title: microRNA-seq from adrenal gland (ENCLB780YOX)

description:
https://www.encodeproject.org/experiments/ENCSR359KCJ/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND4 male adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR359KCJ
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB780YOX
size range: <30

value: adrenal gland_B6Cast F1 PND4_Male 03_ENC4_cDNA438

value: Barbara Wold, Caltech

value: ENCBS886OBH at ENCODE; https://www.encodeproject.org/ENCBS886OBH/


title: Sham 1

status: Public on Nov 04 2021

type: SRA

city: Los Angeles

first: Jie

last: Lei

state: CA

address: 2250 Alcazar Street, CSA 103

department: Ostrow School of Dentistry

country: USA

institute: University of Southern California

library_source: transcriptomic

data_processing:
The quality of RNA samples was assessed using an Agilent 2100 Bioanalyzer
The samples used for sequencing had RNA integrity (RIN) numbers >6.0
Single-end reads with 75 cycles were carried out on NextSeq500 for 3 pairs of samples
Raw reads were trimmed, aligned to the mm10 genome using STAR (version 2.6.1d; https://github.com/alexdobin/STAR/releases), and normalized using CPM
Differential expression was estimated using the gene set analysis (GSA) method.Values of P≤0.05 and fold change < −1.2 or >1.2 across groups were considered significant
Genome_build: mm10 genome
Supplementary_files_format_and_content: tab-delimited text files include lognormal with shrinkage mean value for each feature in individual sample.

molecule: total RNA

organism: Mus musculus

source_name: mandibular condyle

growth_protocol: Mice were housed in pathogen-free conditions.

extract_protocol:
The subchondral bone of the mandibular condyle on the operated joints was dissected for RNA isolation with an RNeasy Micro Kit (QIAGEN; #74004)
The cDNA library preparation and sequencing were conducted in the Technology Center for Genomics & Bioinformatics at the University of California, Los Angeles

treatment_protocol: The mice were anesthetized with isoflurane and sham surgery or partial discectomy was performed on the TMJ unilaterally

tag: strain

value: wild type

tag: tissue

value: subchondral bone of mandibular condyle

tag: age

tag: treatment

value: Sham operation


title: PD 1

value: Partial discectomy


title: Sham 2


title: microRNA-seq from adrenal gland (ENCLB373HGZ)

city: Stanford

first: ENCODE

last: DCC

address: 300 Pasteur Dr

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR680BZN/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND10 male adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR680BZN
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB373HGZ
size range: <30

data_processing: See GSM*_README.txt supplementary file linked below

source_name: Mus musculus strain B6CASTF1/J male (10 days) adrenal gland tissue

value: adrenal gland

value: tissue

tag: description

value: B6Cast F1 PND10 Male 04 adrenal gland for Wold core

tag: biosample encode accession

tag: Sex

value: male

tag: dev stage

value: unknown

value: 10 day

tag: lab

tag: source

value: The Jackson Laboratory

tag: link

value: ENCBS368WXW at ENCODE; https://www.encodeproject.org/ENCBS368WXW/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: microRNA-seq from adrenal gland (ENCLB841KAQ)

description:
https://www.encodeproject.org/experiments/ENCSR138BVH/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND14 male adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR138BVH
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB841KAQ
size range: <30

source_name: Mus musculus strain B6CASTF1/J male (14 days) adrenal gland tissue

value: B6Cast F1 PND14 3x Males 04 adrenal gland for Wold core

value: 14 day

value: ENCBS361GTM at ENCODE; https://www.encodeproject.org/ENCBS361GTM/


title: microRNA-seq from adrenal gland (ENCLB536JLT)

description:
https://www.encodeproject.org/experiments/ENCSR335XKT/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND36 male adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR335XKT
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB536JLT
size range: <30

source_name: Mus musculus strain B6CASTF1/J male (36 days) adrenal gland tissue

value: B6Cast F1 PND36 Male 03 adrenal gland for Wold core

value: 36 day

value: Barbara Wold, Caltech

value: ENCBS758KRR at ENCODE; https://www.encodeproject.org/ENCBS758KRR/


title: microRNA-seq from adrenal gland (ENCLB742VLV)

description:
https://www.encodeproject.org/experiments/ENCSR680BZN/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND10 male adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR680BZN
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB742VLV
size range: <30

value: B6Cast F1 PND10 Male 03 adrenal gland for Wold core

value: ENCBS588OTO at ENCODE; https://www.encodeproject.org/ENCBS588OTO/


title: microRNA-seq from adrenal gland (ENCLB334OTS)

description:
https://www.encodeproject.org/experiments/ENCSR049ABM/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND25 male adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR049ABM
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB334OTS
size range: <30

source_name: Mus musculus strain B6CASTF1/J male (25 days) adrenal gland tissue

value: adrenal gland

value: tissue

value: B6Cast F1 PND25 Male 04 adrenal gland for Wold core

value: 25 day

value: ENCBS536PZT at ENCODE; https://www.encodeproject.org/ENCBS536PZT/


title: microRNA-seq from adrenal gland (ENCLB007BAM)

description:
https://www.encodeproject.org/experiments/ENCSR049ABM/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND25 male adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR049ABM
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB007BAM
size range: <30

value: B6Cast F1 PND25 Male 03 adrenal gland for Wold core

value: male

value: unknown

value: The Jackson Laboratory

value: ENCBS798KOH at ENCODE; https://www.encodeproject.org/ENCBS798KOH/


title: microRNA-seq from adrenal gland (ENCLB808STG)

description:
https://www.encodeproject.org/experiments/ENCSR018FOQ/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND14 female adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR018FOQ
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-07-27
lab: Ali Mortazavi, UCI
library encode accession: ENCLB808STG
size range: <30

source_name: Mus musculus strain B6CASTF1/J female (14 days) adrenal gland tissue

value: B6Cast F1 PND14 3x Females 03 adrenal gland for Wold core

value: female

value: 14 day

value: ENCBS403EIL at ENCODE; https://www.encodeproject.org/ENCBS403EIL/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: MCA948-W-1G

city: Marseille

first: Bertrand

last: Escaliere

address: 163 avenue de Luminy

country: France

institute: CIML

data_processing:
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to GRCm38 genome using STAR 2.5.3a
Barcodes metric were calculated using Picard ExtractIlluminaBarcodes
Count table was generated using featureCounts v1.5.2
Genome_build: GRCm38

source_name: MCA948-W-1G Fibrosarcoma

growth_protocol: in vivo growth in C57BL/6 mice

extract_protocol:
Quiagen mRNA extraction kit
According to Illumina instructions

tag: mouse genetic bckground

tag: mouse strain

value: Ncr1Cre R26DTA

tag: nk cell sensitive

value: Yes


title: MCA948-W-2G

source_name: MCA948-W-2G Fibrosarcoma


title: MCA948-W-2D

source_name: MCA948-W-2D Fibrosarcoma


title: MCA948-a-1G

source_name: MCA948-a-1G Fibrosarcoma


title: MCA948-a-2D

source_name: MCA948-a-2D Fibrosarcoma


title: microRNA-seq from adrenal gland (ENCLB386WDL)

description:
https://www.encodeproject.org/experiments/ENCSR375OPO/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND25 female adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR375OPO
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB386WDL
size range: <30

source_name: Mus musculus strain B6CASTF1/J female (25 days) adrenal gland tissue

value: adrenal gland

value: B6Cast F1 PND25 Female 03 adrenal gland for Wold core

value: Barbara Wold, Caltech

value: ENCBS430IOM at ENCODE; https://www.encodeproject.org/ENCBS430IOM/


title: T20013_0hour_0day

type: RNA

city: Singapore

first: Zbynek

last: Bozdech

state: Select if applicable

department: Molecular Genetics&Cell Biology

country: Singapore

institute: Nanyang Technological University

hyb_protocol: Equal amounts of labelled sample and reference cDNA were hybridized on the microarray chip using the Agilent hybridization system. Hybridizations were performed for 20 hours at 70°C in a rotating hybridization oven at 10rpm as described in Bozdech, Z., S. Mok & A. P. Gupta, (2013) DNA microarray-based genome-wide analyses of Plasmodium parasites. Methods in molecular biology 923:

scan_protocol: Microarray scanning was done using PowerScanner (Tecan) at 10uM resolution and with autogain PMT adjustments for both channels. Data was acquired using GenePix Pro v6.0 software (Axon Instruments) as described in Mok, S., M. Imwong et al (2011) Artemisinin resistance in Plasmodium falciparum is associated with an altered temporal pattern of transcription. BMC Genomics 12: 391.

data_processing:
Features with flag>0 and with median foreground intensity greater than 1.5 fold median background intensity for either channel passed quality control and were accepted.
Local  background correction using normexp, followed by lowess normalization across all features within array and quantile normalization between arrays were carried out to generate the normalized Log2 gene expression ratios.

organism: Plasmodium falciparum

source_name: P. falciparum field isolate from patient

label_protocol: Reverse transcription and cDNA synthesis were done following modifed Smart-Seq2 protocol (Picelli, S., Faridani, O., Björklund, Å. et al. Full-length RNA-seq from single cells using Smart-seq2. Nat Protoc 9, 171–181 (2014)). Synthesis of aminoallyl-coupled cDNA and labeling of samples with Cy fluorophore (GE Healthcare) were carried out as described in Bozdech, Z., S. Mok & A. P. Gupta, (2013) DNA microarray-based genome-wide analyses of Plasmodium parasites. Methods in molecular biology 923: 189-211.

extract_protocol: Total RNA was extracted using TRIzol (Invitrogen) with chloroform supplemantaiton (Merck) and Direct-Zol-96 kit (Zymo) following manufacturers' instructions.

tag: sample type/stage

value: In vivo, Blood stage

value: Prior to ACT treatment, 0h

tag: batch

source_name: P. falciparum 3D7 RNA reference pool

tag: culture, stage, strain, composition

value: In vitro culture, asexual blood stage, laboratory strain 3D7, mixture of equal amounts of RNA harvested every 6 hours over the 48-hour parasite's intraerythrocytic life cycle


title: MCA943-a-R

source_name: MCA943-a-R Fibrosarcoma

value: No


title: MCA943-a-1D

source_name: MCA943-a-1D Fibrosarcoma


title: MCA943-a-1G

source_name: MCA943-a-1G Fibrosarcoma


title: microRNA-seq from adrenal gland (ENCLB149EZW)

description:
https://www.encodeproject.org/experiments/ENCSR335XKT/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND36 male adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR335XKT
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB149EZW
size range: <30

value: tissue

value: B6Cast F1 PND36 Male 04 adrenal gland for Wold core

value: male

value: unknown

value: 36 day

value: The Jackson Laboratory

value: ENCBS414TUZ at ENCODE; https://www.encodeproject.org/ENCBS414TUZ/


title: microRNA-seq from adrenal gland (ENCLB065LZT)

description:
https://www.encodeproject.org/experiments/ENCSR138BVH/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND14 male adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR138BVH
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB065LZT
size range: <30

value: B6Cast F1 PND14 3x Males 03 adrenal gland for Wold core

value: 14 day

value: ENCBS479RMT at ENCODE; https://www.encodeproject.org/ENCBS479RMT/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: Sham 3

source_name: mandibular condyle

tag: strain

value: wild type

value: subchondral bone of mandibular condyle

value: Sham operation


title: MCA969-W-2D

source_name: MCA969-W-2D Fibrosarcoma

value: Ncr1Cre R26DTA

value: Yes


title: MCA943-W-2G

source_name: MCA943-W-2G Fibrosarcoma

value: No


title: MCA969-W-1D

source_name: MCA969-W-1D Fibrosarcoma


title: MCA948-a-2G

source_name: MCA948-a-2G Fibrosarcoma


title: MCA948-a-R

source_name: MCA948-a-R Fibrosarcoma


title: MCA970-a-2D

source_name: MCA970-a-2D Fibrosarcoma


title: MCA970-W-R

source_name: MCA970-W-R Fibrosarcoma


title: MCA970-W-1D

source_name: MCA970-W-1D Fibrosarcoma


title: MCA970-a-1D

source_name: MCA970-a-1D Fibrosarcoma


title: MCA972-a-1G

source_name: MCA972-a-1G Fibrosarcoma


title: MCA972-2G

source_name: MCA972-2G Fibrosarcoma


title: MCA972-a-R

source_name: MCA972-a-R Fibrosarcoma


title: MCA970-a-2G

source_name: MCA970-a-2G Fibrosarcoma


title: MCA972-a-1

source_name: MCA972-a-1 Fibrosarcoma


title: MCA969-a-R

source_name: MCA969-a-R Fibrosarcoma


title: MCA969-a-2D

source_name: MCA969-a-2D Fibrosarcoma


title: MCA969-a-1D

source_name: MCA969-a-1D Fibrosarcoma


title: MCA969-W-2G

source_name: MCA969-W-2G Fibrosarcoma


title: MCA969-a-1G

source_name: MCA969-a-1G Fibrosarcoma


title: 5.3 female Rif1 WT_mESC_pre deletion [C1_WT]

city: Edinburgh

first: Sara

last: Buonomo

address: Alexander Crum Brown Road

department: Institute of Cell Biology

country: United Kingdom

institute: University of Edinburgh

description: HKLF2BGX7_C1_18s002728-1-1_Elin_lane118s002728

data_processing:
fastq files were aligned to mouse genome assembly (mm9) using bwa mem command
Gene level read counts were computed using the htseq-count with parameters: -f bam -s no -r pos
Expression data was normalized using the normTransform function in the DESeq2  package in R
Differentially expressed genes (adjusted p-value < 0.05) were identified by using the lfcShrink function in DESeq2 package
Genome_build: mm9
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and  sample

source_name: mESC-pre deletion

growth_protocol: mESC were cultured at 37°C, 7.5% CO2 in mES medium supplemented with, 12.5% heat-inactivated fetal bovine serum, 20 ng/ml leukemia inhibitory factor, 1 μM MEK inhibitor PD0325901 and 3 μM GSK3 inhibitor CHIR99021.

extract_protocol:
Frozen cell pellets were lysed and homogenised using QIAshredder column (Qiagen) followed by RNA extraction using the RNeasy kit (Qiagen), according to the manufacturer’s instructions. On column-DNAse treatment as well as post-exptaction DNAse treatment was performed.
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: See SAMPLE section above

tag: strain background

value: C57BL/6J-129/SvJ x Mus musculus castaneus

tag: genotype

value: Rif1+/+ Rs26+/CreERT

tag: tissue/cell type

value: mESC-pre deletion


title: MCA969-WR

source_name: MCA969-WR Fibrosarcoma


title: 15.10 female Rif1 KO 2d EB [B3_KO]

description: HW3YHBGX3_B3_17s005181-1-1_Elin_lane117s005181

source_name: embryoid bodies

value: Rif1F/F Rs26+/CreERT

tag: treatment

value: embryoid bodies


title: 5.16 female Rif1 WT_mESC_pre deletion [C2_WT]

description: HKLF2BGX7_C2_18s002729-1-1_Elin_lane118s002729


title: 15.10 female Rif1 KO mESC_pre deletion [C3_WT]

description: HKLF2BGX7_C3_18s002730-1-1_Elin_lane118s002730


title: MCA970-W-2D

source_name: MCA970-W-2D Fibrosarcoma


title: 5.3 female Rif1 WT_2d EB [B1_WT]

description: HW3YHBGX3_B1_17s005179-1-1_Elin_lane117s005179


title: 16.9 female Rif1 KO mESC_pre deletion [C4_WT]

description: HKLF2BGX7_C4_18s002731-1-1_Elin_lane118s002731


title: 5.16 female Rif1 WT_2d EB [B2_WT]

description: HW3YHBGX3_B2_17s005180-1-1_Elin_lane117s005180


title: 16.9 female Rif1 KO 2d EB [B4_KO]

description: HW3YHBGX3_B4_17s005182-1-1_Elin_lane117s005182


title: 15.10 female Rif1 KO mESC [A3_KO]

description: HW5NMBGX3_A3_17s005172-1-1_Elin_lane117s005172

source_name: mESC

value: 4-hydroxytamoxifen (OHT)

value: mESC


title: 5.16 female Rif1 WT_mESC [A2_WT]

description: HW5NMBGX3_A2_17s005171-1-1_Elin_lane117s005171


title: iNOS_Ly6c_M5

city: Rehoboth

first: Dotan

last: Hoffman

address: Herzel St 234, Biological regulation

department: Biological regulation

country: Israel

institute: Weizmann institute of science

data_processing:
The cel-seq pipeline (https://github.com/yanailab/CEL-Seq-pipeline) was used for sample demultiplexing, alignment to the genome (mm9), and gene counting.
Gene normaliztion was calculated by R/Bioconductor package DESeq
Genome_build: mm9
Supplementary_files_format_and_content: tab-delimited text files include normalized number of reads.

source_name: iNOS Mf

extract_protocol:
24 hours post infection spleens were removed squashed against 70 um strainer followed by red blood lysis and stained with antibodies. 1000 cells of CD9 Mf (Cd3e-Cd19-Ly6g-NK1.1-CD11B+F4/80+Ly6C-CD9+) and iNOS Mf (Cd3e-Cd19-Ly6g-NK1.1-CD11B+F4/80+Ly6C+CD9-) were sorted to lysis buffer (0.1% Triton-100, 0.5U/Ml RNasin+ (promega).
RNA-seq libraries were prepared according to Cel-seq2 libraries protocol (Hashimshony, T. et al Genome Biology 2016)

treatment_protocol: 8 weeks old female mice were intravenously inculated with 1X10^7 S.Tm

value: female

tag: tissue

value: Spleen

tag: cell type

value: Splenocytes

tag: cell subtype

tag: replicate


title: iNOS_Ly6c_M6

tag: Sex

value: intravenously inculated with 1X10^7 S.Tm


title: 5.3 female Rif1 WT_mESC [A1_WT]

description: HW5NMBGX3_A1_17s005170-1-1_Elin_lane117s005170


title: iNOS_Ly6c_M4


title: iNOS_Ly6c_M2


title: iNOS_Ly6c_M1


title: iNOS_Ly6c_M3


title: C9_M6

source_name: CD9 Mf


title: C9_M5


title: C9_M2


title: C9_M1


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta T cell (ENCLB136FTK)

description:
https://www.encodeproject.org/experiments/ENCSR693AAL/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq of activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads.
experiment encode accession: ENCSR693AAL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR674JPB
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB136FTK
fragmentation methods: none

library_source: genomic

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens male adult (20 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads

tag: antibody

value: primary cell

tag: biosample encode accession

value: male

tag: dev stage

value: adult

tag: age

value: 20 year

tag: lab

value: Yijun Ruan, JAX

tag: source

value: AllCells

tag: treatments

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

tag: link

value: ENCBS896OLN at ENCODE; https://www.encodeproject.org/ENCBS896OLN/

value: Derived from ENCODE donor ENCDO394DKX; https://www.encodeproject.org/ENCDO394DKX/


title: Mint-ChIP-seq from activated CD4-positive, alpha-beta T cell (ENCLB968RYM)

description:
https://www.encodeproject.org/experiments/ENCSR693AAL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq of activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads.
experiment encode accession: ENCSR693AAL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR674JPB
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB968RYM
fragmentation methods: none


title: Histone ChIP-seq from heart right ventricle (ENCLB567OOS)

description:
https://www.encodeproject.org/experiments/ENCSR957LSB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on heart right ventricle tissue female adult (59 years).
experiment encode accession: ENCSR957LSB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR049JKQ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB567OOS
size range: 200-600

source_name: Homo sapiens female adult (59 years) heart right ventricle tissue

value: heart right ventricle

value: tissue

value: 59 year

value: Bradley Bernstein, Broad

value: Shin Lin

tag: health state

value: DM:yes; HTN:yes; CAD:no

value: ENCBS637BEQ at ENCODE; https://www.encodeproject.org/ENCBS637BEQ/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Histone ChIP-seq from heart right ventricle (ENCLB013AJY)

description:
https://www.encodeproject.org/experiments/ENCSR957LSB/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on heart right ventricle tissue female adult (59 years).
experiment encode accession: ENCSR957LSB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR049JKQ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB013AJY
size range: 200-600

value: female


title: Histone ChIP-seq from spleen (ENCLB215KOF)

description:
https://www.encodeproject.org/experiments/ENCSR692WNL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on spleen tissue female adult (61 years)
experiment encode accession: ENCSR692WNL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR119AVG
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB215KOF
size range: 200-600

source_name: Homo sapiens female adult (61 years) spleen tissue

value: spleen

value: 61 year

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: ENCBS193VFU at ENCODE; https://www.encodeproject.org/ENCBS193VFU/

value: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/


title: Histone ChIP-seq from spleen (ENCLB042LZS)

description:
https://www.encodeproject.org/experiments/ENCSR692WNL/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on spleen tissue female adult (61 years)
experiment encode accession: ENCSR692WNL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR119AVG
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB042LZS
size range: 200-600

value: adult


title: Mint-ChIP-seq from activated T-cell (ENCLB038SIQ)

description:
https://www.encodeproject.org/experiments/ENCSR957LLW/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on activated T-cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours..
experiment encode accession: ENCSR957LLW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR975DSD
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB038SIQ

source_name: Homo sapiens male adult (42 years) activated T-cell primary cell

value: activated T-cell

value: primary cell

value: male

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS351GLT at ENCODE; https://www.encodeproject.org/ENCBS351GLT/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: 16.9 female Rif1 KO mESC [A4_KO]

description: HW5NMBGX3_A4_17s005173-1-1_Elin_lane117s005173

tag: strain background

value: C57BL/6J-129/SvJ x Mus musculus castaneus

tag: genotype

value: Rif1F/F Rs26+/CreERT

value: 4-hydroxytamoxifen (OHT)

value: mESC


title: TF ChIP-seq from middle frontal area 46 (ENCLB187TIB)

description:
https://www.encodeproject.org/experiments/ENCSR689LFJ/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on middle frontal area 46 tissue female adult (83 years)
experiment encode accession: ENCSR689LFJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR845BPQ
encode release date: 2021-07-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB187TIB
size range: 200-600

source_name: Homo sapiens female adult (83 years) middle frontal area 46 tissue

value: CTCF

value: middle frontal area 46

value: tissue

value: female

value: 83 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS589LVU at ENCODE; https://www.encodeproject.org/ENCBS589LVU/

value: Derived from ENCODE donor ENCDO448ZXP; https://www.encodeproject.org/ENCDO448ZXP/


title: C9_M4

tag: strain

tag: treatment

value: intravenously inculated with 1X10^7 S.Tm

value: Spleen

value: Splenocytes


title: Mint-ChIP-seq from mesothelial cell of epicardium (ENCLB270DED)

description:
https://www.encodeproject.org/experiments/ENCSR947ZBW/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on mesothelial cell of epicardium
experiment encode accession: ENCSR947ZBW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR268SLH
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB270DED

source_name: Homo sapiens female embryo (5 days) mesothelial of epicardium in vitro differentiated cells

value: mesothelial cell of epicardium

value: in vitro differentiated cells

tag: description

value: WA09 derived epicardium (mesothelium)

value: embryonic

value: 5 day

value: SESCC

value: healthy

value: ENCBS048EDA at ENCODE; https://www.encodeproject.org/ENCBS048EDA/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Histone ChIP-seq from heart left ventricle (ENCLB842IQO)

description:
https://www.encodeproject.org/experiments/ENCSR419BNY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on heart left ventricle tissue male adult (66 years).
experiment encode accession: ENCSR419BNY
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR061EXX
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB842IQO
size range: 200-600

source_name: Homo sapiens male adult (66 years) heart left ventricle tissue

value: heart left ventricle

value: tissue

value: male

value: ischemic (EF 29% LVEDD 5.4; RV normal size, mild dysfunction)

value: adult

value: 66 year

value: Shin Lin

value: ENCBS966SZA at ENCODE; https://www.encodeproject.org/ENCBS966SZA/

value: Derived from ENCODE donor ENCDO926KEV; https://www.encodeproject.org/ENCDO926KEV/


title: Mint-ChIP-seq from neural crest cell (ENCLB870VAK)

description:
https://www.encodeproject.org/experiments/ENCSR685HSP/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on neural crest cell.
experiment encode accession: ENCSR685HSP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR713YQD
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB870VAK

source_name: Homo sapiens female embryo (5 days) neural crest in vitro differentiated cells originated from neural crest cell

value: neural crest cell

value: in vitro differentiated cells

value: WA09 derived neural crest cells

value: female

value: Bradley Bernstein, Broad

value: ENCBS417JEU at ENCODE; https://www.encodeproject.org/ENCBS417JEU/


title: Mint-ChIP-seq from WTC11 (ENCLB148SNF)

description:
https://www.encodeproject.org/experiments/ENCSR418YEV/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on WTC11
experiment encode accession: ENCSR418YEV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR686JHP
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB148SNF

source_name: Homo sapiens WTC11 cell line

tag: line

value: cell line

value: 30 year

value: Yin Shen

tag: passage number

value: ENCBS532TBS at ENCODE; https://www.encodeproject.org/ENCBS532TBS/

value: Derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: Histone ChIP-seq from heart left ventricle (ENCLB035YJH)

description:
https://www.encodeproject.org/experiments/ENCSR419BNY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on heart left ventricle tissue male adult (66 years).
experiment encode accession: ENCSR419BNY
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR061EXX
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB035YJH
size range: 200-600

value: heart left ventricle

value: tissue

tag: Sex

value: male

value: ischemic (EF 29% LVEDD 5.4; RV normal size, mild dysfunction)


title: Mint-ChIP-seq from mesothelial cell of epicardium (ENCLB659PZD)

description:
https://www.encodeproject.org/experiments/ENCSR947ZBW/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on mesothelial cell of epicardium
experiment encode accession: ENCSR947ZBW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR268SLH
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB659PZD

tag: antibody

value: mesothelial cell of epicardium

value: WA09 derived epicardium (mesothelium)

value: embryonic

value: 5 day

value: SESCC

value: healthy

value: ENCBS048EDA at ENCODE; https://www.encodeproject.org/ENCBS048EDA/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from neural crest cell (ENCLB706YCZ)

description:
https://www.encodeproject.org/experiments/ENCSR685HSP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on neural crest cell.
experiment encode accession: ENCSR685HSP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR713YQD
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB706YCZ

value: neural crest cell

value: in vitro differentiated cells

value: WA09 derived neural crest cells

tag: biosample encode accession

value: female

value: Bradley Bernstein, Broad

value: ENCBS417JEU at ENCODE; https://www.encodeproject.org/ENCBS417JEU/


title: Mint-ChIP-seq from WTC11 (ENCLB327SUH)

description:
https://www.encodeproject.org/experiments/ENCSR418YEV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on WTC11
experiment encode accession: ENCSR418YEV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR686JHP
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB327SUH

value: cell line

tag: dev stage

value: adult

value: 30 year

value: Yin Shen

value: ENCBS869UGY at ENCODE; https://www.encodeproject.org/ENCBS869UGY/

value: Derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: Mint-ChIP-seq from WTC11 (ENCLB900XXN)

description:
https://www.encodeproject.org/experiments/ENCSR418YEV/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on WTC11
experiment encode accession: ENCSR418YEV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR686JHP
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB900XXN

value: male

tag: age

value: ENCBS532TBS at ENCODE; https://www.encodeproject.org/ENCBS532TBS/


title: Mint-ChIP-seq from WTC11 (ENCLB122TTA)

description:
https://www.encodeproject.org/experiments/ENCSR418YEV/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on WTC11
experiment encode accession: ENCSR418YEV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR686JHP
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB122TTA

tag: lab


title: Mint-ChIP-seq from activated T-cell (ENCLB084HIC)

description:
https://www.encodeproject.org/experiments/ENCSR957LLW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on activated T-cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours..
experiment encode accession: ENCSR957LLW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR975DSD
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB084HIC

value: activated T-cell

value: primary cell

value: 42 year

value: John Stamatoyannopoulos, UW

tag: source

value: AllCells

value: ENCBS351GLT at ENCODE; https://www.encodeproject.org/ENCBS351GLT/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: C9_M3

value: female

value: intravenously inculated with 1X10^7 S.Tm

tag: tissue

value: Spleen

tag: cell type

value: Splenocytes

tag: cell subtype

tag: replicate


title: TF ChIP-seq from middle frontal area 46 (ENCLB523YDM)

description:
https://www.encodeproject.org/experiments/ENCSR932XBJ/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on middle frontal area 46 tissue male adult (87 years) with Alzheimer's disease, Cognitive impairment
experiment encode accession: ENCSR932XBJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR534KYQ
encode release date: 2021-07-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB523YDM
size range: 200-600

source_name: Homo sapiens male adult (87 years) with Alzheimer's disease, Cognitive impairment; middle frontal area 46 tissue

value: CTCF

value: middle frontal area 46

value: tissue

value: adult

value: 87 year

value: Bradley Bernstein, Broad

value: Rush University

tag: link

value: ENCBS584OEO at ENCODE; https://www.encodeproject.org/ENCBS584OEO/

value: Derived from ENCODE donor ENCDO776JEI; https://www.encodeproject.org/ENCDO776JEI/


title: Mint-ChIP-seq from mesothelial cell of epicardium (ENCLB312WEZ)

description:
https://www.encodeproject.org/experiments/ENCSR947ZBW/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on mesothelial cell of epicardium
experiment encode accession: ENCSR947ZBW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR268SLH
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB312WEZ

source_name: Homo sapiens female embryo (5 days) mesothelial of epicardium in vitro differentiated cells originated from mesothelial cell of epicardium

value: mesothelial cell of epicardium

value: in vitro differentiated cells

value: WA09 derived epicardium (mesothelium)

tag: health state

value: healthy

value: embryonic

value: 5 day

value: SESCC

value: ENCBS924VAR at ENCODE; https://www.encodeproject.org/ENCBS924VAR/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from mesothelial cell of epicardium (ENCLB347LGJ)

description:
https://www.encodeproject.org/experiments/ENCSR947ZBW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on mesothelial cell of epicardium
experiment encode accession: ENCSR947ZBW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR268SLH
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB347LGJ

value: female


title: TF ChIP-seq from middle frontal area 46 (ENCLB198NBV)

description:
https://www.encodeproject.org/experiments/ENCSR932XBJ/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on middle frontal area 46 tissue male adult (87 years) with Alzheimer's disease, Cognitive impairment
experiment encode accession: ENCSR932XBJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR534KYQ
encode release date: 2021-07-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB198NBV
size range: 200-600

value: CTCF

value: middle frontal area 46

value: tissue

value: male


title: TF ChIP-seq from middle frontal area 46 (ENCLB614XRB)

description:
https://www.encodeproject.org/experiments/ENCSR689LFJ/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on middle frontal area 46 tissue female adult (83 years)
experiment encode accession: ENCSR689LFJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR845BPQ
encode release date: 2021-07-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB614XRB
size range: 200-600

value: adult

value: 83 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS589LVU at ENCODE; https://www.encodeproject.org/ENCBS589LVU/

value: Derived from ENCODE donor ENCDO448ZXP; https://www.encodeproject.org/ENCDO448ZXP/


title: Histone ChIP-seq from heart left ventricle (ENCLB718NHE)

description:
https://www.encodeproject.org/experiments/ENCSR932QRC/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on heart left ventricle tissue male adult (43 years).
experiment encode accession: ENCSR932QRC
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR109IWL
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB718NHE
size range: 200-600

source_name: Homo sapiens male adult (43 years) heart left ventricle tissue

value: heart left ventricle

value: 43 year

value: Shin Lin

value: nonischemic (EF 23%, LVEDD 6.1; RV moderate dilation, normal function)

value: ENCBS552CFU at ENCODE; https://www.encodeproject.org/ENCBS552CFU/

value: Derived from ENCODE donor ENCDO967KID; https://www.encodeproject.org/ENCDO967KID/


title: Histone ChIP-seq from heart left ventricle (ENCLB225CVC)

description:
https://www.encodeproject.org/experiments/ENCSR932QRC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on heart left ventricle tissue male adult (43 years).
experiment encode accession: ENCSR932QRC
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR109IWL
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB225CVC
size range: 200-600


title: Histone ChIP-seq from middle frontal area 46 (ENCLB047NYD)

description:
https://www.encodeproject.org/experiments/ENCSR931QOV/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on middle frontal area 46 tissue female adult (85 years) with Alzheimer's disease.
experiment encode accession: ENCSR931QOV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR629GZZ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB047NYD
size range: 200-600

source_name: Homo sapiens female adult (85 years) with Alzheimer's disease; middle frontal area 46 tissue

value: female

value: 85 year

value: ENCBS368SHA at ENCODE; https://www.encodeproject.org/ENCBS368SHA/

value: Derived from ENCODE donor ENCDO080EZF; https://www.encodeproject.org/ENCDO080EZF/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB325VVA)

description:
https://www.encodeproject.org/experiments/ENCSR931QOV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on middle frontal area 46 tissue female adult (85 years) with Alzheimer's disease.
experiment encode accession: ENCSR931QOV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR629GZZ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB325VVA
size range: 200-600

value: middle frontal area 46

value: tissue


title: Histone ChIP-seq from middle frontal area 46 (ENCLB673ZLX)

description:
https://www.encodeproject.org/experiments/ENCSR929TOD/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with Alzheimer's disease.
experiment encode accession: ENCSR929TOD
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR968MKZ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB673ZLX
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) with Alzheimer's disease; middle frontal area 46 tissue

value: adult

value: 90 or above year

value: ENCBS788LTG at ENCODE; https://www.encodeproject.org/ENCBS788LTG/

value: Derived from ENCODE donor ENCDO865EMM; https://www.encodeproject.org/ENCDO865EMM/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB456DLB)

description:
https://www.encodeproject.org/experiments/ENCSR929TOD/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with Alzheimer's disease.
experiment encode accession: ENCSR929TOD
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR968MKZ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB456DLB
size range: 200-600

value: Bradley Bernstein, Broad

value: Rush University


title: Mint-ChIP-seq from endodermal cell (ENCLB349FDV)

description:
https://www.encodeproject.org/experiments/ENCSR929HHW/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on endodermal cell originated from H1
experiment encode accession: ENCSR929HHW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR637MGY
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB349FDV

source_name: Homo sapiens male embryo endodermal in vitro differentiated cells originated from H1, preserved by flash-freezing

value: endodermal cell

value: in vitro differentiated cells

value: male

value: embryonic

value: not collected

value: Job Dekker, UMass

value: René Maehr

value: healthy

value: ENCBS180HZM at ENCODE; https://www.encodeproject.org/ENCBS180HZM/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB794VCK)

description:
https://www.encodeproject.org/experiments/ENCSR928SPE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with mild cognitive impairment
experiment encode accession: ENCSR928SPE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR437DCH
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB794VCK
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue with mild cognitive impairment

value: middle frontal area 46

value: tissue

value: female

value: ENCBS152TRC at ENCODE; https://www.encodeproject.org/ENCBS152TRC/

value: Derived from ENCODE donor ENCDO634UMA; https://www.encodeproject.org/ENCDO634UMA/


title: Mint-ChIP-seq from endodermal cell (ENCLB763IFN)

description:
https://www.encodeproject.org/experiments/ENCSR929HHW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on endodermal cell originated from H1
experiment encode accession: ENCSR929HHW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR637MGY
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB763IFN


title: TF ChIP-seq from heart right ventricle (ENCLB565PAV)

description:
https://www.encodeproject.org/experiments/ENCSR928RNP/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF TF ChIP-seq on heart right ventricle tissue male adult (43 years).
experiment encode accession: ENCSR928RNP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR481QDJ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB565PAV
size range: 200-600

source_name: Homo sapiens male adult (43 years) heart right ventricle tissue

value: CTCF

value: heart right ventricle

value: adult

value: 43 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: nonischemic (EF 23%, LVEDD 6.1; RV moderate dilation, normal function)

value: ENCBS096INK at ENCODE; https://www.encodeproject.org/ENCBS096INK/

value: Derived from ENCODE donor ENCDO967KID; https://www.encodeproject.org/ENCDO967KID/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB070DHR)

description:
https://www.encodeproject.org/experiments/ENCSR928SPE/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with mild cognitive impairment
experiment encode accession: ENCSR928SPE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR437DCH
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB070DHR
size range: 200-600

value: 90 or above year

value: Rush University


title: TF ChIP-seq from heart right ventricle (ENCLB203JOD)

description:
https://www.encodeproject.org/experiments/ENCSR928RNP/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF TF ChIP-seq on heart right ventricle tissue male adult (43 years).
experiment encode accession: ENCSR928RNP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR481QDJ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB203JOD
size range: 200-600

value: male


title: Mint-ChIP-seq from chondrocyte (ENCLB537INN)

description:
https://www.encodeproject.org/experiments/ENCSR925IAP/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on chondrocyte
experiment encode accession: ENCSR925IAP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR466ZEA
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB537INN

source_name: Homo sapiens female embryo (5 days) chondrocyte in vitro differentiated cells originated from chondrocyte

value: chondrocyte

value: in vitro differentiated cells

value: WA09 derived chondrocytes

value: healthy

value: embryonic

value: 5 day

value: SESCC

value: ENCBS497BNU at ENCODE; https://www.encodeproject.org/ENCBS497BNU/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from chondrocyte (ENCLB989RTC)

description:
https://www.encodeproject.org/experiments/ENCSR925IAP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on chondrocyte
experiment encode accession: ENCSR925IAP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR466ZEA
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB989RTC

value: female

value: Bradley Bernstein, Broad


title: TF ChIP-seq from middle frontal area 46 (ENCLB182NRW)

description:
https://www.encodeproject.org/experiments/ENCSR922HGS/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF TF ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with mild cognitive impairment.
experiment encode accession: ENCSR922HGS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR417AQU
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB182NRW
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) with mild cognitive impairment; middle frontal area 46 tissue

value: CTCF

value: middle frontal area 46

value: tissue

value: adult

value: ENCBS173HMY at ENCODE; https://www.encodeproject.org/ENCBS173HMY/

value: Derived from ENCODE donor ENCDO739EFE; https://www.encodeproject.org/ENCDO739EFE/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB750SFD)

description:
https://www.encodeproject.org/experiments/ENCSR919ZDE/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on middle frontal area 46 tissue female adult (81 years) with Cognitive impairment
experiment encode accession: ENCSR919ZDE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR646FGM
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB750SFD
size range: 200-600

source_name: Homo sapiens female adult (81 years) with Cognitive impairment; middle frontal area 46 tissue

value: 81 year

value: Rush University

value: ENCBS460QXN at ENCODE; https://www.encodeproject.org/ENCBS460QXN/

value: Derived from ENCODE donor ENCDO077CCP; https://www.encodeproject.org/ENCDO077CCP/


title: microRNA-seq from adrenal gland (ENCLB536ADE)

description:
https://www.encodeproject.org/experiments/ENCSR018FOQ/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND14 female adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR018FOQ
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-07-27
lab: Ali Mortazavi, UCI
library encode accession: ENCLB536ADE
size range: <30

source_name: Mus musculus strain B6CASTF1/J female (14 days) adrenal gland tissue

value: adrenal gland

value: B6Cast F1 PND14 Female 04 adrenal gland for Wold core

value: unknown

value: 14 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS232UIC at ENCODE; https://www.encodeproject.org/ENCBS232UIC/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB867ZBU)

description:
https://www.encodeproject.org/experiments/ENCSR919ZDE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on middle frontal area 46 tissue female adult (81 years) with Cognitive impairment
experiment encode accession: ENCSR919ZDE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR646FGM
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB867ZBU
size range: 200-600

value: middle frontal area 46

value: female

value: Bradley Bernstein, Broad


title: Control Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB758CAX)

description:
https://www.encodeproject.org/experiments/ENCSR918BGN/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on CD4-positive, CD25-positive, alpha-beta regulatory T cell with multiple sclerosis.
experiment encode accession: ENCSR918BGN
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB758CAX

source_name: Homo sapiens with multiple sclerosis; CD4-positive, CD25-positive, alpha-beta regulatory T primary cell, preserved by cryopreservation

value: primary cell

value: Treg CD3+ CD4+ CD8- CD25+ CD127-

value: not collected

value: David Hafler

value: multiple sclerosis

value: ENCBS595ZYR at ENCODE; https://www.encodeproject.org/ENCBS595ZYR/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB760ALQ)

description:
https://www.encodeproject.org/experiments/ENCSR916DKK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on middle frontal area 46 tissue female adult (83 years)
experiment encode accession: ENCSR916DKK
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR845BPQ
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB760ALQ
size range: 200-600

source_name: Homo sapiens female adult (83 years) middle frontal area 46 tissue

value: tissue

value: adult

value: 83 year

value: Rush University

value: ENCBS589LVU at ENCODE; https://www.encodeproject.org/ENCBS589LVU/

value: Derived from ENCODE donor ENCDO448ZXP; https://www.encodeproject.org/ENCDO448ZXP/


title: Control Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB705DGJ)

description:
https://www.encodeproject.org/experiments/ENCSR918BGN/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on CD4-positive, CD25-positive, alpha-beta regulatory T cell with multiple sclerosis.
experiment encode accession: ENCSR918BGN
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB705DGJ

value: unknown


title: TF ChIP-seq from middle frontal area 46 (ENCLB266XSA)

description:
https://www.encodeproject.org/experiments/ENCSR913SEI/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF TF ChIP-seq on middle frontal area 46 tissue female adult (86 years) with Alzheimer's disease.
experiment encode accession: ENCSR913SEI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR564VBC
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB266XSA
size range: 200-600

source_name: Homo sapiens female adult (86 years) with Alzheimer's disease; middle frontal area 46 tissue

value: CTCF

value: middle frontal area 46

value: 86 year

value: ENCBS797LUE at ENCODE; https://www.encodeproject.org/ENCBS797LUE/

value: Derived from ENCODE donor ENCDO997SGX; https://www.encodeproject.org/ENCDO997SGX/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB787ZTF)

description:
https://www.encodeproject.org/experiments/ENCSR916DKK/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on middle frontal area 46 tissue female adult (83 years)
experiment encode accession: ENCSR916DKK
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR845BPQ
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB787ZTF
size range: 200-600

value: female

value: Bradley Bernstein, Broad


title: TF ChIP-seq from middle frontal area 46 (ENCLB076PZS)

description:
https://www.encodeproject.org/experiments/ENCSR913SEI/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF TF ChIP-seq on middle frontal area 46 tissue female adult (86 years) with Alzheimer's disease.
experiment encode accession: ENCSR913SEI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR564VBC
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB076PZS
size range: 200-600


title: TF ChIP-seq from pancreas (ENCLB830TBV)

description:
https://www.encodeproject.org/experiments/ENCSR852BLA/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on pancreas tissue female child (16 years)
experiment encode accession: ENCSR852BLA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR067CHO
encode release date: 2021-07-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB830TBV
size range: 200-600

source_name: Homo sapiens female child (16 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: DM:no; HTN:no; CAD:no

value: child

value: 16 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS375CIT at ENCODE; https://www.encodeproject.org/ENCBS375CIT/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: TF ChIP-seq from middle frontal area 46 (ENCLB318ETY)

description:
https://www.encodeproject.org/experiments/ENCSR847OSL/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR847OSL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR437DCH
encode release date: 2021-07-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB318ETY
size range: 200-600

value: tissue

value: adult

value: 90 or above year

value: Rush University

value: ENCBS152TRC at ENCODE; https://www.encodeproject.org/ENCBS152TRC/

value: Derived from ENCODE donor ENCDO634UMA; https://www.encodeproject.org/ENCDO634UMA/


title: TF ChIP-seq from middle frontal area 46 (ENCLB536NOC)

description:
https://www.encodeproject.org/experiments/ENCSR847OSL/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR847OSL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR437DCH
encode release date: 2021-07-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB536NOC
size range: 200-600

value: CTCF

value: middle frontal area 46


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB934YTX)

description:
https://www.encodeproject.org/experiments/ENCSR846JBB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR846JBB
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR404BIJ
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB934YTX

source_name: Homo sapiens male adult (42 years) activated CD8-positive, naive alpha-beta T primary cell

value: primary cell

value: male

value: 42 year

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: ENCBS591TQB at ENCODE; https://www.encodeproject.org/ENCBS591TQB/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB881VVF)

description:
https://www.encodeproject.org/experiments/ENCSR846JBB/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR846JBB
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR404BIJ
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB881VVF


title: TF ChIP-seq from pancreas (ENCLB464OZE)

description:
https://www.encodeproject.org/experiments/ENCSR852BLA/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on pancreas tissue female child (16 years)
experiment encode accession: ENCSR852BLA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR067CHO
encode release date: 2021-07-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB464OZE
size range: 200-600

value: pancreas

value: female

value: DM:no; HTN:no; CAD:no

value: child

value: 16 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS375CIT at ENCODE; https://www.encodeproject.org/ENCBS375CIT/


title: TF ChIP-seq from middle frontal area 46 (ENCLB434XVD)

description:
https://www.encodeproject.org/experiments/ENCSR922HGS/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF TF ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with mild cognitive impairment.
experiment encode accession: ENCSR922HGS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR417AQU
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB434XVD
size range: 200-600

value: CTCF

value: tissue

value: adult

value: 90 or above year

value: Rush University

value: ENCBS173HMY at ENCODE; https://www.encodeproject.org/ENCBS173HMY/

value: Derived from ENCODE donor ENCDO739EFE; https://www.encodeproject.org/ENCDO739EFE/


title: Control ChIP-seq from middle frontal area 46 (ENCLB527LQI)

description:
https://www.encodeproject.org/experiments/ENCSR845BPQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on middle frontal area 46 tissue female adult (83 years)
experiment encode accession: ENCSR845BPQ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-06-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB527LQI
size range: 200-600

value: middle frontal area 46

value: 83 year

value: Bradley Bernstein, Broad

value: ENCBS589LVU at ENCODE; https://www.encodeproject.org/ENCBS589LVU/

value: Derived from ENCODE donor ENCDO448ZXP; https://www.encodeproject.org/ENCDO448ZXP/


title: Control ChIP-seq from middle frontal area 46 (ENCLB451FRV)

description:
https://www.encodeproject.org/experiments/ENCSR845BPQ/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on middle frontal area 46 tissue female adult (83 years)
experiment encode accession: ENCSR845BPQ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-06-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB451FRV
size range: 200-600

value: female


title: Histone ChIP-seq from spleen (ENCLB906HEA)

description:
https://www.encodeproject.org/experiments/ENCSR845NXO/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 ChIP-seq on spleen tissue female adult (61 years)
experiment encode accession: ENCSR845NXO
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR119AVG
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB906HEA
size range: 200-600

source_name: Homo sapiens female adult (61 years) spleen tissue

value: spleen

value: 61 year

value: Shin Lin

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: ENCBS193VFU at ENCODE; https://www.encodeproject.org/ENCBS193VFU/

value: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/


title: Histone ChIP-seq from heart right ventricle (ENCLB422TWN)

description:
https://www.encodeproject.org/experiments/ENCSR843VHQ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on heart right ventricle tissue male adult (69 years).
experiment encode accession: ENCSR843VHQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR481SJM
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB422TWN
size range: 200-600

source_name: Homo sapiens male adult (69 years) heart right ventricle tissue

value: heart right ventricle

value: tissue

value: male

value: ischemic (EF 25% LVEDD 5.7; RV mildly dilated, moderate dysfunction)

value: adult

value: 69 year

value: ENCBS926ALQ at ENCODE; https://www.encodeproject.org/ENCBS926ALQ/

value: Derived from ENCODE donor ENCDO477WED; https://www.encodeproject.org/ENCDO477WED/


title: Histone ChIP-seq from heart right ventricle (ENCLB085MNY)

description:
https://www.encodeproject.org/experiments/ENCSR843VHQ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 ChIP-seq on heart right ventricle tissue male adult (69 years).
experiment encode accession: ENCSR843VHQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR481SJM
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB085MNY
size range: 200-600

value: Bradley Bernstein, Broad


title: Histone ChIP-seq from heart left ventricle (ENCLB713VPA)

description:
https://www.encodeproject.org/experiments/ENCSR843ETK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on heart left ventricle tissue male adult (73 years).
experiment encode accession: ENCSR843ETK
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR170MJE
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB713VPA
size range: 200-600

source_name: Homo sapiens male adult (73 years) heart left ventricle tissue

value: heart left ventricle

value: ischemic (EF 35%, LVEDD 5.7; RV mildly dilated, moderate dysfunction)

value: 73 year

value: ENCBS919GVI at ENCODE; https://www.encodeproject.org/ENCBS919GVI/

value: Derived from ENCODE donor ENCDO804CLC; https://www.encodeproject.org/ENCDO804CLC/


title: Histone ChIP-seq from heart left ventricle (ENCLB106SXT)

description:
https://www.encodeproject.org/experiments/ENCSR843ETK/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 ChIP-seq on heart left ventricle tissue male adult (73 years).
experiment encode accession: ENCSR843ETK
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR170MJE
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB106SXT
size range: 200-600

value: Shin Lin


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB420ZBE)

description:
https://www.encodeproject.org/experiments/ENCSR841MNE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell..
experiment encode accession: ENCSR841MNE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR299YBY
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB420ZBE

source_name: Homo sapiens activated CD8-positive, naive alpha-beta T primary cell

value: primary cell

value: not collected

value: unknown

value: John Stamatoyannopoulos

value: ENCBS521XUI at ENCODE; https://www.encodeproject.org/ENCBS521XUI/

value: Derived from ENCODE donor ENCDO930DIF; https://www.encodeproject.org/ENCDO930DIF/


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB353FLX)

description:
https://www.encodeproject.org/experiments/ENCSR841MNE/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell..
experiment encode accession: ENCSR841MNE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR299YBY
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB353FLX


title: Histone ChIP-seq from heart right ventricle (ENCLB603QUS)

description:
https://www.encodeproject.org/experiments/ENCSR907JTW/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 ChIP-seq on heart right ventricle tissue male adult (61 years).
experiment encode accession: ENCSR907JTW
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR891YGO
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB603QUS
size range: 200-600

source_name: Homo sapiens male adult (61 years) heart right ventricle tissue

value: heart right ventricle

value: tissue

value: male

value: adult

value: 61 year

value: nonischemic (EF 11% LVEDD 7.7; RV severe dilation, severe dysfunction)

value: ENCBS175LFH at ENCODE; https://www.encodeproject.org/ENCBS175LFH/

value: Derived from ENCODE donor ENCDO808ASZ; https://www.encodeproject.org/ENCDO808ASZ/


title: TF ChIP-seq from heart left ventricle (ENCLB927NDQ)

description:
https://www.encodeproject.org/experiments/ENCSR904RIA/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on heart left ventricle tissue male adult (61 years)
experiment encode accession: ENCSR904RIA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR696HNV
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB927NDQ
size range: 200-600

source_name: Homo sapiens male adult (61 years) heart left ventricle tissue

value: CTCF

value: heart left ventricle

value: Bradley Bernstein, Broad

value: ENCBS700NCU at ENCODE; https://www.encodeproject.org/ENCBS700NCU/


title: TF ChIP-seq from heart left ventricle (ENCLB079VHJ)

description:
https://www.encodeproject.org/experiments/ENCSR904RIA/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on heart left ventricle tissue male adult (61 years)
experiment encode accession: ENCSR904RIA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR696HNV
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB079VHJ
size range: 200-600

value: Shin Lin


title: TF ChIP-seq from heart right ventricle (ENCLB392AWA)

description:
https://www.encodeproject.org/experiments/ENCSR840EYN/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF TF ChIP-seq on heart right ventricle tissue female adult (59 years).
experiment encode accession: ENCSR840EYN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR049JKQ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB392AWA
size range: 200-600

source_name: Homo sapiens female adult (59 years) heart right ventricle tissue

value: female

value: 59 year

value: DM:yes; HTN:yes; CAD:no

value: ENCBS637BEQ at ENCODE; https://www.encodeproject.org/ENCBS637BEQ/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Histone ChIP-seq from heart right ventricle (ENCLB120TCB)

description:
https://www.encodeproject.org/experiments/ENCSR839GXY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on heart right ventricle tissue male adult (73 years).
experiment encode accession: ENCSR839GXY
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR145RXI
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB120TCB
size range: 200-600

source_name: Homo sapiens male adult (73 years) heart right ventricle tissue

value: heart right ventricle

value: tissue

value: 73 year

value: ischemic (EF 35%, LVEDD 5.7; RV mildly dilated, moderate dysfunction)

value: ENCBS237SHK at ENCODE; https://www.encodeproject.org/ENCBS237SHK/

value: Derived from ENCODE donor ENCDO804CLC; https://www.encodeproject.org/ENCDO804CLC/


title: TF ChIP-seq from heart right ventricle (ENCLB559YNL)

description:
https://www.encodeproject.org/experiments/ENCSR840EYN/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF TF ChIP-seq on heart right ventricle tissue female adult (59 years).
experiment encode accession: ENCSR840EYN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR049JKQ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB559YNL
size range: 200-600

value: adult


title: Histone ChIP-seq from heart right ventricle (ENCLB248EYA)

description:
https://www.encodeproject.org/experiments/ENCSR839GXY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on heart right ventricle tissue male adult (73 years).
experiment encode accession: ENCSR839GXY
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR145RXI
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB248EYA
size range: 200-600

value: male


title: Histone ChIP-seq from heart right ventricle (ENCLB303KNM)

description:
https://www.encodeproject.org/experiments/ENCSR902OEF/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 ChIP-seq on heart right ventricle tissue male adult (66 years).
experiment encode accession: ENCSR902OEF
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR898WPF
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB303KNM
size range: 200-600

source_name: Homo sapiens male adult (66 years) heart right ventricle tissue

value: ischemic (EF 29% LVEDD 5.4; RV normal size, mild dysfunction)

value: 66 year

value: ENCBS948AHG at ENCODE; https://www.encodeproject.org/ENCBS948AHG/

value: Derived from ENCODE donor ENCDO926KEV; https://www.encodeproject.org/ENCDO926KEV/


title: Histone ChIP-seq from spleen (ENCLB278BHT)

description:
https://www.encodeproject.org/experiments/ENCSR845NXO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on spleen tissue female adult (61 years)
experiment encode accession: ENCSR845NXO
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR119AVG
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB278BHT
size range: 200-600

value: spleen

value: female

value: 61 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: ENCBS193VFU at ENCODE; https://www.encodeproject.org/ENCBS193VFU/

value: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/


title: Histone ChIP-seq from heart right ventricle (ENCLB206QFN)

description:
https://www.encodeproject.org/experiments/ENCSR902OEF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on heart right ventricle tissue male adult (66 years).
experiment encode accession: ENCSR902OEF
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR898WPF
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB206QFN
size range: 200-600

value: heart right ventricle

value: tissue


title: Control ChIP-seq from middle frontal area 46 (ENCLB894GFK)

description:
https://www.encodeproject.org/experiments/ENCSR836KPL/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years)
experiment encode accession: ENCSR836KPL
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-06-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB894GFK
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue

value: middle frontal area 46

value: 90 or above year

value: Rush University

value: ENCBS464LBN at ENCODE; https://www.encodeproject.org/ENCBS464LBN/

value: Derived from ENCODE donor ENCDO006DAA; https://www.encodeproject.org/ENCDO006DAA/


title: Mint-ChIP-seq from endodermal cell (ENCLB254NVA)

description:
https://www.encodeproject.org/experiments/ENCSR832USV/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on endodermal cell originated from H1
experiment encode accession: ENCSR832USV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR637MGY
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB254NVA

source_name: Homo sapiens male embryo endodermal in vitro differentiated cells originated from H1, preserved by flash-freezing

value: endodermal cell

value: in vitro differentiated cells

value: male

value: embryonic

value: not collected

value: Job Dekker, UMass

value: René Maehr

value: healthy

value: ENCBS180HZM at ENCODE; https://www.encodeproject.org/ENCBS180HZM/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: Mint-ChIP-seq from endodermal cell (ENCLB874ZPS)

description:
https://www.encodeproject.org/experiments/ENCSR832USV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on endodermal cell originated from H1
experiment encode accession: ENCSR832USV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR637MGY
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB874ZPS


title: TF ChIP-seq from middle frontal area 46 (ENCLB000QRC)

description:
https://www.encodeproject.org/experiments/ENCSR832TWW/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF TF ChIP-seq on middle frontal area 46 tissue male adult (82 years).
experiment encode accession: ENCSR832TWW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR745AVM
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB000QRC
size range: 200-600

source_name: Homo sapiens male adult (82 years) middle frontal area 46 tissue

value: CTCF

value: adult

value: 82 year

value: Bradley Bernstein, Broad

value: ENCBS145CHN at ENCODE; https://www.encodeproject.org/ENCBS145CHN/

value: Derived from ENCODE donor ENCDO407UTA; https://www.encodeproject.org/ENCDO407UTA/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB150VCY)

description:
https://www.encodeproject.org/experiments/ENCSR832EJX/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on middle frontal area 46 tissue female adult (86 years) with Alzheimer's disease.
experiment encode accession: ENCSR832EJX
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR564VBC
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB150VCY
size range: 200-600

value: middle frontal area 46

value: tissue

value: female

value: 86 year

value: Rush University

value: ENCBS797LUE at ENCODE; https://www.encodeproject.org/ENCBS797LUE/

value: Derived from ENCODE donor ENCDO997SGX; https://www.encodeproject.org/ENCDO997SGX/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB440YNC)

description:
https://www.encodeproject.org/experiments/ENCSR832EJX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on middle frontal area 46 tissue female adult (86 years) with Alzheimer's disease.
experiment encode accession: ENCSR832EJX
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR564VBC
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB440YNC
size range: 200-600


title: Mint-ChIP-seq from endodermal cell (ENCLB721BWJ)

description:
https://www.encodeproject.org/experiments/ENCSR832CNQ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on endodermal cell originated from H1
experiment encode accession: ENCSR832CNQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR637MGY
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB721BWJ

value: endodermal cell

value: in vitro differentiated cells

value: male

value: embryonic

value: not collected

value: Job Dekker, UMass

value: René Maehr


title: Histone ChIP-seq from heart right ventricle (ENCLB838TOE)

description:
https://www.encodeproject.org/experiments/ENCSR907JTW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on heart right ventricle tissue male adult (61 years).
experiment encode accession: ENCSR907JTW
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR891YGO
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB838TOE
size range: 200-600

value: heart right ventricle

value: adult

value: 61 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: nonischemic (EF 11% LVEDD 7.7; RV severe dilation, severe dysfunction)

value: ENCBS175LFH at ENCODE; https://www.encodeproject.org/ENCBS175LFH/

value: Derived from ENCODE donor ENCDO808ASZ; https://www.encodeproject.org/ENCDO808ASZ/


title: MCA948-W-1D

source_name: MCA948-W-1D Fibrosarcoma

tag: mouse genetic bckground

tag: mouse strain

value: Ncr1Cre R26DTA

tag: nk cell sensitive

value: Yes


title: TF ChIP-seq from heart left ventricle (ENCLB124TVH)

description:
https://www.encodeproject.org/experiments/ENCSR825NXC/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF TF ChIP-seq on heart left ventricle tissue female adult (56 years).
experiment encode accession: ENCSR825NXC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR261PLD
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB124TVH
size range: 200-600

source_name: Homo sapiens female adult (56 years) heart left ventricle tissue

value: CTCF

value: heart left ventricle

value: tissue

value: female

value: PGD

value: 56 year

value: ENCBS906ICM at ENCODE; https://www.encodeproject.org/ENCBS906ICM/

value: Derived from ENCODE donor ENCDO907YUG; https://www.encodeproject.org/ENCDO907YUG/


title: Mint-ChIP-seq from endodermal cell (ENCLB495GVZ)

description:
https://www.encodeproject.org/experiments/ENCSR832CNQ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on endodermal cell originated from H1
experiment encode accession: ENCSR832CNQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR637MGY
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB495GVZ

value: endodermal cell

value: in vitro differentiated cells

value: male

value: embryonic

value: not collected

value: Job Dekker, UMass

value: René Maehr

value: healthy

value: ENCBS180HZM at ENCODE; https://www.encodeproject.org/ENCBS180HZM/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB760TOJ)

description:
https://www.encodeproject.org/experiments/ENCSR830FOW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR830FOW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR404BIJ
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB760TOJ

value: primary cell

value: adult

value: 42 year

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: ENCBS591TQB at ENCODE; https://www.encodeproject.org/ENCBS591TQB/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB857RCU)

description:
https://www.encodeproject.org/experiments/ENCSR830FOW/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR830FOW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR404BIJ
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB857RCU


title: Control ChIP-seq from middle frontal area 46 (ENCLB453WVH)

description:
https://www.encodeproject.org/experiments/ENCSR745AVM/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on middle frontal area 46 tissue male adult (82 years).
experiment encode accession: ENCSR745AVM
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB453WVH
size range: 200-600

value: middle frontal area 46

value: tissue

value: 82 year

value: Rush University

value: ENCBS145CHN at ENCODE; https://www.encodeproject.org/ENCBS145CHN/

value: Derived from ENCODE donor ENCDO407UTA; https://www.encodeproject.org/ENCDO407UTA/


title: Control ChIP-seq from middle frontal area 46 (ENCLB215YXO)

description:
https://www.encodeproject.org/experiments/ENCSR745AVM/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on middle frontal area 46 tissue male adult (82 years).
experiment encode accession: ENCSR745AVM
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB215YXO
size range: 200-600

value: male


title: TF ChIP-seq from heart left ventricle (ENCLB619XGY)

description:
https://www.encodeproject.org/experiments/ENCSR825NXC/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF TF ChIP-seq on heart left ventricle tissue female adult (56 years).
experiment encode accession: ENCSR825NXC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR261PLD
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB619XGY
size range: 200-600

value: CTCF

value: heart left ventricle

value: female

value: PGD

value: 56 year

value: Shin Lin

value: ENCBS906ICM at ENCODE; https://www.encodeproject.org/ENCBS906ICM/

value: Derived from ENCODE donor ENCDO907YUG; https://www.encodeproject.org/ENCDO907YUG/


title: Histone ChIP-seq from heart right ventricle (ENCLB843UHX)

description:
https://www.encodeproject.org/experiments/ENCSR744VAH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on heart right ventricle tissue male adult (73 years).
experiment encode accession: ENCSR744VAH
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR145RXI
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB843UHX
size range: 200-600

value: heart right ventricle

value: adult

value: 73 year

value: Bradley Bernstein, Broad

value: ischemic (EF 35%, LVEDD 5.7; RV mildly dilated, moderate dysfunction)

value: ENCBS237SHK at ENCODE; https://www.encodeproject.org/ENCBS237SHK/

value: Derived from ENCODE donor ENCDO804CLC; https://www.encodeproject.org/ENCDO804CLC/


title: Histone ChIP-seq from heart right ventricle (ENCLB381TZX)

description:
https://www.encodeproject.org/experiments/ENCSR744VAH/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on heart right ventricle tissue male adult (73 years).
experiment encode accession: ENCSR744VAH
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR145RXI
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB381TZX
size range: 200-600

value: tissue


title: TF ChIP-seq from HepG2 (ENCLB428XCE)

description:
https://www.encodeproject.org/experiments/ENCSR830LDY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR830LDY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2021-08-13
lab: Richard Myers, HAIB
library encode accession: ENCLB428XCE
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens MEIS2

tag: line

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS890JJY at ENCODE; https://www.encodeproject.org/ENCBS890JJY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: Control ChIP-seq from middle frontal area 46 (ENCLB141NBE)

description:
https://www.encodeproject.org/experiments/ENCSR836KPL/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years)
experiment encode accession: ENCSR836KPL
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-06-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB141NBE
size range: 200-600

value: middle frontal area 46

tag: Sex

value: female

value: 90 or above year

value: Rush University

value: ENCBS464LBN at ENCODE; https://www.encodeproject.org/ENCBS464LBN/

value: Derived from ENCODE donor ENCDO006DAA; https://www.encodeproject.org/ENCDO006DAA/


title: TF ChIP-seq from HepG2 (ENCLB115JMN)

description:
https://www.encodeproject.org/experiments/ENCSR830LDY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR830LDY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2021-08-13
lab: Richard Myers, HAIB
library encode accession: ENCLB115JMN
fragmentation methods: sonication (generic)

tag: antibody

value: ENCBS700OCQ at ENCODE; https://www.encodeproject.org/ENCBS700OCQ/


title: Histone ChIP-seq from heart right ventricle (ENCLB166LAH)

description:
https://www.encodeproject.org/experiments/ENCSR821DYI/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on heart right ventricle tissue female adult (56 years).
experiment encode accession: ENCSR821DYI
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR278ACD
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB166LAH
size range: 200-600

source_name: Homo sapiens female adult (56 years) heart right ventricle tissue

value: heart right ventricle

value: tissue

tag: biosample encode accession

value: adult

value: 56 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: PGD

value: ENCBS664CKV at ENCODE; https://www.encodeproject.org/ENCBS664CKV/

value: Derived from ENCODE donor ENCDO907YUG; https://www.encodeproject.org/ENCDO907YUG/


title: Histone ChIP-seq from heart right ventricle (ENCLB917DYU)

description:
https://www.encodeproject.org/experiments/ENCSR741HEF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on heart right ventricle tissue male adult (61 years).
experiment encode accession: ENCSR741HEF
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR891YGO
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB917DYU
size range: 200-600

value: male

tag: dev stage

value: 61 year

value: nonischemic (EF 11% LVEDD 7.7; RV severe dilation, severe dysfunction)

value: ENCBS175LFH at ENCODE; https://www.encodeproject.org/ENCBS175LFH/

value: Derived from ENCODE donor ENCDO808ASZ; https://www.encodeproject.org/ENCDO808ASZ/


title: Histone ChIP-seq from heart right ventricle (ENCLB510OQJ)

description:
https://www.encodeproject.org/experiments/ENCSR821DYI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on heart right ventricle tissue female adult (56 years).
experiment encode accession: ENCSR821DYI
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR278ACD
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB510OQJ
size range: 200-600

value: female

tag: age


title: Histone ChIP-seq from heart right ventricle (ENCLB678MBE)

description:
https://www.encodeproject.org/experiments/ENCSR741HEF/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on heart right ventricle tissue male adult (61 years).
experiment encode accession: ENCSR741HEF
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR891YGO
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB678MBE
size range: 200-600

tag: lab


title: TF ChIP-seq from middle frontal area 46 (ENCLB556RCR)

description:
https://www.encodeproject.org/experiments/ENCSR813KUE/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on dorsolateral prefrontal cortex tissue male adult (78 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR813KUE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR086BNR
encode release date: 2021-07-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB556RCR
size range: 200-600

source_name: Homo sapiens male adult (78 years) middle frontal area 46 tissue

value: CTCF

value: middle frontal area 46

value: 78 year

tag: source

value: Rush University

value: ENCBS375CUK at ENCODE; https://www.encodeproject.org/ENCBS375CUK/

value: Derived from ENCODE donor ENCDO623FPG; https://www.encodeproject.org/ENCDO623FPG/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB605HZK)

description:
https://www.encodeproject.org/experiments/ENCSR814KSK/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on middle frontal area 46 tissue male adult (82 years).
experiment encode accession: ENCSR814KSK
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR745AVM
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB605HZK
size range: 200-600

value: tissue

value: adult

value: 82 year

value: Bradley Bernstein, Broad

value: ENCBS145CHN at ENCODE; https://www.encodeproject.org/ENCBS145CHN/

value: Derived from ENCODE donor ENCDO407UTA; https://www.encodeproject.org/ENCDO407UTA/


title: TF ChIP-seq from middle frontal area 46 (ENCLB736XTG)

description:
https://www.encodeproject.org/experiments/ENCSR813KUE/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on dorsolateral prefrontal cortex tissue male adult (78 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR813KUE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR086BNR
encode release date: 2021-07-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB736XTG
size range: 200-600

value: male


title: TF ChIP-seq from middle frontal area 46 (ENCLB771CRV)

description:
https://www.encodeproject.org/experiments/ENCSR832TWW/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF TF ChIP-seq on middle frontal area 46 tissue male adult (82 years).
experiment encode accession: ENCSR832TWW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR745AVM
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB771CRV
size range: 200-600


title: Control Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCLB942YEQ)

description:
https://www.encodeproject.org/experiments/ENCSR810LRH/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on CD8-positive naive resting alpha-beta T cell
experiment encode accession: ENCSR810LRH
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB942YEQ

source_name: Homo sapiens CD8-positive naive resting alpha-beta T primary cell

value: primary cell

value: not collected

value: unknown

value: John Stamatoyannopoulos

value: ENCBS749OUL at ENCODE; https://www.encodeproject.org/ENCBS749OUL/

value: Derived from ENCODE donor ENCDO930DIF; https://www.encodeproject.org/ENCDO930DIF/


title: Control Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCLB918BGI)

description:
https://www.encodeproject.org/experiments/ENCSR810LRH/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on CD8-positive naive resting alpha-beta T cell
experiment encode accession: ENCSR810LRH
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB918BGI


title: TF ChIP-seq from middle frontal area 46 (ENCLB223XNX)

description:
https://www.encodeproject.org/experiments/ENCSR740GKG/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on dorsolateral prefrontal cortex tissue female adult (86 years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR740GKG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR822YWX
encode release date: 2021-07-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB223XNX
size range: 200-600

source_name: Homo sapiens female adult (86 years) middle frontal area 46 tissue with Cognitive impairment

value: CTCF

value: middle frontal area 46

value: female

value: 86 year

value: ENCBS821RYQ at ENCODE; https://www.encodeproject.org/ENCBS821RYQ/

value: Derived from ENCODE donor ENCDO845GYA; https://www.encodeproject.org/ENCDO845GYA/