title: MEP SclCre JAK2V617F; Ezh2 -/- replicate6

status: Public on Jun 24 2016

data_processing:
Obtained single-end RNA-seq reads were mapped to the mouse genome assembly, version mm9, with RNA-STAR (Dobin et al., Bioinformatics 2013), with default parameters except for allowing only unique hits to genome (outFilterMultimapNmax=1) and  filtering reads without evidence in spliced junction table (outFilterType="BySJout").
All subsequent gene expression data analysis was done within the R software (R Foundation for Statistical Computing, Vienna, Austria). Raw reads and mapping quality was assessed by the qQCreport function from the R/Bioconductor software package QuasR (Gaidatzis et al., 2015).
Using RefSeq mRNA coordinates from UCSC (genome.ucsc.edu, downloaded in June 2014) and the qCount function from QuasR package, we quantified gene expression as the number of reads that started within any annotated exon of a gene.
Genome_build: mm9
Supplementary_files_format_and_content: tab-delimited text files with EntrezId  (1st column), total length of exons in bp (2nd column) and raw counts for each sample (3rdcolumn)

source_name: megakaryocyte erythrocyte progenitor cells

extract_protocol:
Total RNA was isolated from 230,000 FACS-sorted MEP cells using Trizol-LS solution and was quality-checked on the Bioanalyzer instrument (Agilent Technologies, Santa Clara, CA, USA) using the RNA 6000 Pico.
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: genotype

value: SclCre JAK2V617F

value: F


title: MEP SclCre JAK2V617F; Ezh2 -/- replicate4

type: SRA

city: Basel

first: DBM Bioinformatics

last: Core Facility

state: BS

address: Hebelstrasse 20

department: Departement of Biomedicine

country: Switzerland

institute: University of Basel

library_source: transcriptomic

molecule: total RNA

organism: Mus musculus

tag: gender


title: MEP SclCre JAK2V617F; Ezh2 -/- replicate5


title: BM_Isotype_12

status: Public on Sep 19 2016

type: RNA

description: tissue: BM, treatment: Isotype, annimal id: 12, batch: 20160107

hyb_protocol: 100 ng of total RNA were hybridized overnight at 65°C with the nanostring Mm v2 Inflammation codeset according to manufacturer specification. Target-probe complexes were purified on the nCounter Prep Station

scan_protocol: Cartridges were scaned on the Gen1 nCounter Digital Analyzer asking for 1155 FOV

data_processing: The read.markup.RCC function the R package NanoStringNorm (Waggott, D.M., 2015) was used to read the raw count data. Raw counts were scale-normalized using the TMM method implemented in the calcNormFactors function of the R package edgeR (McCarthy et al. 2012). The transformed counts (log-CPM values) were subsequently used for linear modelling.

source_name: Bone Marrow

extract_protocol: Samples were harvested directly in Trizol, after homogeneization of the tissue, phase separation was performed with chloroform and RNA was precipitated with Isopropanol and washed with ethanol according to standard procedures.

treatment_protocol: αIFNAR and isotype control antibody were administred i.p. one day prior to infection at a dose of 1mg per mouse. αGR-1 antibody was administered 2 days and half a day prior to infection at a dose of 500ug ip

tag: strain

tag: tissue

value: Bone Marrow

value: male

tag: age

value: 8 weeks old


title: BM_Isotype_11

description: tissue: BM, treatment: Isotype, annimal id: 11, batch: 20160107


title: BM_anti-Gr1_1

description: tissue: BM, treatment: anti-Gr1, annimal id: 1, batch: 20160107


title: aIFNAR_9

description:
treatment: aIFNAR, annimal id: 9, batch: 2
processed data: counts.tsv, column A_4

data_processing:
Sequenced reads were mapped to mm9 whole genome using STAR version 020201 (Dobin et al., Bioinformatics 2013) with parameters --runMode alignReads --outFilterType BySJout --outFilterMultimapNmax 1 --outSAMtype BAM SortedByCoordinate --outSAMunmapped Within
Raw reads and mapping quality was assessed by the qQCReport function from the R package QuasR (Gaidatzis et al., 2015).
Expression of RefSeq genes (UCSC version downloaded 2013-07-25) was quantified by counting reads mapping into exons using the qCount function of QuasR.
Genome_build: mm9
Supplementary_files_format_and_content: tab-delimited text file with EntrezId (1st column), gene symbol (2nd column), gene name (3rd column), total length of exons in bp (4th column) and followed by raw counts for each sample (columns 5-12)

molecule: polyA RNA

source_name: spleen

extract_protocol:
Cells were FACS-sorted directly ex-vivo into Trizol and RNA was extracted using Direct-zolTM RNA MicroPrep kit (Zymo research)
Library preparation was performed with a TruSeq kit (Illumina) according to the provider’s protocol.

treatment_protocol: αIFNAR and isotype control antibody were administred i.p. one day prior to infection at a dose of 1mg per mouse.

value: spleen

value: 10 weeks old

tag: cell type

value: KL25HL B cell

tag: cell markers


title: MEP SclCre JAK2V617F; Ezh2 -/- replicate3


title: MEP SclCre JAK2V617F; Ezh2 -/- replicate2


title: LT-HSC SclCre JAK2V617F; Ezh2 +/- replicate5 batch2

source_name: heamatopoietic stem cells

extract_protocol:
Total RNA was isolated from 1,000 FACS-sorted LT-HSCs using Pico-Pure RNA isolation kit (ARCTURUS) and was quality-checked on the Bioanalyzer instrument (Agilent Technologies, Santa Clara, CA, USA) using the RNA 6000 Pico.
RNA library was prepared for sequencing using by SMARTer Low Input RNAbkit (Clontech, CA, USA) with Low Input Library Prep Kit (Clontech, CA, USA).

tag: experimental batch

value: M


title: LT-HSC SclCre JAK2V617F; SclCre replicate4 batch2


title: BM_uninfected_15

description: tissue: BM, treatment: uninfected, annimal id: 15, batch: 20151217


title: LT-HSC SclCre JAK2V617F; Ezh2 +/- replicate4 batch2


title: MEP SclCre JAK2V617F; Ezh2 +/- replicate6


title: MEP SclCre JAK2V617F; Ezh2 -/- replicate1


title: MEP SclCre JAK2V617F; Ezh2 +/- replicate5


title: LT-HSC SclCre JAK2V617F; SclCre replicate3 batch2


title: MEP SclCre JAK2V617F; Ezh2 +/- replicate3


title: Isotype_12

description:
treatment: Isotype, annimal id: 12, batch: 2
processed data: counts.tsv, column C_4


title: LT-HSC SclCre JAK2V617F; Ezh2 +/- replicate3 batch2


title: LT-HSC SclCre JAK2V617F; Ezh2 -/- replicate3 batch2


title: MEP SclCre JAK2V617F; Ezh2 +/- replicate1


title: LT-HSC SclCre; Ezh2 +/- replicate4 batch2

value: SclCre


title: MEP SclCre JAK2V617F; Ezh2 +/- replicate2


title: MEP SclCre JAK2V617F replicate1


title: LT-HSC SclCre; Ezh2 -/- replicate3 batch2


title: MEP ScleCre; Ezh2 -/- replicate4

value: ScleCre


title: MEP SclCre JAK2V617F replicate4


title: LT-HSC SclCre; Ezh2 +/- replicate3 batch2


title: MEP ScleCre; Ezh2 -/- replicate3


title: MEP ScleCre; Ezh2 -/- replicate2


title: LT-HSC SclCre JAK2V617F; Ezh2 -/- replicate2 batch2


title: LT-HSC SclCre replicate4 batch2


title: MEP ScleCre; Ezh2 -/- replicate1


title: MEP SclCre JAK2V617F; Ezh2 +/- replicate4


title: MEP ScleCre; Ezh2 +/- replicate5


title: MEP ScleCre; Ezh2 +/- replicate2


title: MEP ScleCre replicate5


title: LT-HSC SclCre JAK2V617F; Ezh2 -/- replicate1 batch2


title: MEP ScleCre replicate4


title: MEP ScleCre; Ezh2 +/- replicate4


title: LT-HSC SclCre JAK2V617F; Ezh2 +/- replicate2 batch2


title: MEP SclCre JAK2V617F replicate3


title: LT-HSC SclCre JAK2V617F; Ezh2 +/- replicate1 batch2


title: MEP ScleCre replicate1


title: LT-HSC SclCre JAK2V617F; SclCre replicate2 batch2


title: LT-HSC SclCre JAK2V617F; SclCre replicate1 batch2


title: LT-HSC SclCre; Ezh2 +/- replicate1 batch2


title: LT-HSC SclCre; Ezh2 +/- replicate2 batch2


title: LT-HSC SclCre; Ezh2 -/- replicate1 batch2


title: LT-HSC SclCre replicate2 batch2


title: MEP ScleCre; Ezh2 +/- replicate1


title: LT-HSC SclCre JAK2V617F; Ezh2 -/- replicate3 batch1


title: LT-HSC SclCre JAK2V617F; Ezh2 -/- replicate1 batch1


title: MEP ScleCre replicate2


title: LT-HSC SclCre JAK2V617F; Ezh2 +/- replicate3 batch1


title: MEP SclCre JAK2V617F replicate2


title: LT-HSC SclCre JAK2V617F; Ezh2 +/- replicate2 batch1


title: LT-HSC SclCre JAK2V617F; SclCre replicate2 batch1


title: MEP ScleCre replicate3


title: LT-HSC SclCre JAK2V617F; Ezh2 +/- replicate1 batch1


title: LT-HSC SclCre JAK2V617F; SclCre replicate1 batch1


title: LT-HSC SclCre; Ezh2 +/- replicate3 batch1


title: LT-HSC SclCre; Ezh2 +/- replicate2 batch1


title: LT-HSC SclCre; Ezh2 -/- replicate1 batch1


title: LT-HSC SclCre replicate2 batch1


title: LT-HSC SclCre; Ezh2 +/- replicate1 batch1


title: LT-HSC SclCre; Ezh2 -/- replicate2 batch2


title: LT-HSC SclCre replicate1 batch1


title: 3999547162_R04C02

status: Public on Apr 18 2016

type: genomic

city: Atlanta

first: Alicia

last: Smith

address: 101 Woodruff Circle

country: USA

institute: Emory University

description: HumanMethylation450 BeadChip - standard protocol

scan_protocol: BeadStudio

data_processing:
non-normalized, background subtracted. CpGAssoc package was used to filter out CpG sites that have a Detection P-Value greater than 0.001 in more than 10% of the samples and samples that have a Detection P-Value greater than 0.001 in more than 5% of the CpG sites. After this, cross-reactive probes were removed and normalization was performed using BMIQ
value definition: beta-values

label: biotin

molecule: genomic DNA

organism: Homo sapiens

source_name: Whole Blood

extract_protocol: Invitrogen Puregene Genomic DNA kit

tag: Sex

value: Male

tag: race

value: caucasian

value: BloodSpot

tag: ga weeks


title: 3999547162_R05C02

value: Female


title: 3999547162_R05C01


title: 3999547162_R06C02

value: other


title: 3999547162_R06C01


title: 101103430068_R02C02

status: Public on Apr 19 2016

data_processing: non-normalized, background subtracted. CpGAssoc package was used to filter out CpG sites that have a Detection P-Value greater than 0.001 in more than 10% of the samples and samples that have a Detection P-Value greater than 0.001 in more than 5% of the CpG sites. After this, cross-reactive probes were removed and normalization was performed using BMIQ

value: Caucasian


title: 3999547162_R02C01


title: 3999547162_R03C01


title: 3999547162_R02C02


title: 101103430130_R02C01


title: 101103430068_R02C01


title: 3999547162_R01C02


title: 3999547162_R01C01


title: 3999547151_R06C02


title: 100994770046_R05C02

value: Mixed


title: 3999547151_R06C01


title: 100994770067_R05C02


title: 101103430130_R05C02


title: 101103430130_R05C01


title: 3999547151_R05C02


title: 3999547151_R05C01


title: 100994770020_R02C01


title: LT-HSC SclCre JAK2V617F; Ezh2 -/- replicate2 batch1

value: SclCre JAK2V617F

value: F


title: 100994770046_R02C02


title: 101103430068_R05C01


title: 3999547151_R03C02


title: 3999547162_R03C02


title: 3999547151_R02C02


title: 3999547151_R02C01


title: 3999547151_R04C02


title: 3999547151_R03C01


title: 3999547151_R04C01


title: 100994770028_R02C02

value: Hispanic


title: 3999547151_R01C01


title: 3999547093_R06C01


title: 100994770067_R02C02

value: African American


title: 3999547093_R06C02


title: 100994770028_R02C01


title: 3999547093_R05C02


title: 100994770067_R05C01


title: 101103430068_R05C02


title: 100994770028_R05C01


title: 100994770020_R05C02


title: 3999547093_R04C02


title: 3999547093_R04C01


title: 3999547093_R03C02


title: 100994770067_R02C01


title: 100994770046_R05C01


title: 3999547093_R03C01


title: 100994770020_R05C01


title: 100994770020_R02C02


title: 3999547093_R02C02


title: 3999547093_R02C01


title: 100994770028_R05C02


title: 3999547093_R01C01


title: 3999095165_R06C01


title: 3999547093_R01C02


title: 3999095165_R05C02


title: 3999095165_R05C01


title: 100994770046_R02C01


title: 101103430130_R02C02


title: 3999095165_R04C01


title: 3999095165_R03C01


title: 3999095165_R04C02


title: 3999095165_R03C02


title: 3999095165_R01C02


title: 3999095165_R02C02


title: 3999095165_R02C01


title: 3999095165_R01C01


title: 3999078028_R06C01


title: 3999095165_R06C02


title: 3999078028_R06C02


title: 3999078028_R05C01


title: 3999078028_R05C02


title: 3999078028_R04C02


title: 3999078028_R04C01


title: 3999078028_R03C02


title: 3999078028_R02C02


title: 3999078028_R02C01


title: 3999078028_R01C02


title: 3999002033_R06C02


title: 3999078028_R01C01


title: 3999547162_R04C01


title: 3999002033_R06C01


title: 3999002033_R05C02


title: 3999002033_R04C02


title: 3999002033_R02C02


title: 3999002033_R03C02


title: 3999547151_R01C02


title: 3998998224_R06C02


title: 3999002033_R01C01


title: 3999002033_R04C01


title: 3999002033_R01C02


title: 3998998224_R06C01


title: 3999002033_R02C01


title: 3998998224_R05C01


title: 3998998224_R04C02


title: 3999002033_R05C01


title: 3999002033_R03C01


title: 3998998224_R04C01


title: 3998998224_R05C02


title: 3998998224_R02C02


title: 3998998224_R03C02


title: 3999078028_R03C01


title: 3998998224_R02C01


title: 3998998224_R01C02


title: 3998998224_R01C01


title: 3998998205_R06C02


title: 3998998205_R06C01


title: 3998998205_R05C02


title: 3998998205_R05C01


title: 3998998205_R04C02


title: 3998998205_R02C01


title: 3998998205_R01C01


title: 3998998178_R06C02


title: 3998998184_R02C02


title: 3998998205_R03C01


title: 3998998184_R04C01


title: 3998998178_R06C01


title: 3998998184_R05C02


title: 3998998178_R05C02


title: 3998998184_R05C01


title: 3998998178_R04C01


title: 3998998184_R06C01


title: 3998998224_R03C01


title: 3998998184_R04C02


title: 3998998178_R05C01


title: 3998998178_R04C02


title: 3998998184_R03C01


title: 3998998184_R03C02


title: 3998998205_R01C02


title: 3998998178_R03C02


title: 3998998205_R02C02


title: 3998998184_R01C01


title: 3998998178_R01C01


title: 3998998178_R02C01


title: 3998998178_R01C02


title: 3998998178_R02C02


title: 3998998178_R03C01


title: 3998998205_R03C02


title: 3998998184_R01C02


title: 3998998157_R05C01


title: 3998998157_R06C01


title: 3998998157_R05C02


title: 3998998157_R04C01


title: 3998998157_R04C02


title: 3998998157_R03C02


title: 3998998157_R06C02


title: 3998998157_R01C01


title: 3998998151_R05C02


title: 3998998151_R05C01


title: 3998998157_R02C01


title: 3998998157_R02C02


title: 3998998151_R06C01


title: 3998998157_R01C02


title: 3998998157_R03C01


title: 3998998151_R02C01


title: 3998998151_R03C01


title: 3998998151_R01C02


title: 3998998151_R04C01


title: 3998998151_R03C02


title: 3998998151_R01C01


title: 3998998151_R04C02


title: 3999547093_R05C01


title: 3998998135_R05C01


title: 3998998135_R05C02


title: 3998998135_R04C02


title: 3998998135_R06C02


title: 3998998135_R06C01


title: 3998998135_R04C01


title: 3998998135_R03C02


title: 3998998135_R03C01


title: 3998998135_R02C02


title: 3998998135_R02C01


title: 3998998112_R06C01


title: 3998998151_R02C02


title: 3998998135_R01C02


title: 3998998112_R05C02


title: 3998998112_R06C02


title: 3998998112_R04C02


title: 3998998112_R04C01


title: 3998998112_R02C02


title: 3998998112_R05C01


title: 3998998112_R01C02


title: 3998998112_R03C01


title: 3998998112_R01C01


title: 3998998050_R06C01


title: 3998998050_R04C02


title: 3998998050_R04C01


title: 3998998050_R06C02


title: 3998998050_R02C02


title: 3998998050_R03C01


title: 3998952025_R06C01


title: 3998998050_R02C01


title: 3998952025_R06C02


title: 3998952025_R05C01


title: 3998952025_R05C02


title: 3998952025_R04C01


title: 3998952025_R03C02


title: 3998952025_R03C01


title: 3998952025_R02C02


title: 3998998112_R02C01


title: 3998952025_R04C02


title: 3998952025_R02C01


title: 3998998050_R03C02


title: 3998998050_R05C01


title: 3998952025_R01C01


title: 3998952025_R01C02


title: P9WB7D

status: Public on Apr 07 2016

value: Australian

tag: sample type


title: P9WB0D


title: P9WB28


title: P10WB32


title: P10WB1D


title: P9WB1D


title: P9WB40


title: 8221916065_R01C02

status: Public on Mar 11 2016

hyb_protocol: HumanMethylation450 BeadChip - standard protocol

data_processing: non-normalized, background subtracted. CpGAssoc package was used to filter out CpG sites that have a Detection P-Value greater than 0.001 in more than 10% of the samples and samples that have a Detection P-Value greater than 0.001 in more than 5% of the CpG sites.

source_name: Cord Blood

value: Cord Blood


title: P10WB36


title: P10WB40


title: P10WB28


title: 8221916065_R05C02

label_protocol: HumanMethylation450 BeadChip - standard protocol


title: 8221916119_R01C01


title: 8221916065_R01C01


title: 8221916040_R04C02


title: P10WB7D


title: 8221916065_R06C01


title: 8221916065_R04C01


title: 8221916040_R06C01


title: 8221916119_R04C02


title: 8221916065_R02C02


title: 8221916065_R02C01


title: P9WB32


title: P10WB0D


title: 8221916045_R05C01


title: 8221916040_R04C01


title: 8221916040_R02C01


title: 8221916040_R03C02


title: P9WB36


title: 8221916119_R05C01


title: XENO.3

status: Public on Jan 25 2016

description: Sample 12

data_processing:
The RNA-seq data (51bp read length) were mapped to the H.sapiens genome (hg19) with the R package QuasR (www.bioconductor.org, version 1.2.2 ) using the included spliced alignment algorithm SpliceMap.
The command used to perform the alignments was "proj <- qAlign("samples.txt", "Bsgenome.Hsapiens.UCSC.hg19", splicedAlignment=TRUE)".
Gene expression was quantified by counting the number of reads that started within any of the exons belonging to a particular gene (using qCount function from QuasR package and coordinates of Refseq genes from genome.ucsc.edu, downloaded in January 2014).
Genome_build: hg19
Supplementary_files_format_and_content: wig files were generated using qExportWig function from QuasR package. Scores represent number of reads in 100bp windows.

growth_protocol: For standard 2D cell cultures we used 75cm2 culture flasks; Static 7-day culture was performed by statical seeding of the HT-29 cell line on a collagen scaffold; for 3D perfusion cultures over 7 days, we took advantage of a previously developed perfusion bioreactor system (Wendt et al. 2003); Xenograft were obtained by injection of HT-29 cells subcoutanously in NSCID-mice until 6mm size.

extract_protocol:
Total cellular RNA was extracted by using NucleoSpin RNA II kit (Macherey-Nagel) and reverse transcribed by standard methods
Non-stranded RNA libraries were prepared by using the Illumina TruSeq sample preparation kit and sequenced on Illumina HiSeq 2000 sequencer (Illumina)

tag: cell line

value: colorectal cell line

tag: culture conditions

value: xenograft


title: XENO.2

description: Sample 11


title: Stat.3

description: Sample 9

source_name: HT-29_3D static

value: Static 3D


title: Stat.2

description: Sample 8


title: Tcf7l2_OPC

status: Public on Feb 19 2016

city: Cincinnati

first: Richard

last: Lu

state: OH

address: 3333 Burnet Ave

department: CBDI

institute: Cincinnati Children's Hospital Medical Center

description: Tcf7l2 chIP genomic DNA

library_source: genomic

data_processing:
peak calling was performed using MACS (Model-based Analysis of ChIP-seq) version 1.4.2 (liulab.dfci.harvard.edu/MACS) with default parameters to get primary binding regions.
These primary regions were further filtered using following criteria to define a more stringent protein-DNA interactome: 1) peak height 15; 2) an enrichment of 10-fold.
Genome_build: All sequencing data were mapped to RGSC Rnor_5.0 / rn5 (March 2012)
Supplementary_files_format_and_content: Wig files

organism: Rattus norvegicus

source_name: oligodendrocyte progenitor cell

growth_protocol: Primary rat OPCs were isolated from cortices of pups at P2 using a differential detachment procedure as previously described (Y. Chen, V. Balasubramaniyan, J. Peng, E.C. Hurlock, M. Tallquist, J. Li, Q.R. Lu Isolation and culture of rat and mouse oligodendrocyte precursor cells Nat. Protoc., 2 (2007), pp. 1044–1051).

extract_protocol:
ChIP assays were performed as previously described with minor modifications (Q. Weng, Y. Chen, H. Wang, X. Xu, B. Yang, Q. He, W. Shou, Y. Chen, Y. Higashi, V. van den Berghe, et al. Dual-mode modulation of Smad signaling by Smad-interacting protein Sip1 is required for myelination in the central nervous system Neuron, 73 (2012), pp. 713–728).
The ChIP-seq libraries were prepared using NEBNext® ChIP-Seq Library Prep Master Mix Set for Illumina as recommended by the manufacturer.

treatment_protocol: Isolated rat OPCs were collected or grown in the OPC Growth Medium (Sato medium supplemented mitogens 10 ng/ml PDGF-AA and 20 ng/ml bFGF), and differentiated in Oligodendrocyte Differentiation Medium (Sato medium supplemented with 15 nM thyroid hormone T3 and 10 ng/ml ciliary neurotrophic factor).

value: primary cell culture from P2 SD rat pups

tag: culture condition

value: proliferation medium

tag: chip antibody

value: Tcf4 (Santa Cruz, Cat# SC-8631, Lot# J0709)


title: Tcf7l2_mOL

description: Tcf7l2 chIP genomic DNA

source_name: mature oligodendrocyte

value: T3 treated for 3 days


title: Tcf7l2_iOL

description: Tcf7l2 chIP genomic DNA

source_name: immature oligodendrocyte

value: T3 treated for 1 day


title: 8221916045_R06C01

value: Female


title: XENO.1

description: Sample 10


title: Perf.3

description: Sample 6

source_name: HT-29_3D perfusion

value: Perfusion 3D


title: 8221916119_R02C02


title: Stat.1

description: Sample 7


title: 8221916119_R04C01

value: Male


title: Perf.2

description: Sample 5


title: Perf.1

description: Sample 4


title: 2D.3

description: Sample 3


title: 2D.2

description: Sample 2


title: 2D.1

description: Sample 1


title: 8221916045_R03C02


title: 8221916045_R05C02


title: p53-/-RBPjk-/- tumor rep3

status: Public on Dec 03 2015

hyb_protocol: Affymetrix GeneChip Mouse Gene 1.0 ST Array was used. Standard Affymetrix protocol by ATLAS Biolabs GmbH, Germany

data_processing: Arrays were normalized by RMA (oligo package from Bioconductor).

source_name: p53-/-RBPjk-/- tumor

growth_protocol: Brain tumors were genetically induced in transgenic mice. Tissue was harvested when mice showed behavioral symptoms of tumor formation.

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: Mice were euthanized and their brains were isolated. Brain tumors were identified by green fluorescent protein (GFP) expression from a Cre-inducible GFP reporter, micro-dissected, mechanically dissociated and placed in Trizol solution.

tag: genotype pdgfb gene

value: wt

tag: genotype trp53

value: KO

tag: genotype rbpj gene

value: brain tumor


title: PDGF+p53-/-RBPjk-/- tumor rep2

scan_protocol: Standard Affymetrix protocol by ATLAS Biolabs GmbH, Germany

source_name: PDGF+p53-/-RBPjk-/- tumor

value: over expressed


title: 8221916045_R03C01

tag: gender

value: African American


title: p53-/-RBPjk-/- tumor rep4

label_protocol: Standard Affymetrix protocol by ATLAS Biolabs GmbH, Germany

tag: tissue


title: p53-/-RBPjk-/- tumor rep2


title: PDGF+p53-/-RBPjk-/- tumor rep4


title: p53-/-RBPjk-/- tumor rep1


title: 8221916119_R03C01

value: Cord Blood


title: PDGF+p53-/-RBPjk-/- tumor rep3


title: 8221916040_R01C02


title: PDGF+p53-/- tumor rep4

source_name: PDGF+p53-/- tumor


title: PDGF+p53-/- tumor rep1


title: PDGF+p53-/-RBPjk-/- tumor rep1


title: control brain tissue rep4

source_name: control brain tissue

value: normal brain


title: 8221916065_R06C02


title: PDGF+p53-/- tumor rep3


title: 8221916040_R05C01


title: control brain tissue rep3


title: ChIP H3K4me3 AML_3

status: Public on Nov 24 2015

city: Nijmegen

first: Joost

last: Martens

state: Nederland

address: Geert Grooteplein 28

department: RIMLS

country: Netherlands

institute: Radboud University

description: chromatin IP (ChIP-seq)

data_processing:
Basecalls performed using CASAVA
Reads were aligned to the hg19 genome assembly (see characteristics) BWA
Peaks were called using MACS2 on settings: q 0.01
Genome_build: All ChIP-seq tracks were mapped to genome build HG19
Supplementary_files_format_and_content: wig files were generated (extended to 300bps) with regions having more than 1 read in a window of 10 bps

extract_protocol:
Chromatin was sonicated and used for ChIP seq using specific antibodies (avialable on suplementry table).
ChIP seq libraries were preapared according to  Illumina's standard protocol.

value: AML

tag: antibody target

tag: company

value: Abcam

tag: catalogue number

tag: reference genome


title: ChIP KDM2B AML_4

description: chromatin IP (ChIP-seq)


title: 8221916065_R03C01


title: ChIP H3K4me3 AML_4

description: chromatin IP (ChIP-seq)


title: ChIP H2AKll9ub AML_2

description: chromatin IP (ChIP-seq)

value: Cell Signaling Technology


title: ChIP H3K4me3 AML_5

description: chromatin IP (ChIP-seq)

tag: cell type

value: PBSC


title: ChIP KDM2B mobPBSC

description: chromatin IP (ChIP-seq)

source_name: mobPBSC


title: ChIP H3K4me3 AML_2

description: chromatin IP (ChIP-seq)


title: 8221916119_R05C02

tag: race


title: 8221916119_R02C01

tag: ga weeks


title: control brain tissue rep1


title: ChIP H3K4me3 AML_1

description: chromatin IP (ChIP-seq)


title: ChIP KDM2B AML_3

description: chromatin IP (ChIP-seq)


title: 8221916045_R04C01


title: control brain tissue rep2


title: 8221916119_R01C02


title: ChIP H2AKll9ub AML_5

description: chromatin IP (ChIP-seq)


title: 8221916045_R02C01


title: ChIP KDM2B AML_5

description: chromatin IP (ChIP-seq)


title: 8221916119_R03C02


title: ChIP H3K4me3 AML_6

description: chromatin IP (ChIP-seq)


title: ChIP H3K4me3 mobPBSC 2

description: chromatin IP (ChIP-seq)


title: ChIP H3K27me3 AML_2

description: chromatin IP (ChIP-seq)

value: Millipore


title: 8221916040_R02C02


title: ChIP KDM2B AML_1

description: chromatin IP (ChIP-seq)


title: ChIP H2AKll9ub AML_1

description: chromatin IP (ChIP-seq)


title: ChIP H3K27me3 AML_3

description: chromatin IP (ChIP-seq)


title: 8221916040_R05C02


title: ChIP H3K27me3 AML_6

description: chromatin IP (ChIP-seq)


title: ChIP H3K27me3 AML_5

description: chromatin IP (ChIP-seq)


title: ChIP H3K27me3 AML_4

description: chromatin IP (ChIP-seq)


title: ChIP H2AKll9ub AML_6

description: chromatin IP (ChIP-seq)


title: ChIP KDM2B AML_6

description: chromatin IP (ChIP-seq)


title: ChIP H3K27me3 mobPBSC

description: chromatin IP (ChIP-seq)


title: ChIP H3K27me3 AML_1

description: chromatin IP (ChIP-seq)


title: ChIP KDM2B AML_2

description: chromatin IP (ChIP-seq)


title: ChIP H2AKll9ub mobPBSC

description: chromatin IP (ChIP-seq)


title: ChIP H3K4me3 mobPBSC 1

description: chromatin IP (ChIP-seq)


title: ChIP H2AKll9ub AML_3

description: chromatin IP (ChIP-seq)


title: CBX2_gfp

description:
chromatin IP (ChIP-seq)
C1KN6ACXX_2_3581

data_processing:
Basecalls performed using CASAVA
Reads were aligned to the hg19 genome assembly (see characteristics) BWA
Genome_build: HG19
Supplementary_files_format_and_content: wig files were generated (extended to 300bps) with regions having more than 1 read in a window of 10 bps

source_name: K562_GFP fusion protein

growth_protocol: The (human) erythromyeloblastoid leukemia cell line K562 was cultured in RPMI 1640 (containing L-glutamine) supplemented with 10% FCS and 1% penicillin/streptomycin (PAA Laboratories)

extract_protocol:
Chromatin immune precipitation (ChIP) was essentially performed as described previously (Frank et al., 2001). Briefly, K562 cells were transduced with the lentiviral GFP-fusion vectors encoding GFP-CBX2, PCGF1-GPF, MEL18/PCGF2-GFP, BMI1/PCGF4-GFP, GFP-RING1A or GFP-RING1B. K562 cells expressing GFP-fusions at relatively low levels were sorted and expanded and subsequently crosslinked. ChIP reactions were performed using the following antibodies: anti-GFP (ab290, Abcam), anti-H3K27me3 (07-449, Millipore),  and anti-H2AK119ub (D27C4, Cell Signaling Technology). ChIP efficiencies were determined by qPCR. Sequencing samples were prepared according to the manufacturer's protocol (Illumina). End repair was performed using the precipitated DNA using Klenow and T4 PNK. A 3’ protruding A base was generated using Taq polymerase and adapters were ligated. The DNA was loaded on gel and a band corresponding to ~300 bp (ChIP fragment + adapters) was excised. The DNA was isolated, amplified by PCR and used for cluster generation on the Illumina HiSeq 2000 genome analyze.
ChIP seq libraries were preapared according to  Illumina's standard protocol.

treatment_protocol: Lentiviral transfection with GFP contruct was used for stable expression of the GFP fusion proteins in the K562 cells (van den Boom et al., 2013). After stable transfection validation chromatin extraction was performed as below.

value: erythromyeloblastoid leukemia cells

tag: genotype/variation

value: expressing CBX2-GFP fusion protein

value: Anti-GFP antibody

tag: chip antibody vendor

tag: chip antibody cat. #


title: low_GFP

description:
chromatin IP (ChIP-seq)
D1YHUACXX_2_3582

source_name: K562_GFP control

tag: cell line

value: expressing GFP control protein


title: PCGF1_GFP

description:
chromatin IP (ChIP-seq)
C2L8EACXX_3_4401

value: expressing PCGF1-GFP fusion protein

tag: chip antibody


title: H2AKll9ub

description:
chromatin IP (ChIP-seq)
C2L8EACXX_3_4403

source_name: K562_wild type

value: wild type (control)


title: 8221916045_R01C01

value: Female


title: RINGA1

description:
chromatin IP (ChIP-seq)
C25LHACXX_6_3924

value: expressing RINGA1-GFP fusion protein


title: MEL18_gfp

description:
chromatin IP (ChIP-seq)
C25LHACXX_6_3923

value: expressing MEL18-GFP fusion protein


title: H3K27me3

description:
chromatin IP (ChIP-seq)
C2L8EACXX_3_4402


title: 6361

status: Public on Nov 20 2015

description:
HumanMethylation450 BeadChip - standard protocol
6229076101_R06C02

hyb_protocol: Standard Illumina protocol, HumanMethylation450

scan_protocol: Standard Illumina protocol, BeadStudio

data_processing: beta-values (non-normalized, background subtracted), BeadStudio

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

value: Yes

tag: treatment for depression

value: No

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: current stress

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index

value: whole Blood

tag: race/ethnicity

value: Caucasian


title: 9154

description:
HumanMethylation450 BeadChip - standard protocol
6229076101_R06C01

label_protocol: Standard Illumina protocol, HumanMethylation450

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: tissue


title: 6157

description:
HumanMethylation450 BeadChip - standard protocol
6229076089_R04C01

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: current stress

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score


title: 6991

description:
HumanMethylation450 BeadChip - standard protocol
6229076102_R04C02

tag: Sex

value: Male

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index

tag: race/ethnicity


title: 6748

description:
HumanMethylation450 BeadChip - standard protocol
6229076089_R05C01

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: tissue


title: 8491

description:
HumanMethylation450 BeadChip - standard protocol
6229076086_R05C02

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: current stress

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score


title: 7162

description:
HumanMethylation450 BeadChip - standard protocol
6229076053_R06C02

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index

tag: race/ethnicity


title: 7173

description:
HumanMethylation450 BeadChip - standard protocol
6229076102_R05C02

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: network life stress

tag: personal life stress

tag: tissue


title: 8777

description:
HumanMethylation450 BeadChip - standard protocol
6229076067_R06C02

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: current stress

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score


title: 8344

description:
HumanMethylation450 BeadChip - standard protocol
6229076067_R05C02

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index

tag: race/ethnicity


title: 6740

description:
HumanMethylation450 BeadChip - standard protocol
6229068150_R06C02

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: tissue


title: 8132

description:
HumanMethylation450 BeadChip - standard protocol
6229068161_R06C01

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: current stress

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

value: Mixed


title: BMI1_gfp

description:
chromatin IP (ChIP-seq)
C25LHACXX_6_3926

tag: cell line

tag: cell type

tag: genotype/variation

value: expressing BMI1-GFP fusion protein

tag: chip antibody

tag: chip antibody vendor

value: Abcam

tag: chip antibody cat. #


title: RINGB1

description:
chromatin IP (ChIP-seq)
C25LHACXX_6_3925

value: erythromyeloblastoid leukemia cells

value: expressing RINGB1-GFP fusion protein


title: 8864

description:
HumanMethylation450 BeadChip - standard protocol
6229068117_R06C02

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index

tag: tissue

tag: race/ethnicity


title: 6446

description:
HumanMethylation450 BeadChip - standard protocol
6229068092_R06C01

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: current stress

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score


title: 9805

description:
HumanMethylation450 BeadChip - standard protocol
6229068089_R06C01

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: posttraumatic stress disorder symptom scale total score


title: 9367

description:
HumanMethylation450 BeadChip - standard protocol
6164647077_R02C01

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: body mass index

tag: tissue

tag: race/ethnicity

value: Other


title: 6177

description:
HumanMethylation450 BeadChip - standard protocol
6229068056_R05C01

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: current stress

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score


title: 6488

description:
HumanMethylation450 BeadChip - standard protocol
6164647074_R06C01

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: network life stress

tag: personal life stress

tag: posttraumatic stress disorder symptom scale total score


title: 6279

description:
HumanMethylation450 BeadChip - standard protocol
6164647074_R06C02

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: body mass index

tag: tissue

tag: race/ethnicity


title: 6478

description:
HumanMethylation450 BeadChip - standard protocol
6164647074_R05C01

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: current stress

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score


title: 6821

description:
HumanMethylation450 BeadChip - standard protocol
6229068089_R05C01

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: posttraumatic stress disorder symptom scale total score


title: 9654

description:
HumanMethylation450 BeadChip - standard protocol
6164647074_R05C02

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: body mass index

tag: tissue

tag: race/ethnicity


title: 7390

description:
HumanMethylation450 BeadChip - standard protocol
6229076102_R06C02

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: current stress

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score


title: 6014

description:
HumanMethylation450 BeadChip - standard protocol
6229076003_R01C02

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: network life stress

tag: personal life stress

tag: posttraumatic stress disorder symptom scale total score

value: African American


title: 6181

description:
HumanMethylation450 BeadChip - standard protocol
6164647067_R06C01

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: body mass index

tag: tissue

tag: race/ethnicity


title: 9708

description:
HumanMethylation450 BeadChip - standard protocol
6164647065_R06C02

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: current stress

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score


title: 6085

description:
HumanMethylation450 BeadChip - standard protocol
6164647065_R04C01

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: posttraumatic stress disorder symptom scale total score


title: 8798

status: Public on Sep 03 2015

description:
HumanMethylation450 BeadChip - standard protocol
6229076116_R05C01

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: tissue

tag: race/ethnicity


title: 9083

description:
HumanMethylation450 BeadChip - standard protocol
6229076116_R05C02

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: current stress

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: body mass index


title: 8996

description:
HumanMethylation450 BeadChip - standard protocol
6229076116_R03C02

tag: Sex

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: posttraumatic stress disorder symptom scale total score


title: 8435

description:
HumanMethylation450 BeadChip - standard protocol
6229076116_R03C01

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: current stress

tag: tissue

tag: race/ethnicity


title: 7323

description:
HumanMethylation450 BeadChip - standard protocol
6164647065_R05C01

tag: Sex

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: body mass index


title: 8710

description:
HumanMethylation450 BeadChip - standard protocol
6229076116_R02C02

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: network life stress

tag: personal life stress

tag: posttraumatic stress disorder symptom scale total score


title: 7915

description:
HumanMethylation450 BeadChip - standard protocol
6229076116_R01C02

tag: Sex

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: current stress

tag: tissue

tag: race/ethnicity


title: 8422

description:
HumanMethylation450 BeadChip - standard protocol
6229076116_R02C01

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: body mass index


title: 9167

description:
HumanMethylation450 BeadChip - standard protocol
6229076102_R05C01

tag: Sex

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: posttraumatic stress disorder symptom scale total score


title: 9116

description:
HumanMethylation450 BeadChip - standard protocol
6229076116_R06C02

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: current stress

tag: tissue

tag: race/ethnicity


title: 9622

description:
HumanMethylation450 BeadChip - standard protocol
6229076102_R06C01

tag: Sex

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: b cells

tag: monocytes

tag: granulocytes

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: body mass index


title: 9709

description:
HumanMethylation450 BeadChip - standard protocol
6229076102_R04C01

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for posttraumatic stress disorder

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: posttraumatic stress disorder symptom scale total score


title: 9637

description:
HumanMethylation450 BeadChip - standard protocol
6164647067_R06C02

tag: Sex

tag: treatment for bipolar disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: natural killer cells

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: current stress

tag: tissue

tag: race/ethnicity


title: 8192

description:
HumanMethylation450 BeadChip - standard protocol
6229076116_R01C01

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for posttraumatic stress disorder

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: b cells

tag: monocytes

tag: granulocytes

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score


title: 7228

description:
HumanMethylation450 BeadChip - standard protocol
6229076102_R03C01

tag: Sex

tag: treatment for bipolar disorder

tag: treatment for anxiety disorder

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: cumulative life stress

tag: network life stress

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index


title: PDGF+p53-/- tumor rep2

tag: genotype pdgfb gene

value: over expressed

tag: genotype trp53

value: KO

tag: genotype rbpj gene

value: wt

tag: tissue

value: brain tumor


title: 6064

description:
HumanMethylation450 BeadChip - standard protocol
6229068092_R06C02

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for posttraumatic stress disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: b cells

tag: monocytes

tag: granulocytes

tag: personal life stress

tag: current stress

tag: race/ethnicity


title: 9331

description:
HumanMethylation450 BeadChip - standard protocol
6229076102_R03C02

tag: Sex

value: Female

tag: treatment for anxiety disorder

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index

tag: tissue


title: 7017

description:
HumanMethylation450 BeadChip - standard protocol
6229076102_R02C01

tag: age

tag: childhood sexual/physical abuse moderate to extreme

value: Yes

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cumulative life stress

tag: network life stress


title: 6711

description:
HumanMethylation450 BeadChip - standard protocol
6229076102_R01C01

tag: Sex

value: No

tag: treatment for anxiety disorder

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: race/ethnicity


title: 8722

description:
HumanMethylation450 BeadChip - standard protocol
6229076102_R02C02

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: personal life stress

tag: current stress

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index

tag: tissue

value: whole Blood


title: 9646

description:
HumanMethylation450 BeadChip - standard protocol
6229076101_R05C02

tag: Sex

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes


title: 8440

description:
HumanMethylation450 BeadChip - standard protocol
6229076116_R04C01

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: race/ethnicity


title: 9688

description:
HumanMethylation450 BeadChip - standard protocol
6229076101_R05C01

tag: Sex

tag: dna methylation-predicted age

tag: cd8 t cells

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index

tag: tissue


title: 9157

description:
HumanMethylation450 BeadChip - standard protocol
6229076101_R04C02

tag: age

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: personal life stress

tag: current stress


title: 9524

description:
HumanMethylation450 BeadChip - standard protocol
6229076101_R04C01

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for posttraumatic stress disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: race/ethnicity


title: 9065

description:
HumanMethylation450 BeadChip - standard protocol
6229076101_R03C01

tag: age

tag: treatment for bipolar disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cumulative life stress

tag: network life stress

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index

tag: tissue


title: 8238

description:
HumanMethylation450 BeadChip - standard protocol
6229076101_R02C02

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for posttraumatic stress disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: personal life stress

tag: current stress


title: 8266

description:
HumanMethylation450 BeadChip - standard protocol
6229076101_R01C01

tag: age

tag: treatment for bipolar disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cumulative life stress

tag: network life stress

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: race/ethnicity


title: 8403

description:
HumanMethylation450 BeadChip - standard protocol
6229076101_R02C01

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index

tag: tissue


title: 6750

description:
HumanMethylation450 BeadChip - standard protocol
6229076090_R06C02

tag: age

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: granulocytes

tag: cumulative life stress

tag: personal life stress

tag: current stress


title: 8176

description:
HumanMethylation450 BeadChip - standard protocol
6229076101_R01C02

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: network life stress

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: race/ethnicity


title: 8467

description:
HumanMethylation450 BeadChip - standard protocol
6229076102_R01C02

tag: age

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index

tag: tissue


title: 6160

description:
HumanMethylation450 BeadChip - standard protocol
6229076090_R04C02

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: current stress


title: 6981

description:
HumanMethylation450 BeadChip - standard protocol
6229076090_R05C01

tag: age

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: race/ethnicity


title: 6941

description:
HumanMethylation450 BeadChip - standard protocol
6229076090_R04C01

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: posttraumatic stress disorder symptom scale total score

tag: tissue


title: 6110

description:
HumanMethylation450 BeadChip - standard protocol
6229076090_R03C02

tag: age

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: current stress

tag: body mass index


title: 6885

description:
HumanMethylation450 BeadChip - standard protocol
6229076090_R03C01

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: race/ethnicity


title: 6099

description:
HumanMethylation450 BeadChip - standard protocol
6229076090_R02C02

tag: age

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: network life stress

tag: posttraumatic stress disorder symptom scale total score

tag: tissue


title: 6809

description:
HumanMethylation450 BeadChip - standard protocol
6229076090_R02C01

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cumulative life stress

tag: personal life stress

tag: current stress

tag: body mass index


title: 6766

description:
HumanMethylation450 BeadChip - standard protocol
6229076090_R01C01

tag: age

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: race/ethnicity


title: 9204

description:
HumanMethylation450 BeadChip - standard protocol
6229076089_R06C02

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for anxiety disorder

tag: dna methylation-predicted age

tag: cumulative life stress

tag: network life stress

tag: posttraumatic stress disorder symptom scale total score

tag: tissue


title: 6033

description:
HumanMethylation450 BeadChip - standard protocol
6229076090_R01C02

tag: age

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: cd8 t cells

tag: personal life stress

tag: current stress

tag: body mass index


title: 8533

description:
HumanMethylation450 BeadChip - standard protocol
6229076089_R05C02

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: race/ethnicity


title: 9433

description:
HumanMethylation450 BeadChip - standard protocol
6229076089_R03C01

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: posttraumatic stress disorder symptom scale total score

tag: tissue


title: 7216

description:
HumanMethylation450 BeadChip - standard protocol
6229076089_R02C02

tag: age

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: network life stress

tag: body mass index


title: 7272

description:
HumanMethylation450 BeadChip - standard protocol
6229076089_R01C01

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: personal life stress

tag: current stress

tag: childhood trauma questionnaire total score

tag: race/ethnicity


title: 7316

description:
HumanMethylation450 BeadChip - standard protocol
6229076089_R02C01

tag: age

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: posttraumatic stress disorder symptom scale total score

tag: tissue


title: 7059

description:
HumanMethylation450 BeadChip - standard protocol
6229076090_R06C01

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for anxiety disorder

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: beck depression inventory total score


title: 6800

description:
HumanMethylation450 BeadChip - standard protocol
6229076089_R01C02

tag: age

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: personal life stress

tag: current stress

tag: childhood trauma questionnaire total score

tag: body mass index

tag: race/ethnicity


title: 6203

description:
HumanMethylation450 BeadChip - standard protocol
6229076090_R05C02

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for anxiety disorder

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: posttraumatic stress disorder symptom scale total score

tag: tissue


title: 6681

description:
HumanMethylation450 BeadChip - standard protocol
6229076088_R06C02

tag: age

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: network life stress


title: 6565

description:
HumanMethylation450 BeadChip - standard protocol
6229076088_R06C01

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: cumulative life stress

tag: personal life stress

tag: current stress

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: body mass index

tag: race/ethnicity


title: 6204

description:
HumanMethylation450 BeadChip - standard protocol
6229076088_R04C01

tag: age

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: posttraumatic stress disorder symptom scale total score

tag: tissue


title: 6208

description:
HumanMethylation450 BeadChip - standard protocol
6229076088_R05C01

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: cumulative life stress

tag: network life stress


title: 6144

description:
HumanMethylation450 BeadChip - standard protocol
6229076088_R03C01

tag: age

tag: dna methylation-predicted age

tag: personal life stress

tag: current stress

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: body mass index

tag: race/ethnicity


title: 6497

description:
HumanMethylation450 BeadChip - standard protocol
6229076088_R03C02

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: posttraumatic stress disorder symptom scale total score

tag: tissue


title: 6077

description:
HumanMethylation450 BeadChip - standard protocol
6229076088_R02C02

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: cumulative life stress

tag: network life stress


title: 6111

description:
HumanMethylation450 BeadChip - standard protocol
6229076088_R02C01

tag: age

tag: dna methylation-predicted age

tag: personal life stress

tag: current stress

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: body mass index

tag: race/ethnicity


title: 9487

description:
HumanMethylation450 BeadChip - standard protocol
6229076086_R06C02

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: posttraumatic stress disorder symptom scale total score

tag: tissue


title: 6070

description:
HumanMethylation450 BeadChip - standard protocol
6229076088_R01C01

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: cumulative life stress

tag: network life stress


title: 9666

description:
HumanMethylation450 BeadChip - standard protocol
6229076086_R06C01

tag: age

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: race/ethnicity


title: 9552

description:
HumanMethylation450 BeadChip - standard protocol
6229076086_R05C01

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index

tag: tissue


title: 9510

description:
HumanMethylation450 BeadChip - standard protocol
6229076086_R04C01

tag: age

tag: treatment for depression

tag: treatment for posttraumatic stress disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use


title: ChIP H2AKll9ub AML_4

description: chromatin IP (ChIP-seq)

value: AML

tag: antibody target

tag: company

value: Cell Signaling Technology

tag: catalogue number

tag: reference genome


title: 9599

description:
HumanMethylation450 BeadChip - standard protocol
6229076086_R02C02

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: race/ethnicity


title: 9318

description:
HumanMethylation450 BeadChip - standard protocol
6229076086_R02C01

tag: age

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: current stress

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index

tag: tissue


title: 9704

description:
HumanMethylation450 BeadChip - standard protocol
6229076086_R04C02

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: race/ethnicity


title: 7298

description:
HumanMethylation450 BeadChip - standard protocol
6229076085_R06C02

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: current stress


title: 6563

description:
HumanMethylation450 BeadChip - standard protocol
6229076088_R05C02

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index

tag: tissue


title: 7243

description:
HumanMethylation450 BeadChip - standard protocol
6229076085_R05C02

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: natural killer cells

tag: b cells

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: race/ethnicity


title: 9257

description:
HumanMethylation450 BeadChip - standard protocol
6229076086_R01C01

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: current stress


title: 6026

description:
HumanMethylation450 BeadChip - standard protocol
6229076085_R04C01

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: natural killer cells

tag: b cells

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index

tag: tissue


title: 6246

description:
HumanMethylation450 BeadChip - standard protocol
6229076085_R03C02

tag: Sex

value: Male

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: dna methylation-predicted age

tag: cd8 t cells

tag: childhood trauma questionnaire total score

tag: beck depression inventory total score

tag: race/ethnicity


title: 9700

description:
HumanMethylation450 BeadChip - standard protocol
6229076086_R03C02

tag: treatment for depression

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: cd4 t cells

tag: monocytes

tag: granulocytes


title: 7239

description:
HumanMethylation450 BeadChip - standard protocol
6229076086_R01C02

tag: Sex

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: natural killer cells

tag: b cells

tag: network life stress

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index

tag: tissue


title: 6685

description:
HumanMethylation450 BeadChip - standard protocol
6229076085_R04C02

tag: age

tag: treatment for depression

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: beck depression inventory total score

tag: race/ethnicity


title: 6562

description:
HumanMethylation450 BeadChip - standard protocol
6229076085_R05C01

tag: Sex

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for bipolar disorder

tag: cd4 t cells

tag: monocytes

tag: granulocytes

tag: childhood trauma questionnaire total score


title: 6751

description:
HumanMethylation450 BeadChip - standard protocol
6229076085_R06C01

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: natural killer cells

tag: b cells

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: current stress

tag: posttraumatic stress disorder symptom scale total score

tag: body mass index


title: 6025

description:
HumanMethylation450 BeadChip - standard protocol
6229076085_R02C01

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: tissue

tag: race/ethnicity


title: 6153

description:
HumanMethylation450 BeadChip - standard protocol
6229076085_R02C02

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: childhood trauma questionnaire total score


title: 8977

description:
HumanMethylation450 BeadChip - standard protocol
6229076067_R04C02

tag: Sex

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: current stress

tag: beck depression inventory total score

tag: posttraumatic stress disorder symptom scale total score


title: 8928

description:
HumanMethylation450 BeadChip - standard protocol
6229076067_R05C01

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: body mass index

tag: tissue

tag: race/ethnicity


title: 5988

description:
HumanMethylation450 BeadChip - standard protocol
6229076085_R01C01

tag: Sex

tag: b cells

tag: monocytes

tag: granulocytes

tag: network life stress

tag: childhood trauma questionnaire total score


title: 6145

description:
HumanMethylation450 BeadChip - standard protocol
6229076085_R01C02

tag: age

tag: treatment for depression


title: 8804

description:
HumanMethylation450 BeadChip - standard protocol
6229076067_R03C02

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: cumulative life stress

tag: personal life stress

tag: current stress

tag: beck depression inventory total score

tag: posttraumatic stress disorder symptom scale total score


title: 8343

description:
HumanMethylation450 BeadChip - standard protocol
6229076067_R04C01

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: body mass index

tag: tissue

tag: race/ethnicity


title: 8320

description:
HumanMethylation450 BeadChip - standard protocol
6229076067_R03C01

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: childhood trauma questionnaire total score


title: 8189

description:
HumanMethylation450 BeadChip - standard protocol
6229076067_R02C02

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: current stress

tag: beck depression inventory total score

tag: posttraumatic stress disorder symptom scale total score


title: 7897

description:
HumanMethylation450 BeadChip - standard protocol
6229076067_R01C02

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: treatment for posttraumatic stress disorder

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: body mass index

tag: tissue

tag: race/ethnicity


title: 8357

description:
HumanMethylation450 BeadChip - standard protocol
6229076061_R06C02

tag: treatment for anxiety disorder

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: network life stress

tag: personal life stress

tag: childhood trauma questionnaire total score


title: 8153

description:
HumanMethylation450 BeadChip - standard protocol
6229076067_R01C01

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: beck depression inventory total score

tag: posttraumatic stress disorder symptom scale total score


title: 8874

description:
HumanMethylation450 BeadChip - standard protocol
6229076061_R06C01

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: current stress

tag: body mass index

tag: tissue

tag: race/ethnicity


title: 8215

description:
HumanMethylation450 BeadChip - standard protocol
6229076061_R05C02

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: natural killer cells

tag: network life stress

tag: personal life stress

tag: childhood trauma questionnaire total score


title: 8229

description:
HumanMethylation450 BeadChip - standard protocol
6229076061_R03C01

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: current stress

tag: beck depression inventory total score

tag: posttraumatic stress disorder symptom scale total score


title: 8200

description:
HumanMethylation450 BeadChip - standard protocol
6229076061_R04C02

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: natural killer cells

tag: body mass index

tag: tissue

tag: race/ethnicity


title: 7840

description:
HumanMethylation450 BeadChip - standard protocol
6229076061_R02C02

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: network life stress

tag: personal life stress

tag: childhood trauma questionnaire total score


title: 8268

description:
HumanMethylation450 BeadChip - standard protocol
6229076061_R04C01

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: natural killer cells

tag: current stress

tag: beck depression inventory total score

tag: posttraumatic stress disorder symptom scale total score


title: 7746

description:
HumanMethylation450 BeadChip - standard protocol
6229076061_R01C02

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: body mass index

tag: tissue

tag: race/ethnicity


title: 7770

description:
HumanMethylation450 BeadChip - standard protocol
6229076061_R01C01

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: natural killer cells

tag: network life stress

tag: personal life stress

tag: childhood trauma questionnaire total score


title: 8237

description:
HumanMethylation450 BeadChip - standard protocol
6229076054_R06C02

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: cumulative life stress

tag: beck depression inventory total score

tag: posttraumatic stress disorder symptom scale total score


title: 7906

description:
HumanMethylation450 BeadChip - standard protocol
6229076054_R06C01

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: current stress

tag: body mass index

tag: tissue

tag: race/ethnicity


title: 7032

description:
HumanMethylation450 BeadChip - standard protocol
6229076054_R04C01

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: granulocytes

tag: network life stress

tag: personal life stress

tag: childhood trauma questionnaire total score


title: 7295

description:
HumanMethylation450 BeadChip - standard protocol
6229076054_R05C01

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: cumulative life stress

tag: current stress

tag: posttraumatic stress disorder symptom scale total score


title: 8162

description:
HumanMethylation450 BeadChip - standard protocol
6229076061_R02C01

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: kreek-mchugh-schluger-kellogg scale score for current marijuana use

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: beck depression inventory total score

tag: body mass index

tag: tissue

tag: race/ethnicity


title: 7904

description:
HumanMethylation450 BeadChip - standard protocol
6229076054_R05C02

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: kreek-mchugh-schluger-kellogg scale score for current alcohol use

tag: kreek-mchugh-schluger-kellogg scale score for current tobacco use

tag: kreek-mchugh-schluger-kellogg scale score for current cocaine use

tag: kreek-mchugh-schluger-kellogg scale score for current heroin use

tag: granulocytes

tag: network life stress

tag: personal life stress

tag: childhood trauma questionnaire total score


title: 6848

description:
HumanMethylation450 BeadChip - standard protocol
6229076054_R03C01

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: dna methylation-predicted age

tag: cd8 t cells

tag: cd4 t cells

tag: natural killer cells

tag: b cells

tag: monocytes

tag: cumulative life stress

tag: current stress

tag: beck depression inventory total score

tag: posttraumatic stress disorder symptom scale total score


title: 7602

description:
HumanMethylation450 BeadChip - standard protocol
6229076054_R04C02

tag: Sex

tag: age

tag: childhood sexual/physical abuse moderate to extreme

tag: treatment for depression

tag: treatment for bipolar disorder

tag: body mass index

tag: tissue

tag: race/ethnicity


title: 5896

description:
HumanMethylation450 BeadChip - standard protocol
6229076054_R01C02

tag: treatment for posttraumatic stress disorder

tag: treatment for anxiety disorder

tag: dna methylation-predicted age

tag: cd8 t cells

tag: granulocytes

tag: network life stress

tag: personal life stress

tag: childhood trauma questionnaire total score