title: HS_M1_1_sample 1046


title: MM_M1_2_sample 10

status: Public on Oct 06 2021

type: SRA

city: La Jolla

first: Joseph

middle: R

last: Ecker

state: CA

address: 10010 North Torrey Pines Road

department: Genomic Analysis Laboratory

country: USA

institute: HHMI-Salk-Institute

library_source: genomic

data_processing:
Library strategy: snmC-seq2
Reads trimed with Cutadapt for adapters and low quality bases (Phred score >= 20)
The resulting files are mapped to in-silico bisulfite converted reference genome using Bismark.
The raw BAM file will be filtered using samtools to filter reads by MAPQ > 10 and use Picard to remove PCR duplicates
Tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls will be generated with in-house developing package using the filtered BAM files
Genome_build: ASM275486v1
Supplementary_files_format_and_content: tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls. Columns are: 1. Chromosome, 2. Position, 3. Strand, 4. Cytosin Context, 5. methylated base call, 6. total mapped base call, 7. not used, place holder column

molecule: genomic DNA

organism: Callithrix jacchus

extract_protocol:
M1 regions of human/marmoset brains were dissected.
Library prepared following protocol discribed in Luo, Chongyuan, Angeline Rivkin, Jingtian Zhou, Justin P. Sandoval, Laurie Kurihara, Jacinta Lucero, Rosa Castanon, et al. 2018. “Robust Single-Cell DNA Methylome Profiling with snmC-seq2.” Nature Communications 9 (1): 3824.

tag: tissue

value: brain

tag: brain region

tag: gender

value: M


title: MM_M1_2_sample 4


title: Chip91484_r51_c57_Treated

city: Rochester

first: Jason

last: Myers

state: NY

address: 601 Elmwood Ave.

institute: University of Rochester

description: Chip91484_r51_c57_Treated_GTTCAGAACTG-AAGAGGCA

library_source: transcriptomic

data_processing:
Data Formatting - bcltofastq-2.19.0
Data Cleaning - Trimmomatic-0.36, TRAILING:13 LEADING:13 ILLUMINACLIP:adapters.fasta:2:30:10 SLIDINGWINDOW:4:20 MINLEN:15
Genome Alignment - STAR_2.5.2b, --twopassMode Basic --runMode alignReads --genomeDir ${GENOME} --readFilesIn ${SAMPLE} --outSAMtype BAM SortedByCoordinate --outSAMstrandField intronMotif --outFilterIntronMotifs RemoveNoncanonical
Read Quantification1 - subread-1.5.0p3, featurecounts, -s 2 -t exon -g gene_name
Genome_build: GRCh38 + gencode25
Supplementary_files_format_and_content: tab-delimited text file includes raw count values for each cell

molecule: total RNA

organism: Homo sapiens

source_name: 40 year old female

extract_protocol:
Wafergen iCell8 scRNAseq protocol, no offline RNA isolation performed
Wafergen iCell8 scRNAseq library construction protocol

tag: cell line

tag: cell type

value: Invasive Ductal Carcinoma


title: Chip91484_r51_c6_Treated

description: Chip91484_r51_c6_Treated_GTTCCAGGCTT-AAGAGGCA


title: Chip91484_r52_c36_Untreated

description: Chip91484_r52_c36_Untreated_GTCCGTTGCCG-AAGAGGCA


title: Chip91484_r51_c44_Untreated

description: Chip91484_r51_c44_Untreated_GGTTGGTCCGT-AAGAGGCA


title: HS_M1_1_sample 1037

data_processing:
Library strategy: snmC-seq2
Reads trimed with Cutadapt for adapters and low quality bases (Phred score >= 20)
The resulting files are mapped to in-silico bisulfite converted reference genome using Bismark.
The raw BAM file will be filtered using samtools to filter reads by MAPQ > 10 and use Picard to remove PCR duplicates
Tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls will be generated with in-house developing package using the filtered BAM files
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls. Columns are: 1. Chromosome, 2. Position, 3. Strand, 4. Cytosin Context, 5. methylated base call, 6. total mapped base call, 7. not used, place holder column

value: Brain


title: HS_M1_1_sample 1043


title: Chip91484_r52_c63_Untreated

description: Chip91484_r52_c63_Untreated_GTAAGCGACGA-AAGAGGCA


title: MM_M1_2_sample 3


title: HS_M1_1_sample 1041


title: MM_M1_2_sample 2


title: Chip91484_r51_c37_Untreated

description: Chip91484_r51_c37_Untreated_GGTTGGTATAT-AAGAGGCA


title: MM_M1_2_sample 8


title: MM_M1_2_sample 1


title: MM_M1_2_sample 7


title: Chip91484_r52_c16_Untreated

description: Chip91484_r52_c16_Untreated_GTAATTGCTCT-AAGAGGCA


title: Chip91484_r52_c10_Treated

description: Chip91484_r52_c10_Treated_GTTACCTGGAT-AAGAGGCA


title: Chip91484_r51_c68_Untreated

description: Chip91484_r51_c68_Untreated_GTATTGCAGAC-AAGAGGCA


title: HS_M1_1_sample 1034


title: MM_M1_2_sample 11


title: HS_M1_1_sample 1033


title: Chip91484_r51_c60_Untreated

description: Chip91484_r51_c60_Untreated_GTATTATAGCG-AAGAGGCA


title: Chip91484_r51_c2_Treated

description: Chip91484_r51_c2_Treated_GTTCCGGTTCC-AAGAGGCA


title: HS_M1_1_sample 1039


title: MM_M1_2_sample 5


title: HS_M1_1_sample 1032


title: Chip91484_r51_c31_Treated

description: Chip91484_r51_c31_Treated_GTTAACGTTCC-AAGAGGCA


title: HS_M1_1_sample 1038


title: Chip91484_r51_c43_Untreated

description: Chip91484_r51_c43_Untreated_GGTTGGTCATA-AAGAGGCA


title: Chip91484_r50_c66_Untreated

description: Chip91484_r50_c66_Untreated_GGTTCTGACCT-AAGAGGCA


title: HS_M1_1_sample 1031


title: Chip91484_r51_c38_Untreated

description: Chip91484_r51_c38_Untreated_GTAACGACTCG-AAGAGGCA


title: Chip91484_r50_c64_Untreated

description: Chip91484_r50_c64_Untreated_GGTTCGCGGAC-AAGAGGCA


title: MM_M1_1_sample 3058


title: MM_M1_2_sample 0


title: Chip91484_r50_c6_Treated

description: Chip91484_r50_c6_Treated_GTCTTCGGCGC-AAGAGGCA


title: MM_M1_1_sample 3057


title: HS_M1_1_sample 1035


title: HS_M1_1_sample 1029


title: Chip91484_r51_c30_Treated

description: Chip91484_r51_c30_Treated_GTCTTGACGCT-AAGAGGCA


title: MM_M1_1_sample 3056


title: Chip91484_r50_c9_Treated

description: Chip91484_r50_c9_Treated_GTCTGCGCTAT-AAGAGGCA


title: Chip91484_r51_c29_Treated

description: Chip91484_r51_c29_Treated_GTCTTCGTATA-AAGAGGCA


title: Chip91484_r50_c44_Untreated

description: Chip91484_r50_c44_Untreated_GTATCTTGCGG-AAGAGGCA


title: MM_M1_1_sample 3060


title: Chip91484_r50_c69_Untreated

description: Chip91484_r50_c69_Untreated_GGTTCGACCAA-AAGAGGCA


title: MM_M1_1_sample 3055


title: Chip91484_r51_c21_Untreated

description: Chip91484_r51_c21_Untreated_GTATGCTGGCC-AAGAGGCA


title: MM_M1_1_sample 3053


title: HS_M1_1_sample 1026


title: MM_M1_1_sample 3054


title: Chip91484_r50_c36_Untreated

description: Chip91484_r50_c36_Untreated_GTATATACCGT-AAGAGGCA


title: HS_M1_1_sample 1036


title: Chip91484_r50_c3_Treated

description: Chip91484_r50_c3_Treated_GTCTGCGTTCC-AAGAGGCA


title: MM_M1_1_sample 3059


title: Chip91484_r50_c62_Untreated

description: Chip91484_r50_c62_Untreated_GGTTGAAGTCG-AAGAGGCA


title: Chip91484_r50_c56_Treated

description: Chip91484_r50_c56_Treated_GTCTGCAACGC-AAGAGGCA


title: Chip91484_r50_c55_Treated

description: Chip91484_r50_c55_Treated_GTCTGATCGCT-AAGAGGCA


title: Chip91484_r50_c50_Treated

description: Chip91484_r50_c50_Treated_GTCTGCGATGA-AAGAGGCA


title: Chip91484_r50_c54_Treated

description: Chip91484_r50_c54_Treated_GTCTCGTCAGA-AAGAGGCA


title: Chip91484_r50_c39_Untreated

description: Chip91484_r50_c39_Untreated_GTAGTTCTGCC-AAGAGGCA


title: HS_M1_1_sample 1027


title: HS_M1_1_sample 1030


title: Chip91484_r50_c52_Treated

description: Chip91484_r50_c52_Treated_GTCTAACCTTA-AAGAGGCA


title: HS_M1_1_sample 1028


title: Chip91484_r50_c13_Untreated

description: Chip91484_r50_c13_Untreated_GGTTGGAATCA-AAGAGGCA


title: HS_M1_1_sample 1024


title: Chip91484_r50_c0_Treated

description: Chip91484_r50_c0_Treated_GTCTTCAGTCA-AAGAGGCA


title: Chip91484_r50_c14_Untreated

description: Chip91484_r50_c14_Untreated_GGTTGGTAACG-AAGAGGCA


title: Chip91484_r5_c57_Treated

description: Chip91484_r5_c57_Treated_AACGGCAGGAG-AAGAGGCA


title: MM_M1_1_sample 3052


title: Chip91484_r50_c20_Untreated

description: Chip91484_r50_c20_Untreated_GGTTGGCTTGG-AAGAGGCA


title: HS_M1_1_sample 1025


title: HS_M1_1_sample 1022


title: Chip91484_r5_c41_Untreated

description: Chip91484_r5_c41_Untreated_AACGTACCTGA-AAGAGGCA


title: HS_M1_1_sample 1021


title: MM_M1_1_sample 3049


title: MM_M1_1_sample 3051


title: Chip91484_r5_c40_Untreated

description: Chip91484_r5_c40_Untreated_AACGGTTCTCC-AAGAGGCA


title: Chip91484_r5_c54_Treated

description: Chip91484_r5_c54_Treated_AACGGCTGACG-AAGAGGCA


title: HS_M1_1_sample 1023


title: MM_M1_1_sample 3050


title: MM_M1_1_sample 3047


title: Chip91484_r49_c56_Treated

description: Chip91484_r49_c56_Treated_GTTATATGCAA-AAGAGGCA


title: MM_M1_1_sample 3046


title: Chip91484_r5_c25_Treated

description: Chip91484_r5_c25_Treated_AACTTATTGCA-AAGAGGCA


title: Chip91484_r49_c65_Untreated

description: Chip91484_r49_c65_Untreated_GTAGGCGCCTT-AAGAGGCA


title: HS_M1_1_sample 1017


title: HS_M1_1_sample 1018


title: Chip91484_r49_c52_Treated

description: Chip91484_r49_c52_Treated_GTTAGCTGCGC-AAGAGGCA


title: MM_M1_1_sample 3048


title: MM_M1_1_sample 3045


title: Chip91484_r49_c41_Untreated

description: Chip91484_r49_c41_Untreated_GGTTCGTACCA-AAGAGGCA


title: Chip91484_r5_c36_Untreated

description: Chip91484_r5_c36_Untreated_AACGTACTACG-AAGAGGCA


title: Chip91484_r49_c48_Treated

description: Chip91484_r49_c48_Treated_GTTAGTTCCTG-AAGAGGCA


title: Chip91484_r49_c35_Treated

description: Chip91484_r49_c35_Treated_GTCTATGAAGG-AAGAGGCA


title: HS_M1_1_sample 1015


title: MM_M1_1_sample 3042


title: MM_M1_1_sample 3041


title: HS_M1_1_sample 1020


title: HS_M1_1_sample 1019


title: Chip91484_r5_c1_Treated

description: Chip91484_r5_c1_Treated_AAGACCAGAAG-AAGAGGCA


title: HS_M1_1_sample 1013


title: Chip91484_r49_c67_Untreated

description: Chip91484_r49_c67_Untreated_GTAGTATTCCG-AAGAGGCA


title: Chip91484_r49_c55_Treated

description: Chip91484_r49_c55_Treated_GTTATATCGGT-AAGAGGCA


title: MM_M1_1_sample 3044


title: HS_M1_1_sample 1016


title: Chip91484_r49_c44_Untreated

description: Chip91484_r49_c44_Untreated_GGTTCTGGTTG-AAGAGGCA


title: Chip91484_r49_c11_Treated

description: Chip91484_r49_c11_Treated_GTTATGCGGCA-AAGAGGCA


title: MM_M1_1_sample 3039


title: HS_M1_1_sample 1011


title: MM_M1_1_sample 3038


title: HS_M1_1_sample 1014


title: Chip91484_r49_c4_Treated

description: Chip91484_r49_c4_Treated_GTTATCGAGAT-AAGAGGCA


title: HS_M1_1_sample 1010


title: MM_M1_1_sample 3037


title: MM_M1_1_sample 3040


title: Chip91484_r48_c49_Treated

description: Chip91484_r48_c49_Treated_GTCGGTTATAC-AAGAGGCA


title: HS_M1_1_sample 1012


title: Chip91484_r49_c30_Treated

description: Chip91484_r49_c30_Treated_GTCTATGGCAA-AAGAGGCA


title: Chip91484_r49_c37_Untreated

description: Chip91484_r49_c37_Untreated_GGTTCTGCAGC-AAGAGGCA


title: Chip91484_r48_c48_Treated

description: Chip91484_r48_c48_Treated_GTCGGTAGGAG-AAGAGGCA


title: BMSCs uninduced 0d rep3

type: RNA

city: BEIJING

first: YU

last: JIANG

address: 56 Nanlishi Road

country: China

institute: Beijing Children's Hospital

description: Super enhancer lncRNAs expression after chondrogenic induction 0 days of BMSCs

hyb_protocol: Array hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol (Agilent Technology) with minor modifications. 1 μg of each labeled cRNA was fragmented by adding 5 μl 10 × Blocking Agent and 1 μl of 25 × Fragmentation Buffer, then heated the mixture at 60°C for 30 min, finally 25 μl 2 × GE Hybridization buffer was added to dilute the labeled cRNA. 50 μl of hybridization solution was dispensed into the gasket slide and assembled to the LncRNA expression microarray slide. The slides were incubated for 17 hours at 65°C in an Agilent Hybridization Oven. The hybridized arrays were washed, fixed and scanned with using the Agilent DNA Microarray Scanner (part number G2505C).

scan_protocol: The array were scanned immediately after washing and fixing with the Agilent DNA Microarray Scanner (part number G2505C) using one color scan. (Scan Area 61x21.6 mm, Scan resolution 5um, Dye channel is set to Green and Green PMT is set 10% to 100%)

data_processing: Agilent Feature Extraction software (version 11.0.1.1) was used to analyze acquired array images. Quantile normalization and subsequent data processing were performed with using the GeneSpring GX v12.1 software package (Agilent Technologies)

source_name: bone marrow mesenchymal stem cells

label_protocol: Sample labeling was performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol (Agilent Technology) with minor modifications. Briefly, mRNA was purified from total RNA after removal of rRNA (mRNA-ONLY™ Eukaryotic mRNA Isolation Kit, Epicentre). Then, each sample was amplified and transcribed into fluorescent cRNA along the entire length of the transcripts without 3' bias utilizing a random priming method (Arraystar Flash RNA Labeling Kit, Arraystar). The labeled cRNAs were purified by RNeasy Mini Kit (Qiagen). The concentration and specific activity of the labeled cRNAs (pmol Cy3/μg cRNA) were measured by NanoDrop ND-1000.

growth_protocol: BMSCs were cultured in a humidified, 5% CO2 incubator at 37°C with Mesenchymal Stem Cell Medium (MSCM) (ScienCell, Carlsbad, CA, USA) supplemented with 5% fetal bovine serum (FBS) and 1% penicillin/streptomycin. The culture medium was changed every 3 days.

extract_protocol: TRIzol reagents (Invitrogen) was used to extracted total RNA from BMSCs of three samples osteogenic induced 0 days and 7 days. RNA quantity and quality were measured by NanoDrop ND-1000. RNA integrity was assessed by standard denaturing agarose gel electrophoresis.

treatment_protocol: The BMSCs were were divided into two groups: the non-induced group (n =3) and the induced chondrogenic differentiation group (n =3). The non-induced group were cultured as previously described. For chondrogenic differentiation, BMSCs were grown in chondrogenic differentiation medium using the StemPro chondrogenesis differentiation kit (Invitrogen, Carlsbad, CA, USA) for 7 days. The chondrogenic differentiation medium was renewed every 3 days.

value: long bone

tag: treatment

value: uninduced, 0d


title: HS_M1_1_sample 1007


title: Chip91484_r48_c62_Untreated

description: Chip91484_r48_c62_Untreated_GGTTCATAGTC-AAGAGGCA


title: MM_M1_1_sample 3043


title: MM_M1_1_sample 3034


title: Chip91484_r48_c42_Untreated

description: Chip91484_r48_c42_Untreated_GTAGGATGGAC-AAGAGGCA


title: Chip91484_r49_c3_Treated

description: Chip91484_r49_c3_Treated_GTTATCATCAA-AAGAGGCA


title: Chip91484_r48_c35_Treated

description: Chip91484_r48_c35_Treated_GTTAGGATCGG-AAGAGGCA


title: Chip91484_r49_c0_Treated

description: Chip91484_r49_c0_Treated_GTTATGCTGAG-AAGAGGCA


title: Chip91484_r48_c69_Untreated

description: Chip91484_r48_c69_Untreated_GGTTAGAGTCC-AAGAGGCA


title: Chip91484_r49_c14_Neg

description: Chip91484_r49_c14_Neg_Ctrl_GTATCTACTAC-AAGAGGCA


title: Chip91484_r48_c52_Treated

description: Chip91484_r48_c52_Treated_GTCGCTATGGT-AAGAGGCA


title: HS_M1_1_sample 1005


title: MM_M1_1_sample 3033


title: HS_M1_1_sample 1009


title: MM_M1_1_sample 3032


title: MM_M1_1_sample 3036


title: HS_M1_1_sample 1006


title: MM_M1_1_sample 3031


title: HS_M1_1_sample 1004


title: MM_M1_1_sample 3035


title: BMSCs induced chondrogenic differentiation 7d rep1

description: Super enhancer lncRNAs expression after chondrogenic induction 7 days of BMSCs

value: induced chondrogenic differentiation, 7d


title: MM_M1_1_sample 3029


title: Chip91484_r48_c32_Treated

description: Chip91484_r48_c32_Treated_GTTATACGACG-AAGAGGCA


title: BMSCs induced chondrogenic differentiation 7d rep2


title: shVprBP_rep3

city: Los Angeles

first: Nikhil

middle: Baban

last: Ghate

address: 1450 Biggy st, Norris Research Tower

department: Biochemistry and Molecular Medicine

institute: University of Southern California

data_processing:
Sequenced RNA-seq reads were mapped to hg38 GENCODE version 29 using STAR 2.6.1d. Aligned reads were quantified at gene levels, and gene counts were normalized using the upper quartile normalization method. After principal components analysis with normalized gene counts, differentially expressed genes were selected by using the Gene Specific Algorithm from Partek® Flow® software (Partek Inc., MO, USA). We used a false discovery rate cut-off of 0.05 and absolute fold change > 2 to select statistically significantly differently expressed genes.
Genome_build: hg38 GENCODE version 29
Supplementary_files_format_and_content: Normalized counts in text format

molecule: polyA RNA

source_name: VprBP-knocked down colon cancer cell line (SW620)

growth_protocol: Cells were growing in DMEM supplemented with 10% FBS and 1% penicillin and streptomycin

extract_protocol:
RNA was prepared from SW620 cells using the Qiagen RNeasy kit (Qiagen Inc., CA, USA) according to the manufacturer’s instructions
Strand specific libraries were prepared using a KAPA Stranded mRNA-Seq Kit with KAPA mRNA Capture Beads (KAPA Biosystem Inc., MA, USA), and validated on an Agilent Bioanalyzer with the DNA1000 kit. Pooled libraries were prepared, denatured, diluted to 15 pM, and then clonally clustered onto the sequencing flow cell using the Illumina cBOT Cluster Generation Station and Cluster Kit v3-cBot-HS. The clustered flow cell was sequenced with 1X50 SE reads on the Illumina HiSeq2000 according to manufacturer’s protocol. Base conversion was made using OLB version 1.9, de-multiplexed, and converted to Fastq using CASAVA version 1.8 (Illumina, CA, USA).

treatment_protocol: DNA oligonucleotides (5’-CGAGAAACTGAGTCAAATGAA-3’) encoding shRNAs speciﬁc for VprBP coding region were annealed and ligated into the lentiviral expression vector pLKO.1 (Addgene, MA, USA). Lentiviral particles were generated in 293T cells by transfecting plasmids encoding VSV-G, NL-BH, and the shRNA. Two days after transfection, the soups containing the viruses were collected and used to infect SW620 and Caco2 cells in the presence of polybrene (8 μg/ml). The cell lines were selected for two weeks in presence of puromycin (2 μg/ml). For rescue experiments, VprBP-depleted cells were infected with lentiviruses expressing shRNA-resistant VprBP wild type or kinase-dead mutant K194R and selected for two weeks in presence of hygromycin (800 μg/ml for SW620 cells and 200 μg/ml for Caco2 cells)

tag: knockdown

value: shVprBP


title: BMSCs uninduced 0d rep1


title: Chip91484_r48_c3_Treated

description: Chip91484_r48_c3_Treated_GTCGGAGCTAG-AAGAGGCA


title: MM_M1_1_sample 3030


title: HS_M1_1_sample 1002


title: Chip91484_r48_c25_Treated

description: Chip91484_r48_c25_Treated_GTTATAATTCT-AAGAGGCA


title: HS_M1_1_sample 1001


title: Chip91484_r48_c21_Untreated

description: Chip91484_r48_c21_Untreated_GGTTAGGCGCA-AAGAGGCA


title: shVprBP_rep1


title: HS_M1_1_sample 1003


title: MM_M1_1_sample 3027


title: Chip91484_r48_c28_Treated

description: Chip91484_r48_c28_Treated_GTTAGATACTT-AAGAGGCA


title: Chip91484_r48_c19_Untreated

description: Chip91484_r48_c19_Untreated_GGTTCATTGCG-AAGAGGCA


title: HS_M1_1_sample 998


title: shVprBP_rep2


title: HS_M1_1_sample 1000


title: MM_M1_1_sample 3026


title: Rod/Pineal Replicate 1

city: Bunkyo-ku

first: Daisuke

last: Kojima

state: Tokyo

address: 7-3-1 Hongo

department: Department of Biological Sciences, School of Science

country: Japan

institute: The University of Tokyo

hyb_protocol: Equal amounts of Cy3 and Cy5-labeled cRNA (825 ng) from two different samples were hybridized to zebrafish microarrays for 17 h at 60 °C.

scan_protocol: The hybridized arrays were then washed and scanned using an Agilent microarray scanner (G2505 C; Agilent Technologies)

data_processing: Data were extracted from the scanned image using Feature Extraction version 10.5.1.1 (Agilent Technologies).

organism: Danio rerio

label_protocol: Cy3- or Cy5- labeled cRNA probe was synthesized from 150 ng of total RNA using the Quick-Amp Labeling Kit (Agilent Technologies).

extract_protocol: Total RNA was isolated from the sorted cells using RNeasy Extraction kit (Qiagen).

tag: developmental stage

value: Adult

tag: strain

value: Ekkwill

tag: transgenic line


title: HS_M1_1_sample 999


title: MM_M1_1_sample 3025


title: Rod/Pineal Replicate 2


title: Rod/Cone Replicate 2


title: MM_M1_1_sample 3024


title: Rod/Cone Replicate 1


title: HS_M1_1_sample 997


title: shControl_rep3

source_name: Colon cancer cell line (SW620)-Scrambled

value: shControl


title: Chip91484_r47_c7_Treated

description: Chip91484_r47_c7_Treated_GGTTACTCGGC-AAGAGGCA


title: Chip91484_r47_c69_Untreated

description: Chip91484_r47_c69_Untreated_GGCGGCTGCGA-AAGAGGCA


title: shControl_rep2


title: MM_M1_1_sample 3021


title: HS_M1_1_sample 996


title: MM_M1_1_sample 3023


title: Chip91484_r47_c61_Untreated

description: Chip91484_r47_c61_Untreated_GGCTCGTTAGC-AAGAGGCA


title: MM_M1_1_sample 3022


title: Chip91484_r47_c63_Untreated

description: Chip91484_r47_c63_Untreated_GGCGGTAGTAC-AAGAGGCA


title: Chip91484_r47_c62_Untreated

description: Chip91484_r47_c62_Untreated_GGCTGCCATAT-AAGAGGCA


title: HS_M1_1_sample 995


title: HS_M1_1_sample 994


title: MM_M1_1_sample 3020


title: Chip91484_r47_c60_Untreated

description: Chip91484_r47_c60_Untreated_GGCGTTGACTG-AAGAGGCA


title: MM_M1_1_sample 3018


title: HS_M1_1_sample 992


title: Chip91484_r47_c53_Treated

description: Chip91484_r47_c53_Treated_GGTTAACGCTA-AAGAGGCA


title: shControl_rep1


title: Chip91484_r47_c58_Treated

description: Chip91484_r47_c58_Treated_GGTCTTATACG-AAGAGGCA


title: HS_M1_1_sample 991


title: Chip91484_r47_c50_Treated

description: Chip91484_r47_c50_Treated_GGTTACTAATG-AAGAGGCA


title: MM_M1_1_sample 3017


title: EC109 cells harvested from the second dish were transfected with Lv-sh-KDM5C

city: Shantou

first: Li

middle: Ming

last: kai

address: Dong Xia

institute: Shantou University

hyb_protocol: Array hybridization and wash was performed using GeneChip® Hybridization, Wash and Stain Kit (Cat#900720, Affymetrix, Santa Clara, CA, US)in Hybridization Oven 645 (Cat#00-0331-220V, Affymetrix, Santa Clara, CA, US)and Fluidics Station 450 (Cat#00-0079, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions.

scan_protocol: Slides were scanned by GeneChip® Scanner 3000 (Cat#00-00212, Affymetrix, Santa Clara, CA, US) and Command Console Software 4.0 (Affymetrix, Santa Clara, CA, US) with default settings.

data_processing: Raw data were normalized by RMA algorithm, Affy packages in R.

label: biotin

label_protocol: Total RNA were amplified, labeled and purified by using GeneChip  3' IVT PLUS Reagent Kit (Cat#902416, Affymetrix, Santa Clara, CA, US) followed the manufacturer’s instructions to obtain biotin labeled cRNA.

growth_protocol: EC109 cells were cultured in Dulbecco's  modified Eagle's medium (DMEM) containing 10% (v/v) fetal  bovine serum (FBS; Invitrogen Life Technologies, Carlsbad,  CA, USA), penicillin (final concentration, 100 U/ml), and strep-  tomycin (final concentration, 100 mg/ml), under a humidified  atmosphere with 5% CO 2 at 37˚C.

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: EC109 cells were cultured in 6-well plates at a density of 5 × 104 cells/well. When cells were approximately30-40% confluence,the cells were infected with Lv-shKDM5C or Lv-NC under the condition that the multiplicity of infection(MOI) is 10 for 12 h.Then discarded lentivirus and continued to cultured the cell for 48h.Puromysin(final concentration 2ug/ml,Sigma, Germany) was added to original culture medium, and continued to culture for a week.Finally,obtained EC109 cells stably expressing sh-KDM5C.

value: human esophageal squamous cell carcinoma (ESCC) cell line

tag: genotype/variation

value: lentiviral vector carrying carrying KDM5C specific shRNA (Lv-shKDM5C)


title: HS_M1_1_sample 990


title: EC109 cells harvested from the third dish were transfected with Lv-sh-KDM5C


title: MM_M1_1_sample 3016


title: MM_M1_1_sample 3019


title: Chip91484_r47_c44_Untreated

description: Chip91484_r47_c44_Untreated_GCTTGGTAGAC-AAGAGGCA


title: HS_M1_1_sample 989


title: Chip91484_r47_c43_Untreated

description: Chip91484_r47_c43_Untreated_GCTTGGCGTTC-AAGAGGCA


title: MM_M1_1_sample 3015


title: HS_M1_1_sample 988


title: SM-GE5P2_S273_E1-50

city: Seattle

first: Hongkui

last: Zeng

state: WA

address: 615 Westlake Ave N

institute: Allen Institute for Brain Science

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz

data_processing:
Processing of SSv4 libraries was performed as described previously (Tasic et al., 2018). Briefly, libraries were sequenced on an Illumina HiSeq2500 platform (paired-end with read lengths of 50 bp) to a target read depth of 0.5M reads per cell (range 100,275-12,329,698, median 1,003,867). The Illumina sequencing reads were aligned to GRCm38.p3 (mm10) using a RefSeq annotation gff file retrieved from NCBI on 18 January 2016
Sequence alignment was performed using STAR v2.5.3. (Dobin et al., 2013) in the two-pass mode. PCR duplicates were masked and removed using STAR option ‘bamRemoveDuplicates’. Only uniquely aligned reads were used for gene quantification. Gene counts were computed using the R GenomicAlignments package (Lawrence et al., 2013) and summarizeOverlaps function in ‘IntersectionNotEmpty’ mode for exonic and intronic regions separately. For the SSv4 dataset, we only used exonic regions for gene quantification. Cells that met any one of the following criteria were removed: < 100,000 total reads, < 1,000 detected genes (with CPM > 0), < 75% of reads aligned to genome, or CG dinucleotide odds ratio > 0.5. Doublets were removed by first classifying cells into broad classes of excitatory, inhibitory, and non-neuronal based on known markers. Reads that did not map to the genome were then aligned to synthetic constructs (i.e. ERCC) sequences and the E. coli genome (version ASM584v2) and were used as a QC metric.
Genome_build: mm10
Supplementary_files_format_and_content: cpm.csv.gz
Supplementary_files_format_and_content: exon_counts.csv.gz
Supplementary_files_format_and_content: intron_counts.csv.gz

organism: Mus musculus

source_name: non-retroseq cells mapped to Car3 subclass

growth_protocol: All procedures were carried out in accordance with Institutional Animal Care and Use Committee protocols 1508, 1510, and 1511 at the Allen Institute for Brain Science. Animals were provided food and water ad libitum and were maintained on a regular 14/10-h day/night cycle at no more than five adult animals per cage. Animals were maintained on the C57BL/6J background. Experimental animals were heterozygous for the recombinase transgenes and the reporter transgenes. Standard tamoxifen treatment for CreER lines included a single dose of tamoxifen (40 μl of 50 mg ml−1) dissolved in corn oil and administered via oral gavage at postnatal day (P)10–14. Cux2-CreERT2;Ai140 mice received tamoxifen treatment at P35 ± 5 for five consecutive days. We excluded any animals with anophthalmia or microphthalmia.

extract_protocol:
We isolated single cells as previously described (Hempel et al., 2007; Sugino et al., 2006; Tasic et al., 2016) with modifications. We mostly employed layer-enriching dissections, with focus on a single layer. Broader dissections (no layer enrichment or multiple layers combined) were employed for lines which label small numbers of cells, in order to facilitate isolation of sufficient number of cells. We updated our ACSF formulation to consist of CaCl2 (0.5 mM), glucose (25 mM), HCl (96 mM), HEPES (20 mM), MgSO4 (10 mM), NaH2PO4 (1.25 mM), myo-inositol (3 mM), N-acetylcysteine (12 mM), NMDG (96 mM), KCl (2.5 mM), NaHCO3 (25 mM), sodium L-ascorbate (5 mM), sodium pyruvate (3 mM), taurine (0.01 mM), thiourea (2 mM), and bubbled with carbogen gas (95% O2 and 5% CO2). For samples collected after 12/16/2016, the ACSF formulation also included trehalose (13.2 mM). Mice were anesthetized with isoflurane and perfused with cold carbogen-bubbled ACSF. The brain was dissected, submerged in ACSF, embedded in 2% agarose, and sliced into 250-µm coronal sections on a compresstome (Precisionary). Enzymatic digestion, trituration into single cell suspension, and fluorescence-activated cell sorting (FACS) of single cells were carried out as previously described (Tasic et al., 2016). Cells were sorted into 8-well strips containing lysis buffer from SMART-Seq v4 kit with RNase inhibitor (0.17 U/µl), immediately frozen on dry ice, and stored at -80°C.
We used the SMART-Seq v4 Ultra Low Input RNA Kit for Sequencing (Takara Cat#634894) to reverse transcribe poly(A) RNA and amplify cDNA according to the manufacturer’s instructions. We performed reverse transcription and cDNA amplification for 18 PCR cycles in 8-well strips, in sets of 12-24 strips at a time. At least 1 control strip was used per amplification set, which contained 4 wells without cells and 4 wells with 10 pg control RNA. Control RNA was either Mouse Whole Brain Total RNA (Zyagen, MR-201) or control RNA provided in the SMART-Seq v4 kit. All samples proceeded through NexteraXT DNA Library Preparation (Illumina FC-131-1096) using NexteraXT Index Kit V2 Set A (FC-131-2001). NexteraXT DNA Library prep was performed according to manufactorer’s instructions except that the volumes of all reagents including cDNA input were decreased to 0.4× or 0.5× by volume. Details are available in Documentation on the Allen Institute data portal at: http://celltypes.brain-map.org/.

treatment_protocol: For retrogradely-labeled samples, we injected AAV2-retro-EF1a-Cre (Tervo et al., 2016), rabies virus RV-dGdL-Cre (Chatterjee et al., 2018), or CAV-Cre (Hnasko et al., 2006) into brains of Ai14 or RCL-Sun1sfGFP mice, RV-dL-FlpO into Ai65F mice, AAV2-retro-EF1a-dTomato into Cux2-CreERT2;Ai140 mice, Gnb4-IRES2-CreERT2;Ai140 mice or Gnb4-IRES2-CreERT2;Ai148 mice, as previously described (Tasic et al., 2016). RFP+ or GFP+ single cells were isolated from various cortical regions, depending on the injection area.

tag: age

value: 93 days

tag: region

value: VIS

tag: roi

value: RFP-positive

value: left

tag: batch

value: Car3 5


title: MM_M1_1_sample 3014

value: brain

value: M


title: HS_M1_1_sample 993

value: Brain


title: EC109 cells harvested from the first dish were transfected with Lv-sh-KDM5C


title: HS_M1_1_sample 987


title: Chip91484_r47_c36_Untreated

description: Chip91484_r47_c36_Untreated_GCTTGCGAGCC-AAGAGGCA

value: Invasive Ductal Carcinoma


title: EC109 cells harvested from the thrid dish were transfected with Lv-NC

value: empty lentiviral vector (Lv-NC)


title: EC109 cells harvested from the first dish were transfected with Lv-NC


title: SM-GE5P2_S164_E1-50

value: Car3 1


title: EC109 cells harvested from the second dish were transfected with Lv-NC


title: HS_M1_1_sample 986


title: Chip91484_r47_c23_Untreated

description: Chip91484_r47_c23_Untreated_GGCTATAACCG-AAGAGGCA


title: MM_M1_1_sample 3012


title: MM_M1_1_sample 3011


title: SM-GE5P2_S163_E1-50


title: SM-GE5P2_S067_E1-50


title: SM-GE5P2_S166_E1-50


title: Chip91484_r47_c15_Untreated

description: Chip91484_r47_c15_Untreated_GGCGTAGCTAT-AAGAGGCA


title: HS_M1_1_sample 985


title: Chip91484_r47_c11_Treated

description: Chip91484_r47_c11_Treated_GGTTAATGATT-AAGAGGCA


title: HS_M1_1_sample 984


title: Chip91484_r46_c8_Treated

description: Chip91484_r46_c8_Treated_GGTATGGTCTT-AAGAGGCA


title: HS_M1_1_sample 983


title: MM_M1_1_sample 3010


title: HS_M1_1_sample 982


title: MM_M1_1_sample 3013


title: MM_M1_1_sample 3009


title: SM-GE5P2_S050_E1-50

value: right


title: SM-GE5P2_S043_E1-50


title: SM-GE5PH_S052_E1-50


title: Chip91484_r47_c40_Untreated

description: Chip91484_r47_c40_Untreated_GCTTCGCGAGT-AAGAGGCA


title: MM_M1_1_sample 3008


title: Chip91484_r46_c66_Untreated

description: Chip91484_r46_c66_Untreated_GCTGGTACGAC-AAGAGGCA


title: HS_M1_1_sample 981


title: SM-GE5PE_S279_E1-50

value: Car3 2


title: Chip91484_r46_c49_Treated

description: Chip91484_r46_c49_Treated_GGTAGTCGACT-AAGAGGCA


title: MM_M1_1_sample 3006


title: HS_M1_1_sample 979


title: HS_M1_1_sample 980


title: MM_M1_1_sample 3005


title: HS_M1_1_sample 978


title: SM-GE5PE_S278_E1-50


title: Chip91484_r46_c45_Untreated

description: Chip91484_r46_c45_Untreated_GGATTATGGTT-AAGAGGCA


title: HS_M1_1_sample 977


title: Chip91484_r46_c44_Untreated

description: Chip91484_r46_c44_Untreated_GGCGGATTGGT-AAGAGGCA


title: Chip91484_r46_c43_Untreated

description: Chip91484_r46_c43_Untreated_GGCGGAGTAGA-AAGAGGCA


title: MM_M1_1_sample 3003


title: MM_M1_1_sample 3004


title: HS_M1_1_sample 976


title: BMSCs uninduced 0d rep2

description: Super enhancer lncRNAs expression after chondrogenic induction 0 days of BMSCs

value: long bone

value: uninduced, 0d


title: SM-GE5PE_S009_E1-50

value: 56 days


title: Chip91484_r46_c4_Treated

description: Chip91484_r46_c4_Treated_GGTATATACCT-AAGAGGCA


title: MM_M1_1_sample 3002


title: MM_M1_1_sample 3007


title: Chip91484_r46_c63_Untreated

description: Chip91484_r46_c63_Untreated_GCTGGAGTAGG-AAGAGGCA


title: SM-GE5PE_S284_E1-50


title: Chip91484_r46_c36_Untreated

description: Chip91484_r46_c36_Untreated_GGCATACTGAG-AAGAGGCA


title: HS_M1_1_sample 975


title: BMSCs induced chondrogenic differentiation 7d rep3

description: Super enhancer lncRNAs expression after chondrogenic induction 7 days of BMSCs

value: induced chondrogenic differentiation, 7d


title: SM-GE5PC_S379_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz

value: 93 days


title: HS_M1_1_sample 1008


title: MM_M1_1_sample 3001


title: SM-GE5PE_S170_E1-50

value: VIS


title: SM-GE5PE_S103_E1-50

value: RFP-positive


title: HS_M1_1_sample 974


title: MM_M1_1_sample 2999


title: SM-GE5PC_S205_E1-50

value: left


title: MM_M1_1_sample 3000


title: Chip91484_r46_c32_Treated

description: Chip91484_r46_c32_Treated_GGTCTGCCGTC-AAGAGGCA


title: SM-GE5PC_S278_E1-50


title: Chip91484_r46_c31_Treated

description: Chip91484_r46_c31_Treated_GGTCTGATGCA-AAGAGGCA


title: SM-GE5PB_S290_E1-50

value: Car3 5


title: MM_M1_1_sample 2997

value: brain


title: HS_M1_1_sample 972

value: M


title: HS_M1_1_sample 970

value: Brain


title: HS_M1_1_sample 973


title: MM_M1_1_sample 2996


title: SM-GE5PP_S384_E1-50


title: Chip91484_r46_c24_Treated

description: Chip91484_r46_c24_Treated_GGTCTCCTGGA-AAGAGGCA

value: Invasive Ductal Carcinoma


title: Chip91484_r45_c8_Treated

description: Chip91484_r45_c8_Treated_GGTCTCTTCCG-AAGAGGCA


title: HS_M1_1_sample 971


title: SM-GE5PP_S381_E1-50


title: MM_M1_1_sample 2998


title: SM-GE5PB_S196_E1-50


title: HS_M1_1_sample 967


title: Chip91484_r46_c23_Untreated

description: Chip91484_r46_c23_Untreated_GCTTCTCGAAG-AAGAGGCA


title: HS_M1_1_sample 969


title: SM-GE5PB_S102_E1-50


title: HS_M1_1_sample 968


title: MM_M1_1_sample 2994


title: Chip91484_r45_c66_Untreated

description: Chip91484_r45_c66_Untreated_GGATCGCGCCA-AAGAGGCA


title: MM_M1_1_sample 2993


title: Chip91484_r45_c69_Untreated

description: Chip91484_r45_c69_Untreated_GGAGTTGGACC-AAGAGGCA


title: SM-GE5PP_S214_E1-50

value: Car3 6


title: Chip91484_r45_c61_Untreated

description: Chip91484_r45_c61_Untreated_GGATGCCTCGA-AAGAGGCA


title: HS_M1_1_sample 965


title: HS_M1_1_sample 966


title: MM_M1_1_sample 2992


title: SM-GE5PP_S047_E1-50

value: Car3 1


title: SM-GE5PP_S087_E1-50


title: SM-GE5PP_S368_E1-50


title: Chip91484_r45_c58_Treated

description: Chip91484_r45_c58_Treated_GGTCGCAGAGA-AAGAGGCA


title: HS_M1_1_sample 964


title: HS_M1_1_sample 963


title: Chip91484_r45_c43_Untreated

description: Chip91484_r45_c43_Untreated_GCTGGTATAAG-AAGAGGCA


title: MM_M1_1_sample 2991


title: MM_M1_1_sample 2989


title: MM_M1_1_sample 2990


title: MM_M1_1_sample 2995


title: Chip91484_r45_c64_Untreated

description: Chip91484_r45_c64_Untreated_GGATAATCCGT-AAGAGGCA


title: Chip91484_r45_c42_Untreated

description: Chip91484_r45_c42_Untreated_GCTGGCCGTCC-AAGAGGCA


title: HS_M1_1_sample 962


title: MM_M1_1_sample 2988


title: SM-GE5PP_S033_E1-50


title: SM-GE5PP_S031_E1-50


title: HS_M1_1_sample 961


title: Chip91484_r45_c20_Untreated

description: Chip91484_r45_c20_Untreated_GGCGATCGACG-AAGAGGCA


title: MM_M1_1_sample 2987


title: HS_M1_1_sample 960


title: MM_M1_1_sample 2986


title: Chip91484_r44_c7_Treated

description: Chip91484_r44_c7_Treated_GGTAGAGTTAT-AAGAGGCA


title: SM-GE5PP_S009_E1-50


title: SM-GE5PO_S263_E1-50

value: right


title: Chip91484_r44_c67_Untreated

description: Chip91484_r44_c67_Untreated_GCTGCGTCCTC-AAGAGGCA


title: MM_M1_1_sample 2985


title: SM-GE5PO_S166_E1-50


title: Chip91484_r44_c49_Treated

description: Chip91484_r44_c49_Treated_GGTAGAATCCT-AAGAGGCA


title: MM_M1_1_sample 2984


title: HS_M1_1_sample 958


title: HS_M1_1_sample 959


title: SM-GE5PO_S076_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: HS_M1_1_sample 957


title: MM_M1_1_sample 2982


title: HS_M1_1_sample 955


title: Chip91484_r44_c27_Treated

description: Chip91484_r44_c27_Treated_GGTCGAAGCTT-AAGAGGCA


title: SM-GE5PP_S015_E1-50


title: Chip91484_r45_c22_Untreated

description: Chip91484_r45_c22_Untreated_GGATTAGCTAC-AAGAGGCA


title: MM_M1_1_sample 2983


title: Chip91484_r44_c2_Treated

description: Chip91484_r44_c2_Treated_GGTAGATGAGT-AAGAGGCA


title: MM_M1_1_sample 2980


title: HS_M1_1_sample 954


title: MM_M1_1_sample 2981


title: Chip91484_r44_c23_Untreated

description: Chip91484_r44_c23_Untreated_GCTGCATGGTC-AAGAGGCA


title: SM-GE5PN_S363_E1-50


title: HS_M1_1_sample 953


title: SM-GE5PO_S059_E1-50


title: Chip91484_r44_c19_Untreated

description: Chip91484_r44_c19_Untreated_GCTGCTCCTTA-AAGAGGCA


title: MM_M1_1_sample 2979


title: SM-GE5PN_S347_E1-50


title: HS_M1_1_sample 952


title: MM_M1_1_sample 2978


title: Chip91484_r44_c17_Untreated

description: Chip91484_r44_c17_Untreated_GCTGCAGTCGA-AAGAGGCA


title: SM-GE5PN_S166_E1-50


title: SM-GE5PO_S066_E1-50


title: SM-GE5PN_S164_E1-50


title: MM_M1_1_sample 2977


title: Chip91484_r44_c4_Treated

description: Chip91484_r44_c4_Treated_GGTAATTGCAT-AAGAGGCA


title: Chip91484_r44_c14_Untreated

description: Chip91484_r44_c14_Untreated_GCTGCTGCAAC-AAGAGGCA


title: HS_M1_1_sample 950


title: HS_M1_1_sample 956


title: Chip91484_r44_c0_Treated

description: Chip91484_r44_c0_Treated_GGTACTGACGC-AAGAGGCA


title: HS_M1_1_sample 949


title: SM-GE5PM_S014_E1-50

value: Car3 2


title: MM_M1_1_sample 2975


title: Chip91484_r43_c7_Treated

description: Chip91484_r43_c7_Treated_GGTCCTCATGA-AAGAGGCA


title: HS_M1_1_sample 947


title: Chip91484_r43_c68_Untreated

description: Chip91484_r43_c68_Untreated_GGAGGTTACTA-AAGAGGCA


title: SM-GE5PL_S379_E1-50


title: HS_M1_1_sample 948


title: SM-GE5PL_S092_E1-50


title: HS_M1_1_sample 951


title: Chip91484_r43_c50_Treated

description: Chip91484_r43_c50_Treated_GGTCCTACGGT-AAGAGGCA


title: MM_M1_1_sample 2973


title: HS_M1_1_sample 946


title: Chip91484_r43_c33_Treated

description: Chip91484_r43_c33_Treated_GGCTTATGAGG-AAGAGGCA


title: MM_M1_1_sample 2972


title: SM-GE5PM_S347_E1-50


title: MM_M1_1_sample 2971


title: SM-GE5UC_S192_E1-50

value: 53 days

value: VISp


title: MM_M1_1_sample 2976


title: Chip91484_r43_c29_Treated

description: Chip91484_r43_c29_Treated_GGTAACCTGAC-AAGAGGCA


title: SM-GE5UC_S190_E1-50


title: HS_M1_1_sample 944


title: MM_M1_1_sample 2970


title: HS_M1_1_sample 943


title: HS_M1_1_sample 945


title: SM-GE5UC_S188_E1-50


title: MM_M1_1_sample 2974


title: Chip91484_r43_c17_Untreated

description: Chip91484_r43_c17_Untreated_GGAGCGTTGGT-AAGAGGCA


title: SM-GE5UC_S186_E1-50


title: HS_M1_1_sample 942


title: MM_M1_1_sample 2968


title: SM-GE5PK_S306_E1-50

value: 56 days


title: Chip91484_r43_c10_Treated

description: Chip91484_r43_c10_Treated_GGTCATACGAA-AAGAGGCA


title: HS_M1_1_sample 941


title: MM_M1_1_sample 2967


title: SM-GE5UC_S181_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: Chip91484_r42_c66_Untreated

description: Chip91484_r42_c66_Untreated_GAAGATCCGGT-AAGAGGCA


title: SM-GE5UC_S178_E1-50


title: HS_M1_1_sample 940


title: Chip91484_r43_c25_Treated

description: Chip91484_r43_c25_Treated_GGTAAGCGTAA-AAGAGGCA


title: Chip91484_r42_c64_Untreated

description: Chip91484_r42_c64_Untreated_GAAGAGCCATT-AAGAGGCA


title: MM_M1_1_sample 2965


title: SM-GE5UC_S176_E1-50


title: MM_M1_1_sample 2966


title: MM_M1_1_sample 2964


title: HS_M1_1_sample 939


title: SM-GE5UC_S175_E1-50


title: MM_M1_1_sample 2963


title: HS_M1_1_sample 937


title: MM_M1_1_sample 2969


title: Chip91484_r42_c45_Untreated

description: Chip91484_r42_c45_Untreated_GAGTTGCTGAC-AAGAGGCA


title: SM-GE5UC_S083_E1-50


title: SM-GE5UC_S084_E1-50


title: SM-GE5UC_S081_E1-50


title: Chip91484_r42_c28_Treated

description: Chip91484_r42_c28_Treated_GCGTTCCAGTA-AAGAGGCA


title: HS_M1_1_sample 936


title: HS_M1_1_sample 935


title: MM_M1_1_sample 2961


title: Chip91484_r42_c22_Untreated

description: Chip91484_r42_c22_Untreated_GCTCCGATCCT-AAGAGGCA


title: HS_M1_1_sample 934


title: SM-GE5UC_S080_E1-50


title: MM_M1_1_sample 2962


title: Chip91484_r42_c60_Untreated

description: Chip91484_r42_c60_Untreated_GAAGATCAGAA-AAGAGGCA


title: Chip91484_r42_c14_Untreated

description: Chip91484_r42_c14_Untreated_GCTCTCATAAG-AAGAGGCA


title: MM_M1_1_sample 2959


title: MM_M1_1_sample 2960


title: HS_M1_1_sample 938


title: Chip91484_r42_c6_Treated

description: Chip91484_r42_c6_Treated_GGTAACCGCGG-AAGAGGCA


title: HS_M1_1_sample 932


title: MM_M1_1_sample 2958


title: SM-GE5UC_S067_E1-50


title: Chip91484_r41_c64_Untreated

description: Chip91484_r41_c64_Untreated_GAGGCGTTATT-AAGAGGCA


title: SM-GE5UC_S074_E1-50


title: MM_M1_1_sample 2957


title: SM-GE5UB_S361_E1-50


title: MM_M1_1_sample 2956


title: Chip91484_r41_c54_Treated

description: Chip91484_r41_c54_Treated_GCGTATGGCCT-AAGAGGCA


title: Chip91484_r41_c51_Treated

description: Chip91484_r41_c51_Treated_GCGGTCCATCC-AAGAGGCA


title: SM-GE5UW_S381_E1-50

value: 58 days

value: SSs


title: HS_M1_1_sample 930


title: Chip91484_r41_c71_Untreated

description: Chip91484_r41_c71_Untreated_GAGGTTAGTTG-AAGAGGCA


title: Chip91484_r41_c39_Untreated

description: Chip91484_r41_c39_Untreated_GAAGACTTGGT-AAGAGGCA


title: SM-GE5UW_S374_E1-50


title: SM-GE5UW_S285_E1-50


title: Chip91484_r41_c28_Treated

description: Chip91484_r41_c28_Treated_GCATTCGAGTC-AAGAGGCA


title: HS_M1_1_sample 933


title: HS_M1_1_sample 929


title: MM_M1_1_sample 2955


title: HS_M1_1_sample 928


title: Chip91484_r41_c38_Untreated

description: Chip91484_r41_c38_Untreated_GAAGATGCAAG-AAGAGGCA


title: SM-GE5UW_S355_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: Chip91484_r41_c27_Treated

description: Chip91484_r41_c27_Treated_GCATTCATCAG-AAGAGGCA


title: MM_M1_1_sample 2953


title: Chip91484_r41_c24_Treated

description: Chip91484_r41_c24_Treated_GCCATGCCATG-AAGAGGCA


title: HS_M1_1_sample 925


title: HS_M1_1_sample 931


title: MM_M1_1_sample 2954


title: SM-GE5UW_S271_E1-50


title: MM_M1_1_sample 2952


title: HS_M1_1_sample 927


title: SM-GE5UW_S354_E1-50


title: HS_M1_1_sample 926


title: MM_M1_1_sample 2951


title: Chip91484_r41_c18_Untreated

description: Chip91484_r41_c18_Untreated_GATCTGCTAAC-AAGAGGCA


title: MM_M1_1_sample 2949


title: MM_M1_1_sample 2950


title: HS_M1_1_sample 924


title: HS_M1_1_sample 923


title: SM-GE5UW_S258_E1-50


title: SM-GE5UW_S265_E1-50


title: Chip91484_r40_c71_Untreated

description: Chip91484_r40_c71_Untreated_GAACTTAGTAC-AAGAGGCA


title: Chip91484_r40_c70_Untreated

description: Chip91484_r40_c70_Untreated_GAACTCTGGTT-AAGAGGCA


title: SM-GE5UW_S253_E1-50


title: HS_M1_1_sample 922


title: MM_M1_1_sample 2948


title: HS_M1_1_sample 921


title: MM_M1_1_sample 2947


title: SM-GE5UW_S236_E1-50

value: F

value: 60 days


title: Chip91484_r40_c56_Treated

description: Chip91484_r40_c56_Treated_GCATCCTCTCG-AAGAGGCA


title: Chip91484_r40_c43_Untreated

description: Chip91484_r40_c43_Untreated_GAGTCGCGGCC-AAGAGGCA


title: HS_M1_1_sample 920


title: SM-GE5UW_S191_E1-50

value: RFP-positive


title: HS_M1_1_sample 918


title: SM-GE5UW_S173_E1-50


title: Chip91484_r40_c34_Treated

description: Chip91484_r40_c34_Treated_GCGGTATGCAG-AAGAGGCA


title: MM_M1_1_sample 2944


title: Chip91484_r40_c40_Untreated

description: Chip91484_r40_c40_Untreated_GAGCTTCTTCC-AAGAGGCA


title: HS_M1_1_sample 919


title: MM_M1_1_sample 2945


title: Chip91484_r40_c32_Treated

description: Chip91484_r40_c32_Treated_GCGTCTCGACT-AAGAGGCA


title: MM_M1_1_sample 2943


title: SM-GE5UW_S170_E1-50

value: Car3 5


title: HS_M1_1_sample 916


title: Chip91484_r40_c28_Treated

description: Chip91484_r40_c28_Treated_GCGGTATAAGC-AAGAGGCA


title: MM_M1_1_sample 2942

value: brain


title: HS_M1_1_sample 915

value: M


title: MM_M1_1_sample 2946


title: SM-GE5UW_S188_E1-50


title: SM-GE5UW_S169_E1-50


title: HS_M1_1_sample 914

value: Brain


title: SM-GE5UW_S155_E1-50


title: Chip91484_r40_c20_Untreated

description: Chip91484_r40_c20_Untreated_GAAGACGTCCT-AAGAGGCA

value: Invasive Ductal Carcinoma


title: HS_M1_1_sample 917


title: SM-GE5UW_S164_E1-50


title: MM_M1_1_sample 2939


title: Chip91484_r40_c18_Untreated

description: Chip91484_r40_c18_Untreated_GAAGAAGGATC-AAGAGGCA


title: HS_M1_1_sample 913


title: SM-GE5UW_S165_E1-50


title: MM_M1_1_sample 2938


title: Chip91484_r40_c10_Treated

description: Chip91484_r40_c10_Treated_GCAGGTTCTGG-AAGAGGCA


title: HS_M1_1_sample 911


title: MM_M1_1_sample 2940


title: HS_M1_1_sample 912


title: MM_M1_1_sample 2937


title: Chip91484_r4_c7_Treated

description: Chip91484_r4_c7_Treated_AACGCAGACCG-AAGAGGCA


title: SM-GE5UW_S076_E1-50


title: SM-GE5UW_S140_E1-50

value: left


title: HS_M1_1_sample 910


title: MM_M1_1_sample 2936


title: MM_M1_1_sample 2941


title: SM-GE5UW_S055_E1-50

value: Car3 1


title: Chip91484_r4_c68_Untreated

description: Chip91484_r4_c68_Untreated_AACCGATAGAC-AAGAGGCA


title: SM-GE5UW_S052_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz

value: right


title: Chip91484_r4_c56_Treated

description: Chip91484_r4_c56_Treated_AACGCAATCTT-AAGAGGCA


title: MM_M1_1_sample 2935


title: HS_M1_1_sample 908


title: Chip91484_r40_c12_Untreated

description: Chip91484_r40_c12_Untreated_GAAGAACTCTT-AAGAGGCA


title: MM_M1_1_sample 2934


title: MM_M1_1_sample 2933


title: Chip91484_r4_c55_Treated

description: Chip91484_r4_c55_Treated_AACGCAATACC-AAGAGGCA


title: Chip91484_r4_c52_Treated

description: Chip91484_r4_c52_Treated_AACGATCGGAG-AAGAGGCA


title: HS_M1_1_sample 907


title: SM-GE5UW_S047_E1-50


title: HS_M1_1_sample 906


title: HS_M1_1_sample 905


title: MM_M1_1_sample 2931


title: Chip91484_r4_c31_Treated

description: Chip91484_r4_c31_Treated_AACGGTAACGA-AAGAGGCA


title: MM_M1_1_sample 2932


title: SM-GE5UW_S046_E1-50


title: SM-GE5UV_S374_E1-50


title: HS_M1_1_sample 904


title: Chip91484_r4_c30_Treated

description: Chip91484_r4_c30_Treated_AACGGCGGTAT-AAGAGGCA


title: SM-GE5UV_S356_E1-50


title: MM_M1_1_sample 2929


title: Chip91484_r39_c69_Untreated

description: Chip91484_r39_c69_Untreated_GAATAAGGCGT-AAGAGGCA


title: HS_M1_1_sample 909


title: MM_M1_1_sample 2930


title: SM-GE5UV_S341_E1-50

value: Car3 6


title: HS_M1_1_sample 903


title: HS_M1_1_sample 902


title: SM-GE5UW_S051_E1-50


title: SM-GE5UV_S319_E1-50


title: MM_M1_1_sample 2928


title: Chip91484_r39_c60_Untreated

description: Chip91484_r39_c60_Untreated_GACTCAAGCCT-AAGAGGCA


title: HS_M1_1_sample 901


title: MM_M1_1_sample 2927


title: HS_M1_1_sample 900


title: MM_M1_1_sample 2926


title: Chip91484_r39_c56_Treated

description: Chip91484_r39_c56_Treated_GCGGAGTTAGC-AAGAGGCA


title: Chip91484_r39_c54_Treated

description: Chip91484_r39_c54_Treated_GCGCTGATTCA-AAGAGGCA


title: SM-GE5UV_S318_E1-50


title: Chip91484_r4_c13_Untreated

description: Chip91484_r4_c13_Untreated_AACCGATCCGC-AAGAGGCA


title: HS_M1_1_sample 899


title: MM_M1_1_sample 2925


title: SM-GE5UV_S267_E1-50


title: Chip91484_r39_c48_Treated

description: Chip91484_r39_c48_Treated_GCGCTCTAATA-AAGAGGCA


title: Chip91484_r39_c45_Untreated

description: Chip91484_r39_c45_Untreated_GAACGTCCTTC-AAGAGGCA


title: MM_M1_1_sample 2924


title: MM_M1_1_sample 2923


title: HS_M1_1_sample 898


title: SM-GE5UV_S260_E1-50


title: MM_M1_1_sample 2922


title: Chip91484_r39_c36_Untreated

description: Chip91484_r39_c36_Untreated_GAACTAGATGC-AAGAGGCA


title: SM-GE5UV_S256_E1-50


title: HS_M1_1_sample 895


title: HS_M1_1_sample 896


title: MM_M1_1_sample 2921


title: Chip91484_r39_c34_Treated

description: Chip91484_r39_c34_Treated_GCAAGCTGGCG-AAGAGGCA


title: HS_M1_1_sample 894


title: SM-GE5UV_S314_E1-50


title: Chip91484_r39_c24_Treated

description: Chip91484_r39_c24_Treated_GCAATCAATTG-AAGAGGCA


title: MM_M1_1_sample 2920


title: Chip91484_r39_c31_Treated

description: Chip91484_r39_c31_Treated_GCAGAGACCGT-AAGAGGCA


title: SM-GE5UV_S227_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: SM-GE5UV_S221_E1-50


title: MM_M1_1_sample 2919


title: HS_M1_1_sample 893


title: HS_M1_1_sample 892


title: SM-GE5UV_S263_E1-50


title: HS_M1_1_sample 897


title: Chip91484_r39_c19_Untreated

description: Chip91484_r39_c19_Untreated_GAGAAGCGTAG-AAGAGGCA


title: SM-GE5UV_S210_E1-50


title: SM-GE5UV_S175_E1-50


title: Chip91484_r39_c41_Untreated

description: Chip91484_r39_c41_Untreated_GAACTACTAGT-AAGAGGCA


title: SM-GE5UV_S259_E1-50


title: HS_M1_1_sample 890


title: HS_M1_1_sample 891


title: MM_M1_1_sample 2917


title: Chip91484_r39_c14_Untreated

description: Chip91484_r39_c14_Untreated_GAGAAGGCTCT-AAGAGGCA


title: MM_M1_1_sample 2916


title: Chip91484_r39_c1_Treated

description: Chip91484_r39_c1_Treated_GCGGATGCTGG-AAGAGGCA


title: MM_M1_1_sample 2915


title: SM-GE5UV_S159_E1-50


title: SM-GE5UV_S153_E1-50


title: HS_M1_1_sample 889


title: MM_M1_1_sample 2918


title: SM-GE5UV_S149_E1-50


title: Chip91484_r38_c8_Treated

description: Chip91484_r38_c8_Treated_GCAGAACGCAT-AAGAGGCA


title: MM_M1_1_sample 2914


title: HS_M1_1_sample 888


title: HS_M1_1_sample 887


title: Chip91484_r38_c68_Untreated

description: Chip91484_r38_c68_Untreated_GAACGGTACGC-AAGAGGCA


title: SM-GE5UV_S139_E1-50


title: Chip91484_r38_c61_Untreated

description: Chip91484_r38_c61_Untreated_GAACGGCAGGT-AAGAGGCA


title: SM-GE5UV_S122_E1-50


title: MM_M1_1_sample 2913


title: HS_M1_1_sample 886


title: MM_M1_1_sample 2911


title: SM-GE5UV_S135_E1-50


title: Chip91484_r38_c46_Untreated

description: Chip91484_r38_c46_Untreated_GAAGCCGCAGT-AAGAGGCA


title: MM_M1_1_sample 2912


title: Chip91484_r38_c55_Treated

description: Chip91484_r38_c55_Treated_GCAACGTATAC-AAGAGGCA


title: HS_M1_1_sample 885


title: MM_M1_1_sample 2909


title: SM-GE5UV_S117_E1-50


title: Chip91484_r38_c51_Treated

description: Chip91484_r38_c51_Treated_GATTCTCCGGA-AAGAGGCA


title: HS_M1_1_sample 884


title: MM_M1_1_sample 2908


title: MM_M1_1_sample 2907


title: SM-GE5UV_S118_E1-50


title: MM_M1_1_sample 2910


title: SM-GE5UV_S093_E1-50


title: MM_M1_1_sample 2906


title: HS_M1_1_sample 879


title: SM-GE5UV_S046_E1-50


title: HS_M1_1_sample 882


title: SM-GE5UV_S056_E1-50


title: Chip91484_r38_c29_Treated

description: Chip91484_r38_c29_Treated_GCCTGACCGCG-AAGAGGCA


title: HS_M1_1_sample 880


title: Chip91484_r38_c30_Treated

description: Chip91484_r38_c30_Treated_GCCTGCTTACC-AAGAGGCA


title: Chip91484_r38_c45_Untreated

description: Chip91484_r38_c45_Untreated_GAAGCATGACC-AAGAGGCA


title: HS_M1_1_sample 881


title: MM_M1_1_sample 2904


title: HS_M1_1_sample 878


title: HS_M1_1_sample 883


title: Chip91484_r38_c16_Untreated

description: Chip91484_r38_c16_Untreated_GAACGTCAACT-AAGAGGCA


title: SM-GE5UV_S035_E1-50


title: Chip91484_r37_c68_Untreated

description: Chip91484_r37_c68_Untreated_CTGGATTGACC-AAGAGGCA


title: MM_M1_1_sample 2905


title: Chip91484_r37_c9_Treated

description: Chip91484_r37_c9_Treated_GCCTAACCAGT-AAGAGGCA


title: SM-GE5UT_S381_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: HS_M1_1_sample 875


title: MM_M1_1_sample 2901


title: HS_M1_1_sample 876


title: HS_M1_1_sample 877


title: Chip91484_r37_c61_Untreated

description: Chip91484_r37_c61_Untreated_CTGGATGGCAA-AAGAGGCA


title: Chip91484_r37_c64_Untreated

description: Chip91484_r37_c64_Untreated_CTGCTTCTTCA-AAGAGGCA


title: HS_M1_1_sample 874


title: SM-GE5UT_S363_E1-50


title: HS_M1_1_sample 873


title: SM-GE5UV_S049_E1-50


title: MM_M1_1_sample 2902


title: SM-GE5UT_S369_E1-50


title: HS_M1_1_sample 872


title: Chip91484_r37_c50_Treated

description: Chip91484_r37_c50_Treated_GAACGAGGAAC-AAGAGGCA


title: MM_M1_1_sample 2903


title: SM-GE5UV_S036_E1-50


title: MM_M1_1_sample 2900


title: HS_M1_1_sample 871


title: Chip91484_r37_c56_Treated

description: Chip91484_r37_c56_Treated_GAACGAGAATG-AAGAGGCA


title: MM_M1_1_sample 2899


title: SM-GE5UT_S280_E1-50


title: MM_M1_1_sample 2897


title: SM-GE5UT_S274_E1-50


title: Chip91484_r37_c62_Untreated

description: Chip91484_r37_c62_Untreated_CTGGCATGATA-AAGAGGCA


title: HS_M1_1_sample 870


title: MM_M1_1_sample 2896


title: SM-GE5UT_S267_E1-50


title: Chip91484_r37_c38_Untreated

description: Chip91484_r37_c38_Untreated_GAACGGCAATC-AAGAGGCA


title: MM_M1_1_sample 2898


title: MM_M1_1_sample 2894


title: Chip91484_r37_c25_Treated

description: Chip91484_r37_c25_Treated_GCAACCGAGGC-AAGAGGCA


title: Chip91484_r37_c32_Treated

description: Chip91484_r37_c32_Treated_GCAACCGCTCC-AAGAGGCA


title: SM-GE5UT_S271_E1-50


title: MM_M1_1_sample 2893


title: HS_M1_1_sample 866


title: SM-GE5UT_S078_E1-50


title: SM-GE5UT_S096_E1-50


title: Chip91484_r37_c30_Treated

description: Chip91484_r37_c30_Treated_GATTGCTGATA-AAGAGGCA


title: MM_M1_1_sample 2892


title: Chip91484_r36_c59_Treated

description: Chip91484_r36_c59_Treated_CTTCTTCGCTA-AAGAGGCA


title: HS_M1_1_sample 864


title: SM-GE5UT_S191_E1-50


title: HS_M1_1_sample 868


title: Chip91484_r37_c26_Treated

description: Chip91484_r37_c26_Treated_GCAACCGGACG-AAGAGGCA


title: SM-GE5US_S366_E1-50


title: SM-GE5UT_S175_E1-50


title: MM_M1_1_sample 2895


title: Chip91484_r36_c52_Treated

description: Chip91484_r36_c52_Treated_CTTCGGTTGCG-AAGAGGCA


title: Chip91484_r37_c12_Untreated

description: Chip91484_r37_c12_Untreated_GAAGCGACTAT-AAGAGGCA


title: SM-GE5US_S360_E1-50


title: HS_M1_1_sample 867


title: SM-GE5US_S368_E1-50


title: HS_M1_1_sample 869


title: HS_M1_1_sample 863


title: Chip91484_r36_c51_Treated

description: Chip91484_r36_c51_Treated_CTTCGGAATAA-AAGAGGCA


title: Chip91484_r36_c50_Treated

description: Chip91484_r36_c50_Treated_CTTGAGAGTAT-AAGAGGCA


title: MM_M1_1_sample 2889


title: HS_M1_1_sample 862


title: MM_M1_1_sample 2888


title: MM_M1_1_sample 2891


title: Chip91484_r36_c63_Untreated

description: Chip91484_r36_c63_Untreated_CTCCATCTGCG-AAGAGGCA


title: Chip91484_r36_c38_Untreated

description: Chip91484_r36_c38_Untreated_CTGGATGATCG-AAGAGGCA


title: MM_M1_1_sample 2887


title: HS_M1_1_sample 865


title: MM_M1_1_sample 2890


title: SM-GE5US_S351_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: HS_M1_1_sample 861


title: SM-GE5US_S353_E1-50


title: HS_M1_1_sample 860


title: SM-GE5US_S350_E1-50


title: HS_M1_1_sample 858


title: Chip91484_r36_c35_Treated

description: Chip91484_r36_c35_Treated_GAACCTCTATG-AAGAGGCA


title: Chip91484_r36_c12_Untreated

description: Chip91484_r36_c12_Untreated_CTCCTAACGCG-AAGAGGCA


title: HS_M1_1_sample 857


title: SM-GE5US_S244_E1-50


title: MM_M1_1_sample 2885


title: Chip91484_r36_c0_Treated

description: Chip91484_r36_c0_Treated_CTTGAATTCAG-AAGAGGCA


title: SM-GE5US_S160_E1-50


title: MM_M1_1_sample 2883


title: HS_M1_1_sample 856


title: SM-GE5US_S247_E1-50


title: MM_M1_1_sample 2882


title: HS_M1_1_sample 854


title: SM-GE5UR_S366_E1-50


title: Chip91484_r35_c67_Untreated

description: Chip91484_r35_c67_Untreated_CTGCAATCGTA-AAGAGGCA


title: MM_M1_1_sample 2886


title: MM_M1_1_sample 2880


title: MM_M1_1_sample 2884


title: MM_M1_1_sample 2881


title: Chip91484_r35_c65_Untreated

description: Chip91484_r35_c65_Untreated_CTGAGGTAGAC-AAGAGGCA


title: HS_M1_1_sample 853


title: HS_M1_1_sample 859


title: HS_M1_1_sample 852


title: Chip91484_r35_c68_Untreated

description: Chip91484_r35_c68_Untreated_CTGCATGCTTG-AAGAGGCA


title: SM-GE5UR_S181_E1-50


title: HS_M1_1_sample 855


title: SM-GE5UR_S330_E1-50


title: Chip91484_r35_c57_Treated

description: Chip91484_r35_c57_Treated_GAACCAATATC-AAGAGGCA


title: Chip91484_r36_c24_Treated

description: Chip91484_r36_c24_Treated_GAACCTCTTAT-AAGAGGCA


title: SM-GE5UR_S014_E1-50

value: 57 days

value: GU


title: SM-GE5UR_S247_E1-50


title: HS_M1_1_sample 850


title: MM_M1_1_sample 2879


title: SM-GE5UR_S314_E1-50


title: Chip91484_r35_c64_Untreated

description: Chip91484_r35_c64_Untreated_CTGACCTGCGA-AAGAGGCA


title: MM_M1_1_sample 2878


title: Chip91484_r35_c58_Treated

description: Chip91484_r35_c58_Treated_GAACCAGCTTG-AAGAGGCA


title: MM_M1_1_sample 2877


title: HS_M1_1_sample 851


title: MM_M1_1_sample 2876


title: Chip91484_r35_c34_Treated

description: Chip91484_r35_c34_Treated_CTTCATGCGTA-AAGAGGCA


title: Chip91484_r35_c4_Treated

description: Chip91484_r35_c4_Treated_GAACCATGAAT-AAGAGGCA


title: HS_M1_1_sample 848


title: SM-GE5V6_S362_E1-50


title: Chip91484_r35_c3_Treated

description: Chip91484_r35_c3_Treated_GAACCATCGCG-AAGAGGCA


title: HS_M1_1_sample 847


title: SM-GE5UR_S002_E1-50


title: MM_M1_1_sample 2873


title: Chip91484_r35_c26_Treated

description: Chip91484_r35_c26_Treated_CTTCGCGTATA-AAGAGGCA


title: MM_M1_1_sample 2874


title: HS_M1_1_sample 849


title: MM_M1_1_sample 2872


title: MM_M1_1_sample 2871


title: HS_M1_1_sample 844


title: SM-GE5V6_S360_E1-50


title: MM_M1_1_sample 2870


title: SM-GE5V6_S361_E1-50

value: Car3 2


title: HS_M1_1_sample 845


title: SM-GE5V6_S368_E1-50


title: Chip91484_r35_c25_Treated

description: Chip91484_r35_c25_Treated_CTTCGACTTCG-AAGAGGCA


title: Chip91484_r35_c13_Untreated

description: Chip91484_r35_c13_Untreated_CTGCCGTTACG-AAGAGGCA


title: SM-GE5V6_S365_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: MM_M1_1_sample 2869


title: HS_M1_1_sample 846


title: HS_M1_1_sample 843


title: Chip91484_r34_c69_Untreated

description: Chip91484_r34_c69_Untreated_CTAATTCCTTA-AAGAGGCA


title: MM_M1_1_sample 2868


title: SM-GE5V6_S354_E1-50


title: MM_M1_1_sample 2875


title: SM-GE5V6_S357_E1-50


title: SM-GE5V6_S353_E1-50


title: Chip91484_r34_c68_Untreated

description: Chip91484_r34_c68_Untreated_CTATATCATGA-AAGAGGCA


title: HS_M1_1_sample 840


title: SM-GE5V6_S342_E1-50


title: Chip91484_r34_c61_Untreated

description: Chip91484_r34_c61_Untreated_CTAGGTTCTCA-AAGAGGCA


title: HS_M1_1_sample 842


title: MM_M1_1_sample 2866


title: HS_M1_1_sample 841


title: SM-GE5V6_S347_E1-50


title: Chip91484_r34_c62_Untreated

description: Chip91484_r34_c62_Untreated_CTATCAGCATC-AAGAGGCA


title: Chip91484_r34_c67_Untreated

description: Chip91484_r34_c67_Untreated_CTAGTAACCTG-AAGAGGCA


title: HS_M1_1_sample 839


title: HS_M1_1_sample 838


title: MM_M1_1_sample 2864


title: MM_M1_1_sample 2865


title: SM-GE5V6_S339_E1-50


title: MM_M1_1_sample 2867


title: HS_M1_1_sample 837


title: Chip91484_r34_c56_Treated

description: Chip91484_r34_c56_Treated_CTTATAGGCTA-AAGAGGCA


title: Chip91484_r34_c57_Treated

description: Chip91484_r34_c57_Treated_CTGGTCTATTG-AAGAGGCA


title: HS_M1_1_sample 836


title: MM_M1_1_sample 2863


title: Chip91484_r34_c50_Treated

description: Chip91484_r34_c50_Treated_CTTATATGCGC-AAGAGGCA


title: MM_M1_1_sample 2861


title: Chip91484_r34_c11_Treated

description: Chip91484_r34_c11_Treated_CTTCATGGTAG-AAGAGGCA


title: SM-GE5V6_S338_E1-50


title: SM-GE5V6_S331_E1-50


title: Chip91484_r34_c24_Treated

description: Chip91484_r34_c24_Treated_CTTGGCCTGGT-AAGAGGCA


title: Chip91484_r33_c9_Treated

description: Chip91484_r33_c9_Treated_CTTGCTCCAGG-AAGAGGCA


title: SM-GE5V6_S334_E1-50


title: HS_M1_1_sample 834


title: MM_M1_1_sample 2860


title: SM-GE5V6_S272_E1-50


title: SM-GE5V6_S330_E1-50


title: HS_M1_1_sample 835


title: MM_M1_1_sample 2858


title: SM-GE5V6_S267_E1-50


title: HS_M1_1_sample 832


title: HS_M1_1_sample 833


title: Chip91484_r33_c66_Untreated

description: Chip91484_r33_c66_Untreated_CTCGGTAGAGA-AAGAGGCA


title: MM_M1_1_sample 2857


title: MM_M1_1_sample 2862


title: SM-GE5V6_S237_E1-50


title: SM-GE5V6_S259_E1-50


title: MM_M1_1_sample 2856


title: Chip91484_r33_c55_Treated

description: Chip91484_r33_c55_Treated_CTTGCTAACCG-AAGAGGCA


title: HS_M1_1_sample 831


title: MM_M1_1_sample 2859


title: HS_M1_1_sample 830


title: HS_M1_1_sample 829


title: SM-GE5V6_S233_E1-50


title: SM-GE5V6_S263_E1-50


title: SM-GE5V6_S232_E1-50


title: Chip91484_r33_c67_Untreated

description: Chip91484_r33_c67_Untreated_CTCGTTATACT-AAGAGGCA


title: Chip91484_r33_c45_Untreated

description: Chip91484_r33_c45_Untreated_CTAACGGTCAA-AAGAGGCA


title: Chip91484_r33_c56_Treated

description: Chip91484_r33_c56_Treated_CTTGCTATAAT-AAGAGGCA


title: MM_M1_1_sample 2855


title: Chip91484_r33_c48_Treated

description: Chip91484_r33_c48_Treated_CTTGCCTTCAT-AAGAGGCA


title: MM_M1_1_sample 2854


title: HS_M1_1_sample 828


title: HS_M1_1_sample 827


title: SM-GE5V6_S216_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz

value: 55 days


title: HS_M1_1_sample 825


title: Chip91484_r33_c23_Untreated

description: Chip91484_r33_c23_Untreated_CTCTCGCTGCC-AAGAGGCA


title: Chip91484_r33_c41_Untreated

description: Chip91484_r33_c41_Untreated_CTACGATATTC-AAGAGGCA


title: HS_M1_1_sample 826


title: MM_M1_1_sample 2853


title: Chip91484_r33_c20_Untreated

description: Chip91484_r33_c20_Untreated_CTCTGGTATCA-AAGAGGCA


title: MM_M1_1_sample 2852


title: SM-GE5V6_S002_E1-50


title: SM-GE5V6_S122_E1-50

value: Car3 8


title: Chip91484_r33_c38_Untreated

description: Chip91484_r33_c38_Untreated_CTAGGTATGCG-AAGAGGCA


title: SM-GE5V6_S215_E1-50

value: F


title: HS_M1_1_sample 822


title: MM_M1_1_sample 2851


title: HS_M1_1_sample 821


title: SM-GE5V5_S335_E1-50


title: MM_M1_1_sample 2850


title: MM_M1_1_sample 2846


title: SM-GE5V5_S307_E1-50


title: Chip91484_r33_c13_Untreated

description: Chip91484_r33_c13_Untreated_CTCTGGACTTC-AAGAGGCA


title: HS_M1_1_sample 824


title: HS_M1_1_sample 823


title: SM-GE5V6_S105_E1-50


title: Chip91484_r33_c12_Untreated

description: Chip91484_r33_c12_Untreated_CTCTCTAAGTC-AAGAGGCA


title: Chip91484_r33_c17_Untreated

description: Chip91484_r33_c17_Untreated_CTCTCCGGAAC-AAGAGGCA


title: MM_M1_1_sample 2848


title: HS_M1_1_sample 818


title: Chip91484_r33_c16_Untreated

description: Chip91484_r33_c16_Untreated_CTCTACCGTTC-AAGAGGCA


title: SM-GE5V5_S331_E1-50


title: Chip91484_r33_c10_Treated

description: Chip91484_r33_c10_Treated_CTTGCTGCCGA-AAGAGGCA


title: HS_M1_1_sample 817


title: MM_M1_1_sample 2847


title: Chip91484_r32_c67_Untreated

description: Chip91484_r32_c67_Untreated_CGTTGGAACGT-AAGAGGCA


title: Chip91484_r33_c15_Untreated

description: Chip91484_r33_c15_Untreated_CTCTAAGTCAA-AAGAGGCA


title: MM_M1_1_sample 2841


title: HS_M1_1_sample 820


title: Chip91484_r32_c6_Treated

description: Chip91484_r32_c6_Treated_CTGGCTTAACT-AAGAGGCA


title: MM_M1_1_sample 2840


title: MM_M1_1_sample 2839


title: SM-GE5V5_S215_E1-50


title: SM-GE5V5_S302_E1-50


title: HS_M1_1_sample 819


title: MM_M1_1_sample 2845


title: MM_M1_1_sample 2849


title: MM_M1_1_sample 2844


title: MM_M1_1_sample 2843


title: SM-GE5V5_S300_E1-50


title: Chip91484_r32_c47_Untreated

description: Chip91484_r32_c47_Untreated_CTCGAGCTGAA-AAGAGGCA


title: SM-GE5V5_S240_E1-50


title: Chip91484_r32_c56_Treated

description: Chip91484_r32_c56_Treated_CTGGTAATCAG-AAGAGGCA


title: SM-GE5V5_S219_E1-50


title: HS_M1_1_sample 814


title: MM_M1_1_sample 2838


title: Chip91484_r32_c42_Untreated

description: Chip91484_r32_c42_Untreated_CTCGCAGTAAT-AAGAGGCA


title: HS_M1_1_sample 815


title: SM-GE5V5_S301_E1-50


title: Chip91484_r32_c46_Untreated

description: Chip91484_r32_c46_Untreated_CTCCTTACCAT-AAGAGGCA


title: HS_M1_1_sample 816


title: HS_M1_1_sample 812


title: SM-GE5V5_S211_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: SM-GE5V5_S133_E1-50


title: MM_M1_1_sample 2837


title: HS_M1_1_sample 811


title: MM_M1_1_sample 2836


title: Chip91484_r32_c4_Treated

description: Chip91484_r32_c4_Treated_CTGGCGTTAGA-AAGAGGCA


title: SM-GE5V5_S126_E1-50


title: MM_M1_1_sample 2835


title: HS_M1_1_sample 813


title: SM-GE5V5_S124_E1-50


title: HS_M1_1_sample 810


title: MM_M1_1_sample 2834


title: Chip91484_r32_c39_Untreated

description: Chip91484_r32_c39_Untreated_CTCCTGATGAT-AAGAGGCA


title: HS_M1_1_sample 809


title: Chip91484_r32_c14_Untreated

description: Chip91484_r32_c14_Untreated_CTAACCATTCA-AAGAGGCA


title: SM-GE5V5_S035_E1-50


title: Chip91484_r32_c32_Treated

description: Chip91484_r32_c32_Treated_CTTGCGGATCT-AAGAGGCA


title: SM-GE5VD_S146_E1-50


title: SM-GE5V5_S011_E1-50


title: Chip91484_r32_c22_Untreated

description: Chip91484_r32_c22_Untreated_CGTTGAGTTCG-AAGAGGCA


title: HS_M1_1_sample 807


title: SM-GE5VD_S162_E1-50


title: MM_M1_1_sample 2832


title: MM_M1_1_sample 2830


title: Chip91484_r32_c15_Untreated

description: Chip91484_r32_c15_Untreated_CGTTGAGACCA-AAGAGGCA


title: SM-GE5VD_S151_E1-50


title: MM_M1_1_sample 2831


title: HS_M1_1_sample 805


title: HS_M1_1_sample 808


title: MM_M1_1_sample 2833


title: HS_M1_1_sample 804


title: SM-GE5VD_S140_E1-50


title: MM_M1_1_sample 2829


title: Chip91484_r31_c68_Untreated

description: Chip91484_r31_c68_Untreated_CGCCTCAGGAG-AAGAGGCA


title: Chip91484_r31_c67_Untreated

description: Chip91484_r31_c67_Untreated_CGCCTCAATCC-AAGAGGCA


title: HS_M1_1_sample 803


title: HS_M1_1_sample 802


title: MM_M1_1_sample 2828


title: SM-GE5VD_S125_E1-50

value: Car3 7


title: SM-GE5VD_S056_E1-50

value: RFP-positive


title: Chip91484_r31_c63_Untreated

description: Chip91484_r31_c63_Untreated_CGCCAACCTCG-AAGAGGCA


title: MM_M1_1_sample 2827


title: Chip91484_r31_c58_Treated

description: Chip91484_r31_c58_Treated_CGTTAGTTCTA-AAGAGGCA


title: HS_M1_1_sample 801


title: SM-GE5VC_S358_E1-50


title: MM_M1_1_sample 2826


title: SM-GE5VD_S043_E1-50


title: HS_M1_1_sample 800


title: MM_M1_1_sample 2825


title: Chip91484_r31_c4_Treated

description: Chip91484_r31_c4_Treated_CGTTATCCTTA-AAGAGGCA


title: HS_M1_1_sample 799


title: HS_M1_1_sample 798


title: SM-GE5VC_S353_E1-50


title: MM_M1_1_sample 2823


title: SM-GE5VC_S355_E1-50


title: HS_M1_1_sample 806


title: SM-GE5VC_S347_E1-50


title: Chip91484_r31_c31_Treated

description: Chip91484_r31_c31_Treated_CGGTTAATGAG-AAGAGGCA


title: Chip91484_r31_c39_Untreated

description: Chip91484_r31_c39_Untreated_CCTTGATCATT-AAGAGGCA


title: HS_M1_1_sample 797


title: MM_M1_1_sample 2824


title: Chip91484_r31_c34_Treated

description: Chip91484_r31_c34_Treated_CGGTCAATTCC-AAGAGGCA


title: MM_M1_1_sample 2822


title: HS_M1_1_sample 796


title: Chip91484_r31_c35_Treated

description: Chip91484_r31_c35_Treated_CGGTCGTTAGT-AAGAGGCA


title: MM_M1_1_sample 2821


title: SM-GE5VC_S339_E1-50


title: Chip91484_r31_c29_Treated

description: Chip91484_r31_c29_Treated_CGGTCGGACTC-AAGAGGCA


title: Chip91484_r31_c28_Treated

description: Chip91484_r31_c28_Treated_CGGTCAATCTT-AAGAGGCA


title: HS_M1_1_sample 794


title: SM-GE5VC_S335_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: HS_M1_1_sample 793


title: SM-GE5VC_S330_E1-50


title: SM-GE5VC_S326_E1-50


title: MM_M1_1_sample 2820


title: MM_M1_1_sample 2819


title: Chip91484_r30_c64_Untreated

description: Chip91484_r30_c64_Untreated_CCTTAAGTTGA-AAGAGGCA


title: SM-GE5VC_S160_E1-50


title: MM_M1_1_sample 2817


title: Chip91484_r30_c62_Untreated

description: Chip91484_r30_c62_Untreated_CCTTCGATCCA-AAGAGGCA


title: MM_M1_1_sample 2818


title: HS_M1_1_sample 791


title: Chip91484_r30_c56_Treated

description: Chip91484_r30_c56_Treated_CGGTATCTTAA-AAGAGGCA


title: MM_M1_1_sample 2816


title: HS_M1_1_sample 790


title: Chip91484_r31_c1_Treated

description: Chip91484_r31_c1_Treated_CGTTCGGTCAA-AAGAGGCA


title: HS_M1_1_sample 795


title: SM-GE5VC_S134_E1-50


title: Chip91484_r30_c55_Treated

description: Chip91484_r30_c55_Treated_CGGTATCCTGC-AAGAGGCA


title: HS_M1_1_sample 789


title: MM_M1_1_sample 2814


title: HS_M1_1_sample 788


title: Chip91484_r30_c46_Untreated

description: Chip91484_r30_c46_Untreated_CGATTGCTGGC-AAGAGGCA


title: MM_M1_1_sample 2815


title: HS_M1_1_sample 792


title: MM_M1_1_sample 2813


title: HS_M1_1_sample 787


title: SM-GE5VC_S037_E1-50


title: SM-GE5VC_S056_E1-50


title: SM-GE5VC_S149_E1-50


title: Chip91484_r30_c35_Treated

description: Chip91484_r30_c35_Treated_CGTCTTACTTC-AAGAGGCA


title: HS_M1_1_sample 786


title: Chip91484_r30_c49_Treated

description: Chip91484_r30_c49_Treated_CGGTATATGCT-AAGAGGCA


title: SM-GE5VC_S126_E1-50


title: MM_M1_1_sample 2811


title: SM-GE5VC_S034_E1-50


title: MM_M1_1_sample 2810


title: Chip91484_r30_c21_Untreated

description: Chip91484_r30_c21_Untreated_CCTTCGATTGC-AAGAGGCA


title: MM_M1_1_sample 2809


title: Chip91484_r30_c33_Treated

description: Chip91484_r30_c33_Treated_CGTCGTTCTCA-AAGAGGCA


title: SM-GE5VB_S346_E1-50


title: Chip91484_r30_c10_Treated

description: Chip91484_r30_c10_Treated_CGGTATTATTG-AAGAGGCA


title: HS_M1_1_sample 785


title: MM_M1_1_sample 2808


title: HS_M1_1_sample 784


title: SM-GE5VB_S244_E1-50


title: SM-GE5VB_S247_E1-50


title: Chip91484_r30_c31_Treated

description: Chip91484_r30_c31_Treated_CGTTAGATCGG-AAGAGGCA


title: HS_M1_1_sample 782


title: HS_M1_1_sample 783


title: HS_M1_1_sample 781


title: Chip91484_r3_c71_Untreated

description: Chip91484_r3_c71_Untreated_AACCTAGAGGC-AAGAGGCA


title: MM_M1_1_sample 2812


title: SM-GE5VB_S148_E1-50


title: MM_M1_1_sample 2807


title: Chip91484_r3_c8_Treated

description: Chip91484_r3_c8_Treated_AACGGAGTATC-AAGAGGCA


title: HS_M1_1_sample 779


title: HS_M1_1_sample 776


title: SM-GE5VB_S145_E1-50


title: MM_M1_1_sample 2806


title: Chip91484_r3_c61_Untreated

description: Chip91484_r3_c61_Untreated_AACCTCAACGA-AAGAGGCA


title: MM_M1_1_sample 2803


title: SM-GE5VB_S134_E1-50


title: SM-GE5VB_S142_E1-50


title: MM_M1_1_sample 2805


title: Chip91484_r3_c68_Untreated

description: Chip91484_r3_c68_Untreated_AACCTCAGAAT-AAGAGGCA


title: Chip91484_r3_c39_Untreated

description: Chip91484_r3_c39_Untreated_AACCATAAGTA-AAGAGGCA


title: HS_M1_1_sample 780


title: MM_M1_1_sample 2800


title: HS_M1_1_sample 774


title: SM-GE5VB_S028_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz

value: 70 days

value: AUD


title: MM_M1_1_sample 2804

value: brain

value: M


title: MM_M1_1_sample 2799


title: Chip91484_r3_c63_Untreated

description: Chip91484_r3_c63_Untreated_AACCTAACTCA-AAGAGGCA

value: Invasive Ductal Carcinoma


title: HS_M1_1_sample 773

value: Brain


title: HS_M1_1_sample 778


title: SM-GE5VB_S133_E1-50

value: left


title: HS_M1_1_sample 777


title: Chip91484_r3_c46_Untreated

description: Chip91484_r3_c46_Untreated_AACCATAGAAC-AAGAGGCA


title: MM_M1_1_sample 2798


title: MM_M1_1_sample 2802


title: SM-GE5VB_S006_E1-50

value: Car3 1


title: Chip91484_r3_c35_Treated

description: Chip91484_r3_c35_Treated_AACGAGTATAT-AAGAGGCA


title: MM_M1_1_sample 2801


title: HS_M1_1_sample 775


title: SM-GE5VB_S131_E1-50

value: Car3 6


title: SM-GE5VB_S053_E1-50


title: Chip91484_r3_c27_Treated

description: Chip91484_r3_c27_Treated_AACGAGAGGAA-AAGAGGCA


title: SM-GE5VB_S071_E1-50

value: 57 days

value: right


title: MM_M1_1_sample 2795


title: HS_M1_1_sample 770


title: Chip91484_r3_c0_Treated

description: Chip91484_r3_c0_Treated_AACGGACCGAA-AAGAGGCA


title: HS_M1_1_sample 772


title: MM_M1_1_sample 2797


title: Chip91484_r29_c69_Untreated

description: Chip91484_r29_c69_Untreated_CGAGACTGACT-AAGAGGCA


title: SM-GE5VB_S002_E1-50


title: SM-GE5VA_S214_E1-50


title: MM_M1_1_sample 2796


title: Chip91484_r29_c66_Untreated

description: Chip91484_r29_c66_Untreated_CGATAGAGTCG-AAGAGGCA


title: MM_M1_1_sample 2792


title: SM-GE5VA_S331_E1-50

value: GU


title: Chip91484_r29_c65_Untreated

description: Chip91484_r29_c65_Untreated_CGAGTAACTTC-AAGAGGCA


title: HS_M1_1_sample 769


title: SM-GE5VB_S017_E1-50


title: HS_M1_1_sample 766


title: MM_M1_1_sample 2794


title: Chip91484_r29_c48_Treated

description: Chip91484_r29_c48_Treated_CGTATTCGAGA-AAGAGGCA


title: Chip91484_r29_c62_Untreated

description: Chip91484_r29_c62_Untreated_CGATGCGTCCT-AAGAGGCA


title: HS_M1_1_sample 768


title: HS_M1_1_sample 771


title: Chip91484_r29_c61_Untreated

description: Chip91484_r29_c61_Untreated_CGATCCGACGC-AAGAGGCA


title: MM_M1_1_sample 2793


title: HS_M1_1_sample 764


title: HS_M1_1_sample 767


title: Chip91484_r29_c44_Untreated

description: Chip91484_r29_c44_Untreated_CCTTCAGCTCT-AAGAGGCA


title: SM-GE5VA_S311_E1-50


title: SM-GE5VA_S198_E1-50


title: Chip91484_r29_c50_Treated

description: Chip91484_r29_c50_Treated_CGTCGGAGGTC-AAGAGGCA


title: HS_M1_1_sample 763


title: Chip91484_r29_c41_Untreated

description: Chip91484_r29_c41_Untreated_CCTTAATTAGG-AAGAGGCA


title: MM_M1_1_sample 2791


title: Chip91484_r29_c35_Treated

description: Chip91484_r29_c35_Treated_CGGCTGGCGCG-AAGAGGCA


title: HS_M1_1_sample 765


title: SM-GE5VA_S168_E1-50


title: MM_M1_1_sample 2790


title: SM-GE5VA_S099_E1-50


title: SM-GE5VA_S166_E1-50


title: HS_M1_1_sample 760


title: MM_M1_1_sample 2789


title: SM-GE5VA_S158_E1-50


title: MM_M1_1_sample 2788


title: HS_M1_1_sample 759


title: HS_M1_1_sample 762


title: SM-GE5VA_S116_E1-50

value: Car3 5


title: SM-GE5VA_S118_E1-50

value: Car3 2


title: MM_M1_1_sample 2785


title: MM_M1_1_sample 2784


title: MM_M1_1_sample 2783


title: Chip91484_r29_c17_Untreated

description: Chip91484_r29_c17_Untreated_CGATTGGTAAC-AAGAGGCA


title: SM-GE5VA_S098_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: MM_M1_1_sample 2787


title: SM-GE5VA_S061_E1-50


title: MM_M1_1_sample 2786


title: HS_M1_1_sample 756


title: Chip91484_r29_c32_Treated

description: Chip91484_r29_c32_Treated_CGGTAGTTATG-AAGAGGCA


title: SM-GE5VA_S055_E1-50


title: HS_M1_1_sample 761


title: Chip91484_r28_c70_Untreated

description: Chip91484_r28_c70_Untreated_CCTGAATAGCA-AAGAGGCA


title: MM_M1_1_sample 2780


title: HS_M1_1_sample 758


title: Chip91484_r29_c22_Untreated

description: Chip91484_r29_c22_Untreated_CGATTCCTATG-AAGAGGCA


title: Chip91484_r29_c30_Treated

description: Chip91484_r29_c30_Treated_CGGCTTGAGTC-AAGAGGCA


title: SM-GE5VA_S092_E1-50

value: F

value: 58 days


title: HS_M1_1_sample 753


title: SM-GE5VA_S023_E1-50

value: RFP-positive


title: SM-GE5VA_S063_E1-50


title: MM_M1_1_sample 2781


title: Chip91484_r28_c8_Treated

description: Chip91484_r28_c8_Treated_CGGCGGTAAGT-AAGAGGCA


title: Chip91484_r29_c12_Untreated

description: Chip91484_r29_c12_Untreated_CGCAACTCCGG-AAGAGGCA


title: HS_M1_1_sample 757


title: Chip91484_r28_c58_Treated

description: Chip91484_r28_c58_Treated_CGGAGTCTTCA-AAGAGGCA


title: SM-GE5VA_S021_E1-50

value: 70 days


title: HS_M1_1_sample 751


title: Chip91484_r29_c42_Untreated

description: Chip91484_r29_c42_Untreated_CCTTACGGACT-AAGAGGCA


title: MM_M1_1_sample 2782


title: MM_M1_1_sample 2776


title: HS_M1_1_sample 755


title: SM-GE5VA_S013_E1-50

value: AUD


title: Chip91484_r28_c47_Untreated

description: Chip91484_r28_c47_Untreated_CGAGCGTAGCA-AAGAGGCA


title: MM_M1_1_sample 2779

value: brain


title: HS_M1_1_sample 754

value: M


title: MM_M1_1_sample 2774


title: MM_M1_1_sample 2773


title: SM-GE5VA_S048_E1-50

value: 55 days


title: SM-GE5VA_S024_E1-50


title: HS_M1_1_sample 747

value: Brain


title: Chip91484_r28_c57_Treated

description: Chip91484_r28_c57_Treated_CGGAGTAACTA-AAGAGGCA

value: Invasive Ductal Carcinoma


title: MM_M1_1_sample 2772


title: Chip91484_r28_c37_Untreated

description: Chip91484_r28_c37_Untreated_CGATAGGTTAG-AAGAGGCA


title: MM_M1_1_sample 2778


title: HS_M1_1_sample 752


title: MM_M1_1_sample 2777


title: MM_M1_1_sample 2771


title: SM-GE5VI_S338_E1-50

value: left

value: Car3 1


title: MM_M1_1_sample 2775


title: Chip91484_r28_c51_Treated

description: Chip91484_r28_c51_Treated_CGGAGTACGAC-AAGAGGCA


title: HS_M1_1_sample 749


title: SM-GE5VA_S005_E1-50

value: Car3 6


title: Chip91484_r28_c59_Treated

description: Chip91484_r28_c59_Treated_CGGATGGTTAG-AAGAGGCA


title: HS_M1_1_sample 750


title: Chip91484_r28_c43_Untreated

description: Chip91484_r28_c43_Untreated_CGATATAACCT-AAGAGGCA


title: SM-GE5VI_S316_E1-50

value: right


title: MM_M1_1_sample 2769


title: HS_M1_1_sample 746


title: HS_M1_1_sample 748


title: Chip91484_r28_c39_Untreated

description: Chip91484_r28_c39_Untreated_CGACTGCCAAG-AAGAGGCA


title: SM-GE5VI_S342_E1-50


title: SM-GE5VI_S346_E1-50


title: SM-GE5VI_S349_E1-50


title: Chip91484_r28_c33_Treated

description: Chip91484_r28_c33_Treated_CGTAGGTAGTT-AAGAGGCA


title: HS_M1_1_sample 745


title: Chip91484_r28_c20_Untreated

description: Chip91484_r28_c20_Untreated_CCTGGCAAGTT-AAGAGGCA


title: Chip91484_r28_c29_Treated

description: Chip91484_r28_c29_Treated_CGTATCTCTAC-AAGAGGCA


title: HS_M1_1_sample 744


title: MM_M1_1_sample 2768


title: MM_M1_1_sample 2767


title: HS_M1_1_sample 741


title: Chip91484_r28_c21_Untreated

description: Chip91484_r28_c21_Untreated_CCTGACTGATC-AAGAGGCA


title: Chip91484_r28_c2_Treated

description: Chip91484_r28_c2_Treated_CGGCGTAGATT-AAGAGGCA


title: Chip91484_r28_c27_Treated

description: Chip91484_r28_c27_Treated_CGTAGGTCATC-AAGAGGCA


title: HS_M1_1_sample 743


title: MM_M1_1_sample 2766


title: MM_M1_1_sample 2770


title: HS_M1_1_sample 740


title: HS_M1_1_sample 742


title: SM-GE5VI_S222_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: Chip91484_r27_c8_Treated

description: Chip91484_r27_c8_Treated_CGTAGGCAATA-AAGAGGCA


title: MM_M1_1_sample 2764


title: Chip91484_r28_c11_Treated

description: Chip91484_r28_c11_Treated_CGGCAGTTGCG-AAGAGGCA


title: MM_M1_1_sample 2765


title: SM-GE5VI_S240_E1-50


title: HS_M1_1_sample 739


title: SM-GE5VI_S220_E1-50


title: SM-GE5VI_S224_E1-50


title: SM-GE5VI_S214_E1-50


title: Chip91484_r27_c68_Untreated

description: Chip91484_r27_c68_Untreated_CGACTAGATTG-AAGAGGCA


title: MM_M1_1_sample 2763


title: HS_M1_1_sample 738


title: Chip91484_r27_c61_Untreated

description: Chip91484_r27_c61_Untreated_CGACGTCCGTT-AAGAGGCA


title: MM_M1_1_sample 2761


title: HS_M1_1_sample 736


title: HS_M1_1_sample 737


title: SM-GE5VI_S195_E1-50


title: SM-GE5VI_S105_E1-50


title: MM_M1_1_sample 2760


title: HS_M1_1_sample 735


title: MM_M1_1_sample 2759


title: Chip91484_r27_c58_Treated

description: Chip91484_r27_c58_Treated_CGGTTCAACTT-AAGAGGCA


title: MM_M1_1_sample 2758


title: Chip91484_r27_c51_Treated

description: Chip91484_r27_c51_Treated_CGGTTATCAAC-AAGAGGCA


title: Chip91484_r27_c42_Untreated

description: Chip91484_r27_c42_Untreated_CCTCTCGTCTT-AAGAGGCA


title: SM-GE5VI_S355_E1-50


title: HS_M1_1_sample 734


title: SM-GE5VI_S253_E1-50


title: Chip91484_r27_c48_Treated

description: Chip91484_r27_c48_Treated_CGGTTGCGGAA-AAGAGGCA


title: SM-GE5VI_S063_E1-50


title: Chip91484_r27_c38_Untreated

description: Chip91484_r27_c38_Untreated_CCTCTTAGGCT-AAGAGGCA


title: HS_M1_1_sample 732


title: SM-GE5VI_S099_E1-50


title: Chip91484_r27_c37_Untreated

description: Chip91484_r27_c37_Untreated_CCTCTGCAACG-AAGAGGCA


title: MM_M1_1_sample 2756


title: MM_M1_1_sample 2762


title: MM_M1_1_sample 2757


title: HS_M1_1_sample 731


title: HS_M1_1_sample 733


title: HS_M1_1_sample 729


title: SM-GE5VD_S222_E1-50

source_name: retroseq cells mapped to L2/3,L4,L5 IT subclass

value: 50 days

value: MOp

value: SSs

value: RV-dGdL-Cre


title: SM-GE5VD_S223_E1-50

value: F


title: SM-GE5VD_S224_E1-50

value: RFP-positive


title: SM-GE5VD_S225_E1-50


title: HS_M1_1_sample 728


title: Chip91484_r27_c36_Untreated

description: Chip91484_r27_c36_Untreated_CCTCTCGCGGA-AAGAGGCA


title: SM-GE5VD_S220_E1-50


title: Chip91484_r27_c28_Treated

description: Chip91484_r27_c28_Treated_CGCTCCGAACC-AAGAGGCA


title: SM-GE5VD_S221_E1-50


title: MM_M1_1_sample 2754


title: MM_M1_1_sample 2755


title: HS_M1_1_sample 730


title: HS_M1_1_sample 727


title: Chip91484_r27_c23_Untreated

description: Chip91484_r27_c23_Untreated_CGACCTTCATC-AAGAGGCA


title: MM_M1_1_sample 2751


title: SM-GE5VD_S218_E1-50


title: SM-GE5VD_S217_E1-50


title: Chip91484_r27_c17_Untreated

description: Chip91484_r27_c17_Untreated_CGACCTGGCTT-AAGAGGCA


title: HS_M1_1_sample 724


title: MM_M1_1_sample 2750


title: Chip91484_r26_c69_Untreated

description: Chip91484_r26_c69_Untreated_CCAGTACCTAT-AAGAGGCA


title: MM_M1_1_sample 2752


title: SM-GE8XN_S088_E1-50

value: 99 days

value: SSp

value: GFP-positive/RFP-positive

value: VISpl


title: Chip91484_r27_c26_Treated

description: Chip91484_r27_c26_Treated_CGGAGGTCGTA-AAGAGGCA


title: SM-GE5VD_S219_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: HS_M1_1_sample 723

value: M


title: Chip91484_r26_c66_Untreated

description: Chip91484_r26_c66_Untreated_CCATAACGAAT-AAGAGGCA


title: HS_M1_1_sample 725

value: Brain


title: SM-GE8XN_S087_E1-50


title: MM_M1_1_sample 2749

value: brain


title: MM_M1_1_sample 2748


title: Chip91484_r26_c59_Treated

description: Chip91484_r26_c59_Treated_CCGGTATCCAA-AAGAGGCA

value: Invasive Ductal Carcinoma


title: HS_M1_1_sample 726


title: Chip91484_r26_c51_Treated

description: Chip91484_r26_c51_Treated_CCGGAGATAGG-AAGAGGCA


title: MM_M1_1_sample 2747


title: HS_M1_1_sample 722


title: SM-GE8XN_S084_E1-50

value: left


title: MM_M1_1_sample 2753


title: SM-GE8XN_S085_E1-50


title: MM_M1_1_sample 2746


title: HS_M1_1_sample 721


title: HS_M1_1_sample 720


title: Chip91484_r26_c41_Untreated

description: Chip91484_r26_c41_Untreated_CCGAACGATGG-AAGAGGCA


title: MM_M1_1_sample 2745


title: MM_M1_1_sample 2744


title: SM-GE8XN_S083_E1-50


title: HS_M1_1_sample 718


title: Chip91484_r26_c38_Untreated

description: Chip91484_r26_c38_Untreated_CCGACCTACCT-AAGAGGCA


title: SM-GE8XN_S086_E1-50


title: MM_M1_1_sample 2743


title: SM-GE8XN_S081_E1-50


title: Chip91484_r26_c27_Treated

description: Chip91484_r26_c27_Treated_CCTCCGGTATG-AAGAGGCA


title: HS_M1_1_sample 717


title: MM_M1_1_sample 2742


title: SM-GE8XN_S080_E1-50


title: SM-GE8XN_S082_E1-50


title: Chip91484_r26_c58_Treated

description: Chip91484_r26_c58_Treated_CCGGCCTGCAG-AAGAGGCA


title: Chip91484_r26_c26_Treated

description: Chip91484_r26_c26_Treated_CCTCGTATTCG-AAGAGGCA


title: Chip91484_r26_c18_Untreated

description: Chip91484_r26_c18_Untreated_CCTCTCCATGA-AAGAGGCA


title: HS_M1_1_sample 719


title: HS_M1_1_sample 713


title: HS_M1_1_sample 715


title: SM-GE8XN_S077_E1-50


title: MM_M1_1_sample 2740


title: Chip91484_r26_c13_Untreated

description: Chip91484_r26_c13_Untreated_CCTCTCTACTA-AAGAGGCA


title: HS_M1_1_sample 716


title: SM-GE8XN_S079_E1-50


title: MM_M1_1_sample 2739


title: HS_M1_1_sample 714


title: Chip91484_r25_c64_Untreated

description: Chip91484_r25_c64_Untreated_CCATGATGACT-AAGAGGCA


title: SM-GE8XN_S078_E1-50


title: Chip91484_r25_c69_Untreated

description: Chip91484_r25_c69_Untreated_CCATGAAGGAC-AAGAGGCA


title: MM_M1_1_sample 2741


title: HS_M1_1_sample 712


title: MM_M1_1_sample 2736


title: SM-GE8XN_S076_E1-50


title: MM_M1_1_sample 2737


title: MM_M1_1_sample 2738


title: SM-GE8XN_S073_E1-50


title: HS_M1_1_sample 711


title: Chip91484_r25_c4_Treated

description: Chip91484_r25_c4_Treated_CCTCCGCATAG-AAGAGGCA


title: SM-GE8XN_S075_E1-50


title: Chip91484_r25_c47_Untreated

description: Chip91484_r25_c47_Untreated_CCAGTCATTCT-AAGAGGCA


title: MM_M1_1_sample 2735


title: HS_M1_1_sample 710


title: HS_M1_1_sample 709


title: MM_M1_1_sample 2734


title: Chip91484_r25_c37_Untreated

description: Chip91484_r25_c37_Untreated_CCATAACGCTC-AAGAGGCA


title: Chip91484_r25_c54_Treated

description: Chip91484_r25_c54_Treated_CCTCATCAGCG-AAGAGGCA


title: Chip91484_r25_c41_Untreated

description: Chip91484_r25_c41_Untreated_CCAGTATTGAG-AAGAGGCA


title: SM-GE8XN_S072_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: HS_M1_1_sample 707


title: SM-GE8XN_S074_E1-50


title: Chip91484_r25_c35_Treated

description: Chip91484_r25_c35_Treated_CCGGCTCATAA-AAGAGGCA


title: Chip91484_r25_c32_Treated

description: Chip91484_r25_c32_Treated_CCGGTTCTGCC-AAGAGGCA


title: MM_M1_1_sample 2731


title: HS_M1_1_sample 705


title: SM-GE8XN_S071_E1-50


title: MM_M1_1_sample 2733


title: HS_M1_1_sample 706


title: Chip91484_r25_c30_Treated

description: Chip91484_r25_c30_Treated_CCGGCTGGATT-AAGAGGCA


title: SM-GE8XN_S070_E1-50


title: MM_M1_1_sample 2730


title: HS_M1_1_sample 704


title: MM_M1_1_sample 2732


title: SM-GE8XN_S068_E1-50


title: SM-GE8XN_S069_E1-50


title: MM_M1_1_sample 2729


title: HS_M1_1_sample 708


title: SM-GE8XN_S067_E1-50


title: Chip91484_r24_c59_Treated

description: Chip91484_r24_c59_Treated_CCGCCTTCGAC-AAGAGGCA


title: MM_M1_1_sample 2728


title: HS_M1_1_sample 703


title: HS_M1_1_sample 702


title: SM-GE8XN_S065_E1-50


title: SM-GE8XN_S066_E1-50


title: MM_M1_1_sample 2727


title: HS_M1_1_sample 701


title: MM_M1_1_sample 2726


title: Chip91484_r24_c37_Untreated

description: Chip91484_r24_c37_Untreated_CCATTACGCAG-AAGAGGCA


title: Chip91484_r24_c6_Treated

description: Chip91484_r24_c6_Treated_CCGCGTCGGCG-AAGAGGCA


title: MM_M1_1_sample 2725


title: SM-GE8XM_S384_E1-50


title: SM-GE8XM_S383_E1-50


title: HS_M1_1_sample 700


title: Chip91484_r24_c28_Treated

description: Chip91484_r24_c28_Treated_CCTCAAGAATC-AAGAGGCA


title: MM_M1_1_sample 2723


title: Chip91484_r24_c58_Treated

description: Chip91484_r24_c58_Treated_CCGCCGGTCCA-AAGAGGCA


title: SM-GE8XM_S382_E1-50


title: HS_M1_1_sample 696


title: HS_M1_1_sample 698


title: MM_M1_1_sample 2722


title: Chip91484_r24_c19_Untreated

description: Chip91484_r24_c19_Untreated_CCAGGCCGTTG-AAGAGGCA


title: Chip91484_r24_c21_Untreated

description: Chip91484_r24_c21_Untreated_CCAGCGCGGAC-AAGAGGCA


title: SM-GE8XM_S381_E1-50


title: Chip91484_r24_c29_Treated

description: Chip91484_r24_c29_Treated_CCTCAGGAGAG-AAGAGGCA


title: HS_M1_1_sample 697


title: HS_M1_1_sample 694


title: Chip91484_r23_c6_Treated

description: Chip91484_r23_c6_Treated_CCTAGGACCAA-AAGAGGCA


title: Chip91484_r24_c15_Untreated

description: Chip91484_r24_c15_Untreated_CCAGCGCGTCA-AAGAGGCA


title: HS_M1_1_sample 695


title: MM_M1_1_sample 2718


title: HS_M1_1_sample 699


title: MM_M1_1_sample 2721


title: Chip91484_r24_c0_Treated

description: Chip91484_r24_c0_Treated_CCGCGCTCTTC-AAGAGGCA


title: SM-GE8XM_S380_E1-50


title: MM_M1_1_sample 2724


title: SM-GE8XM_S379_E1-50


title: SM-GE8XM_S378_E1-50


title: Chip91484_r23_c55_Treated

description: Chip91484_r23_c55_Treated_CCTATCATGCG-AAGAGGCA


title: HS_M1_1_sample 693


title: SM-GE8XM_S375_E1-50


title: HS_M1_1_sample 691


title: MM_M1_1_sample 2716


title: MM_M1_1_sample 2719


title: SM-GE8XM_S377_E1-50


title: Chip91484_r23_c31_Treated

description: Chip91484_r23_c31_Treated_CCGCCAAGTTC-AAGAGGCA


title: HS_M1_1_sample 692


title: SM-GE8XM_S376_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: Chip91484_r23_c58_Treated

description: Chip91484_r23_c58_Treated_CCTACGCGATA-AAGAGGCA


title: MM_M1_1_sample 2720


title: MM_M1_1_sample 2715


title: SM-GE8XM_S374_E1-50


title: MM_M1_1_sample 2717


title: HS_M1_1_sample 689


title: HS_M1_1_sample 688


title: Chip91484_r23_c30_Treated

description: Chip91484_r23_c30_Treated_CCGCATTAATT-AAGAGGCA


title: Chip91484_r23_c18_Untreated

description: Chip91484_r23_c18_Untreated_CCATCGTTAAC-AAGAGGCA


title: SM-GE8XM_S373_E1-50


title: MM_M1_1_sample 2711


title: HS_M1_1_sample 690


title: SM-GE8XM_S371_E1-50


title: Chip91484_r23_c44_Untreated

description: Chip91484_r23_c44_Untreated_CCAGCCTTAGA-AAGAGGCA


title: SM-GE8XM_S372_E1-50


title: Chip91484_r22_c56_Treated

description: Chip91484_r22_c56_Treated_CCGATGAGAGA-AAGAGGCA


title: MM_M1_1_sample 2710


title: MM_M1_1_sample 2714


title: MM_M1_1_sample 2712


title: Chip91484_r23_c20_Untreated

description: Chip91484_r23_c20_Untreated_CCATCTGATGG-AAGAGGCA


title: MM_M1_1_sample 2713


title: Chip91484_r22_c54_Treated

description: Chip91484_r22_c54_Treated_CCGAGGATAGC-AAGAGGCA


title: HS_M1_1_sample 687


title: HS_M1_1_sample 683


title: SM-GE8XM_S370_E1-50


title: HS_M1_1_sample 686


title: Chip91484_r23_c17_Untreated

description: Chip91484_r23_c17_Untreated_CCATCGCATAC-AAGAGGCA


title: HS_M1_1_sample 682


title: SM-GE8XM_S367_E1-50


title: MM_M1_1_sample 2707


title: HS_M1_1_sample 685


title: SM-GE8XM_S369_E1-50


title: MM_M1_1_sample 2706


title: HS_M1_1_sample 680


title: Chip91484_r22_c37_Untreated

description: Chip91484_r22_c37_Untreated_CCATATTACTC-AAGAGGCA


title: Chip91484_r22_c34_Treated

description: Chip91484_r22_c34_Treated_CCGTCCTATGC-AAGAGGCA


title: MM_M1_1_sample 2704


title: MM_M1_1_sample 2709


title: HS_M1_1_sample 684


title: Chip91484_r22_c16_Untreated

description: Chip91484_r22_c16_Untreated_CCAGAGTTATA-AAGAGGCA


title: HS_M1_1_sample 677


title: MM_M1_1_sample 2708


title: SM-GE8XM_S368_E1-50


title: Chip91484_r22_c53_Treated

description: Chip91484_r22_c53_Treated_CCGAGAGTCCT-AAGAGGCA


title: Chip91484_r21_c8_Treated

description: Chip91484_r21_c8_Treated_CCTAACTAATT-AAGAGGCA


title: MM_M1_1_sample 2705


title: SM-GE8XM_S361_E1-50


title: HS_M1_1_sample 676


title: SM-GE8XM_S363_E1-50


title: SM-GE8XM_S366_E1-50


title: Chip91484_r22_c46_Untreated

description: Chip91484_r22_c46_Untreated_CCATACTCTCC-AAGAGGCA


title: Chip91484_r21_c71_Untreated

description: Chip91484_r21_c71_Untreated_CAACCATACGA-AAGAGGCA


title: Chip91484_r22_c2_Neg

description: Chip91484_r22_c2_Neg_Ctrl_CCGCCAAGAAT-AAGAGGCA


title: SM-GE8XM_S365_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: HS_M1_1_sample 681


title: SM-GE8XM_S362_E1-50


title: SM-GE8XM_S364_E1-50


title: HS_M1_1_sample 678


title: HS_M1_1_sample 679


title: MM_M1_1_sample 2702


title: MM_M1_1_sample 2703


title: Chip91484_r21_c67_Untreated

description: Chip91484_r21_c67_Untreated_CAACCGACGCG-AAGAGGCA


title: HS_M1_1_sample 674


title: Chip91484_r21_c66_Untreated

description: Chip91484_r21_c66_Untreated_CAACCATCAAC-AAGAGGCA


title: SM-GE8XM_S278_E1-50


title: MM_M1_1_sample 2698


title: SM-GE8XM_S279_E1-50


title: MM_M1_1_sample 2701


title: SM-GE8XM_S280_E1-50


title: HS_M1_1_sample 675


title: HS_M1_1_sample 671


title: MM_M1_1_sample 2700


title: MM_M1_1_sample 2696


title: MM_M1_1_sample 2697


title: Chip91484_r21_c55_Treated

description: Chip91484_r21_c55_Treated_CCAATGCTATA-AAGAGGCA


title: MM_M1_1_sample 2695


title: MM_M1_1_sample 2699


title: SM-GE8XM_S277_E1-50


title: HS_M1_1_sample 673


title: HS_M1_1_sample 669


title: SM-GE8XM_S273_E1-50


title: Chip91484_r21_c62_Untreated

description: Chip91484_r21_c62_Untreated_CAACCGAGTCT-AAGAGGCA


title: Chip91484_r21_c50_Treated

description: Chip91484_r21_c50_Treated_CCAATGCTTAG-AAGAGGCA


title: MM_M1_1_sample 2694


title: SM-GE8XM_S276_E1-50


title: MM_M1_1_sample 2693


title: Chip91484_r21_c60_Untreated

description: Chip91484_r21_c60_Untreated_CAACCATATAT-AAGAGGCA


title: Chip91484_r21_c5_Treated

description: Chip91484_r21_c5_Treated_CCGTCCTCAGT-AAGAGGCA


title: SM-GE8XM_S275_E1-50


title: HS_M1_1_sample 672


title: HS_M1_1_sample 670


title: Chip91484_r21_c53_Treated

description: Chip91484_r21_c53_Treated_CCAATCCGATT-AAGAGGCA


title: SM-GE8XM_S274_E1-50


title: MM_M1_1_sample 2692


title: MM_M1_1_sample 2691


title: SM-GE8XM_S271_E1-50


title: Chip91484_r21_c25_Treated

description: Chip91484_r21_c25_Treated_CCGATACGTCA-AAGAGGCA


title: HS_M1_1_sample 668


title: HS_M1_1_sample 665


title: SM-GE8XM_S267_E1-50


title: SM-GE8XM_S269_E1-50


title: Chip91484_r21_c41_Untreated

description: Chip91484_r21_c41_Untreated_CCAGAACCATT-AAGAGGCA


title: HS_M1_1_sample 667


title: HS_M1_1_sample 666


title: HS_M1_1_sample 663


title: SM-GE8XM_S266_E1-50


title: Chip91484_r21_c1_Treated

description: Chip91484_r21_c1_Treated_CCGTTGGTATC-AAGAGGCA


title: SM-GE8XM_S270_E1-50


title: Chip91484_r20_c66_Untreated

description: Chip91484_r20_c66_Untreated_ATGAAGCTGAG-AAGAGGCA


title: Chip91484_r20_c62_Untreated

description: Chip91484_r20_c62_Untreated_ATGCGGTACTA-AAGAGGCA


title: MM_M1_1_sample 2690


title: MM_M1_1_sample 2685


title: Chip91484_r21_c23_Untreated

description: Chip91484_r21_c23_Untreated_CCATAGCCTCA-AAGAGGCA


title: SM-GE8XM_S268_E1-50


title: HS_M1_1_sample 664


title: SM-GE8XM_S263_E1-50


title: MM_M1_1_sample 2689


title: Chip91484_r21_c22_Untreated

description: Chip91484_r21_c22_Untreated_CCATACCGGAC-AAGAGGCA


title: SM-GE8XM_S272_E1-50


title: Chip91484_r20_c61_Untreated

description: Chip91484_r20_c61_Untreated_ATGCATCGGAT-AAGAGGCA


title: Chip91484_r20_c60_Untreated

description: Chip91484_r20_c60_Untreated_ATGAACCTCGT-AAGAGGCA


title: HS_M1_1_sample 657


title: SM-GE8XM_S261_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: Chip91484_r21_c2_Treated

description: Chip91484_r21_c2_Treated_CCTAACTTCAT-AAGAGGCA


title: MM_M1_1_sample 2688


title: Chip91484_r20_c44_Untreated

description: Chip91484_r20_c44_Untreated_CAACCGAACTT-AAGAGGCA


title: HS_M1_1_sample 662


title: MM_M1_1_sample 2687


title: HS_M1_1_sample 656


title: Chip91484_r20_c42_Untreated

description: Chip91484_r20_c42_Untreated_CAACCAGGCAG-AAGAGGCA


title: Chip91484_r20_c41_Untreated

description: Chip91484_r20_c41_Untreated_CAACCAGCCGT-AAGAGGCA


title: MM_M1_1_sample 2686


title: SM-GE8XM_S264_E1-50


title: HS_M1_1_sample 661


title: SM-GE8XM_S258_E1-50


title: HS_M1_1_sample 659


title: SM-GE8XM_S262_E1-50


title: MM_M1_1_sample 2683


title: SM-GE8XM_S257_E1-50


title: MM_M1_1_sample 2684


title: HS_M1_1_sample 660


title: HS_M1_1_sample 652


title: MM_M1_1_sample 2682


title: MM_M1_1_sample 2678


title: MM_M1_1_sample 2677


title: MM_M1_1_sample 2680


title: Chip91484_r20_c33_Treated

description: Chip91484_r20_c33_Treated_CCAATAGCATT-AAGAGGCA


title: SM-GE8XM_S259_E1-50


title: HS_M1_1_sample 651


title: SM-GE8XM_S260_E1-50


title: HS_M1_1_sample 655


title: HS_M1_1_sample 658


title: MM_M1_1_sample 2681


title: HS_M1_1_sample 654


title: Chip91484_r20_c27_Treated

description: Chip91484_r20_c27_Treated_CCAATAGGAAG-AAGAGGCA


title: Chip91484_r20_c40_Untreated

description: Chip91484_r20_c40_Untreated_CAACCAAGTAC-AAGAGGCA


title: SM-GE8XM_S265_E1-50


title: MM_M1_1_sample 2679


title: HS_M1_1_sample 653


title: HS_M1_1_sample 650


title: Chip91484_r20_c38_Untreated

description: Chip91484_r20_c38_Untreated_CAACCGAAGAC-AAGAGGCA


title: SM-GE8XM_S192_E1-50


title: MM_M1_1_sample 2676


title: SM-GE8XM_S191_E1-50


title: SM-GE8XK_S383_E1-50

value: 102 days


title: HS_M1_1_sample 647


title: HS_M1_1_sample 649


title: SM-GE8XK_S382_E1-50


title: MM_M1_1_sample 2673


title: MM_M1_1_sample 2674


title: Chip91484_r20_c1_Treated

description: Chip91484_r20_c1_Treated_CCAACCTCCTT-AAGAGGCA


title: MM_M1_1_sample 2675


title: HS_M1_1_sample 648


title: HS_M1_1_sample 645


title: Chip91484_r2_c64_Untreated

description: Chip91484_r2_c64_Untreated_AACCAGAATGG-AAGAGGCA


title: MM_M1_1_sample 2672


title: MM_M1_1_sample 2670


title: Chip91484_r2_c63_Untreated

description: Chip91484_r2_c63_Untreated_AACCAGAAGAC-AAGAGGCA


title: MM_M1_1_sample 2671


title: Chip91484_r2_c61_Untreated

description: Chip91484_r2_c61_Untreated_AACCAGCTCAT-AAGAGGCA


title: SM-GE8XM_S190_E1-50

value: right


title: SM-GE8XK_S379_E1-50


title: HS_M1_1_sample 643


title: SM-GE8XK_S384_E1-50


title: SM-GE8XK_S381_E1-50


title: Chip91484_r2_c56_Treated

description: Chip91484_r2_c56_Treated_AACGACTGGAT-AAGAGGCA


title: MM_M1_1_sample 2669


title: MM_M1_1_sample 2668


title: HS_M1_1_sample 644


title: SM-GE8XK_S377_E1-50


title: SM-GE8XK_S380_E1-50


title: Chip91484_r2_c45_Untreated

description: Chip91484_r2_c45_Untreated_AACCGGCAAGC-AAGAGGCA


title: MM_M1_1_sample 2667


title: Chip91484_r2_c5_Treated

description: Chip91484_r2_c5_Treated_AACGAGCCTAC-AAGAGGCA


title: SM-GE8XK_S375_E1-50


title: SM-GE8XK_S374_E1-50


title: Chip91484_r2_c41_Untreated

description: Chip91484_r2_c41_Untreated_AACCGGTTGAT-AAGAGGCA


title: HS_M1_1_sample 641


title: HS_M1_1_sample 642


title: SM-GE8XK_S373_E1-50

description:
exon_counts.csv.gz
intron_counts.csv.gz
cpm.csv.gz


title: MM_M1_1_sample 2666


title: HS_M1_1_sample 640


title: Chip91484_r20_c14_Untreated

description: Chip91484_r20_c14_Untreated_ATGGCATCTTA-AAGAGGCA


title: Chip91484_r2_c31_Treated

description: Chip91484_r2_c31_Treated_AACGCTACCTA-AAGAGGCA


title: Chip91484_r2_c28_Treated

description: Chip91484_r2_c28_Treated_AACGCGACTTG-AAGAGGCA


title: MM_M1_1_sample 2665


title: Chip91484_r2_c18_Untreated

description: Chip91484_r2_c18_Untreated_AACCATCAAGG-AAGAGGCA


title: MM_M1_1_sample 2664


title: SM-GE8XK_S371_E1-50


title: HS_M1_1_sample 639


title: MM_M1_1_sample 2663


title: HS_M1_1_sample 638


title: SM-GE8XK_S368_E1-50


title: HS_M1_1_sample 637


title: Chip91484_r2_c14_Untreated

description: Chip91484_r2_c14_Untreated_AACCATGGCAG-AAGAGGCA


title: HS_M1_1_sample 636


title: Chip91484_r19_c55_Treated

description: Chip91484_r19_c55_Treated_CCAATAATAGT-AAGAGGCA


title: SM-GE8XK_S367_E1-50


title: Chip91484_r19_c47_Untreated

description: Chip91484_r19_c47_Untreated_ATAACCAGTAG-AAGAGGCA


title: MM_M1_1_sample 2660


title: SM-GE8XK_S365_E1-50


title: HS_M1_1_sample 635


title: MM_M1_1_sample 2659


title: HS_M1_1_sample 634


title: MM_M1_1_sample 2657


title: SM-GE8XK_S363_E1-50


title: SM-GE8XK_S366_E1-50


title: Chip91484_r19_c37_Untreated

description: Chip91484_r19_c37_Untreated_ATATTGCTCGA-AAGAGGCA


title: Chip91484_r19_c36_Untreated

description: Chip91484_r19_c36_Untreated_ATAACCGAAGG-AAGAGGCA


title: MM_M1_1_sample 2662


title: MM_M1_1_sample 2658


title: SM-GE8XK_S364_E1-50


title: HS_M1_1_sample 631


title: Chip91484_r19_c49_Treated

description: Chip91484_r19_c49_Treated_CCAATAAGGCG-AAGAGGCA


title: HS_M1_1_sample 633


title: Chip91484_r19_c34_Treated

description: Chip91484_r19_c34_Treated_CAGCTGATAGT-AAGAGGCA


title: HS_M1_1_sample 632


title: MM_M1_1_sample 2656


title: MM_M1_1_sample 2661


title: SM-GE8XK_S362_E1-50


title: SM-GE8XK_S361_E1-50


title: HS_M1_1_sample 630


title: HS_M1_1_sample 646


title: SM-GE8XK_S288_E1-50


title: HS_M1_1_sample 629


title: HS_M1_1_sample 628


title: MM_M1_1_sample 2654