title: N02_C06R29 Non-diabetic human islet single cell

description:
N02_C06R29
counts.csv


title: N02_C06R31 Non-diabetic human islet single cell

status: Public on Nov 11 2021

type: SRA

city: Tucson

first: Hongxu

last: Ding

state: AZ

address: The University of Arizona

country: USA

institute: University of Arizona

description:
N02_C06R31
counts.csv

library_source: transcriptomic

data_processing:
After demultiplexing, the resulting raw reads were aligned to hg19 reference genome by Bowtie2-2.2.6.
Aligned reads were sorted and indexed by samtools-1.2
Counts matrix was measured with R package GenomicFeatures (1.24.5),  GenomicAlignments (1.8.4) and TxDb.Hsapiens.UCSC.hg19.knownGene (3.2.2)
Samples annotated as living singlets were kept in the counts matrix
Genome_build: hg19, UCSC annotation from R package TxDb.Hsapiens.UCSC.hg19.knownGene (3.2.2)
Supplementary_files_format_and_content: comma separated file including counts matrix

molecule: polyA RNA

organism: Homo sapiens

source_name: Isolated single cells from normal human islets

extract_protocol:
Automated Fludigm C1 800 chip standard protocol
Nextera XT Library kit standard protocol

tag: tissue

value: inlet cells


title: N02_C06R22 Non-diabetic human islet single cell

description:
N02_C06R22
counts.csv


title: N02_C06R16 Non-diabetic human islet single cell

description:
N02_C06R16
counts.csv


title: N02_C06R26 Non-diabetic human islet single cell

description:
N02_C06R26
counts.csv


title: N02_C06R18 Non-diabetic human islet single cell

description:
N02_C06R18
counts.csv


title: N02_C06R24 Non-diabetic human islet single cell

description:
N02_C06R24
counts.csv


title: N02_C06R25 Non-diabetic human islet single cell

description:
N02_C06R25
counts.csv


title: N02_C06R17 Non-diabetic human islet single cell

description:
N02_C06R17
counts.csv


title: N02_C06R14 Non-diabetic human islet single cell

description:
N02_C06R14
counts.csv


title: N02_C06R12 Non-diabetic human islet single cell

description:
N02_C06R12
counts.csv


title: N02_C06R09 Non-diabetic human islet single cell

description:
N02_C06R09
counts.csv


title: N02_C06R07 Non-diabetic human islet single cell

description:
N02_C06R07
counts.csv


title: N02_C06R11 Non-diabetic human islet single cell

description:
N02_C06R11
counts.csv


title: N02_C06R10 Non-diabetic human islet single cell

description:
N02_C06R10
counts.csv


title: N02_C06R05 Non-diabetic human islet single cell

description:
N02_C06R05
counts.csv


title: N02_C06R06 Non-diabetic human islet single cell

description:
N02_C06R06
counts.csv


title: N02_C06R04 Non-diabetic human islet single cell

description:
N02_C06R04
counts.csv


title: N02_C06R19 Non-diabetic human islet single cell

description:
N02_C06R19
counts.csv


title: N02_C06R03 Non-diabetic human islet single cell

description:
N02_C06R03
counts.csv


title: N02_C06R13 Non-diabetic human islet single cell

description:
N02_C06R13
counts.csv


title: N02_C06R08 Non-diabetic human islet single cell

description:
N02_C06R08
counts.csv


title: N02_C06R02 Non-diabetic human islet single cell

description:
N02_C06R02
counts.csv


title: N02_C05R36 Non-diabetic human islet single cell

description:
N02_C05R36
counts.csv


title: N02_C05R29 Non-diabetic human islet single cell

description:
N02_C05R29
counts.csv


title: N02_C05R33 Non-diabetic human islet single cell

description:
N02_C05R33
counts.csv


title: N02_C05R22 Non-diabetic human islet single cell

description:
N02_C05R22
counts.csv


title: N02_C05R32 Non-diabetic human islet single cell

description:
N02_C05R32
counts.csv


title: N02_C05R38 Non-diabetic human islet single cell

description:
N02_C05R38
counts.csv


title: N02_C05R21 Non-diabetic human islet single cell

description:
N02_C05R21
counts.csv


title: N02_C05R20 Non-diabetic human islet single cell

description:
N02_C05R20
counts.csv


title: N02_C05R35 Non-diabetic human islet single cell

description:
N02_C05R35
counts.csv


title: N02_C05R26 Non-diabetic human islet single cell

description:
N02_C05R26
counts.csv


title: N02_C05R37 Non-diabetic human islet single cell

description:
N02_C05R37
counts.csv


title: N02_C05R34 Non-diabetic human islet single cell

description:
N02_C05R34
counts.csv


title: N02_C05R30 Non-diabetic human islet single cell

description:
N02_C05R30
counts.csv


title: N02_C06R01 Non-diabetic human islet single cell

description:
N02_C06R01
counts.csv


title: N02_C05R27 Non-diabetic human islet single cell

description:
N02_C05R27
counts.csv


title: N02_C05R39 Non-diabetic human islet single cell

description:
N02_C05R39
counts.csv


title: N02_C05R23 Non-diabetic human islet single cell

description:
N02_C05R23
counts.csv


title: N02_C05R16 Non-diabetic human islet single cell

description:
N02_C05R16
counts.csv


title: N02_C05R14 Non-diabetic human islet single cell

description:
N02_C05R14
counts.csv


title: N02_C05R40 Non-diabetic human islet single cell

description:
N02_C05R40
counts.csv


title: N02_C05R25 Non-diabetic human islet single cell

description:
N02_C05R25
counts.csv


title: N02_C05R31 Non-diabetic human islet single cell

description:
N02_C05R31
counts.csv


title: N02_C05R28 Non-diabetic human islet single cell

description:
N02_C05R28
counts.csv


title: N02_C05R13 Non-diabetic human islet single cell

description:
N02_C05R13
counts.csv


title: N02_C05R18 Non-diabetic human islet single cell

description:
N02_C05R18
counts.csv


title: N02_C05R19 Non-diabetic human islet single cell

description:
N02_C05R19
counts.csv


title: N02_C05R24 Non-diabetic human islet single cell

description:
N02_C05R24
counts.csv


title: N02_C05R12 Non-diabetic human islet single cell

description:
N02_C05R12
counts.csv


title: N02_C05R17 Non-diabetic human islet single cell

description:
N02_C05R17
counts.csv


title: N02_C05R10 Non-diabetic human islet single cell

description:
N02_C05R10
counts.csv


title: N02_C05R11 Non-diabetic human islet single cell

description:
N02_C05R11
counts.csv


title: N02_C05R02 Non-diabetic human islet single cell

description:
N02_C05R02
counts.csv


title: N02_C05R07 Non-diabetic human islet single cell

description:
N02_C05R07
counts.csv


title: N02_C05R03 Non-diabetic human islet single cell

description:
N02_C05R03
counts.csv


title: N02_C04R36 Non-diabetic human islet single cell

description:
N02_C04R36
counts.csv


title: N02_C05R05 Non-diabetic human islet single cell

description:
N02_C05R05
counts.csv


title: N02_C05R04 Non-diabetic human islet single cell

description:
N02_C05R04
counts.csv


title: N02_C04R39 Non-diabetic human islet single cell

description:
N02_C04R39
counts.csv


title: N02_C05R09 Non-diabetic human islet single cell

description:
N02_C05R09
counts.csv


title: N02_C04R35 Non-diabetic human islet single cell

description:
N02_C04R35
counts.csv


title: N02_C05R06 Non-diabetic human islet single cell

description:
N02_C05R06
counts.csv


title: N02_C05R08 Non-diabetic human islet single cell

description:
N02_C05R08
counts.csv


title: N02_C04R40 Non-diabetic human islet single cell

description:
N02_C04R40
counts.csv


title: N02_C04R38 Non-diabetic human islet single cell

description:
N02_C04R38
counts.csv


title: N02_C04R32 Non-diabetic human islet single cell

description:
N02_C04R32
counts.csv


title: N02_C04R31 Non-diabetic human islet single cell

description:
N02_C04R31
counts.csv


title: N02_C04R34 Non-diabetic human islet single cell

description:
N02_C04R34
counts.csv


title: N02_C04R30 Non-diabetic human islet single cell

description:
N02_C04R30
counts.csv


title: N02_C04R29 Non-diabetic human islet single cell

description:
N02_C04R29
counts.csv


title: N02_C04R33 Non-diabetic human islet single cell

description:
N02_C04R33
counts.csv


title: N02_C04R28 Non-diabetic human islet single cell

description:
N02_C04R28
counts.csv


title: N02_C04R27 Non-diabetic human islet single cell

description:
N02_C04R27
counts.csv


title: N02_C05R01 Non-diabetic human islet single cell

description:
N02_C05R01
counts.csv


title: N02_C04R26 Non-diabetic human islet single cell

description:
N02_C04R26
counts.csv


title: N02_C04R37 Non-diabetic human islet single cell

description:
N02_C04R37
counts.csv


title: N02_C04R24 Non-diabetic human islet single cell

description:
N02_C04R24
counts.csv


title: N02_C04R23 Non-diabetic human islet single cell

description:
N02_C04R23
counts.csv


title: N02_C04R17 Non-diabetic human islet single cell

description:
N02_C04R17
counts.csv


title: N02_C04R20 Non-diabetic human islet single cell

description:
N02_C04R20
counts.csv


title: N02_C04R16 Non-diabetic human islet single cell

description:
N02_C04R16
counts.csv


title: N02_C04R12 Non-diabetic human islet single cell

description:
N02_C04R12
counts.csv


title: N02_C04R13 Non-diabetic human islet single cell

description:
N02_C04R13
counts.csv


title: N02_C04R19 Non-diabetic human islet single cell

description:
N02_C04R19
counts.csv


title: N02_C04R14 Non-diabetic human islet single cell

description:
N02_C04R14
counts.csv


title: N02_C04R22 Non-diabetic human islet single cell

description:
N02_C04R22
counts.csv


title: N02_C04R11 Non-diabetic human islet single cell

description:
N02_C04R11
counts.csv


title: N02_C04R21 Non-diabetic human islet single cell

description:
N02_C04R21
counts.csv


title: N02_C04R09 Non-diabetic human islet single cell

description:
N02_C04R09
counts.csv


title: N02_C04R15 Non-diabetic human islet single cell

description:
N02_C04R15
counts.csv


title: N02_C04R10 Non-diabetic human islet single cell

description:
N02_C04R10
counts.csv


title: N02_C04R08 Non-diabetic human islet single cell

description:
N02_C04R08
counts.csv


title: N02_C04R07 Non-diabetic human islet single cell

description:
N02_C04R07
counts.csv


title: N02_C04R04 Non-diabetic human islet single cell

description:
N02_C04R04
counts.csv


title: N02_C04R05 Non-diabetic human islet single cell

description:
N02_C04R05
counts.csv


title: N02_C04R03 Non-diabetic human islet single cell

description:
N02_C04R03
counts.csv


title: N02_C04R01 Non-diabetic human islet single cell

description:
N02_C04R01
counts.csv


title: N02_C04R06 Non-diabetic human islet single cell

description:
N02_C04R06
counts.csv


title: N02_C04R02 Non-diabetic human islet single cell

description:
N02_C04R02
counts.csv


title: N02_C04R25 Non-diabetic human islet single cell

description:
N02_C04R25
counts.csv


title: N02_C03R37 Non-diabetic human islet single cell

description:
N02_C03R37
counts.csv


title: N02_C03R39 Non-diabetic human islet single cell

description:
N02_C03R39
counts.csv


title: N02_C03R38 Non-diabetic human islet single cell

description:
N02_C03R38
counts.csv


title: N02_C04R18 Non-diabetic human islet single cell

description:
N02_C04R18
counts.csv


title: N02_C03R40 Non-diabetic human islet single cell

description:
N02_C03R40
counts.csv


title: N02_C03R36 Non-diabetic human islet single cell

description:
N02_C03R36
counts.csv


title: N02_C03R35 Non-diabetic human islet single cell

description:
N02_C03R35
counts.csv


title: N02_C03R34 Non-diabetic human islet single cell

description:
N02_C03R34
counts.csv


title: N02_C03R31 Non-diabetic human islet single cell

description:
N02_C03R31
counts.csv


title: N02_C03R26 Non-diabetic human islet single cell

description:
N02_C03R26
counts.csv


title: N02_C03R29 Non-diabetic human islet single cell

description:
N02_C03R29
counts.csv


title: N02_C03R27 Non-diabetic human islet single cell

description:
N02_C03R27
counts.csv


title: N02_C03R32 Non-diabetic human islet single cell

description:
N02_C03R32
counts.csv


title: N02_C03R23 Non-diabetic human islet single cell

description:
N02_C03R23
counts.csv


title: N02_C03R25 Non-diabetic human islet single cell

description:
N02_C03R25
counts.csv


title: N02_C03R28 Non-diabetic human islet single cell

description:
N02_C03R28
counts.csv


title: N02_C03R21 Non-diabetic human islet single cell

description:
N02_C03R21
counts.csv


title: N02_C03R20 Non-diabetic human islet single cell

description:
N02_C03R20
counts.csv


title: N02_C03R19 Non-diabetic human islet single cell

description:
N02_C03R19
counts.csv


title: N02_C03R15 Non-diabetic human islet single cell

description:
N02_C03R15
counts.csv


title: N02_C03R14 Non-diabetic human islet single cell

description:
N02_C03R14
counts.csv


title: N02_C03R18 Non-diabetic human islet single cell

description:
N02_C03R18
counts.csv


title: N02_C03R16 Non-diabetic human islet single cell

description:
N02_C03R16
counts.csv


title: N02_C03R13 Non-diabetic human islet single cell

description:
N02_C03R13
counts.csv


title: N02_C03R12 Non-diabetic human islet single cell

description:
N02_C03R12
counts.csv


title: N02_C03R09 Non-diabetic human islet single cell

description:
N02_C03R09
counts.csv


title: N02_C03R08 Non-diabetic human islet single cell

description:
N02_C03R08
counts.csv


title: N02_C03R11 Non-diabetic human islet single cell

description:
N02_C03R11
counts.csv


title: N02_C03R10 Non-diabetic human islet single cell

description:
N02_C03R10
counts.csv


title: N02_C03R07 Non-diabetic human islet single cell

description:
N02_C03R07
counts.csv


title: N02_C03R06 Non-diabetic human islet single cell

description:
N02_C03R06
counts.csv


title: N02_C03R30 Non-diabetic human islet single cell

description:
N02_C03R30
counts.csv


title: N02_C03R24 Non-diabetic human islet single cell

description:
N02_C03R24
counts.csv


title: N02_C03R22 Non-diabetic human islet single cell

description:
N02_C03R22
counts.csv


title: N02_C02R39 Non-diabetic human islet single cell

description:
N02_C02R39
counts.csv


title: N02_C03R02 Non-diabetic human islet single cell

description:
N02_C03R02
counts.csv


title: N02_C03R04 Non-diabetic human islet single cell

description:
N02_C03R04
counts.csv


title: N02_C03R01 Non-diabetic human islet single cell

description:
N02_C03R01
counts.csv


title: N02_C02R40 Non-diabetic human islet single cell

description:
N02_C02R40
counts.csv


title: N02_C02R37 Non-diabetic human islet single cell

description:
N02_C02R37
counts.csv


title: N02_C03R17 Non-diabetic human islet single cell

description:
N02_C03R17
counts.csv


title: N02_C02R35 Non-diabetic human islet single cell

description:
N02_C02R35
counts.csv


title: N02_C02R33 Non-diabetic human islet single cell

description:
N02_C02R33
counts.csv


title: N02_C02R32 Non-diabetic human islet single cell

description:
N02_C02R32
counts.csv


title: N02_C02R30 Non-diabetic human islet single cell

description:
N02_C02R30
counts.csv


title: N02_C02R31 Non-diabetic human islet single cell

description:
N02_C02R31
counts.csv


title: N02_C03R33 Non-diabetic human islet single cell

description:
N02_C03R33
counts.csv


title: N02_C02R29 Non-diabetic human islet single cell

description:
N02_C02R29
counts.csv


title: N02_C02R34 Non-diabetic human islet single cell

description:
N02_C02R34
counts.csv


title: N02_C03R03 Non-diabetic human islet single cell

description:
N02_C03R03
counts.csv


title: N02_C02R27 Non-diabetic human islet single cell

description:
N02_C02R27
counts.csv


title: N02_C02R25 Non-diabetic human islet single cell

description:
N02_C02R25
counts.csv


title: N02_C02R38 Non-diabetic human islet single cell

description:
N02_C02R38
counts.csv


title: N02_C02R23 Non-diabetic human islet single cell

description:
N02_C02R23
counts.csv


title: N02_C02R26 Non-diabetic human islet single cell

description:
N02_C02R26
counts.csv


title: N02_C03R05 Non-diabetic human islet single cell

description:
N02_C03R05
counts.csv


title: N02_C02R28 Non-diabetic human islet single cell

description:
N02_C02R28
counts.csv


title: N02_C02R20 Non-diabetic human islet single cell

description:
N02_C02R20
counts.csv


title: N02_C02R18 Non-diabetic human islet single cell

description:
N02_C02R18
counts.csv


title: N02_C02R17 Non-diabetic human islet single cell

description:
N02_C02R17
counts.csv


title: N02_C02R21 Non-diabetic human islet single cell

description:
N02_C02R21
counts.csv


title: N02_C02R19 Non-diabetic human islet single cell

description:
N02_C02R19
counts.csv


title: N02_C02R22 Non-diabetic human islet single cell

description:
N02_C02R22
counts.csv


title: N02_C02R36 Non-diabetic human islet single cell

description:
N02_C02R36
counts.csv


title: N02_C02R13 Non-diabetic human islet single cell

description:
N02_C02R13
counts.csv


title: N02_C02R12 Non-diabetic human islet single cell

description:
N02_C02R12
counts.csv


title: N02_C02R16 Non-diabetic human islet single cell

description:
N02_C02R16
counts.csv


title: N02_C02R14 Non-diabetic human islet single cell

description:
N02_C02R14
counts.csv


title: N02_C02R11 Non-diabetic human islet single cell

description:
N02_C02R11
counts.csv


title: N02_C02R10 Non-diabetic human islet single cell

description:
N02_C02R10
counts.csv


title: N02_C02R07 Non-diabetic human islet single cell

description:
N02_C02R07
counts.csv


title: N02_C02R08 Non-diabetic human islet single cell

description:
N02_C02R08
counts.csv


title: N02_C02R05 Non-diabetic human islet single cell

description:
N02_C02R05
counts.csv


title: N02_C02R09 Non-diabetic human islet single cell

description:
N02_C02R09
counts.csv


title: N02_C02R06 Non-diabetic human islet single cell

description:
N02_C02R06
counts.csv


title: N02_C02R04 Non-diabetic human islet single cell

description:
N02_C02R04
counts.csv


title: N02_C02R03 Non-diabetic human islet single cell

description:
N02_C02R03
counts.csv


title: N02_C02R02 Non-diabetic human islet single cell

description:
N02_C02R02
counts.csv


title: N02_C02R01 Non-diabetic human islet single cell

description:
N02_C02R01
counts.csv


title: N02_C01R40 Non-diabetic human islet single cell

description:
N02_C01R40
counts.csv


title: N02_C01R37 Non-diabetic human islet single cell

description:
N02_C01R37
counts.csv


title: N02_C01R35 Non-diabetic human islet single cell

description:
N02_C01R35
counts.csv


title: N02_C02R15 Non-diabetic human islet single cell

description:
N02_C02R15
counts.csv


title: N02_C01R36 Non-diabetic human islet single cell

description:
N02_C01R36
counts.csv


title: N02_C01R38 Non-diabetic human islet single cell

description:
N02_C01R38
counts.csv


title: N02_C01R34 Non-diabetic human islet single cell

description:
N02_C01R34
counts.csv


title: N02_C01R32 Non-diabetic human islet single cell

description:
N02_C01R32
counts.csv


title: N02_C01R33 Non-diabetic human islet single cell

description:
N02_C01R33
counts.csv


title: N02_C01R31 Non-diabetic human islet single cell

description:
N02_C01R31
counts.csv


title: N02_C01R24 Non-diabetic human islet single cell

description:
N02_C01R24
counts.csv


title: N02_C01R29 Non-diabetic human islet single cell

description:
N02_C01R29
counts.csv


title: N02_C01R26 Non-diabetic human islet single cell

description:
N02_C01R26
counts.csv


title: N02_C01R27 Non-diabetic human islet single cell

description:
N02_C01R27
counts.csv


title: N02_C01R25 Non-diabetic human islet single cell

description:
N02_C01R25
counts.csv


title: N02_C01R30 Non-diabetic human islet single cell

description:
N02_C01R30
counts.csv


title: N02_C01R28 Non-diabetic human islet single cell

description:
N02_C01R28
counts.csv


title: N02_C01R22 Non-diabetic human islet single cell

description:
N02_C01R22
counts.csv


title: N02_C01R21 Non-diabetic human islet single cell

description:
N02_C01R21
counts.csv


title: N02_C01R23 Non-diabetic human islet single cell

description:
N02_C01R23
counts.csv


title: N02_C01R20 Non-diabetic human islet single cell

description:
N02_C01R20
counts.csv


title: N02_C01R19 Non-diabetic human islet single cell

description:
N02_C01R19
counts.csv


title: N02_C01R18 Non-diabetic human islet single cell

description:
N02_C01R18
counts.csv


title: N02_C01R17 Non-diabetic human islet single cell

description:
N02_C01R17
counts.csv


title: N02_C01R39 Non-diabetic human islet single cell

description:
N02_C01R39
counts.csv


title: N02_C01R15 Non-diabetic human islet single cell

description:
N02_C01R15
counts.csv


title: N02_C01R16 Non-diabetic human islet single cell

description:
N02_C01R16
counts.csv


title: N02_C01R14 Non-diabetic human islet single cell

description:
N02_C01R14
counts.csv


title: N02_C05R15 Non-diabetic human islet single cell

description:
N02_C05R15
counts.csv


title: N02_C01R12 Non-diabetic human islet single cell

description:
N02_C01R12
counts.csv


title: N02_C01R10 Non-diabetic human islet single cell

description:
N02_C01R10
counts.csv


title: N02_C01R11 Non-diabetic human islet single cell

description:
N02_C01R11
counts.csv


title: N02_C01R08 Non-diabetic human islet single cell

description:
N02_C01R08
counts.csv


title: N02_C01R09 Non-diabetic human islet single cell

description:
N02_C01R09
counts.csv


title: N02_C01R06 Non-diabetic human islet single cell

description:
N02_C01R06
counts.csv


title: N02_C01R04 Non-diabetic human islet single cell

description:
N02_C01R04
counts.csv


title: N02_C01R02 Non-diabetic human islet single cell

description:
N02_C01R02
counts.csv


title: N02_C01R03 Non-diabetic human islet single cell

description:
N02_C01R03
counts.csv


title: N01_C20R34 Non-diabetic human islet single cell

description:
N01_C20R34
counts.csv


title: N01_C20R33 Non-diabetic human islet single cell

description:
N01_C20R33
counts.csv


title: N01_C20R40 Non-diabetic human islet single cell

description:
N01_C20R40
counts.csv


title: N01_C20R30 Non-diabetic human islet single cell

description:
N01_C20R30
counts.csv


title: N02_C01R13 Non-diabetic human islet single cell

description:
N02_C01R13
counts.csv


title: N01_C20R31 Non-diabetic human islet single cell

description:
N01_C20R31
counts.csv


title: N01_C20R39 Non-diabetic human islet single cell

description:
N01_C20R39
counts.csv


title: N01_C20R37 Non-diabetic human islet single cell

description:
N01_C20R37
counts.csv


title: N01_C20R35 Non-diabetic human islet single cell

description:
N01_C20R35
counts.csv


title: N01_C20R32 Non-diabetic human islet single cell

description:
N01_C20R32
counts.csv


title: N01_C20R29 Non-diabetic human islet single cell

description:
N01_C20R29
counts.csv


title: N01_C20R28 Non-diabetic human islet single cell

description:
N01_C20R28
counts.csv


title: N01_C20R36 Non-diabetic human islet single cell

description:
N01_C20R36
counts.csv


title: N01_C20R27 Non-diabetic human islet single cell

description:
N01_C20R27
counts.csv


title: N01_C20R26 Non-diabetic human islet single cell

description:
N01_C20R26
counts.csv


title: N01_C20R25 Non-diabetic human islet single cell

description:
N01_C20R25
counts.csv


title: N01_C20R24 Non-diabetic human islet single cell

description:
N01_C20R24
counts.csv


title: N01_C20R23 Non-diabetic human islet single cell

description:
N01_C20R23
counts.csv


title: N02_C01R07 Non-diabetic human islet single cell

description:
N02_C01R07
counts.csv


title: N01_C20R22 Non-diabetic human islet single cell

description:
N01_C20R22
counts.csv


title: N01_C20R20 Non-diabetic human islet single cell

description:
N01_C20R20
counts.csv


title: N02_C01R05 Non-diabetic human islet single cell

description:
N02_C01R05
counts.csv


title: N01_C20R21 Non-diabetic human islet single cell

description:
N01_C20R21
counts.csv


title: N01_C20R19 Non-diabetic human islet single cell

description:
N01_C20R19
counts.csv


title: N01_C20R18 Non-diabetic human islet single cell

description:
N01_C20R18
counts.csv


title: N01_C20R38 Non-diabetic human islet single cell

description:
N01_C20R38
counts.csv


title: N02_C01R01 Non-diabetic human islet single cell

description:
N02_C01R01
counts.csv


title: N01_C20R16 Non-diabetic human islet single cell

description:
N01_C20R16
counts.csv


title: N01_C20R17 Non-diabetic human islet single cell

description:
N01_C20R17
counts.csv


title: N01_C20R12 Non-diabetic human islet single cell

description:
N01_C20R12
counts.csv


title: N01_C20R13 Non-diabetic human islet single cell

description:
N01_C20R13
counts.csv


title: N01_C20R15 Non-diabetic human islet single cell

description:
N01_C20R15
counts.csv


title: N01_C20R10 Non-diabetic human islet single cell

description:
N01_C20R10
counts.csv


title: N01_C20R14 Non-diabetic human islet single cell

description:
N01_C20R14
counts.csv


title: N01_C20R06 Non-diabetic human islet single cell

description:
N01_C20R06
counts.csv


title: N01_C20R04 Non-diabetic human islet single cell

description:
N01_C20R04
counts.csv


title: N01_C20R07 Non-diabetic human islet single cell

description:
N01_C20R07
counts.csv


title: N01_C20R11 Non-diabetic human islet single cell

description:
N01_C20R11
counts.csv


title: N01_C20R02 Non-diabetic human islet single cell

description:
N01_C20R02
counts.csv


title: N01_C20R03 Non-diabetic human islet single cell

description:
N01_C20R03
counts.csv


title: N01_C19R37 Non-diabetic human islet single cell

description:
N01_C19R37
counts.csv


title: N01_C19R38 Non-diabetic human islet single cell

description:
N01_C19R38
counts.csv


title: N01_C19R40 Non-diabetic human islet single cell

description:
N01_C19R40
counts.csv


title: N01_C19R39 Non-diabetic human islet single cell

description:
N01_C19R39
counts.csv


title: N01_C19R36 Non-diabetic human islet single cell

description:
N01_C19R36
counts.csv


title: N01_C20R01 Non-diabetic human islet single cell

description:
N01_C20R01
counts.csv


title: N01_C19R34 Non-diabetic human islet single cell

description:
N01_C19R34
counts.csv


title: N01_C19R35 Non-diabetic human islet single cell

description:
N01_C19R35
counts.csv


title: N01_C20R05 Non-diabetic human islet single cell

description:
N01_C20R05
counts.csv


title: N01_C19R33 Non-diabetic human islet single cell

description:
N01_C19R33
counts.csv


title: N01_C19R32 Non-diabetic human islet single cell

description:
N01_C19R32
counts.csv


title: N01_C20R09 Non-diabetic human islet single cell

description:
N01_C20R09
counts.csv


title: N01_C19R31 Non-diabetic human islet single cell

description:
N01_C19R31
counts.csv


title: N01_C19R30 Non-diabetic human islet single cell

description:
N01_C19R30
counts.csv


title: N01_C20R08 Non-diabetic human islet single cell

description:
N01_C20R08
counts.csv


title: N01_C19R29 Non-diabetic human islet single cell

description:
N01_C19R29
counts.csv


title: N01_C19R25 Non-diabetic human islet single cell

description:
N01_C19R25
counts.csv


title: N01_C19R24 Non-diabetic human islet single cell

description:
N01_C19R24
counts.csv


title: N01_C19R22 Non-diabetic human islet single cell

description:
N01_C19R22
counts.csv


title: N01_C19R26 Non-diabetic human islet single cell

description:
N01_C19R26
counts.csv


title: N01_C19R21 Non-diabetic human islet single cell

description:
N01_C19R21
counts.csv


title: N01_C19R23 Non-diabetic human islet single cell

description:
N01_C19R23
counts.csv


title: N01_C19R28 Non-diabetic human islet single cell

description:
N01_C19R28
counts.csv


title: N01_C19R19 Non-diabetic human islet single cell

description:
N01_C19R19
counts.csv


title: N01_C19R18 Non-diabetic human islet single cell

description:
N01_C19R18
counts.csv


title: N01_C19R16 Non-diabetic human islet single cell

description:
N01_C19R16
counts.csv


title: N01_C19R27 Non-diabetic human islet single cell

description:
N01_C19R27
counts.csv


title: N01_C19R20 Non-diabetic human islet single cell

description:
N01_C19R20
counts.csv


title: N01_C19R14 Non-diabetic human islet single cell

description:
N01_C19R14
counts.csv


title: N01_C19R13 Non-diabetic human islet single cell

description:
N01_C19R13
counts.csv


title: N01_C19R15 Non-diabetic human islet single cell

description:
N01_C19R15
counts.csv


title: N01_C19R10 Non-diabetic human islet single cell

description:
N01_C19R10
counts.csv


title: N01_C19R12 Non-diabetic human islet single cell

description:
N01_C19R12
counts.csv


title: N01_C19R09 Non-diabetic human islet single cell

description:
N01_C19R09
counts.csv


title: N01_C19R07 Non-diabetic human islet single cell

description:
N01_C19R07
counts.csv


title: N01_C19R08 Non-diabetic human islet single cell

description:
N01_C19R08
counts.csv


title: N01_C19R06 Non-diabetic human islet single cell

description:
N01_C19R06
counts.csv


title: N01_C19R11 Non-diabetic human islet single cell

description:
N01_C19R11
counts.csv


title: N01_C19R05 Non-diabetic human islet single cell

description:
N01_C19R05
counts.csv


title: N01_C18R39 Non-diabetic human islet single cell

description:
N01_C18R39
counts.csv


title: N01_C19R01 Non-diabetic human islet single cell

description:
N01_C19R01
counts.csv


title: N01_C19R04 Non-diabetic human islet single cell

description:
N01_C19R04
counts.csv


title: N01_C18R40 Non-diabetic human islet single cell

description:
N01_C18R40
counts.csv


title: N01_C19R02 Non-diabetic human islet single cell

description:
N01_C19R02
counts.csv


title: N01_C19R03 Non-diabetic human islet single cell

description:
N01_C19R03
counts.csv


title: N01_C18R38 Non-diabetic human islet single cell

description:
N01_C18R38
counts.csv


title: N01_C19R17 Non-diabetic human islet single cell

description:
N01_C19R17
counts.csv


title: N01_C18R36 Non-diabetic human islet single cell

description:
N01_C18R36
counts.csv


title: N01_C18R34 Non-diabetic human islet single cell

description:
N01_C18R34
counts.csv


title: N01_C18R37 Non-diabetic human islet single cell

description:
N01_C18R37
counts.csv


title: N01_C18R33 Non-diabetic human islet single cell

description:
N01_C18R33
counts.csv


title: N01_C18R31 Non-diabetic human islet single cell

description:
N01_C18R31
counts.csv


title: N01_C18R27 Non-diabetic human islet single cell

description:
N01_C18R27
counts.csv


title: N01_C18R22 Non-diabetic human islet single cell

description:
N01_C18R22
counts.csv


title: N01_C18R25 Non-diabetic human islet single cell

description:
N01_C18R25
counts.csv


title: N01_C18R23 Non-diabetic human islet single cell

description:
N01_C18R23
counts.csv


title: N01_C18R24 Non-diabetic human islet single cell

description:
N01_C18R24
counts.csv


title: N01_C18R26 Non-diabetic human islet single cell

description:
N01_C18R26
counts.csv


title: N01_C18R28 Non-diabetic human islet single cell

description:
N01_C18R28
counts.csv


title: N01_C18R29 Non-diabetic human islet single cell

description:
N01_C18R29
counts.csv


title: N02_C02R24 Non-diabetic human islet single cell

description:
N02_C02R24
counts.csv


title: N01_C18R20 Non-diabetic human islet single cell

description:
N01_C18R20
counts.csv


title: N01_C18R19 Non-diabetic human islet single cell

description:
N01_C18R19
counts.csv


title: N01_C18R21 Non-diabetic human islet single cell

description:
N01_C18R21
counts.csv


title: N01_C18R18 Non-diabetic human islet single cell

description:
N01_C18R18
counts.csv


title: N01_C18R17 Non-diabetic human islet single cell

description:
N01_C18R17
counts.csv


title: N01_C18R35 Non-diabetic human islet single cell

description:
N01_C18R35
counts.csv


title: N01_C18R15 Non-diabetic human islet single cell

description:
N01_C18R15
counts.csv


title: N01_C18R13 Non-diabetic human islet single cell

description:
N01_C18R13
counts.csv


title: N01_C18R12 Non-diabetic human islet single cell

description:
N01_C18R12
counts.csv


title: N01_C18R16 Non-diabetic human islet single cell

description:
N01_C18R16
counts.csv


title: N01_C18R11 Non-diabetic human islet single cell

description:
N01_C18R11
counts.csv


title: N01_C18R09 Non-diabetic human islet single cell

description:
N01_C18R09
counts.csv


title: N01_C18R14 Non-diabetic human islet single cell

description:
N01_C18R14
counts.csv


title: N01_C18R07 Non-diabetic human islet single cell

description:
N01_C18R07
counts.csv


title: N01_C18R04 Non-diabetic human islet single cell

description:
N01_C18R04
counts.csv


title: N01_C18R32 Non-diabetic human islet single cell

description:
N01_C18R32
counts.csv


title: N01_C18R30 Non-diabetic human islet single cell

description:
N01_C18R30
counts.csv


title: N01_C18R06 Non-diabetic human islet single cell

description:
N01_C18R06
counts.csv


title: N01_C18R03 Non-diabetic human islet single cell

description:
N01_C18R03
counts.csv


title: N01_C17R40 Non-diabetic human islet single cell

description:
N01_C17R40
counts.csv


title: N01_C18R01 Non-diabetic human islet single cell

description:
N01_C18R01
counts.csv


title: N01_C17R36 Non-diabetic human islet single cell

description:
N01_C17R36
counts.csv


title: N01_C17R38 Non-diabetic human islet single cell

description:
N01_C17R38
counts.csv


title: N01_C17R37 Non-diabetic human islet single cell

description:
N01_C17R37
counts.csv


title: N01_C18R02 Non-diabetic human islet single cell

description:
N01_C18R02
counts.csv


title: N01_C17R35 Non-diabetic human islet single cell

description:
N01_C17R35
counts.csv


title: N01_C17R32 Non-diabetic human islet single cell

description:
N01_C17R32
counts.csv


title: N01_C17R31 Non-diabetic human islet single cell

description:
N01_C17R31
counts.csv


title: N01_C17R30 Non-diabetic human islet single cell

description:
N01_C17R30
counts.csv


title: N01_C17R39 Non-diabetic human islet single cell

description:
N01_C17R39
counts.csv


title: N01_C17R34 Non-diabetic human islet single cell

description:
N01_C17R34
counts.csv


title: N01_C18R10 Non-diabetic human islet single cell

description:
N01_C18R10
counts.csv


title: N01_C17R29 Non-diabetic human islet single cell

description:
N01_C17R29
counts.csv


title: N01_C17R28 Non-diabetic human islet single cell

description:
N01_C17R28
counts.csv


title: N01_C18R08 Non-diabetic human islet single cell

description:
N01_C18R08
counts.csv


title: N01_C18R05 Non-diabetic human islet single cell

description:
N01_C18R05
counts.csv


title: N01_C17R20 Non-diabetic human islet single cell

description:
N01_C17R20
counts.csv


title: N01_C17R27 Non-diabetic human islet single cell

description:
N01_C17R27
counts.csv


title: N01_C17R26 Non-diabetic human islet single cell

description:
N01_C17R26
counts.csv


title: N01_C17R22 Non-diabetic human islet single cell

description:
N01_C17R22
counts.csv


title: N01_C17R21 Non-diabetic human islet single cell

description:
N01_C17R21
counts.csv


title: N01_C17R24 Non-diabetic human islet single cell

description:
N01_C17R24
counts.csv


title: N01_C17R18 Non-diabetic human islet single cell

description:
N01_C17R18
counts.csv


title: N01_C17R23 Non-diabetic human islet single cell

description:
N01_C17R23
counts.csv


title: N01_C17R19 Non-diabetic human islet single cell

description:
N01_C17R19
counts.csv


title: N01_C17R25 Non-diabetic human islet single cell

description:
N01_C17R25
counts.csv


title: N01_C17R17 Non-diabetic human islet single cell

description:
N01_C17R17
counts.csv


title: N01_C17R33 Non-diabetic human islet single cell

description:
N01_C17R33
counts.csv


title: N01_C17R16 Non-diabetic human islet single cell

description:
N01_C17R16
counts.csv


title: N01_C17R14 Non-diabetic human islet single cell

description:
N01_C17R14
counts.csv


title: N01_C17R15 Non-diabetic human islet single cell

description:
N01_C17R15
counts.csv


title: N01_C17R11 Non-diabetic human islet single cell

description:
N01_C17R11
counts.csv


title: N01_C17R09 Non-diabetic human islet single cell

description:
N01_C17R09
counts.csv


title: N01_C17R12 Non-diabetic human islet single cell

description:
N01_C17R12
counts.csv


title: N01_C17R13 Non-diabetic human islet single cell

description:
N01_C17R13
counts.csv


title: N01_C17R08 Non-diabetic human islet single cell

description:
N01_C17R08
counts.csv


title: N01_C17R10 Non-diabetic human islet single cell

description:
N01_C17R10
counts.csv


title: N01_C17R07 Non-diabetic human islet single cell

description:
N01_C17R07
counts.csv


title: N01_C17R06 Non-diabetic human islet single cell

description:
N01_C17R06
counts.csv


title: N01_C17R03 Non-diabetic human islet single cell

description:
N01_C17R03
counts.csv


title: N01_C17R01 Non-diabetic human islet single cell

description:
N01_C17R01
counts.csv


title: N01_C17R02 Non-diabetic human islet single cell

description:
N01_C17R02
counts.csv


title: N01_C16R40 Non-diabetic human islet single cell

description:
N01_C16R40
counts.csv


title: N01_C16R39 Non-diabetic human islet single cell

description:
N01_C16R39
counts.csv


title: N01_C16R33 Non-diabetic human islet single cell

description:
N01_C16R33
counts.csv


title: N01_C16R34 Non-diabetic human islet single cell

description:
N01_C16R34
counts.csv


title: N01_C16R31 Non-diabetic human islet single cell

description:
N01_C16R31
counts.csv


title: N01_C16R32 Non-diabetic human islet single cell

description:
N01_C16R32
counts.csv


title: N01_C16R36 Non-diabetic human islet single cell

description:
N01_C16R36
counts.csv


title: N01_C16R37 Non-diabetic human islet single cell

description:
N01_C16R37
counts.csv


title: N01_C16R29 Non-diabetic human islet single cell

description:
N01_C16R29
counts.csv


title: N01_C16R35 Non-diabetic human islet single cell

description:
N01_C16R35
counts.csv


title: N01_C16R27 Non-diabetic human islet single cell

description:
N01_C16R27
counts.csv


title: N01_C16R26 Non-diabetic human islet single cell

description:
N01_C16R26
counts.csv


title: N01_C16R30 Non-diabetic human islet single cell

description:
N01_C16R30
counts.csv


title: N01_C16R38 Non-diabetic human islet single cell

description:
N01_C16R38
counts.csv


title: N01_C17R05 Non-diabetic human islet single cell

description:
N01_C17R05
counts.csv


title: N01_C16R25 Non-diabetic human islet single cell

description:
N01_C16R25
counts.csv


title: N01_C16R22 Non-diabetic human islet single cell

description:
N01_C16R22
counts.csv


title: N01_C16R21 Non-diabetic human islet single cell

description:
N01_C16R21
counts.csv


title: N01_C17R04 Non-diabetic human islet single cell

description:
N01_C17R04
counts.csv


title: N01_C16R19 Non-diabetic human islet single cell

description:
N01_C16R19
counts.csv


title: N01_C16R20 Non-diabetic human islet single cell

description:
N01_C16R20
counts.csv


title: N01_C16R16 Non-diabetic human islet single cell

description:
N01_C16R16
counts.csv


title: N01_C16R18 Non-diabetic human islet single cell

description:
N01_C16R18
counts.csv


title: N01_C16R24 Non-diabetic human islet single cell

description:
N01_C16R24
counts.csv


title: N01_C16R15 Non-diabetic human islet single cell

description:
N01_C16R15
counts.csv


title: N01_C16R14 Non-diabetic human islet single cell

description:
N01_C16R14
counts.csv


title: N01_C16R12 Non-diabetic human islet single cell

description:
N01_C16R12
counts.csv


title: N01_C16R17 Non-diabetic human islet single cell

description:
N01_C16R17
counts.csv


title: N01_C16R13 Non-diabetic human islet single cell

description:
N01_C16R13
counts.csv


title: N01_C16R09 Non-diabetic human islet single cell

description:
N01_C16R09
counts.csv


title: N01_C16R10 Non-diabetic human islet single cell

description:
N01_C16R10
counts.csv


title: N01_C16R07 Non-diabetic human islet single cell

description:
N01_C16R07
counts.csv


title: N01_C16R05 Non-diabetic human islet single cell

description:
N01_C16R05
counts.csv


title: N01_C16R23 Non-diabetic human islet single cell

description:
N01_C16R23
counts.csv


title: N01_C16R28 Non-diabetic human islet single cell

description:
N01_C16R28
counts.csv


title: N01_C16R08 Non-diabetic human islet single cell

description:
N01_C16R08
counts.csv


title: N01_C16R06 Non-diabetic human islet single cell

description:
N01_C16R06
counts.csv


title: N01_C16R02 Non-diabetic human islet single cell

description:
N01_C16R02
counts.csv


title: N01_C16R11 Non-diabetic human islet single cell

description:
N01_C16R11
counts.csv


title: N01_C16R01 Non-diabetic human islet single cell

description:
N01_C16R01
counts.csv


title: N01_C15R39 Non-diabetic human islet single cell

description:
N01_C15R39
counts.csv


title: N01_C15R40 Non-diabetic human islet single cell

description:
N01_C15R40
counts.csv


title: N01_C16R04 Non-diabetic human islet single cell

description:
N01_C16R04
counts.csv


title: N01_C16R03 Non-diabetic human islet single cell

description:
N01_C16R03
counts.csv


title: N01_C15R37 Non-diabetic human islet single cell

description:
N01_C15R37
counts.csv


title: N01_C15R35 Non-diabetic human islet single cell

description:
N01_C15R35
counts.csv


title: N01_C15R33 Non-diabetic human islet single cell

description:
N01_C15R33
counts.csv


title: N01_C15R38 Non-diabetic human islet single cell

description:
N01_C15R38
counts.csv


title: N01_C15R34 Non-diabetic human islet single cell

description:
N01_C15R34
counts.csv


title: N01_C15R32 Non-diabetic human islet single cell

description:
N01_C15R32
counts.csv


title: N01_C15R29 Non-diabetic human islet single cell

description:
N01_C15R29
counts.csv


title: N01_C15R28 Non-diabetic human islet single cell

description:
N01_C15R28
counts.csv


title: N01_C15R36 Non-diabetic human islet single cell

description:
N01_C15R36
counts.csv


title: N01_C15R30 Non-diabetic human islet single cell

description:
N01_C15R30
counts.csv


title: N01_C15R27 Non-diabetic human islet single cell

description:
N01_C15R27
counts.csv


title: N01_C15R26 Non-diabetic human islet single cell

description:
N01_C15R26
counts.csv


title: N01_C15R24 Non-diabetic human islet single cell

description:
N01_C15R24
counts.csv


title: N01_C15R21 Non-diabetic human islet single cell

description:
N01_C15R21
counts.csv


title: N01_C15R19 Non-diabetic human islet single cell

description:
N01_C15R19
counts.csv


title: N01_C15R20 Non-diabetic human islet single cell

description:
N01_C15R20
counts.csv


title: N01_C15R18 Non-diabetic human islet single cell

description:
N01_C15R18
counts.csv


title: N01_C15R17 Non-diabetic human islet single cell

description:
N01_C15R17
counts.csv


title: N01_C15R14 Non-diabetic human islet single cell

description:
N01_C15R14
counts.csv


title: N01_C15R13 Non-diabetic human islet single cell

description:
N01_C15R13
counts.csv


title: N01_C15R12 Non-diabetic human islet single cell

description:
N01_C15R12
counts.csv


title: N01_C15R16 Non-diabetic human islet single cell

description:
N01_C15R16
counts.csv


title: N01_C15R06 Non-diabetic human islet single cell

description:
N01_C15R06
counts.csv


title: N01_C15R11 Non-diabetic human islet single cell

description:
N01_C15R11
counts.csv


title: N01_C15R08 Non-diabetic human islet single cell

description:
N01_C15R08
counts.csv


title: N01_C15R15 Non-diabetic human islet single cell

description:
N01_C15R15
counts.csv


title: N01_C15R31 Non-diabetic human islet single cell

description:
N01_C15R31
counts.csv


title: N01_C15R05 Non-diabetic human islet single cell

description:
N01_C15R05
counts.csv


title: N01_C15R04 Non-diabetic human islet single cell

description:
N01_C15R04
counts.csv


title: N01_C15R03 Non-diabetic human islet single cell

description:
N01_C15R03
counts.csv


title: N01_C15R09 Non-diabetic human islet single cell

description:
N01_C15R09
counts.csv


title: N01_C15R01 Non-diabetic human islet single cell

description:
N01_C15R01
counts.csv


title: N01_C14R40 Non-diabetic human islet single cell

description:
N01_C14R40
counts.csv


title: N01_C14R39 Non-diabetic human islet single cell

description:
N01_C14R39
counts.csv


title: N01_C15R25 Non-diabetic human islet single cell

description:
N01_C15R25
counts.csv


title: N01_C14R38 Non-diabetic human islet single cell

description:
N01_C14R38
counts.csv


title: N01_C14R37 Non-diabetic human islet single cell

description:
N01_C14R37
counts.csv


title: N01_C15R23 Non-diabetic human islet single cell

description:
N01_C15R23
counts.csv


title: N01_C15R22 Non-diabetic human islet single cell

description:
N01_C15R22
counts.csv


title: N01_C14R36 Non-diabetic human islet single cell

description:
N01_C14R36
counts.csv


title: N01_C15R10 Non-diabetic human islet single cell

description:
N01_C15R10
counts.csv


title: N01_C14R31 Non-diabetic human islet single cell

description:
N01_C14R31
counts.csv


title: N01_C14R35 Non-diabetic human islet single cell

description:
N01_C14R35
counts.csv


title: N01_C14R34 Non-diabetic human islet single cell

description:
N01_C14R34
counts.csv


title: N01_C14R32 Non-diabetic human islet single cell

description:
N01_C14R32
counts.csv


title: N01_C15R07 Non-diabetic human islet single cell

description:
N01_C15R07
counts.csv


title: N01_C14R30 Non-diabetic human islet single cell

description:
N01_C14R30
counts.csv


title: N01_C14R28 Non-diabetic human islet single cell

description:
N01_C14R28
counts.csv


title: N01_C14R33 Non-diabetic human islet single cell

description:
N01_C14R33
counts.csv


title: N01_C14R27 Non-diabetic human islet single cell

description:
N01_C14R27
counts.csv


title: N01_C15R02 Non-diabetic human islet single cell

description:
N01_C15R02
counts.csv


title: N01_C14R21 Non-diabetic human islet single cell

description:
N01_C14R21
counts.csv


title: N01_C14R18 Non-diabetic human islet single cell

description:
N01_C14R18
counts.csv


title: N01_C14R22 Non-diabetic human islet single cell

description:
N01_C14R22
counts.csv


title: N01_C14R25 Non-diabetic human islet single cell

description:
N01_C14R25
counts.csv


title: N01_C14R23 Non-diabetic human islet single cell

description:
N01_C14R23
counts.csv


title: N01_C14R24 Non-diabetic human islet single cell

description:
N01_C14R24
counts.csv


title: N01_C14R26 Non-diabetic human islet single cell

description:
N01_C14R26
counts.csv


title: N01_C14R20 Non-diabetic human islet single cell

description:
N01_C14R20
counts.csv


title: N01_C14R15 Non-diabetic human islet single cell

description:
N01_C14R15
counts.csv


title: N01_C14R16 Non-diabetic human islet single cell

description:
N01_C14R16
counts.csv


title: N01_C14R14 Non-diabetic human islet single cell

description:
N01_C14R14
counts.csv


title: N01_C14R17 Non-diabetic human islet single cell

description:
N01_C14R17
counts.csv


title: N01_C14R13 Non-diabetic human islet single cell

description:
N01_C14R13
counts.csv


title: N01_C14R12 Non-diabetic human islet single cell

description:
N01_C14R12
counts.csv


title: N01_C14R10 Non-diabetic human islet single cell

description:
N01_C14R10
counts.csv


title: N01_C14R11 Non-diabetic human islet single cell

description:
N01_C14R11
counts.csv


title: N01_C14R08 Non-diabetic human islet single cell

description:
N01_C14R08
counts.csv


title: N01_C14R09 Non-diabetic human islet single cell

description:
N01_C14R09
counts.csv


title: N01_C14R29 Non-diabetic human islet single cell

description:
N01_C14R29
counts.csv


title: N01_C14R07 Non-diabetic human islet single cell

description:
N01_C14R07
counts.csv


title: N01_C14R05 Non-diabetic human islet single cell

description:
N01_C14R05
counts.csv


title: N01_C14R02 Non-diabetic human islet single cell

description:
N01_C14R02
counts.csv


title: N01_C14R01 Non-diabetic human islet single cell

description:
N01_C14R01
counts.csv


title: N01_C14R04 Non-diabetic human islet single cell

description:
N01_C14R04
counts.csv


title: N01_C14R19 Non-diabetic human islet single cell

description:
N01_C14R19
counts.csv


title: N01_C13R39 Non-diabetic human islet single cell

description:
N01_C13R39
counts.csv


title: N01_C13R40 Non-diabetic human islet single cell

description:
N01_C13R40
counts.csv


title: N01_C14R03 Non-diabetic human islet single cell

description:
N01_C14R03
counts.csv


title: N01_C13R37 Non-diabetic human islet single cell

description:
N01_C13R37
counts.csv


title: N01_C14R06 Non-diabetic human islet single cell

description:
N01_C14R06
counts.csv


title: N01_C13R38 Non-diabetic human islet single cell

description:
N01_C13R38
counts.csv


title: N01_C13R33 Non-diabetic human islet single cell

description:
N01_C13R33
counts.csv


title: N01_C13R36 Non-diabetic human islet single cell

description:
N01_C13R36
counts.csv


title: N01_C13R32 Non-diabetic human islet single cell

description:
N01_C13R32
counts.csv


title: N01_C13R30 Non-diabetic human islet single cell

description:
N01_C13R30
counts.csv


title: N01_C13R34 Non-diabetic human islet single cell

description:
N01_C13R34
counts.csv


title: N01_C13R35 Non-diabetic human islet single cell

description:
N01_C13R35
counts.csv


title: N01_C13R29 Non-diabetic human islet single cell

description:
N01_C13R29
counts.csv


title: N01_C13R27 Non-diabetic human islet single cell

description:
N01_C13R27
counts.csv


title: N01_C13R26 Non-diabetic human islet single cell

description:
N01_C13R26
counts.csv


title: N01_C13R25 Non-diabetic human islet single cell

description:
N01_C13R25
counts.csv


title: N01_C13R23 Non-diabetic human islet single cell

description:
N01_C13R23
counts.csv


title: N01_C13R24 Non-diabetic human islet single cell

description:
N01_C13R24
counts.csv


title: N01_C13R22 Non-diabetic human islet single cell

description:
N01_C13R22
counts.csv


title: N01_C13R20 Non-diabetic human islet single cell

description:
N01_C13R20
counts.csv


title: N01_C13R21 Non-diabetic human islet single cell

description:
N01_C13R21
counts.csv


title: N01_C13R19 Non-diabetic human islet single cell

description:
N01_C13R19
counts.csv


title: N01_C13R18 Non-diabetic human islet single cell

description:
N01_C13R18
counts.csv


title: N01_C13R17 Non-diabetic human islet single cell

description:
N01_C13R17
counts.csv


title: N01_C13R16 Non-diabetic human islet single cell

description:
N01_C13R16
counts.csv


title: N01_C13R14 Non-diabetic human islet single cell

description:
N01_C13R14
counts.csv


title: N01_C13R13 Non-diabetic human islet single cell

description:
N01_C13R13
counts.csv


title: N01_C13R11 Non-diabetic human islet single cell

description:
N01_C13R11
counts.csv


title: N01_C13R12 Non-diabetic human islet single cell

description:
N01_C13R12
counts.csv


title: N01_C13R31 Non-diabetic human islet single cell

description:
N01_C13R31
counts.csv


title: N01_C13R09 Non-diabetic human islet single cell

description:
N01_C13R09
counts.csv


title: N01_C13R08 Non-diabetic human islet single cell

description:
N01_C13R08
counts.csv


title: N01_C13R10 Non-diabetic human islet single cell

description:
N01_C13R10
counts.csv


title: N01_C13R07 Non-diabetic human islet single cell

description:
N01_C13R07
counts.csv


title: N01_C13R28 Non-diabetic human islet single cell

description:
N01_C13R28
counts.csv


title: N01_C13R02 Non-diabetic human islet single cell

description:
N01_C13R02
counts.csv


title: N01_C13R03 Non-diabetic human islet single cell

description:
N01_C13R03
counts.csv


title: N01_C13R06 Non-diabetic human islet single cell

description:
N01_C13R06
counts.csv


title: N01_C13R05 Non-diabetic human islet single cell

description:
N01_C13R05
counts.csv


title: N01_C12R39 Non-diabetic human islet single cell

description:
N01_C12R39
counts.csv


title: N01_C12R38 Non-diabetic human islet single cell

description:
N01_C12R38
counts.csv


title: N01_C13R01 Non-diabetic human islet single cell

description:
N01_C13R01
counts.csv


title: N01_C12R36 Non-diabetic human islet single cell

description:
N01_C12R36
counts.csv


title: N01_C12R37 Non-diabetic human islet single cell

description:
N01_C12R37
counts.csv


title: N01_C12R34 Non-diabetic human islet single cell

description:
N01_C12R34
counts.csv


title: N01_C12R35 Non-diabetic human islet single cell

description:
N01_C12R35
counts.csv


title: N01_C13R15 Non-diabetic human islet single cell

description:
N01_C13R15
counts.csv


title: N01_C12R32 Non-diabetic human islet single cell

description:
N01_C12R32
counts.csv


title: N01_C12R33 Non-diabetic human islet single cell

description:
N01_C12R33
counts.csv


title: N01_C12R31 Non-diabetic human islet single cell

description:
N01_C12R31
counts.csv


title: N01_C12R27 Non-diabetic human islet single cell

description:
N01_C12R27
counts.csv


title: N01_C12R26 Non-diabetic human islet single cell

description:
N01_C12R26
counts.csv


title: N01_C12R29 Non-diabetic human islet single cell

description:
N01_C12R29
counts.csv


title: N01_C12R28 Non-diabetic human islet single cell

description:
N01_C12R28
counts.csv


title: N01_C13R04 Non-diabetic human islet single cell

description:
N01_C13R04
counts.csv


title: N01_C12R30 Non-diabetic human islet single cell

description:
N01_C12R30
counts.csv


title: N01_C12R40 Non-diabetic human islet single cell

description:
N01_C12R40
counts.csv


title: N01_C12R23 Non-diabetic human islet single cell

description:
N01_C12R23
counts.csv


title: N01_C12R20 Non-diabetic human islet single cell

description:
N01_C12R20
counts.csv


title: N01_C12R19 Non-diabetic human islet single cell

description:
N01_C12R19
counts.csv


title: N01_C12R22 Non-diabetic human islet single cell

description:
N01_C12R22
counts.csv


title: N01_C12R18 Non-diabetic human islet single cell

description:
N01_C12R18
counts.csv


title: N01_C12R16 Non-diabetic human islet single cell

description:
N01_C12R16
counts.csv


title: N01_C12R17 Non-diabetic human islet single cell

description:
N01_C12R17
counts.csv


title: N01_C12R13 Non-diabetic human islet single cell

description:
N01_C12R13
counts.csv


title: N01_C12R12 Non-diabetic human islet single cell

description:
N01_C12R12
counts.csv


title: N01_C12R15 Non-diabetic human islet single cell

description:
N01_C12R15
counts.csv


title: N01_C12R14 Non-diabetic human islet single cell

description:
N01_C12R14
counts.csv


title: N01_C12R11 Non-diabetic human islet single cell

description:
N01_C12R11
counts.csv


title: N01_C12R10 Non-diabetic human islet single cell

description:
N01_C12R10
counts.csv


title: N01_C12R08 Non-diabetic human islet single cell

description:
N01_C12R08
counts.csv


title: N01_C12R21 Non-diabetic human islet single cell

description:
N01_C12R21
counts.csv


title: N01_C12R07 Non-diabetic human islet single cell

description:
N01_C12R07
counts.csv


title: N01_C12R06 Non-diabetic human islet single cell

description:
N01_C12R06
counts.csv


title: N01_C12R04 Non-diabetic human islet single cell

description:
N01_C12R04
counts.csv


title: N01_C12R25 Non-diabetic human islet single cell

description:
N01_C12R25
counts.csv


title: N01_C12R05 Non-diabetic human islet single cell

description:
N01_C12R05
counts.csv


title: N01_C12R24 Non-diabetic human islet single cell

description:
N01_C12R24
counts.csv


title: N01_C12R02 Non-diabetic human islet single cell

description:
N01_C12R02
counts.csv


title: N01_C12R01 Non-diabetic human islet single cell

description:
N01_C12R01
counts.csv


title: N01_C12R03 Non-diabetic human islet single cell

description:
N01_C12R03
counts.csv


title: N01_C11R39 Non-diabetic human islet single cell

description:
N01_C11R39
counts.csv


title: N01_C11R40 Non-diabetic human islet single cell

description:
N01_C11R40
counts.csv


title: N01_C11R38 Non-diabetic human islet single cell

description:
N01_C11R38
counts.csv


title: N01_C11R36 Non-diabetic human islet single cell

description:
N01_C11R36
counts.csv


title: N01_C11R32 Non-diabetic human islet single cell

description:
N01_C11R32
counts.csv


title: N01_C11R37 Non-diabetic human islet single cell

description:
N01_C11R37
counts.csv


title: N01_C11R34 Non-diabetic human islet single cell

description:
N01_C11R34
counts.csv


title: N01_C11R35 Non-diabetic human islet single cell

description:
N01_C11R35
counts.csv


title: N01_C11R33 Non-diabetic human islet single cell

description:
N01_C11R33
counts.csv


title: N01_C11R31 Non-diabetic human islet single cell

description:
N01_C11R31
counts.csv


title: N01_C11R30 Non-diabetic human islet single cell

description:
N01_C11R30
counts.csv


title: N01_C11R26 Non-diabetic human islet single cell

description:
N01_C11R26
counts.csv


title: N01_C11R24 Non-diabetic human islet single cell

description:
N01_C11R24
counts.csv


title: N01_C12R09 Non-diabetic human islet single cell

description:
N01_C12R09
counts.csv


title: N01_C11R22 Non-diabetic human islet single cell

description:
N01_C11R22
counts.csv


title: N01_C11R27 Non-diabetic human islet single cell

description:
N01_C11R27
counts.csv


title: N01_C11R28 Non-diabetic human islet single cell

description:
N01_C11R28
counts.csv


title: N01_C11R23 Non-diabetic human islet single cell

description:
N01_C11R23
counts.csv


title: N01_C11R29 Non-diabetic human islet single cell

description:
N01_C11R29
counts.csv


title: N01_C11R21 Non-diabetic human islet single cell

description:
N01_C11R21
counts.csv


title: N01_C11R17 Non-diabetic human islet single cell

description:
N01_C11R17
counts.csv


title: N01_C11R18 Non-diabetic human islet single cell

description:
N01_C11R18
counts.csv


title: N01_C11R19 Non-diabetic human islet single cell

description:
N01_C11R19
counts.csv


title: N01_C11R16 Non-diabetic human islet single cell

description:
N01_C11R16
counts.csv


title: N01_C11R20 Non-diabetic human islet single cell

description:
N01_C11R20
counts.csv


title: N01_C11R14 Non-diabetic human islet single cell

description:
N01_C11R14
counts.csv


title: N01_C11R15 Non-diabetic human islet single cell

description:
N01_C11R15
counts.csv


title: N01_C11R10 Non-diabetic human islet single cell

description:
N01_C11R10
counts.csv


title: N01_C11R11 Non-diabetic human islet single cell

description:
N01_C11R11
counts.csv


title: N01_C11R09 Non-diabetic human islet single cell

description:
N01_C11R09
counts.csv


title: N01_C11R12 Non-diabetic human islet single cell

description:
N01_C11R12
counts.csv


title: N01_C11R13 Non-diabetic human islet single cell

description:
N01_C11R13
counts.csv


title: N01_C11R25 Non-diabetic human islet single cell

description:
N01_C11R25
counts.csv


title: N01_C11R08 Non-diabetic human islet single cell

description:
N01_C11R08
counts.csv


title: N01_C11R05 Non-diabetic human islet single cell

description:
N01_C11R05
counts.csv


title: N01_C11R02 Non-diabetic human islet single cell

description:
N01_C11R02
counts.csv


title: N01_C11R03 Non-diabetic human islet single cell

description:
N01_C11R03
counts.csv


title: N01_C11R01 Non-diabetic human islet single cell

description:
N01_C11R01
counts.csv


title: N01_C11R04 Non-diabetic human islet single cell

description:
N01_C11R04
counts.csv


title: N01_C11R07 Non-diabetic human islet single cell

description:
N01_C11R07
counts.csv


title: N01_C10R39 Non-diabetic human islet single cell

description:
N01_C10R39
counts.csv


title: N01_C10R38 Non-diabetic human islet single cell

description:
N01_C10R38
counts.csv


title: N01_C10R35 Non-diabetic human islet single cell

description:
N01_C10R35
counts.csv


title: N01_C10R37 Non-diabetic human islet single cell

description:
N01_C10R37
counts.csv


title: N01_C10R36 Non-diabetic human islet single cell

description:
N01_C10R36
counts.csv


title: N01_C10R33 Non-diabetic human islet single cell

description:
N01_C10R33
counts.csv


title: N01_C10R34 Non-diabetic human islet single cell

description:
N01_C10R34
counts.csv


title: N01_C10R32 Non-diabetic human islet single cell

description:
N01_C10R32
counts.csv


title: N01_C10R31 Non-diabetic human islet single cell

description:
N01_C10R31
counts.csv


title: N01_C10R27 Non-diabetic human islet single cell

description:
N01_C10R27
counts.csv


title: N01_C10R28 Non-diabetic human islet single cell

description:
N01_C10R28
counts.csv


title: N01_C10R29 Non-diabetic human islet single cell

description:
N01_C10R29
counts.csv


title: N01_C10R26 Non-diabetic human islet single cell

description:
N01_C10R26
counts.csv


title: N01_C10R23 Non-diabetic human islet single cell

description:
N01_C10R23
counts.csv


title: N01_C10R25 Non-diabetic human islet single cell

description:
N01_C10R25
counts.csv


title: N01_C10R24 Non-diabetic human islet single cell

description:
N01_C10R24
counts.csv


title: N01_C10R22 Non-diabetic human islet single cell

description:
N01_C10R22
counts.csv


title: N01_C10R40 Non-diabetic human islet single cell

description:
N01_C10R40
counts.csv


title: N01_C10R21 Non-diabetic human islet single cell

description:
N01_C10R21
counts.csv


title: N01_C11R06 Non-diabetic human islet single cell

description:
N01_C11R06
counts.csv


title: N01_C10R20 Non-diabetic human islet single cell

description:
N01_C10R20
counts.csv


title: N01_C10R19 Non-diabetic human islet single cell

description:
N01_C10R19
counts.csv


title: N01_C10R17 Non-diabetic human islet single cell

description:
N01_C10R17
counts.csv


title: N01_C10R16 Non-diabetic human islet single cell

description:
N01_C10R16
counts.csv


title: N01_C10R18 Non-diabetic human islet single cell

description:
N01_C10R18
counts.csv


title: N01_C10R13 Non-diabetic human islet single cell

description:
N01_C10R13
counts.csv


title: N01_C10R14 Non-diabetic human islet single cell

description:
N01_C10R14
counts.csv


title: N01_C10R12 Non-diabetic human islet single cell

description:
N01_C10R12
counts.csv


title: N01_C10R15 Non-diabetic human islet single cell

description:
N01_C10R15
counts.csv


title: N01_C10R11 Non-diabetic human islet single cell

description:
N01_C10R11
counts.csv


title: N01_C10R09 Non-diabetic human islet single cell

description:
N01_C10R09
counts.csv


title: N01_C10R08 Non-diabetic human islet single cell

description:
N01_C10R08
counts.csv


title: N01_C10R10 Non-diabetic human islet single cell

description:
N01_C10R10
counts.csv


title: N01_C10R05 Non-diabetic human islet single cell

description:
N01_C10R05
counts.csv


title: N01_C10R03 Non-diabetic human islet single cell

description:
N01_C10R03
counts.csv


title: N01_C10R30 Non-diabetic human islet single cell

description:
N01_C10R30
counts.csv


title: N01_C09R40 Non-diabetic human islet single cell

description:
N01_C09R40
counts.csv


title: N01_C10R01 Non-diabetic human islet single cell

description:
N01_C10R01
counts.csv


title: N01_C09R39 Non-diabetic human islet single cell

description:
N01_C09R39
counts.csv


title: N01_C09R37 Non-diabetic human islet single cell

description:
N01_C09R37
counts.csv


title: N01_C09R36 Non-diabetic human islet single cell

description:
N01_C09R36
counts.csv


title: N01_C09R35 Non-diabetic human islet single cell

description:
N01_C09R35
counts.csv


title: N01_C09R33 Non-diabetic human islet single cell

description:
N01_C09R33
counts.csv


title: N01_C09R32 Non-diabetic human islet single cell

description:
N01_C09R32
counts.csv


title: N01_C09R31 Non-diabetic human islet single cell

description:
N01_C09R31
counts.csv


title: N01_C09R29 Non-diabetic human islet single cell

description:
N01_C09R29
counts.csv


title: N01_C09R30 Non-diabetic human islet single cell

description:
N01_C09R30
counts.csv


title: N01_C09R28 Non-diabetic human islet single cell

description:
N01_C09R28
counts.csv


title: N01_C09R27 Non-diabetic human islet single cell

description:
N01_C09R27
counts.csv


title: N01_C10R06 Non-diabetic human islet single cell

description:
N01_C10R06
counts.csv


title: N01_C10R07 Non-diabetic human islet single cell

description:
N01_C10R07
counts.csv


title: N01_C09R24 Non-diabetic human islet single cell

description:
N01_C09R24
counts.csv


title: N01_C09R23 Non-diabetic human islet single cell

description:
N01_C09R23
counts.csv


title: N01_C09R22 Non-diabetic human islet single cell

description:
N01_C09R22
counts.csv


title: N01_C09R26 Non-diabetic human islet single cell

description:
N01_C09R26
counts.csv


title: N01_C09R20 Non-diabetic human islet single cell

description:
N01_C09R20
counts.csv


title: N01_C09R25 Non-diabetic human islet single cell

description:
N01_C09R25
counts.csv


title: N01_C10R02 Non-diabetic human islet single cell

description:
N01_C10R02
counts.csv


title: N01_C09R16 Non-diabetic human islet single cell

description:
N01_C09R16
counts.csv


title: N01_C09R17 Non-diabetic human islet single cell

description:
N01_C09R17
counts.csv


title: N01_C09R21 Non-diabetic human islet single cell

description:
N01_C09R21
counts.csv


title: N01_C09R19 Non-diabetic human islet single cell

description:
N01_C09R19
counts.csv


title: N01_C09R38 Non-diabetic human islet single cell

description:
N01_C09R38
counts.csv


title: N01_C10R04 Non-diabetic human islet single cell

description:
N01_C10R04
counts.csv


title: N01_C09R34 Non-diabetic human islet single cell

description:
N01_C09R34
counts.csv


title: N01_C09R14 Non-diabetic human islet single cell

description:
N01_C09R14
counts.csv


title: N01_C09R15 Non-diabetic human islet single cell

description:
N01_C09R15
counts.csv


title: N01_C09R18 Non-diabetic human islet single cell

description:
N01_C09R18
counts.csv


title: N01_C09R12 Non-diabetic human islet single cell

description:
N01_C09R12
counts.csv


title: N01_C09R11 Non-diabetic human islet single cell

description:
N01_C09R11
counts.csv


title: N01_C09R13 Non-diabetic human islet single cell

description:
N01_C09R13
counts.csv


title: N01_C09R10 Non-diabetic human islet single cell

description:
N01_C09R10
counts.csv


title: N01_C09R08 Non-diabetic human islet single cell

description:
N01_C09R08
counts.csv


title: N01_C09R09 Non-diabetic human islet single cell

description:
N01_C09R09
counts.csv


title: N01_C09R07 Non-diabetic human islet single cell

description:
N01_C09R07
counts.csv


title: N01_C09R06 Non-diabetic human islet single cell

description:
N01_C09R06
counts.csv


title: N01_C09R05 Non-diabetic human islet single cell

description:
N01_C09R05
counts.csv


title: N01_C09R03 Non-diabetic human islet single cell

description:
N01_C09R03
counts.csv


title: N01_C09R04 Non-diabetic human islet single cell

description:
N01_C09R04
counts.csv


title: N01_C09R01 Non-diabetic human islet single cell

description:
N01_C09R01
counts.csv


title: N01_C09R02 Non-diabetic human islet single cell

description:
N01_C09R02
counts.csv


title: N01_C08R37 Non-diabetic human islet single cell

description:
N01_C08R37
counts.csv


title: N01_C08R38 Non-diabetic human islet single cell

description:
N01_C08R38
counts.csv


title: N01_C08R39 Non-diabetic human islet single cell

description:
N01_C08R39
counts.csv


title: N01_C08R36 Non-diabetic human islet single cell

description:
N01_C08R36
counts.csv


title: N01_C08R30 Non-diabetic human islet single cell

description:
N01_C08R30
counts.csv


title: N01_C08R31 Non-diabetic human islet single cell

description:
N01_C08R31
counts.csv


title: N01_C08R33 Non-diabetic human islet single cell

description:
N01_C08R33
counts.csv


title: N01_C08R32 Non-diabetic human islet single cell

description:
N01_C08R32
counts.csv


title: N01_C08R34 Non-diabetic human islet single cell

description:
N01_C08R34
counts.csv


title: N01_C08R29 Non-diabetic human islet single cell

description:
N01_C08R29
counts.csv


title: ∆dam∆metJ_SPI2inducing

city: Boston

first: Jeffrey

last: Bourgeois

address: 136 Harrison Ave

institute: Tufts University

library_source: genomic

data_processing:
Library strategy: Single-molecule real-time (SMRT) sequencing
m6A methylation calls were performed using the pbsmrtpipe base modification and motif detection pipeline (Smrtlink v7.0.1.66975 ) with Salmonella enterica serovar Typhimurium strain 14028s (ASM2216v1) as the reference genome . For sites at or above 50x coverage, sites with a phred-based quality score greater than 40 were marked as “1”, for strong evidence of methylation; sites with >=50x coverage but below QV40 were marked as “0” for unlikely to be methylated.  For sites below 50x coverage, methylation status was not estimated. Assigning methylated bases to motif(s) was performed by comparing the context of the base to known or identified motifs using Microsoft Excel.
Genome_build: Salmonella enterica serovar Typhimurium strain 14028s (ASM2216v1)
Supplementary_files_format_and_content: WT_MetJ_Dam_ProcessedSMRTseq.xlsx

molecule: genomic DNA

organism: Salmonella enterica subsp. enterica serovar Typhimurium

source_name: ∆dam ∆metJ Salmonella enterica sero. Typhimurium (14028s)

growth_protocol: For SPI-1 inducing conditions, bacteria were grown overnight at 37C in LB broth and subcultured 1:33 into LB broth before growth for 2 hours and 40 minutes. For SPI-2 inducing conditons, bacteria were grown overnight at 37C in LB broth and subcultured 1:50 in LPM media (see Coombes et al. 2004) for 4 hours.

extract_protocol:
DNA was extracted using a Dneasy Blood and Tissue Kit. The optional RNase step was performed.
Multiplexed SMRTbell libraries for sequencing on the PacBio Sequel system were prepare from 1 μg of each microbial gDNA sample.  Shearing of gDNA was performed using g-TUBE and centrifugation at 2029 x g for 2 minutes to achieve a target mode size of 10 kb - 15 kb.SMRTbell libraries were then prepared using the SMRTbell® Express Template Prep Kit 2.0.  Two pools of 8 indexed libraries were prepared. Each pool was then sequenced on a PacBio Sequel SMRTcell using sequencing chemistry 3.0 and 10 hour movie length.

tag: genotype

value: delta-dam delta-metJ

value: SPI-2 inducing conditions


title: N01_C08R27 Non-diabetic human islet single cell

description:
N01_C08R27
counts.csv


title: ∆dam_SPI2inducing

source_name: ∆dam Salmonella enterica sero. Typhimurium (14028s)

value: delta-dam


title: ∆metJ_SPI2inducing

source_name: ∆metJ Salmonella enterica sero. Typhimurium (14028s)

value: delta-metJ


title: ∆dam∆metJ_SPI1inducing

value: SPI-1 inducing conditions


title: N01_C08R26 Non-diabetic human islet single cell

description:
N01_C08R26
counts.csv


title: N01_C08R24 Non-diabetic human islet single cell

description:
N01_C08R24
counts.csv


title: ∆dam_SPI1inducing


title: N01_C08R22 Non-diabetic human islet single cell

description:
N01_C08R22
counts.csv


title: ∆metJ_SPI1inducing


title: N01_C08R40 Non-diabetic human islet single cell

description:
N01_C08R40
counts.csv


title: N01_C08R21 Non-diabetic human islet single cell

description:
N01_C08R21
counts.csv


title: WT_SPI1inducing

source_name: Salmonella enterica sero. Typhimurium (14028s)

value: WT


title: N01_C08R23 Non-diabetic human islet single cell

description:
N01_C08R23
counts.csv


title: N01_C08R20 Non-diabetic human islet single cell

description:
N01_C08R20
counts.csv


title: N01_C08R35 Non-diabetic human islet single cell

description:
N01_C08R35
counts.csv


title: N01_C08R19 Non-diabetic human islet single cell

description:
N01_C08R19
counts.csv


title: ∆metJ_SPI1_inducing_SMRT-seq

data_processing:
library strategy: Single-molecule real-time (SMRT) sequencing
m6A methylation calls were performed using the pbsmrtpipe base modification and motif detection pipeline (Smrtlink v7.0.1.66975 ) with Salmonella enterica serovar Typhimurium strain 14028s (ASM2216v1) as the reference genome . For sites at or above 50x coverage, sites with a phred-based quality score greater than 40 were marked as “1”, for strong evidence of methylation; sites with >=50x coverage but below QV40 were marked as “0” for unlikely to be methylated.  For sites below 50x coverage, methylation status was not estimated. Assigning methylated bases to motif(s) was performed by comparing the context of the base to known or identified motifs using Microsoft Excel.
Genome_build: Salmonella enterica serovar Typhimurium strain 14028s (ASM2216v1)
Supplementary_files_format_and_content: WT_MetJ_YhdJ_ProcessedSMRTseq.xlsx

source_name: S. Typhimurium ∆metJ

growth_protocol: For SPI-1 inducing conditions, bacteria were grown overnight at 37C in LB broth and subcultured 1:33 into LB broth before growth for 2 hours and 40 minutes.

value: {delta}metJ

value: SPI-1 Inducing Conditions


title: ∆yhdJ∆metJ_SPI1_inducing_SMRT-seq

source_name: S. Typhimurium ∆dam∆metJ

value: {delta}yhdJ{delta}metJ


title: N01_C08R18 Non-diabetic human islet single cell

description:
N01_C08R18
counts.csv


title: ∆yhdJ_SPI1_inducing_SMRT-seq

source_name: S. Typhimurium ∆dam

value: {delta}yhdJ


title: N01_C08R28 Non-diabetic human islet single cell

description:
N01_C08R28
counts.csv


title: N01_C08R25 Non-diabetic human islet single cell

description:
N01_C08R25
counts.csv


title: WT_SPI2inducing


title: WT_SPI1_inducing_SMRT-seq

source_name: S. Typhimurium WT

value: wild type


title: N01_C08R16 Non-diabetic human islet single cell

description:
N01_C08R16
counts.csv


title: N01_C08R17 Non-diabetic human islet single cell

description:
N01_C08R17
counts.csv


title: N01_C08R14 Non-diabetic human islet single cell

description:
N01_C08R14
counts.csv


title: N01_C08R15 Non-diabetic human islet single cell

description:
N01_C08R15
counts.csv


title: N01_C08R13 Non-diabetic human islet single cell

description:
N01_C08R13
counts.csv


title: N01_C08R12 Non-diabetic human islet single cell

description:
N01_C08R12
counts.csv


title: N01_C08R10 Non-diabetic human islet single cell

description:
N01_C08R10
counts.csv


title: SAMPLE 9 [TC12W]

type: RNA

city: Maastricht

first: Carlos

middle: Julio

last: Peniche Silva

state: Limburg

address: Universiteitssingel 40

department: cBITE

country: Netherlands

institute: MERLN/Maastricht University

description: Control

data_processing:
The normalization and all the data analysis were performed according to the manufacturers instructions using their web-based software package: https://dataanalysis2.qiagen.com/pcr/analysis/
For the normalization it uses the average of two housekeeping genes: LDHA and RPLP1
For the normalization, a Ct Cut-off value of 35 was used.
Target gene signals normalized to housekeeping genes; 2^-ΔCt, where -ΔCt = -(Ct_Target − Ct_HKG)
The web-based software package automatically performs all deltadeltaCt based fold-change calculations from the uploaded raw threshold cycle data.

label: SYBER Green

molecule: total RNA

organism: Rattus norvegicus

source_name: Rat patellar enthesis

label_protocol: The RT2 First strand cDNA synthesis kit and the RT2 SYBER green Mastermix were used following Qiagen instructions

extract_protocol: Total RNA was extracted by the standard and well established phenol-chloroform extraction

value: Rat patellar enthesis

tag: time

value: 12 weeks

tag: treatment

value: Suture (tendon-to-tendon)

tag: experimental group

value: Control


title: N01_C08R11 Non-diabetic human islet single cell

description:
N01_C08R11
counts.csv


title: SAMPLE 8 [TC 4W]

description: Control

value: 4 weeks


title: N01_C08R09 Non-diabetic human islet single cell

description:
N01_C08R09
counts.csv

value: inlet cells


title: SAMPLE 6 [ED 4W]

description: Control

value: Suture (tendon-to-bone)


title: SAMPLE 7 [ED 12W]

description: Control


title: N01_C08R08 Non-diabetic human islet single cell

description:
N01_C08R08
counts.csv


title: N01_C08R06 Non-diabetic human islet single cell

description:
N01_C08R06
counts.csv


title: SAMPLE 5 [S-AT 12W]

description: Treatment

value: Silk fibroin scaffold (S-AT)

value: Treatment


title: N01_C08R07 Non-diabetic human islet single cell

description:
N01_C08R07
counts.csv


title: KI SLAM-seq AS rep 2

city: Solna

first: Vladislav

last: Kuzin

state: Stockholm

address: Solnavägen 9

department: Cell and Molecular Biology

country: Sweden

institute: Karolinska Institute

description:
KI_SLAM_AS_2
counts_DE_asynch.csv
TC_DE_asynch.csv

data_processing:
Library strategy: SLAM-seq
After merging fastq files of technical replicates, we executed the SlamDunk v0.2.4 pipeline with the all function with default arguments (aligning to the human genome hg38, trimming 12 bp from the 5´ end, using up to 100 alignments for multi-mapper and activating the multi-mapper retention strategy, filtering variants with 0.2 variant fraction and cutting-off of ≥ 27 for filtering the base-quality).
Gene and GRCh38 3´ UTR annotations were obtained from the UCSU table browser (https://genome.ucsc.edu/cgi-bin/hgTables, GRCh38/hg38, Ref-Seq Curated) in bed format.
The T > C reads were filtered for having ≥ 2 T > C transitions.
Raw reads counts were combined into count matrices of all read counts and read counts bearing T > C mutations. For the all read count matrix, genes with low read counts were filtered by keeping only genes with row sum ≥ 10 reads.
Differential gene expression calling was performed on both matrices using DESeq2 (version 1.26.0) or Edge R with the default settings. The size factors were estimated based on the total mRNA reads for global normalization. Differentially expressed genes (LFC ≥ 0.7, adjusted p-value 0.1) were selected for further analysis and visualization
Genome_build: hg38
Supplementary_files_format_and_content: Format: .csv documents
Supplementary_files_format_and_content: Contents: total counts (total RNA) and TC conversions counts (nascent RNA)

growth_protocol: Human colon carcinoma HCT116WT cells and their derived clone HCT116KI (Baranello et al, Cell 2016) cells were grown in high glucose (4.5g/L) DMEM containing 10% FBS in a 37ºC incubator supplied with 5% CO2.

extract_protocol:
RNA isolation was performed in the dark, following instructions in the SLAMseq Kinetics Kit – Anabolic Kinetics Module (Lexogen, 061.24) with the following modifications: frozen samples were heated for 5 min at 65 °C and, after addition of 200 µl chloroform:isoamylalcohol mix (24:1), further incubated for 15 min at 65 °C under vigorous shaking and repeated vortexing. The aqueous phase was separated by centrifugation and RNA was precipitated overnight at -20°C. Washing of the RNA pellet was performed twice with 1ml and 0.18 ml 75% ETOH (plus reducing agent), respectively. For resuspension in H2O, RNA was incubated for 15 min at 55 °C and 10 min on ice and repeatedly pipetted up and down. RNA concentration and quality was determined by capillary electrophoresis using the RNA 6000 nano kit (agilent, 5067-1511) and bioanalyzer (agilent). 4.5 µg RNA was alkylated by addition of Iodoacetamide following the manufacturer's instructions, but enhancing solubilization of the purified RNA by 15 min incubation at 55 °C.
After quality control via capillary electrophoresis (RNA 6000 nano kit (agilent, 5067-1511), cDNA libraries were prepared from 500 ng RNA using the QuantSeq 3‘ mRNA-Seq Library Prep Kit for Illumina (FWD) (Lexogen, catalogue 015.24) and 16 PCR cycles for library amplification. DNA concentration and molarity were determined using the Qubit dsDNA HS Assay Kit (Thermo Fisher, Q33230) and Bioanalyzer High Sensitivity DNA Kit (5067-4626), respectively. 4 nM Libraries were pooled and sequenced using the NextSeq 500/550 High Output Kit v2.5 (Illumina) performing single end sequencing with 150 bp reads.

treatment_protocol: Asynchronous cells, cells were grown to 80% confluence and the medium was replaced with fresh medium containing 100 μM S4U. After 45 min incubation, the supernatant was removed and attached cells were scraped in 1 ml Trizol (Invitrogen, 15596018).

tag: cell type

value: Human colon carcinoma

value: Top1 Knock-In

tag: synchronization

value: Asynchronous


title: WT SLAM-seq AS rep 1

description:
WT_SLAM_AS_1
counts_DE_asynch.csv
TC_DE_asynch.csv

value: Wild type


title: WT SLAM-seq AS rep 2

description:
WT_SLAM_AS_2
counts_DE_asynch.csv
TC_DE_asynch.csv


title: SAMPLE 3 [S-MT 12W]

description: Treatment

value: Silk fibroin scaffold (S-MT)


title: SAMPLE 4 [S-AT 4W]

description: Treatment


title: N01_C08R04 Non-diabetic human islet single cell

description:
N01_C08R04
counts.csv


title: SAMPLE 2 [S-MT 4W]

description: Treatment


title: N01_C08R03 Non-diabetic human islet single cell

description:
N01_C08R03
counts.csv


title: N01_C08R02 Non-diabetic human islet single cell

description:
N01_C08R02
counts.csv


title: KI SLAM-seq 40 rep 1

growth_protocol: Human colon carcinoma HCT116WT cells and their derived clone HCT116KI (Baranello et al, Cell 2016) cells were grown in high glucose (4.5g/L) DMEM containing 10% FBS in a 37ºC incubator supplied with 5% CO2. Cells were blocked in S phase by addition of 2.5mM thymidine for 19-24h and, after washing with fresh medium, transferred in fresh medium containing 400ng/ml nocodazole and allowed to progress to mitosis.

treatment_protocol: Cells were blocked in S phase by addition of 2.5mM thymidine for 19-24h and, after washing with fresh medium, transferred in fresh medium containing 400ng/ml nocodazole and allowed to progress to mitosis. Mitotic cells were harvested by mitotic shake-off in PBS. Cells were resuspended in fresh medium and either directly treated with 100uM S4U for 45 min (mid 0 timepoint) in the dark or released for 40 min before addition of S4U (late 40 timepoint). Cells in the supernatant were collected by centrifugation, while attached cells were scraped in 1ml Trizol (Invitrogen, 15596018) and combined with the cell pellet.

value: Late


title: KI SLAM-seq 40 rep 2


title: SAMPLE 1 [Native]

description: Reference

value: Reference


title: N01_C08R01 Non-diabetic human islet single cell

description:
N01_C08R01
counts.csv


title: KI SLAM-seq 0 rep 1

value: Mid


title: WT SLAM-seq 40 rep 2


title: KI SLAM-seq AS rep 1

description:
KI_SLAM_AS_1
counts_DE_asynch.csv
TC_DE_asynch.csv


title: N01_C08R05 Non-diabetic human islet single cell

description:
N01_C08R05
counts.csv


title: N01_C07R38 Non-diabetic human islet single cell

description:
N01_C07R38
counts.csv


title: N01_C07R36 Non-diabetic human islet single cell

description:
N01_C07R36
counts.csv


title: N01_C07R37 Non-diabetic human islet single cell

description:
N01_C07R37
counts.csv


title: WT SLAM-seq 0 rep 2


title: WT SLAM-seq 40 rep 1


title: KI H3K4me3 60 rep 2

data_processing:
FastQC and MultiQC were used for quality control of the .fastq-files
Adapter and poor quality read trimming was performed with cutadapt
The ChIP-seq data was mapped using bowtie2.
Aligned files were sorted, deduplicated and indexes using SortSam, MarkDuplicates and BuildBamIndex from Pircard package.
BigWig files were generated with bamCoverage from Deeptools package.
Merging of duplicates for visualization was performed using MergeSamFiles from Pickard package.
Genome_build: hg38
Supplementary_files_format_and_content: Bam coverage BigWig files, normalized to RPM.

growth_protocol: Human colon carcinoma HCT116WT cells and their derived clone HCT116KI (Baranello et al, Cell 2016) cells were grown in high glucose (4.5g/L) DMEM containing 10% FBS in a 37ºC incubator supplied with 5% CO2. HCT116 mAID-TOP1 were grown in media containing 1µg/ml puromycin and 125µg/ml hygromycin B.

extract_protocol:
Briefly 2.5x10^6 cells were crosslinked with 2mM DSG in PBS for 50 min with gentle agitation, washed with PBS and incubated in PBS-1% formaldehyde for 5 minutes. Cross-linking was stopped by the addition of 125 mM glycine (final concentration) and cells were washed twice with cold PBS. After harvesting cells by scraping (attached cells) and centrifugation (detached cells), the pellet was washed once with PBS plus 0.5% BSA and resuspended in TE-SDS 0.1% (10 mM Tris-HCl pH 8.0, 1 mM EDTA pH 8.0, SDS 0.1%) supplemented with complete protease inhibitor tablet (Roche) to a final concentration of 2.5x10^6 cells/ml. Samples were sonicated for 20 minutes with Covaris ME220 sonicator using the 1ml High Cell protocol (Peak power: 75, Duty % factor: 15, Cycles/Burst: 1000, Average power: 11.25) to produce chromatin fragments of 200-400 bp on average. After clarification by centrifugation, sonicated extracts were adjusted to the conditions of RIPA buffer (10mM Tris pH 8.0, 1mM EDTA pH 8.0, 1% Triton x100, 0.1% SDS, 200mM NaCl, Na Deoxycholate 0.1%). 2 µg of anti-RNAPII (ab5408), anti-TOP1 (ab109374), anti-H3K4me3 (millipore, 04-745) were mixed with 30 µl of Dynabeads Protein A (Invitrogen) and incubated at 4°C for 6 h with rotation. Chromatin from 2.5×10^6 cells was added to the Protein A-antibody complexes and incubated overnight at 4°C with rotation. Immunoprecipitates were washed twice with RIPA buffer (10 mM Tris-HCl pH 8.0, 1 mM EDTA pH 8.0, 1% TritonX100, 0.1% Na-Deoxycholate, 0.1% SDS, 200mM NaCl); twice with RIPA buffer plus 300mM NaCl; once with LiCl buffer (10mM Tris-HCl pH 8.0, 1mM EDTA pH 8.0, 250mM LiCl, 0.5% NP40, 0.5% Na-Deoxycholate); and twice with TE. The beads were then resuspended in 100 µl TE plus 0.25% SDS supplemented with proteinase K (500µg/ml, Thermo Fisher) and incubated overnight at 65ºC. The DNA was recovered from the eluate by phenol chloroform extraction followed by ethanol precipitation in the presence of 20 mg of GlycoBlue (Invitrogen) and dissolved in TE.
DNA from ChIP was quantified with the Qubit dsDNA HS Assay Kit. Sequencing libraries were created according to the ThruPLEX DNA-seq kit protocol (Takara). Size selection was performed in the range of 200-700bp with AMPure XP beads and confirmed using the Agilent High Sensitivity DNA Kit on the Agilent 2100 Bioanalyzer. Libraries were pooled and sequenced using the NextSeq 500/550 High Output Kit v2.5 (Illumina). The sequencing run was Single End and Dual Index with 75 bp reads.

treatment_protocol: Cells were blocked in S phase by addition of 2.5mM thymidine (+ 100 µM auxinole, 1µg/ml puromycin and 125µg/ml hygromycin B, for HCT116 CMV-OsTIR1 mAID-Top1) for 19-24h and, after washing with fresh medium, transferred in fresh medium containing 400ng/ml nocodazole (+ 100 µM auxinole for HCT116 CMV-OsTIR1 mAID-Top1) and allowed to progress to mitosis. Mitotic cells were harvested by mitotic shake-off. For early (PM) timepoint, shake-off and fixation was performed in the presence of nocodazole, for mid and late (0 and 40/60) timepoints shake-off was performed in PBS and then cells were fixed after 0 and 40/60 minutes respectively.

tag: chip antibody

value: H3K4me3 (Millipore, 04-745)


title: KI H3K4me3 60 rep 1


title: N01_C07R33 Non-diabetic human islet single cell

description:
N01_C07R33
counts.csv


title: N01_C07R32 Non-diabetic human islet single cell

description:
N01_C07R32
counts.csv


title: N01_C07R31 Non-diabetic human islet single cell

description:
N01_C07R31
counts.csv


title: KI SLAM-seq 0 rep 2


title: N01_C07R40 Non-diabetic human islet single cell

description:
N01_C07R40
counts.csv


title: KI H3K4me3 0 rep 2


title: N01_C07R30 Non-diabetic human islet single cell

description:
N01_C07R30
counts.csv


title: WT H3K4me3 60 rep 2


title: N01_C07R29 Non-diabetic human islet single cell

description:
N01_C07R29
counts.csv


title: N01_C07R28 Non-diabetic human islet single cell

description:
N01_C07R28
counts.csv


title: KI H3K4me3 PM rep 2

value: Early


title: N01_C07R27 Non-diabetic human islet single cell

description:
N01_C07R27
counts.csv


title: N01_C07R39 Non-diabetic human islet single cell

description:
N01_C07R39
counts.csv


title: KI H3K4me3 PM rep 1


title: WT H3K4me3 0 rep 1


title: WT H3K4me3 0 rep 2


title: KI H3K4me3 0 rep 1


title: WT SLAM-seq 0 rep 1


title: N01_C07R26 Non-diabetic human islet single cell

description:
N01_C07R26
counts.csv


title: N01_C07R34 Non-diabetic human islet single cell

description:
N01_C07R34
counts.csv


title: WT H3K4me3 60 rep 1


title: WT H3K4me3 PM rep 2


title: N01_C07R23 Non-diabetic human islet single cell

description:
N01_C07R23
counts.csv


title: N01_C07R24 Non-diabetic human islet single cell

description:
N01_C07R24
counts.csv


title: WT H3K4me3 PM rep 1


title: N01_C07R22 Non-diabetic human islet single cell

description:
N01_C07R22
counts.csv


title: N01_C07R35 Non-diabetic human islet single cell

description:
N01_C07R35
counts.csv


title: KI Top1 0 rep 2


title: N01_C07R21 Non-diabetic human islet single cell

description:
N01_C07R21
counts.csv


title: KI Top1 0 rep 1


title: N01_C07R20 Non-diabetic human islet single cell

description:
N01_C07R20
counts.csv


title: KI Top1 PM rep 1


title: KI Top1 60 rep 2


title: N01_C07R19 Non-diabetic human islet single cell

description:
N01_C07R19
counts.csv


title: N01_C07R18 Non-diabetic human islet single cell

description:
N01_C07R18
counts.csv


title: WT Top1 60 rep 2


title: KI Top1 PM rep 2


title: WT Top1 60 rep 1


title: N01_C07R17 Non-diabetic human islet single cell

description:
N01_C07R17
counts.csv


title: N01_C07R16 Non-diabetic human islet single cell

description:
N01_C07R16
counts.csv


title: N01_C07R25 Non-diabetic human islet single cell

description:
N01_C07R25
counts.csv


title: WT Top1 0 rep 2


title: N01_C07R14 Non-diabetic human islet single cell

description:
N01_C07R14
counts.csv


title: WT Top1 PM rep 2


title: N01_C07R13 Non-diabetic human islet single cell

description:
N01_C07R13
counts.csv


title: N01_C07R12 Non-diabetic human islet single cell

description:
N01_C07R12
counts.csv


title: N01_C07R15 Non-diabetic human islet single cell

description:
N01_C07R15
counts.csv


title: WT Top1 PM rep 1


title: KI Top1 60 rep 1


title: Auxin RNAPII 40 rep 2

source_name: HCT116 CMV-OsTIR1mAIDTop1

value: RNAPII (Abcam 5408)

value: 90min 500uM auxin + 30min CPT 20uM


title: N01_C07R11 Non-diabetic human islet single cell

description:
N01_C07R11
counts.csv


title: N01_C07R09 Non-diabetic human islet single cell

description:
N01_C07R09
counts.csv


title: Auxin RNAPII 40 rep 1


title: Auxin RNAPII 0 rep 1


title: Auxin RNAPII 0 rep 2


title: N01_C07R07 Non-diabetic human islet single cell

description:
N01_C07R07
counts.csv


title: Auxin RNAPII PM rep 2

value: 80min 500uM auxin + 30min CPT 20uM


title: N01_C07R06 Non-diabetic human islet single cell

description:
N01_C07R06
counts.csv

value: inlet cells


title: N01_C07R05 Non-diabetic human islet single cell

description:
N01_C07R05
counts.csv


title: Auxin RNAPII PM rep 1


title: N01_C07R04 Non-diabetic human islet single cell

description:
N01_C07R04
counts.csv


title: N01_C07R03 Non-diabetic human islet single cell

description:
N01_C07R03
counts.csv


title: Auxinole RNAPII 40 rep 1

value: 120min100uM auxinole before shake-off


title: Auxinole RNAPII 0 rep 2


title: Auxinole RNAPII PM rep 2

value: 110min 100uM auxinole before shake-off


title: N01_C07R01 Non-diabetic human islet single cell

description:
N01_C07R01
counts.csv


title: N01_C07R02 Non-diabetic human islet single cell

description:
N01_C07R02
counts.csv


title: Auxinole RNAPII 0 rep 1


title: N01_C06R39 Non-diabetic human islet single cell

description:
N01_C06R39
counts.csv


title: KI RNAPII 60 rep 2


title: N01_C06R40 Non-diabetic human islet single cell

description:
N01_C06R40
counts.csv


title: N01_C07R10 Non-diabetic human islet single cell

description:
N01_C07R10
counts.csv


title: KI RNAPII 60 rep 1


title: N01_C06R38 Non-diabetic human islet single cell

description:
N01_C06R38
counts.csv


title: KI RNAPII 0 rep 1


title: N01_C07R08 Non-diabetic human islet single cell

description:
N01_C07R08
counts.csv


title: KI RNAPII 0 rep 2


title: WT Top1 0 rep 1


title: N01_C06R37 Non-diabetic human islet single cell

description:
N01_C06R37
counts.csv


title: KI RNAPII PM rep 2


title: KI RNAPII PM rep 1


title: N01_C06R35 Non-diabetic human islet single cell

description:
N01_C06R35
counts.csv


title: N01_C06R34 Non-diabetic human islet single cell

description:
N01_C06R34
counts.csv


title: N01_C06R33 Non-diabetic human islet single cell

description:
N01_C06R33
counts.csv


title: N01_C06R32 Non-diabetic human islet single cell

description:
N01_C06R32
counts.csv


title: WT RNAPII 60 rep 2


title: Auxinole RNAPII 40 rep 2


title: WT RNAPII 0 rep 2


title: N01_C06R31 Non-diabetic human islet single cell

description:
N01_C06R31
counts.csv


title: N01_C06R30 Non-diabetic human islet single cell

description:
N01_C06R30
counts.csv


title: WT RNAPII 60 rep 1


title: Auxinole RNAPII PM rep 1


title: N01_C06R29 Non-diabetic human islet single cell

description:
N01_C06R29
counts.csv


title: WT RNAPII PM rep 1


title: WT RNAPII PM rep 2


title: N01_C06R27 Non-diabetic human islet single cell

description:
N01_C06R27
counts.csv


title: N01_C06R36 Non-diabetic human islet single cell

description:
N01_C06R36
counts.csv


title: N01_C06R25 Non-diabetic human islet single cell

description:
N01_C06R25
counts.csv


title: N01_C06R24 Non-diabetic human islet single cell

description:
N01_C06R24
counts.csv


title: N01_C06R26 Non-diabetic human islet single cell

description:
N01_C06R26
counts.csv


title: LKR10Pool25_T1

city: San Francisco

first: David

last: Simpson

state: California

address: 1550 4th Street

institute: UCSF

data_processing:
Library strategy: shRNAseq
Original fastq files for each GAIIx run were composed of 30-60 multiplexed samples. Each fastq was split by a barcode identifier using the FASTX-toolkit barcode_splitter.pl script
Count files were created in R (v. 3.1.1) using the edgeR package (v. 3.6.8) processHairpinReads function with no mismatches or shifting allowed, shRNAs with no counts were filtered out and all shRNAs were given an extra count to avoid dividing by zero counts
Analysis of shRNA abundance was performed in edgeR using a time-course design and generalized linear models to compare the initial (T0) and final (T1) timepoints of the untreated cells and the the final timepoints of untreated and cisplatin treated cells and a likelihood ratio test (using the glmLRT function) was used to report log2 fold change scores and significance.
Genome_build: no alignment necessary
Supplementary_files_format_and_content: tab delimited text files containing either counts for each shRNA (*.Counts.txt) or log2 fold change and likelihood ratio scores for each shRNA (*Analysis.txt)

organism: Mus musculus

source_name: primary murine lung tumor organoids

growth_protocol: Primary lung tumor cells isolated from the KRAS/P53/YFP GEMM were depleted for CD45, CD31, and TER119, and 2x10^6 cells were spinfected with lentiviral shRNA libraries (100 shRNA/pool at an MOI <0.5) and seeded in equal parts Matrigel and 2x SCM (DMEM;F12, 10% FBS, and supplemented with N2 supplement, BPE, 10 ng/mL EGF, 10ng/mL FGF, and antibiotic/antimycotic) and overlayed with 1x SCM to grow into primary tumor spheres.

extract_protocol:
Genomic DNA was extracted using the Qiagen DNeasy Blood & Tissue kit
Lentiviral pLKO shRNA vectors were amplified using PCR with ExTaq, and each sample was given direct barcodes for multiplexing and Illumina compatible adapters using a secondary PCR step

treatment_protocol: Primary tumor spheres were selected with 1ug/mL Puromycin from 24h-72 hours in culture. After 96 hours, cells were treated with 1µM Cisplatin. After 7 days in culture, the first timepoint was collected as genomic DNA from 50% of cells, and the remaining 50% of cells were re-seeeded to form secondary spheres which were collected as genomic DNA after day 7 as secondary spheres.

value: primary murine lung tumor organoids

tag: timepoint

tag: replicate

tag: strain


title: LKR10Pool24_T1


title: LKR10Pool25_T0


title: N01_C06R23 Non-diabetic human islet single cell

description:
N01_C06R23
counts.csv


title: LKR10Pool23_T0


title: N01_C06R21 Non-diabetic human islet single cell

description:
N01_C06R21
counts.csv


title: LKR10Pool23_T1


title: LKR10Pool22_T0


title: LKR10Pool22_T1


title: LKR10Pool24_T0


title: N01_C06R22 Non-diabetic human islet single cell

description:
N01_C06R22
counts.csv


title: N01_C06R20 Non-diabetic human islet single cell

description:
N01_C06R20
counts.csv


title: WT RNAPII 0 rep 1

value: Human colon carcinoma


title: LKR10Pool21_T1


title: N01_C06R19 Non-diabetic human islet single cell

description:
N01_C06R19
counts.csv


title: N01_C06R28 Non-diabetic human islet single cell

description:
N01_C06R28
counts.csv


title: N01_C06R17 Non-diabetic human islet single cell

description:
N01_C06R17
counts.csv


title: LKR10Pool20_T1


title: LKR10Pool21_T0


title: LKR10Pool20_T0


title: N01_C06R16 Non-diabetic human islet single cell

description:
N01_C06R16
counts.csv


title: LKR10Pool19_T1


title: N01_C06R15 Non-diabetic human islet single cell

description:
N01_C06R15
counts.csv


title: LKR10Pool19_T0


title: N01_C06R14 Non-diabetic human islet single cell

description:
N01_C06R14
counts.csv


title: LKR10Pool18_T1


title: N01_C06R12 Non-diabetic human islet single cell

description:
N01_C06R12
counts.csv


title: N01_C06R13 Non-diabetic human islet single cell

description:
N01_C06R13
counts.csv


title: LKR10Pool18_T0


title: LKR10Pool17_T1


title: N01_C06R11 Non-diabetic human islet single cell

description:
N01_C06R11
counts.csv


title: LKR10Pool17_T0


title: N01_C06R08 Non-diabetic human islet single cell

description:
N01_C06R08
counts.csv


title: N01_C06R09 Non-diabetic human islet single cell

description:
N01_C06R09
counts.csv


title: N01_C06R07 Non-diabetic human islet single cell

description:
N01_C06R07
counts.csv


title: LKR10Pool15_T1


title: N01_C06R06 Non-diabetic human islet single cell

description:
N01_C06R06
counts.csv


title: LKR10Pool16_T0


title: LKR10Pool16_T1


title: LKR10Pool15_T0


title: LKR10Pool14_T1


title: N01_C06R18 Non-diabetic human islet single cell

description:
N01_C06R18
counts.csv


title: N01_C06R05 Non-diabetic human islet single cell

description:
N01_C06R05
counts.csv


title: N01_C06R04 Non-diabetic human islet single cell

description:
N01_C06R04
counts.csv


title: N01_C06R03 Non-diabetic human islet single cell

description:
N01_C06R03
counts.csv


title: N01_C06R02 Non-diabetic human islet single cell

description:
N01_C06R02
counts.csv


title: LKR10Pool12_T1


title: LKR10Pool13_T0


title: LKR10Pool13_T1


title: N01_C06R01 Non-diabetic human islet single cell

description:
N01_C06R01
counts.csv


title: LKR10Pool12_T0


title: N01_C06R10 Non-diabetic human islet single cell

description:
N01_C06R10
counts.csv


title: N01_C05R39 Non-diabetic human islet single cell

description:
N01_C05R39
counts.csv


title: N01_C05R40 Non-diabetic human islet single cell

description:
N01_C05R40
counts.csv


title: LKR10Pool11_T0


title: LKR10Pool10_T0


title: N01_C05R36 Non-diabetic human islet single cell

description:
N01_C05R36
counts.csv


title: N01_C05R37 Non-diabetic human islet single cell

description:
N01_C05R37
counts.csv


title: LKR10Pool11_T1


title: LKR10Pool09_T1


title: N01_C05R35 Non-diabetic human islet single cell

description:
N01_C05R35
counts.csv


title: LKR10Pool09_T0


title: N01_C05R34 Non-diabetic human islet single cell

description:
N01_C05R34
counts.csv


title: LKR10Pool08_T1


title: LKR10Pool08_T0


title: LKR10Pool14_T0


title: N01_C05R32 Non-diabetic human islet single cell

description:
N01_C05R32
counts.csv


title: N01_C05R33 Non-diabetic human islet single cell

description:
N01_C05R33
counts.csv


title: LKR10Pool07_T0


title: N01_C05R38 Non-diabetic human islet single cell

description:
N01_C05R38
counts.csv


title: LKR10Pool07_T1


title: N01_C05R31 Non-diabetic human islet single cell

description:
N01_C05R31
counts.csv


title: N01_C05R28 Non-diabetic human islet single cell

description:
N01_C05R28
counts.csv


title: LKR10Pool06_T0


title: N01_C05R29 Non-diabetic human islet single cell

description:
N01_C05R29
counts.csv


title: LKR10Pool05_T1


title: N01_C05R30 Non-diabetic human islet single cell

description:
N01_C05R30
counts.csv


title: N01_C05R27 Non-diabetic human islet single cell

description:
N01_C05R27
counts.csv


title: LKR10Pool05_T0