: genomic DNA from peripheral blood SARS-COV-2- 93

description:
SARS-COV-2- peripheral blood sample
204500250044_R06C01

source_name: SARS-COV-2- 93


title: genomic DNA from peripheral blood SARS-COV-2- 132

description:
SARS-COV-2- peripheral blood sample
204500250046_R04C01

source_name: SARS-COV-2- 132

value: No Panel

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2- 166

description:
SARS-COV-2- peripheral blood sample
204500250046_R02C01

source_name: SARS-COV-2- 166


title: genomic DNA from peripheral blood SARS-COV-2+ 49

description:
SARS-COV-2+ peripheral blood sample
204500250045_R07C01

source_name: SARS-COV-2+ 49


title: genomic DNA from peripheral blood SARS-COV-2- 168

description:
SARS-COV-2- peripheral blood sample
204500250045_R03C01

source_name: SARS-COV-2- 168

value: Other


title: genomic DNA from peripheral blood SARS-COV-2- 52

description:
SARS-COV-2- peripheral blood sample
204500250045_R04C01

source_name: SARS-COV-2- 52


title: genomic DNA from peripheral blood SARS-COV-2- 148

description:
SARS-COV-2- peripheral blood sample
204500250043_R06C01

source_name: SARS-COV-2- 148


title: genomic DNA from peripheral blood SARS-COV-2- 133

description:
SARS-COV-2- peripheral blood sample
204500250046_R06C01

source_name: SARS-COV-2- 133


title: genomic DNA from peripheral blood SARS-COV-2- 160

description:
SARS-COV-2- peripheral blood sample
204500250042_R08C01

source_name: SARS-COV-2- 160

value: Discharged


title: genomic DNA from peripheral blood SARS-COV-2- 94

description:
SARS-COV-2- peripheral blood sample
204500250043_R03C01

source_name: SARS-COV-2- 94

value: AmericanIndianorAlaskanNative


title: genomic DNA from peripheral blood SARS-COV-2- 71

description:
SARS-COV-2- peripheral blood sample
204500250042_R04C01

source_name: SARS-COV-2- 71

value: Female


title: genomic DNA from peripheral blood SARS-COV-2- 158

description:
SARS-COV-2- peripheral blood sample
204500250045_R01C01

source_name: SARS-COV-2- 158

value: White


title: genomic DNA from peripheral blood SARS-COV-2- 167

description:
SARS-COV-2- peripheral blood sample
204500250044_R08C01

source_name: SARS-COV-2- 167


title: genomic DNA from peripheral blood SARS-COV-2- 236

description:
SARS-COV-2- peripheral blood sample
204658390002_R08C01

source_name: SARS-COV-2- 236


title: genomic DNA from peripheral blood SARS-COV-2+ 36

description:
SARS-COV-2+ peripheral blood sample
204500250047_R02C01

source_name: SARS-COV-2+ 36

value: positive

value: Home


title: genomic DNA from peripheral blood SARS-COV-2+ 103

description:
SARS-COV-2+ peripheral blood sample
204658390003_R01C01

source_name: SARS-COV-2+ 103

value: No


title: genomic DNA from peripheral blood SARS-COV-2- 80

description:
SARS-COV-2- peripheral blood sample
204500250044_R05C01

source_name: SARS-COV-2- 80

value: Male


title: genomic DNA from peripheral blood SARS-COV-2+ 55

description:
SARS-COV-2+ peripheral blood sample
204500250044_R02C01

source_name: SARS-COV-2+ 55


title: genomic DNA from peripheral blood SARS-COV-2+ 53

description:
SARS-COV-2+ peripheral blood sample
204500250044_R01C01

source_name: SARS-COV-2+ 53


title: genomic DNA from peripheral blood SARS-COV-2- 69

description:
SARS-COV-2- peripheral blood sample
204500250046_R08C01

source_name: SARS-COV-2- 69

value: negative


title: genomic DNA from peripheral blood SARS-COV-2+ 90

description:
SARS-COV-2+ peripheral blood sample
204500250040_R03C01

source_name: SARS-COV-2+ 90

value: Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2- 78

description:
SARS-COV-2- peripheral blood sample
204500250043_R01C01

source_name: SARS-COV-2- 78


title: genomic DNA from peripheral blood SARS-COV-2- 139

description:
SARS-COV-2- peripheral blood sample
204500250042_R03C01

source_name: SARS-COV-2- 139


title: genomic DNA from peripheral blood SARS-COV-2- 50

description:
SARS-COV-2- peripheral blood sample
204500250037_R03C01

source_name: SARS-COV-2- 50


title: genomic DNA from peripheral blood SARS-COV-2+ 21

description:
SARS-COV-2+ peripheral blood sample
204500250036_R08C01

source_name: SARS-COV-2+ 21

value: BlackorAA


title: genomic DNA from peripheral blood SARS-COV-2- 176

description:
SARS-COV-2- peripheral blood sample
204500250042_R01C01

source_name: SARS-COV-2- 176

value: Not Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2- 137

description:
SARS-COV-2- peripheral blood sample
204500250040_R07C01

source_name: SARS-COV-2- 137


title: genomic DNA from peripheral blood SARS-COV-2- 152

description:
SARS-COV-2- peripheral blood sample
204500250040_R04C01

source_name: SARS-COV-2- 152


title: genomic DNA from peripheral blood SARS-COV-2- 175

description:
SARS-COV-2- peripheral blood sample
204500250042_R02C01

source_name: SARS-COV-2- 175

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood SARS-COV-2- 43

description:
SARS-COV-2- peripheral blood sample
204500250038_R02C01

source_name: SARS-COV-2- 43

value: Yes

value: ICU


title: genomic DNA from peripheral blood SARS-COV-2+ 89

description:
SARS-COV-2+ peripheral blood sample
204500250039_R06C01

source_name: SARS-COV-2+ 89

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2- 6

description:
SARS-COV-2- peripheral blood sample
204500250036_R02C01

source_name: SARS-COV-2- 6


title: genomic DNA from peripheral blood SARS-COV-2- 182

description:
SARS-COV-2- peripheral blood sample
204500250037_R05C01

source_name: SARS-COV-2- 182

value: No Panel


title: genomic DNA from peripheral blood SARS-COV-2- 155

description:
SARS-COV-2- peripheral blood sample
204500250037_R07C01

source_name: SARS-COV-2- 155


title: genomic DNA from peripheral blood SARS-COV-2+ 46

description:
SARS-COV-2+ peripheral blood sample
204500250037_R02C01

source_name: SARS-COV-2+ 46

value: Other


title: genomic DNA from peripheral blood SARS-COV-2+ 122

description:
SARS-COV-2+ peripheral blood sample
204658390002_R07C01

source_name: SARS-COV-2+ 122


title: genomic DNA from peripheral blood SARS-COV-2- 23

description:
SARS-COV-2- peripheral blood sample
204500250036_R03C01

source_name: SARS-COV-2- 23


title: genomic DNA from peripheral blood SARS-COV-2- 60

description:
SARS-COV-2- peripheral blood sample
204500250035_R04C01

source_name: SARS-COV-2- 60


title: genomic DNA from peripheral blood SARS-COV-2- 10

description:
SARS-COV-2- peripheral blood sample
204500250036_R07C01

source_name: SARS-COV-2- 10


title: genomic DNA from peripheral blood SARS-COV-2- 173

description:
SARS-COV-2- peripheral blood sample
204500250040_R05C01

source_name: SARS-COV-2- 173


title: genomic DNA from peripheral blood SARS-COV-2- 179

description:
SARS-COV-2- peripheral blood sample
204500250037_R01C01

source_name: SARS-COV-2- 179


title: genomic DNA from peripheral blood SARS-COV-2- 31

description:
SARS-COV-2- peripheral blood sample
204500250036_R05C01

source_name: SARS-COV-2- 31

value: Discharged


title: genomic DNA from peripheral blood SARS-COV-2- 187

description:
SARS-COV-2- peripheral blood sample
204500250035_R02C01

source_name: SARS-COV-2- 187

value: Female


title: genomic DNA from peripheral blood SARS-COV-2+ 19

description:
SARS-COV-2+ peripheral blood sample
204500250033_R08C01

source_name: SARS-COV-2+ 19

value: Asian


title: genomic DNA from peripheral blood SARS-COV-2- 162

description:
SARS-COV-2- peripheral blood sample
204500250035_R06C01

source_name: SARS-COV-2- 162

value: White


title: genomic DNA from peripheral blood SARS-COV-2+ 40

description:
SARS-COV-2+ peripheral blood sample
204500250036_R06C01

source_name: SARS-COV-2+ 40

value: positive

value: Home


title: genomic DNA from peripheral blood SARS-COV-2+ 1

description:
SARS-COV-2+ peripheral blood sample
204500250036_R04C01

source_name: SARS-COV-2+ 1

value: Male

value: No


title: genomic DNA from peripheral blood SARS-COV-2- 25

description:
SARS-COV-2- peripheral blood sample
204500250033_R07C01

source_name: SARS-COV-2- 25

value: negative

value: Death


title: genomic DNA from peripheral blood SARS-COV-2- 142

description:
SARS-COV-2- peripheral blood sample
204500250038_R08C01

source_name: SARS-COV-2- 142

value: Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2+ 4

description:
SARS-COV-2+ peripheral blood sample
204500250033_R06C01

source_name: SARS-COV-2+ 4


title: genomic DNA from peripheral blood SARS-COV-2+ 118

description:
SARS-COV-2+ peripheral blood sample
204658390001_R04C01

source_name: SARS-COV-2+ 118


title: genomic DNA from peripheral blood SARS-COV-2+ 29

description:
SARS-COV-2+ peripheral blood sample
204500250033_R05C01

source_name: SARS-COV-2+ 29


title: genomic DNA from peripheral blood SARS-COV-2- 38

description:
SARS-COV-2- peripheral blood sample
204500250033_R03C01

source_name: SARS-COV-2- 38

value: Not Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2+ 39

description:
SARS-COV-2+ peripheral blood sample
204500250033_R01C01

source_name: SARS-COV-2+ 39


title: genomic DNA from peripheral blood SARS-COV-2- 49

description:
SARS-COV-2- peripheral blood sample
204500250032_R07C01

source_name: SARS-COV-2- 49


title: genomic DNA from peripheral blood SARS-COV-2- 85

description:
SARS-COV-2- peripheral blood sample
204500250032_R08C01

source_name: SARS-COV-2- 85


title: genomic DNA from peripheral blood SARS-COV-2+ 7

description:
SARS-COV-2+ peripheral blood sample
204500250036_R01C01

source_name: SARS-COV-2+ 7


title: genomic DNA from peripheral blood SARS-COV-2- 135

description:
SARS-COV-2- peripheral blood sample
204500250032_R06C01

source_name: SARS-COV-2- 135


title: genomic DNA from peripheral blood SARS-COV-2- 70

description:
SARS-COV-2- peripheral blood sample
204500250031_R08C01

source_name: SARS-COV-2- 70


title: genomic DNA from peripheral blood SARS-COV-2- 90

description:
SARS-COV-2- peripheral blood sample
204500250054_R02C01

source_name: SARS-COV-2- 90


title: genomic DNA from peripheral blood SARS-COV-2- 41

description:
SARS-COV-2- peripheral blood sample
204500250031_R07C01

source_name: SARS-COV-2- 41

value: BlackorAA


title: genomic DNA from peripheral blood SARS-COV-2+ 76

description:
SARS-COV-2+ peripheral blood sample
204500250032_R03C01

source_name: SARS-COV-2+ 76


title: genomic DNA from peripheral blood SARS-COV-2- 58

description:
SARS-COV-2- peripheral blood sample
204500250031_R03C01

source_name: SARS-COV-2- 58

value: Yes

value: ICU

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood SARS-COV-2- 74

description:
SARS-COV-2- peripheral blood sample
204500250032_R01C01

source_name: SARS-COV-2- 74

value: No Panel

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2- 151

description:
SARS-COV-2- peripheral blood sample
204500250030_R05C01

source_name: SARS-COV-2- 151

value: Other


title: genomic DNA from peripheral blood SARS-COV-2+ 84

description:
SARS-COV-2+ peripheral blood sample
204500250029_R07C01

source_name: SARS-COV-2+ 84

value: Female

value: Asian

value: Discharged


title: genomic DNA from peripheral blood SARS-COV-2- 76

description:
SARS-COV-2- peripheral blood sample
204500250030_R04C01

source_name: SARS-COV-2- 76

value: White

value: Home


title: genomic DNA from peripheral blood SARS-COV-2- 178

description:
SARS-COV-2- peripheral blood sample
204500250031_R06C01

source_name: SARS-COV-2- 178


title: genomic DNA from peripheral blood SARS-COV-2- 24

description:
SARS-COV-2- peripheral blood sample
204500250028_R08C01

source_name: SARS-COV-2- 24

value: No


title: genomic DNA from peripheral blood SARS-COV-2- 136

description:
SARS-COV-2- peripheral blood sample
204500250029_R03C01

source_name: SARS-COV-2- 136

value: negative


title: genomic DNA from peripheral blood SARS-COV-2+ 33

description:
SARS-COV-2+ peripheral blood sample
204500250028_R07C01

source_name: SARS-COV-2+ 33

value: positive

value: Male


title: genomic DNA from peripheral blood SARS-COV-2- 82

description:
SARS-COV-2- peripheral blood sample
204500250029_R05C01

source_name: SARS-COV-2- 82

value: Not Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2- 35

description:
SARS-COV-2- peripheral blood sample
204500250033_R02C01

source_name: SARS-COV-2- 35

value: Hispanic or Latino

value: Death


title: genomic DNA from peripheral blood SARS-COV-2- 83

description:
SARS-COV-2- peripheral blood sample
204500250030_R03C01

source_name: SARS-COV-2- 83

value: Yes

value: ICU


title: genomic DNA from peripheral blood SARS-COV-2- 134

description:
SARS-COV-2- peripheral blood sample
204500250031_R01C01

source_name: SARS-COV-2- 134

value: BlackorAA

value: No Panel


title: genomic DNA from peripheral blood SARS-COV-2+ 24

description:
SARS-COV-2+ peripheral blood sample
204500250028_R06C01

source_name: SARS-COV-2+ 24

value: Other

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2+ 48

description:
SARS-COV-2+ peripheral blood sample
204500250029_R01C01

source_name: SARS-COV-2+ 48

value: Female


title: genomic DNA from peripheral blood SARS-COV-2- 14

description:
SARS-COV-2- peripheral blood sample
204500250028_R05C01

source_name: SARS-COV-2- 14

value: Discharged


title: genomic DNA from peripheral blood SARS-COV-2+ 14

description:
SARS-COV-2+ peripheral blood sample
204500250028_R04C01

source_name: SARS-COV-2+ 14

value: White


title: genomic DNA from peripheral blood SARS-COV-2- 26

description:
SARS-COV-2- peripheral blood sample
204500250028_R01C01

source_name: SARS-COV-2- 26

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood SARS-COV-2- 129

description:
SARS-COV-2- peripheral blood sample
204500250030_R01C01

source_name: SARS-COV-2- 129

value: No

value: Home


title: genomic DNA from peripheral blood SARS-COV-2- 183

description:
SARS-COV-2- peripheral blood sample
204500250029_R04C01

source_name: SARS-COV-2- 183

value: negative


title: genomic DNA from peripheral blood SARS-COV-2- 66

description:
SARS-COV-2- peripheral blood sample
204500250027_R08C01

source_name: SARS-COV-2- 66

value: Male


title: genomic DNA from peripheral blood SARS-COV-2- 64

description:
SARS-COV-2- peripheral blood sample
204500250032_R05C01

source_name: SARS-COV-2- 64

value: Not Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2- 53

description:
SARS-COV-2- peripheral blood sample
204500250027_R01C01

source_name: SARS-COV-2- 53


title: genomic DNA from peripheral blood SARS-COV-2- 17

description:
SARS-COV-2- peripheral blood sample
204500250027_R07C01

source_name: SARS-COV-2- 17


title: genomic DNA from peripheral blood SARS-COV-2- 185

description:
SARS-COV-2- peripheral blood sample
204500250026_R08C01

source_name: SARS-COV-2- 185


title: genomic DNA from peripheral blood SARS-COV-2+ 54

description:
SARS-COV-2+ peripheral blood sample
204500250030_R08C01

source_name: SARS-COV-2+ 54

value: positive


title: genomic DNA from peripheral blood SARS-COV-2- 30

description:
SARS-COV-2- peripheral blood sample
204500250025_R07C01

source_name: SARS-COV-2- 30


title: genomic DNA from peripheral blood SARS-COV-2- 91

description:
SARS-COV-2- peripheral blood sample
204500250026_R07C01

source_name: SARS-COV-2- 91


title: genomic DNA from peripheral blood SARS-COV-2- 79

description:
SARS-COV-2- peripheral blood sample
204500250026_R06C01

source_name: SARS-COV-2- 79


title: genomic DNA from peripheral blood SARS-COV-2- 68

description:
SARS-COV-2- peripheral blood sample
204500250026_R01C01

source_name: SARS-COV-2- 68


title: genomic DNA from peripheral blood SARS-COV-2- 54

description:
SARS-COV-2- peripheral blood sample
204500250026_R03C01

source_name: SARS-COV-2- 54


title: genomic DNA from peripheral blood SARS-COV-2+ 6

description:
SARS-COV-2+ peripheral blood sample
204500250025_R04C01

source_name: SARS-COV-2+ 6


title: genomic DNA from peripheral blood SARS-COV-2- 22

description:
SARS-COV-2- peripheral blood sample
204500250025_R03C01

source_name: SARS-COV-2- 22

value: Asian


title: genomic DNA from peripheral blood SARS-COV-2+ 30

description:
SARS-COV-2+ peripheral blood sample
204500250025_R05C01

source_name: SARS-COV-2+ 30


title: genomic DNA from peripheral blood SARS-COV-2+ 37

description:
SARS-COV-2+ peripheral blood sample
204500250025_R02C01

source_name: SARS-COV-2+ 37

value: Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2- 122

description:
SARS-COV-2- peripheral blood sample
204500250024_R04C01

source_name: SARS-COV-2- 122


title: genomic DNA from peripheral blood SARS-COV-2+ 13

description:
SARS-COV-2+ peripheral blood sample
204500250028_R02C01

source_name: SARS-COV-2+ 13


title: genomic DNA from peripheral blood SARS-COV-2- 86

description:
SARS-COV-2- peripheral blood sample
204500250022_R05C01

source_name: SARS-COV-2- 86

value: Yes

value: ICU


title: genomic DNA from peripheral blood SARS-COV-2+ 88

description:
SARS-COV-2+ peripheral blood sample
204500250022_R07C01

source_name: SARS-COV-2+ 88

value: No Panel

value: Death


title: genomic DNA from peripheral blood SARS-COV-2- 56

description:
SARS-COV-2- peripheral blood sample
204500250022_R04C01

source_name: SARS-COV-2- 56

value: NativeHawaiianorPacificIslander


title: genomic DNA from peripheral blood SARS-COV-2- 61

description:
SARS-COV-2- peripheral blood sample
204500250024_R05C01

source_name: SARS-COV-2- 61

value: Female

value: Other

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2- 28

description:
SARS-COV-2- peripheral blood sample
204500250020_R08C01

source_name: SARS-COV-2- 28


title: genomic DNA from peripheral blood SARS-COV-2- 130

description:
SARS-COV-2- peripheral blood sample
204500250024_R01C01

source_name: SARS-COV-2- 130

value: White


title: genomic DNA from peripheral blood SARS-COV-2+ 12

description:
SARS-COV-2+ peripheral blood sample
204500250020_R07C01

source_name: SARS-COV-2+ 12

value: BlackorAA

value: No


title: genomic DNA from peripheral blood OtherInfection 2

description:
OtherInfection+ peripheral blood sample
204500250020_R06C01

value: other infection


title: genomic DNA from peripheral blood SARS-COV-2- 20

description:
SARS-COV-2- peripheral blood sample
204500250020_R04C01

source_name: SARS-COV-2- 20

value: negative

value: Male

value: Home


title: genomic DNA from peripheral blood SARS-COV-2- 143

description:
SARS-COV-2- peripheral blood sample
204500250022_R03C01

source_name: SARS-COV-2- 143

value: Not Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2- 29

description:
SARS-COV-2- peripheral blood sample
204500250020_R03C01

source_name: SARS-COV-2- 29

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood SARS-COV-2- 2

description:
SARS-COV-2- peripheral blood sample
204500250025_R08C01

source_name: SARS-COV-2- 2


title: genomic DNA from peripheral blood SARS-COV-2+ 18

description:
SARS-COV-2+ peripheral blood sample
204500250020_R05C01

source_name: SARS-COV-2+ 18

value: positive

value: Hispanic or Latino

value: Yes


title: genomic DNA from peripheral blood SARS-COV-2+ 27

description:
SARS-COV-2+ peripheral blood sample
204500250020_R01C01

source_name: SARS-COV-2+ 27

value: ICU


title: genomic DNA from peripheral blood SARS-COV-2- 159

description:
SARS-COV-2- peripheral blood sample
204500250018_R05C01

source_name: SARS-COV-2- 159

value: No Panel


title: genomic DNA from peripheral blood SARS-COV-2- 146

description:
SARS-COV-2- peripheral blood sample
204500250024_R08C01

source_name: SARS-COV-2- 146


title: genomic DNA from peripheral blood SARS-COV-2- 45

description:
SARS-COV-2- peripheral blood sample
204500250023_R04C01

source_name: SARS-COV-2- 45

value: Discharged


title: genomic DNA from peripheral blood SARS-COV-2- 12

description:
SARS-COV-2- peripheral blood sample
204500250025_R01C01

source_name: SARS-COV-2- 12


title: genomic DNA from peripheral blood SARS-COV-2+ 11

description:
SARS-COV-2+ peripheral blood sample
204500250020_R02C01

source_name: SARS-COV-2+ 11

value: Female


title: genomic DNA from peripheral blood SARS-COV-2+ 16

description:
SARS-COV-2+ peripheral blood sample
204500250025_R06C01

source_name: SARS-COV-2+ 16

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2+ 3

description:
SARS-COV-2+ peripheral blood sample
204500250017_R08C01

source_name: SARS-COV-2+ 3

value: Other


title: genomic DNA from peripheral blood SARS-COV-2+ 25

description:
SARS-COV-2+ peripheral blood sample
204500250017_R07C01

source_name: SARS-COV-2+ 25

value: BlackorAA


title: genomic DNA from peripheral blood SARS-COV-2- 32

description:
SARS-COV-2- peripheral blood sample
204500250017_R06C01

source_name: SARS-COV-2- 32

value: White

value: No


title: genomic DNA from peripheral blood SARS-COV-2- 21

description:
SARS-COV-2- peripheral blood sample
204500250017_R02C01

source_name: SARS-COV-2- 21

value: negative


title: genomic DNA from peripheral blood SARS-COV-2- 128

description:
SARS-COV-2- peripheral blood sample
204500250016_R07C01

source_name: SARS-COV-2- 128

value: Male


title: genomic DNA from peripheral blood OtherInfection 5

description:
OtherInfection+ peripheral blood sample
204500250017_R03C01

value: other infection

value: Home


title: genomic DNA from peripheral blood SARS-COV-2- 172

description:
SARS-COV-2- peripheral blood sample
204500250016_R05C01

source_name: SARS-COV-2- 172


title: genomic DNA from peripheral blood SARS-COV-2- 62

description:
SARS-COV-2- peripheral blood sample
204500250015_R05C01

source_name: SARS-COV-2- 62

value: Not Hispanic or Latino

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood SARS-COV-2- 144

description:
SARS-COV-2- peripheral blood sample
204500250015_R07C01

source_name: SARS-COV-2- 144

value: Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2+ 47

description:
SARS-COV-2+ peripheral blood sample
204500250016_R06C01

source_name: SARS-COV-2+ 47

value: positive

value: Yes


title: genomic DNA from peripheral blood SARS-COV-2- 154

description:
SARS-COV-2- peripheral blood sample
204500250015_R08C01

source_name: SARS-COV-2- 154

value: No Panel


title: genomic DNA from peripheral blood SARS-COV-2- 161

description:
SARS-COV-2- peripheral blood sample
204500250015_R06C01

source_name: SARS-COV-2- 161


title: genomic DNA from peripheral blood SARS-COV-2- 55

description:
SARS-COV-2- peripheral blood sample
204500250015_R03C01

source_name: SARS-COV-2- 55


title: genomic DNA from peripheral blood SARS-COV-2+ 20

description:
SARS-COV-2+ peripheral blood sample
204500250014_R07C01

source_name: SARS-COV-2+ 20


title: genomic DNA from peripheral blood SARS-COV-2- 16

description:
SARS-COV-2- peripheral blood sample
204500250014_R05C01

source_name: SARS-COV-2- 16


title: genomic DNA from peripheral blood SARS-COV-2+ 9

description:
SARS-COV-2+ peripheral blood sample
204500250014_R02C01

source_name: SARS-COV-2+ 9

value: Discharged


title: genomic DNA from peripheral blood SARS-COV-2- 33

description:
SARS-COV-2- peripheral blood sample
204500250017_R05C01

source_name: SARS-COV-2- 33

value: Female


title: genomic DNA from peripheral blood SARS-COV-2- 11

description:
SARS-COV-2- peripheral blood sample
204500250014_R03C01

source_name: SARS-COV-2- 11

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2+ 26

description:
SARS-COV-2+ peripheral blood sample
204500250014_R04C01

source_name: SARS-COV-2+ 26

value: Other


title: genomic DNA from peripheral blood SARS-COV-2- 19

description:
SARS-COV-2- peripheral blood sample
204500250014_R01C01

source_name: SARS-COV-2- 19


title: genomic DNA from peripheral blood SARS-COV-2- 36

description:
SARS-COV-2- peripheral blood sample
204500250013_R08C01

source_name: SARS-COV-2- 36


title: genomic DNA from peripheral blood SARS-COV-2+ 8

description:
SARS-COV-2+ peripheral blood sample
204500250017_R04C01

source_name: SARS-COV-2+ 8

value: Asian


title: genomic DNA from peripheral blood SARS-COV-2- 4

description:
SARS-COV-2- peripheral blood sample
204500250013_R07C01

source_name: SARS-COV-2- 4


title: genomic DNA from peripheral blood SARS-COV-2+ 10

description:
SARS-COV-2+ peripheral blood sample
204500250013_R06C01

source_name: SARS-COV-2+ 10

value: White


title: genomic DNA from peripheral blood SARS-COV-2- 9

description:
SARS-COV-2- peripheral blood sample
204500250013_R04C01

source_name: SARS-COV-2- 9

value: No


title: genomic DNA from peripheral blood SARS-COV-2+ 22

description:
SARS-COV-2+ peripheral blood sample
204500250017_R01C01

source_name: SARS-COV-2+ 22


title: genomic DNA from peripheral blood SARS-COV-2+ 31

description:
SARS-COV-2+ peripheral blood sample
204500250013_R05C01

source_name: SARS-COV-2+ 31

value: BlackorAA

value: Death


title: genomic DNA from peripheral blood SARS-COV-2- 5

description:
SARS-COV-2- peripheral blood sample
204500250013_R01C01

source_name: SARS-COV-2- 5

value: negative

value: Male


title: genomic DNA from peripheral blood SARS-COV-2- 13

description:
SARS-COV-2- peripheral blood sample
204500250013_R03C01

source_name: SARS-COV-2- 13

value: Not Hispanic or Latino

value: Home


title: genomic DNA from peripheral blood SARS-COV-2+ 17

description:
SARS-COV-2+ peripheral blood sample
204500250013_R02C01

source_name: SARS-COV-2+ 17


title: genomic DNA from peripheral blood SARS-COV-2+ 77

description:
SARS-COV-2+ peripheral blood sample
204500250015_R02C01

source_name: SARS-COV-2+ 77

value: Hispanic or Latino

value: ICU


title: genomic DNA from peripheral blood SARS-COV-2- 141

description:
SARS-COV-2- peripheral blood sample
204500250015_R01C01

source_name: SARS-COV-2- 141


title: genomic DNA from peripheral blood SARS-COV-2- 292

description:
SARS-COV-2- peripheral blood sample
204500250012_R08C01

source_name: SARS-COV-2- 292

value: Yes


title: genomic DNA from peripheral blood SARS-COV-2+ 159

description:
SARS-COV-2+ peripheral blood sample
204500250012_R06C01

source_name: SARS-COV-2+ 159

value: positive

value: No Panel


title: genomic DNA from peripheral blood SARS-COV-2+ 144

description:
SARS-COV-2+ peripheral blood sample
204500250012_R07C01

source_name: SARS-COV-2+ 144

value: Discharged


title: genomic DNA from peripheral blood SARS-COV-2+ 156

description:
SARS-COV-2+ peripheral blood sample
204500250012_R02C01

source_name: SARS-COV-2+ 156

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2- 288

description:
SARS-COV-2- peripheral blood sample
204500250012_R04C01

source_name: SARS-COV-2- 288


title: genomic DNA from peripheral blood SARS-COV-2- 186

description:
SARS-COV-2- peripheral blood sample
204500250011_R04C01

source_name: SARS-COV-2- 186


title: genomic DNA from peripheral blood SARS-COV-2+ 148

description:
SARS-COV-2+ peripheral blood sample
204500250012_R01C01

source_name: SARS-COV-2+ 148

value: Female

value: Other


title: genomic DNA from peripheral blood SARS-COV-2+ 82

description:
SARS-COV-2+ peripheral blood sample
204500250011_R05C01

source_name: SARS-COV-2+ 82

value: White


title: genomic DNA from peripheral blood SARS-COV-2- 37

description:
SARS-COV-2- peripheral blood sample
204500250007_R04C01

source_name: SARS-COV-2- 37

value: No

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood SARS-COV-2- 174

description:
SARS-COV-2- peripheral blood sample
204500250012_R03C01

source_name: SARS-COV-2- 174

value: BlackorAA


title: genomic DNA from peripheral blood SARS-COV-2+ 42

description:
SARS-COV-2+ peripheral blood sample
204500250005_R05C01

source_name: SARS-COV-2+ 42


title: genomic DNA from peripheral blood SARS-COV-2- 157

description:
SARS-COV-2- peripheral blood sample
204500250009_R08C01

source_name: SARS-COV-2- 157

value: negative


title: genomic DNA from peripheral blood SARS-COV-2- 150

description:
SARS-COV-2- peripheral blood sample
204500250002_R08C01

source_name: SARS-COV-2- 150

value: Male


title: genomic DNA from peripheral blood SARS-COV-2- 125

description:
SARS-COV-2- peripheral blood sample
204500250001_R04C01

source_name: SARS-COV-2- 125

value: Not Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2- 84

description:
SARS-COV-2- peripheral blood sample
204500250004_R01C01

source_name: SARS-COV-2- 84


title: genomic DNA from peripheral blood SARS-COV-2- 290

description:
SARS-COV-2- peripheral blood sample
204491920021_R08C01

source_name: SARS-COV-2- 290

value: Home


title: genomic DNA from peripheral blood SARS-COV-2- 40

description:
SARS-COV-2- peripheral blood sample
204491920021_R07C01

source_name: SARS-COV-2- 40


title: genomic DNA from peripheral blood SARS-COV-2+ 160

description:
SARS-COV-2+ peripheral blood sample
204491920021_R04C01

source_name: SARS-COV-2+ 160

value: Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2- 177

description:
SARS-COV-2- peripheral blood sample
204500250015_R04C01

source_name: SARS-COV-2- 177


title: genomic DNA from peripheral blood SARS-COV-2- 293

description:
SARS-COV-2- peripheral blood sample
204491920018_R06C01

source_name: SARS-COV-2- 293


title: genomic DNA from peripheral blood SARS-COV-2+ 141

description:
SARS-COV-2+ peripheral blood sample
204491920021_R02C01

source_name: SARS-COV-2+ 141


title: genomic DNA from peripheral blood SARS-COV-2+ 149

description:
SARS-COV-2+ peripheral blood sample
204491920018_R08C01

source_name: SARS-COV-2+ 149

value: Death


title: genomic DNA from peripheral blood SARS-COV-2+ 151

description:
SARS-COV-2+ peripheral blood sample
204491920018_R05C01

source_name: SARS-COV-2+ 151


title: genomic DNA from peripheral blood SARS-COV-2+ 143

description:
SARS-COV-2+ peripheral blood sample
204491920021_R03C01

source_name: SARS-COV-2+ 143

value: Yes


title: genomic DNA from peripheral blood SARS-COV-2+ 153

description:
SARS-COV-2+ peripheral blood sample
204491920018_R04C01

source_name: SARS-COV-2+ 153

value: positive


title: genomic DNA from peripheral blood SARS-COV-2- 296

description:
SARS-COV-2- peripheral blood sample
204491920018_R02C01

source_name: SARS-COV-2- 296

value: No Panel


title: genomic DNA from peripheral blood SARS-COV-2+ 162

description:
SARS-COV-2+ peripheral blood sample
204491920018_R03C01

source_name: SARS-COV-2+ 162


title: genomic DNA from peripheral blood SARS-COV-2+ 140

description:
SARS-COV-2+ peripheral blood sample
204491920018_R01C01

source_name: SARS-COV-2+ 140


title: genomic DNA from peripheral blood SARS-COV-2+ 45

description:
SARS-COV-2+ peripheral blood sample
204491920017_R08C01

source_name: SARS-COV-2+ 45

value: ICU


title: genomic DNA from peripheral blood SARS-COV-2+ 161

description:
SARS-COV-2+ peripheral blood sample
204491920017_R05C01

source_name: SARS-COV-2+ 161

value: NativeHawaiianorPacificIslander

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2+ 152

description:
SARS-COV-2+ peripheral blood sample
204491920017_R01C01

source_name: SARS-COV-2+ 152

value: Other

value: Discharged


title: genomic DNA from peripheral blood SARS-COV-2- 59

description:
SARS-COV-2- peripheral blood sample
204491920016_R01C01

source_name: SARS-COV-2- 59

value: White


title: genomic DNA from peripheral blood SARS-COV-2- 287

description:
SARS-COV-2- peripheral blood sample
204491920017_R04C01

source_name: SARS-COV-2- 287

value: No


title: genomic DNA from peripheral blood SARS-COV-2+ 163

description:
SARS-COV-2+ peripheral blood sample
204491920017_R03C01

source_name: SARS-COV-2+ 163


title: genomic DNA from peripheral blood SARS-COV-2- 123

description:
SARS-COV-2- peripheral blood sample
204491920016_R08C01

source_name: SARS-COV-2- 123


title: genomic DNA from peripheral blood SARS-COV-2- 171

description:
SARS-COV-2- peripheral blood sample
204491920016_R03C01

source_name: SARS-COV-2- 171

value: Female


title: genomic DNA from peripheral blood SARS-COV-2+ 150

description:
SARS-COV-2+ peripheral blood sample
204491920010_R03C01

source_name: SARS-COV-2+ 150


title: genomic DNA from peripheral blood SARS-COV-2- 67

description:
SARS-COV-2- peripheral blood sample
204491920017_R07C01

source_name: SARS-COV-2- 67

value: negative


title: genomic DNA from peripheral blood SARS-COV-2- 147

description:
SARS-COV-2- peripheral blood sample
204491920011_R06C01

source_name: SARS-COV-2- 147

value: BlackorAA


title: genomic DNA from peripheral blood SARS-COV-2- 164

description:
SARS-COV-2- peripheral blood sample
204491920012_R06C01

source_name: SARS-COV-2- 164

value: Not Hispanic or Latino


title: genomic DNA from peripheral blood SARS-COV-2+ 52

description:
SARS-COV-2+ peripheral blood sample
204491920011_R03C01

source_name: SARS-COV-2+ 52

value: Nursing home or skilled rehab


title: genomic DNA from peripheral blood SARS-COV-2- 87

description:
SARS-COV-2- peripheral blood sample
204491920007_R05C01

source_name: SARS-COV-2- 87

value: Male

value: Hispanic or Latino

value: Home


title: genomic DNA from peripheral blood SARS-COV-2+ 145

description:
SARS-COV-2+ peripheral blood sample
204491920007_R04C01

source_name: SARS-COV-2+ 145

value: positive


title: genomic DNA from peripheral blood SARS-COV-2+ 44

description:
SARS-COV-2+ peripheral blood sample
204491920007_R02C01

source_name: SARS-COV-2+ 44

value: No Panel


title: genomic DNA from peripheral blood SARS-COV-2+ 51

description:
SARS-COV-2+ peripheral blood sample
204491920006_R02C01

source_name: SARS-COV-2+ 51

value: Yes

value: ICU


title: genomic DNA from peripheral blood SARS-COV-2+ 157

description:
SARS-COV-2+ peripheral blood sample
204491920005_R04C01

source_name: SARS-COV-2+ 157

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2- 294

description:
SARS-COV-2- peripheral blood sample
204491920010_R06C01

source_name: SARS-COV-2- 294


title: genomic DNA from peripheral blood SARS-COV-2+ 164

description:
SARS-COV-2+ peripheral blood sample
204491920010_R07C01

source_name: SARS-COV-2+ 164

value: Other


title: genomic DNA from peripheral blood SARS-COV-2- 124

description:
SARS-COV-2- peripheral blood sample
204491920003_R03C01

source_name: SARS-COV-2- 124

value: Discharged


title: genomic DNA from peripheral blood SARS-COV-2- 286

description:
SARS-COV-2- peripheral blood sample
204491920010_R02C01

source_name: SARS-COV-2- 286

value: White


title: genomic DNA from peripheral blood SARS-COV-2- 77

description:
SARS-COV-2- peripheral blood sample
204491920001_R07C01

source_name: SARS-COV-2- 77

value: No


title: genomic DNA from peripheral blood SARS-COV-2+ 158

description:
SARS-COV-2+ peripheral blood sample
204491920010_R04C01

source_name: SARS-COV-2+ 158


title: genomic DNA from peripheral blood SARS-COV-2+ 154

description:
SARS-COV-2+ peripheral blood sample
204491920010_R01C01

source_name: SARS-COV-2+ 154

value: Female


title: genomic DNA from peripheral blood SARS-COV-2- 291

description:
SARS-COV-2- peripheral blood sample
204491920010_R05C01

source_name: SARS-COV-2- 291

value: negative


title: genomic DNA from peripheral blood SARS-COV-2+ 147

description:
SARS-COV-2+ peripheral blood sample
204491920007_R06C01

source_name: SARS-COV-2+ 147


title: genomic DNA from peripheral blood SARS-COV-2+ 142

description:
SARS-COV-2+ peripheral blood sample
204491920007_R08C01

source_name: SARS-COV-2+ 142


title: genomic DNA from peripheral blood SARS-COV-2- 63

description:
SARS-COV-2- peripheral blood sample
204491920007_R01C01

source_name: SARS-COV-2- 63


title: KMGS69

type: SRA

city: Hamilton

first: Katherine

last: Morrison

address: 1280 Main street west

country: Canada

institute: McMaster

library_source: transcriptomic

data_processing:
Library strategy: 16S rRNA-seq
BaseCalling on the MiSeq uses software called "RTA" v1.18.54.
For demultiplexing and FastQ generation: "bcl2fastq2" v2.20; allow 0 index mismatches for 16S data. After the bcl2 program from the sequencing facility we 1) trim the primers using Cutadapt, 2) error correct using dada2, 3) classify ASVs using SILVA version 132
Genome_build: The data were trimmed of adapters and denoised using dada2
Supplementary_files_format_and_content: .CSV files contain ASV counts.

molecule: total RNA

organism: human feces metagenome

source_name: Stool

extract_protocol:
Purified DNA was used for amplification of the 16S rRNA gene using paired end reads of the V3 region.  Amplification of the bacterial 16S rRNA gene for the germ-free mice microbiota was done for the V3-V4 region. 50 ng of DNA was used as template with 1U of Taq, 1x buffer, 1.5 mM MgCl2, 0.4 mg/mL BSA, 0.2 mM dNTPs, and 5 pmoles each of 341F (CCTACGGGAGGCAGCAG) and 518R (ATTACCGCGGCTGCTGG) Illumina adapted primers, as previously described (doi: 10.1128/AEM.02772-10. Epub 2011 Apr 1).  The reaction was carried out at 94◦C for 5 minutes, 25 cycles of 94◦C for 30 seconds, 50◦C for 30 seconds and 72◦C for 30 seconds, with a final extension of 72◦C for 10 minutes. PCR products were then visualized on a 1.5% agarose gel.  Positive amplicons were normalized using the SequalPrep Normalization Plate kit (Thermo Fisher, Wlatham, Massachusetts, USA).
custom amplicon

treatment_protocol: DNA extraction was carried out as described previously (doi: 10.1038/ismej.2014.250. Epub 2015 Jan 9), with few modifications,  from 0.2g of stool sample that was mechanically lysed with 2.8mm ceramic beads (Mo Bio Laboratories Carlsbad, CA) and 0.1mm glass beads (Mo Bio Laboratories, Carlsbad, CA) for 2 cycles of 3 minutes at 3000rpm with a 45 seconds  delay between cycles in 800μl of 200mM of monobasic NaPO4 (pH=8) and 100μl of guanidinium thiocyanate buffer. Samples were further centrifuged at 13,500g for 5 minutes and processed using the MagMAX-96 DNA Multi-sample kit (Life Technologies, Carlsbad, CA) via the MagMAX Express 96-Deep Well Magnetic Particle Processor (Applied Biosystems, Foster City, CA).

tag: source

value: Human

tag: rna population

value: 16s rRNA

tag: patient diagnosis

value: NAFLD-


title: genomic DNA from peripheral blood SARS-COV-2+ 146

description:
SARS-COV-2+ peripheral blood sample
204491920005_R07C01

source_name: SARS-COV-2+ 146

value: Male

value: Not Hispanic or Latino

value: Death


title: genomic DNA from peripheral blood SARS-COV-2+ 139

description:
SARS-COV-2+ peripheral blood sample
204491920005_R02C01

source_name: SARS-COV-2+ 139

value: positive

value: Hispanic or Latino

value: Home


title: KMGS59

value: NAFLD+


title: genomic DNA from peripheral blood SARS-COV-2- 289

description:
SARS-COV-2- peripheral blood sample
204491920005_R05C01

source_name: SARS-COV-2- 289

value: No Panel

value: Floor Admission


title: genomic DNA from peripheral blood SARS-COV-2- 184

description:
SARS-COV-2- peripheral blood sample
204491920013_R01C01

source_name: SARS-COV-2- 184


title: KMGS56


title: genomic DNA from peripheral blood SARS-COV-2+ 155

description:
SARS-COV-2+ peripheral blood sample
204491920005_R01C01

source_name: SARS-COV-2+ 155

value: Other


title: KMGS51


title: genomic DNA from peripheral blood SARS-COV-2- 89

description:
SARS-COV-2- peripheral blood sample
204491920010_R08C01

source_name: SARS-COV-2- 89

value: White

value: Yes


title: KMGS68


title: KMGS70


title: KMGS67


title: KMGS66


title: KMGS64


title: KMGS62


title: KMGS63


title: KMGS60


title: KMGS61


title: genomic DNA from peripheral blood SARS-COV-2- 295

description:
SARS-COV-2- peripheral blood sample
204491920005_R03C01

source_name: SARS-COV-2- 295

value: BlackorAA

value: No

value: Nursing home or skilled rehab


title: KMGS57

value: Human

value: 16s rRNA


title: KMGS58


title: KMGS45


title: KMGS44


title: KMGS43


title: KMGS47


title: KMGS38


title: KMGS54


title: KMGS35


title: KMGS50


title: KMGS53

value: NAFLD-


title: KMGS48


title: KMGS33


title: KMGS39


title: KMGS40


title: KMGS30


title: KMGS29


title: KMGS28


title: KMGS27


title: KMGS52


title: KMGS37


title: KMGS31


title: KMGS25


title: KMGS23


title: KMGS24


title: KMGS22


title: KMGS20


title: KMGS18


title: KMGS21


title: KMGS19


title: KMGS13


title: KMGS5


title: KMGS14


title: KMGS12


title: KMGS15


title: KMGS11


title: KMGS9


title: KMGS16


title: KMGS7


title: KMGS6


title: KMGS17


title: KMGS10


title: KMGS2


title: KMGS3


title: Arab-col-R5-3

city: Hong Kong

first: Xin

last: DENG

address: 1/F, Block 1, To Yuen Building, City University of Hong Kong, 31 To Yuen Street, Kowloon Tong

department: Department of Biomedical Sciences

country: Hong Kong

institute: City University of Hong Kong

description: processed data file: otu_table_tax.txt

library_source: genomic

data_processing:
RNA-seq reads were mapped to the Pseudomonas sringae 1448A (NC_005773.3) using TopHat (version 2.1.1). Only the uniquely mapped reads were kept for the subsequent analyses. The gene differential expression analysis was performed using Cufflinks（version 2.2.0）.
Raw data were processed using the QIIME (v1.7.0) to get the OUT table.USEARCH software (v8.0.1) were used to generated the OUT table file by aligning the original reads back to the OTUs.
Genome_build: Pseudomonas sringae 1448A NC_005773.3
Supplementary_files_format_and_content: txt files were generated from RNA-seq/root metagenome

organism: root metagenome

source_name: 16S amplicon sequencing of  Arabidopsis plants root microbiome sample wild type (Col-0)

growth_protocol: MM

extract_protocol:
Psph strains were grown, harvested and washed as above, then the bacteria were transferred to MM at 28 ℃ for 6 hours. Total RNA was extracted by using RNeasy Mini Kit (QIAGEN, USA). Genomic DNA was removed by using DNaseI (NEB, USA) for 30 min.
After removing rRNA by using the MICROBExpress kit (Ambion), mRNA was used to generate the cDNA library according to the NEBNext UltraTM II RNA Library Prep Kit protocol (NEB, USA), which was then sequenced using the HiSeq 2000 system (Illumina, USA). All RNA-seq samples have two biological replications.
NEBNext UltraTM II RNA Library Prep Kit protocol (NEB, USA)

treatment_protocol: Grow until mid-log phase in KB and transfer to  minimal medium with the presence of indicated drugs

tag: genotype/variation

value: wild type (Col-0)

tag: growth condition

value: grown in natural soil


title: Arab-col-R5-1

description: processed data file: otu_table_tax.txt


title: Arab-col-R4-3

description: processed data file: otu_table_tax.txt


title: Arab-col-R4-2

description: processed data file: otu_table_tax.txt


title: Arab-col-R4-1

description: processed data file: otu_table_tax.txt


title: KMGS1


title: Arab-col-R3-3

description: processed data file: otu_table_tax.txt


title: Arab-col-R3-1

description: processed data file: otu_table_tax.txt


title: KMGS8


title: Arab-col-R3-2

description: processed data file: otu_table_tax.txt


title: KMGS4


title: Arab-col-R2-2

description: processed data file: otu_table_tax.txt


title: Arab-col-R1-3

description: processed data file: otu_table_tax.txt


title: Arab-col-R2-1

description: processed data file: otu_table_tax.txt


title: Arab-col-R1-2

description: processed data file: otu_table_tax.txt


title: Arab-4G-R4-2

description: processed data file: otu_table_tax.txt

source_name: 16S amplicon sequencing of  Arabidopsis plants root microbiome sample UGT84A3 mutant

value: UGT84A3 mutant


title: Arab-4G-R5-1

description: processed data file: otu_table_tax.txt


title: Arab-4G-R3-3

description: processed data file: otu_table_tax.txt


title: Arab-col-R1-1

description: processed data file: otu_table_tax.txt


title: Arab-col-R5-2

description: processed data file: otu_table_tax.txt


title: Arab-4G-R3-2

description: processed data file: otu_table_tax.txt


title: Arab-4G-R1-3

description: processed data file: otu_table_tax.txt


title: Arab-col-R2-3

description: processed data file: otu_table_tax.txt


title: Arab-4G-R1-2

description: processed data file: otu_table_tax.txt


title: Acesulfame potassium_2

city: Brisbane

first: Jianhua

last: Guo

address: Research Road, Level 4 Gehrmann Building

department: Australian Centre for Water and Environmental Biotechnology

country: Australia

institute: University of Queensland

data_processing:
Base calling through an integrated primary analysis software called RTA (Real Time Analysis. v1.18).
The NGS QC toolkit (version 2.3.3) was used to treat the raw sequence reads to trim the 3’-end residual adaptors and primers, and the ambiguous characters in the reads were removed. Then, the sequence reads consisting of at least 85% bases were progressively trimmed at the 3’-ends until a quality value ≥ 20 were kept. Downstream analyses were performed using the generated clean reads of no shorter than 75 bp.
The clean reads of each sample were aligned to the E. coli reference genome (NC_005966) using SeqAlto (version 0.5). Cufflinks (version 2.2.1) was used to calculate the strand-specific coverage for each gene, and to analyze the differential expression in triplicate bacterial cell cultures. The statistical analyses and visualization were conducted using CummeRbund package in R (http://compbio.mit.edu/cummeRbund/).
Gene expression was calculated as fragments per kilobase of a gene per million mapped reads (FPKM), a normalized value generated from the frequency of detection and the length of a given gene.
Genome_build: NC_005966
Supplementary_files_format_and_content: Excel files include log2(Fold Change) values for each sample

organism: Acinetobacter baylyi ADP1

growth_protocol: Liquid LB culture at 30℃

extract_protocol:
Bacterial cells were then harvested by centrifugation at 8000 × g for 10 min. Total RNA was extracted from the mutants using the QIAGEN miRNeasy Mini Kit (QIAGEN, Germany) manufacturer’s protocol with one extra bead-beating step to completely lyse the bacterial cells.
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: Acinetobacter baylyi ADP1 and pWH1266 plasmid were mixed and cultured in triplicate in 10 mL 0 and 3 mg/L artificial sweeteners (SAC, SUC, ASP, and ACE-K), at 25 °C, without shaking

tag: treatment

value: 3 mg/L Acesulfame potassium


title: Aspartame_3

source_name: Acinetobacter baylyi ADP1 and pWH1266 plasmid

value: 3 mg/L Aspartame


title: Arab-4G-R3-1

description: processed data file: otu_table_tax.txt


title: Arab-4G-R4-1

description: processed data file: otu_table_tax.txt