title: microRNA-seq from layer of hippocampus (ENCLB166EDF)

description:
https://www.encodeproject.org/experiments/ENCSR060REO/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND 2 months male hippocampus microRNA-seq from Mortazavi
experiment encode accession: ENCSR060REO
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-09-08
lab: Ali Mortazavi, UCI
library encode accession: ENCLB166EDF
size range: <30

value: unknown

value: ENCBS379YDE at ENCODE; https://www.encodeproject.org/ENCBS379YDE/


title: microRNA-seq from gastrocnemius (ENCLB669EPK)

status: Public on Nov 04 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR037MYU/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND10 female gastrocnemius microRNA-seq from Mortazavi
experiment encode accession: ENCSR037MYU
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-09-08
lab: Ali Mortazavi, UCI
library encode accession: ENCLB669EPK
size range: <30

library_source: transcriptomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: total RNA

organism: Mus musculus

source_name: Mus musculus strain B6CASTF1/J female (10 days) gastrocnemius tissue

value: gastrocnemius

value: tissue

tag: description

value: B6Cast F1 PND10 Female 03 gastrocnemius for Wold core

tag: biosample encode accession

tag: Sex

value: female

tag: dev stage

tag: age

value: 10 day

tag: lab

value: Barbara Wold, Caltech

tag: source

value: The Jackson Laboratory

tag: link

value: ENCBS927BKO at ENCODE; https://www.encodeproject.org/ENCBS927BKO/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: microRNA-seq from gastrocnemius (ENCLB223VPR)

description:
https://www.encodeproject.org/experiments/ENCSR026XXQ/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND4 female gastrocnemius microRNA-seq from Mortazavi
experiment encode accession: ENCSR026XXQ
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-09-08
lab: Ali Mortazavi, UCI
library encode accession: ENCLB223VPR
size range: <30

source_name: Mus musculus strain B6CASTF1/J female (4 days) gastrocnemius tissue

value: B6Cast F1 PND4 Female 04 gastrocnemius for Wold core

value: 4 day

value: ENCBS519KGT at ENCODE; https://www.encodeproject.org/ENCBS519KGT/


title: microRNA-seq from gastrocnemius (ENCLB030LDT)

description:
https://www.encodeproject.org/experiments/ENCSR026XXQ/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND4 female gastrocnemius microRNA-seq from Mortazavi
experiment encode accession: ENCSR026XXQ
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-09-08
lab: Ali Mortazavi, UCI
library encode accession: ENCLB030LDT
size range: <30

value: B6Cast F1 PND4 Female 03 gastrocnemius for Wold core

value: ENCBS559PTX at ENCODE; https://www.encodeproject.org/ENCBS559PTX/


title: microRNA-seq from layer of hippocampus (ENCLB417BAJ)

description:
https://www.encodeproject.org/experiments/ENCSR021XWW/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND10 male hippocampus microRNA-seq from Mortazavi
experiment encode accession: ENCSR021XWW
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-09-08
lab: Ali Mortazavi, UCI
library encode accession: ENCLB417BAJ
size range: <30

source_name: Mus musculus strain B6CASTF1/J male (10 days) layer of hippocampus tissue

value: layer of hippocampus

value: male

value: ENCBS435SED at ENCODE; https://www.encodeproject.org/ENCBS435SED/


title: microRNA-seq from gastrocnemius (ENCLB775CIQ)

description:
https://www.encodeproject.org/experiments/ENCSR024WYL/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND36 female gastrocnemius microRNA-seq from Mortazavi
experiment encode accession: ENCSR024WYL
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-09-08
lab: Ali Mortazavi, UCI
library encode accession: ENCLB775CIQ
size range: <30

source_name: Mus musculus strain B6CASTF1/J female (36 days) gastrocnemius tissue

value: gastrocnemius

value: B6Cast F1 PND36 Female 03 gastrocnemius for Wold core

value: unknown

value: 36 day

value: ENCBS342UJO at ENCODE; https://www.encodeproject.org/ENCBS342UJO/


title: microRNA-seq from gastrocnemius (ENCLB413BNS)

description:
https://www.encodeproject.org/experiments/ENCSR515OMM/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND10 male gastrocnemius microRNA-seq from Mortazavi
experiment encode accession: ENCSR515OMM
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-09-08
lab: Ali Mortazavi, UCI
library encode accession: ENCLB413BNS
size range: <30

source_name: Mus musculus strain B6CASTF1/J male (10 days) gastrocnemius tissue

value: tissue

value: B6Cast F1 PND10 Male 04 gastrocnemius for Wold core

value: 10 day

value: Barbara Wold, Caltech

value: ENCBS078GAU at ENCODE; https://www.encodeproject.org/ENCBS078GAU/


title: microRNA-seq from gastrocnemius (ENCLB042DOI)

description:
https://www.encodeproject.org/experiments/ENCSR515OMM/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND10 male gastrocnemius microRNA-seq from Mortazavi
experiment encode accession: ENCSR515OMM
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-09-08
lab: Ali Mortazavi, UCI
library encode accession: ENCLB042DOI
size range: <30

value: B6Cast F1 PND10 Male 03 gastrocnemius for Wold core

value: The Jackson Laboratory

value: ENCBS766LFK at ENCODE; https://www.encodeproject.org/ENCBS766LFK/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: microRNA-seq from gastrocnemius (ENCLB106TDH)

description:
https://www.encodeproject.org/experiments/ENCSR024WYL/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND36 female gastrocnemius microRNA-seq from Mortazavi
experiment encode accession: ENCSR024WYL
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-09-08
lab: Ali Mortazavi, UCI
library encode accession: ENCLB106TDH
size range: <30

value: B6Cast F1 PND36 Female 04 gastrocnemius for Wold core

value: female

value: ENCBS062SUO at ENCODE; https://www.encodeproject.org/ENCBS062SUO/


title: microRNA-seq from layer of hippocampus (ENCLB782NKN)

description:
https://www.encodeproject.org/experiments/ENCSR021XWW/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND10 male hippocampus microRNA-seq from Mortazavi
experiment encode accession: ENCSR021XWW
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-09-08
lab: Ali Mortazavi, UCI
library encode accession: ENCLB782NKN
size range: <30

value: layer of hippocampus

value: male

value: ENCBS426ZTY at ENCODE; https://www.encodeproject.org/ENCBS426ZTY/


title: microRNA-seq from gastrocnemius (ENCLB849LBK)

description:
https://www.encodeproject.org/experiments/ENCSR230TOQ/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND 18-20 months male gastrocnemius microRNA-seq from Mortazavi
experiment encode accession: ENCSR230TOQ
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-09-08
lab: Ali Mortazavi, UCI
library encode accession: ENCLB849LBK
size range: <30

source_name: Mus musculus strain B6CASTF1/J male adult (18-20 months) gastrocnemius tissue

value: gastrocnemius

value: B6Cast F1 DPN18-20months

value: adult

value: 18-20 month

value: ENCBS074HMM at ENCODE; https://www.encodeproject.org/ENCBS074HMM/


title: microRNA-seq from gastrocnemius (ENCLB710ZBN)

description:
https://www.encodeproject.org/experiments/ENCSR230TOQ/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND 18-20 months male gastrocnemius microRNA-seq from Mortazavi
experiment encode accession: ENCSR230TOQ
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-09-08
lab: Ali Mortazavi, UCI
library encode accession: ENCLB710ZBN
size range: <30

value: tissue

value: Barbara Wold, Caltech

value: ENCBS983BLX at ENCODE; https://www.encodeproject.org/ENCBS983BLX/


title: microRNA-seq from layer of hippocampus (ENCLB857QPU)

description:
https://www.encodeproject.org/experiments/ENCSR014OEA/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND 18-20 months male hippocampus microRNA-seq from Mortazavi
experiment encode accession: ENCSR014OEA
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-09-08
lab: Ali Mortazavi, UCI
library encode accession: ENCLB857QPU
size range: <30

source_name: Mus musculus strain B6CASTF1/J male (18-20 months) layer of hippocampus tissue

value: hippocampus_B6Cast F1_18 - 20 months_male_7_ENC4_cDNA516

value: unknown

value: The Jackson Laboratory

value: ENCBS226ECT at ENCODE; https://www.encodeproject.org/ENCBS226ECT/


title: microRNA-seq from layer of hippocampus (ENCLB244QON)

description:
https://www.encodeproject.org/experiments/ENCSR014OEA/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND 18-20 months male hippocampus microRNA-seq from Mortazavi
experiment encode accession: ENCSR014OEA
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-09-08
lab: Ali Mortazavi, UCI
library encode accession: ENCLB244QON
size range: <30

value: hippocampus_B6Cast F1_18 - 20 months_male_6_ENC4_cDNA515

value: ENCBS168YXE at ENCODE; https://www.encodeproject.org/ENCBS168YXE/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: RAMPAGE from foreskin keratinocyte (ENCLB514DYV)

description:
https://www.encodeproject.org/experiments/ENCSR469BXX/
***************
biological replicate number: 1
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 0.5 of differentiation
experiment encode accession: ENCSR469BXX
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR034RPU
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB514DYV
size range: 300-1000

organism: Homo sapiens

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium

extract_protocol:
general protocol: https://www.encodeproject.org/documents/9021cb71-35b1-4a9a-9fcc-38c6df5e9fea/@@download/attachment/ggr.keratinocyte.snyder-lab.rna_assays.pdf
extraction method: Qiagen RNA extraction

value: foreskin keratinocyte

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 0.5

value: male

value: newborn

value: 2-4 day

value: Paul Khavari, Stanford

value: Paul Khavari

tag: treatments

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration_units:day;

tag: health state

value: Healthy

tag: passage number

value: ENCBS927PYN at ENCODE; https://www.encodeproject.org/ENCBS927PYN/

value: Derived from ENCODE donor ENCDO615NVN; https://www.encodeproject.org/ENCDO615NVN/


title: microRNA-seq from gastrocnemius (ENCLB898ZMJ)

description:
https://www.encodeproject.org/experiments/ENCSR143LTW/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND25 female gastrocnemius microRNA-seq from Mortazavi
experiment encode accession: ENCSR143LTW
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-09-08
lab: Ali Mortazavi, UCI
library encode accession: ENCLB898ZMJ
size range: <30

source_name: Mus musculus strain B6CASTF1/J female (25 days) gastrocnemius tissue

value: gastrocnemius

value: tissue

value: B6Cast F1 PND25 Female 04 gastrocnemius for Wold core

value: female

value: unknown

value: 25 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS549WDN at ENCODE; https://www.encodeproject.org/ENCBS549WDN/


title: microRNA-seq from gastrocnemius (ENCLB433FTF)

description:
https://www.encodeproject.org/experiments/ENCSR143LTW/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND25 female gastrocnemius microRNA-seq from Mortazavi
experiment encode accession: ENCSR143LTW
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-09-08
lab: Ali Mortazavi, UCI
library encode accession: ENCLB433FTF
size range: <30

value: B6Cast F1 PND25 Female 03 gastrocnemius for Wold core

value: ENCBS508VOV at ENCODE; https://www.encodeproject.org/ENCBS508VOV/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: RAMPAGE from foreskin keratinocyte (ENCLB059RQG)

description:
https://www.encodeproject.org/experiments/ENCSR782YGS/
***************
biological replicate number: 1
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 3.0 of differentiation
experiment encode accession: ENCSR782YGS
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR959LTT
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB059RQG
size range: 300-1000

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 days

value: foreskin keratinocyte

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 3.0

value: male

value: newborn

value: 2-4 day

value: Paul Khavari, Stanford

value: Paul Khavari

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:2.5; duration_units:day;

value: ENCBS079LRU at ENCODE; https://www.encodeproject.org/ENCBS079LRU/


title: RAMPAGE from foreskin keratinocyte (ENCLB406LNS)

description:
https://www.encodeproject.org/experiments/ENCSR782YGS/
***************
biological replicate number: 2
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 3.0 of differentiation
experiment encode accession: ENCSR782YGS
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR959LTT
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB406LNS
size range: 300-1000

value: Healthy

value: ENCBS299ONK at ENCODE; https://www.encodeproject.org/ENCBS299ONK/

value: Derived from ENCODE donor ENCDO005EGE; https://www.encodeproject.org/ENCDO005EGE/


title: RAMPAGE from foreskin keratinocyte (ENCLB759VNX)

description:
https://www.encodeproject.org/experiments/ENCSR773EZK/
***************
biological replicate number: 1
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 2.0 of differentiation
experiment encode accession: ENCSR773EZK
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR034RPU
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB759VNX
size range: 300-1000

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1.5 days

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 2.0

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:1.5; duration_units:day;

value: ENCBS903GAF at ENCODE; https://www.encodeproject.org/ENCBS903GAF/

value: Derived from ENCODE donor ENCDO615NVN; https://www.encodeproject.org/ENCDO615NVN/


title: RAMPAGE from foreskin keratinocyte (ENCLB433BEN)

description:
https://www.encodeproject.org/experiments/ENCSR717OAA/
***************
biological replicate number: 1
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 5.5 of differentiation
experiment encode accession: ENCSR717OAA
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR527SSD
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB433BEN
size range: 300-1000

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days

value: foreskin keratinocyte

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 5.5

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:5; duration_units:day;

value: ENCBS797AGG at ENCODE; https://www.encodeproject.org/ENCBS797AGG/


title: RAMPAGE from foreskin keratinocyte (ENCLB444LTI)

description:
https://www.encodeproject.org/experiments/ENCSR773EZK/
***************
biological replicate number: 2
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 2.0 of differentiation
experiment encode accession: ENCSR773EZK
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR034RPU
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB444LTI
size range: 300-1000

value: primary cell

value: male

value: newborn

value: ENCBS242GKJ at ENCODE; https://www.encodeproject.org/ENCBS242GKJ/


title: GM DNase-seq from K562 (ENCLB040UDG)

description:
https://www.encodeproject.org/experiments/ENCSR643OAB/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated heterozygous DHS deletion in K562.
experiment encode accession: ENCSR643OAB
assay title: GM DNase-seq
assembly: GRCh38
encode release date: 2016-09-22
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB040UDG

library_source: genomic

molecule: genomic DNA

source_name: Homo sapiens K562 cell line genetically modified (deletion) using TALEN

tag: line

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: John Stamatoyannopoulos, UW

value: John Stamatoyannopoulos

value: ENCBS847CMA at ENCODE; https://www.encodeproject.org/ENCBS847CMA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: RAMPAGE from foreskin keratinocyte (ENCLB600LUO)

description:
https://www.encodeproject.org/experiments/ENCSR967IUK/
***************
biological replicate number: 1
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 3.5 of differentiation
experiment encode accession: ENCSR967IUK
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR959LTT
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB600LUO
size range: 300-1000

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days

value: foreskin keratinocyte

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 3.5

value: 2-4 day

value: Paul Khavari, Stanford

value: Paul Khavari

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:3; duration_units:day;

value: Healthy

value: ENCBS257OKQ at ENCODE; https://www.encodeproject.org/ENCBS257OKQ/

value: Derived from ENCODE donor ENCDO615NVN; https://www.encodeproject.org/ENCDO615NVN/


title: RAMPAGE from foreskin keratinocyte (ENCLB935OMR)

description:
https://www.encodeproject.org/experiments/ENCSR469BXX/
***************
biological replicate number: 2
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 0.5 of differentiation
experiment encode accession: ENCSR469BXX
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR034RPU
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB935OMR
size range: 300-1000

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 0.5

value: male

value: newborn

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration_units:day;

value: ENCBS978XWC at ENCODE; https://www.encodeproject.org/ENCBS978XWC/

value: Derived from ENCODE donor ENCDO005EGE; https://www.encodeproject.org/ENCDO005EGE/


title: RAMPAGE from foreskin keratinocyte (ENCLB533DSW)

description:
https://www.encodeproject.org/experiments/ENCSR717OAA/
***************
biological replicate number: 2
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 5.5 of differentiation
experiment encode accession: ENCSR717OAA
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR527SSD
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB533DSW
size range: 300-1000

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 5.5

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:5; duration_units:day;

value: ENCBS194HUS at ENCODE; https://www.encodeproject.org/ENCBS194HUS/


title: ChIA-PET from H1 (ENCLB810QPH)

description:
https://www.encodeproject.org/experiments/ENCSR543YTV/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human embryonic stem cells.
experiment encode accession: ENCSR543YTV
assay title: ChIA-PET
encode release date: 2021-08-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB810QPH
size range: 450-650

source_name: Homo sapiens male embryo neural in vitro differentiated cells originated from H1-hESC

tag: antibody

value: cell line

value: healthy

value: embryonic

value: unknown

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/

value: ENCBS278HPW at ENCODE; https://www.encodeproject.org/ENCBS278HPW/


title: ChIA-PET from H1 (ENCLB656LCO)

description:
https://www.encodeproject.org/experiments/ENCSR543YTV/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in human embryonic stem cells.
experiment encode accession: ENCSR543YTV
assay title: ChIA-PET
encode release date: 2021-08-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB656LCO
size range: 450-650

value: ENCBS858KUM at ENCODE; https://www.encodeproject.org/ENCBS858KUM/


title: RAMPAGE from foreskin keratinocyte (ENCLB122WGJ)

description:
https://www.encodeproject.org/experiments/ENCSR517CHX/
***************
biological replicate number: 1
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 5.0 of differentiation
experiment encode accession: ENCSR517CHX
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR959LTT
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB122WGJ
size range: 300-1000

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 days

value: foreskin keratinocyte

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 5.0

value: 2-4 day

value: Paul Khavari, Stanford

value: Paul Khavari

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:4.5; duration_units:day;

value: Healthy

value: ENCBS616IKM at ENCODE; https://www.encodeproject.org/ENCBS616IKM/

value: Derived from ENCODE donor ENCDO615NVN; https://www.encodeproject.org/ENCDO615NVN/


title: RAMPAGE from foreskin keratinocyte (ENCLB296DVH)

description:
https://www.encodeproject.org/experiments/ENCSR967IUK/
***************
biological replicate number: 2
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 3.5 of differentiation
experiment encode accession: ENCSR967IUK
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR959LTT
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB296DVH
size range: 300-1000

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 3.5

value: male

value: newborn

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:3; duration_units:day;

value: ENCBS408RGJ at ENCODE; https://www.encodeproject.org/ENCBS408RGJ/

value: Derived from ENCODE donor ENCDO005EGE; https://www.encodeproject.org/ENCDO005EGE/


title: GM DNase-seq from K562 (ENCLB856QCB)

description:
https://www.encodeproject.org/experiments/ENCSR762CZT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR762CZT
assay title: GM DNase-seq
assembly: hg19, GRCh38
encode release date: 2018-07-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB856QCB
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: cell line

value: TALEN-mediated heterozygous DHS deletion in K562.

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: John Stamatoyannopoulos, UW

value: John Stamatoyannopoulos

value: ENCBS903JSV at ENCODE; https://www.encodeproject.org/ENCBS903JSV/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: RAMPAGE from foreskin keratinocyte (ENCLB107ZAO)

description:
https://www.encodeproject.org/experiments/ENCSR629ZCB/
***************
biological replicate number: 2
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 1.5 of differentiation
experiment encode accession: ENCSR629ZCB
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR034RPU
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB107ZAO
size range: 300-1000

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1 day

value: foreskin keratinocyte

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 1.5

value: 2-4 day

value: Paul Khavari, Stanford

value: Paul Khavari

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:1; duration_units:day;

value: Healthy

value: ENCBS839SEF at ENCODE; https://www.encodeproject.org/ENCBS839SEF/


title: RAMPAGE from foreskin keratinocyte (ENCLB392ZTI)

description:
https://www.encodeproject.org/experiments/ENCSR629ZCB/
***************
biological replicate number: 1
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 1.5 of differentiation
experiment encode accession: ENCSR629ZCB
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR034RPU
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB392ZTI
size range: 300-1000

value: male

value: newborn

value: ENCBS819VZU at ENCODE; https://www.encodeproject.org/ENCBS819VZU/

value: Derived from ENCODE donor ENCDO615NVN; https://www.encodeproject.org/ENCDO615NVN/


title: RAMPAGE from foreskin keratinocyte (ENCLB731BES)

description:
https://www.encodeproject.org/experiments/ENCSR413FKS/
***************
biological replicate number: 2
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 4.0 of differentiation
experiment encode accession: ENCSR413FKS
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR959LTT
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB731BES
size range: 300-1000

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 days

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 4.0

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:3.5; duration_units:day;

value: ENCBS081FMT at ENCODE; https://www.encodeproject.org/ENCBS081FMT/

value: Derived from ENCODE donor ENCDO005EGE; https://www.encodeproject.org/ENCDO005EGE/


title: RAMPAGE from foreskin keratinocyte (ENCLB236INO)

description:
https://www.encodeproject.org/experiments/ENCSR517CHX/
***************
biological replicate number: 2
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 5.0 of differentiation
experiment encode accession: ENCSR517CHX
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR959LTT
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB236INO
size range: 300-1000

value: foreskin keratinocyte

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 5.0

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:4.5; duration_units:day;

value: ENCBS379WNC at ENCODE; https://www.encodeproject.org/ENCBS379WNC/


title: RAMPAGE from foreskin keratinocyte (ENCLB019ZGI)

description:
https://www.encodeproject.org/experiments/ENCSR313NYZ/
***************
biological replicate number: 1
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 2.5 of differentiation
experiment encode accession: ENCSR313NYZ
assay title: RAMPAGE
possible controls: ENCSR034RPU
encode release date: 2018-04-12
lab: Michael Snyder, Stanford
library encode accession: ENCLB019ZGI
size range: 300-1000

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2 days

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 2.5

value: 2-4 day

value: Paul Khavari, Stanford

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS924PBK at ENCODE; https://www.encodeproject.org/ENCBS924PBK/


title: RAMPAGE from foreskin keratinocyte (ENCLB408JMS)

description:
https://www.encodeproject.org/experiments/ENCSR313NYZ/
***************
biological replicate number: 2
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 2.5 of differentiation
experiment encode accession: ENCSR313NYZ
assay title: RAMPAGE
possible controls: ENCSR034RPU
encode release date: 2018-04-12
lab: Michael Snyder, Stanford
library encode accession: ENCLB408JMS
size range: 300-1000

value: male

value: newborn

value: Paul Khavari

value: Healthy

value: ENCBS024RNH at ENCODE; https://www.encodeproject.org/ENCBS024RNH/


title: GM DNase-seq from K562 (ENCLB634FJQ)

description:
https://www.encodeproject.org/experiments/ENCSR494CBV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR494CBV
assay title: GM DNase-seq
assembly: GRCh38
encode release date: 2019-01-08
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB634FJQ

source_name: Homo sapiens K562 immortalized cell line genetically modified (deletion) using TALEs

value: cell line

value: TALEN-mediated homozygous DHS deletion in K562.

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: John Stamatoyannopoulos, UW

value: ENCBS432FLT at ENCODE; https://www.encodeproject.org/ENCBS432FLT/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: RAMPAGE from foreskin keratinocyte (ENCLB011XUF)

description:
https://www.encodeproject.org/experiments/ENCSR101OBS/
***************
biological replicate number: 2
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 0.0 of differentiation
experiment encode accession: ENCSR101OBS
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR034RPU
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB011XUF
size range: 300-1000

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell

value: foreskin keratinocyte

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 0.0

value: 2-4 day

value: Paul Khavari, Stanford

value: ENCBS538XZS at ENCODE; https://www.encodeproject.org/ENCBS538XZS/

value: Derived from ENCODE donor ENCDO005EGE; https://www.encodeproject.org/ENCDO005EGE/


title: RAMPAGE from foreskin keratinocyte (ENCLB449ECX)

description:
https://www.encodeproject.org/experiments/ENCSR101OBS/
***************
biological replicate number: 1
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 0.0 of differentiation
experiment encode accession: ENCSR101OBS
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR034RPU
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB449ECX
size range: 300-1000

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, grown in 2D culture, day 0.0

value: male

value: newborn

value: Paul Khavari

value: Healthy

value: ENCBS666IIR at ENCODE; https://www.encodeproject.org/ENCBS666IIR/

value: Derived from ENCODE donor ENCDO615NVN; https://www.encodeproject.org/ENCDO615NVN/


title: TF ChIP-seq from HepG2 (ENCLB695NEI)

description:
https://www.encodeproject.org/experiments/ENCSR243BPI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR243BPI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR346XJA
encode release date: 2021-09-21
lab: Richard Myers, HAIB
library encode accession: ENCLB695NEI
fragmentation methods: see document

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF219

value: cell line

value: child

value: 15 year

value: Richard Myers, HAIB

value: ATCC

value: hepatocellular carcinoma

value: ENCBS418NXE at ENCODE; https://www.encodeproject.org/ENCBS418NXE/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB882KYX)

description:
https://www.encodeproject.org/experiments/ENCSR243BPI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR243BPI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR346XJA
encode release date: 2021-09-21
lab: Richard Myers, HAIB
library encode accession: ENCLB882KYX
fragmentation methods: see document

value: ENCBS953ZAW at ENCODE; https://www.encodeproject.org/ENCBS953ZAW/


title: GM DNase-seq from K562 (ENCLB236WRZ)

description:
https://www.encodeproject.org/experiments/ENCSR272KNE/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated homozygous DHS deletion in K562.
experiment encode accession: ENCSR272KNE
assay title: GM DNase-seq
assembly: hg19, GRCh38
encode release date: 2018-07-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB236WRZ
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: female

value: adult

value: 53 year

value: John Stamatoyannopoulos, UW

value: John Stamatoyannopoulos

value: chronic myelogenous leukemia (CML)

value: ENCBS080NHQ at ENCODE; https://www.encodeproject.org/ENCBS080NHQ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: RAMPAGE from foreskin keratinocyte (ENCLB608DKH)

description:
https://www.encodeproject.org/experiments/ENCSR215PII/
***************
biological replicate number: 1
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 4.5 of differentiation
experiment encode accession: ENCSR215PII
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR959LTT
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB608DKH
size range: 300-1000

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days

value: foreskin keratinocyte

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 4.5

value: male

value: newborn

value: 2-4 day

value: Paul Khavari, Stanford

value: Paul Khavari

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:4; duration_units:day;

value: Healthy

value: ENCBS473PMP at ENCODE; https://www.encodeproject.org/ENCBS473PMP/

value: Derived from ENCODE donor ENCDO615NVN; https://www.encodeproject.org/ENCDO615NVN/


title: RAMPAGE from foreskin keratinocyte (ENCLB443TIA)

description:
https://www.encodeproject.org/experiments/ENCSR215UXA/
***************
biological replicate number: 1
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 1.0 of differentiation
experiment encode accession: ENCSR215UXA
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR034RPU
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB443TIA
size range: 300-1000

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 0.5 days

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 1.0

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:0.5; duration_units:day;

value: ENCBS982NWD at ENCODE; https://www.encodeproject.org/ENCBS982NWD/


title: RAMPAGE from foreskin keratinocyte (ENCLB462WZS)

description:
https://www.encodeproject.org/experiments/ENCSR215UXA/
***************
biological replicate number: 2
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 1.0 of differentiation
experiment encode accession: ENCSR215UXA
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR034RPU
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB462WZS
size range: 300-1000

value: ENCBS821VLO at ENCODE; https://www.encodeproject.org/ENCBS821VLO/

value: Derived from ENCODE donor ENCDO005EGE; https://www.encodeproject.org/ENCDO005EGE/


title: RAMPAGE from foreskin keratinocyte (ENCLB619QDJ)

description:
https://www.encodeproject.org/experiments/ENCSR215PII/
***************
biological replicate number: 2
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 4.5 of differentiation
experiment encode accession: ENCSR215PII
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR959LTT
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB619QDJ
size range: 300-1000

value: foreskin keratinocyte

value: ENCBS623QHX at ENCODE; https://www.encodeproject.org/ENCBS623QHX/


title: IgM_MGUS_2 [scRNAseq_2_vdj]

city: Pamplona

first: Ibai

last: Goicoechea

state: Navarra

address: Centro de Investigación Médica Aplicada (CIMA) Avenida Pío XII, 55

country: Spain

institute: Universidad de Navarra

data_processing:
Demultiplexing, alignment and gene counts were performed with Cell Ranger Single-Cell Software Suite (v3.01, 10X Genomics).
Genome_build: GRCh38
Supplementary_files_format_and_content: Matrix including gene-count values for each sample

source_name: Bone marrow

extract_protocol:
For scRNAseq, B cells and plasma cells were sorted and viable cells were loaded in the 10x-Genomics Chromium instrument (10X Genomics, USA).
scRNAseq libraries were prepared following 10X-Genomics v2 protocol recommendations (10X Genomics, USA).

tag: subject status

value: patients with IgM MGUS

tag: tissue

value: Bone marrow

tag: sample type

value: BRC sequencing of sample 2


title: IgM_MGUS_3 [scRNAseq_3_vdj]

value: BRC sequencing of sample 3


title: LPL_WM_2 [scRNAseq_5_vdj]

value: patients with LPL/WM

value: BRC sequencing of sample 5


title: LPL_WM_1 [scRNAseq_4_vdj]

value: BRC sequencing of sample 4


title: RAMPAGE from foreskin keratinocyte (ENCLB691IFM)

description:
https://www.encodeproject.org/experiments/ENCSR413FKS/
***************
biological replicate number: 1
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 4.0 of differentiation
experiment encode accession: ENCSR413FKS
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR959LTT
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB691IFM
size range: 300-1000

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 4.0

value: male

value: newborn

value: 2-4 day

value: Paul Khavari, Stanford

value: Paul Khavari

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:3.5; duration_units:day;

value: Healthy

value: ENCBS870NXI at ENCODE; https://www.encodeproject.org/ENCBS870NXI/


title: RAMPAGE from foreskin keratinocyte (ENCLB147KWB)

description:
https://www.encodeproject.org/experiments/ENCSR115BCB/
***************
biological replicate number: 1
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 6.0 of differentiation
experiment encode accession: ENCSR115BCB
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR527SSD
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB147KWB
size range: 300-1000

source_name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days

value: foreskin keratinocyte

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 6.0

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:5.5; duration_units:day;

value: ENCBS389AUD at ENCODE; https://www.encodeproject.org/ENCBS389AUD/

value: Derived from ENCODE donor ENCDO615NVN; https://www.encodeproject.org/ENCDO615NVN/


title: LPL_WM_2 [scRNA-seq]

source_name: Bone marrow_LPL_WM

tag: cell type

value: B and plasma cells

value: Bone marrow

value: patients with LPL/WM


title: LPL_WM_1 [scRNA-seq]


title: IgM_MGUS_2 [scRNA-seq]

source_name: Bone marrow_IgM_MGUS

value: patients with IgM MGUS


title: IgM_MGUS_1 [scRNA-seq]


title: GM DNase-seq from K562 (ENCLB840UNQ)

description:
https://www.encodeproject.org/experiments/ENCSR324UCN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR324UCN
assay title: GM DNase-seq
assembly: hg19, GRCh38
encode release date: 2018-07-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB840UNQ

value: cell line

tag: description

value: TALEN-mediated homozygous DHS deletion in K562.

value: female

value: adult

value: 53 year

value: John Stamatoyannopoulos, UW

value: John Stamatoyannopoulos

value: chronic myelogenous leukemia (CML)

value: ENCBS586CEI at ENCODE; https://www.encodeproject.org/ENCBS586CEI/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: IgM_MGUS_3 [scRNA-seq]


title: RAMPAGE from foreskin keratinocyte (ENCLB252LOK)

description:
https://www.encodeproject.org/experiments/ENCSR115BCB/
***************
biological replicate number: 2
technical replicate number: 1
description: RAMPAGE on primary keratinocytes in day 6.0 of differentiation
experiment encode accession: ENCSR115BCB
assay title: RAMPAGE
assembly: GRCh38
possible controls: ENCSR527SSD
encode release date: 2017-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB252LOK
size range: 300-1000

value: foreskin keratinocyte

value: primary cell

value: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 6.0

tag: biosample encode accession

value: male

value: newborn

value: 2-4 day

value: Paul Khavari, Stanford

value: Paul Khavari

value: treatment_term_id:CHEBI:86158; treatment_term_name:calcium; treatment_type:chemical; duration:5.5; duration_units:day;

value: Healthy

value: ENCBS135YLX at ENCODE; https://www.encodeproject.org/ENCBS135YLX/

value: Derived from ENCODE donor ENCDO005EGE; https://www.encodeproject.org/ENCDO005EGE/


title: IgM_MGUS_1 [scRNAseq_1_vdj]

value: patients with IgM MGUS

value: Bone marrow

value: BRC sequencing of sample 1


title: T2H6_0563_6hour_0day

type: RNA

city: Singapore

first: Zbynek

last: Bozdech

state: Select if applicable

department: Molecular Genetics&Cell Biology

country: Singapore

institute: Nanyang Technological University

hyb_protocol: Equal amounts of labelled sample and reference cDNA were hybridized on the microarray chip using the Agilent hybridization system. Hybridizations were performed for 20 hours at 70°C in a rotating hybridization oven at 10rpm as described in Bozdech, Z., S. Mok & A. P. Gupta, (2013) DNA microarray-based genome-wide analyses of Plasmodium parasites. Methods in molecular biology 923:

scan_protocol: Microarray scanning was done using PowerScanner (Tecan) at 10uM resolution and with autogain PMT adjustments for both channels. Data was acquired using GenePix Pro v6.0 software (Axon Instruments) as described in Mok, S., M. Imwong et al (2011) Artemisinin resistance in Plasmodium falciparum is associated with an altered temporal pattern of transcription. BMC Genomics 12: 391.

data_processing:
Features with flag>0 and with median foreground intensity greater than 1.5 fold median background intensity for either channel passed quality control and were accepted.
Local  background correction using normexp, followed by lowess normalization across all features within array and quantile normalization between arrays were carried out to generate the normalized Log2 gene expression ratios.

organism: Plasmodium falciparum

source_name: P. falciparum field isolate from patient

label_protocol: Reverse transcription and cDNA synthesis were done following modifed Smart-Seq2 protocol (Picelli, S., Faridani, O., Björklund, Å. et al. Full-length RNA-seq from single cells using Smart-seq2. Nat Protoc 9, 171–181 (2014)). Synthesis of aminoallyl-coupled cDNA and labeling of samples with Cy fluorophore (GE Healthcare) were carried out as described in Bozdech, Z., S. Mok & A. P. Gupta, (2013) DNA microarray-based genome-wide analyses of Plasmodium parasites. Methods in molecular biology 923: 189-211.

extract_protocol: Total RNA was extracted using TRIzol (Invitrogen) with chloroform supplemantaiton (Merck) and Direct-Zol-96 kit (Zymo) following manufacturers' instructions.

tag: sample type/stage

value: In vivo, Blood stage

tag: treatment

value: After ACT treatment, 6h

tag: batch

source_name: P. falciparum 3D7 RNA reference pool

tag: culture, stage, strain, composition

value: In vitro culture, asexual blood stage, laboratory strain 3D7, mixture of equal amounts of RNA harvested every 6 hours over the 48-hour parasite's intraerythrocytic life cycle


title: T2H6_0463_6hour_0day


title: T2H6_0467_6hour_0day


title: T2H6_0462_6hour_0day


title: T2H6_0564_6hour_0day


title: T2H6_0461_6hour_0day


title: T2H6_0460_6hour_0day


title: T2H6_0457_6hour_0day


title: T2H6_0361_6hour_0day


title: T2H6_0597_6hour_0day


title: T2H6_0458_6hour_0day


title: T2H6_0593_6hour_0day


title: T2H6_0598_6hour_0day


title: T2H6_0456_6hour_0day


title: T2H6_0232_6hour_0day


title: T2H6_0595_6hour_0day


title: T2H6_0590_6hour_0day


title: T2H6_0284_6hour_0day


title: T2H6_0414_6hour_0day


title: T2H6_0278_6hour_0day


title: T2H6_0033_6hour_0day


title: T2H6_0455_6hour_0day


title: T2H6_0447_6hour_0day


title: T2H6_0037_6hour_0day


title: T2H6_0132_6hour_0day


title: T2H6_0134_6hour_0day


title: T2H6_0356_6hour_0day


title: T2H6_0283_6hour_0day


title: T2H6_0445_6hour_0day


title: T2H6_0454_6hour_0day


title: T2H6_0549_6hour_0day


title: T2H6_0015_6hour_0day


title: T2H6_0412_6hour_0day


title: T2H6_0353_6hour_0day


title: T2H6_0317_6hour_0day


title: T2H6_0410_6hour_0day


title: T2H6_0586_6hour_0day


title: T2H6_0451_6hour_0day


title: T2H6_0587_6hour_0day


title: T2H6_0144_6hour_0day


title: T2H6_0345_6hour_0day


title: T2H6_0315_6hour_0day


title: T2H6_0585_6hour_0day


title: T2H6_0048_6hour_0day


title: T2H6_0155_6hour_0day


title: T2H6_0351_6hour_0day


title: T2H6_0012_6hour_0day


title: T2H6_0191_6hour_0day


title: T2H6_0047_6hour_0day


title: T2H6_0142_6hour_0day


title: T2H6_0188_6hour_0day


title: T2H6_0449_6hour_0day


title: T2H6_0187_6hour_0day


title: T2H6_0108_6hour_0day


title: T2H6_0092_6hour_0day


title: T2H6_0011_6hour_0day


title: T2H6_0253_6hour_0day


title: T2H6_0237_6hour_0day


title: T2H6_0185_6hour_0day


title: T2H6_0183_6hour_0day


title: T2H6_0503_6hour_0day


title: T2H6_0044_6hour_0day


title: T2H6_0238_6hour_0day


title: T2H6_0153_6hour_0day


title: T2H6_0152_6hour_0day


title: T2H6_0236_6hour_0day


title: T2H6_0140_6hour_0day


title: T2H6_0234_6hour_0day


title: T2H6_0583_6hour_0day


title: T2H6_0043_6hour_0day


title: T2H6_0139_6hour_0day


title: T2H6_0090_6hour_0day


title: T2H6_0235_6hour_0day


title: T2H6_0059_6hour_0day


title: T2H6_0041_6hour_0day


title: T2H6_0572_6hour_0day


title: T2H6_0432_6hour_0day


title: T2H6_0151_6hour_0day


title: T2H6_0184_6hour_0day


title: T2H6_0149_6hour_0day


title: T2H6_0040_6hour_0day


title: T2H6_0202_6hour_0day


title: T2H6_0006_6hour_0day


title: T2H6_0295_6hour_0day


title: T2H6_0100_6hour_0day


title: T2H6_0055_6hour_0day


title: T2H6_0245_6hour_0day


title: T2H6_0147_6hour_0day


title: T2H6_0244_6hour_0day


title: T2H6_0099_6hour_0day


title: T2H6_0697_6hour_0day


title: T2H6_0689_6hour_0day


title: T2H6_0691_6hour_0day


title: T2H6_0705_6hour_0day


title: T2H6_0702_6hour_0day


title: T2H6_0247_6hour_0day


title: T2H6_0708_6hour_0day


title: T2H6_0665_6hour_0day


title: T2H6_0681_6hour_0day


title: T2H6_0704_6hour_0day


title: T2H6_0696_6hour_0day


title: T2H6_0464_6hour_0day


title: T2H6_0685_6hour_0day


title: T2H6_0706_6hour_0day


title: T2H6_0679_6hour_0day


title: T2H6_0677_6hour_0day


title: T2H6_0709_6hour_0day


title: T2H6_0710_6hour_0day


title: T2H6_0444_6hour_0day


title: T2H6_0547_6hour_0day


title: T2H6_0343_6hour_0day


title: T2H6_0653_6hour_0day


title: T2H6_0668_6hour_0day


title: T2H6_0401_6hour_0day


title: T2H6_0494_6hour_0day


title: T2H6_0308_6hour_0day


title: T2H6_0543_6hour_0day


title: T2H6_0580_6hour_0day


title: T2H6_0344_6hour_0day


title: T2H6_0647_6hour_0day


title: T2H6_0541_6hour_0day


title: T2H6_0643_6hour_0day


title: T2H6_0632_6hour_0day


title: T2H6_0616_6hour_0day


title: T2H6_0633_6hour_0day


title: T2H6_0639_6hour_0day


title: T2H6_0618_6hour_0day


title: T2H6_0642_6hour_0day


title: T2H6_0617_6hour_0day


title: T2H6_0620_6hour_0day


title: T2H6_0645_6hour_0day


title: T2H6_0637_6hour_0day


title: T2H6_0625_6hour_0day


title: T2H6_0438_6hour_0day


title: T2H6_0634_6hour_0day


title: T2H6_0612_6hour_0day


title: T2H6_0394_6hour_0day


title: T2H6_0614_6hour_0day


title: T2H6_0396_6hour_0day


title: T2H6_0630_6hour_0day


title: T2H6_0488_6hour_0day


title: T2H6_0629_6hour_0day


title: T2H6_0341_6hour_0day


title: T2H6_0613_6hour_0day


title: T2H6_0395_6hour_0day


title: T2H6_0306_6hour_0day


title: T2H6_0577_6hour_0day


title: T2H6_0336_6hour_0day


title: T2H6_0435_6hour_0day


title: T2H6_0337_6hour_0day


title: T2H6_0389_6hour_0day


title: T2H6_0573_6hour_0day


title: T2H6_0386_6hour_0day


title: T2H6_0534_6hour_0day


title: T2H6_0385_6hour_0day


title: T2H6_0243_6hour_0day


title: T2H6_0051_6hour_0day


title: T2H6_0471_6hour_0day


title: T2H6_0421_6hour_0day


title: T2H6_0175_6hour_0day


title: T2H6_0003_6hour_0day


title: T2H6_0145_6hour_0day


title: T2H6_0485_6hour_0day


title: T2H6_0052_6hour_0day


title: T2H6_0081_6hour_0day


title: T2H6_0335_6hour_0day


title: T2H6_0567_6hour_0day


title: T2H6_0376_6hour_0day


title: T2H6_0073_6hour_0day


title: T2H6_0374_6hour_0day


title: T2H6_0127_6hour_0day


title: T2H6_0223_6hour_0day


title: T2H6_0565_6hour_0day


title: T2H6_0001_6hour_0day


title: T2H6_0422_6hour_0day


title: T2H6_0222_6hour_0day


title: T2H6_0075_6hour_0day


title: T2H6_0027_6hour_0day


title: T2H6_0023_6hour_0day


title: T2H6_0269_6hour_0day


title: T2H6_0017_6hour_0day


title: T2H6_0214_6hour_0day


title: T2H6_0124_6hour_0day


title: T2H6_0025_6hour_0day


title: T2H6_0208_6hour_0day


title: T2H6_0217_6hour_0day


title: T2H6_0212_6hour_0day


title: T2H6_0701_6hour_0day


title: T2H6_0703_6hour_0day


title: T2H6_0693_6hour_0day


title: T2H6_0119_6hour_0day


title: T2H6_0699_6hour_0day


title: T2H6_0117_6hour_0day


title: T2H6_0707_6hour_0day


title: T2H6_0694_6hour_0day


title: T2H6_0264_6hour_0day


title: T2H6_0700_6hour_0day


title: T2H6_0161_6hour_0day


title: T2H6_0692_6hour_0day


title: T2H6_0695_6hour_0day


title: T2H6_0686_6hour_0day


title: T2H6_0698_6hour_0day


title: T2H6_0684_6hour_0day


title: T2H6_0687_6hour_0day


title: T2H6_0688_6hour_0day


title: T2H6_0676_6hour_0day


title: T2H6_0683_6hour_0day


title: T2H6_0678_6hour_0day


title: T2H6_0680_6hour_0day


title: T2H6_0682_6hour_0day


title: T2H6_0690_6hour_0day


title: T2H6_0675_6hour_0day


title: T2H6_0671_6hour_0day


title: T2H6_0670_6hour_0day


title: T2H6_0673_6hour_0day


title: T2H6_0667_6hour_0day


title: T2H6_0669_6hour_0day


title: T2H6_0662_6hour_0day


title: T2H6_0674_6hour_0day


title: T2H6_0663_6hour_0day


title: T2H6_0656_6hour_0day


title: T2H6_0658_6hour_0day


title: T2H6_0655_6hour_0day


title: T2H6_0657_6hour_0day


title: T2H6_0664_6hour_0day


title: T2H6_0666_6hour_0day


title: T2H6_0654_6hour_0day


title: T2H6_0659_6hour_0day


title: T2H6_0660_6hour_0day


title: T2H6_0652_6hour_0day


title: T2H6_0651_6hour_0day


title: T2H6_0648_6hour_0day


title: T2H6_0649_6hour_0day


title: T2H6_0636_6hour_0day


title: T2H6_0644_6hour_0day


title: T2H6_0638_6hour_0day


title: T2H6_0646_6hour_0day


title: T2H6_0635_6hour_0day


title: T2H6_0628_6hour_0day


title: T2H6_0627_6hour_0day


title: T2H6_0631_6hour_0day


title: T2H6_0623_6hour_0day


title: T2H6_0622_6hour_0day


title: T2H6_0621_6hour_0day


title: T2H6_0650_6hour_0day


title: T2H6_0619_6hour_0day


title: T2H6_0624_6hour_0day


title: T2H6_0607_6hour_0day


title: T2H6_0610_6hour_0day


title: T2H6_0604_6hour_0day


title: T2H6_0608_6hour_0day


title: T2H6_0615_6hour_0day


title: T2H6_0626_6hour_0day


title: T2H6_0600_6hour_0day


title: T2H6_0606_6hour_0day


title: T2H6_0605_6hour_0day


title: T2H6_0601_6hour_0day


title: T2H6_0603_6hour_0day


title: T2H6_0599_6hour_0day


title: T2H6_0596_6hour_0day


title: T2H6_0591_6hour_0day


title: T2H6_0594_6hour_0day


title: T2H6_0611_6hour_0day


title: T2H6_0592_6hour_0day


title: T2H6_0584_6hour_0day


title: T2H6_0582_6hour_0day


title: T2H6_0588_6hour_0day


title: T2H6_0581_6hour_0day


title: T2H6_0579_6hour_0day


title: T2H6_0589_6hour_0day


title: T2H6_0575_6hour_0day


title: T2H6_0578_6hour_0day


title: T2H6_0576_6hour_0day


title: T2H6_0570_6hour_0day


title: T2H6_0569_6hour_0day


title: T2H6_0571_6hour_0day


title: T2H6_0566_6hour_0day


title: T2H6_0574_6hour_0day


title: T2H6_0558_6hour_0day


title: T2H6_0555_6hour_0day


title: T2H6_0562_6hour_0day


title: T2H6_0554_6hour_0day


title: T2H6_0559_6hour_0day


title: T2H6_0556_6hour_0day


title: T2H6_0553_6hour_0day


title: T2H6_0551_6hour_0day


title: T2H6_0557_6hour_0day


title: T2H6_0545_6hour_0day


title: T2H6_0561_6hour_0day


title: T2H6_0542_6hour_0day


title: T2H6_0550_6hour_0day


title: T2H6_0552_6hour_0day


title: T2H6_0560_6hour_0day


title: T2H6_0536_6hour_0day


title: T2H6_0544_6hour_0day


title: T2H6_0548_6hour_0day


title: T2H6_0539_6hour_0day


title: T2H6_0540_6hour_0day


title: T2H6_0537_6hour_0day


title: T2H6_0546_6hour_0day


title: T2H6_0538_6hour_0day


title: T2H6_0516_6hour_0day


title: T2H6_0531_6hour_0day


title: T2H6_0530_6hour_0day


title: T2H6_0519_6hour_0day


title: T2H6_0529_6hour_0day


title: T2H6_0532_6hour_0day


title: T2H6_0513_6hour_0day


title: T2H6_0512_6hour_0day


title: T2H6_0510_6hour_0day


title: T2H6_0511_6hour_0day


title: T2H6_0507_6hour_0day


title: T2H6_0508_6hour_0day


title: T2H6_0501_6hour_0day


title: T2H6_0506_6hour_0day


title: T2H6_0500_6hour_0day


title: T2H6_0520_6hour_0day


title: T2H6_0509_6hour_0day


title: T2H6_0533_6hour_0day


title: T2H6_0517_6hour_0day


title: T2H6_0514_6hour_0day


title: T2H6_0515_6hour_0day


title: T2H6_0502_6hour_0day


title: T2H6_0504_6hour_0day


title: T2H6_0518_6hour_0day


title: T2H6_0498_6hour_0day


title: T2H6_0499_6hour_0day


title: T2H6_0497_6hour_0day


title: T2H6_0496_6hour_0day


title: T2H6_0493_6hour_0day


title: T2H6_0487_6hour_0day


title: T2H6_0491_6hour_0day


title: T2H6_0489_6hour_0day


title: T2H6_0505_6hour_0day


title: T2H6_0492_6hour_0day


title: T2H6_0490_6hour_0day


title: T2H6_0495_6hour_0day


title: T2H6_0479_6hour_0day


title: T2H6_0481_6hour_0day


title: T2H6_0470_6hour_0day


title: T2H6_0484_6hour_0day


title: T2H6_0486_6hour_0day


title: T2H6_0465_6hour_0day


title: T2H6_0478_6hour_0day


title: T2H6_0480_6hour_0day


title: T2H6_0459_6hour_0day


title: T2H6_0466_6hour_0day


title: T2H6_0469_6hour_0day


title: T2H6_0452_6hour_0day


title: T2H6_0450_6hour_0day


title: T2H6_0468_6hour_0day


title: T2H6_0448_6hour_0day


title: T2H6_0453_6hour_0day


title: T2H6_0483_6hour_0day


title: T2H6_0442_6hour_0day


title: T2H6_0482_6hour_0day


title: T2H6_0443_6hour_0day


title: T2H6_0433_6hour_0day


title: T2H6_0431_6hour_0day


title: T2H6_0429_6hour_0day


title: T2H6_0426_6hour_0day


title: T2H6_0427_6hour_0day


title: T2H6_0416_6hour_0day


title: T2H6_0428_6hour_0day


title: T2H6_0437_6hour_0day


title: T2H6_0415_6hour_0day


title: T2H6_0409_6hour_0day


title: T2H6_0430_6hour_0day


title: T2H6_0436_6hour_0day


title: T2H6_0602_6hour_0day


title: T2H6_0417_6hour_0day


title: T2H6_0413_6hour_0day


title: T2H6_0408_6hour_0day


title: T2H6_0420_6hour_0day


title: T2H6_0411_6hour_0day


title: T2H6_0405_6hour_0day


title: T2H6_0419_6hour_0day


title: T2H6_0418_6hour_0day


title: T2H6_0434_6hour_0day


title: T2H6_0423_6hour_0day


title: T2H6_0402_6hour_0day


title: T2H6_0406_6hour_0day


title: T2H6_0439_6hour_0day


title: T2H6_0404_6hour_0day


title: T2H6_0407_6hour_0day


title: T2H6_0400_6hour_0day


title: T2H6_0397_6hour_0day


title: T2H6_0399_6hour_0day


title: T2H6_0392_6hour_0day


title: T2H6_0398_6hour_0day


title: T2H6_0388_6hour_0day


title: T2H6_0391_6hour_0day


title: T2H6_0387_6hour_0day


title: T2H6_0377_6hour_0day


title: T2H6_0378_6hour_0day


title: T2H6_0379_6hour_0day


title: T2H6_0390_6hour_0day


title: T2H6_0366_6hour_0day


title: T2H6_0384_6hour_0day


title: T2H6_0368_6hour_0day


title: T2H6_0375_6hour_0day


title: T2H6_0363_6hour_0day


title: T2H6_0364_6hour_0day


title: T2H6_0367_6hour_0day


title: T2H6_0372_6hour_0day


title: T2H6_0393_6hour_0day


title: T2H6_0359_6hour_0day


title: T2H6_0358_6hour_0day


title: T2H6_0371_6hour_0day


title: T2H6_0373_6hour_0day


title: T2H6_0365_6hour_0day


title: T2H6_0369_6hour_0day


title: T2H6_0360_6hour_0day


title: T2H6_0349_6hour_0day


title: T2H6_0355_6hour_0day


title: T2H6_0352_6hour_0day


title: T2H6_0346_6hour_0day


title: T2H6_0354_6hour_0day


title: T2H6_0347_6hour_0day


title: T2H6_0334_6hour_0day


title: T2H6_0324_6hour_0day


title: T2H6_0350_6hour_0day


title: T2H6_0332_6hour_0day


title: T2H6_0322_6hour_0day


title: T2H6_0340_6hour_0day


title: T2H6_0342_6hour_0day


title: T2H6_0333_6hour_0day


title: T2H6_0327_6hour_0day


title: T2H6_0348_6hour_0day


title: T2H6_0326_6hour_0day


title: T2H6_0357_6hour_0day


title: T2H6_0370_6hour_0day


title: T2H6_0338_6hour_0day


title: T2H6_0339_6hour_0day


title: T2H6_0325_6hour_0day


title: T2H6_0362_6hour_0day


title: T2H6_0321_6hour_0day


title: T2H6_0320_6hour_0day


title: T2H6_0323_6hour_0day


title: T2H6_0318_6hour_0day


title: T2H6_0319_6hour_0day


title: T2H6_0314_6hour_0day


title: T2H6_0312_6hour_0day


title: T2H6_0310_6hour_0day


title: T2H6_0316_6hour_0day


title: T2H6_0304_6hour_0day


title: T2H6_0298_6hour_0day


title: T2H6_0293_6hour_0day


title: T2H6_0307_6hour_0day


title: T2H6_0289_6hour_0day


title: T2H6_0291_6hour_0day


title: T2H6_0305_6hour_0day


title: T2H6_0292_6hour_0day


title: T2H6_0290_6hour_0day


title: T2H6_0296_6hour_0day


title: T2H6_0285_6hour_0day


title: T2H6_0275_6hour_0day


title: T2H6_0281_6hour_0day


title: T2H6_0309_6hour_0day


title: T2H6_0277_6hour_0day


title: T2H6_0294_6hour_0day


title: T2H6_0276_6hour_0day


title: T2H6_0274_6hour_0day


title: T2H6_0282_6hour_0day


title: T2H6_0279_6hour_0day


title: T2H6_0280_6hour_0day


title: T2H6_0297_6hour_0day


title: T2H6_0272_6hour_0day


title: T2H6_0271_6hour_0day


title: T2H6_0273_6hour_0day


title: T2H6_0266_6hour_0day


title: T2H6_0268_6hour_0day


title: T2H6_0267_6hour_0day


title: T2H6_0255_6hour_0day


title: T2H6_0261_6hour_0day


title: T2H6_0256_6hour_0day


title: T2H6_0252_6hour_0day


title: T2H6_0254_6hour_0day


title: T2H6_0258_6hour_0day


title: T2H6_0249_6hour_0day


title: T2H6_0270_6hour_0day


title: T2H6_0262_6hour_0day


title: T2H6_0240_6hour_0day


title: T2H6_0257_6hour_0day


title: T2H6_0259_6hour_0day


title: T2H6_0250_6hour_0day


title: T2H6_0242_6hour_0day


title: T2H6_0260_6hour_0day


title: T2H6_0263_6hour_0day


title: T2H6_0248_6hour_0day


title: T2H6_0239_6hour_0day


title: T2H6_0230_6hour_0day


title: T2H6_0265_6hour_0day


title: T2H6_0251_6hour_0day


title: T2H6_0241_6hour_0day


title: T2H6_0229_6hour_0day


title: T2H6_0228_6hour_0day


title: T2H6_0246_6hour_0day


title: T2H6_0226_6hour_0day


title: T2H6_0227_6hour_0day


title: T2H6_0224_6hour_0day


title: T2H6_0215_6hour_0day


title: T2H6_0225_6hour_0day


title: T2H6_0220_6hour_0day


title: T2H6_0206_6hour_0day


title: T2H6_0221_6hour_0day


title: T2H6_0207_6hour_0day


title: T2H6_0204_6hour_0day


title: T2H6_0200_6hour_0day


title: T2H6_0209_6hour_0day


title: T2H6_0216_6hour_0day


title: T2H6_0205_6hour_0day


title: T2H6_0211_6hour_0day


title: T2H6_0231_6hour_0day


title: T2H6_0201_6hour_0day


title: T2H6_0197_6hour_0day


title: T2H6_0199_6hour_0day


title: T2H6_0198_6hour_0day


title: T2H6_0213_6hour_0day


title: T2H6_0196_6hour_0day


title: T2H6_0203_6hour_0day


title: T2H6_0218_6hour_0day


title: T2H6_0193_6hour_0day


title: T2H6_0194_6hour_0day


title: T2H6_0195_6hour_0day


title: T2H6_0219_6hour_0day


title: T2H6_0192_6hour_0day


title: T2H6_0210_6hour_0day


title: T2H6_0189_6hour_0day


title: T2H6_0190_6hour_0day


title: T2H6_0170_6hour_0day


title: T2H6_0178_6hour_0day


title: T2H6_0182_6hour_0day


title: T2H6_0168_6hour_0day


title: T2H6_0169_6hour_0day


title: T2H6_0171_6hour_0day


title: T2H6_0186_6hour_0day


title: T2H6_0173_6hour_0day


title: T2H6_0160_6hour_0day


title: T2H6_0313_6hour_0day


title: T2H6_0172_6hour_0day


title: T2H6_0177_6hour_0day


title: T2H6_0154_6hour_0day


title: T2H6_0156_6hour_0day


title: T2H6_0166_6hour_0day


title: T2H6_0163_6hour_0day


title: T2H6_0176_6hour_0day


title: T2H6_0164_6hour_0day


title: T2H6_0157_6hour_0day


title: T2H6_0159_6hour_0day


title: T2H6_0146_6hour_0day


title: T2H6_0165_6hour_0day


title: T2H6_0162_6hour_0day


title: T2H6_0158_6hour_0day


title: T2H6_0150_6hour_0day


title: T2H6_0148_6hour_0day


title: T2H6_0133_6hour_0day


title: T2H6_0143_6hour_0day


title: T2H6_0138_6hour_0day


title: T2H6_0135_6hour_0day


title: T2H6_0137_6hour_0day


title: T2H6_0130_6hour_0day


title: T2H6_0136_6hour_0day


title: T2H6_0141_6hour_0day


title: T2H6_0126_6hour_0day


title: T2H6_0128_6hour_0day


title: T2H6_0112_6hour_0day


title: T2H6_0125_6hour_0day


title: T2H6_0115_6hour_0day


title: T2H6_0131_6hour_0day


title: T2H6_0116_6hour_0day


title: T2H6_0113_6hour_0day


title: T2H6_0114_6hour_0day


title: T2H6_0121_6hour_0day


title: T2H6_0122_6hour_0day


title: T2H6_0110_6hour_0day


title: T2H6_0120_6hour_0day


title: T2H6_0111_6hour_0day


title: T2H6_0118_6hour_0day


title: T2H6_0109_6hour_0day


title: T2H6_0123_6hour_0day


title: T2H6_0107_6hour_0day


title: T2H6_0129_6hour_0day


title: T2H6_0106_6hour_0day


title: T2H6_0105_6hour_0day


title: T2H6_0104_6hour_0day


title: T2H6_0102_6hour_0day


title: T2H6_0103_6hour_0day


title: T2H6_0101_6hour_0day


title: T2H6_0091_6hour_0day


title: T2H6_0093_6hour_0day


title: T2H6_0098_6hour_0day


title: T2H6_0095_6hour_0day


title: T2H6_0094_6hour_0day


title: T2H6_0096_6hour_0day


title: T2H6_0084_6hour_0day


title: T2H6_0089_6hour_0day


title: T2H6_0077_6hour_0day


title: T2H6_0087_6hour_0day


title: T2H6_0083_6hour_0day


title: T2H6_0074_6hour_0day


title: T2H6_0079_6hour_0day


title: T2H6_0080_6hour_0day


title: T2H6_0086_6hour_0day


title: T2H6_0072_6hour_0day


title: T2H6_0082_6hour_0day


title: T2H6_0097_6hour_0day


title: T2H6_0069_6hour_0day


title: T2H6_0078_6hour_0day


title: T2H6_0535_6hour_0day


title: T2H6_0085_6hour_0day


title: T2H6_0071_6hour_0day


title: T2H6_0070_6hour_0day


title: T2H6_0067_6hour_0day


title: T2H6_0063_6hour_0day


title: T2H6_0076_6hour_0day


title: T2H6_0066_6hour_0day


title: T2H6_0064_6hour_0day


title: T2H6_0062_6hour_0day


title: T2H6_0065_6hour_0day


title: T2H6_0068_6hour_0day


title: T2H6_0061_6hour_0day


title: T2H6_0054_6hour_0day


title: T2H6_0060_6hour_0day


title: T2H6_0050_6hour_0day


title: T2H6_0053_6hour_0day


title: T2H6_0056_6hour_0day


title: T2H6_0057_6hour_0day


title: T2H6_0045_6hour_0day


title: T2H6_0046_6hour_0day


title: T2H6_0036_6hour_0day


title: T2H6_0035_6hour_0day


title: T2H6_0030_6hour_0day


title: T2H6_0042_6hour_0day


title: T2H6_0034_6hour_0day


title: T2H6_0058_6hour_0day


title: T2H6_0026_6hour_0day


title: T2H6_0032_6hour_0day


title: T2H6_0049_6hour_0day


title: T2H6_0016_6hour_0day


title: T2H6_0028_6hour_0day


title: T2H6_0029_6hour_0day


title: T2H6_0018_6hour_0day


title: T2H6_0021_6hour_0day


title: T2H6_0020_6hour_0day


title: T2H6_0024_6hour_0day


title: T2H6_0167_6hour_0day


title: T2H6_0022_6hour_0day


title: T2H6_0019_6hour_0day


title: T2H6_0031_6hour_0day


title: T2H6_0009_6hour_0day


title: T2H6_0014_6hour_0day


title: T2H6_0010_6hour_0day


title: T2H6_0013_6hour_0day


title: T2H6_0008_6hour_0day


title: T20371_0hour_0day

value: Prior to ACT treatment, 0h


title: T20516_0hour_0day


title: T20563_0hour_0day


title: T2H6_0005_6hour_0day


title: T2H6_0002_6hour_0day


title: T2H6_0004_6hour_0day


title: T20291_0hour_0day


title: T2H6_0007_6hour_0day


title: T20446_0hour_0day


title: T20549_0hour_0day


title: T20316_0hour_0day


title: T20513_0hour_0day


title: T20356_0hour_0day


title: T20227_0hour_0day


title: T20447_0hour_0day


title: T20237_0hour_0day


title: T20142_0hour_0day


title: T20203_0hour_0day


title: T20403_0hour_0day


title: T20047_0hour_0day


title: T20011_0hour_0day


title: T20449_0hour_0day


title: T20187_0hour_0day


title: T20191_0hour_0day


title: T20583_0hour_0day


title: T20205_0hour_0day


title: T20503_0hour_0day


title: T20140_0hour_0day


title: T20184_0hour_0day


title: T20183_0hour_0day


title: T20236_0hour_0day


title: T20235_0hour_0day


title: T20041_0hour_0day


title: CTRL_H6_9_1_ring_rep55

source_name: P. falciparum lab strain 3D7

value: In vitro culture, Ring stage

value: No treatment


title: CTRL_H6_8_3_ring_rep54


title: T20151_0hour_0day


title: CTRL_H6_9_3_ring_rep57


title: CTRL_H6_8_1_ring_rep52


title: CTRL_H6_7_2_ring_rep50


title: CTRL_H6_7_3_ring_rep51


title: CTRL_H6_6_2_ring_rep47


title: CTRL_H6_5_1_ring_rep43


title: CTRL_H6_4_2_ring_rep41


title: CTRL_H6_5_3_ring_rep45


title: CTRL_H6_4_1_ring_rep40


title: CTRL_H6_6_3_ring_rep48


title: CTRL_H6_7_1_ring_rep49


title: CTRL_H6_6_1_ring_rep46


title: CTRL_H6_5_2_ring_rep44


title: CTRL_H6_8_2_ring_rep53


title: CTRL_H6_9_2_ring_rep56


title: CTRL_H6_4_3_ring_rep42


title: T20139_0hour_0day


title: CTRL_H6_3_1_ring_rep37


title: CTRL_H6_3_2_ring_rep38


title: CTRL_H6_2_3_ring_rep36


title: T20202_0hour_0day


title: CTRL_H6_2_1_ring_rep34


title: CTRL_H6_2_2_ring_rep35


title: CTRL_H6_3_3_ring_rep39


title: CTRL_H6_1_1_ring_rep31


title: CTRL_H6_1_3_ring_rep33


title: CTRL_H6_1_2_ring_rep32


title: CTRL11_3_ring_rep30


title: CTRL9_3_ring_rep27


title: CTRL11_2_ring_rep29


title: CTRL9_1_ring_rep25


title: CTRL9_2_ring_rep26


title: CTRL8_3_ring_rep24


title: CTRL8_2_ring_rep23


title: CTRL8_1_ring_rep22


title: CTRL6_2_ring_rep17


title: CTRL6_1_ring_rep16


title: CTRL7_3_ring_rep21


title: CTRL7_2_ring_rep20


title: CTRL5_3_ring_rep15


title: CTRL3_3_ring_rep9


title: CTRL5_1_ring_rep13


title: CTRL4_3_ring_rep12


title: CTRL4_1_ring_rep10


title: CTRL11_1_ring_rep28


title: CTRL5_2_ring_rep14


title: CTRL2_2_ring_rep5


title: CTRL2_1_ring_rep4


title: CTRL1_3_ring_rep3


title: CTRL6_3_ring_rep18


title: CTRL1_2_ring_rep2


title: CTRL1_1_ring_rep1


title: T20245_0hour_0day


title: CTRL2_3_ring_rep6


title: T20099_0hour_0day


title: T20247_0hour_0day


title: CTRL4_2_ring_rep11


title: CTRL3_2_ring_rep8


title: T20633_0hour_0day


title: T20655_0hour_0day


title: T20444_0hour_0day


title: T20401_0hour_0day


title: CTRL3_1_ring_rep7


title: T20653_0hour_0day


title: T20645_0hour_0day


title: T20580_0hour_0day


title: T20629_0hour_0day


title: T20541_0hour_0day


title: T20691_0hour_0day


title: T20634_0hour_0day


title: T20618_0hour_0day


title: T20494_0hour_0day


title: T20147_0hour_0day


title: T20572_0hour_0day


title: CTRL7_1_ring_rep19


title: T20639_0hour_0day


title: T20617_0hour_0day


title: T20543_0hour_0day


title: T20661_0hour_0day


title: T20630_0hour_0day


title: T20336_0hour_0day


title: T20395_0hour_0day


title: T20488_0hour_0day


title: T20243_0hour_0day


title: T20485_0hour_0day


title: T20386_0hour_0day


title: T20341_0hour_0day


title: T20145_0hour_0day


title: T20573_0hour_0day


title: T20435_0hour_0day


title: T20001_0hour_0day


title: T20277_0hour_0day


title: T20534_0hour_0day


title: T20215_0hour_0day


title: T20216_0hour_0day


title: T20214_0hour_0day


title: T20208_0hour_0day


title: T20709_0hour_0day


title: T20710_0hour_0day


title: T20706_0hour_0day


title: T20708_0hour_0day


title: T20704_0hour_0day


title: T20705_0hour_0day


title: T20079_0hour_0day


title: T20172_0hour_0day


title: T20703_0hour_0day


title: T20221_0hour_0day


title: T20212_0hour_0day


title: T20702_0hour_0day


title: T20700_0hour_0day


title: T20698_0hour_0day


title: T20701_0hour_0day


title: T20707_0hour_0day


title: T20697_0hour_0day


title: T20699_0hour_0day


title: T20695_0hour_0day


title: T20690_0hour_0day


title: T20689_0hour_0day


title: T20688_0hour_0day


title: T20686_0hour_0day


title: T20696_0hour_0day


title: T20694_0hour_0day


title: T20693_0hour_0day


title: T20692_0hour_0day


title: T20685_0hour_0day


title: T20687_0hour_0day


title: T20684_0hour_0day


title: T20681_0hour_0day


title: T20680_0hour_0day


title: T20679_0hour_0day


title: T20678_0hour_0day


title: T20683_0hour_0day


title: T20677_0hour_0day


title: T20676_0hour_0day


title: T20675_0hour_0day


title: T20674_0hour_0day


title: T20672_0hour_0day


title: T20682_0hour_0day


title: T20673_0hour_0day


title: T20671_0hour_0day


title: T20669_0hour_0day


title: T20662_0hour_0day


title: T20668_0hour_0day


title: T20666_0hour_0day


title: T20663_0hour_0day


title: T20657_0hour_0day


title: T20659_0hour_0day


title: T20665_0hour_0day


title: T20654_0hour_0day


title: T20664_0hour_0day


title: T20650_0hour_0day


title: T20648_0hour_0day


title: T20651_0hour_0day


title: T20646_0hour_0day


title: T20658_0hour_0day


title: T20643_0hour_0day


title: T20640_0hour_0day


title: T20637_0hour_0day


title: T20636_0hour_0day


title: T20642_0hour_0day


title: T20638_0hour_0day


title: T20647_0hour_0day


title: T20635_0hour_0day


title: T20632_0hour_0day


title: T20622_0hour_0day


title: T20623_0hour_0day


title: T20624_0hour_0day


title: T20626_0hour_0day


title: T20625_0hour_0day


title: T20631_0hour_0day


title: T20670_0hour_0day


title: T20619_0hour_0day


title: T20627_0hour_0day


title: T20616_0hour_0day


title: T20652_0hour_0day


title: T20667_0hour_0day


title: T20628_0hour_0day


title: T20620_0hour_0day


title: T20644_0hour_0day


title: T20649_0hour_0day


title: T20641_0hour_0day


title: T20615_0hour_0day


title: T20621_0hour_0day


title: T20614_0hour_0day


title: T20613_0hour_0day


title: T20612_0hour_0day


title: T20609_0hour_0day


title: T20610_0hour_0day


title: T20611_0hour_0day


title: T20608_0hour_0day


title: T20660_0hour_0day


title: T20602_0hour_0day


title: T20601_0hour_0day


title: T20598_0hour_0day


title: T20605_0hour_0day


title: T20607_0hour_0day


title: T20597_0hour_0day


title: T20599_0hour_0day


title: T20604_0hour_0day


title: T20606_0hour_0day


title: T20594_0hour_0day


title: T20593_0hour_0day


title: T20603_0hour_0day


title: T20591_0hour_0day


title: T20600_0hour_0day


title: T20596_0hour_0day


title: T20595_0hour_0day


title: T20589_0hour_0day


title: T20592_0hour_0day


title: T20588_0hour_0day


title: T20584_0hour_0day


title: T20218_0hour_0day


title: T20581_0hour_0day


title: T20586_0hour_0day


title: T20585_0hour_0day


title: T20590_0hour_0day


title: T20582_0hour_0day


title: T20587_0hour_0day


title: T20577_0hour_0day


title: T20578_0hour_0day


title: T20579_0hour_0day


title: T20576_0hour_0day


title: T20567_0hour_0day


title: T20555_0hour_0day


title: T20561_0hour_0day


title: T20562_0hour_0day


title: T20570_0hour_0day


title: T20560_0hour_0day


title: T20556_0hour_0day


title: T20566_0hour_0day


title: T20557_0hour_0day


title: T20564_0hour_0day


title: T20559_0hour_0day


title: T20565_0hour_0day


title: T20552_0hour_0day


title: T20551_0hour_0day


title: T20558_0hour_0day


title: T20553_0hour_0day


title: T20571_0hour_0day


title: T20550_0hour_0day


title: T20574_0hour_0day


title: T20546_0hour_0day


title: T20569_0hour_0day


title: T20575_0hour_0day


title: T20548_0hour_0day


title: T20545_0hour_0day


title: T20554_0hour_0day


title: T20542_0hour_0day


title: T20544_0hour_0day


title: T20547_0hour_0day


title: T20538_0hour_0day


title: T20656_0hour_0day


title: T20533_0hour_0day


title: T20539_0hour_0day


title: T20536_0hour_0day


title: T20530_0hour_0day


title: T20532_0hour_0day


title: T20535_0hour_0day


title: T20531_0hour_0day


title: T20540_0hour_0day


title: T20520_0hour_0day


title: T20537_0hour_0day


title: T20519_0hour_0day


title: T20518_0hour_0day


title: T20517_0hour_0day


title: T20515_0hour_0day


title: T20529_0hour_0day


title: T20512_0hour_0day


title: T20514_0hour_0day


title: T20508_0hour_0day


title: T20507_0hour_0day


title: T20511_0hour_0day


title: T20504_0hour_0day


title: T20506_0hour_0day


title: T20501_0hour_0day


title: T20505_0hour_0day


title: T20509_0hour_0day


title: T20500_0hour_0day


title: T20502_0hour_0day


title: T20496_0hour_0day


title: T20497_0hour_0day


title: T20499_0hour_0day


title: T20498_0hour_0day


title: T20489_0hour_0day


title: T20495_0hour_0day


title: T20493_0hour_0day


title: T20491_0hour_0day


title: T20490_0hour_0day


title: T20492_0hour_0day


title: T20484_0hour_0day


title: T20487_0hour_0day


title: T20480_0hour_0day


title: T20479_0hour_0day


title: T20483_0hour_0day


title: T20481_0hour_0day


title: T20478_0hour_0day


title: T20471_0hour_0day


title: T20486_0hour_0day


title: T20466_0hour_0day


title: T20470_0hour_0day


title: T20464_0hour_0day


title: T20468_0hour_0day


title: T20465_0hour_0day


title: T20469_0hour_0day


title: T20467_0hour_0day


title: T20482_0hour_0day


title: T20463_0hour_0day


title: T20462_0hour_0day


title: T20458_0hour_0day


title: T20510_0hour_0day


title: T20460_0hour_0day


title: T20455_0hour_0day


title: T20454_0hour_0day


title: T20459_0hour_0day


title: T20453_0hour_0day


title: T20452_0hour_0day


title: T20448_0hour_0day


title: T20456_0hour_0day


title: T20450_0hour_0day


title: T20461_0hour_0day


title: T20443_0hour_0day


title: T20457_0hour_0day


title: T20451_0hour_0day


title: T20438_0hour_0day


title: T20431_0hour_0day


title: T20434_0hour_0day


title: T20437_0hour_0day


title: T20442_0hour_0day


title: T20439_0hour_0day


title: T20440_0hour_0day


title: T20441_0hour_0day


title: T20429_0hour_0day


title: T20430_0hour_0day


title: T20436_0hour_0day


title: T20445_0hour_0day


title: T20432_0hour_0day


title: T20426_0hour_0day


title: T20427_0hour_0day


title: T20428_0hour_0day


title: T20423_0hour_0day


title: T20419_0hour_0day


title: T20418_0hour_0day


title: T20420_0hour_0day


title: T20421_0hour_0day


title: T20415_0hour_0day


title: T20433_0hour_0day


title: T20408_0hour_0day


title: T20414_0hour_0day


title: T20410_0hour_0day


title: T20409_0hour_0day


title: T20413_0hour_0day


title: T20411_0hour_0day


title: T20412_0hour_0day


title: T20404_0hour_0day


title: T20407_0hour_0day


title: T20416_0hour_0day


title: T20400_0hour_0day


title: T20417_0hour_0day


title: T20392_0hour_0day


title: T20406_0hour_0day


title: T20402_0hour_0day


title: T20394_0hour_0day


title: T20399_0hour_0day


title: T20396_0hour_0day


title: T20405_0hour_0day


title: T20397_0hour_0day


title: T20393_0hour_0day


title: T20391_0hour_0day


title: T20389_0hour_0day


title: T20376_0hour_0day


title: T20379_0hour_0day


title: T20377_0hour_0day


title: T20384_0hour_0day


title: T20388_0hour_0day


title: T20374_0hour_0day


title: T20375_0hour_0day


title: T20378_0hour_0day


title: T20372_0hour_0day


title: T20369_0hour_0day


title: T20385_0hour_0day


title: T20368_0hour_0day


title: T20370_0hour_0day


title: T20373_0hour_0day


title: T20387_0hour_0day


title: T20364_0hour_0day


title: T20367_0hour_0day


title: T20363_0hour_0day


title: T20362_0hour_0day


title: T20390_0hour_0day


title: T20360_0hour_0day


title: T20365_0hour_0day


title: T20359_0hour_0day


title: T20358_0hour_0day


title: T20366_0hour_0day


title: T20398_0hour_0day


title: T20361_0hour_0day


title: T20354_0hour_0day


title: T20357_0hour_0day


title: T20353_0hour_0day


title: T20352_0hour_0day


title: T20351_0hour_0day


title: T20346_0hour_0day


title: T20345_0hour_0day


title: T20349_0hour_0day


title: T20343_0hour_0day


title: T20342_0hour_0day


title: T20350_0hour_0day


title: T20347_0hour_0day


title: T20355_0hour_0day


title: T20340_0hour_0day


title: T20339_0hour_0day


title: T20335_0hour_0day


title: T20337_0hour_0day


title: T20338_0hour_0day


title: T20348_0hour_0day


title: T20334_0hour_0day


title: T20325_0hour_0day


title: T20326_0hour_0day


title: T20344_0hour_0day


title: T20323_0hour_0day


title: T20324_0hour_0day


title: T20327_0hour_0day


title: T20333_0hour_0day


title: T20332_0hour_0day


title: T20320_0hour_0day


title: T20317_0hour_0day


title: T20321_0hour_0day


title: T20319_0hour_0day


title: T20315_0hour_0day


title: T20314_0hour_0day


title: T20313_0hour_0day


title: T20311_0hour_0day


title: T20309_0hour_0day


title: T20308_0hour_0day


title: T20310_0hour_0day


title: T20322_0hour_0day


title: T20312_0hour_0day


title: T20307_0hour_0day


title: T20306_0hour_0day


title: T20297_0hour_0day


title: T20318_0hour_0day


title: T20293_0hour_0day


title: T20296_0hour_0day


title: T20294_0hour_0day


title: T20304_0hour_0day


title: T20290_0hour_0day


title: T20305_0hour_0day


title: T20298_0hour_0day


title: T20295_0hour_0day


title: T20292_0hour_0day


title: T20286_0hour_0day


title: T20289_0hour_0day


title: T20288_0hour_0day


title: T20287_0hour_0day


title: T20278_0hour_0day


title: T20283_0hour_0day


title: T20284_0hour_0day


title: T20281_0hour_0day


title: T20282_0hour_0day


title: T20276_0hour_0day


title: T20280_0hour_0day


title: T20285_0hour_0day


title: T20274_0hour_0day


title: T20279_0hour_0day


title: T20275_0hour_0day


title: T20272_0hour_0day


title: T20273_0hour_0day


title: T20270_0hour_0day


title: T20271_0hour_0day


title: T20264_0hour_0day


title: T20266_0hour_0day


title: T20269_0hour_0day


title: T20267_0hour_0day


title: T20261_0hour_0day


title: T20257_0hour_0day


title: T20268_0hour_0day


title: T20263_0hour_0day


title: T20262_0hour_0day


title: T20265_0hour_0day


title: T20256_0hour_0day


title: T20255_0hour_0day


title: T20258_0hour_0day


title: T20253_0hour_0day


title: T20252_0hour_0day


title: T20239_0hour_0day


title: T20250_0hour_0day


title: T20251_0hour_0day


title: T20248_0hour_0day


title: T20246_0hour_0day


title: T20254_0hour_0day


title: T20244_0hour_0day


title: T20259_0hour_0day


title: T20240_0hour_0day


title: T20241_0hour_0day


title: T20260_0hour_0day


title: T20249_0hour_0day


title: T20238_0hour_0day


title: T20232_0hour_0day


title: T20242_0hour_0day


title: T20233_0hour_0day


title: T20231_0hour_0day


title: T20230_0hour_0day


title: T20234_0hour_0day


title: T20223_0hour_0day


title: T20228_0hour_0day


title: T20226_0hour_0day


title: T20229_0hour_0day


title: T20222_0hour_0day


title: T20225_0hour_0day


title: T20201_0hour_0day


title: T20206_0hour_0day


title: T20217_0hour_0day


title: T20207_0hour_0day


title: T20210_0hour_0day


title: T20200_0hour_0day


title: T20220_0hour_0day


title: T20211_0hour_0day


title: T20204_0hour_0day


title: T20213_0hour_0day


title: T20209_0hour_0day


title: T20199_0hour_0day


title: T20197_0hour_0day


title: T20195_0hour_0day


title: T20219_0hour_0day


title: T20196_0hour_0day


title: T20194_0hour_0day


title: T20198_0hour_0day


title: T20193_0hour_0day


title: T20189_0hour_0day


title: T20188_0hour_0day


title: T20185_0hour_0day


title: T20190_0hour_0day


title: T20182_0hour_0day


title: T20186_0hour_0day


title: T20181_0hour_0day


title: T20180_0hour_0day


title: T20176_0hour_0day


title: T20179_0hour_0day


title: T20192_0hour_0day


title: T20177_0hour_0day


title: T20168_0hour_0day


title: T20169_0hour_0day


title: T20171_0hour_0day


title: T20167_0hour_0day


title: T20175_0hour_0day


title: T20164_0hour_0day


title: T20162_0hour_0day


title: T20166_0hour_0day


title: T20173_0hour_0day


title: T20174_0hour_0day


title: T20161_0hour_0day


title: T20170_0hour_0day


title: T20178_0hour_0day


title: T20163_0hour_0day


title: T20165_0hour_0day


title: T20160_0hour_0day


title: T20159_0hour_0day


title: T20158_0hour_0day


title: T20157_0hour_0day


title: T20152_0hour_0day


title: T20149_0hour_0day


title: T20154_0hour_0day


title: T20146_0hour_0day


title: T20150_0hour_0day


title: T20155_0hour_0day


title: T20144_0hour_0day


title: T20148_0hour_0day


title: T20141_0hour_0day


title: T20143_0hour_0day


title: T20153_0hour_0day


title: T20128_0hour_0day


title: T20133_0hour_0day


title: T20156_0hour_0day


title: T20134_0hour_0day


title: T20132_0hour_0day


title: T20131_0hour_0day


title: T20129_0hour_0day


title: T20130_0hour_0day


title: T20137_0hour_0day


title: T20135_0hour_0day


title: T20127_0hour_0day


title: T20136_0hour_0day


title: T20126_0hour_0day


title: T20125_0hour_0day


title: T20124_0hour_0day


title: T20138_0hour_0day


title: T20115_0hour_0day


title: T20121_0hour_0day


title: T20120_0hour_0day


title: T20117_0hour_0day


title: T20122_0hour_0day


title: T20118_0hour_0day


title: T20116_0hour_0day


title: T20114_0hour_0day


title: T20113_0hour_0day


title: T20119_0hour_0day


title: T20112_0hour_0day


title: T20108_0hour_0day


title: T20123_0hour_0day


title: T20106_0hour_0day


title: T20104_0hour_0day


title: T20111_0hour_0day


title: T20096_0hour_0day


title: T20103_0hour_0day


title: T20107_0hour_0day


title: T20110_0hour_0day


title: T20095_0hour_0day


title: T20224_0hour_0day


title: T20102_0hour_0day


title: T20105_0hour_0day


title: T20100_0hour_0day


title: T20109_0hour_0day


title: T20097_0hour_0day


title: T20101_0hour_0day


title: T20098_0hour_0day


title: T20087_0hour_0day


title: T20088_0hour_0day


title: T20086_0hour_0day


title: T20092_0hour_0day


title: T20090_0hour_0day


title: T20091_0hour_0day


title: T20094_0hour_0day


title: T20085_0hour_0day


title: T20093_0hour_0day


title: T20083_0hour_0day


title: T20082_0hour_0day


title: T20089_0hour_0day


title: T20076_0hour_0day


title: T20080_0hour_0day


title: T20074_0hour_0day


title: T20081_0hour_0day


title: T20073_0hour_0day


title: T20078_0hour_0day


title: T20075_0hour_0day


title: T20077_0hour_0day


title: T20072_0hour_0day


title: T20066_0hour_0day


title: T20084_0hour_0day


title: T20071_0hour_0day


title: T20069_0hour_0day


title: T20070_0hour_0day


title: T20068_0hour_0day


title: T20058_0hour_0day


title: T20056_0hour_0day


title: T20059_0hour_0day


title: T20064_0hour_0day


title: T20061_0hour_0day


title: T20062_0hour_0day


title: T20060_0hour_0day


title: T20067_0hour_0day


title: T20065_0hour_0day


title: T20053_0hour_0day


title: T20054_0hour_0day


title: T20055_0hour_0day


title: T20050_0hour_0day


title: T20048_0hour_0day


title: T20057_0hour_0day


title: T20063_0hour_0day


title: T20045_0hour_0day


title: T20422_0hour_0day


title: T20036_0hour_0day


title: T20052_0hour_0day


title: T20049_0hour_0day


title: T20038_0hour_0day


title: T20042_0hour_0day


title: T20051_0hour_0day


title: T20040_0hour_0day


title: T20043_0hour_0day


title: T20046_0hour_0day


title: T20039_0hour_0day


title: T20044_0hour_0day


title: T20034_0hour_0day


title: T20037_0hour_0day


title: T20032_0hour_0day


title: T20033_0hour_0day


title: T20030_0hour_0day


title: T20031_0hour_0day


title: T20027_0hour_0day


title: T20029_0hour_0day


title: T20026_0hour_0day


title: T20028_0hour_0day


title: T20025_0hour_0day


title: T20024_0hour_0day


title: T20035_0hour_0day


title: T20022_0hour_0day


title: T20016_0hour_0day


title: T20020_0hour_0day


title: T20019_0hour_0day


title: T20015_0hour_0day


title: T20021_0hour_0day


title: T20010_0hour_0day


title: T20004_0hour_0day


title: T20007_0hour_0day


title: microRNA-seq from adrenal gland (ENCLB989WSA)

description:
https://www.encodeproject.org/experiments/ENCSR994IRA/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND 2 months female adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR994IRA
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-07-27
lab: Ali Mortazavi, UCI
library encode accession: ENCLB989WSA
size range: <30

source_name: Mus musculus strain B6CASTF1/J female (2 months) adrenal gland tissue

value: adrenal gland

value: tissue

value: B6Cast F1 PND 2 months Female 03 adrenal gland for Wold core

tag: Sex

value: female

tag: dev stage

value: unknown

tag: age

value: 2 month

tag: lab

value: Barbara Wold, Caltech

tag: source

value: The Jackson Laboratory

value: ENCBS393LTW at ENCODE; https://www.encodeproject.org/ENCBS393LTW/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: T20017_0hour_0day


title: T20014_0hour_0day


title: T20009_0hour_0day


title: T20012_0hour_0day


title: T20006_0hour_0day


title: T20018_0hour_0day


title: T20023_0hour_0day


title: T20005_0hour_0day


title: microRNA-seq from adrenal gland (ENCLB682DFJ)

description:
https://www.encodeproject.org/experiments/ENCSR444NXP/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND 2 months male adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR444NXP
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-07-27
lab: Ali Mortazavi, UCI
library encode accession: ENCLB682DFJ
size range: <30

source_name: Mus musculus strain B6CASTF1/J male (2 months) adrenal gland tissue

value: B6Cast F1 PND 2 months Male 03 adrenal gland for Wold core

value: male

tag: link

value: ENCBS110BLI at ENCODE; https://www.encodeproject.org/ENCBS110BLI/


title: microRNA-seq from adrenal gland (ENCLB379RUP)

description:
https://www.encodeproject.org/experiments/ENCSR771FRL/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND 18-20 months male adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR771FRL
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-07-27
lab: Ali Mortazavi, UCI
library encode accession: ENCLB379RUP
size range: <30

source_name: Mus musculus strain B6CASTF1/J male (18-20 months) adrenal gland tissue

value: adrenal gland_B6Cast F1 PND 18-20 months_Male 03_ENC4_cDNA462

value: 18-20 month

value: ENCBS999WBI at ENCODE; https://www.encodeproject.org/ENCBS999WBI/


title: microRNA-seq from adrenal gland (ENCLB236GRF)

description:
https://www.encodeproject.org/experiments/ENCSR482GEJ/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND 18-20 months female adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR482GEJ
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-07-27
lab: Ali Mortazavi, UCI
library encode accession: ENCLB236GRF
size range: <30

source_name: Mus musculus strain B6CASTF1/J female (18-20 months) adrenal gland tissue

value: adrenal gland_B6Cast F1 PND 18-20 months_Female 03 _ENC4_cDNA463

value: ENCBS180MQS at ENCODE; https://www.encodeproject.org/ENCBS180MQS/


title: microRNA-seq from adrenal gland (ENCLB255JML)

description:
https://www.encodeproject.org/experiments/ENCSR482GEJ/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND 18-20 months female adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR482GEJ
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-07-27
lab: Ali Mortazavi, UCI
library encode accession: ENCLB255JML
size range: <30

value: adrenal gland

value: tissue

value: adrenal gland_B6Cast F1 PND 18-20 months_Female 04 _ENC4_cDNA464

value: ENCBS703MDQ at ENCODE; https://www.encodeproject.org/ENCBS703MDQ/


title: T20008_0hour_0day

value: In vivo, Blood stage

value: Prior to ACT treatment, 0h

value: In vitro culture, asexual blood stage, laboratory strain 3D7, mixture of equal amounts of RNA harvested every 6 hours over the 48-hour parasite's intraerythrocytic life cycle


title: microRNA-seq from adrenal gland (ENCLB076BUU)

description:
https://www.encodeproject.org/experiments/ENCSR444NXP/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND 2 months male adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR444NXP
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-07-27
lab: Ali Mortazavi, UCI
library encode accession: ENCLB076BUU
size range: <30

value: B6Cast F1 PND 2 months Male 04 adrenal gland for Wold core

value: unknown

value: 2 month

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS886TIW at ENCODE; https://www.encodeproject.org/ENCBS886TIW/


title: microRNA-seq from adrenal gland (ENCLB444SPN)

description:
https://www.encodeproject.org/experiments/ENCSR631RPT/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND10 female adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR631RPT
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB444SPN
size range: <30

source_name: Mus musculus strain B6CASTF1/J female (10 days) adrenal gland tissue

value: B6Cast F1 PND10 Female 03 adrenal gland for Wold core

value: female

value: 10 day

value: ENCBS824HLN at ENCODE; https://www.encodeproject.org/ENCBS824HLN/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: microRNA-seq from adrenal gland (ENCLB277DTG)

description:
https://www.encodeproject.org/experiments/ENCSR699RYY/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND36 female adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR699RYY
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB277DTG
size range: <30

source_name: Mus musculus strain B6CASTF1/J female (36 days) adrenal gland tissue

value: adrenal gland

value: tissue

value: B6Cast F1 PND36 Female 04 adrenal gland for Wold core

value: 36 day

value: ENCBS668OIM at ENCODE; https://www.encodeproject.org/ENCBS668OIM/


title: microRNA-seq from adrenal gland (ENCLB915CXR)

description:
https://www.encodeproject.org/experiments/ENCSR699RYY/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation mouse PND36 female adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR699RYY
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB915CXR
size range: <30

value: B6Cast F1 PND36 Female 03 adrenal gland for Wold core

value: ENCBS681BGW at ENCODE; https://www.encodeproject.org/ENCBS681BGW/


title: microRNA-seq from adrenal gland (ENCLB680TOU)

description:
https://www.encodeproject.org/experiments/ENCSR994IRA/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND 2 months female adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR994IRA
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-07-27
lab: Ali Mortazavi, UCI
library encode accession: ENCLB680TOU
size range: <30

value: B6Cast F1 PND 2 months Female 04 adrenal gland for Wold core

value: unknown

value: ENCBS838VBH at ENCODE; https://www.encodeproject.org/ENCBS838VBH/


title: T20003_0hour_0day

value: In vivo, Blood stage

value: Prior to ACT treatment, 0h

value: In vitro culture, asexual blood stage, laboratory strain 3D7, mixture of equal amounts of RNA harvested every 6 hours over the 48-hour parasite's intraerythrocytic life cycle


title: microRNA-seq from adrenal gland (ENCLB849QGD)

description:
https://www.encodeproject.org/experiments/ENCSR631RPT/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND10 female adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR631RPT
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB849QGD
size range: <30

value: B6Cast F1 PND10 Female 04 adrenal gland for Wold core

value: female

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS622FYD at ENCODE; https://www.encodeproject.org/ENCBS622FYD/


title: T20002_0hour_0day


title: PD 2

city: Los Angeles

first: Jie

last: Lei

address: 2250 Alcazar Street, CSA 103

department: Ostrow School of Dentistry

institute: University of Southern California

data_processing:
The quality of RNA samples was assessed using an Agilent 2100 Bioanalyzer
The samples used for sequencing had RNA integrity (RIN) numbers >6.0
Single-end reads with 75 cycles were carried out on NextSeq500 for 3 pairs of samples
Raw reads were trimmed, aligned to the mm10 genome using STAR (version 2.6.1d; https://github.com/alexdobin/STAR/releases), and normalized using CPM
Differential expression was estimated using the gene set analysis (GSA) method.Values of P≤0.05 and fold change < −1.2 or >1.2 across groups were considered significant
Genome_build: mm10 genome
Supplementary_files_format_and_content: tab-delimited text files include lognormal with shrinkage mean value for each feature in individual sample.

source_name: mandibular condyle

growth_protocol: Mice were housed in pathogen-free conditions.

extract_protocol:
The subchondral bone of the mandibular condyle on the operated joints was dissected for RNA isolation with an RNeasy Micro Kit (QIAGEN; #74004)
The cDNA library preparation and sequencing were conducted in the Technology Center for Genomics & Bioinformatics at the University of California, Los Angeles

treatment_protocol: The mice were anesthetized with isoflurane and sham surgery or partial discectomy was performed on the TMJ unilaterally

tag: strain

value: wild type

value: subchondral bone of mandibular condyle

value: Partial discectomy


title: microRNA-seq from adrenal gland (ENCLB442PAU)

description:
https://www.encodeproject.org/experiments/ENCSR375OPO/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND25 female adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR375OPO
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB442PAU
size range: <30

source_name: Mus musculus strain B6CASTF1/J female (25 days) adrenal gland tissue

value: adrenal gland

value: tissue

value: B6Cast F1 PND25 Female 04 adrenal gland for Wold core

value: 25 day

value: ENCBS214IJR at ENCODE; https://www.encodeproject.org/ENCBS214IJR/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: PD 3


title: microRNA-seq from adrenal gland (ENCLB393ZJN)

description:
https://www.encodeproject.org/experiments/ENCSR359KCJ/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation mouse PND4 male adrenals microRNA-seq from Mortazavi
experiment encode accession: ENCSR359KCJ
assay title: microRNA-seq
assembly: mm10
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB393ZJN
size range: <30

source_name: Mus musculus strain B6CASTF1/J male (4 days) adrenal gland tissue

value: B6Cast F1 PND4 Male 04 adrenal gland for Wold core

value: male

value: unknown

value: 4 day

value: ENCBS623ZPY at ENCODE; https://www.encodeproject.org/ENCBS623ZPY/