title: Chip91481_r28_c65_Untreated

description: Chip91481_r28_c65_Untreated_CCTGATGCTAT-AGGCAGAA


title: MM_M1_1_sample 1742

status: Public on Oct 06 2021

type: SRA

city: La Jolla

first: Joseph

middle: R

last: Ecker

state: CA

address: 10010 North Torrey Pines Road

department: Genomic Analysis Laboratory

country: USA

institute: HHMI-Salk-Institute

library_source: genomic

data_processing:
Library strategy: snmC-seq2
Reads trimed with Cutadapt for adapters and low quality bases (Phred score >= 20)
The resulting files are mapped to in-silico bisulfite converted reference genome using Bismark.
The raw BAM file will be filtered using samtools to filter reads by MAPQ > 10 and use Picard to remove PCR duplicates
Tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls will be generated with in-house developing package using the filtered BAM files
Genome_build: ASM275486v1
Supplementary_files_format_and_content: tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls. Columns are: 1. Chromosome, 2. Position, 3. Strand, 4. Cytosin Context, 5. methylated base call, 6. total mapped base call, 7. not used, place holder column

molecule: genomic DNA

organism: Callithrix jacchus

extract_protocol:
M1 regions of human/marmoset brains were dissected.
Library prepared following protocol discribed in Luo, Chongyuan, Angeline Rivkin, Jingtian Zhou, Justin P. Sandoval, Laurie Kurihara, Jacinta Lucero, Rosa Castanon, et al. 2018. “Robust Single-Cell DNA Methylome Profiling with snmC-seq2.” Nature Communications 9 (1): 3824.

tag: tissue

value: brain

tag: brain region

tag: gender

value: M


title: Chip91481_r28_c62_Untreated

city: Rochester

first: Jason

last: Myers

state: NY

address: 601 Elmwood Ave.

institute: University of Rochester

description: Chip91481_r28_c62_Untreated_CCTGCTCCGAA-AGGCAGAA

library_source: transcriptomic

data_processing:
Data Formatting - bcltofastq-2.19.0
Data Cleaning - Trimmomatic-0.36, TRAILING:13 LEADING:13 ILLUMINACLIP:adapters.fasta:2:30:10 SLIDINGWINDOW:4:20 MINLEN:15
Genome Alignment - STAR_2.5.2b, --twopassMode Basic --runMode alignReads --genomeDir ${GENOME} --readFilesIn ${SAMPLE} --outSAMtype BAM SortedByCoordinate --outSAMstrandField intronMotif --outFilterIntronMotifs RemoveNoncanonical
Read Quantification1 - subread-1.5.0p3, featurecounts, -s 2 -t exon -g gene_name
Genome_build: GRCh38 + gencode25
Supplementary_files_format_and_content: tab-delimited text file includes raw count values for each cell

molecule: total RNA

organism: Homo sapiens

source_name: 40 year old female

extract_protocol:
Wafergen iCell8 scRNAseq protocol, no offline RNA isolation performed
Wafergen iCell8 scRNAseq library construction protocol

tag: cell line

tag: cell type

value: Invasive Ductal Carcinoma


title: HS_M1_1_sample 2449

data_processing:
Library strategy: snmC-seq2
Reads trimed with Cutadapt for adapters and low quality bases (Phred score >= 20)
The resulting files are mapped to in-silico bisulfite converted reference genome using Bismark.
The raw BAM file will be filtered using samtools to filter reads by MAPQ > 10 and use Picard to remove PCR duplicates
Tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls will be generated with in-house developing package using the filtered BAM files
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls. Columns are: 1. Chromosome, 2. Position, 3. Strand, 4. Cytosin Context, 5. methylated base call, 6. total mapped base call, 7. not used, place holder column

value: Brain


title: SM-GE8Z5_S370_E1-50

city: Seattle

first: Hongkui

last: Zeng

state: WA

address: 615 Westlake Ave N

institute: Allen Institute for Brain Science

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz

data_processing:
Processing of SSv4 libraries was performed as described previously (Tasic et al., 2018). Briefly, libraries were sequenced on an Illumina HiSeq2500 platform (paired-end with read lengths of 50 bp) to a target read depth of 0.5M reads per cell (range 100,275-12,329,698, median 1,003,867). The Illumina sequencing reads were aligned to GRCm38.p3 (mm10) using a RefSeq annotation gff file retrieved from NCBI on 18 January 2016
Sequence alignment was performed using STAR v2.5.3. (Dobin et al., 2013) in the two-pass mode. PCR duplicates were masked and removed using STAR option ‘bamRemoveDuplicates’. Only uniquely aligned reads were used for gene quantification. Gene counts were computed using the R GenomicAlignments package (Lawrence et al., 2013) and summarizeOverlaps function in ‘IntersectionNotEmpty’ mode for exonic and intronic regions separately. For the SSv4 dataset, we only used exonic regions for gene quantification. Cells that met any one of the following criteria were removed: < 100,000 total reads, < 1,000 detected genes (with CPM > 0), < 75% of reads aligned to genome, or CG dinucleotide odds ratio > 0.5. Doublets were removed by first classifying cells into broad classes of excitatory, inhibitory, and non-neuronal based on known markers. Reads that did not map to the genome were then aligned to synthetic constructs (i.e. ERCC) sequences and the E. coli genome (version ASM584v2) and were used as a QC metric.
Genome_build: mm10
Supplementary_files_format_and_content: cpm.csv.gz
Supplementary_files_format_and_content: exon_counts.csv.gz
Supplementary_files_format_and_content: intron_counts.csv.gz

molecule: polyA RNA

organism: Mus musculus

source_name: retroseq cells mapped to Car3 subclass

growth_protocol: All procedures were carried out in accordance with Institutional Animal Care and Use Committee protocols 1508, 1510, and 1511 at the Allen Institute for Brain Science. Animals were provided food and water ad libitum and were maintained on a regular 14/10-h day/night cycle at no more than five adult animals per cage. Animals were maintained on the C57BL/6J background. Experimental animals were heterozygous for the recombinase transgenes and the reporter transgenes. Standard tamoxifen treatment for CreER lines included a single dose of tamoxifen (40 μl of 50 mg ml−1) dissolved in corn oil and administered via oral gavage at postnatal day (P)10–14. Cux2-CreERT2;Ai140 mice received tamoxifen treatment at P35 ± 5 for five consecutive days. We excluded any animals with anophthalmia or microphthalmia.

extract_protocol:
We isolated single cells as previously described (Hempel et al., 2007; Sugino et al., 2006; Tasic et al., 2016) with modifications. We mostly employed layer-enriching dissections, with focus on a single layer. Broader dissections (no layer enrichment or multiple layers combined) were employed for lines which label small numbers of cells, in order to facilitate isolation of sufficient number of cells. We updated our ACSF formulation to consist of CaCl2 (0.5 mM), glucose (25 mM), HCl (96 mM), HEPES (20 mM), MgSO4 (10 mM), NaH2PO4 (1.25 mM), myo-inositol (3 mM), N-acetylcysteine (12 mM), NMDG (96 mM), KCl (2.5 mM), NaHCO3 (25 mM), sodium L-ascorbate (5 mM), sodium pyruvate (3 mM), taurine (0.01 mM), thiourea (2 mM), and bubbled with carbogen gas (95% O2 and 5% CO2). For samples collected after 12/16/2016, the ACSF formulation also included trehalose (13.2 mM). Mice were anesthetized with isoflurane and perfused with cold carbogen-bubbled ACSF. The brain was dissected, submerged in ACSF, embedded in 2% agarose, and sliced into 250-µm coronal sections on a compresstome (Precisionary). Enzymatic digestion, trituration into single cell suspension, and fluorescence-activated cell sorting (FACS) of single cells were carried out as previously described (Tasic et al., 2016). Cells were sorted into 8-well strips containing lysis buffer from SMART-Seq v4 kit with RNase inhibitor (0.17 U/µl), immediately frozen on dry ice, and stored at -80°C.
We used the SMART-Seq v4 Ultra Low Input RNA Kit for Sequencing (Takara Cat#634894) to reverse transcribe poly(A) RNA and amplify cDNA according to the manufacturer’s instructions. We performed reverse transcription and cDNA amplification for 18 PCR cycles in 8-well strips, in sets of 12-24 strips at a time. At least 1 control strip was used per amplification set, which contained 4 wells without cells and 4 wells with 10 pg control RNA. Control RNA was either Mouse Whole Brain Total RNA (Zyagen, MR-201) or control RNA provided in the SMART-Seq v4 kit. All samples proceeded through NexteraXT DNA Library Preparation (Illumina FC-131-1096) using NexteraXT Index Kit V2 Set A (FC-131-2001). NexteraXT DNA Library prep was performed according to manufactorer’s instructions except that the volumes of all reagents including cDNA input were decreased to 0.4× or 0.5× by volume. Details are available in Documentation on the Allen Institute data portal at: http://celltypes.brain-map.org/.

treatment_protocol: For retrogradely-labeled samples, we injected AAV2-retro-EF1a-Cre (Tervo et al., 2016), rabies virus RV-dGdL-Cre (Chatterjee et al., 2018), or CAV-Cre (Hnasko et al., 2006) into brains of Ai14 or RCL-Sun1sfGFP mice, RV-dL-FlpO into Ai65F mice, AAV2-retro-EF1a-dTomato into Cux2-CreERT2;Ai140 mice, Gnb4-IRES2-CreERT2;Ai140 mice or Gnb4-IRES2-CreERT2;Ai148 mice, as previously described (Tasic et al., 2016). RFP+ or GFP+ single cells were isolated from various cortical regions, depending on the injection area.

tag: age

value: 103 days

tag: region

value: CTXsp

tag: roi

value: RFP-positive (GFP unknown)

value: left

value: ACA

tag: batch

value: Car3 6


title: Chip91481_r28_c57_Treated

description: Chip91481_r28_c57_Treated_CGGAGTAACTA-AGGCAGAA


title: SM-GE8Z5_S284_E1-50

value: Car3 7


title: HS_M1_1_sample 2452


title: MM_M1_1_sample 1740


title: HS_M1_1_sample 2448


title: HS_M1_1_sample 2447


title: MM_M1_1_sample 1743


title: Chip91481_r28_c53_Treated

description: Chip91481_r28_c53_Treated_CGGATGGTACC-AGGCAGAA


title: MM_M1_1_sample 1741


title: HS_M1_1_sample 2446


title: MM_M1_1_sample 1739


title: MM_M1_1_sample 1738


title: SM-GE8Z5_S282_E1-50


title: HS_M1_1_sample 2451


title: SM-GE8Z5_S286_E1-50


title: SM-GE8Z5_S281_E1-50


title: Chip91481_r28_c40_Untreated

description: Chip91481_r28_c40_Untreated_CGACTTAATAG-AGGCAGAA


title: HS_M1_1_sample 2444


title: SM-GE8Z5_S280_E1-50


title: Chip91481_r28_c51_Treated

description: Chip91481_r28_c51_Treated_CGGAGTACGAC-AGGCAGAA


title: Chip91481_r28_c54_Treated

description: Chip91481_r28_c54_Treated_CGGATTGCTGA-AGGCAGAA


title: MM_M1_1_sample 1736


title: SM-GE8Z5_S283_E1-50


title: SM-GE8Z5_S278_E1-50

value: Car3 8


title: SM-GE8Z5_S276_E1-50


title: SM-GE8Z5_S275_E1-50


title: HS_M1_1_sample 2440


title: HS_M1_1_sample 2443


title: Chip91481_r28_c19_Untreated

description: Chip91481_r28_c19_Untreated_CCTGGAAGTTA-AGGCAGAA


title: HS_M1_1_sample 2450


title: HS_M1_1_sample 2445


title: SM-GE8Z5_S273_E1-50

value: right


title: SM-GE8Z5_S279_E1-50


title: Chip91481_r28_c35_Treated

description: Chip91481_r28_c35_Treated_CGTATGCGAAT-AGGCAGAA


title: MM_M1_1_sample 1735


title: MM_M1_1_sample 1731


title: MM_M1_1_sample 1732


title: MM_M1_1_sample 1734


title: Chip91481_r28_c13_Untreated

description: Chip91481_r28_c13_Untreated_CCTGGAACCGC-AGGCAGAA


title: HS_M1_1_sample 2441


title: Chip91481_r28_c11_Treated

description: Chip91481_r28_c11_Treated_CGGCAGTTGCG-AGGCAGAA


title: MM_M1_1_sample 1733


title: HS_M1_1_sample 2442


title: SM-GE8Z5_S274_E1-50


title: MM_M1_1_sample 1730


title: MM_M1_1_sample 1737


title: Chip91481_r28_c26_Treated

description: Chip91481_r28_c26_Treated_CGTCCGGTTGC-AGGCAGAA


title: HS_M1_1_sample 2438


title: HS_M1_1_sample 2437


title: SM-GE8Z4_S382_E1-50


title: HS_M1_1_sample 2439


title: SM-GE8Z4_S384_E1-50


title: MM_M1_1_sample 1727


title: MM_M1_1_sample 1728


title: MM_M1_1_sample 1729


title: MM_M1_1_sample 1725


title: SM-GE8Z4_S381_E1-50


title: HS_M1_1_sample 2436


title: SM-GE8Z4_S379_E1-50


title: HS_M1_1_sample 2434


title: Chip91481_r28_c1_Treated

description: Chip91481_r28_c1_Treated_CGGCGCGTATT-AGGCAGAA


title: Chip91481_r27_c40_Untreated

description: Chip91481_r27_c40_Untreated_CCTCTATAGAT-AGGCAGAA


title: Chip91481_r27_c69_Untreated

description: Chip91481_r27_c69_Untreated_CGAAGTCTAAG-AGGCAGAA


title: SM-GE8Z4_S383_E1-50


title: Chip91481_r27_c61_Untreated

description: Chip91481_r27_c61_Untreated_CGACGTCCGTT-AGGCAGAA


title: MM_M1_1_sample 1723


title: Chip91481_r27_c57_Treated

description: Chip91481_r27_c57_Treated_CGGTTATAGCA-AGGCAGAA


title: MM_M1_1_sample 1726


title: Chip91481_r28_c12_Untreated

description: Chip91481_r28_c12_Untreated_CCTGCCTCTTG-AGGCAGAA


title: Chip91481_r27_c32_Treated

description: Chip91481_r27_c32_Treated_CGGAGGCTTGG-AGGCAGAA


title: SM-GE8Z4_S376_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: MM_M1_1_sample 1722


title: SM-GE8Z4_S380_E1-50


title: HS_M1_1_sample 2435


title: Chip91481_r27_c34_Treated

description: Chip91481_r27_c34_Treated_CGCTCCTAATA-AGGCAGAA


title: Chip91481_r27_c35_Treated

description: Chip91481_r27_c35_Treated_CGCTTCTGCTC-AGGCAGAA


title: HS_M1_1_sample 2432


title: HS_M1_1_sample 2429


title: SM-GE8Z4_S378_E1-50


title: HS_M1_1_sample 2430


title: SM-GE8Z4_S377_E1-50


title: HS_M1_1_sample 2433


title: HS_M1_1_sample 2427


title: HS_M1_1_sample 2431


title: Chip91481_r27_c24_Treated

description: Chip91481_r27_c24_Treated_CGGAACGAGTA-AGGCAGAA


title: Chip91481_r27_c26_Treated

description: Chip91481_r27_c26_Treated_CGGAGGTCGTA-AGGCAGAA


title: MM_M1_1_sample 1721


title: Chip91481_r27_c15_Untreated

description: Chip91481_r27_c15_Untreated_CGACCATCGAA-AGGCAGAA


title: SM-GE8Z4_S375_E1-50


title: MM_M1_1_sample 1724


title: SM-GE8Z4_S371_E1-50


title: SM-GE8Z4_S374_E1-50


title: HS_M1_1_sample 2425


title: HS_M1_1_sample 2428


title: SM-GE8Z4_S370_E1-50


title: SM-GE8Z4_S373_E1-50


title: Chip91481_r27_c25_Treated

description: Chip91481_r27_c25_Treated_CGGAGGATTAT-AGGCAGAA


title: HS_M1_1_sample 2424


title: HS_M1_1_sample 2426


title: HS_M1_1_sample 2423


title: MM_M1_1_sample 1718


title: MM_M1_1_sample 1717


title: MM_M1_1_sample 1720


title: MM_M1_1_sample 1716


title: MM_M1_1_sample 1719


title: Chip91481_r27_c31_Treated

description: Chip91481_r27_c31_Treated_CGGAGGCTGCC-AGGCAGAA


title: SM-GE8Z4_S368_E1-50


title: HS_M1_1_sample 2422


title: SM-GE8Z4_S372_E1-50


title: MM_M1_1_sample 1714


title: MM_M1_1_sample 1715


title: Chip91481_r27_c14_Untreated

description: Chip91481_r27_c14_Untreated_CGACTCTCGAC-AGGCAGAA


title: HS_M1_1_sample 2421


title: SM-GE8Z4_S366_E1-50


title: SM-GE8Z4_S365_E1-50


title: Chip91481_r26_c46_Untreated

description: Chip91481_r26_c46_Untreated_CCATTGCATTG-AGGCAGAA


title: SM-GE8Z4_S367_E1-50


title: Chip91481_r26_c8_Treated

description: Chip91481_r26_c8_Treated_CGGAGATGGAC-AGGCAGAA


title: Chip91481_r26_c56_Treated

description: Chip91481_r26_c56_Treated_CCGTAACTATT-AGGCAGAA


title: HS_M1_1_sample 2420


title: MM_M1_1_sample 1710


title: SM-GE8Z4_S362_E1-50


title: HS_M1_1_sample 2418


title: HS_M1_1_sample 2417


title: HS_M1_1_sample 2419


title: MM_M1_1_sample 1711


title: Chip91481_r26_c6_Treated

description: Chip91481_r26_c6_Treated_CGCTTAGGCCT-AGGCAGAA


title: Chip91481_r26_c40_Untreated

description: Chip91481_r26_c40_Untreated_CCATTGATTAA-AGGCAGAA


title: SM-GE8Z4_S364_E1-50


title: SM-GE8Z4_S363_E1-50


title: MM_M1_1_sample 1708


title: MM_M1_1_sample 1709


title: Chip91481_r26_c23_Untreated

description: Chip91481_r26_c23_Untreated_CCTCTCAGCTG-AGGCAGAA


title: Chip91481_r26_c68_Untreated

description: Chip91481_r26_c68_Untreated_CCATAATATCG-AGGCAGAA


title: SM-GE8Z4_S361_E1-50


title: Chip91481_r26_c43_Untreated

description: Chip91481_r26_c43_Untreated_CCGAATCCGGC-AGGCAGAA


title: Chip91481_r26_c38_Untreated

description: Chip91481_r26_c38_Untreated_CCGACCTACCT-AGGCAGAA


title: HS_M1_1_sample 2415


title: HS_M1_1_sample 2416


title: SM-GE8Z4_S273_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: MM_M1_1_sample 1712


title: HS_M1_1_sample 2414


title: MM_M1_1_sample 1707


title: Chip91481_r26_c21_Untreated

description: Chip91481_r26_c21_Untreated_CCTCGTCTAGA-AGGCAGAA


title: SM-GE8Z3_S365_E1-50

value: AI


title: Chip91481_r26_c19_Untreated

description: Chip91481_r26_c19_Untreated_CCTCTCTCATT-AGGCAGAA


title: MM_M1_1_sample 1705


title: SM-D9E4J_S69_E1-50

value: F

value: 58 days

value: VISp

value: RFP-positive

value: Car3 5


title: Chip91481_r26_c13_Untreated

description: Chip91481_r26_c13_Untreated_CCTCTCTACTA-AGGCAGAA

value: Invasive Ductal Carcinoma


title: SM-D9CZF_S71_E1-50

value: M

value: 54 days

value: CLA


title: MM_M1_1_sample 1703

value: brain


title: MM_M1_1_sample 1704


title: HS_M1_1_sample 2412

value: Brain


title: SM-D9CZF_S54_E1-50

value: left


title: Chip91481_r26_c12_Untreated

description: Chip91481_r26_c12_Untreated_CCTCTCAGTAA-AGGCAGAA


title: MM_M1_1_sample 1706


title: HS_M1_1_sample 2411


title: HS_M1_1_sample 2413


title: SM-D9CZF_S02_E1-50

value: VISpm

value: RV-dGdL-Cre

value: Car3 1


title: MM_M1_1_sample 1701


title: MM_M1_1_sample 1702


title: MM_M1_1_sample 1713


title: SM-D9CZM_S81_E1-50


title: Chip91481_r25_c5_Treated

description: Chip91481_r25_c5_Treated_CCTCCTAGGTA-AGGCAGAA


title: HS_M1_1_sample 2409


title: MM_M1_1_sample 1700


title: Chip91481_r25_c34_Treated

description: Chip91481_r25_c34_Treated_CCGCTTGCGCT-AGGCAGAA


title: Chip91481_r25_c51_Treated

description: Chip91481_r25_c51_Treated_CCTCAGAACCG-AGGCAGAA


title: SM-D9CZ2_S95_E1-50

value: SCs


title: SM-D9CZ6_S25_E1-50


title: MM_M1_1_sample 1699


title: HS_M1_1_sample 2407


title: MM_M1_1_sample 1698


title: HS_M1_1_sample 2406


title: Chip91481_r25_c31_Treated

description: Chip91481_r25_c31_Treated_CCGGTCTACGA-AGGCAGAA


title: HS_M1_1_sample 2410


title: LS-15933_S69_E1-50

value: 53 days

value: RSP


title: Chip91481_r25_c1_Treated

description: Chip91481_r25_c1_Treated_CCTCGCATATG-AGGCAGAA


title: LS-15921_S81_E1-50

value: AUDd


title: SM-J39SM_S095_E1-50

source_name: retroseq cells mapped to L2/3,L4,L5 IT subclass

value: 62 days

value: MOp


title: Chip91481_r24_c64_Untreated

description: Chip91481_r24_c64_Untreated_CCAGCGCAGTA-AGGCAGAA


title: MM_M1_1_sample 1694


title: Chip91481_r24_c7_Treated

description: Chip91481_r24_c7_Treated_CCGCTCGCCTA-AGGCAGAA


title: HS_M1_1_sample 2401


title: Chip91481_r25_c13_Untreated

description: Chip91481_r25_c13_Untreated_CCGAACTCTAC-AGGCAGAA


title: SM-J39SM_S094_E1-50

value: RFP-positive


title: HS_M1_1_sample 2405


title: MM_M1_1_sample 1692


title: LS-15933_S59_E1-50

value: VISp

value: Car3 5


title: HS_M1_1_sample 2403

value: M


title: HS_M1_1_sample 2404


title: MM_M1_1_sample 1691


title: HS_M1_1_sample 2398


title: Chip91481_r25_c32_Treated

description: Chip91481_r25_c32_Treated_CCGGTTCTGCC-AGGCAGAA

value: Invasive Ductal Carcinoma


title: Chip91481_r24_c52_Treated

description: Chip91481_r24_c52_Treated_CCGCCGATCTG-AGGCAGAA


title: MM_M1_1_sample 1697

value: brain


title: MM_M1_1_sample 1693


title: MM_M1_1_sample 1696


title: Chip91481_r24_c66_Untreated

description: Chip91481_r24_c66_Untreated_CCAGCTCTAAG-AGGCAGAA


title: MM_M1_1_sample 1695


title: MM_M1_1_sample 1690


title: HS_M1_1_sample 2408

value: Brain


title: SM-J39SM_S096_E1-50


title: HS_M1_1_sample 2402


title: Chip91481_r24_c44_Untreated

description: Chip91481_r24_c44_Untreated_CCATTAGAGCC-AGGCAGAA


title: HS_M1_1_sample 2399


title: MM_M1_1_sample 1689


title: SM-J39SM_S092_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: HS_M1_1_sample 2396


title: SM-J39SM_S089_E1-50


title: MM_M1_1_sample 1688


title: SM-J39SM_S088_E1-50


title: HS_M1_1_sample 2400


title: Chip91481_r24_c40_Untreated

description: Chip91481_r24_c40_Untreated_CCATCTTGATG-AGGCAGAA


title: SM-J39SM_S093_E1-50


title: Chip91481_r24_c57_Treated

description: Chip91481_r24_c57_Treated_CCGCCATGCCA-AGGCAGAA


title: Chip91481_r24_c26_Treated

description: Chip91481_r24_c26_Treated_CCTCCAACCGA-AGGCAGAA


title: SM-J39SM_S085_E1-50


title: Chip91481_r24_c21_Untreated

description: Chip91481_r24_c21_Untreated_CCAGCGCGGAC-AGGCAGAA


title: Chip91481_r24_c13_Untreated

description: Chip91481_r24_c13_Untreated_CCAGGCCGCAA-AGGCAGAA


title: Chip91481_r24_c41_Untreated

description: Chip91481_r24_c41_Untreated_CCATGCGCGAC-AGGCAGAA


title: MM_M1_1_sample 1681


title: HS_M1_1_sample 2397


title: HS_M1_1_sample 2390


title: Chip91481_r23_c70_Untreated

description: Chip91481_r23_c70_Untreated_CCATCCAGGTT-AGGCAGAA


title: SM-J39SM_S090_E1-50


title: MM_M1_1_sample 1686


title: MM_M1_1_sample 1687


title: Chip91481_r24_c5_Treated

description: Chip91481_r24_c5_Treated_CCGCGATTGAT-AGGCAGAA


title: HS_M1_1_sample 2394


title: MM_M1_1_sample 1682


title: MM_M1_1_sample 1683


title: SM-J39SM_S091_E1-50


title: Chip91481_r24_c34_Treated

description: Chip91481_r24_c34_Treated_CCTCAAGCTAG-AGGCAGAA


title: SM-J39SM_S087_E1-50


title: MM_M1_1_sample 1684


title: HS_M1_1_sample 2392


title: HS_M1_1_sample 2389


title: HS_M1_1_sample 2387


title: SM-J39SM_S084_E1-50


title: SM-J39SM_S081_E1-50


title: MM_M1_1_sample 1678


title: Chip91481_r23_c52_Treated

description: Chip91481_r23_c52_Treated_CCTACGAGGCA-AGGCAGAA


title: HS_M1_1_sample 2393


title: MM_M1_1_sample 1677


title: HS_M1_1_sample 2385


title: HS_M1_1_sample 2386


title: SM-J39SL_S765_E1-50


title: HS_M1_1_sample 2384


title: SM-J39SL_S764_E1-50


title: HS_M1_1_sample 2388


title: SM-J39SL_S766_E1-50


title: HS_M1_1_sample 2395


title: HS_M1_1_sample 2382


title: SM-J39SM_S086_E1-50


title: MM_M1_1_sample 1679


title: MM_M1_1_sample 1673


title: Chip91481_r23_c30_Treated

description: Chip91481_r23_c30_Treated_CCGCATTAATT-AGGCAGAA


title: Chip91481_r23_c6_Treated

description: Chip91481_r23_c6_Treated_CCTAGGACCAA-AGGCAGAA


title: Chip91481_r23_c40_Untreated

description: Chip91481_r23_c40_Untreated_CCAGCAACGAG-AGGCAGAA


title: SM-J39SL_S761_E1-50


title: SM-J39SL_S768_E1-50


title: MM_M1_1_sample 1680


title: SM-J39SL_S767_E1-50


title: MM_M1_1_sample 1671


title: MM_M1_1_sample 1674


title: SM-J39SL_S759_E1-50


title: SM-J39SL_S762_E1-50


title: SM-J39SM_S082_E1-50


title: HS_M1_1_sample 2383


title: SM-J39SL_S758_E1-50


title: HS_M1_1_sample 2391


title: Chip91481_r23_c58_Treated

description: Chip91481_r23_c58_Treated_CCTACGCGATA-AGGCAGAA


title: HS_M1_1_sample 2378


title: MM_M1_1_sample 1675


title: HS_M1_1_sample 2381


title: HS_M1_1_sample 2377


title: MM_M1_1_sample 1672


title: Chip91481_r23_c46_Untreated

description: Chip91481_r23_c46_Untreated_CCAGCAAGGTC-AGGCAGAA


title: MM_M1_1_sample 1676


title: SM-J39SL_S763_E1-50


title: Chip91481_r23_c32_Treated

description: Chip91481_r23_c32_Treated_CCGCCATAATG-AGGCAGAA


title: SM-J39SL_S757_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: Chip91481_r23_c37_Untreated

description: Chip91481_r23_c37_Untreated_CCAGCCTCCGG-AGGCAGAA


title: SM-J39SL_S760_E1-50


title: MM_M1_1_sample 1668


title: MM_M1_1_sample 1670


title: HS_M1_1_sample 2376


title: MM_M1_1_sample 1667


title: MM_M1_1_sample 1666


title: MM_M1_1_sample 1665


title: Chip91481_r22_c67_Untreated

description: Chip91481_r22_c67_Untreated_CCAGACTACTT-AGGCAGAA


title: HS_M1_1_sample 2375


title: Chip91481_r23_c28_Treated

description: Chip91481_r23_c28_Treated_CCGCAGCATAC-AGGCAGAA


title: HS_M1_1_sample 2373


title: Chip91481_r22_c59_Treated

description: Chip91481_r22_c59_Treated_CCGAGCGAGCG-AGGCAGAA


title: HS_M1_1_sample 2379


title: SM-J39SL_S754_E1-50


title: HS_M1_1_sample 2380


title: Chip91481_r22_c53_Treated

description: Chip91481_r22_c53_Treated_CCGAGAGTCCT-AGGCAGAA


title: MM_M1_1_sample 1669


title: HS_M1_1_sample 2371


title: Chip91481_r23_c13_Untreated

description: Chip91481_r23_c13_Untreated_CCATCTCGCTT-AGGCAGAA


title: Chip91481_r23_c3_Treated

description: Chip91481_r23_c3_Treated_CCTACGGCCAG-AGGCAGAA


title: Chip91481_r23_c18_Untreated

description: Chip91481_r23_c18_Untreated_CCATCGTTAAC-AGGCAGAA


title: SM-J39SL_S755_E1-50


title: SM-J39SU_S094_E1-50


title: HS_M1_1_sample 2374


title: Chip91481_r22_c70_Untreated

description: Chip91481_r22_c70_Untreated_CCAATTGCTAG-AGGCAGAA


title: Chip91481_r23_c19_Untreated

description: Chip91481_r23_c19_Untreated_CCATCTGAGAT-AGGCAGAA


title: SM-J39SL_S756_E1-50


title: SM-J39SU_S093_E1-50


title: HS_M1_1_sample 2369


title: MM_M1_1_sample 1663


title: Chip91481_r22_c58_Treated

description: Chip91481_r22_c58_Treated_CCGACTACGTT-AGGCAGAA


title: MM_M1_1_sample 1660


title: Chip91481_r22_c37_Untreated

description: Chip91481_r22_c37_Untreated_CCATATTACTC-AGGCAGAA


title: MM_M1_1_sample 1662


title: HS_M1_1_sample 2370


title: Chip91481_r22_c30_Treated

description: Chip91481_r22_c30_Treated_CCGTTCGAAGC-AGGCAGAA


title: SM-J39SU_S096_E1-50


title: HS_M1_1_sample 2372


title: MM_M1_1_sample 1659


title: MM_M1_1_sample 1664


title: HS_M1_1_sample 2367


title: SM-J39SL_S753_E1-50


title: SM-J39SU_S091_E1-50


title: HS_M1_1_sample 2368


title: SM-J39SU_S095_E1-50


title: MM_M1_1_sample 1661


title: SM-J39SU_S090_E1-50


title: HS_M1_1_sample 2365


title: Chip91481_r22_c19_Untreated

description: Chip91481_r22_c19_Untreated_CCAGCCGCGCA-AGGCAGAA


title: HS_M1_1_sample 2364


title: MM_M1_1_sample 1655


title: Chip91481_r22_c13_Untreated

description: Chip91481_r22_c13_Untreated_CCAGCCAGTAC-AGGCAGAA


title: MM_M1_1_sample 1657


title: SM-J39SU_S092_E1-50


title: SM-J39SU_S087_E1-50


title: MM_M1_1_sample 1654


title: Chip91481_r22_c2_Neg

description: Chip91481_r22_c2_Neg_Ctrl_CCGCCAAGAAT-AGGCAGAA


title: Chip91481_r22_c40_Untreated

description: Chip91481_r22_c40_Untreated_CCATACGTCAG-AGGCAGAA


title: SM-J39SU_S089_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: MM_M1_1_sample 1653


title: MM_M1_1_sample 1658


title: HS_M1_1_sample 2366


title: HS_M1_1_sample 2361


title: Chip91481_r22_c24_Treated

description: Chip91481_r22_c24_Treated_CCGTTCCATGG-AGGCAGAA


title: Chip91481_r21_c70_Untreated

description: Chip91481_r21_c70_Untreated_CAACCAGATCG-AGGCAGAA


title: SM-J39SU_S085_E1-50


title: HS_M1_1_sample 2362


title: SM-J39SU_S086_E1-50


title: HS_M1_1_sample 2363


title: Chip91481_r22_c25_Treated

description: Chip91481_r22_c25_Treated_CCTAAGTCCTC-AGGCAGAA


title: Chip91481_r21_c66_Untreated

description: Chip91481_r21_c66_Untreated_CAACCATCAAC-AGGCAGAA


title: Chip91481_r21_c63_Untreated

description: Chip91481_r21_c63_Untreated_CAACCAATGAG-AGGCAGAA


title: MM_M1_1_sample 1656


title: SM-J39SU_S088_E1-50


title: SM-J39SU_S084_E1-50


title: SM-J39SU_S083_E1-50


title: HS_M1_1_sample 2359


title: Chip91481_r21_c55_Treated

description: Chip91481_r21_c55_Treated_CCAATGCTATA-AGGCAGAA


title: SM-J39SU_S082_E1-50


title: MM_M1_1_sample 1651


title: SM-J39SU_S081_E1-50


title: HS_M1_1_sample 2360


title: MM_M1_1_sample 1648


title: MM_M1_1_sample 1650


title: HS_M1_1_sample 2355


title: HS_M1_1_sample 2358


title: SM-J39VT_S480_E1-50

value: F

value: 58 days

value: SSp

value: left

value: SSs

value: RV-dL-FlpO


title: Chip91481_r21_c44_Untreated

description: Chip91481_r21_c44_Untreated_CCAGACCATAT-AGGCAGAA


title: SM-J39VT_S479_E1-50


title: Chip91481_r21_c62_Untreated

description: Chip91481_r21_c62_Untreated_CAACCGAGTCT-AGGCAGAA


title: MM_M1_1_sample 1649


title: Chip91481_r21_c54_Treated

description: Chip91481_r21_c54_Treated_CCAATCGGCTG-AGGCAGAA


title: HS_M1_1_sample 2356


title: MM_M1_1_sample 1646


title: Chip91481_r21_c41_Untreated

description: Chip91481_r21_c41_Untreated_CCAGAACCATT-AGGCAGAA


title: SM-J39VT_S475_E1-50


title: MM_M1_1_sample 1652


title: HS_M1_1_sample 2354


title: Chip91481_r21_c35_Treated

description: Chip91481_r21_c35_Treated_CCGACTTCTAT-AGGCAGAA


title: HS_M1_1_sample 2357


title: Chip91481_r21_c45_Untreated

description: Chip91481_r21_c45_Untreated_CCAATGGACTC-AGGCAGAA


title: MM_M1_1_sample 1645


title: SM-J39VT_S469_E1-50


title: MM_M1_1_sample 1647


title: MM_M1_1_sample 1643


title: HS_M1_1_sample 2352


title: Chip91481_r21_c34_Treated

description: Chip91481_r21_c34_Treated_CCGACGCTCAA-AGGCAGAA


title: HS_M1_1_sample 2353


title: Chip91481_r21_c12_Untreated

description: Chip91481_r21_c12_Untreated_CCATAGCGTAG-AGGCAGAA


title: HS_M1_1_sample 2351


title: Chip91481_r20_c71_Untreated

description: Chip91481_r20_c71_Untreated_ATCTTGGACCT-AGGCAGAA


title: MM_M1_1_sample 1641


title: HS_M1_1_sample 2348


title: Chip91481_r21_c10_Treated

description: Chip91481_r21_c10_Treated_CCGTATTCGGT-AGGCAGAA


title: HS_M1_1_sample 2347


title: SM-J39VT_S474_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: MM_M1_1_sample 1644


title: Chip91481_r21_c20_Untreated

description: Chip91481_r21_c20_Untreated_CCATATGAAGA-AGGCAGAA


title: MM_M1_1_sample 1639


title: SM-J39VT_S467_E1-50


title: MM_M1_1_sample 1640


title: HS_M1_1_sample 2349


title: HS_M1_1_sample 2350


title: MM_M1_1_sample 1638


title: MM_M1_1_sample 1642


title: Chip91481_r20_c66_Untreated

description: Chip91481_r20_c66_Untreated_ATGAAGCTGAG-AGGCAGAA


title: Chip91481_r20_c9_Treated

description: Chip91481_r20_c9_Treated_CATGGTTGCTC-AGGCAGAA


title: SM-J39VT_S445_E1-50


title: SM-J39VT_S468_E1-50


title: SM-J39VT_S462_E1-50


title: SM-J39VT_S461_E1-50


title: SM-J39VT_S433_E1-50


title: HS_M1_1_sample 2346


title: Chip91481_r20_c52_Treated

description: Chip91481_r20_c52_Treated_CATGCGCATCA-AGGCAGAA


title: MM_M1_1_sample 1637


title: SM-J39VT_S432_E1-50


title: Chip91481_r20_c60_Untreated

description: Chip91481_r20_c60_Untreated_ATGAACCTCGT-AGGCAGAA


title: MM_M1_1_sample 1635


title: SM-J39VT_S431_E1-50


title: MM_M1_1_sample 1636


title: HS_M1_1_sample 2344


title: HS_M1_1_sample 2343


title: Chip91481_r20_c51_Treated

description: Chip91481_r20_c51_Treated_CATGCAGTCGT-AGGCAGAA


title: SM-J39VT_S426_E1-50


title: MM_M1_1_sample 1634


title: HS_M1_1_sample 2342


title: Chip91481_r20_c44_Untreated

description: Chip91481_r20_c44_Untreated_CAACCGAACTT-AGGCAGAA


title: Chip91481_r20_c4_Treated

description: Chip91481_r20_c4_Treated_CATTCTTCCAA-AGGCAGAA


title: HS_M1_1_sample 2340


title: HS_M1_1_sample 2341


title: SM-J39VT_S417_E1-50


title: Chip91481_r20_c43_Untreated

description: Chip91481_r20_c43_Untreated_CAACCATGCTT-AGGCAGAA


title: HS_M1_1_sample 2345


title: MM_M1_1_sample 1632


title: SM-J39VT_S415_E1-50

value: MOs


title: SM-J39VT_S414_E1-50


title: Chip91481_r20_c32_Treated

description: Chip91481_r20_c32_Treated_CCAATGACCAG-AGGCAGAA


title: MM_M1_1_sample 1630


title: SM-J39VT_S413_E1-50


title: HS_M1_1_sample 2339


title: HS_M1_1_sample 2338


title: Chip91481_r20_c3_Treated

description: Chip91481_r20_c3_Treated_CATTATCTTAG-AGGCAGAA


title: MM_M1_1_sample 1629


title: MM_M1_1_sample 1628


title: HS_M1_1_sample 2337


title: SM-J39VT_S412_E1-50


title: Chip91481_r20_c26_Treated

description: Chip91481_r20_c26_Treated_CCAATGATACC-AGGCAGAA


title: MM_M1_1_sample 1633


title: Chip91481_r20_c25_Treated

description: Chip91481_r20_c25_Treated_CCAATCTCCGC-AGGCAGAA


title: SM-J39VT_S420_E1-50


title: SM-J39VT_S411_E1-50


title: HS_M1_1_sample 2336


title: MM_M1_1_sample 1631


title: MM_M1_1_sample 1627


title: Chip91481_r20_c21_Untreated

description: Chip91481_r20_c21_Untreated_ATCTGGCCTTG-AGGCAGAA


title: SM-J39VT_S410_E1-50


title: Chip91481_r20_c17_Untreated

description: Chip91481_r20_c17_Untreated_ATGAGTTGCAA-AGGCAGAA


title: HS_M1_1_sample 2334


title: MM_M1_1_sample 1626


title: SM-J39VT_S409_E1-50


title: Chip91481_r20_c13_Untreated

description: Chip91481_r20_c13_Untreated_ATGCTCCTACC-AGGCAGAA


title: HS_M1_1_sample 2333


title: MM_M1_1_sample 1625


title: MM_M1_1_sample 1624


title: HS_M1_1_sample 2332


title: Chip91481_r20_c1_Treated

description: Chip91481_r20_c1_Treated_CCAACCTCCTT-AGGCAGAA


title: Chip91481_r2_c8_Treated

description: Chip91481_r2_c8_Treated_AACGATACTAA-AGGCAGAA


title: MM_M1_1_sample 1623


title: SM-J39VT_S407_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: HS_M1_1_sample 2331


title: SM-J39VT_S405_E1-50


title: SM-J39VT_S408_E1-50


title: HS_M1_1_sample 2330


title: MM_M1_1_sample 1622


title: HS_M1_1_sample 2335


title: MM_M1_1_sample 1621


title: HS_M1_1_sample 2329


title: Chip91481_r2_c55_Treated

description: Chip91481_r2_c55_Treated_AACGACTCGCA-AGGCAGAA


title: MM_M1_1_sample 1620


title: Chip91481_r2_c65_Untreated

description: Chip91481_r2_c65_Untreated_AACCAGAGTAT-AGGCAGAA


title: HS_M1_1_sample 2328


title: SM-J39VT_S402_E1-50


title: HS_M1_1_sample 2326


title: Chip91481_r2_c39_Untreated

description: Chip91481_r2_c39_Untreated_AACCGGCAGAG-AGGCAGAA


title: SM-J39VT_S401_E1-50


title: MM_M1_1_sample 1619


title: MM_M1_1_sample 1617


title: SM-J39VT_S404_E1-50


title: SM-J39VT_S403_E1-50


title: Chip91481_r2_c0_Treated

description: Chip91481_r2_c0_Treated_AACGAGGAATC-AGGCAGAA


title: HS_M1_1_sample 2327


title: MM_M1_1_sample 1614


title: Chip91481_r19_c58_Treated

description: Chip91481_r19_c58_Treated_CCAAGCTAACG-AGGCAGAA


title: Chip91481_r2_c16_Untreated

description: Chip91481_r2_c16_Untreated_AACCAGTCAGG-AGGCAGAA


title: HS_M1_1_sample 2322


title: SM-J39VT_S399_E1-50


title: SM-J39VT_S400_E1-50


title: Chip91481_r2_c36_Untreated

description: Chip91481_r2_c36_Untreated_AACCGTAGATT-AGGCAGAA


title: HS_M1_1_sample 2324


title: SM-J39VT_S406_E1-50


title: MM_M1_1_sample 1613


title: HS_M1_1_sample 2325


title: MM_M1_1_sample 1616


title: HS_M1_1_sample 2323


title: Chip91481_r19_c56_Treated

description: Chip91481_r19_c56_Treated_CCAATACCAGA-AGGCAGAA


title: Chip91481_r2_c66_Untreated

description: Chip91481_r2_c66_Untreated_AACCAGCAACT-AGGCAGAA


title: MM_M1_1_sample 1615


title: MM_M1_1_sample 1611


title: SM-J39VT_S398_E1-50


title: MM_M1_1_sample 1612


title: SM-J39VT_S395_E1-50


title: SM-J39VT_S397_E1-50


title: Chip91481_r2_c35_Treated

description: Chip91481_r2_c35_Treated_AACGCGCGGTT-AGGCAGAA


title: Chip91481_r19_c55_Treated

description: Chip91481_r19_c55_Treated_CCAATAATAGT-AGGCAGAA


title: SM-J39VT_S394_E1-50


title: HS_M1_1_sample 2319


title: HS_M1_1_sample 2318


title: SM-J39W8_S192_E1-50


title: HS_M1_1_sample 2321


title: MM_M1_1_sample 1609


title: MM_M1_1_sample 1610


title: Chip91481_r19_c31_Treated

description: Chip91481_r19_c31_Treated_CATCGATAGTC-AGGCAGAA


title: MM_M1_1_sample 1606


title: Chip91481_r19_c46_Untreated

description: Chip91481_r19_c46_Untreated_AGTTGGATGGA-AGGCAGAA


title: Chip91481_r19_c34_Treated

description: Chip91481_r19_c34_Treated_CAGCTGATAGT-AGGCAGAA


title: HS_M1_1_sample 2316


title: HS_M1_1_sample 2314


title: Chip91481_r19_c54_Treated

description: Chip91481_r19_c54_Treated_CCAAGGTTGAT-AGGCAGAA


title: HS_M1_1_sample 2317


title: MM_M1_1_sample 1608


title: SM-J39W8_S190_E1-50


title: SM-J39VT_S396_E1-50


title: MM_M1_1_sample 1607


title: HS_M1_1_sample 2315


title: SM-J39W8_S189_E1-50


title: Chip91481_r19_c42_Untreated

description: Chip91481_r19_c42_Untreated_ATAAGAACGGT-AGGCAGAA


title: Chip91481_r19_c0_Treated

description: Chip91481_r19_c0_Treated_CCAAGTTCCAT-AGGCAGAA


title: MM_M1_1_sample 1604


title: HS_M1_1_sample 2320


title: MM_M1_1_sample 1605


title: Chip91481_r19_c26_Treated

description: Chip91481_r19_c26_Treated_CATCTTCTTAA-AGGCAGAA


title: HS_M1_1_sample 2311


title: SM-J39W8_S191_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: SM-J39VT_S393_E1-50


title: SM-J39W8_S188_E1-50


title: Chip91481_r19_c29_Treated

description: Chip91481_r19_c29_Treated_CAGGCAATGAT-AGGCAGAA


title: Chip91481_r18_c9_Treated

description: Chip91481_r18_c9_Treated_CAGACGTTCTG-AGGCAGAA


title: MM_M1_1_sample 1601


title: MM_M1_1_sample 1603


title: HS_M1_1_sample 2313


title: HS_M1_1_sample 2312


title: HS_M1_1_sample 2310


title: MM_M1_1_sample 1600


title: MM_M1_1_sample 1602


title: Chip91481_r18_c60_Untreated

description: Chip91481_r18_c60_Untreated_AGTCTTCCAGT-AGGCAGAA


title: Chip91481_r18_c63_Untreated

description: Chip91481_r18_c63_Untreated_AGTCAGCAGGC-AGGCAGAA


title: SM-J39W8_S185_E1-50

value: 57 days


title: SM-J39W8_S168_E1-50


title: HS_M1_1_sample 2308


title: HS_M1_1_sample 2307


title: SM-J39W8_S163_E1-50


title: SM-J39W8_S187_E1-50


title: Chip91481_r18_c26_Treated

description: Chip91481_r18_c26_Treated_CCAAGCCGAGC-AGGCAGAA


title: MM_M1_1_sample 1595


title: MM_M1_1_sample 1598


title: SM-J39W8_S176_E1-50


title: SM-J39W8_S186_E1-50


title: SM-J39W8_S172_E1-50


title: HS_M1_1_sample 2309


title: MM_M1_1_sample 1599


title: Chip91481_r18_c48_Treated

description: Chip91481_r18_c48_Treated_CAATCCATAGT-AGGCAGAA


title: Chip91481_r18_c33_Treated

description: Chip91481_r18_c33_Treated_CCAACTGGCGA-AGGCAGAA


title: Chip91481_r18_c31_Treated

description: Chip91481_r18_c31_Treated_CCAAGCCAGCT-AGGCAGAA


title: HS_M1_1_sample 2306


title: MM_M1_1_sample 1594


title: MM_M1_1_sample 1596


title: HS_M1_1_sample 2305


title: SM-J39W8_S157_E1-50


title: Chip91481_r18_c34_Treated

description: Chip91481_r18_c34_Treated_CCAAGAACTAA-AGGCAGAA


title: SM-J39W8_S135_E1-50


title: HS_M1_1_sample 2304


title: Chip91481_r18_c23_Untreated

description: Chip91481_r18_c23_Untreated_AGTTGGTCTCG-AGGCAGAA


title: MM_M1_1_sample 1597


title: Chip91481_r18_c22_Untreated

description: Chip91481_r18_c22_Untreated_AGTTGCGAGGT-AGGCAGAA


title: SM-J39W8_S149_E1-50


title: SM-J39W8_S162_E1-50


title: MM_M1_1_sample 1591


title: Chip91481_r24_c56_Treated

description: Chip91481_r24_c56_Treated_CCGCTACTGGT-AGGCAGAA


title: HS_M1_1_sample 2302


title: HS_M1_1_sample 2301


title: Chip91481_r18_c15_Untreated

description: Chip91481_r18_c15_Untreated_AGTTGACCTGG-AGGCAGAA


title: HS_M1_1_sample 2300


title: SM-J39W8_S134_E1-50


title: MM_M1_1_sample 1592


title: HS_M1_1_sample 2303


title: MM_M1_1_sample 1593


title: HS_M1_1_sample 2299


title: Chip91481_r17_c67_Untreated

description: Chip91481_r17_c67_Untreated_ATTATCTAGAA-AGGCAGAA


title: MM_M1_1_sample 1590


title: MM_M1_1_sample 1589


title: SM-J39W8_S133_E1-50


title: Chip91481_r17_c65_Untreated

description: Chip91481_r17_c65_Untreated_ATGGTTGATGC-AGGCAGAA


title: HS_M1_1_sample 2297


title: Chip91481_r18_c16_Untreated

description: Chip91481_r18_c16_Untreated_AGTTGATAGAA-AGGCAGAA


title: HS_M1_1_sample 2298


title: MM_M1_1_sample 1588


title: MM_M1_1_sample 1587


title: SM-J39W8_S129_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: Chip91481_r17_c64_Untreated

description: Chip91481_r17_c64_Untreated_ATGGTCTTCAA-AGGCAGAA


title: SM-J39W8_S128_E1-50


title: MM_M1_1_sample 1586


title: Chip91481_r17_c63_Untreated

description: Chip91481_r17_c63_Untreated_ATGGTCTCGTA-AGGCAGAA


title: SM-J39W8_S132_E1-50


title: SM-J39W8_S126_E1-50


title: HS_M1_1_sample 2294


title: HS_M1_1_sample 2293


title: SM-J39W8_S125_E1-50


title: HS_M1_1_sample 2295


title: SM-J39W8_S127_E1-50


title: SM-J39W8_S131_E1-50


title: MM_M1_1_sample 1584


title: Chip91481_r16_c9_Treated

description: Chip91481_r16_c9_Treated_CAACCGCCTTG-AGGCAGAA


title: MM_M1_1_sample 1585


title: Chip91481_r17_c11_Treated

description: Chip91481_r17_c11_Treated_CCAAGAAGTTG-AGGCAGAA


title: Chip91481_r17_c43_Untreated

description: Chip91481_r17_c43_Untreated_AGTTACGCAAC-AGGCAGAA


title: SM-J39W8_S124_E1-50


title: MM_M1_1_sample 1580


title: Chip91481_r17_c16_Untreated

description: Chip91481_r17_c16_Untreated_ATTCCGGAGGT-AGGCAGAA


title: HS_M1_1_sample 2289


title: HS_M1_1_sample 2292


title: Chip91481_r17_c17_Untreated

description: Chip91481_r17_c17_Untreated_ATTCTAGTCAT-AGGCAGAA


title: HS_M1_1_sample 2290


title: MM_M1_1_sample 1582


title: Chip91481_r17_c42_Untreated

description: Chip91481_r17_c42_Untreated_AGTCTCTGGCT-AGGCAGAA


title: HS_M1_1_sample 2296


title: MM_M1_1_sample 1581


title: MM_M1_1_sample 1583


title: HS_M1_1_sample 2291


title: SM-J39W8_S122_E1-50


title: SM-J39W8_S123_E1-50


title: Chip91481_r16_c7_Treated

description: Chip91481_r16_c7_Treated_CAACGCATACG-AGGCAGAA


title: MM_M1_1_sample 1579


title: SM-J39W8_S120_E1-50


title: HS_M1_1_sample 2288


title: SM-J39W8_S121_E1-50


title: Chip91481_r16_c67_Untreated

description: Chip91481_r16_c67_Untreated_AGGTTCTATAA-AGGCAGAA


title: SM-J39W8_S119_E1-50


title: MM_M1_1_sample 1578


title: HS_M1_1_sample 2287


title: Chip91481_r16_c70_Untreated

description: Chip91481_r16_c70_Untreated_AGGTCGACGGT-AGGCAGAA


title: Chip91481_r16_c65_Untreated

description: Chip91481_r16_c65_Untreated_AGGTTAATATT-AGGCAGAA


title: MM_M1_1_sample 1577


title: SM-J39W8_S118_E1-50


title: HS_M1_1_sample 2285


title: HS_M1_1_sample 2286


title: Chip91481_r16_c61_Untreated

description: Chip91481_r16_c61_Untreated_AGGTTCGTCTC-AGGCAGAA


title: MM_M1_1_sample 1576


title: SM-J39W8_S117_E1-50


title: MM_M1_1_sample 1575


title: SM-J39W8_S116_E1-50


title: HS_M1_1_sample 2284


title: Chip91481_r16_c38_Untreated

description: Chip91481_r16_c38_Untreated_ATTATATTAGG-AGGCAGAA


title: SM-J39W8_S115_E1-50


title: HS_M1_1_sample 2283


title: MM_M1_1_sample 1572


title: SM-J39W8_S114_E1-50


title: MM_M1_1_sample 1574


title: MM_M1_1_sample 1573


title: Chip91481_r16_c36_Untreated

description: Chip91481_r16_c36_Untreated_ATGGTTCTATC-AGGCAGAA


title: Chip91481_r16_c35_Treated

description: Chip91481_r16_c35_Treated_CCAACGCTGCC-AGGCAGAA


title: HS_M1_1_sample 2282


title: HS_M1_1_sample 2281


title: Chip91481_r16_c22_Untreated

description: Chip91481_r16_c22_Untreated_AGGTCGTTGAA-AGGCAGAA


title: SM-J39W8_S113_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: MM_M1_1_sample 1570


title: SM-J39W8_S112_E1-50


title: Chip91481_r16_c21_Untreated

description: Chip91481_r16_c21_Untreated_AGGTCGCTCGG-AGGCAGAA


title: HS_M1_1_sample 2280


title: Chip91481_r16_c55_Treated

description: Chip91481_r16_c55_Treated_CAACGAATTAA-AGGCAGAA


title: HS_M1_1_sample 2279


title: SM-J39W8_S111_E1-50


title: MM_M1_1_sample 1568


title: HS_M1_1_sample 2278


title: Chip91481_r16_c17_Untreated

description: Chip91481_r16_c17_Untreated_AGGTTATCATA-AGGCAGAA


title: MM_M1_1_sample 1569


title: HS_M1_1_sample 2277


title: Chip91481_r16_c14_Untreated

description: Chip91481_r16_c14_Untreated_AGTAGGCGCTC-AGGCAGAA


title: Chip91481_r16_c16_Untreated

description: Chip91481_r16_c16_Untreated_AGGTCGTCGTC-AGGCAGAA


title: Chip91481_r16_c1_Treated

description: Chip91481_r16_c1_Treated_CAACGCAGAAC-AGGCAGAA


title: MM_M1_1_sample 1571


title: SM-J39W8_S107_E1-50


title: MM_M1_1_sample 1567


title: MM_M1_1_sample 1566


title: HS_M1_1_sample 2276


title: MM_M1_1_sample 1565


title: Chip91481_r15_c66_Untreated

description: Chip91481_r15_c66_Untreated_ACGCCTCGTAG-AGGCAGAA


title: SM-J39W8_S106_E1-50


title: HS_M1_1_sample 2275


title: SM-J39W8_S105_E1-50


title: SM-J39W8_S109_E1-50


title: MM_M1_1_sample 1564


title: HS_M1_1_sample 2274


title: SM-J39W8_S104_E1-50


title: SM-J39W8_S110_E1-50


title: HS_M1_1_sample 2273


title: HS_M1_1_sample 2272


title: SM-J39W8_S103_E1-50


title: Chip91481_r15_c6_Treated

description: Chip91481_r15_c6_Treated_AGGAGGTACTG-AGGCAGAA


title: MM_M1_1_sample 1563


title: MM_M1_1_sample 1562


title: Chip91481_r15_c59_Treated

description: Chip91481_r15_c59_Treated_AGGAACGCGTC-AGGCAGAA


title: SM-J39W8_S101_E1-50


title: MM_M1_1_sample 1561


title: HS_M1_1_sample 2271


title: Chip91481_r15_c57_Treated

description: Chip91481_r15_c57_Treated_AGAGTAACTCG-AGGCAGAA


title: Chip91481_r15_c51_Treated

description: Chip91481_r15_c51_Treated_AGAGTCTCCGA-AGGCAGAA


title: HS_M1_1_sample 2270


title: SM-J39W8_S100_E1-50


title: HS_M1_1_sample 2269


title: MM_M1_1_sample 1560


title: Chip91481_r15_c46_Untreated

description: Chip91481_r15_c46_Untreated_ACCAACTCTCA-AGGCAGAA


title: Chip91481_r15_c65_Untreated

description: Chip91481_r15_c65_Untreated_ACGCCAAGATG-AGGCAGAA


title: HS_M1_1_sample 2268


title: SM-J39W8_S098_E1-50


title: HS_M1_1_sample 2267


title: SM-J39W8_S097_E1-50


title: MM_M1_1_sample 1558


title: MM_M1_1_sample 1557


title: Chip91481_r15_c35_Treated

description: Chip91481_r15_c35_Treated_AGAAGACCTCT-AGGCAGAA


title: MM_M1_1_sample 1559


title: HS_M1_1_sample 2266


title: MM_M1_1_sample 1556


title: HS_M1_1_sample 2265


title: SM-GE5PH_S381_E1-50

value: 62 days

value: RV-dGdL-Cre


title: Chip91481_r15_c26_Treated

description: Chip91481_r15_c26_Treated_AGAAGAGTACC-AGGCAGAA


title: HS_M1_1_sample 2264


title: SM-GE5PH_S380_E1-50

value: MOp

value: RFP-positive


title: SM-J39W8_S099_E1-50


title: MM_M1_1_sample 1555


title: SM-GE5PH_S379_E1-50


title: MM_M1_1_sample 1554


title: HS_M1_1_sample 2263


title: Chip91481_r15_c17_Untreated

description: Chip91481_r15_c17_Untreated_ACGCGCTGGAG-AGGCAGAA


title: MM_M1_1_sample 1553


title: SM-GE5PH_S378_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: Chip91481_r15_c36_Untreated

description: Chip91481_r15_c36_Untreated_ACCAAGACGTT-AGGCAGAA


title: SM-GE5PH_S377_E1-50


title: HS_M1_1_sample 2262


title: Chip91481_r15_c1_Treated

description: Chip91481_r15_c1_Treated_AGGCGTCGAGT-AGGCAGAA


title: HS_M1_1_sample 2261


title: Chip91481_r15_c12_Untreated

description: Chip91481_r15_c12_Untreated_ACGTACGGAAG-AGGCAGAA


title: MM_M1_1_sample 1551


title: HS_M1_1_sample 2260


title: SM-GE5PX_S120_E1-50

value: 56 days


title: Chip91481_r14_c66_Untreated

description: Chip91481_r14_c66_Untreated_ACCAACCGATC-AGGCAGAA


title: Chip91481_r14_c67_Untreated

description: Chip91481_r14_c67_Untreated_ACCAACGAGCC-AGGCAGAA


title: MM_M1_1_sample 1548

value: M


title: MM_M1_1_sample 1550


title: MM_M1_1_sample 1547


title: SM-GE5PX_S119_E1-50


title: HS_M1_1_sample 2258


title: SM-GE5PX_S115_E1-50


title: Chip91481_r14_c62_Untreated

description: Chip91481_r14_c62_Untreated_ACCAACGCTAC-AGGCAGAA

value: Invasive Ductal Carcinoma


title: MM_M1_1_sample 1546

value: brain


title: Chip91481_r15_c21_Untreated

description: Chip91481_r15_c21_Untreated_ACGCAACCGCC-AGGCAGAA


title: HS_M1_1_sample 2255

value: Brain


title: Chip91481_r14_c70_Untreated

description: Chip91481_r14_c70_Untreated_AATAACGGCGT-AGGCAGAA


title: SM-GE5PX_S114_E1-50


title: SM-GE5PX_S117_E1-50


title: Chip91481_r14_c48_Treated

description: Chip91481_r14_c48_Treated_AGAACTAGCAG-AGGCAGAA


title: SM-GE5PX_S118_E1-50


title: SM-GE5PX_S113_E1-50


title: HS_M1_1_sample 2254


title: MM_M1_1_sample 1549


title: HS_M1_1_sample 2259


title: Chip91481_r14_c39_Untreated

description: Chip91481_r14_c39_Untreated_ACGAAGTACGT-AGGCAGAA


title: Chip91481_r14_c52_Treated

description: Chip91481_r14_c52_Treated_AGAACGTACGA-AGGCAGAA


title: SM-GE5PX_S116_E1-50


title: Chip91481_r14_c51_Treated

description: Chip91481_r14_c51_Treated_AGAACGGTCAG-AGGCAGAA


title: HS_M1_1_sample 2257


title: Chip91481_r14_c38_Untreated

description: Chip91481_r14_c38_Untreated_ACGATACGGTA-AGGCAGAA


title: MM_M1_1_sample 1545


title: Chip91481_r14_c37_Untreated

description: Chip91481_r14_c37_Untreated_ACGAGACGGCT-AGGCAGAA


title: MM_M1_1_sample 1542


title: MM_M1_1_sample 1552


title: HS_M1_1_sample 2251


title: SM-GE5PX_S100_E1-50


title: SM-GE5PX_S099_E1-50


title: SM-GE5PX_S104_E1-50


title: HS_M1_1_sample 2256


title: SM-GE5PX_S098_E1-50


title: MM_M1_1_sample 1544


title: MM_M1_1_sample 1543


title: MM_M1_1_sample 1540


title: MM_M1_1_sample 1541


title: HS_M1_1_sample 2249


title: SM-GE5PX_S101_E1-50


title: SM-GE5PX_S097_E1-50


title: Chip91481_r14_c35_Treated

description: Chip91481_r14_c35_Treated_AGAATCTATGA-AGGCAGAA


title: SM-GE5PX_S102_E1-50


title: MM_M1_1_sample 1536


title: Chip91481_r14_c11_Treated

description: Chip91481_r14_c11_Treated_AGAAGAAGACT-AGGCAGAA


title: HS_M1_1_sample 2250


title: HS_M1_1_sample 2253


title: HS_M1_1_sample 2246


title: Chip91481_r14_c29_Treated

description: Chip91481_r14_c29_Treated_AGAATCGTCGA-AGGCAGAA


title: HS_M1_1_sample 2252


title: MM_M1_1_sample 1537


title: Chip91481_r14_c25_Treated

description: Chip91481_r14_c25_Treated_AGAGAACCAAC-AGGCAGAA


title: MM_M1_1_sample 1538


title: Chip91481_r14_c32_Treated

description: Chip91481_r14_c32_Treated_AGAGAACCTTA-AGGCAGAA


title: MM_M1_1_sample 1539


title: Chip91481_r14_c0_Treated

description: Chip91481_r14_c0_Treated_AGAAGAAGCTC-AGGCAGAA


title: SM-GE5PX_S032_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: MM_M1_1_sample 1535


title: HS_M1_1_sample 2244


title: HS_M1_1_sample 2247


title: SM-GE5PX_S031_E1-50


title: Chip91481_r13_c65_Untreated

description: Chip91481_r13_c65_Untreated_ACCTAGTAACG-AGGCAGAA


title: HS_M1_1_sample 2243


title: Chip91481_r13_c67_Untreated

description: Chip91481_r13_c67_Untreated_ACGAACGACGC-AGGCAGAA


title: Chip91481_r13_c63_Untreated

description: Chip91481_r13_c63_Untreated_ACCGAAGAATT-AGGCAGAA


title: MM_M1_1_sample 1533


title: HS_M1_1_sample 2248


title: MM_M1_1_sample 1531


title: HS_M1_1_sample 2245


title: MM_M1_1_sample 1532


title: HS_M1_1_sample 2241


title: SM-GE5PX_S029_E1-50


title: Chip91481_r13_c47_Untreated

description: Chip91481_r13_c47_Untreated_AATACCAATAT-AGGCAGAA


title: Chip91481_r13_c61_Untreated

description: Chip91481_r13_c61_Untreated_ACGAACCTATG-AGGCAGAA


title: Chip91481_r13_c54_Treated

description: Chip91481_r13_c54_Treated_AGAATACCAAG-AGGCAGAA


title: SM-GE5PX_S030_E1-50


title: HS_M1_1_sample 2242


title: MM_M1_1_sample 1530


title: SM-GE5PX_S103_E1-50


title: HS_M1_1_sample 2240


title: Chip91481_r13_c46_Untreated

description: Chip91481_r13_c46_Untreated_AATAACGACCG-AGGCAGAA


title: SM-GE5PX_S026_E1-50


title: HS_M1_1_sample 2239


title: MM_M1_1_sample 1534


title: MM_M1_1_sample 1529


title: HS_M1_1_sample 2238


title: SM-GE5PX_S025_E1-50


title: MM_M1_1_sample 1528


title: Chip91481_r13_c43_Untreated

description: Chip91481_r13_c43_Untreated_ACCAACCGTAT-AGGCAGAA


title: HS_M1_1_sample 2237


title: SM-GE5PX_S024_E1-50


title: MM_M1_1_sample 1527


title: SM-GE5PX_S027_E1-50


title: Chip91481_r13_c27_Treated

description: Chip91481_r13_c27_Treated_AGAACGCTTAA-AGGCAGAA


title: Chip91481_r13_c41_Untreated

description: Chip91481_r13_c41_Untreated_AATAATTGAAG-AGGCAGAA


title: MM_M1_1_sample 1526


title: SM-GE5PX_S023_E1-50


title: HS_M1_1_sample 2236


title: HS_M1_1_sample 2235


title: Chip91481_r13_c18_Untreated

description: Chip91481_r13_c18_Untreated_ACGACCGCAGT-AGGCAGAA


title: Chip91481_r13_c20_Untreated

description: Chip91481_r13_c20_Untreated_ACGACTCTGAT-AGGCAGAA


title: MM_M1_1_sample 1525


title: SM-GE5PX_S021_E1-50


title: SM-GE5PX_S020_E1-50


title: HS_M1_1_sample 2234


title: SM-GE5PX_S022_E1-50


title: MM_M1_1_sample 1524


title: HS_M1_1_sample 2232


title: HS_M1_1_sample 2233


title: MM_M1_1_sample 1521


title: MM_M1_1_sample 1522


title: Chip91481_r13_c10_Treated

description: Chip91481_r13_c10_Treated_AGAATATCTAT-AGGCAGAA


title: Chip91481_r12_c7_Treated

description: Chip91481_r12_c7_Treated_AGAACGCCGAG-AGGCAGAA


title: SM-GE5PX_S018_E1-50


title: SM-GE5PX_S019_E1-50


title: MM_M1_1_sample 1519


title: HS_M1_1_sample 2230


title: MM_M1_1_sample 1520


title: Chip91481_r12_c64_Untreated

description: Chip91481_r12_c64_Untreated_AAGAGGCCTCG-AGGCAGAA


title: SM-GE5PX_S017_E1-50


title: HS_M1_1_sample 2229


title: Chip91481_r12_c61_Untreated

description: Chip91481_r12_c61_Untreated_AAGCAACTTAT-AGGCAGAA


title: Chip91481_r12_c55_Treated

description: Chip91481_r12_c55_Treated_AGAACGATCCA-AGGCAGAA


title: Chip91481_r12_c47_Untreated

description: Chip91481_r12_c47_Untreated_ACCGCATCCAA-AGGCAGAA


title: MM_M1_1_sample 1518


title: HS_M1_1_sample 2231


title: SM-GE5PX_S014_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: MM_M1_1_sample 1517


title: SM-GE5PX_S015_E1-50


title: SM-GE5PX_S016_E1-50


title: SM-GE5PX_S013_E1-50


title: HS_M1_1_sample 2227


title: HS_M1_1_sample 2228


title: HS_M1_1_sample 2226


title: Chip91481_r12_c29_Treated

description: Chip91481_r12_c29_Treated_AGAAGTTGAAT-AGGCAGAA


title: SM-GE5PX_S012_E1-50


title: MM_M1_1_sample 1516


title: Chip91481_r12_c25_Treated

description: Chip91481_r12_c25_Treated_AGAATACGACC-AGGCAGAA


title: HS_M1_1_sample 2225


title: HS_M1_1_sample 2224


title: MM_M1_1_sample 1513


title: Chip91481_r12_c21_Untreated

description: Chip91481_r12_c21_Untreated_AAGAGGTCGAA-AGGCAGAA


title: HS_M1_1_sample 2222


title: Chip91481_r12_c15_Untreated

description: Chip91481_r12_c15_Untreated_AAGAGTAATCA-AGGCAGAA


title: HS_M1_1_sample 2223


title: MM_M1_1_sample 1512


title: MM_M1_1_sample 1509


title: SM-GE5PX_S009_E1-50


title: Chip91481_r11_c9_Treated

description: Chip91481_r11_c9_Treated_AGAAGATTCTG-AGGCAGAA


title: MM_M1_1_sample 1511


title: HS_M1_1_sample 2220


title: MM_M1_1_sample 1515


title: Chip91481_r11_c68_Untreated

description: Chip91481_r11_c68_Untreated_ACCATATATCT-AGGCAGAA


title: Chip91481_r11_c61_Untreated

description: Chip91481_r11_c61_Untreated_ACCATACTATA-AGGCAGAA


title: HS_M1_1_sample 2221


title: SM-GE5PW_S312_E1-50


title: SM-GE5PW_S309_E1-50


title: Chip91481_r11_c60_Untreated

description: Chip91481_r11_c60_Untreated_ACCAGACGCGT-AGGCAGAA


title: HS_M1_1_sample 2218


title: MM_M1_1_sample 1514


title: HS_M1_1_sample 2219


title: MM_M1_1_sample 1508


title: SM-GE5PW_S310_E1-50


title: SM-GE5PX_S010_E1-50


title: SM-GE5PX_S011_E1-50


title: Chip91481_r11_c70_Untreated

description: Chip91481_r11_c70_Untreated_ACCAATCTAGC-AGGCAGAA


title: MM_M1_1_sample 1507


title: Chip91481_r11_c50_Treated

description: Chip91481_r11_c50_Treated_AGAAGGAGAGC-AGGCAGAA


title: MM_M1_1_sample 1510


title: HS_M1_1_sample 2217


title: SM-GE5PW_S308_E1-50


title: SM-GE5PW_S311_E1-50


title: Chip91481_r11_c37_Untreated

description: Chip91481_r11_c37_Untreated_AAGAGCTCTGG-AGGCAGAA


title: HS_M1_1_sample 2216


title: SM-GE5PW_S307_E1-50


title: Chip91481_r11_c24_Treated

description: Chip91481_r11_c24_Treated_AGAACCAAGAC-AGGCAGAA


title: Chip91481_r11_c4_Treated

description: Chip91481_r11_c4_Treated_AGAAGCAATTC-AGGCAGAA


title: MM_M1_1_sample 1504


title: SM-GE5PW_S305_E1-50


title: SM-GE5PW_S304_E1-50


title: MM_M1_1_sample 1502


title: SM-GE5PW_S306_E1-50


title: HS_M1_1_sample 2215


title: MM_M1_1_sample 1503


title: Chip91481_r11_c20_Untreated

description: Chip91481_r11_c20_Untreated_ACCATCGGATG-AGGCAGAA


title: HS_M1_1_sample 2213


title: Chip91481_r10_c61_Untreated

description: Chip91481_r10_c61_Untreated_AACTATCCATA-AGGCAGAA


title: SM-GE5PW_S303_E1-50


title: HS_M1_1_sample 2212


title: Chip91481_r11_c18_Untreated

description: Chip91481_r11_c18_Untreated_ACCATAATACT-AGGCAGAA


title: MM_M1_1_sample 1506


title: MM_M1_1_sample 1505


title: HS_M1_1_sample 2210


title: HS_M1_1_sample 2211


title: MM_M1_1_sample 1500


title: Chip91481_r10_c55_Treated

description: Chip91481_r10_c55_Treated_AAGAATAGGAA-AGGCAGAA


title: MM_M1_1_sample 1501


title: SM-GE5PW_S301_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: HS_M1_1_sample 2214


title: SM-GE5PW_S300_E1-50


title: MM_M1_1_sample 1498


title: HS_M1_1_sample 2209


title: MM_M1_1_sample 1499


title: Chip91481_r10_c54_Treated

description: Chip91481_r10_c54_Treated_AAGAAGTTGAC-AGGCAGAA


title: Chip91481_r10_c52_Treated

description: Chip91481_r10_c52_Treated_AAGAAGCTTAA-AGGCAGAA


title: Chip91481_r10_c3_Treated

description: Chip91481_r10_c3_Treated_ACTCCGAATCT-AGGCAGAA


title: SM-GE5PW_S302_E1-50


title: SM-GE5PW_S298_E1-50


title: SM-GE5PW_S299_E1-50


title: MM_M1_1_sample 1496


title: HS_M1_1_sample 2206


title: SM-GE5PW_S297_E1-50


title: HS_M1_1_sample 2208


title: Chip91481_r10_c20_Untreated

description: Chip91481_r10_c20_Untreated_AAGAGCGTAAT-AGGCAGAA


title: MM_M1_1_sample 1495


title: MM_M1_1_sample 1497


title: Chip91481_r10_c18_Untreated

description: Chip91481_r10_c18_Untreated_AAGAGCCGCGT-AGGCAGAA


title: SM-GE5PW_S296_E1-50


title: HS_M1_1_sample 2205


title: MM_M1_1_sample 1494


title: Chip91481_r10_c17_Untreated

description: Chip91481_r10_c17_Untreated_AAGAGCATCGG-AGGCAGAA


title: HS_M1_1_sample 2203


title: SM-GE5PW_S295_E1-50


title: MM_M1_1_sample 1493


title: Chip91481_r10_c1_Treated

description: Chip91481_r10_c1_Treated_AGAACCAGCGC-AGGCAGAA


title: SM-GE5PW_S294_E1-50


title: HS_M1_1_sample 2202


title: SM-GE5PX_S028_E1-50


title: SM-GE5PW_S293_E1-50


title: HS_M1_1_sample 2201


title: HS_M1_1_sample 2207


title: MM_M1_1_sample 1491


title: Chip91481_r1_c6_Treated

description: Chip91481_r1_c6_Treated_AACGCGCCAGT-AGGCAGAA


title: Chip91481_r1_c7_Treated

description: Chip91481_r1_c7_Treated_AACGCGGTTCC-AGGCAGAA


title: HS_M1_1_sample 2200


title: Chip91481_r1_c58_Treated

description: Chip91481_r1_c58_Treated_AACGCCAACCA-AGGCAGAA


title: SM-GE5PW_S292_E1-50


title: MM_M1_1_sample 1490


title: Chip91481_r1_c55_Treated

description: Chip91481_r1_c55_Treated_AACGCCTATAA-AGGCAGAA


title: HS_M1_1_sample 2198


title: HS_M1_1_sample 2199


title: MM_M1_1_sample 1489


title: SM-GE5PW_S291_E1-50


title: Chip91481_r1_c48_Treated

description: Chip91481_r1_c48_Treated_AACGCCGAGTT-AGGCAGAA


title: Chip91481_r1_c39_Untreated

description: Chip91481_r1_c39_Untreated_AACCAATGCGG-AGGCAGAA


title: HS_M1_1_sample 2197


title: SM-GE5PW_S290_E1-50


title: SM-GE5PW_S289_E1-50


title: SM-GE5PW_S208_E1-50


title: HS_M1_1_sample 2196


title: MM_M1_1_sample 1488


title: MM_M1_1_sample 1486


title: MM_M1_1_sample 1487


title: HS_M1_1_sample 2195


title: MM_M1_1_sample 1485


title: MM_M1_1_sample 1492


title: SM-GE5PW_S207_E1-50


title: Chip91481_r0_c65_Untreated

description: Chip91481_r0_c65_Untreated_AACCAACTGAC-AGGCAGAA


title: HS_M1_1_sample 2193


title: Chip91481_r1_c35_Treated

description: Chip91481_r1_c35_Treated_AACGACCTAAG-AGGCAGAA


title: HS_M1_1_sample 2194


title: MM_M1_1_sample 1484


title: Chip91481_r1_c1_Treated

description: Chip91481_r1_c1_Treated_AACGCGGTCAT-AGGCAGAA


title: Chip91481_r0_c54_Treated

description: Chip91481_r0_c54_Treated_AACCTTGCAAG-AGGCAGAA


title: SM-GE5PW_S206_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: HS_M1_1_sample 2192


title: Chip91481_r0_c63_Untreated

description: Chip91481_r0_c63_Untreated_AACCAACCGCA-AGGCAGAA


title: SM-GE5PW_S203_E1-50


title: HS_M1_1_sample 2191


title: SM-GE5PW_S205_E1-50


title: SM-GE5PW_S204_E1-50


title: MM_M1_1_sample 1482


title: MM_M1_1_sample 1483


title: HS_M1_1_sample 2190


title: SM-GE5PW_S201_E1-50


title: MM_M1_1_sample 1479


title: MM_M1_1_sample 1481


title: MM_M1_1_sample 1480


title: Chip91481_r0_c44_Untreated

description: Chip91481_r0_c44_Untreated_AACCGCGGCGC-AGGCAGAA


title: HS_M1_1_sample 2188


title: Chip91481_r0_c43_Untreated

description: Chip91481_r0_c43_Untreated_AACCGCGCTCA-AGGCAGAA


title: HS_M1_1_sample 2189


title: Chip91481_r0_c40_Untreated

description: Chip91481_r0_c40_Untreated_AACCGCAGCTG-AGGCAGAA


title: SM-GE5PW_S200_E1-50


title: Chip91481_r0_c45_Untreated

description: Chip91481_r0_c45_Untreated_AACCGCAATGC-AGGCAGAA


title: HS_M1_1_sample 2187


title: Chip91481_r0_c27_Treated

description: Chip91481_r0_c27_Treated_AACGCATAACT-AGGCAGAA


title: MM_M1_1_sample 1477


title: SM-GE5PW_S198_E1-50


title: MM_M1_1_sample 1478


title: SM-GE5PW_S199_E1-50


title: SM-GE5PW_S202_E1-50


title: HS_M1_1_sample 2186


title: Chip91481_r0_c23_Untreated

description: Chip91481_r0_c23_Untreated_AACCAAGCAGT-AGGCAGAA


title: SM-GE5PW_S197_E1-50


title: MM_M1_1_sample 1475


title: HS_M1_1_sample 2185


title: TSA2-2

data_processing:
Single-Cell RNA Seq (BaseSpace Workflow)-1.0.0
Isas (Analysis Software)-0.133
STAR (Aligner)-STAR_2.5.2b
SAMtools-1.3
Genome_build: GRCh38
Supplementary_files_format_and_content: tab-delimited text file includes UMI compressed count values for each cell

extract_protocol:
Illumina/BioRad Surecell scRNAseq protocol, no offline RNA isolation performed
Illumina/BioRad Surecell scRNAseq library construction protocol


title: SM-GE5PW_S196_E1-50


title: MM_M1_1_sample 1476


title: TSA2-1


title: HS_M1_1_sample 2183


title: SM-GE5PW_S195_E1-50


title: HS_M1_1_sample 2184


title: MM_M1_1_sample 1473


title: HS_M1_1_sample 2182


title: MM_M1_1_sample 1474


title: TSA1-2


title: SM-GE5PW_S194_E1-50


title: MM_M1_1_sample 1472


title: TSA1-1


title: HS_M1_1_sample 2181


title: DMSO2-2


title: SM-GE5US_S072_E1-50


title: MM_M1_1_sample 1471


title: DMSO2-1


title: MM_M1_1_sample 1470


title: HS_M1_1_sample 2179


title: MM_M1_1_sample 1468


title: DMSO1-2


title: MM_M1_1_sample 1469


title: SM-GE5V6_S288_E1-50


title: HS_M1_1_sample 2178


title: DMSO1-1


title: MM_M1_1_sample 1465


title: TSA4 (4-TSA_48hr)

data_processing:
Data Formatting - bcltofastq-2.19.0
Data Cleaning - Trimmomatic-0.36, TRAILING:13 LEADING:13 ILLUMINACLIP:adapters.fasta:2:30:10 SLIDINGWINDOW:4:20 MINLEN:15
Genome Alignment - STAR_2.5.2b, --twopassMode Basic --runMode alignReads --genomeDir ${GENOME} --readFilesIn ${SAMPLE} --outSAMtype BAM SortedByCoordinate --outSAMstrandField intronMotif --outFilterIntronMotifs RemoveNoncanonical
Read Quantification1 - subread-1.5.0p3, featurecounts, -s 2 -t exon -g gene_name
Genome_build: GRCh38 + gencode25
Supplementary_files_format_and_content: tab-delimited text file includes raw count values for each sample

extract_protocol:
Qiagen Rneasy PLUS RNA isoslation
Clontech SMARTer Ultra low RNAseq library construction followed by NexteraXT with 150ng input cDNA


title: MM_M1_1_sample 1466


title: TSA3 (TSA)


title: HS_M1_1_sample 2176


title: HS_M1_1_sample 2180


title: HS_M1_1_sample 2177


title: SM-GE5US_S071_E1-50


title: SM-GE5V6_S287_E1-50


title: SM-GE5V6_S285_E1-50


title: SM-GE5US_S070_E1-50


title: MM_M1_1_sample 1464


title: TSA1 (TSA_1)


title: SM-GE5V6_S283_E1-50


title: SM-GE5V6_S284_E1-50


title: HS_M1_1_sample 2173


title: HS_M1_1_sample 2174


title: MM_M1_1_sample 1467


title: DMSO4 (3-DMSO_48hr)


title: TSA2 (TSA_2)


title: HS_M1_1_sample 2175


title: MM_M1_1_sample 1463


title: HS_M1_1_sample 2172


title: SM-GE5V6_S286_E1-50


title: DMSO1 (DMSO_1)


title: MM_M1_1_sample 1462


title: HS_M1_1_sample 2170


title: HS_M1_1_sample 2171


title: HS_M1_1_sample 2169


title: SM-GE5V6_S278_E1-50


title: SM-GE5V6_S279_E1-50


title: SM-GE5V6_S282_E1-50


title: SM-GE5V6_S277_E1-50


title: HS_M1_1_sample 2168


title: MM_M1_1_sample 1458


title: MM_M1_1_sample 1457


title: DMSO3 (DMSO)


title: TSA_76 (2_C94)

extract_protocol:
Fluidigm C1 scRNAseq protocol, no offline extraction performed
Fluidigm C1 scRNAseq library construction protocol


title: SM-GE5V6_S281_E1-50


title: TSA_75 (2_C93)


title: MM_M1_1_sample 1459


title: SM-GE5V6_S280_E1-50


title: TSA_74 (2_C92)


title: MM_M1_1_sample 1454


title: MM_M1_1_sample 1456


title: HS_M1_1_sample 2166


title: SM-GE5V6_S273_E1-50


title: HS_M1_1_sample 2163


title: TSA_77 (2_C95)


title: MM_M1_1_sample 1460


title: SM-GE5V6_S176_E1-50


title: TSA_72 (2_C90)


title: HS_M1_1_sample 2161


title: HS_M1_1_sample 2165


title: SM-GE5V6_S275_E1-50


title: MM_M1_1_sample 1451


title: TSA_70 (2_C88)


title: HS_M1_1_sample 2164


title: TSA_78 (2_C96)


title: HS_M1_1_sample 2160


title: SM-GE5V6_S274_E1-50


title: SM-GE5V6_S174_E1-50


title: HS_M1_1_sample 2167


title: MM_M1_1_sample 1448


title: HS_M1_1_sample 2158


title: MM_M1_1_sample 1461


title: SM-GE5V6_S171_E1-50


title: TSA_67 (2_C85)


title: SM-GE5V6_S276_E1-50


title: TSA_71 (2_C89)


title: MM_M1_1_sample 1455


title: TSA_65 (2_C83)


title: TSA_73 (2_C91)


title: HS_M1_1_sample 2155


title: SM-GE5V6_S169_E1-50


title: HS_M1_1_sample 2156


title: MM_M1_1_sample 1445


title: MM_M1_1_sample 1449


title: DMSO2 (DMSO_2)


title: MM_M1_1_sample 1444


title: SM-GE5V6_S168_E1-50


title: SM-GE5V6_S167_E1-50


title: HS_M1_1_sample 2153


title: TSA_66 (2_C84)


title: HS_M1_1_sample 2157


title: HS_M1_1_sample 2162


title: SM-GE5V6_S173_E1-50


title: TSA_69 (2_C87)


title: HS_M1_1_sample 2152


title: HS_M1_1_sample 2159


title: SM-GE5V6_S175_E1-50


title: MM_M1_1_sample 1450


title: TSA_60 (2_C77)


title: SM-GE5V6_S172_E1-50


title: HS_M1_1_sample 2151


title: HS_M1_1_sample 2150


title: MM_M1_1_sample 1453


title: SM-GE5V6_S170_E1-50


title: MM_M1_1_sample 1443


title: MM_M1_1_sample 1447


title: TSA_64 (2_C82)


title: SM-GE5V6_S163_E1-50


title: HS_M1_1_sample 2148


title: SM-GE5V6_S162_E1-50


title: MM_M1_1_sample 1439


title: HS_M1_1_sample 2154


title: TSA_68 (2_C86)


title: MM_M1_1_sample 1452


title: TSA_63 (2_C81)


title: TSA_56 (2_C71)


title: HS_M1_1_sample 2146


title: MM_M1_1_sample 1442


title: SM-GE5V6_S165_E1-50


title: MM_M1_1_sample 1446


title: TSA_55 (2_C68)


title: TSA_61 (2_C79)


title: SM-GE5V6_S079_E1-50


title: MM_M1_1_sample 1435


title: MM_M1_1_sample 1441


title: TSA_58 (2_C73)


title: TSA_62 (2_C80)


title: TSA_57 (2_C72)


title: MM_M1_1_sample 1434


title: MM_M1_1_sample 1440


title: MM_M1_1_sample 1436


title: SM-GE5V6_S166_E1-50


title: HS_M1_1_sample 2143


title: MM_M1_1_sample 1437


title: SM-GE5V6_S077_E1-50


title: HS_M1_1_sample 2147


title: HS_M1_1_sample 2145


title: HS_M1_1_sample 2142


title: HS_M1_1_sample 2144


title: TSA_51 (2_C64)


title: SM-GE5V6_S164_E1-50


title: MM_M1_1_sample 1438


title: MM_M1_1_sample 1431


title: SM-GE5V6_S080_E1-50


title: MM_M1_1_sample 1430


title: SM-GE5V6_S161_E1-50


title: TSA_54 (2_C67)


title: SM-GE5V6_S073_E1-50


title: HS_M1_1_sample 2149


title: MM_M1_1_sample 1433


title: SM-GE5V6_S078_E1-50


title: TSA_53 (2_C66)


title: SM-GE5V6_S075_E1-50


title: TSA_49 (2_C61)


title: TSA_52 (2_C65)


title: HS_M1_1_sample 2141


title: MM_M1_1_sample 1429


title: MM_M1_1_sample 1432


title: HS_M1_1_sample 2140


title: HS_M1_1_sample 2139


title: TSA_46 (2_C58)


title: TSA_59 (2_C76)


title: HS_M1_1_sample 2136


title: SM-GE5V6_S072_E1-50


title: HS_M1_1_sample 2137


title: SM-GE5V6_S074_E1-50


title: MM_M1_1_sample 1426


title: SM-GE5V6_S076_E1-50


title: MM_M1_1_sample 1427


title: SM-GE5V6_S069_E1-50


title: SM-GE5V6_S071_E1-50


title: TSA_45 (2_C57)


title: MM_M1_1_sample 1428


title: TSA_47 (2_C59)


title: TSA_50 (2_C62)


title: HS_M1_1_sample 2134


title: SM-GE5V6_S070_E1-50


title: TSA_43 (2_C55)


title: TSA_48 (2_C60)


title: SM-GE5V6_S067_E1-50


title: HS_M1_1_sample 2138


title: TSA_42 (2_C54)


title: HS_M1_1_sample 2132


title: SM-GE5V6_S066_E1-50


title: MM_M1_1_sample 1424


title: TSA_44 (2_C56)


title: MM_M1_1_sample 1425


title: HS_M1_1_sample 2135


title: SM-GE5V6_S068_E1-50


title: MM_M1_1_sample 1423


title: MM_M1_1_sample 1422


title: HS_M1_1_sample 2133


title: MM_M1_1_sample 1421


title: TSA_40 (2_C52)


title: TSA_41 (2_C53)


title: HS_M1_1_sample 2129


title: SM-GE5VD_S334_E1-50

value: F

value: 50 days


title: TSA_39 (2_C50)


title: HS_M1_1_sample 2131


title: TSA_37 (2_C46)


title: MM_M1_1_sample 1418


title: SM-GE5VD_S331_E1-50


title: MM_M1_1_sample 1419


title: SM-GE5V6_S065_E1-50


title: HS_M1_1_sample 2126


title: MM_M1_1_sample 1420


title: SM-GE5VD_S330_E1-50


title: SM-GE5VD_S328_E1-50


title: HS_M1_1_sample 2125


title: TSA_35 (2_C43)


title: MM_M1_1_sample 1414


title: HS_M1_1_sample 2124


title: HS_M1_1_sample 2130


title: SM-GE5VD_S327_E1-50


title: TSA_33 (2_C40)


title: HS_M1_1_sample 2123


title: HS_M1_1_sample 2128


title: TSA_38 (2_C48)


title: SM-GE5VD_S336_E1-50


title: HS_M1_1_sample 2122


title: SM-GE5VD_S325_E1-50


title: HS_M1_1_sample 2127


title: TSA_32 (2_C39)


title: TSA_36 (2_C45)


title: TSA_34 (2_C41)


title: MM_M1_1_sample 1415


title: SM-GE5VD_S333_E1-50


title: TSA_30 (2_C37)


title: MM_M1_1_sample 1416


title: MM_M1_1_sample 1410


title: SM-GE5VD_S321_E1-50


title: TSA_28 (2_C35)


title: HS_M1_1_sample 2118


title: MM_M1_1_sample 1409


title: SM-GE5VD_S326_E1-50


title: MM_M1_1_sample 1413


title: TSA_26 (2_C33)


title: MM_M1_1_sample 1407


title: SM-GE5VD_S323_E1-50


title: HS_M1_1_sample 2116


title: HS_M1_1_sample 2120


title: SM-GE5VD_S255_E1-50


title: TSA_29 (2_C36)


title: TSA_27 (2_C34)


title: TSA_31 (2_C38)


title: SM-GE5VD_S324_E1-50


title: MM_M1_1_sample 1417


title: MM_M1_1_sample 1411


title: HS_M1_1_sample 2115


title: SM-GE5VD_S322_E1-50


title: HS_M1_1_sample 2121


title: SM-GE5VD_S256_E1-50


title: MM_M1_1_sample 1412


title: HS_M1_1_sample 2114


title: HS_M1_1_sample 2119


title: MM_M1_1_sample 1406


title: MM_M1_1_sample 1408


title: SM-GE5VD_S251_E1-50


title: MM_M1_1_sample 1405


title: SM-GE5VD_S252_E1-50


title: MM_M1_1_sample 1403


title: HS_M1_1_sample 2117


title: TSA_25 (2_C32)


title: TSA_23 (2_C30)


title: SM-GE5VD_S254_E1-50


title: MM_M1_1_sample 1404


title: TSA_24 (2_C31)


title: TSA_22 (2_C28)


title: HS_M1_1_sample 2112


title: MM_M1_1_sample 1402


title: HS_M1_1_sample 2111


title: MM_M1_1_sample 1401


title: TSA_21 (2_C27)


title: SM-GE5VD_S250_E1-50


title: HS_M1_1_sample 2113


title: SM-GE5VD_S248_E1-50


title: TSA_20 (2_C26)


title: MM_M1_1_sample 1400


title: MM_M1_1_sample 1399


title: SM-GE5VD_S247_E1-50


title: SM-GE5VD_S249_E1-50


title: HS_M1_1_sample 2109


title: TSA_19 (2_C25)


title: HS_M1_1_sample 2110


title: HS_M1_1_sample 2108


title: MM_M1_1_sample 1398


title: TSA_18 (2_C24)


title: TSA_17 (2_C22)


title: SM-GE5VD_S246_E1-50


title: MM_M1_1_sample 1397


title: TSA_16 (2_C21)


title: HS_M1_1_sample 2107


title: HS_M1_1_sample 2106


title: SM-GE5VD_S242_E1-50


title: SM-GE5VD_S241_E1-50


title: TSA_15 (2_C20)


title: MM_M1_1_sample 1396


title: HS_M1_1_sample 2105


title: SM-GE5VD_S232_E1-50


title: TSA_13 (2_C18)


title: MM_M1_1_sample 1394


title: SM-GE5VD_S230_E1-50


title: TSA_14 (2_C19)


title: MM_M1_1_sample 1393


title: MM_M1_1_sample 1392


title: HS_M1_1_sample 2104


title: TSA_11 (2_C16)


title: MM_M1_1_sample 1395


title: MM_M1_1_sample 1391


title: SM-GE5VD_S229_E1-50


title: HS_M1_1_sample 2102


title: TSA_9 (2_C14)


title: TSA_12 (2_C17)


title: SM-GE66V_S097_E1-50

source_name: non-retroseq cells mapped to Car3 subclass

value: 100 days

value: GFP-positive

value: Car3 6


title: SM-GE5VD_S228_E1-50

value: left

value: SSs


title: HS_M1_1_sample 2100


title: TSA_10 (2_C15)


title: HS_M1_1_sample 2101


title: SM-GE5VD_S227_E1-50


title: MM_M1_1_sample 1390


title: HS_M1_1_sample 2103


title: TSA_8 (2_C13)


title: SM-GE5VD_S231_E1-50


title: TSA_7 (2_C11)


title: HS_M1_1_sample 2098


title: SM-GE66V_S072_E1-50

value: right


title: SM-GE66V_S071_E1-50


title: MM_M1_1_sample 1387


title: MM_M1_1_sample 1388


title: HS_M1_1_sample 2099


title: MM_M1_1_sample 1386


title: TSA_6 (2_C10)


title: MM_M1_1_sample 1389


title: TSA_4 (2_C05)


title: HS_M1_1_sample 2095


title: TSA_5 (2_C09)


title: MM_M1_1_sample 1385


title: MM_M1_1_sample 1384


title: SM-GE66V_S069_E1-50


title: SM-GE66V_S070_E1-50


title: MM_M1_1_sample 1383


title: HS_M1_1_sample 2092


title: SM-GE66V_S067_E1-50


title: HS_M1_1_sample 2096


title: TSA_3 (2_C03)


title: SM-GE66V_S068_E1-50

value: Car3 1


title: TSA_2 (2_C02)


title: SM-GE66V_S066_E1-50


title: HS_M1_1_sample 2097


title: HS_M1_1_sample 2093


title: MM_M1_1_sample 1381


title: SM-GE66V_S065_E1-50


title: HS_M1_1_sample 2091


title: DMSO_72 (1_C95)


title: HS_M1_1_sample 2090


title: TSA_1 (2_C01)


title: HS_M1_1_sample 2089


title: MM_M1_1_sample 1380


title: SM-GE66V_S063_E1-50


title: MM_M1_1_sample 1379


title: SM-GE66V_S064_E1-50


title: HS_M1_1_sample 2094


title: DMSO_71 (1_C94)


title: DMSO_70 (1_C92)


title: DMSO_69 (1_C89)


title: MM_M1_1_sample 1382


title: HS_M1_1_sample 2086


title: MM_M1_1_sample 1377


title: SM-GE66V_S061_E1-50


title: MM_M1_1_sample 1378


title: SM-GE66V_S062_E1-50


title: HS_M1_1_sample 2087


title: SM-GE66V_S059_E1-50


title: DMSO_68 (1_C87)


title: HS_M1_1_sample 2085


title: MM_M1_1_sample 1376


title: HS_M1_1_sample 2084


title: DMSO_65 (1_C84)


title: SM-GE66V_S060_E1-50


title: DMSO_66 (1_C85)


title: MM_M1_1_sample 1374


title: HS_M1_1_sample 2083


title: DMSO_67 (1_C86)


title: SM-GE66V_S057_E1-50


title: SM-GE66V_S058_E1-50


title: DMSO_64 (1_C83)


title: MM_M1_1_sample 1373


title: MM_M1_1_sample 1372


title: HS_M1_1_sample 2081


title: HS_M1_1_sample 2088


title: HS_M1_1_sample 2082


title: SM-GE66V_S055_E1-50

value: CTXsp


title: MM_M1_1_sample 1375


title: DMSO_63 (1_C81)


title: SM-GE66V_S054_E1-50


title: DMSO_62 (1_C80)


title: MM_M1_1_sample 1371


title: HS_M1_1_sample 2080


title: SM-GE66V_S053_E1-50


title: SM-GE66V_S052_E1-50


title: DMSO_61 (1_C79)


title: SM-GE66V_S051_E1-50


title: MM_M1_1_sample 1366


title: HS_M1_1_sample 2076


title: SM-GE66V_S049_E1-50


title: HS_M1_1_sample 2079


title: SM-GE66V_S056_E1-50


title: MM_M1_1_sample 1369


title: DMSO_59 (1_C77)


title: DMSO_58 (1_C76)


title: DMSO_60 (1_C78)


title: SM-GE66V_S050_E1-50


title: MM_M1_1_sample 1367


title: MM_M1_1_sample 1368


title: MM_M1_1_sample 1370


title: MM_M1_1_sample 1363


title: MM_M1_1_sample 1362


title: HS_M1_1_sample 2071


title: SM-GE66V_S048_E1-50


title: DMSO_54 (1_C72)


title: MM_M1_1_sample 1365


title: SM-GE66V_S045_E1-50


title: DMSO_55 (1_C73)


title: HS_M1_1_sample 2075


title: MM_M1_1_sample 1364


title: DMSO_56 (1_C74)


title: HS_M1_1_sample 2073


title: HS_M1_1_sample 2078


title: DMSO_57 (1_C75)


title: DMSO_52 (1_C69)


title: SM-GE66V_S047_E1-50


title: DMSO_53 (1_C70)


title: SM-GE66V_S044_E1-50


title: MM_M1_1_sample 1360


title: SM-GE66V_S046_E1-50


title: HS_M1_1_sample 2077


title: DMSO_50 (1_C67)


title: SM-GE66V_S042_E1-50


title: HS_M1_1_sample 2072


title: HS_M1_1_sample 2074


title: MM_M1_1_sample 1359


title: MM_M1_1_sample 1361


title: DMSO_49 (1_C66)


title: HS_M1_1_sample 2070


title: MM_M1_1_sample 1358


title: HS_M1_1_sample 2068


title: MM_M1_1_sample 1356


title: HS_M1_1_sample 2066


title: DMSO_47 (1_C63)


title: SM-GE66V_S030_E1-50


title: HS_M1_1_sample 2069


title: MM_M1_1_sample 1355


title: DMSO_51 (1_C68)


title: SM-GE66V_S029_E1-50


title: HS_M1_1_sample 2067


title: SM-GE66V_S032_E1-50


title: SM-GE66V_S028_E1-50


title: SM-GE66V_S041_E1-50


title: MM_M1_1_sample 1357


title: SM-GE66V_S031_E1-50


title: MM_M1_1_sample 1353


title: MM_M1_1_sample 1352


title: DMSO_43 (1_C59)


title: SM-GE66V_S026_E1-50


title: DMSO_44 (1_C60)


title: HS_M1_1_sample 2065


title: DMSO_42 (1_C58)


title: DMSO_46 (1_C62)


title: SM-GE66V_S024_E1-50


title: MM_M1_1_sample 1354


title: MM_M1_1_sample 1347


title: MM_M1_1_sample 1351


title: DMSO_45 (1_C61)


title: HS_M1_1_sample 2063


title: HS_M1_1_sample 2061


title: HS_M1_1_sample 2064


title: HS_M1_1_sample 2062


title: MM_M1_1_sample 1350


title: DMSO_48 (1_C65)


title: SM-GE66V_S027_E1-50


title: SM-GE66V_S020_E1-50


title: HS_M1_1_sample 2060


title: HS_M1_1_sample 2059


title: HS_M1_1_sample 2054


title: SM-GE66V_S022_E1-50


title: HS_M1_1_sample 2057


title: DMSO_41 (1_C57)


title: DMSO_40 (1_C55)


title: SM-GE66V_S021_E1-50


title: HS_M1_1_sample 2058


title: SM-GE66V_S025_E1-50


title: MM_M1_1_sample 1346


title: DMSO_34 (1_C46)


title: DMSO_38 (1_C53)


title: SM-GE66V_S017_E1-50


title: HS_M1_1_sample 2052


title: MM_M1_1_sample 1348


title: DMSO_39 (1_C54)


title: SM-GE66V_S023_E1-50


title: HS_M1_1_sample 2056


title: DMSO_36 (1_C51)


title: MM_M1_1_sample 1345


title: SM-GE66V_S019_E1-50


title: HS_M1_1_sample 2053


title: MM_M1_1_sample 1341


title: HS_M1_1_sample 2055


title: DMSO_33 (1_C44)


title: MM_M1_1_sample 1343


title: HS_M1_1_sample 2050


title: DMSO_37 (1_C52)


title: MM_M1_1_sample 1349


title: HS_M1_1_sample 2049


title: MM_M1_1_sample 1342


title: DMSO_35 (1_C48)


title: SM-GE66V_S018_E1-50


title: MM_M1_1_sample 1344


title: HS_M1_1_sample 2051


title: DMSO_32 (1_C43)


title: DMSO_30 (1_C41)


title: SM-GE66V_S014_E1-50


title: SM-GE66V_S016_E1-50


title: MM_M1_1_sample 1340


title: SM-GE66V_S013_E1-50


title: HS_M1_1_sample 2048


title: MM_M1_1_sample 1339


title: MM_M1_1_sample 1337


title: SM-GE66V_S012_E1-50


title: DMSO_28 (1_C37)


title: HS_M1_1_sample 2046


title: SM-GE66V_S015_E1-50


title: DMSO_29 (1_C39)


title: DMSO_26 (1_C34)


title: DMSO_27 (1_C36)


title: SM-GE66V_S011_E1-50


title: MM_M1_1_sample 1335


title: HS_M1_1_sample 2045


title: MM_M1_1_sample 1336


title: HS_M1_1_sample 2043


title: DMSO_24 (1_C32)


title: SM-GE66V_S009_E1-50


title: SM-GE66V_S010_E1-50


title: HS_M1_1_sample 2047


title: DMSO_25 (1_C33)


title: MM_M1_1_sample 1338


title: SM-GE66V_S008_E1-50


title: DMSO_31 (1_C42)


title: HS_M1_1_sample 2044


title: DMSO_23 (1_C31)


title: SM-GE66V_S007_E1-50


title: MM_M1_1_sample 1334


title: HS_M1_1_sample 2040


title: DMSO_22 (1_C30)


title: DMSO_21 (1_C29)


title: MM_M1_1_sample 1333


title: HS_M1_1_sample 2042


title: HS_M1_1_sample 2039


title: HS_M1_1_sample 2038


title: DMSO_20 (1_C28)


title: MM_M1_1_sample 1329


title: DMSO_19 (1_C26)


title: SM-GE66V_S006_E1-50


title: MM_M1_1_sample 1332


title: SM-GE66U_S176_E1-50


title: MM_M1_1_sample 1330


title: HS_M1_1_sample 2034


title: SM-GE66V_S002_E1-50


title: MM_M1_1_sample 1328


title: SM-GE66V_S004_E1-50


title: DMSO_18 (1_C24)


title: HS_M1_1_sample 2037


title: SM-GE66U_S174_E1-50


title: HS_M1_1_sample 2033


title: SM-GE66V_S003_E1-50


title: DMSO_14 (1_C17)


title: MM_M1_1_sample 1331


title: MM_M1_1_sample 1326


title: MM_M1_1_sample 1327


title: HS_M1_1_sample 2041


title: DMSO_17 (1_C23)


title: DMSO_13 (1_C16)


title: SM-GE66U_S175_E1-50


title: MM_M1_1_sample 1324


title: HS_M1_1_sample 2035


title: DMSO_15 (1_C19)


title: HS_M1_1_sample 2036


title: MM_M1_1_sample 1325


title: MM_M1_1_sample 1322


title: SM-GE66V_S001_E1-50


title: MM_M1_1_sample 1321


title: MM_M1_1_sample 1319


title: DMSO_12 (1_C14)


title: HS_M1_1_sample 2032


title: DMSO_16 (1_C21)


title: SM-GE66V_S005_E1-50


title: DMSO_10 (1_C11)


title: HS_M1_1_sample 2029


title: MM_M1_1_sample 1318


title: SM-GE66U_S173_E1-50


title: SM-GE66U_S172_E1-50


title: DMSO_9 (1_C10)


title: HS_M1_1_sample 2030


title: HS_M1_1_sample 2031


title: SM-GE66U_S169_E1-50


title: MM_M1_1_sample 1320


title: SM-GE66U_S170_E1-50


title: DMSO_7 (1_C08)


title: HS_M1_1_sample 2028


title: SM-GE66U_S171_E1-50


title: HS_M1_1_sample 2026


title: DMSO_11 (1_C12)


title: DMSO_8 (1_C09)


title: MM_M1_1_sample 1316


title: SM-GE66U_S167_E1-50


title: SM-GE66U_S166_E1-50


title: MM_M1_1_sample 1317


title: HS_M1_1_sample 2025


title: DMSO_6 (1_C07)


title: SM-GE66U_S165_E1-50


title: SM-GE66U_S168_E1-50


title: MM_M1_1_sample 1313


title: HS_M1_1_sample 2024


title: DMSO_5 (1_C05)


title: HS_M1_1_sample 2023


title: SM-GE66U_S164_E1-50


title: MM_M1_1_sample 1314


title: MM_M1_1_sample 1312


title: DMSO_4 (1_C04)


title: HS_M1_1_sample 2022


title: HS_M1_1_sample 2027


title: SM-GE66U_S163_E1-50


title: HS_M1_1_sample 2021


title: MM_M1_1_sample 1311


title: MM_M1_1_sample 1315


title: DMSO_3 (1_C03)


title: SM-GE66U_S162_E1-50


title: SM-GE66U_S160_E1-50


title: DMSO_1 (1_C01)


title: HS_M1_1_sample 2020


title: HS_M1_1_sample 2017


title: TSA_1000_B2_Rep_1

data_processing:
CellRanger v1.3.1 was used to demultiplex and prcoess to gene counts per cell using default settings
Genome_build: GRCh38
Supplementary_files_format_and_content: 3 filtered_gene_bs_matricies files per sample

extract_protocol:
Qiagen Rneasy PLUS Micro
10X Genomics recommended library construction protocol


title: MM_M1_1_sample 1307


title: HS_M1_1_sample 2019


title: MM_M1_1_sample 1310


title: MM_M1_1_sample 1308


title: DMSO_1000_A2_Rep_1


title: DMSO_2 (1_C02)


title: SM-GE66U_S157_E1-50


title: SM-GE66U_S159_E1-50


title: SM-GE66U_S158_E1-50


title: MM_M1_1_sample 1304


title: DMSO_1000_A3_Rep_2


title: SM-GE66U_S156_E1-50


title: MM_M1_1_sample 1305


title: HS_M1_1_sample 2015


title: MM_M1_1_sample 1303


title: SM-GE66U_S155_E1-50


title: TSA_1000_B3_Rep_2


title: MM_M1_1_sample 1306


title: HS_M1_1_sample 2016


title: HS_M1_1_sample 2018


title: SM-GE66U_S161_E1-50


title: MM_M1_1_sample 1309


title: SM-GE66U_S153_E1-50


title: COL9_DMSO2_S31_ROW37

extract_protocol:
Fluidigm C1 HT scRNAseq protocol, no offline RNA extraction performed
Fluidigm C1 HT scRNAseq library construction protocol


title: HS_M1_1_sample 2010


title: COL9_DMSO2_S31_ROW40


title: MM_M1_1_sample 1301


title: MM_M1_1_sample 1299


title: HS_M1_1_sample 2014


title: HS_M1_1_sample 2009


title: SM-GE66U_S151_E1-50


title: COL9_DMSO2_S31_ROW39


title: HS_M1_1_sample 2008


title: SM-GE66U_S154_E1-50


title: MM_M1_1_sample 1297


title: COL9_DMSO2_S31_ROW33


title: SM-GE66U_S148_E1-50


title: MM_M1_1_sample 1300


title: COL9_DMSO2_S31_ROW38


title: MM_M1_1_sample 1302


title: SM-GE66U_S152_E1-50


title: COL9_DMSO2_S31_ROW36


title: SM-GE66U_S149_E1-50


title: MM_M1_1_sample 1295


title: SM-GE66U_S147_E1-50


title: COL9_DMSO2_S31_ROW35


title: MM_M1_1_sample 1296


title: HS_M1_1_sample 2012


title: SM-GE66U_S150_E1-50


title: COL9_DMSO2_S31_ROW31


title: HS_M1_1_sample 2013


title: SM-GE66U_S146_E1-50


title: HS_M1_1_sample 2011


title: HS_M1_1_sample 2004


title: COL9_DMSO2_S31_ROW29


title: MM_M1_1_sample 1298


title: COL9_DMSO2_S31_ROW34


title: COL9_DMSO2_S31_ROW28


title: MM_M1_1_sample 1292


title: SM-GE66U_S144_E1-50


title: HS_M1_1_sample 2002


title: HS_M1_1_sample 2006


title: MM_M1_1_sample 1291


title: COL9_DMSO2_S31_ROW32


title: SM-GE66U_S145_E1-50


title: MM_M1_1_sample 1294


title: HS_M1_1_sample 2007


title: COL9_DMSO2_S31_ROW25


title: MM_M1_1_sample 1293


title: MM_M1_1_sample 1289


title: HS_M1_1_sample 1999


title: COL9_DMSO2_S31_ROW30


title: HS_M1_1_sample 2000


title: HS_M1_1_sample 2005


title: HS_M1_1_sample 2003


title: SM-GE66U_S139_E1-50


title: HS_M1_1_sample 2001


title: HS_M1_1_sample 1997


title: COL9_DMSO2_S31_ROW23


title: SM-GE66U_S142_E1-50


title: MM_M1_1_sample 1290


title: SM-GE66U_S140_E1-50


title: COL9_DMSO2_S31_ROW27


title: SM-GE66U_S143_E1-50


title: COL9_DMSO2_S31_ROW26


title: MM_M1_1_sample 1286


title: HS_M1_1_sample 1998


title: COL9_DMSO2_S31_ROW22


title: MM_M1_1_sample 1287


title: SM-GE66U_S141_E1-50


title: SM-GE66U_S138_E1-50


title: SM-GE66U_S137_E1-50


title: MM_M1_1_sample 1288


title: HS_M1_1_sample 1995


title: SM-GE66U_S136_E1-50


title: MM_M1_1_sample 1285


title: MM_M1_1_sample 1284


title: COL9_DMSO2_S31_ROW21


title: HS_M1_1_sample 1996


title: HS_M1_1_sample 1994


title: MM_M1_1_sample 1283


title: COL9_DMSO2_S31_ROW24


title: COL9_DMSO2_S31_ROW19


title: COL9_DMSO2_S31_ROW20


title: HS_M1_1_sample 1993


title: COL9_DMSO2_S31_ROW18


title: SM-GE66U_S133_E1-50


title: MM_M1_1_sample 1282


title: HS_M1_1_sample 1991


title: COL9_DMSO2_S31_ROW17


title: SM-GE66U_S134_E1-50


title: SM-GE66U_S132_E1-50


title: MM_M1_1_sample 1280


title: SM-GE66U_S131_E1-50


title: HS_M1_1_sample 1989


title: COL9_DMSO2_S31_ROW15


title: HS_M1_1_sample 1990


title: MM_M1_1_sample 1279


title: SM-GE66U_S130_E1-50


title: MM_M1_1_sample 1278


title: MM_M1_1_sample 1277


title: SM-GE66U_S129_E1-50


title: HS_M1_1_sample 1988


title: COL9_DMSO2_S31_ROW14


title: MM_M1_1_sample 1281


title: MM_M1_1_sample 1276


title: HS_M1_1_sample 1992


title: COL9_DMSO2_S31_ROW12


title: SM-GE66U_S118_E1-50


title: SM-GE66U_S119_E1-50


title: SM-GE66U_S117_E1-50


title: HS_M1_1_sample 1987


title: COL9_DMSO2_S31_ROW16


title: HS_M1_1_sample 1986


title: COL9_DMSO2_S31_ROW11


title: MM_M1_1_sample 1274


title: COL9_DMSO2_S31_ROW09


title: SM-GE66U_S120_E1-50


title: MM_M1_1_sample 1275


title: COL9_DMSO2_S31_ROW10


title: SM-GE66U_S116_E1-50


title: COL9_DMSO2_S31_ROW13


title: COL9_DMSO2_S31_ROW08


title: HS_M1_1_sample 1984


title: MM_M1_1_sample 1272


title: HS_M1_1_sample 1982


title: MM_M1_1_sample 1273


title: SM-GE66U_S113_E1-50


title: SM-GE66U_S115_E1-50


title: COL9_DMSO2_S31_ROW07


title: SM-GE66U_S114_E1-50


title: COL9_DMSO2_S31_ROW06


title: SM-GE66U_S112_E1-50


title: MM_M1_1_sample 1269


title: COL9_DMSO2_S31_ROW04


title: COL9_DMSO2_S31_ROW05


title: MM_M1_1_sample 1271


title: MM_M1_1_sample 1270


title: HS_M1_1_sample 1979


title: HS_M1_1_sample 1985


title: COL9_DMSO2_S31_ROW02


title: HS_M1_1_sample 1976


title: HS_M1_1_sample 1981


title: SM-GE66U_S111_E1-50


title: MM_M1_1_sample 1268


title: HS_M1_1_sample 1978


title: HS_M1_1_sample 1983


title: MM_M1_1_sample 1267


title: MM_M1_1_sample 1264


title: COL9_DMSO2_S31_ROW03


title: COL9_DMSO2_S31_ROW01


title: SM-GE66U_S107_E1-50


title: HS_M1_1_sample 1973


title: MM_M1_1_sample 1266


title: HS_M1_1_sample 1972


title: SM-GE66U_S106_E1-50


title: HS_M1_1_sample 1977


title: COL9_DMSO1_S9_ROW38


title: HS_M1_1_sample 1974


title: HS_M1_1_sample 1975


title: MM_M1_1_sample 1265


title: SM-GE66U_S110_E1-50


title: SM-GE66U_S108_E1-50


title: SM-GE66U_S105_E1-50


title: COL9_DMSO1_S9_ROW37


title: MM_M1_1_sample 1263


title: COL9_DMSO1_S9_ROW40


title: MM_M1_1_sample 1260


title: HS_M1_1_sample 1970


title: COL9_DMSO1_S9_ROW35


title: SM-GE66U_S109_E1-50


title: HS_M1_1_sample 1968


title: COL9_DMSO1_S9_ROW36


title: COL9_DMSO1_S9_ROW34


title: MM_M1_1_sample 1259


title: MM_M1_1_sample 1258


title: SM-GE66U_S101_E1-50


title: SM-GE66U_S103_E1-50


title: HS_M1_1_sample 1971


title: MM_M1_1_sample 1257


title: SM-GE66U_S102_E1-50


title: HS_M1_1_sample 1966


title: COL9_DMSO1_S9_ROW32


title: COL9_DMSO1_S9_ROW31


title: HS_M1_1_sample 1969


title: MM_M1_1_sample 1255


title: COL9_DMSO1_S9_ROW39


title: HS_M1_1_sample 1964


title: MM_M1_1_sample 1262


title: SM-GE66U_S100_E1-50


title: COL9_DMSO1_S9_ROW33


title: SM-GE66U_S095_E1-50

value: 99 days


title: MM_M1_1_sample 1261


title: SM-GE66U_S097_E1-50


title: HS_M1_1_sample 1963


title: SM-GE66U_S096_E1-50


title: SM-GE66U_S098_E1-50


title: SM-GE66U_S099_E1-50


title: MM_M1_1_sample 1256


title: HS_M1_1_sample 1965


title: HS_M1_1_sample 1967


title: SM-GE66U_S094_E1-50


title: HS_M1_1_sample 1962


title: MM_M1_1_sample 1254


title: MM_M1_1_sample 1252


title: COL9_DMSO1_S9_ROW30


title: COL9_DMSO1_S9_ROW28


title: MM_M1_1_sample 1251


title: HS_M1_1_sample 1961


title: COL9_DMSO1_S9_ROW27


title: SM-GE66U_S092_E1-50


title: HS_M1_1_sample 1960


title: HS_M1_1_sample 1959


title: MM_M1_1_sample 1250


title: MM_M1_1_sample 1253


title: SM-GE66U_S091_E1-50


title: MM_M1_1_sample 1249


title: COL9_DMSO1_S9_ROW26


title: COL9_DMSO1_S9_ROW25


title: COL9_DMSO1_S9_ROW29


title: HS_M1_1_sample 1957


title: MM_M1_1_sample 1248


title: COL9_DMSO1_S9_ROW24


title: SM-GE66U_S093_E1-50


title: MM_M1_1_sample 1247


title: SM-GE66U_S090_E1-50


title: COL9_DMSO1_S9_ROW23


title: HS_M1_1_sample 1958


title: SM-GE66U_S088_E1-50


title: HS_M1_1_sample 1956


title: COL9_DMSO1_S9_ROW22


title: MM_M1_1_sample 1246


title: MM_M1_1_sample 1245


title: HS_M1_1_sample 1955


title: COL9_DMSO1_S9_ROW21


title: SM-GE66U_S087_E1-50


title: SM-GE66U_S086_E1-50


title: HS_M1_1_sample 1954


title: COL9_DMSO1_S9_ROW20


title: HS_M1_1_sample 1953


title: MM_M1_1_sample 1244


title: COL9_DMSO1_S9_ROW18


title: SM-GE66U_S089_E1-50


title: SM-GE66U_S082_E1-50


title: HS_M1_1_sample 1952


title: COL9_DMSO1_S9_ROW19


title: MM_M1_1_sample 1243


title: SM-GE66U_S081_E1-50


title: MM_M1_1_sample 1242


title: HS_M1_1_sample 1951


title: SM-GE66U_S083_E1-50


title: SM-GE66U_S080_E1-50


title: COL9_DMSO1_S9_ROW15


title: HS_M1_1_sample 1950


title: HS_M1_1_sample 1949


title: COL9_DMSO1_S9_ROW16


title: MM_M1_1_sample 1240


title: MM_M1_1_sample 1239


title: COL9_DMSO1_S9_ROW14


title: MM_M1_1_sample 1241


title: MM_M1_1_sample 1238


title: SM-GE66U_S079_E1-50


title: COL9_DMSO1_S9_ROW17


title: HS_M1_1_sample 1947


title: SM-GE66U_S084_E1-50


title: SM-GE66U_S078_E1-50


title: HS_M1_1_sample 1946


title: COL9_DMSO1_S9_ROW13


title: MM_M1_1_sample 1236


title: COL9_DMSO1_S9_ROW12


title: HS_M1_1_sample 1945


title: MM_M1_1_sample 1237


title: COL9_DMSO1_S9_ROW10


title: HS_M1_1_sample 1948


title: MM_M1_1_sample 1234


title: COL9_DMSO1_S9_ROW08


title: COL9_DMSO1_S9_ROW09


title: SM-GE66U_S074_E1-50


title: MM_M1_1_sample 1235


title: COL9_DMSO1_S9_ROW11


title: MM_M1_1_sample 1231


title: HS_M1_1_sample 1943


title: SM-GE66U_S076_E1-50


title: SM-GE66U_S077_E1-50


title: SM-GE66U_S072_E1-50


title: MM_M1_1_sample 1233


title: SM-GE66U_S073_E1-50


title: MM_M1_1_sample 1232


title: HS_M1_1_sample 1941


title: HS_M1_1_sample 1940


title: MM_M1_1_sample 1230


title: SM-GE66U_S075_E1-50


title: COL9_DMSO1_S9_ROW06


title: HS_M1_1_sample 1939


title: HS_M1_1_sample 1944


title: COL9_DMSO1_S9_ROW07


title: SM-GE66U_S068_E1-50


title: SM-GE66U_S070_E1-50


title: MM_M1_1_sample 1228


title: COL9_DMSO1_S9_ROW04


title: COL9_DMSO1_S9_ROW05


title: SM-GE66U_S069_E1-50


title: HS_M1_1_sample 1938


title: HS_M1_1_sample 1937


title: HS_M1_1_sample 1936


title: MM_M1_1_sample 1226


title: HS_M1_1_sample 1934


title: MM_M1_1_sample 1229


title: SM-GE66U_S064_E1-50


title: SM-GE66U_S066_E1-50


title: HS_M1_1_sample 1942


title: SM-GE66U_S067_E1-50


title: MM_M1_1_sample 1227


title: COL9_DMSO1_S9_ROW02


title: SM-GE66U_S063_E1-50


title: HS_M1_1_sample 1935


title: COL9_DMSO1_S9_ROW03


title: COL9_DMSO1_S9_ROW01


title: COL8_DMSO2_S30_ROW39


title: MM_M1_1_sample 1225


title: COL8_DMSO2_S30_ROW40


title: HS_M1_1_sample 1933


title: MM_M1_1_sample 1223


title: MM_M1_1_sample 1222


title: SM-GE66U_S065_E1-50


title: SM-GE66U_S061_E1-50


title: MM_M1_1_sample 1221


title: COL8_DMSO2_S30_ROW38


title: HS_M1_1_sample 1931


title: SM-GE66U_S060_E1-50


title: SM-GE66U_S062_E1-50


title: HS_M1_1_sample 1929


title: HS_M1_1_sample 1928


title: HS_M1_1_sample 1932


title: MM_M1_1_sample 1218


title: MM_M1_1_sample 1219


title: COL8_DMSO2_S30_ROW35


title: SM-GE66U_S058_E1-50


title: COL8_DMSO2_S30_ROW34


title: MM_M1_1_sample 1224


title: COL8_DMSO2_S30_ROW37


title: COL8_DMSO2_S30_ROW36


title: HS_M1_1_sample 1930


title: HS_M1_1_sample 1926


title: MM_M1_1_sample 1220


title: SM-GE66U_S059_E1-50


title: HS_M1_1_sample 1927


title: MM_M1_1_sample 1217


title: COL8_DMSO2_S30_ROW33


title: COL8_DMSO2_S30_ROW32


title: MM_M1_1_sample 1215


title: SM-GE66U_S055_E1-50


title: HS_M1_1_sample 1924


title: COL8_DMSO2_S30_ROW30


title: SM-GE66U_S054_E1-50


title: SM-GE66U_S052_E1-50


title: COL8_DMSO2_S30_ROW29


title: MM_M1_1_sample 1212


title: HS_M1_1_sample 1923


title: COL8_DMSO2_S30_ROW31


title: SM-GE66U_S050_E1-50


title: COL8_DMSO2_S30_ROW27


title: SM-GE66U_S056_E1-50


title: MM_M1_1_sample 1216


title: SM-GE66U_S057_E1-50


title: HS_M1_1_sample 1925


title: SM-GE66U_S049_E1-50


title: HS_M1_1_sample 1921


title: MM_M1_1_sample 1213


title: MM_M1_1_sample 1211


title: HS_M1_1_sample 1922


title: SM-GE66U_S051_E1-50


title: COL8_DMSO2_S30_ROW28


title: HS_M1_1_sample 1919


title: SM-GE66U_S048_E1-50

value: 98 days


title: HS_M1_1_sample 1920


title: COL8_DMSO2_S30_ROW26


title: MM_M1_1_sample 1210


title: MM_M1_1_sample 1214


title: MM_M1_1_sample 1209


title: COL8_DMSO2_S30_ROW25


title: SM-GE66U_S047_E1-50


title: HS_M1_1_sample 1918


title: COL8_DMSO2_S30_ROW24


title: MM_M1_1_sample 1208


title: HS_M1_1_sample 1917


title: SM-GE66U_S046_E1-50

value: Car3 5


title: MM_M1_1_sample 1207

value: M


title: COL8_DMSO2_S30_ROW23

value: Invasive Ductal Carcinoma


title: HS_M1_1_sample 1916


title: SM-GE66U_S045_E1-50


title: MM_M1_1_sample 1206

value: brain


title: COL8_DMSO2_S30_ROW22


title: MM_M1_1_sample 1205


title: HS_M1_1_sample 1914

value: Brain


title: COL8_DMSO2_S30_ROW21


title: SM-GE66U_S044_E1-50

value: F


title: HS_M1_1_sample 1913


title: SM-GE66U_S041_E1-50


title: HS_M1_1_sample 1912


title: SM-GE66U_S043_E1-50


title: HS_M1_1_sample 1915


title: MM_M1_1_sample 1203


title: COL8_DMSO2_S30_ROW19


title: COL8_DMSO2_S30_ROW18


title: HS_M1_1_sample 1911


title: MM_M1_1_sample 1202


title: COL8_DMSO2_S30_ROW20


title: COL8_DMSO2_S30_ROW17


title: MM_M1_1_sample 1201


title: HS_M1_1_sample 1910


title: MM_M1_1_sample 1200


title: MM_M1_1_sample 1204


title: SM-GE66U_S037_E1-50


title: SM-GE66U_S040_E1-50


title: COL8_DMSO2_S30_ROW15


title: COL8_DMSO2_S30_ROW14


title: SM-GE66U_S036_E1-50


title: MM_M1_1_sample 1198


title: HS_M1_1_sample 1907


title: SM-GE66U_S035_E1-50


title: HS_M1_1_sample 1908


title: SM-GE66U_S039_E1-50


title: MM_M1_1_sample 1197


title: COL8_DMSO2_S30_ROW12


title: COL8_DMSO2_S30_ROW13


title: MM_M1_1_sample 1196


title: HS_M1_1_sample 1905


title: HS_M1_1_sample 1906


title: SM-GE66U_S034_E1-50


title: SM-GE66U_S038_E1-50


title: HS_M1_1_sample 1904


title: COL8_DMSO2_S30_ROW16


title: SM-GE66U_S033_E1-50


title: COL8_DMSO2_S30_ROW11


title: MM_M1_1_sample 1199


title: MM_M1_1_sample 1194


title: HS_M1_1_sample 1909


title: COL8_DMSO2_S30_ROW10


title: SM-GE66T_S192_E1-50


title: SM-GE66T_S191_E1-50


title: SM-GE66T_S190_E1-50


title: MM_M1_1_sample 1195


title: COL8_DMSO2_S30_ROW07


title: HS_M1_1_sample 1902


title: MM_M1_1_sample 1193


title: HS_M1_1_sample 1901


title: COL8_DMSO2_S30_ROW08


title: COL8_DMSO2_S30_ROW09


title: HS_M1_1_sample 1899


title: SM-GE66T_S188_E1-50


title: SM-GE66T_S189_E1-50


title: MM_M1_1_sample 1192


title: HS_M1_1_sample 1903


title: COL8_DMSO2_S30_ROW06


title: HS_M1_1_sample 1900


title: COL8_DMSO2_S30_ROW05


title: HS_M1_1_sample 1898


title: SM-GE66T_S187_E1-50


title: SM-GE66T_S186_E1-50


title: MM_M1_1_sample 1189


title: SM-GE66T_S185_E1-50


title: MM_M1_1_sample 1188


title: HS_M1_1_sample 1897


title: COL8_DMSO2_S30_ROW03


title: MM_M1_1_sample 1187


title: MM_M1_1_sample 1191


title: HS_M1_1_sample 1896


title: MM_M1_1_sample 1186


title: MM_M1_1_sample 1190


title: COL8_DMSO2_S30_ROW02


title: SM-GE66T_S184_E1-50


title: HS_M1_1_sample 1895


title: COL8_DMSO2_S30_ROW04


title: COL8_DMSO2_S30_ROW01


title: MM_M1_1_sample 1185


title: COL8_DMSO1_S8_ROW40


title: HS_M1_1_sample 1894


title: HS_M1_1_sample 1893


title: SM-GE66T_S181_E1-50


title: MM_M1_1_sample 1184


title: SM-GE66T_S180_E1-50


title: SM-GE66T_S179_E1-50


title: COL8_DMSO1_S8_ROW38


title: MM_M1_1_sample 1183


title: SM-GE66T_S183_E1-50


title: HS_M1_1_sample 1891


title: HS_M1_1_sample 1892


title: SM-GE66T_S178_E1-50


title: COL8_DMSO1_S8_ROW39


title: COL8_DMSO1_S8_ROW37


title: MM_M1_1_sample 1180


title: HS_M1_1_sample 1890


title: MM_M1_1_sample 1179


title: MM_M1_1_sample 1181


title: SM-GE66T_S177_E1-50


title: COL8_DMSO1_S8_ROW36


title: MM_M1_1_sample 1182


title: COL8_DMSO1_S8_ROW35


title: HS_M1_1_sample 1888


title: MM_M1_1_sample 1178


title: COL8_DMSO1_S8_ROW33


title: HS_M1_1_sample 1889


title: SM-GE66T_S175_E1-50


title: HS_M1_1_sample 1887


title: SM-GE66T_S174_E1-50


title: MM_M1_1_sample 1177


title: HS_M1_1_sample 1886


title: HS_M1_1_sample 1885


title: SM-GE66T_S172_E1-50


title: MM_M1_1_sample 1176


title: COL8_DMSO1_S8_ROW32


title: SM-GE66T_S171_E1-50


title: MM_M1_1_sample 1175


title: COL8_DMSO1_S8_ROW31


title: COL8_DMSO1_S8_ROW30


title: SM-GE66T_S173_E1-50


title: HS_M1_1_sample 1884


title: MM_M1_1_sample 1174


title: COL8_DMSO1_S8_ROW34


title: SM-GE66T_S170_E1-50


title: HS_M1_1_sample 1883


title: MM_M1_1_sample 1173


title: SM-GE66T_S168_E1-50


title: COL8_DMSO1_S8_ROW29


title: HS_M1_1_sample 1881


title: COL8_DMSO1_S8_ROW28


title: MM_M1_1_sample 1172


title: SM-GE66T_S167_E1-50


title: COL8_DMSO1_S8_ROW27


title: SM-GE66T_S169_E1-50


title: HS_M1_1_sample 1880


title: MM_M1_1_sample 1170


title: MM_M1_1_sample 1171


title: COL8_DMSO1_S8_ROW25


title: SM-GE66T_S166_E1-50


title: HS_M1_1_sample 1879


title: COL8_DMSO1_S8_ROW26


title: SM-GE66T_S164_E1-50

value: Car3 7


title: MM_M1_1_sample 1169


title: MM_M1_1_sample 1168


title: COL8_DMSO1_S8_ROW24


title: HS_M1_1_sample 1878


title: HS_M1_1_sample 1876


title: HS_M1_1_sample 1877


title: SM-GE66T_S163_E1-50


title: SM-GE66T_S162_E1-50


title: COL8_DMSO1_S8_ROW23


title: MM_M1_1_sample 1166


title: HS_M1_1_sample 1882


title: MM_M1_1_sample 1165


title: COL8_DMSO1_S8_ROW22


title: HS_M1_1_sample 1875


title: HS_M1_1_sample 1874


title: MM_M1_1_sample 1167


title: SM-GE66T_S161_E1-50


title: COL8_DMSO1_S8_ROW21


title: SM-GE66T_S160_E1-50


title: MM_M1_1_sample 1164


title: SM-GE66T_S158_E1-50


title: COL8_DMSO1_S8_ROW20


title: HS_M1_1_sample 1873


title: SM-GE66T_S159_E1-50


title: MM_M1_1_sample 1162


title: COL8_DMSO1_S8_ROW19


title: MM_M1_1_sample 1161


title: COL8_DMSO1_S8_ROW18


title: COL8_DMSO1_S8_ROW17


title: HS_M1_1_sample 1871


title: MM_M1_1_sample 1163


title: MM_M1_1_sample 1160


title: COL8_DMSO1_S8_ROW16


title: SM-GE66T_S157_E1-50


title: COL8_DMSO1_S8_ROW14


title: HS_M1_1_sample 1869


title: MM_M1_1_sample 1159


title: MM_M1_1_sample 1157


title: SM-GE66T_S156_E1-50


title: HS_M1_1_sample 1870


title: HS_M1_1_sample 1868


title: SM-GE66T_S154_E1-50


title: SM-GE66T_S152_E1-50


title: COL8_DMSO1_S8_ROW15


title: SM-GE66T_S155_E1-50


title: SM-GE66T_S153_E1-50


title: MM_M1_1_sample 1156


title: SM-GE66T_S165_E1-50


title: COL8_DMSO1_S8_ROW13


title: HS_M1_1_sample 1866


title: HS_M1_1_sample 1872


title: HS_M1_1_sample 1864


title: COL8_DMSO1_S8_ROW11


title: MM_M1_1_sample 1155


title: MM_M1_1_sample 1158


title: COL8_DMSO1_S8_ROW12


title: HS_M1_1_sample 1863


title: SM-GE66T_S149_E1-50


title: SM-GE66T_S151_E1-50


title: MM_M1_1_sample 1154


title: HS_M1_1_sample 1862


title: HS_M1_1_sample 1867


title: MM_M1_1_sample 1153


title: MM_M1_1_sample 1151


title: COL8_DMSO1_S8_ROW09


title: SM-GE66T_S146_E1-50


title: SM-GE66T_S147_E1-50


title: COL8_DMSO1_S8_ROW08


title: HS_M1_1_sample 1865


title: COL8_DMSO1_S8_ROW10


title: MM_M1_1_sample 1152


title: COL8_DMSO1_S8_ROW06


title: HS_M1_1_sample 1860


title: COL8_DMSO1_S8_ROW05


title: HS_M1_1_sample 1859


title: SM-GE66T_S145_E1-50

value: Car3 4


title: COL8_DMSO1_S8_ROW07


title: SM-GE66T_S143_E1-50

value: GFP-positive


title: MM_M1_1_sample 1150


title: HS_M1_1_sample 1858


title: SM-GE66T_S144_E1-50

value: Car3 6


title: SM-GE66T_S150_E1-50

value: left


title: HS_M1_1_sample 1861


title: COL8_DMSO1_S8_ROW03


title: MM_M1_1_sample 1148


title: MM_M1_1_sample 1149


title: MM_M1_1_sample 1147


title: SM-GE66T_S142_E1-50


title: COL8_DMSO1_S8_ROW02


title: SM-GE66T_S141_E1-50


title: COL8_DMSO1_S8_ROW04


title: SM-GE66T_S140_E1-50


title: SM-GE66T_S139_E1-50


title: HS_M1_1_sample 1857


title: MM_M1_1_sample 1145


title: HS_M1_1_sample 1854


title: HS_M1_1_sample 1855


title: SM-GE66T_S138_E1-50


title: HS_M1_1_sample 1856


title: COL7_DMSO2_S29_ROW39