title: DNase-seq from kidney (ENCLB218WMT)

description:
https://www.encodeproject.org/experiments/ENCSR939NQH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR939NQH
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB218WMT

value: kidney

value: tissue

value: B6Cast F1 PND25 Female 05 kidney for Altius Stam core

value: unknown

value: 25 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS490MGS at ENCODE; https://www.encodeproject.org/ENCBS490MGS/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: Mint-ChIP-seq from activated CD4 positive, naive alpha-beta T cell (ENCLB132KBD)

status: Public on Nov 04 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR226PSA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on activated CD4 positive, naive alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR226PSA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR186VDY
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB132KBD

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens male adult (42 years) activated CD4 positive, naive alpha-beta T primary cell

tag: antibody

value: primary cell

tag: biosample encode accession

tag: Sex

value: male

tag: dev stage

value: adult

tag: age

value: 42 year

tag: lab

value: Bradley Bernstein, Broad

tag: source

value: John Stamatoyannopoulos

tag: link

value: ENCBS607NQI at ENCODE; https://www.encodeproject.org/ENCBS607NQI/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB951OVV)

description:
https://www.encodeproject.org/experiments/ENCSR012DUX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR012DUX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR803FCO
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB951OVV

source_name: Homo sapiens male adult (30 years) activated CD8-positive, naive alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads

value: 30 year

value: Yijun Ruan, JAX

value: AllCells

tag: treatments

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS777LNY at ENCODE; https://www.encodeproject.org/ENCBS777LNY/

value: Derived from ENCODE donor ENCDO166AGR; https://www.encodeproject.org/ENCDO166AGR/


title: DNase-seq from adrenal gland (ENCLB731LIZ)

description:
https://www.encodeproject.org/experiments/ENCSR923UKN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR923UKN
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB731LIZ

organism: Mus musculus

source_name: Mus musculus strain B6CASTF1/J female (10 days) adrenal gland tissue

value: adrenal gland

value: tissue

tag: description

value: B6Cast F1 PND10 3x Females 05 adrenal gland for Altius Stam core

value: female

value: unknown

value: 10 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS034RCQ at ENCODE; https://www.encodeproject.org/ENCBS034RCQ/


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB787BDI)

description:
https://www.encodeproject.org/experiments/ENCSR012DUX/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR012DUX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR803FCO
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB787BDI

value: primary cell

value: male

value: adult


title: DNase-seq from adrenal gland (ENCLB029JHY)

description:
https://www.encodeproject.org/experiments/ENCSR923UKN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR923UKN
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB029JHY

value: B6Cast F1 PND10 3x Females 06 adrenal gland for Altius Stam core

value: ENCBS563TLK at ENCODE; https://www.encodeproject.org/ENCBS563TLK/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from lung (ENCLB088XOM)

description:
https://www.encodeproject.org/experiments/ENCSR913OPY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR913OPY
assay title: DNase-seq
assembly: mm10
encode release date: 2021-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB088XOM

source_name: Mus musculus strain B6CASTF1/J male (14 days) lung tissue

value: lung

value: B6Cast F1 PND14 3x Males 05 lung for Altius Stam biobank

value: 14 day

value: ENCBS513ZHY at ENCODE; https://www.encodeproject.org/ENCBS513ZHY/


title: Control ChIP-seq from heart right ventricle (ENCLB403ZXM)

description:
https://www.encodeproject.org/experiments/ENCSR145RXI/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on heart right ventricle tissue male adult (73 years).
experiment encode accession: ENCSR145RXI
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB403ZXM
size range: 200-600

source_name: Homo sapiens male adult (73 years) heart right ventricle tissue

value: heart right ventricle

value: tissue

value: 73 year

value: Bradley Bernstein, Broad

value: Shin Lin

tag: health state

value: ischemic (EF 35%, LVEDD 5.7; RV mildly dilated, moderate dysfunction)

value: ENCBS237SHK at ENCODE; https://www.encodeproject.org/ENCBS237SHK/

value: Derived from ENCODE donor ENCDO804CLC; https://www.encodeproject.org/ENCDO804CLC/


title: Brn1 in Q K16Q Rep1 IP

city: Seattle

first: Sarah

middle: G.

last: Swygert

state: WA

address: 1100 Fairview Avenue North MS A1-162

department: Basic Sciences Division

institute: Fred Hutchinson Cancer Research Center

description: Brn1_Q_K16Q_merged_replicates_input_normalized.bw

data_processing:
Reads were aligned to the sacCer3 reference genome using Bowtie2 in very sensitive mode.
Aligned reads were filtered and indexed using SAMtools.
Bam files were converted to bigwig files and IP files were normalized to input
Genome_build: sacCer3 reference genome (release R64-2-1)
Supplementary_files_format_and_content: Processed files are files as they were used in the manuscript, and have IP from both replicates merged and normalized to the merged inputs. These can be viewed using the free software IGB or IGV, or further analysed using available methods.

organism: Saccharomyces cerevisiae

source_name: Q cells

growth_protocol: All strains were generated in prototrophic W303 backgrounds.  Log cells were grown to ~0.6-0.8 OD.  Q cells were purified from 7-day cultures via Percoll density gradient.

extract_protocol:
Approximately 300 OD units of cells were bead-beat until cell walls were disrupted.  Lysates were sonicated to shear chromatin to ~200-400 bp fragments and clarified.  Protein was immuniprecipitated using the indicated antibody.
Tecan Ovation Ultra-Low v2

treatment_protocol: Cells were fixed in formaldehyde for 20 minutes

tag: genotype

value: MATa RAD5+ ura3-1 hht1-hhf1::Nat hht2-hhf2::Hyg trp1-1::pRS404-HHT2-hhf2-K16Q Brn1-2L-3FLAG::KanMX

tag: strain

tag: chip antibody

value: FLAG M2 (Sigma-Aldrich #F1804)


title: DNase-seq from lung (ENCLB499BOR)

description:
https://www.encodeproject.org/experiments/ENCSR913OPY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR913OPY
assay title: DNase-seq
assembly: mm10
encode release date: 2021-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB499BOR

value: B6Cast F1 PND14 Male 06 lung for Altius Stam biobank

value: male

value: unknown

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS297TRH at ENCODE; https://www.encodeproject.org/ENCBS297TRH/


title: Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCLB388RYH)

description:
https://www.encodeproject.org/experiments/ENCSR144ABJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on CD8-positive naive resting alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR144ABJ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR070IHF
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB388RYH

source_name: Homo sapiens male adult (42 years) CD8-positive naive resting alpha-beta T primary cell

value: primary cell

value: adult

value: 42 year

value: John Stamatoyannopoulos

value: ENCBS859TOE at ENCODE; https://www.encodeproject.org/ENCBS859TOE/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: DNase-seq from cerebellum (ENCLB303FIZ)

description:
https://www.encodeproject.org/experiments/ENCSR913LCG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR913LCG
assay title: DNase-seq
assembly: mm10
encode release date: 2021-08-24
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB303FIZ

source_name: Mus musculus strain B6CASTF1/J male (36 days) cerebellum tissue

value: cerebellum

value: tissue

value: B6Cast F1 PND36 Male 06 cerebellum for Altius Stam core

value: 36 day

value: ENCBS544PCX at ENCODE; https://www.encodeproject.org/ENCBS544PCX/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: Mint-ChIP-seq from neural crest cell (ENCLB599BVJ)

description:
https://www.encodeproject.org/experiments/ENCSR219DIX/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on neural crest cell
experiment encode accession: ENCSR219DIX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR713YQD
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB599BVJ

source_name: Homo sapiens female embryo (5 days) neural crest in vitro differentiated cells originated from neural crest cell

value: neural crest cell

value: in vitro differentiated cells

value: WA09 derived neural crest cells

value: female

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein, Broad

value: SESCC

value: ENCBS417JEU at ENCODE; https://www.encodeproject.org/ENCBS417JEU/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from neural crest cell (ENCLB797ZVG)

description:
https://www.encodeproject.org/experiments/ENCSR012MIG/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on neural crest cell
experiment encode accession: ENCSR012MIG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR713YQD
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB797ZVG


title: Control ChIP-seq from heart right ventricle (ENCLB629SKK)

description:
https://www.encodeproject.org/experiments/ENCSR145RXI/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on heart right ventricle tissue male adult (73 years).
experiment encode accession: ENCSR145RXI
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB629SKK
size range: 200-600

value: heart right ventricle

value: male

value: adult

value: 73 year

value: Shin Lin

value: ischemic (EF 35%, LVEDD 5.7; RV mildly dilated, moderate dysfunction)

value: ENCBS237SHK at ENCODE; https://www.encodeproject.org/ENCBS237SHK/

value: Derived from ENCODE donor ENCDO804CLC; https://www.encodeproject.org/ENCDO804CLC/


title: Brn1 in Q K16Q Rep2 Input

value: MATa RAD5+ ura3-1 hht1-hhf1::Nat hht2-hhf2::Hyg trp1-1::pRS404-HHT2-hhf2-K16Q Brn1-2L-3FLAG::KanMX

value: FLAG M2 (Sigma-Aldrich #F1804)


title: Mint-ChIP-seq from activated CD4 positive, naive alpha-beta T cell (ENCLB501AWG)

description:
https://www.encodeproject.org/experiments/ENCSR226PSA/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on activated CD4 positive, naive alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR226PSA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR186VDY
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB501AWG

value: primary cell

value: 42 year

value: John Stamatoyannopoulos

value: ENCBS607NQI at ENCODE; https://www.encodeproject.org/ENCBS607NQI/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: Brn1 in Q HHF2 Rep2 IP

description: Brn1_Q_HHF2_merged_replicates_input_normalized.bw

value: MATa RAD5+ ura3-1 hht1-hhf1::Nat hht2-hhf2::Hyg trp1-1::pRS404-HHT2-HHF2 Brn1-2L-3FLAG::KanMX


title: Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCLB246CIE)

description:
https://www.encodeproject.org/experiments/ENCSR144ABJ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on CD8-positive naive resting alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR144ABJ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR070IHF
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB246CIE

value: Bradley Bernstein, Broad

value: ENCBS859TOE at ENCODE; https://www.encodeproject.org/ENCBS859TOE/


title: Mint-ChIP-seq from neural crest cell (ENCLB407NBL)

description:
https://www.encodeproject.org/experiments/ENCSR219DIX/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on neural crest cell
experiment encode accession: ENCSR219DIX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR713YQD
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB407NBL

value: neural crest cell

value: in vitro differentiated cells

value: WA09 derived neural crest cells

value: female

value: healthy

value: embryonic

value: 5 day

value: SESCC

value: ENCBS417JEU at ENCODE; https://www.encodeproject.org/ENCBS417JEU/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from activated CD4 positive, naive alpha-beta T cell (ENCLB954QOG)

description:
https://www.encodeproject.org/experiments/ENCSR030MGY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on activated CD4 positive, naive alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR030MGY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR186VDY
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB954QOG

value: primary cell

value: male

value: adult

value: 42 year


title: DNase-seq from adrenal gland (ENCLB031XQM)

description:
https://www.encodeproject.org/experiments/ENCSR840HMW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR840HMW
assay title: DNase-seq
assembly: mm10
encode release date: 2021-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB031XQM

source_name: Mus musculus strain B6CASTF1/J female (4 days) adrenal gland tissue

value: adrenal gland

value: tissue

value: B6Cast F1 PND4 3x Females 06 adrenal gland for Altius Stam core

value: unknown

value: 4 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS071VBH at ENCODE; https://www.encodeproject.org/ENCBS071VBH/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: Brn1 in Q HHF2 Rep1 IP

value: MATa RAD5+ ura3-1 hht1-hhf1::Nat hht2-hhf2::Hyg trp1-1::pRS404-HHT2-HHF2 Brn1-2L-3FLAG::KanMX

value: FLAG M2 (Sigma-Aldrich #F1804)


title: Mint-ChIP-seq from activated T-cell (ENCLB996SLI)

description:
https://www.encodeproject.org/experiments/ENCSR137UJW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on activated T-cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours..
experiment encode accession: ENCSR137UJW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR975DSD
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB996SLI

source_name: Homo sapiens male adult (42 years) activated T-cell primary cell

value: activated T-cell

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS351GLT at ENCODE; https://www.encodeproject.org/ENCBS351GLT/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: DNase-seq from left cerebral cortex (ENCLB244IKU)

description:
https://www.encodeproject.org/experiments/ENCSR839DGG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR839DGG
assay title: DNase-seq
assembly: mm10
encode release date: 2021-09-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB244IKU

source_name: Mus musculus strain B6CASTF1/J male (14 days) left cerebral cortex tissue

value: left cerebral cortex

value: B6Cast F1 PND14 3x Males 05 left cerebral cortex for Altius Stam biobank

value: male

value: 14 day

value: ENCBS336BPS at ENCODE; https://www.encodeproject.org/ENCBS336BPS/


title: DNase-seq from left cerebral cortex (ENCLB399DSZ)

description:
https://www.encodeproject.org/experiments/ENCSR839DGG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR839DGG
assay title: DNase-seq
assembly: mm10
encode release date: 2021-09-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB399DSZ

value: tissue

value: B6Cast F1 PND14 Male 06 left cerebral cortex for Altius Stam biobank

value: unknown

value: ENCBS795RWI at ENCODE; https://www.encodeproject.org/ENCBS795RWI/


title: Mint-ChIP-seq from neural crest cell (ENCLB146DMO)

description:
https://www.encodeproject.org/experiments/ENCSR219DIX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on neural crest cell
experiment encode accession: ENCSR219DIX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR713YQD
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB146DMO
fragmentation methods: none

value: neural crest cell

value: in vitro differentiated cells

value: WA09 derived neural crest cells

value: female

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein, Broad

value: SESCC

value: ENCBS200JOD at ENCODE; https://www.encodeproject.org/ENCBS200JOD/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB808AIQ)

description:
https://www.encodeproject.org/experiments/ENCSR152MAZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on middle frontal area 46 tissue female adult (86 years) with Alzheimer's disease.
experiment encode accession: ENCSR152MAZ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR564VBC
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB808AIQ
size range: 200-600

source_name: Homo sapiens female adult (86 years) with Alzheimer's disease; middle frontal area 46 tissue

value: middle frontal area 46

value: adult

value: 86 year

value: Rush University

value: ENCBS797LUE at ENCODE; https://www.encodeproject.org/ENCBS797LUE/

value: Derived from ENCODE donor ENCDO997SGX; https://www.encodeproject.org/ENCDO997SGX/


title: Mint-ChIP-seq from activated T-cell (ENCLB258ULM)

description:
https://www.encodeproject.org/experiments/ENCSR137UJW/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on activated T-cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours..
experiment encode accession: ENCSR137UJW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR975DSD
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB258ULM

value: activated T-cell

value: primary cell

value: male

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS351GLT at ENCODE; https://www.encodeproject.org/ENCBS351GLT/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: Brn1 in Q K16Q Rep2 IP

description: Brn1_Q_K16Q_merged_replicates_input_normalized.bw

value: MATa RAD5+ ura3-1 hht1-hhf1::Nat hht2-hhf2::Hyg trp1-1::pRS404-HHT2-hhf2-K16Q Brn1-2L-3FLAG::KanMX

value: FLAG M2 (Sigma-Aldrich #F1804)


title: Brn1 in Q HHF2 Rep2 Input

value: MATa RAD5+ ura3-1 hht1-hhf1::Nat hht2-hhf2::Hyg trp1-1::pRS404-HHT2-HHF2 Brn1-2L-3FLAG::KanMX


title: Mint-ChIP-seq from IgD-negative memory B cell (ENCLB280TZM)

description:
https://www.encodeproject.org/experiments/ENCSR009ZRH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq of IgD-negative memory B cell originated from IgD-negative memory B cell.
experiment encode accession: ENCSR009ZRH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR354FME
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB280TZM
fragmentation methods: none

source_name: Homo sapiens IgD-negative memory B primary cell with multiple sclerosis, preserved by cryopreservation

value: IgD-negative memory B cell

value: B memory CD3- CD14- CD19+ CD27+ IgD-

value: not collected

value: multiple sclerosis

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS091EUT at ENCODE; https://www.encodeproject.org/ENCBS091EUT/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: Mint-ChIP-seq from T-helper 1 cell (ENCLB396SZC)

description:
https://www.encodeproject.org/experiments/ENCSR005ZRX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on T-helper 1 cell male adult (35 years) treated with 1 ?g/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta
experiment encode accession: ENCSR005ZRX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR352UAU
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB396SZC

source_name: Homo sapiens male adult (35 years) T-helper 1 primary cell treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta

value: T-helper 1 cell

value: primary cell

value: male

value: adult

value: 35 year

value: Yijun Ruan, JAX

value: treatment_term_name:Interleukin-4 antibody; treatment_type:antibody; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; treatment_term_id:UniProtKB:P29460; treatment_term_name:Interleukin-12 subunit beta; treatment_type:protein;

value: ENCBS111UJE at ENCODE; https://www.encodeproject.org/ENCBS111UJE/

value: Derived from ENCODE donor ENCDO374BBL; https://www.encodeproject.org/ENCDO374BBL/


title: DNase-seq from adrenal gland (ENCLB722CBC)

description:
https://www.encodeproject.org/experiments/ENCSR831ITR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR831ITR
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB722CBC
instrument models: Illumina NovaSeq 6000,Illumina HiSeq 4000

source_name: Mus musculus strain B6CASTF1/J male (10 days) adrenal gland tissue

value: adrenal gland

value: tissue

value: B6Cast F1 PND10 3x Males 06 adrenal gland for Altius Stam core

value: 10 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS971MVA at ENCODE; https://www.encodeproject.org/ENCBS971MVA/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: Mint-ChIP-seq from T-helper 1 cell (ENCLB646XRV)

description:
https://www.encodeproject.org/experiments/ENCSR005ZRX/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on T-helper 1 cell male adult (35 years) treated with 1 ?g/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta
experiment encode accession: ENCSR005ZRX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR352UAU
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB646XRV

value: T-helper 1 cell

value: AllCells


title: Brn1 in Q K16Q Rep1 Input

value: MATa RAD5+ ura3-1 hht1-hhf1::Nat hht2-hhf2::Hyg trp1-1::pRS404-HHT2-hhf2-K16Q Brn1-2L-3FLAG::KanMX

value: FLAG M2 (Sigma-Aldrich #F1804)


title: Mint-ChIP-seq from neural crest cell (ENCLB721UNL)

description:
https://www.encodeproject.org/experiments/ENCSR219DIX/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on neural crest cell
experiment encode accession: ENCSR219DIX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR713YQD
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB721UNL
fragmentation methods: none

value: neural crest cell

value: in vitro differentiated cells

value: WA09 derived neural crest cells

value: female

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein, Broad

value: SESCC

value: ENCBS200JOD at ENCODE; https://www.encodeproject.org/ENCBS200JOD/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Brn1 in Q HHF2 Rep1 Input

description: Brn1_Q_HHF2_merged_replicates_input_normalized.bw

value: MATa RAD5+ ura3-1 hht1-hhf1::Nat hht2-hhf2::Hyg trp1-1::pRS404-HHT2-HHF2 Brn1-2L-3FLAG::KanMX


title: Histone ChIP-seq from heart left ventricle (ENCLB179CNO)

description:
https://www.encodeproject.org/experiments/ENCSR135GZX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on heart left ventricle tissue male adult (43 years).
experiment encode accession: ENCSR135GZX
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR109IWL
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB179CNO
size range: 200-600

source_name: Homo sapiens male adult (43 years) heart left ventricle tissue

value: heart left ventricle

value: tissue

value: male

value: adult

value: 43 year

value: Shin Lin

value: nonischemic (EF 23%, LVEDD 6.1; RV moderate dilation, normal function)

value: ENCBS552CFU at ENCODE; https://www.encodeproject.org/ENCBS552CFU/

value: Derived from ENCODE donor ENCDO967KID; https://www.encodeproject.org/ENCDO967KID/


title: Histone ChIP-seq from heart left ventricle (ENCLB846BDF)

description:
https://www.encodeproject.org/experiments/ENCSR135GZX/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on heart left ventricle tissue male adult (43 years).
experiment encode accession: ENCSR135GZX
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR109IWL
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB846BDF
size range: 200-600


title: Brn1 in Q 5toA Rep2 IP

description: Brn1_Q_5toA_merged_replicates_input_normalized.bw

value: MATa RAD5+ ura3-1 hht1-hhf1::Nat hht2-hhf2::Hyg trp1-1::pRS404-HHT2-hhf2-K16A,R17A,H18A,R19A,K20A Brn1-2L-3FLAG::KanMX

value: FLAG M2 (Sigma-Aldrich #F1804)


title: DNase-seq from adrenal gland (ENCLB650CQV)

description:
https://www.encodeproject.org/experiments/ENCSR831ITR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR831ITR
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB650CQV

value: adrenal gland

value: B6Cast F1 PND10 3x Males 05 adrenal gland for Altius Stam core

value: unknown

value: 10 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS159AUA at ENCODE; https://www.encodeproject.org/ENCBS159AUA/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB692SHK)

description:
https://www.encodeproject.org/experiments/ENCSR135AYC/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with Alzheimer's disease.
experiment encode accession: ENCSR135AYC
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR237ZMF
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB692SHK
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) with Alzheimer's disease; middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: female

value: 90 or above year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS547CKT at ENCODE; https://www.encodeproject.org/ENCBS547CKT/

value: Derived from ENCODE donor ENCDO637GUS; https://www.encodeproject.org/ENCDO637GUS/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB396YKC)

description:
https://www.encodeproject.org/experiments/ENCSR135AYC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with Alzheimer's disease.
experiment encode accession: ENCSR135AYC
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR237ZMF
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB396YKC
size range: 200-600

value: adult


title: Brn1 in Q 5toA Rep1 IP

value: MATa RAD5+ ura3-1 hht1-hhf1::Nat hht2-hhf2::Hyg trp1-1::pRS404-HHT2-hhf2-K16A,R17A,H18A,R19A,K20A Brn1-2L-3FLAG::KanMX

value: FLAG M2 (Sigma-Aldrich #F1804)


title: Mint-ChIP-seq from T-helper 1 cell (ENCLB281QFK)

description:
https://www.encodeproject.org/experiments/ENCSR005QYU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on T-helper 1 cell male adult (35 years) treated with 1 ?g/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta
experiment encode accession: ENCSR005QYU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR352UAU
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB281QFK

value: T-helper 1 cell

value: primary cell

value: male

value: 35 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_name:Interleukin-4 antibody; treatment_type:antibody; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; treatment_term_id:UniProtKB:P29460; treatment_term_name:Interleukin-12 subunit beta; treatment_type:protein;

value: ENCBS111UJE at ENCODE; https://www.encodeproject.org/ENCBS111UJE/

value: Derived from ENCODE donor ENCDO374BBL; https://www.encodeproject.org/ENCDO374BBL/


title: DNase-seq from right cerebral cortex (ENCLB501FRI)

description:
https://www.encodeproject.org/experiments/ENCSR824YVS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR824YVS
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB501FRI

source_name: Mus musculus strain B6CASTF1/J female (10 days) right cerebral cortex tissue

value: right cerebral cortex

value: tissue

value: B6Cast F1 PND10 Female 06 right cerebral cortex for Altius Stam biobank

value: female

value: unknown

value: 10 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS870YKW at ENCODE; https://www.encodeproject.org/ENCBS870YKW/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: Mint-ChIP-seq from T-helper 1 cell (ENCLB106JHS)

description:
https://www.encodeproject.org/experiments/ENCSR005QYU/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on T-helper 1 cell male adult (35 years) treated with 1 ?g/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta
experiment encode accession: ENCSR005QYU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR352UAU
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB106JHS

value: T-helper 1 cell

value: primary cell

value: male

value: adult


title: Brn1 in Q 5toA Rep2 Input

value: MATa RAD5+ ura3-1 hht1-hhf1::Nat hht2-hhf2::Hyg trp1-1::pRS404-HHT2-hhf2-K16A,R17A,H18A,R19A,K20A Brn1-2L-3FLAG::KanMX

value: FLAG M2 (Sigma-Aldrich #F1804)


title: DNase-seq from right cerebral cortex (ENCLB793JQX)

description:
https://www.encodeproject.org/experiments/ENCSR824YVS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR824YVS
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB793JQX

value: B6Cast F1 PND10 Female 05 right cerebral cortex for Altius Stam biobank

value: ENCBS151MWD at ENCODE; https://www.encodeproject.org/ENCBS151MWD/


title: Mint-ChIP-seq from IgD-negative memory B cell (ENCLB148NLC)

description:
https://www.encodeproject.org/experiments/ENCSR009ZRH/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq of IgD-negative memory B cell originated from IgD-negative memory B cell.
experiment encode accession: ENCSR009ZRH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR354FME
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB148NLC
fragmentation methods: none

value: IgD-negative memory B cell

value: B memory CD3- CD14- CD19+ CD27+ IgD-

value: not collected

value: multiple sclerosis

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS091EUT at ENCODE; https://www.encodeproject.org/ENCBS091EUT/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: DNase-seq from adrenal gland (ENCLB421CZO)

description:
https://www.encodeproject.org/experiments/ENCSR837TJD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR837TJD
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB421CZO
instrument models: Illumina NovaSeq 6000,Illumina HiSeq 4000

source_name: Mus musculus strain B6CASTF1/J female (14 days) adrenal gland tissue

value: adrenal gland

value: tissue

value: B6Cast F1 PND14 3x Females 06 adrenal gland for Altius Stam core

value: female

value: unknown

value: 14 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS713MNY at ENCODE; https://www.encodeproject.org/ENCBS713MNY/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: Histone ChIP-seq from pancreas (ENCLB046NUW)

description:
https://www.encodeproject.org/experiments/ENCSR133RZO/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on pancreas tissue female child (16 years)
experiment encode accession: ENCSR133RZO
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR618UQQ
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB046NUW
size range: 200-600

source_name: Homo sapiens female child (16 years) pancreas tissue

value: pancreas

value: child

value: 16 year

value: Shin Lin

value: DM:no; HTN:no; CAD:no

value: ENCBS022HXP at ENCODE; https://www.encodeproject.org/ENCBS022HXP/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: Histone ChIP-seq from pancreas (ENCLB969JXF)

description:
https://www.encodeproject.org/experiments/ENCSR133RZO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on pancreas tissue female child (16 years)
experiment encode accession: ENCSR133RZO
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR618UQQ
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB969JXF
size range: 200-600

value: Bradley Bernstein, Broad


title: Histone ChIP-seq from middle frontal area 46 (ENCLB344JZP)

description:
https://www.encodeproject.org/experiments/ENCSR004YQD/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on middle frontal area 46 tissue female adult (87 years)
experiment encode accession: ENCSR004YQD
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR293ZPH
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB344JZP
size range: 200-600

source_name: Homo sapiens female adult (87 years) middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: adult

value: 87 year

value: Rush University

value: ENCBS733LER at ENCODE; https://www.encodeproject.org/ENCBS733LER/

value: Derived from ENCODE donor ENCDO640RUC; https://www.encodeproject.org/ENCDO640RUC/


title: DNase-seq from heart (ENCLB661UDN)

description:
https://www.encodeproject.org/experiments/ENCSR804CGV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR804CGV
assay title: DNase-seq
assembly: mm10
encode release date: 2021-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB661UDN

source_name: Mus musculus strain B6CASTF1/J female (2 months) heart tissue

value: heart

value: B6Cast F1 PND 2 months Female 05 heart for Altius Stam biobank

value: female

value: unknown

value: 2 month

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS378WTF at ENCODE; https://www.encodeproject.org/ENCBS378WTF/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB239VZR)

description:
https://www.encodeproject.org/experiments/ENCSR004YQD/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on middle frontal area 46 tissue female adult (87 years)
experiment encode accession: ENCSR004YQD
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR293ZPH
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB239VZR
size range: 200-600


title: Histone ChIP-seq from heart right ventricle (ENCLB921XOY)

description:
https://www.encodeproject.org/experiments/ENCSR216YPQ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on heart right ventricle tissue male adult (73 years).
experiment encode accession: ENCSR216YPQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR145RXI
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB921XOY
size range: 200-600

source_name: Homo sapiens male adult (73 years) heart right ventricle tissue

value: heart right ventricle

value: male

value: 73 year

value: Shin Lin

value: ischemic (EF 35%, LVEDD 5.7; RV mildly dilated, moderate dysfunction)

value: ENCBS237SHK at ENCODE; https://www.encodeproject.org/ENCBS237SHK/

value: Derived from ENCODE donor ENCDO804CLC; https://www.encodeproject.org/ENCDO804CLC/


title: DNase-seq from heart (ENCLB426MEW)

description:
https://www.encodeproject.org/experiments/ENCSR804CGV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR804CGV
assay title: DNase-seq
assembly: mm10
encode release date: 2021-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB426MEW

value: tissue

value: B6Cast F1 PND 2 months Female 06 heart for Altius Stam biobank

value: ENCBS837PJA at ENCODE; https://www.encodeproject.org/ENCBS837PJA/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from kidney (ENCLB765YEH)

description:
https://www.encodeproject.org/experiments/ENCSR664IBN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR664IBN
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB765YEH

source_name: Mus musculus strain B6CASTF1/J male (2 months) kidney tissue

value: kidney

value: B6Cast F1 PND 2 months Male 06 kidney for Altius Stam core

value: ENCBS815WLN at ENCODE; https://www.encodeproject.org/ENCBS815WLN/


title: Histone ChIP-seq from heart right ventricle (ENCLB452QQX)

description:
https://www.encodeproject.org/experiments/ENCSR216YPQ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on heart right ventricle tissue male adult (73 years).
experiment encode accession: ENCSR216YPQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR145RXI
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB452QQX
size range: 200-600

value: adult

value: Bradley Bernstein, Broad


title: polyA plus RNA-seq from inflammation-experienced regulatory T-cells (ENCLB182YPW)

description:
https://www.encodeproject.org/experiments/ENCSR694KXY/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR694KXY
assay title: polyA plus RNA-seq
assembly: mm10
encode release date: 2017-03-07
lab: Christina Leslie, MSKCC
library encode accession: ENCLB182YPW
fragmentation methods: shearing (Covaris generic)
size range: 100-300

library_source: transcriptomic

molecule: total RNA

source_name: Mus musculus (12 weeks) inflammation-experienced regulatory T-cells primary cell originated from activated regulatory T cell

value: primary cell

value: not collected

value: unknown

value: 12 week

value: Christina Leslie, MSKCC

value: Christina Leslie

value: ENCBS550RYN at ENCODE; https://www.encodeproject.org/ENCBS550RYN/

value: Derived from ENCODE donor ENCDO200AUG; https://www.encodeproject.org/ENCDO200AUG/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB667WTC)

description:
https://www.encodeproject.org/experiments/ENCSR004HIE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on middle frontal area 46 tissue female adult (90 or above years).
experiment encode accession: ENCSR004HIE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR634QZP
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB667WTC
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: female

value: 90 or above year

value: Rush University

value: ENCBS868XXM at ENCODE; https://www.encodeproject.org/ENCBS868XXM/

value: Derived from ENCODE donor ENCDO101GPB; https://www.encodeproject.org/ENCDO101GPB/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB920FJR)

description:
https://www.encodeproject.org/experiments/ENCSR004HIE/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on middle frontal area 46 tissue female adult (90 or above years).
experiment encode accession: ENCSR004HIE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR634QZP
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB920FJR
size range: 200-600

value: adult


title: polyA plus RNA-seq from inflammation-experienced regulatory T-cells (ENCLB103QKF)

description:
https://www.encodeproject.org/experiments/ENCSR694KXY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR694KXY
assay title: polyA plus RNA-seq
assembly: mm10
encode release date: 2017-03-07
lab: Christina Leslie, MSKCC
library encode accession: ENCLB103QKF
fragmentation methods: shearing (Covaris generic)
size range: 100-300


title: DNase-seq from kidney (ENCLB978EAK)

description:
https://www.encodeproject.org/experiments/ENCSR664IBN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR664IBN
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB978EAK

value: kidney

value: B6Cast F1 PND 2 months Male 05 kidney for Altius Stam core

value: male

value: 2 month

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS554BLP at ENCODE; https://www.encodeproject.org/ENCBS554BLP/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB996DMW)

description:
https://www.encodeproject.org/experiments/ENCSR215QQE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with Cognitive impairment.
experiment encode accession: ENCSR215QQE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR427DIF
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB996DMW
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) with Cognitive impairment; middle frontal area 46 tissue

value: Bradley Bernstein, Broad

value: ENCBS296QVB at ENCODE; https://www.encodeproject.org/ENCBS296QVB/

value: Derived from ENCODE donor ENCDO448YMQ; https://www.encodeproject.org/ENCDO448YMQ/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB240PAI)

description:
https://www.encodeproject.org/experiments/ENCSR215QQE/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with Cognitive impairment.
experiment encode accession: ENCSR215QQE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR427DIF
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB240PAI
size range: 200-600

value: middle frontal area 46

value: tissue

value: female


title: DNase-seq from thymus (ENCLB175IUB)

description:
https://www.encodeproject.org/experiments/ENCSR730MYK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR730MYK
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-07
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB175IUB

source_name: Mus musculus strain B6CASTF1/J female (4 days) thymus tissue

value: thymus

value: B6Cast F1 PND4 Female 05 thymus for Altius Stam biobank

value: unknown

value: 4 day

value: ENCBS337QCE at ENCODE; https://www.encodeproject.org/ENCBS337QCE/


title: microRNA-seq from heart right ventricle (ENCLB810WOQ)

description:
https://www.encodeproject.org/experiments/ENCSR004ACG/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation human tissue W73 heart right ventricle microRNA-seq from Mortazavi
experiment encode accession: ENCSR004ACG
assay title: microRNA-seq
assembly: GRCh38
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB810WOQ
size range: <30

source_name: Homo sapiens female adult (59 years) heart right ventricle tissue, preserved by flash-freezing

value: heart right ventricle

value: adult

value: 59 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: DM:yes; HTN:yes; CAD:no

value: ENCBS789UUH at ENCODE; https://www.encodeproject.org/ENCBS789UUH/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Mint-ChIP-seq from activated T-helper 2 cell (ENCLB949YGI)

description:
https://www.encodeproject.org/experiments/ENCSR002RFV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on activated T-helper 2 cell male adult (35 years) treated with 5 ?g/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 , anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR002RFV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR193QAG
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB949YGI

source_name: Homo sapiens male adult (35 years) activated T-helper 2 primary cell treated with 5 μg/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 , anti-CD3 and anti-CD28 coated beads

value: activated T-helper 2 cell

value: primary cell

value: male

value: 35 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_name:Interferon-gamma antibody; treatment_type:antibody; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS271FSH at ENCODE; https://www.encodeproject.org/ENCBS271FSH/

value: Derived from ENCODE donor ENCDO374BBL; https://www.encodeproject.org/ENCDO374BBL/


title: Histone ChIP-seq from macrophage (ENCLB297IEU)

description:
https://www.encodeproject.org/experiments/ENCSR933GNW/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on fragement DNA which is part of BMDM cell with no stimulation
experiment encode accession: ENCSR933GNW
assay title: Histone ChIP-seq
assembly: mm10
possible controls: ENCSR601NNP
encode release date: 2021-07-21
lab: Alexander Hoffmann, UCLA
library encode accession: ENCLB297IEU
size range: 350-480
nucleic acid starting quantity: 10
nucleic acid starting quantity units: ng

source_name: Mus musculus strain C57BL/6J macrophage primary cell

value: macrophage

value: not collected

value: unknown

value: Alexander Hoffmann, UCLA

value: Alexander Hoffmann

value: ENCBS745MVC at ENCODE; https://www.encodeproject.org/ENCBS745MVC/

value: Derived from ENCODE donor ENCDO072AAA; https://www.encodeproject.org/ENCDO072AAA/


title: Histone ChIP-seq from macrophage (ENCLB927ZOS)

description:
https://www.encodeproject.org/experiments/ENCSR933GNW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on fragement DNA which is part of BMDM cell with no stimulation
experiment encode accession: ENCSR933GNW
assay title: Histone ChIP-seq
assembly: mm10
possible controls: ENCSR601NNP
encode release date: 2021-07-21
lab: Alexander Hoffmann, UCLA
library encode accession: ENCLB927ZOS
size range: 350-480
nucleic acid starting quantity: 10
nucleic acid starting quantity units: ng

value: ENCBS555RDM at ENCODE; https://www.encodeproject.org/ENCBS555RDM/


title: DNase-seq from thymus (ENCLB405QCN)

description:
https://www.encodeproject.org/experiments/ENCSR730MYK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR730MYK
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-07
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB405QCN

value: thymus

value: tissue

value: B6Cast F1 PND4 Female 06 thymus for Altius Stam biobank

value: female

value: 4 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS757POS at ENCODE; https://www.encodeproject.org/ENCBS757POS/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: Mint-ChIP-seq from mesothelial cell of epicardium (ENCLB314UCD)

description:
https://www.encodeproject.org/experiments/ENCSR213GNK/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on mesothelial cell of epicardium
experiment encode accession: ENCSR213GNK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR268SLH
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB314UCD

source_name: Homo sapiens female embryo (5 days) mesothelial of epicardium in vitro differentiated cells

value: mesothelial cell of epicardium

value: in vitro differentiated cells

value: WA09 derived epicardium (mesothelium)

value: embryonic

value: 5 day

value: Bradley Bernstein, Broad

value: SESCC

value: healthy

value: ENCBS048EDA at ENCODE; https://www.encodeproject.org/ENCBS048EDA/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Brn1 in Q 5toA Rep1 Input

description: Brn1_Q_5toA_merged_replicates_input_normalized.bw

source_name: Q cells

value: MATa RAD5+ ura3-1 hht1-hhf1::Nat hht2-hhf2::Hyg trp1-1::pRS404-HHT2-hhf2-K16A,R17A,H18A,R19A,K20A Brn1-2L-3FLAG::KanMX

value: FLAG M2 (Sigma-Aldrich #F1804)


title: Mint-ChIP-seq from mesothelial cell of epicardium (ENCLB844MBV)

description:
https://www.encodeproject.org/experiments/ENCSR213GNK/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on mesothelial cell of epicardium
experiment encode accession: ENCSR213GNK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR268SLH
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB844MBV

value: female


title: DNase-seq from left cerebral cortex (ENCLB946KIM)

description:
https://www.encodeproject.org/experiments/ENCSR883RWB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR883RWB
assay title: DNase-seq
assembly: mm10
encode release date: 2021-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB946KIM

source_name: Mus musculus strain B6CASTF1/J female (2 months) left cerebral cortex tissue

value: left cerebral cortex

value: tissue

value: B6Cast F1 PND 2 months Female 05 left cerebral cortex for Altius Stam biobank

value: unknown

value: 2 month

value: Barbara Wold, Caltech

value: ENCBS813OGO at ENCODE; https://www.encodeproject.org/ENCBS813OGO/


title: DNase-seq from kidney (ENCLB135ZBR)

description:
https://www.encodeproject.org/experiments/ENCSR984XSP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR984XSP
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB135ZBR

source_name: Mus musculus strain B6CASTF1/J male (10 days) kidney tissue

value: kidney

value: B6Cast F1 PND10 3x Males 05 kidney for Altius Stam core

value: male

value: 10 day

value: The Jackson Laboratory

value: ENCBS619MUG at ENCODE; https://www.encodeproject.org/ENCBS619MUG/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: Histone ChIP-seq from macrophage (ENCLB738ZPX)

description:
https://www.encodeproject.org/experiments/ENCSR916IRY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on fragement DNA which is part of BMDM cell with no stimulation
experiment encode accession: ENCSR916IRY
assay title: Histone ChIP-seq
assembly: mm10
possible controls: ENCSR601NNP
encode release date: 2021-07-21
lab: Alexander Hoffmann, UCLA
library encode accession: ENCLB738ZPX
size range: 350-480
nucleic acid starting quantity: 10
nucleic acid starting quantity units: ng

value: macrophage

value: primary cell

value: not collected

value: Alexander Hoffmann, UCLA

value: Alexander Hoffmann

value: ENCBS130WCG at ENCODE; https://www.encodeproject.org/ENCBS130WCG/

value: Derived from ENCODE donor ENCDO072AAA; https://www.encodeproject.org/ENCDO072AAA/


title: Histone ChIP-seq from macrophage (ENCLB130GAQ)

description:
https://www.encodeproject.org/experiments/ENCSR916IRY/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on fragement DNA which is part of BMDM cell with no stimulation
experiment encode accession: ENCSR916IRY
assay title: Histone ChIP-seq
assembly: mm10
possible controls: ENCSR601NNP
encode release date: 2021-07-21
lab: Alexander Hoffmann, UCLA
library encode accession: ENCLB130GAQ
size range: 350-480
nucleic acid starting quantity: 10
nucleic acid starting quantity units: ng

value: unknown

value: ENCBS756KGZ at ENCODE; https://www.encodeproject.org/ENCBS756KGZ/


title: Histone ChIP-seq from heart right ventricle (ENCLB018UDV)

description:
https://www.encodeproject.org/experiments/ENCSR001ZXO/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on heart right ventricle tissue male adult (69 years).
experiment encode accession: ENCSR001ZXO
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR481SJM
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB018UDV
size range: 200-600

source_name: Homo sapiens male adult (69 years) heart right ventricle tissue

value: heart right ventricle

value: tissue

value: ischemic (EF 25% LVEDD 5.7; RV mildly dilated, moderate dysfunction)

value: adult

value: 69 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: ENCBS926ALQ at ENCODE; https://www.encodeproject.org/ENCBS926ALQ/

value: Derived from ENCODE donor ENCDO477WED; https://www.encodeproject.org/ENCDO477WED/


title: Mint-ChIP-seq from mesothelial cell of epicardium (ENCLB384MJS)

description:
https://www.encodeproject.org/experiments/ENCSR213GNK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on mesothelial cell of epicardium
experiment encode accession: ENCSR213GNK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR268SLH
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB384MJS

source_name: Homo sapiens female embryo (5 days) mesothelial of epicardium in vitro differentiated cells originated from mesothelial cell of epicardium

value: mesothelial cell of epicardium

value: in vitro differentiated cells

value: WA09 derived epicardium (mesothelium)

value: female

value: healthy

value: embryonic

value: 5 day

value: SESCC

value: ENCBS924VAR at ENCODE; https://www.encodeproject.org/ENCBS924VAR/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Histone ChIP-seq from heart right ventricle (ENCLB825QDI)

description:
https://www.encodeproject.org/experiments/ENCSR001ZXO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on heart right ventricle tissue male adult (69 years).
experiment encode accession: ENCSR001ZXO
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR481SJM
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB825QDI
size range: 200-600

value: heart right ventricle

value: tissue

value: male

value: ischemic (EF 25% LVEDD 5.7; RV mildly dilated, moderate dysfunction)


title: polyA plus RNA-seq from inflammation-experienced regulatory T-cells (ENCLB836VDZ)

description:
https://www.encodeproject.org/experiments/ENCSR694KXY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR694KXY
assay title: polyA plus RNA-seq
assembly: mm10
encode release date: 2017-03-07
lab: Christina Leslie, MSKCC
library encode accession: ENCLB836VDZ
fragmentation methods: shearing (Covaris generic)
size range: 100-300

value: primary cell

value: not collected

value: unknown

value: 12 week

value: Christina Leslie, MSKCC

value: Christina Leslie

value: ENCBS550RYN at ENCODE; https://www.encodeproject.org/ENCBS550RYN/

value: Derived from ENCODE donor ENCDO200AUG; https://www.encodeproject.org/ENCDO200AUG/


title: Histone ChIP-seq from mucosa of descending colon (ENCLB071DDE)

description:
https://www.encodeproject.org/experiments/ENCSR001UVQ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on mucosa of descending colon tissue male adult (40 years)
experiment encode accession: ENCSR001UVQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR856YCA
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB071DDE
size range: 200-600

source_name: Homo sapiens male adult (40 years) mucosa of descending colon tissue

value: mucosa of descending colon

value: adult

value: 40 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: DM:no; HTN:yes; CAD:no

value: ENCBS724VYT at ENCODE; https://www.encodeproject.org/ENCBS724VYT/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: polyA plus RNA-seq from activated regulatory T cell (ENCLB407BQY)

description:
https://www.encodeproject.org/experiments/ENCSR840QUI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR840QUI
assay title: polyA plus RNA-seq
assembly: mm10
encode release date: 2017-03-07
lab: Christina Leslie, MSKCC
library encode accession: ENCLB407BQY
fragmentation methods: shearing (Covaris generic)
size range: 100-300

source_name: Mus musculus male (3 weeks) activated regulatory T primary cell originated from whole organism

value: activated regulatory T cell

value: male

value: 3 week

value: ENCBS993WDP at ENCODE; https://www.encodeproject.org/ENCBS993WDP/

value: Derived from ENCODE donor ENCDO405HZR; https://www.encodeproject.org/ENCDO405HZR/


title: Histone ChIP-seq from mucosa of descending colon (ENCLB553MKP)

description:
https://www.encodeproject.org/experiments/ENCSR001UVQ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 ChIP-seq on mucosa of descending colon tissue male adult (40 years)
experiment encode accession: ENCSR001UVQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR856YCA
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB553MKP
size range: 200-600

value: tissue


title: DNase-seq from left cerebral cortex (ENCLB661HMR)

description:
https://www.encodeproject.org/experiments/ENCSR883RWB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR883RWB
assay title: DNase-seq
assembly: mm10
encode release date: 2021-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB661HMR

value: left cerebral cortex

value: B6Cast F1 PND 2 months Female 06 left cerebral cortex for Altius Stam biobank

value: female

value: unknown

value: 2 month

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS523POH at ENCODE; https://www.encodeproject.org/ENCBS523POH/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from adrenal gland (ENCLB386XNW)

description:
https://www.encodeproject.org/experiments/ENCSR455VIA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR455VIA
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB386XNW

source_name: Mus musculus strain B6CASTF1/J female (2 months) adrenal gland tissue

value: adrenal gland

value: B6Cast F1 PND 2 months Female 06 adrenal gland for Altius Stam core

value: ENCBS554DER at ENCODE; https://www.encodeproject.org/ENCBS554DER/


title: Histone ChIP-seq from heart left ventricle (ENCLB028LRD)

description:
https://www.encodeproject.org/experiments/ENCSR130XNJ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on heart left ventricle tissue male adult (61 years).
experiment encode accession: ENCSR130XNJ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR696HNV
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB028LRD
size range: 200-600

source_name: Homo sapiens male adult (61 years) heart left ventricle tissue

value: heart left ventricle

value: male

value: adult

value: 61 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: nonischemic (EF 11% LVEDD 7.7; RV severe dilation, severe dysfunction)

value: ENCBS700NCU at ENCODE; https://www.encodeproject.org/ENCBS700NCU/

value: Derived from ENCODE donor ENCDO808ASZ; https://www.encodeproject.org/ENCDO808ASZ/


title: Histone ChIP-seq from heart left ventricle (ENCLB355NWX)

description:
https://www.encodeproject.org/experiments/ENCSR130XNJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on heart left ventricle tissue male adult (61 years).
experiment encode accession: ENCSR130XNJ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR696HNV
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB355NWX
size range: 200-600

value: tissue


title: polyA plus RNA-seq from activated regulatory T cell (ENCLB310YBR)

description:
https://www.encodeproject.org/experiments/ENCSR840QUI/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR840QUI
assay title: polyA plus RNA-seq
assembly: mm10
encode release date: 2017-03-07
lab: Christina Leslie, MSKCC
library encode accession: ENCLB310YBR
fragmentation methods: shearing (Covaris generic)
size range: 100-300

value: activated regulatory T cell

value: primary cell

value: unknown

value: 3 week

value: Christina Leslie, MSKCC

value: Christina Leslie

value: ENCBS993WDP at ENCODE; https://www.encodeproject.org/ENCBS993WDP/

value: Derived from ENCODE donor ENCDO405HZR; https://www.encodeproject.org/ENCDO405HZR/


title: Mint-ChIP-seq from activated T-helper 2 cell (ENCLB273ZNC)

description:
https://www.encodeproject.org/experiments/ENCSR002RFV/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on activated T-helper 2 cell male adult (35 years) treated with 5 ?g/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 , anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR002RFV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR193QAG
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB273ZNC

value: activated T-helper 2 cell

value: male

value: 35 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_name:Interferon-gamma antibody; treatment_type:antibody; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS271FSH at ENCODE; https://www.encodeproject.org/ENCBS271FSH/

value: Derived from ENCODE donor ENCDO374BBL; https://www.encodeproject.org/ENCDO374BBL/


title: DNase-seq from adrenal gland (ENCLB096HDU)

description:
https://www.encodeproject.org/experiments/ENCSR455VIA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR455VIA
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB096HDU

value: adrenal gland

value: tissue

value: B6Cast F1 PND 2 months Female 05 adrenal gland for Altius Stam core

value: female

value: 2 month

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS006QMU at ENCODE; https://www.encodeproject.org/ENCBS006QMU/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from right cerebral cortex (ENCLB534DWD)

description:
https://www.encodeproject.org/experiments/ENCSR450ROJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR450ROJ
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-07
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB534DWD

source_name: Mus musculus strain B6CASTF1/J male (10 days) right cerebral cortex tissue

value: right cerebral cortex

value: B6Cast F1 PND10 Male 06 right cerebral cortex for Altius Stam biobank

value: unknown

value: 10 day

value: ENCBS348RMW at ENCODE; https://www.encodeproject.org/ENCBS348RMW/


title: polyA plus RNA-seq from activated regulatory T cell (ENCLB484CPS)

description:
https://www.encodeproject.org/experiments/ENCSR840QUI/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR840QUI
assay title: polyA plus RNA-seq
assembly: mm10
encode release date: 2017-03-07
lab: Christina Leslie, MSKCC
library encode accession: ENCLB484CPS
fragmentation methods: shearing (Covaris generic)
size range: 100-300

value: activated regulatory T cell

value: primary cell

value: male

value: 3 week

value: Christina Leslie, MSKCC

value: Christina Leslie

value: ENCBS993WDP at ENCODE; https://www.encodeproject.org/ENCBS993WDP/

value: Derived from ENCODE donor ENCDO405HZR; https://www.encodeproject.org/ENCDO405HZR/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB007MLW)

description:
https://www.encodeproject.org/experiments/ENCSR334FVC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years).
experiment encode accession: ENCSR334FVC
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR634QZP
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB007MLW
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: female

value: adult

value: 90 or above year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS868XXM at ENCODE; https://www.encodeproject.org/ENCBS868XXM/

value: Derived from ENCODE donor ENCDO101GPB; https://www.encodeproject.org/ENCDO101GPB/


title: TF ChIP-seq from HepG2 (ENCLB869HRB)

description:
https://www.encodeproject.org/experiments/ENCSR130NZQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR130NZQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2021-08-13
lab: Richard Myers, HAIB
library encode accession: ENCLB869HRB
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens PRDM4

tag: line

value: cell line

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: hepatocellular carcinoma

value: ENCBS210BXY at ENCODE; https://www.encodeproject.org/ENCBS210BXY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB222PNA)

description:
https://www.encodeproject.org/experiments/ENCSR334FVC/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years).
experiment encode accession: ENCSR334FVC
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR634QZP
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB222PNA
size range: 200-600

value: middle frontal area 46


title: TF ChIP-seq from HepG2 (ENCLB930BKW)

description:
https://www.encodeproject.org/experiments/ENCSR130NZQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR130NZQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2021-08-13
lab: Richard Myers, HAIB
library encode accession: ENCLB930BKW
fragmentation methods: sonication (generic)

value: male

value: ENCBS547LAL at ENCODE; https://www.encodeproject.org/ENCBS547LAL/


title: Mint-ChIP-seq from mesothelial cell of epicardium (ENCLB872THE)

description:
https://www.encodeproject.org/experiments/ENCSR213GNK/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on mesothelial cell of epicardium
experiment encode accession: ENCSR213GNK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR268SLH
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB872THE

value: mesothelial cell of epicardium

value: in vitro differentiated cells

value: WA09 derived epicardium (mesothelium)

value: female

value: healthy

value: embryonic

value: 5 day

value: SESCC

value: ENCBS924VAR at ENCODE; https://www.encodeproject.org/ENCBS924VAR/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: DNase-seq from lung (ENCLB988AFC)

description:
https://www.encodeproject.org/experiments/ENCSR575YLW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR575YLW
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-07
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB988AFC

source_name: Mus musculus strain B6CASTF1/J male (10 days) lung tissue

value: lung

value: tissue

value: B6Cast F1 PND10 Male 06 lung for Altius Stam biobank

value: unknown

value: 10 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS314SJN at ENCODE; https://www.encodeproject.org/ENCBS314SJN/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: TF ChIP-seq from middle frontal area 46 (ENCLB120MLU)

description:
https://www.encodeproject.org/experiments/ENCSR332WTG/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF TF ChIP-seq on middle frontal area 46 tissue female adult (90 or above years).
experiment encode accession: ENCSR332WTG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR634QZP
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB120MLU
size range: 200-600

value: CTCF

value: middle frontal area 46

value: adult

value: 90 or above year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS868XXM at ENCODE; https://www.encodeproject.org/ENCBS868XXM/

value: Derived from ENCODE donor ENCDO101GPB; https://www.encodeproject.org/ENCDO101GPB/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB507DWJ)

description:
https://www.encodeproject.org/experiments/ENCSR128YOH/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (79 years).
experiment encode accession: ENCSR128YOH
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR968XKG
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB507DWJ
size range: 200-600

source_name: Homo sapiens female adult (79 years) middle frontal area 46 tissue

value: female

value: 79 year

value: ENCBS246FGU at ENCODE; https://www.encodeproject.org/ENCBS246FGU/

value: Derived from ENCODE donor ENCDO609ZOG; https://www.encodeproject.org/ENCDO609ZOG/


title: DNase-seq from lung (ENCLB835JDK)

description:
https://www.encodeproject.org/experiments/ENCSR575YLW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR575YLW
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-07
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB835JDK

value: lung

value: tissue

value: B6Cast F1 PND10 Male 05 lung for Altius Stam biobank

value: male

value: unknown

value: 10 day

value: ENCBS953ZDS at ENCODE; https://www.encodeproject.org/ENCBS953ZDS/


title: polyA plus RNA-seq from regulatory T cell (ENCLB661XFK)

description:
https://www.encodeproject.org/experiments/ENCSR833JYG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR833JYG
assay title: polyA plus RNA-seq
assembly: mm10
encode release date: 2017-03-07
lab: Christina Leslie, MSKCC
library encode accession: ENCLB661XFK
fragmentation methods: shearing (Covaris generic)
size range: 100-300

source_name: Mus musculus strain Foxp3CreERT2 x Rosa26YFP male adult (4 months) regulatory T primary cell originated from bone marrow hematopoietic cell

value: regulatory T cell

value: primary cell

value: adult

value: 4 month

value: Christina Leslie, MSKCC

value: Christina Leslie

value: ENCBS378XAM at ENCODE; https://www.encodeproject.org/ENCBS378XAM/

value: Derived from ENCODE donor ENCDO820VCL; https://www.encodeproject.org/ENCDO820VCL/


title: Histone ChIP-seq from inflammation-experienced regulatory T-cells (ENCLB130WBM)

description:
https://www.encodeproject.org/experiments/ENCSR791RPR/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR791RPR
assay title: Histone ChIP-seq
assembly: mm10
encode release date: 2017-03-07
lab: Christina Leslie, MSKCC
library encode accession: ENCLB130WBM

source_name: Mus musculus strain Foxp3CreERT2 x Rosa26YFP male adult (6 months) inflammation-experienced regulatory T-cells primary cell originated from bone marrow hematopoietic cell

value: 6 month

value: ENCBS304YTA at ENCODE; https://www.encodeproject.org/ENCBS304YTA/


title: DNase-seq from lung (ENCLB135VZZ)

description:
https://www.encodeproject.org/experiments/ENCSR720KMQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR720KMQ
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB135VZZ

source_name: Mus musculus strain B6CASTF1/J male (4 days) lung tissue

value: lung

value: B6Cast F1 PND4 Male 05 lung for Altius Stam biobank

value: 4 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS583XCX at ENCODE; https://www.encodeproject.org/ENCBS583XCX/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB636ELX)

description:
https://www.encodeproject.org/experiments/ENCSR128YOH/
***************
biological replicate number: 1
technical replicate number: 3
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (79 years).
experiment encode accession: ENCSR128YOH
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR968XKG
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB636ELX
size range: 200-600

value: middle frontal area 46

value: tissue

value: female

value: 79 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS246FGU at ENCODE; https://www.encodeproject.org/ENCBS246FGU/

value: Derived from ENCODE donor ENCDO609ZOG; https://www.encodeproject.org/ENCDO609ZOG/


title: Histone ChIP-seq from inflammation-experienced regulatory T-cells (ENCLB291DYD)

description:
https://www.encodeproject.org/experiments/ENCSR791RPR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR791RPR
assay title: Histone ChIP-seq
assembly: mm10
encode release date: 2017-03-07
lab: Christina Leslie, MSKCC
library encode accession: ENCLB291DYD

value: primary cell

value: male

value: adult

value: 6 month

value: Christina Leslie, MSKCC

value: Christina Leslie

value: Derived from ENCODE donor ENCDO820VCL; https://www.encodeproject.org/ENCDO820VCL/


title: Mint-ChIP-seq from T-helper 1 cell (ENCLB289SHY)

description:
https://www.encodeproject.org/experiments/ENCSR128HUJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on T-helper 1 cell male adult (35 years) treated with 1 ?g/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta
experiment encode accession: ENCSR128HUJ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR352UAU
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB289SHY

source_name: Homo sapiens male adult (35 years) T-helper 1 primary cell treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta

value: T-helper 1 cell

value: 35 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_name:Interleukin-4 antibody; treatment_type:antibody; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; treatment_term_id:UniProtKB:P29460; treatment_term_name:Interleukin-12 subunit beta; treatment_type:protein;

value: ENCBS111UJE at ENCODE; https://www.encodeproject.org/ENCBS111UJE/

value: Derived from ENCODE donor ENCDO374BBL; https://www.encodeproject.org/ENCDO374BBL/


title: Mint-ChIP-seq from T-helper 1 cell (ENCLB930IZG)

description:
https://www.encodeproject.org/experiments/ENCSR128HUJ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on T-helper 1 cell male adult (35 years) treated with 1 ?g/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta
experiment encode accession: ENCSR128HUJ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR352UAU
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB930IZG


title: polyA plus RNA-seq from regulatory T cell (ENCLB167RUL)

description:
https://www.encodeproject.org/experiments/ENCSR833JYG/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR833JYG
assay title: polyA plus RNA-seq
assembly: mm10
encode release date: 2017-03-07
lab: Christina Leslie, MSKCC
library encode accession: ENCLB167RUL
fragmentation methods: shearing (Covaris generic)
size range: 100-300

value: regulatory T cell

value: 4 month

value: ENCBS378XAM at ENCODE; https://www.encodeproject.org/ENCBS378XAM/


title: DNase-seq from lung (ENCLB386PEW)

description:
https://www.encodeproject.org/experiments/ENCSR720KMQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR720KMQ
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB386PEW

value: lung

value: tissue

value: B6Cast F1 PND4 Male 06 lung for Altius Stam biobank

value: unknown

value: 4 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS720QEK at ENCODE; https://www.encodeproject.org/ENCBS720QEK/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: polyA plus RNA-seq from inflammation-experienced regulatory T-cells (ENCLB375IZY)

description:
https://www.encodeproject.org/experiments/ENCSR789TBW/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR789TBW
assay title: polyA plus RNA-seq
assembly: mm10
encode release date: 2017-03-07
lab: Christina Leslie, MSKCC
library encode accession: ENCLB375IZY
fragmentation methods: shearing (Covaris generic)
size range: 100-300

value: primary cell

value: male

value: adult

value: 6 month

value: Christina Leslie, MSKCC

value: Christina Leslie

value: ENCBS548NEG at ENCODE; https://www.encodeproject.org/ENCBS548NEG/

value: Derived from ENCODE donor ENCDO820VCL; https://www.encodeproject.org/ENCDO820VCL/


title: DNase-seq from cerebellum (ENCLB043CTD)

description:
https://www.encodeproject.org/experiments/ENCSR448KDU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR448KDU
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB043CTD

source_name: Mus musculus strain B6CASTF1/J male (2 months) cerebellum tissue

value: cerebellum

value: B6Cast F1 PND 2 months Male 05 cerebellum for Altius Stam core

value: 2 month

value: ENCBS751JTV at ENCODE; https://www.encodeproject.org/ENCBS751JTV/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB097DUO)

description:
https://www.encodeproject.org/experiments/ENCSR128YOH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (79 years).
experiment encode accession: ENCSR128YOH
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR968XKG
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB097DUO
size range: 200-600

value: middle frontal area 46

value: tissue

value: female

value: 79 year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS246FGU at ENCODE; https://www.encodeproject.org/ENCBS246FGU/

value: Derived from ENCODE donor ENCDO609ZOG; https://www.encodeproject.org/ENCDO609ZOG/


title: Histone ChIP-seq from heart left ventricle (ENCLB039CFG)

description:
https://www.encodeproject.org/experiments/ENCSR123OMJ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on heart left ventricle tissue male adult (66 years).
experiment encode accession: ENCSR123OMJ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR061EXX
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB039CFG
size range: 200-600

source_name: Homo sapiens male adult (66 years) heart left ventricle tissue

value: heart left ventricle

value: male

value: ischemic (EF 29% LVEDD 5.4; RV normal size, mild dysfunction)

value: adult

value: 66 year

value: Shin Lin

value: ENCBS966SZA at ENCODE; https://www.encodeproject.org/ENCBS966SZA/

value: Derived from ENCODE donor ENCDO926KEV; https://www.encodeproject.org/ENCDO926KEV/


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB472HVB)

description:
https://www.encodeproject.org/experiments/ENCSR124IGC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 Mint-ChIP-seq on CD4-positive, CD25-positive, alpha-beta regulatory T cell with multiple sclerosis..
experiment encode accession: ENCSR124IGC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR918BGN
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB472HVB

source_name: Homo sapiens with multiple sclerosis; CD4-positive, CD25-positive, alpha-beta regulatory T primary cell, preserved by cryopreservation

value: primary cell

value: Treg CD3+ CD4+ CD8- CD25+ CD127-

value: not collected

value: unknown

value: David Hafler

value: multiple sclerosis

value: ENCBS595ZYR at ENCODE; https://www.encodeproject.org/ENCBS595ZYR/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB673RHR)

description:
https://www.encodeproject.org/experiments/ENCSR124IGC/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 Mint-ChIP-seq on CD4-positive, CD25-positive, alpha-beta regulatory T cell with multiple sclerosis..
experiment encode accession: ENCSR124IGC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR918BGN
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB673RHR

value: Bradley Bernstein, Broad


title: DNase-seq from right cerebral cortex (ENCLB013HSM)

description:
https://www.encodeproject.org/experiments/ENCSR450ROJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR450ROJ
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-07
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB013HSM

value: right cerebral cortex

value: tissue

value: B6Cast F1 PND10 Male 05 right cerebral cortex for Altius Stam biobank

value: 10 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS586TVQ at ENCODE; https://www.encodeproject.org/ENCBS586TVQ/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: polyA plus RNA-seq from regulatory T cell (ENCLB591HFM)

description:
https://www.encodeproject.org/experiments/ENCSR833JYG/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR833JYG
assay title: polyA plus RNA-seq
assembly: mm10
encode release date: 2017-03-07
lab: Christina Leslie, MSKCC
library encode accession: ENCLB591HFM
fragmentation methods: shearing (Covaris generic)
size range: 100-300

value: regulatory T cell

value: primary cell

value: male

value: adult

value: 4 month

value: Christina Leslie, MSKCC

value: Christina Leslie

value: ENCBS378XAM at ENCODE; https://www.encodeproject.org/ENCBS378XAM/

value: Derived from ENCODE donor ENCDO820VCL; https://www.encodeproject.org/ENCDO820VCL/


title: polyA plus RNA-seq from inflammation-experienced regulatory T-cells (ENCLB659FLV)

description:
https://www.encodeproject.org/experiments/ENCSR789TBW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR789TBW
assay title: polyA plus RNA-seq
assembly: mm10
encode release date: 2017-03-07
lab: Christina Leslie, MSKCC
library encode accession: ENCLB659FLV
fragmentation methods: shearing (Covaris generic)
size range: 100-300

value: 6 month

value: ENCBS548NEG at ENCODE; https://www.encodeproject.org/ENCBS548NEG/


title: DNase-seq from cerebellum (ENCLB758FWQ)

description:
https://www.encodeproject.org/experiments/ENCSR448KDU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR448KDU
assay title: DNase-seq
assembly: mm10
encode release date: 2021-06-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB758FWQ

value: cerebellum

value: tissue

value: B6Cast F1 PND 2 months Male 06 cerebellum for Altius Stam core

value: unknown

value: 2 month

value: ENCBS799UEN at ENCODE; https://www.encodeproject.org/ENCBS799UEN/


title: TF ChIP-seq from middle frontal area 46 (ENCLB452YEA)

description:
https://www.encodeproject.org/experiments/ENCSR332WTG/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF TF ChIP-seq on middle frontal area 46 tissue female adult (90 or above years).
experiment encode accession: ENCSR332WTG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR634QZP
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB452YEA
size range: 200-600

value: CTCF

value: middle frontal area 46

value: female

value: 90 or above year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS868XXM at ENCODE; https://www.encodeproject.org/ENCBS868XXM/

value: Derived from ENCODE donor ENCDO101GPB; https://www.encodeproject.org/ENCDO101GPB/


title: Mint-ChIP-seq from progenitor cell of endocrine pancreas (ENCLB259GPB)

description:
https://www.encodeproject.org/experiments/ENCSR332WFE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on progenitor cell of endocrine pancreas
experiment encode accession: ENCSR332WFE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR546XZC
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB259GPB
fragmentation methods: none

source_name: Homo sapiens female embryo (5 days) progenitor of endocrine pancreas in vitro differentiated cells

value: progenitor cell of endocrine pancreas

value: in vitro differentiated cells

value: WA09 derived pancreatic progenitor cells

value: embryonic

value: 5 day

value: SESCC

value: healthy

value: ENCBS832MSN at ENCODE; https://www.encodeproject.org/ENCBS832MSN/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: polyA plus RNA-seq from inflammation-experienced regulatory T-cells (ENCLB139VXL)

description:
https://www.encodeproject.org/experiments/ENCSR789TBW/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR789TBW
assay title: polyA plus RNA-seq
assembly: mm10
encode release date: 2017-03-07
lab: Christina Leslie, MSKCC
library encode accession: ENCLB139VXL
fragmentation methods: shearing (Covaris generic)
size range: 100-300

value: primary cell

value: male

value: adult

value: 6 month

value: Christina Leslie, MSKCC

value: Christina Leslie

value: ENCBS548NEG at ENCODE; https://www.encodeproject.org/ENCBS548NEG/

value: Derived from ENCODE donor ENCDO820VCL; https://www.encodeproject.org/ENCDO820VCL/


title: Mint-ChIP-seq from progenitor cell of endocrine pancreas (ENCLB821IXX)

description:
https://www.encodeproject.org/experiments/ENCSR332WFE/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on progenitor cell of endocrine pancreas
experiment encode accession: ENCSR332WFE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR546XZC
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB821IXX

source_name: Homo sapiens female embryo (5 days) progenitor of endocrine pancreas in vitro differentiated cells originated from progenitor cell of endocrine pancreas

value: progenitor cell of endocrine pancreas

value: female

value: Bradley Bernstein, Broad

value: ENCBS825BIV at ENCODE; https://www.encodeproject.org/ENCBS825BIV/


title: DNase-seq from heart (ENCLB041WVX)

description:
https://www.encodeproject.org/experiments/ENCSR657WHR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR657WHR
assay title: DNase-seq
assembly: mm10
encode release date: 2021-10-06
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB041WVX

source_name: Mus musculus strain B6CASTF1/J male (14 days) heart tissue

value: heart

value: tissue

value: B6Cast F1 PND14 3x Males 05 heart for Altius Stam biobank

value: unknown

value: 14 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS707GYB at ENCODE; https://www.encodeproject.org/ENCBS707GYB/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: Mint-ChIP-seq from progenitor cell of endocrine pancreas (ENCLB125DMI)

description:
https://www.encodeproject.org/experiments/ENCSR332WFE/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on progenitor cell of endocrine pancreas
experiment encode accession: ENCSR332WFE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR546XZC
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB125DMI
fragmentation methods: none

value: in vitro differentiated cells

value: WA09 derived pancreatic progenitor cells

value: embryonic

value: 5 day

value: SESCC

value: healthy

value: ENCBS832MSN at ENCODE; https://www.encodeproject.org/ENCBS832MSN/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from progenitor cell of endocrine pancreas (ENCLB061NSO)

description:
https://www.encodeproject.org/experiments/ENCSR332WFE/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on progenitor cell of endocrine pancreas
experiment encode accession: ENCSR332WFE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR546XZC
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB061NSO

value: progenitor cell of endocrine pancreas

value: female

value: Bradley Bernstein, Broad

value: ENCBS825BIV at ENCODE; https://www.encodeproject.org/ENCBS825BIV/