title: Histone ChIP-seq from middle frontal area 46 (ENCLB336EBR)

description:
https://www.encodeproject.org/experiments/ENCSR532SRK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on middle frontal area 46 tissue male adult (83 years).
experiment encode accession: ENCSR532SRK
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR058XPK
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB336EBR
size range: 200-600


title: Histone ChIP-seq from colonic mucosa (ENCLB358GBW)

status: Public on Nov 04 2021

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR525HKY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 ChIP-seq on colonic mucosa tissue female adult (41 years)
experiment encode accession: ENCSR525HKY
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR557RJE
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB358GBW
size range: 200-600

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens female adult (41 years) colonic mucosa tissue

tag: antibody

value: colonic mucosa

value: tissue

tag: biosample encode accession

tag: Sex

value: female

tag: dev stage

value: adult

tag: age

value: 41 year

tag: lab

value: Bradley Bernstein, Broad

tag: source

value: Shin Lin

tag: health state

value: DM:no; HTN:no; CAD:no

tag: link

value: ENCBS312CUX at ENCODE; https://www.encodeproject.org/ENCBS312CUX/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: TF ChIP-seq from middle frontal area 46 (ENCLB942MWV)

description:
https://www.encodeproject.org/experiments/ENCSR525VXD/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on middle frontal area 46 tissue female adult (90 or above years)
experiment encode accession: ENCSR525VXD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR836KPL
encode release date: 2021-07-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB942MWV
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue

value: CTCF

value: middle frontal area 46

value: 90 or above year

value: Rush University

value: ENCBS464LBN at ENCODE; https://www.encodeproject.org/ENCBS464LBN/

value: Derived from ENCODE donor ENCDO006DAA; https://www.encodeproject.org/ENCDO006DAA/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB899SDD)

description:
https://www.encodeproject.org/experiments/ENCSR423WXD/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on middle frontal area 46 tissue male adult (87 years) with Alzheimer's disease, Cognitive impairment
experiment encode accession: ENCSR423WXD
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR534KYQ
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB899SDD
size range: 200-600

source_name: Homo sapiens male adult (87 years) with Alzheimer's disease, Cognitive impairment; middle frontal area 46 tissue

value: male

value: 87 year

value: ENCBS584OEO at ENCODE; https://www.encodeproject.org/ENCBS584OEO/

value: Derived from ENCODE donor ENCDO776JEI; https://www.encodeproject.org/ENCDO776JEI/


title: Control Mint-ChIP-seq from regulatory T cell (ENCLB151XCH)

description:
https://www.encodeproject.org/experiments/ENCSR528KGH/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on regulatory T cell male adult (42 years)
experiment encode accession: ENCSR528KGH
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB151XCH

source_name: Homo sapiens male adult (42 years) regulatory T primary cell

value: regulatory T cell

value: primary cell

value: adult

value: 42 year

value: John Stamatoyannopoulos

value: ENCBS164RWQ at ENCODE; https://www.encodeproject.org/ENCBS164RWQ/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: Histone ChIP-seq from heart right ventricle (ENCLB149FWZ)

description:
https://www.encodeproject.org/experiments/ENCSR700ZDF/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on heart right ventricle tissue male adult (66 years).
experiment encode accession: ENCSR700ZDF
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR898WPF
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB149FWZ
size range: 200-600

source_name: Homo sapiens male adult (66 years) heart right ventricle tissue

value: heart right ventricle

value: tissue

value: ischemic (EF 29% LVEDD 5.4; RV normal size, mild dysfunction)

value: 66 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: ENCBS948AHG at ENCODE; https://www.encodeproject.org/ENCBS948AHG/

value: Derived from ENCODE donor ENCDO926KEV; https://www.encodeproject.org/ENCDO926KEV/


title: Control Mint-ChIP-seq from regulatory T cell (ENCLB329GKJ)

description:
https://www.encodeproject.org/experiments/ENCSR528KGH/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on regulatory T cell male adult (42 years)
experiment encode accession: ENCSR528KGH
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB329GKJ

value: male


title: TF ChIP-seq from heart right ventricle (ENCLB812DBP)

description:
https://www.encodeproject.org/experiments/ENCSR587KPW/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF TF ChIP-seq on heart right ventricle tissue male adult (61 years).
experiment encode accession: ENCSR587KPW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR891YGO
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB812DBP
size range: 200-600

source_name: Homo sapiens male adult (61 years) heart right ventricle tissue

value: CTCF

value: 61 year

value: nonischemic (EF 11% LVEDD 7.7; RV severe dilation, severe dysfunction)

value: ENCBS175LFH at ENCODE; https://www.encodeproject.org/ENCBS175LFH/

value: Derived from ENCODE donor ENCDO808ASZ; https://www.encodeproject.org/ENCDO808ASZ/


title: microRNA-seq from mucosa of descending colon (ENCLB211WKK)

description:
https://www.encodeproject.org/experiments/ENCSR589PZB/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation human tissue W76 mucosa descending colon microRNA-seq from Mortazavi
experiment encode accession: ENCSR589PZB
assay title: microRNA-seq
assembly: GRCh38
encode release date: 2021-07-27
lab: Ali Mortazavi, UCI
library encode accession: ENCLB211WKK
size range: <30

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens male adult (40 years) mucosa of descending colon tissue, preserved by flash-freezing

value: mucosa of descending colon

value: adult

value: 40 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: DM:no; HTN:yes; CAD:no

value: ENCBS105TFS at ENCODE; https://www.encodeproject.org/ENCBS105TFS/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: TF ChIP-seq from middle frontal area 46 (ENCLB780IBS)

description:
https://www.encodeproject.org/experiments/ENCSR525VXD/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on middle frontal area 46 tissue female adult (90 or above years)
experiment encode accession: ENCSR525VXD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR836KPL
encode release date: 2021-07-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB780IBS
size range: 200-600

value: middle frontal area 46

value: tissue

value: female

value: 90 or above year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS464LBN at ENCODE; https://www.encodeproject.org/ENCBS464LBN/

value: Derived from ENCODE donor ENCDO006DAA; https://www.encodeproject.org/ENCDO006DAA/


title: TF ChIP-seq from heart right ventricle (ENCLB931CII)

description:
https://www.encodeproject.org/experiments/ENCSR587KPW/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF TF ChIP-seq on heart right ventricle tissue male adult (61 years).
experiment encode accession: ENCSR587KPW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR891YGO
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB931CII
size range: 200-600

value: CTCF

value: heart right ventricle

value: male

value: 61 year

value: Shin Lin

value: nonischemic (EF 11% LVEDD 7.7; RV severe dilation, severe dysfunction)

value: ENCBS175LFH at ENCODE; https://www.encodeproject.org/ENCBS175LFH/

value: Derived from ENCODE donor ENCDO808ASZ; https://www.encodeproject.org/ENCDO808ASZ/


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB597BDC)

description:
https://www.encodeproject.org/experiments/ENCSR520QDR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on CD4-positive, CD25-positive, alpha-beta regulatory T cell with multiple sclerosis..
experiment encode accession: ENCSR520QDR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR918BGN
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB597BDC

source_name: Homo sapiens with multiple sclerosis; CD4-positive, CD25-positive, alpha-beta regulatory T primary cell, preserved by cryopreservation

value: primary cell

tag: description

value: Treg CD3+ CD4+ CD8- CD25+ CD127-

value: not collected

value: unknown

value: David Hafler

value: multiple sclerosis

value: ENCBS595ZYR at ENCODE; https://www.encodeproject.org/ENCBS595ZYR/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB096JDM)

description:
https://www.encodeproject.org/experiments/ENCSR424IJM/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with Cognitive impairment.
experiment encode accession: ENCSR424IJM
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR427DIF
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB096JDM
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) with Cognitive impairment; middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: female

value: adult

value: 90 or above year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS296QVB at ENCODE; https://www.encodeproject.org/ENCBS296QVB/

value: Derived from ENCODE donor ENCDO448YMQ; https://www.encodeproject.org/ENCDO448YMQ/


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB137MPY)

description:
https://www.encodeproject.org/experiments/ENCSR520QDR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on CD4-positive, CD25-positive, alpha-beta regulatory T cell with multiple sclerosis..
experiment encode accession: ENCSR520QDR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR918BGN
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB137MPY

value: primary cell


title: Histone ChIP-seq from middle frontal area 46 (ENCLB344FFN)

description:
https://www.encodeproject.org/experiments/ENCSR585UDE/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (83 years)
experiment encode accession: ENCSR585UDE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR845BPQ
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB344FFN
size range: 200-600

source_name: Homo sapiens female adult (83 years) middle frontal area 46 tissue

value: 83 year

value: ENCBS589LVU at ENCODE; https://www.encodeproject.org/ENCBS589LVU/

value: Derived from ENCODE donor ENCDO448ZXP; https://www.encodeproject.org/ENCDO448ZXP/


title: Control ChIP-seq from middle frontal area 46 (ENCLB734XAI)

description:
https://www.encodeproject.org/experiments/ENCSR534KYQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on middle frontal area 46 tissue male adult (87 years) with Alzheimer's disease, Cognitive impairment
experiment encode accession: ENCSR534KYQ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-06-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB734XAI
size range: 200-600

value: male

value: 87 year

value: ENCBS584OEO at ENCODE; https://www.encodeproject.org/ENCBS584OEO/

value: Derived from ENCODE donor ENCDO776JEI; https://www.encodeproject.org/ENCDO776JEI/


title: TF ChIP-seq from middle frontal area 46 (ENCLB754DNY)

description:
https://www.encodeproject.org/experiments/ENCSR423ZUM/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on dorsolateral prefrontal cortex tissue female adult (90 or above years) originated from dorsolateral prefrontal cortex
experiment encode accession: ENCSR423ZUM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR613JAK
encode release date: 2021-07-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB754DNY
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue with mild cognitive impairment

value: CTCF

value: middle frontal area 46

value: ENCBS345MLG at ENCODE; https://www.encodeproject.org/ENCBS345MLG/

value: Derived from ENCODE donor ENCDO660TGP; https://www.encodeproject.org/ENCDO660TGP/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB142CLY)

description:
https://www.encodeproject.org/experiments/ENCSR585UDE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (83 years)
experiment encode accession: ENCSR585UDE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR845BPQ
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB142CLY
size range: 200-600

value: tissue

value: female

value: adult


title: Histone ChIP-seq from colonic mucosa (ENCLB851IOB)

description:
https://www.encodeproject.org/experiments/ENCSR525HKY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on colonic mucosa tissue female adult (41 years)
experiment encode accession: ENCSR525HKY
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR557RJE
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB851IOB
size range: 200-600

value: colonic mucosa

value: 41 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: DM:no; HTN:no; CAD:no

value: ENCBS312CUX at ENCODE; https://www.encodeproject.org/ENCBS312CUX/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: microRNA-seq from posterior vena cava (ENCLB087SZH)

description:
https://www.encodeproject.org/experiments/ENCSR533CQQ/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation human tissue W71 posterior vena cava microRNA-seq from Mortazavi
experiment encode accession: ENCSR533CQQ
assay title: microRNA-seq
assembly: GRCh38
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB087SZH
size range: <30

source_name: Homo sapiens female adult (47 years) posterior vena cava tissue, preserved by flash-freezing

value: posterior vena cava

value: 47 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: DM:yes; HTN:yes; CAD:no

value: ENCBS741WNS at ENCODE; https://www.encodeproject.org/ENCBS741WNS/

value: Derived from ENCODE donor ENCDO528BHB; https://www.encodeproject.org/ENCDO528BHB/


title: TF ChIP-seq from heart right ventricle (ENCLB624PYB)

description:
https://www.encodeproject.org/experiments/ENCSR585JVS/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF TF ChIP-seq on heart right ventricle tissue male adult (69 years).
experiment encode accession: ENCSR585JVS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR481SJM
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB624PYB
size range: 200-600

source_name: Homo sapiens male adult (69 years) heart right ventricle tissue

value: CTCF

value: heart right ventricle

value: tissue

value: male

value: ischemic (EF 25% LVEDD 5.7; RV mildly dilated, moderate dysfunction)

value: 69 year

value: ENCBS926ALQ at ENCODE; https://www.encodeproject.org/ENCBS926ALQ/

value: Derived from ENCODE donor ENCDO477WED; https://www.encodeproject.org/ENCDO477WED/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB564SVN)

description:
https://www.encodeproject.org/experiments/ENCSR520KVD/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on middle frontal area 46 tissue female adult (90 or above years).
experiment encode accession: ENCSR520KVD
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR874WOQ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB564SVN
size range: 200-600

value: middle frontal area 46

value: female

value: adult

value: 90 or above year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS498VBI at ENCODE; https://www.encodeproject.org/ENCBS498VBI/

value: Derived from ENCODE donor ENCDO250PFZ; https://www.encodeproject.org/ENCDO250PFZ/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB875SHX)

description:
https://www.encodeproject.org/experiments/ENCSR520KVD/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on middle frontal area 46 tissue female adult (90 or above years).
experiment encode accession: ENCSR520KVD
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR874WOQ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB875SHX
size range: 200-600


title: Histone ChIP-seq from heart left ventricle (ENCLB218HUW)

description:
https://www.encodeproject.org/experiments/ENCSR517NSQ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on heart left ventricle tissue male adult (61 years)
experiment encode accession: ENCSR517NSQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR696HNV
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB218HUW
size range: 200-600

source_name: Homo sapiens male adult (61 years) heart left ventricle tissue

value: heart left ventricle

value: 61 year

value: Shin Lin

value: nonischemic (EF 11% LVEDD 7.7; RV severe dilation, severe dysfunction)

value: ENCBS700NCU at ENCODE; https://www.encodeproject.org/ENCBS700NCU/

value: Derived from ENCODE donor ENCDO808ASZ; https://www.encodeproject.org/ENCDO808ASZ/


title: Histone ChIP-seq from colonic mucosa (ENCLB833WPK)

description:
https://www.encodeproject.org/experiments/ENCSR585FIP/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 ChIP-seq on colonic mucosa tissue female adult (41 years)
experiment encode accession: ENCSR585FIP
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR557RJE
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB833WPK
size range: 200-600

value: colonic mucosa

value: tissue

value: 41 year

value: DM:no; HTN:no; CAD:no

value: ENCBS312CUX at ENCODE; https://www.encodeproject.org/ENCBS312CUX/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Histone ChIP-seq from colonic mucosa (ENCLB612EER)

description:
https://www.encodeproject.org/experiments/ENCSR585FIP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on colonic mucosa tissue female adult (41 years)
experiment encode accession: ENCSR585FIP
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR557RJE
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB612EER
size range: 200-600

value: female

value: adult


title: Histone ChIP-seq from pancreas (ENCLB483LBX)

description:
https://www.encodeproject.org/experiments/ENCSR420GIY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on pancreas tissue female child (16 years)
experiment encode accession: ENCSR420GIY
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR067CHO
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB483LBX
size range: 200-600

source_name: Homo sapiens female child (16 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: child

value: 16 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS375CIT at ENCODE; https://www.encodeproject.org/ENCBS375CIT/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: Control ChIP-seq from middle frontal area 46 (ENCLB364LNH)

description:
https://www.encodeproject.org/experiments/ENCSR583BXC/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with mild cognitive impairment.
experiment encode accession: ENCSR583BXC
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB364LNH
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) with mild cognitive impairment; middle frontal area 46 tissue

value: middle frontal area 46

value: 90 or above year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS791EVU at ENCODE; https://www.encodeproject.org/ENCBS791EVU/

value: Derived from ENCODE donor ENCDO471EKG; https://www.encodeproject.org/ENCDO471EKG/


title: Control ChIP-seq from middle frontal area 46 (ENCLB353QJZ)

description:
https://www.encodeproject.org/experiments/ENCSR583BXC/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with mild cognitive impairment.
experiment encode accession: ENCSR583BXC
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB353QJZ
size range: 200-600

value: tissue


title: Histone ChIP-seq from middle frontal area 46 (ENCLB033JDZ)

description:
https://www.encodeproject.org/experiments/ENCSR584RKY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with mild cognitive impairment
experiment encode accession: ENCSR584RKY
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR891ZHA
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB033JDZ
size range: 200-600

value: ENCBS693PDQ at ENCODE; https://www.encodeproject.org/ENCBS693PDQ/

value: Derived from ENCODE donor ENCDO033BMB; https://www.encodeproject.org/ENCDO033BMB/


title: Histone ChIP-seq from heart left ventricle (ENCLB627UIJ)

description:
https://www.encodeproject.org/experiments/ENCSR516LZK/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on heart left ventricle tissue male adult (61 years)
experiment encode accession: ENCSR516LZK
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR696HNV
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB627UIJ
size range: 200-600

value: heart left ventricle

value: male

value: adult

value: 61 year

value: Shin Lin

value: nonischemic (EF 11% LVEDD 7.7; RV severe dilation, severe dysfunction)

value: ENCBS700NCU at ENCODE; https://www.encodeproject.org/ENCBS700NCU/

value: Derived from ENCODE donor ENCDO808ASZ; https://www.encodeproject.org/ENCDO808ASZ/


title: Histone ChIP-seq from heart left ventricle (ENCLB390EJO)

description:
https://www.encodeproject.org/experiments/ENCSR516LZK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on heart left ventricle tissue male adult (61 years)
experiment encode accession: ENCSR516LZK
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR696HNV
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB390EJO
size range: 200-600


title: Histone ChIP-seq from middle frontal area 46 (ENCLB541BEY)

description:
https://www.encodeproject.org/experiments/ENCSR584RKY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with mild cognitive impairment
experiment encode accession: ENCSR584RKY
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR891ZHA
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB541BEY
size range: 200-600

value: middle frontal area 46

value: female


title: Histone ChIP-seq from middle frontal area 46 (ENCLB343POR)

description:
https://www.encodeproject.org/experiments/ENCSR580RIQ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years).
experiment encode accession: ENCSR580RIQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR874WOQ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB343POR
size range: 200-600

value: 90 or above year

value: Bradley Bernstein, Broad

value: ENCBS498VBI at ENCODE; https://www.encodeproject.org/ENCBS498VBI/

value: Derived from ENCODE donor ENCDO250PFZ; https://www.encodeproject.org/ENCDO250PFZ/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB551AGG)

description:
https://www.encodeproject.org/experiments/ENCSR580RIQ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years).
experiment encode accession: ENCSR580RIQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR874WOQ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB551AGG
size range: 200-600

value: tissue

value: Rush University


title: TF ChIP-seq from HepG2 (ENCLB004AFV)

description:
https://www.encodeproject.org/experiments/ENCSR513YMV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR513YMV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2021-08-13
lab: Richard Myers, HAIB
library encode accession: ENCLB004AFV
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ELK4

tag: line

value: cell line

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS771BUE at ENCODE; https://www.encodeproject.org/ENCBS771BUE/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: Histone ChIP-seq from heart right ventricle (ENCLB669YTG)

description:
https://www.encodeproject.org/experiments/ENCSR670UJZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on heart right ventricle tissue male adult (43 years).
experiment encode accession: ENCSR670UJZ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR481QDJ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB669YTG
size range: 200-600

source_name: Homo sapiens male adult (43 years) heart right ventricle tissue

value: heart right ventricle

value: male

value: adult

value: 43 year

value: Shin Lin

value: nonischemic (EF 23%, LVEDD 6.1; RV moderate dilation, normal function)

value: ENCBS096INK at ENCODE; https://www.encodeproject.org/ENCBS096INK/

value: Derived from ENCODE donor ENCDO967KID; https://www.encodeproject.org/ENCDO967KID/


title: Histone ChIP-seq from heart right ventricle (ENCLB310GOR)

description:
https://www.encodeproject.org/experiments/ENCSR670UJZ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on heart right ventricle tissue male adult (43 years).
experiment encode accession: ENCSR670UJZ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR481QDJ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB310GOR
size range: 200-600

value: tissue

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB519SXQ)

description:
https://www.encodeproject.org/experiments/ENCSR579NKR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell..
experiment encode accession: ENCSR579NKR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR299YBY
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB519SXQ

source_name: Homo sapiens activated CD8-positive, naive alpha-beta T primary cell

value: primary cell

value: not collected

value: unknown

value: John Stamatoyannopoulos

value: ENCBS521XUI at ENCODE; https://www.encodeproject.org/ENCBS521XUI/

value: Derived from ENCODE donor ENCDO930DIF; https://www.encodeproject.org/ENCDO930DIF/


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB339HLD)

description:
https://www.encodeproject.org/experiments/ENCSR579NKR/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell..
experiment encode accession: ENCSR579NKR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR299YBY
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB339HLD


title: TF ChIP-seq from HepG2 (ENCLB568PKE)

description:
https://www.encodeproject.org/experiments/ENCSR513YMV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR513YMV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR020QUJ
encode release date: 2021-08-13
lab: Richard Myers, HAIB
library encode accession: ENCLB568PKE
fragmentation methods: sonication (generic)

value: cell line

value: child

value: 15 year

value: Richard Myers, HAIB

value: Richard Myers

value: hepatocellular carcinoma

value: ENCBS597YJH at ENCODE; https://www.encodeproject.org/ENCBS597YJH/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from heart right ventricle (ENCLB548SAC)

description:
https://www.encodeproject.org/experiments/ENCSR585JVS/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF TF ChIP-seq on heart right ventricle tissue male adult (69 years).
experiment encode accession: ENCSR585JVS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR481SJM
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB548SAC
size range: 200-600

value: CTCF

value: heart right ventricle

value: male

value: ischemic (EF 25% LVEDD 5.7; RV mildly dilated, moderate dysfunction)

value: adult

value: 69 year

value: Shin Lin

value: ENCBS926ALQ at ENCODE; https://www.encodeproject.org/ENCBS926ALQ/

value: Derived from ENCODE donor ENCDO477WED; https://www.encodeproject.org/ENCDO477WED/


title: Histone ChIP-seq from pancreas (ENCLB773NEN)

description:
https://www.encodeproject.org/experiments/ENCSR511LIV/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on pancreas tissue female adult (61 years)
experiment encode accession: ENCSR511LIV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR130HAG
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB773NEN
size range: 200-600

source_name: Homo sapiens female adult (61 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: tissue

value: female

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: 61 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS297KRV at ENCODE; https://www.encodeproject.org/ENCBS297KRV/

value: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/


title: Histone ChIP-seq from pancreas (ENCLB191XWM)

description:
https://www.encodeproject.org/experiments/ENCSR420GIY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 ChIP-seq on pancreas tissue female child (16 years)
experiment encode accession: ENCSR420GIY
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR067CHO
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB191XWM
size range: 200-600

value: DM:no; HTN:no; CAD:no

value: child

value: 16 year

value: ENCBS375CIT at ENCODE; https://www.encodeproject.org/ENCBS375CIT/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: Control ChIP-seq from middle frontal area 46 (ENCLB085YEU)

description:
https://www.encodeproject.org/experiments/ENCSR417AQU/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with mild cognitive impairment.
experiment encode accession: ENCSR417AQU
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB085YEU
size range: 200-600

value: middle frontal area 46

value: adult

value: 90 or above year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS173HMY at ENCODE; https://www.encodeproject.org/ENCBS173HMY/

value: Derived from ENCODE donor ENCDO739EFE; https://www.encodeproject.org/ENCDO739EFE/


title: Histone ChIP-seq from pancreas (ENCLB821GTQ)

description:
https://www.encodeproject.org/experiments/ENCSR511LIV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on pancreas tissue female adult (61 years)
experiment encode accession: ENCSR511LIV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR130HAG
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB821GTQ
size range: 200-600

value: pancreas

value: tissue

value: female

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: 61 year


title: Histone ChIP-seq from heart left ventricle (ENCLB238HUS)

description:
https://www.encodeproject.org/experiments/ENCSR517NSQ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on heart left ventricle tissue male adult (61 years)
experiment encode accession: ENCSR517NSQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR696HNV
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB238HUS
size range: 200-600

value: heart left ventricle

value: male

value: Shin Lin

value: nonischemic (EF 11% LVEDD 7.7; RV severe dilation, severe dysfunction)

value: ENCBS700NCU at ENCODE; https://www.encodeproject.org/ENCBS700NCU/

value: Derived from ENCODE donor ENCDO808ASZ; https://www.encodeproject.org/ENCDO808ASZ/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB207ONV)

description:
https://www.encodeproject.org/experiments/ENCSR498NGT/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on middle frontal area 46 tissue female adult (85 years) with Alzheimer's disease.
experiment encode accession: ENCSR498NGT
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR629GZZ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB207ONV
size range: 200-600

source_name: Homo sapiens female adult (85 years) with Alzheimer's disease; middle frontal area 46 tissue

value: middle frontal area 46

value: adult

value: 85 year

value: ENCBS368SHA at ENCODE; https://www.encodeproject.org/ENCBS368SHA/

value: Derived from ENCODE donor ENCDO080EZF; https://www.encodeproject.org/ENCDO080EZF/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB068BLP)

description:
https://www.encodeproject.org/experiments/ENCSR498NGT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on middle frontal area 46 tissue female adult (85 years) with Alzheimer's disease.
experiment encode accession: ENCSR498NGT
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR629GZZ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB068BLP
size range: 200-600

value: Bradley Bernstein, Broad

value: Rush University


title: Control ChIP-seq from middle frontal area 46 (ENCLB234FMG)

description:
https://www.encodeproject.org/experiments/ENCSR417AQU/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with mild cognitive impairment.
experiment encode accession: ENCSR417AQU
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB234FMG
size range: 200-600

value: tissue

value: 90 or above year

value: ENCBS173HMY at ENCODE; https://www.encodeproject.org/ENCBS173HMY/

value: Derived from ENCODE donor ENCDO739EFE; https://www.encodeproject.org/ENCDO739EFE/


title: microRNA-seq from heart right ventricle (ENCLB126CJY)

description:
https://www.encodeproject.org/experiments/ENCSR582UOM/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation human tissue W72 heart right ventricle microRNA-seq from Mortazavi
experiment encode accession: ENCSR582UOM
assay title: microRNA-seq
assembly: GRCh38
encode release date: 2021-08-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB126CJY
size range: <30

source_name: Homo sapiens female adult (46 years) heart right ventricle tissue, preserved by flash-freezing

value: heart right ventricle

value: female

value: 46 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: DM:no; HTN:no; CAD:no

value: ENCBS238NAR at ENCODE; https://www.encodeproject.org/ENCBS238NAR/

value: Derived from ENCODE donor ENCDO411EVD; https://www.encodeproject.org/ENCDO411EVD/


title: Mint-ChIP-seq from type B pancreatic cell (ENCLB447OMA)

description:
https://www.encodeproject.org/experiments/ENCSR315DOY/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on type B pancreatic cell
experiment encode accession: ENCSR315DOY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR380ZKL
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB447OMA

source_name: Homo sapiens female embryo (5 days) type B pancreatic in vitro differentiated cells originated from type B pancreatic cell

value: type B pancreatic cell

value: in vitro differentiated cells

value: WA09 derived insulin producing beta-like cells

value: healthy

value: embryonic

value: 5 day

value: SESCC

value: ENCBS251SEQ at ENCODE; https://www.encodeproject.org/ENCBS251SEQ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Histone ChIP-seq from mucosa of descending colon (ENCLB467TGZ)

description:
https://www.encodeproject.org/experiments/ENCSR498LHL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on mucosa of descending colon tissue male adult (40 years)
experiment encode accession: ENCSR498LHL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR856YCA
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB467TGZ
size range: 200-600

source_name: Homo sapiens male adult (40 years) mucosa of descending colon tissue

value: mucosa of descending colon

value: tissue

value: male

value: adult

value: 40 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: DM:no; HTN:yes; CAD:no

value: ENCBS724VYT at ENCODE; https://www.encodeproject.org/ENCBS724VYT/

value: Derived from ENCODE donor ENCDO392CRK; https://www.encodeproject.org/ENCDO392CRK/


title: Histone ChIP-seq from mucosa of descending colon (ENCLB153ZLY)

description:
https://www.encodeproject.org/experiments/ENCSR498LHL/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on mucosa of descending colon tissue male adult (40 years)
experiment encode accession: ENCSR498LHL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR856YCA
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB153ZLY
size range: 200-600


title: Mint-ChIP-seq from type B pancreatic cell (ENCLB096CRX)

description:
https://www.encodeproject.org/experiments/ENCSR315DOY/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on type B pancreatic cell
experiment encode accession: ENCSR315DOY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR380ZKL
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB096CRX
fragmentation methods: none

value: type B pancreatic cell

value: in vitro differentiated cells

value: WA09 derived insulin producing beta-like cells

value: female

value: ENCBS779FCS at ENCODE; https://www.encodeproject.org/ENCBS779FCS/


title: Histone ChIP-seq from heart right ventricle (ENCLB712IHF)

description:
https://www.encodeproject.org/experiments/ENCSR494QLL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on heart right ventricle tissue female adult (56 years).
experiment encode accession: ENCSR494QLL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR278ACD
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB712IHF
size range: 200-600

source_name: Homo sapiens female adult (56 years) heart right ventricle tissue

value: heart right ventricle

value: 56 year

value: PGD

value: ENCBS664CKV at ENCODE; https://www.encodeproject.org/ENCBS664CKV/

value: Derived from ENCODE donor ENCDO907YUG; https://www.encodeproject.org/ENCDO907YUG/


title: Histone ChIP-seq from heart right ventricle (ENCLB508ONI)

description:
https://www.encodeproject.org/experiments/ENCSR494QLL/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on heart right ventricle tissue female adult (56 years).
experiment encode accession: ENCSR494QLL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR278ACD
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB508ONI
size range: 200-600

value: tissue

value: adult


title: Histone ChIP-seq from heart left ventricle (ENCLB099QBZ)

description:
https://www.encodeproject.org/experiments/ENCSR412THE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on heart left ventricle tissue male adult (54 years).
experiment encode accession: ENCSR412THE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR040TRJ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB099QBZ
size range: 200-600

source_name: Homo sapiens male adult (54 years) heart left ventricle tissue

value: heart left ventricle

value: male

value: 54 year

value: Bradley Bernstein, Broad

value: ischemic (EF 13 %, LVEDD 7.1; RV severe dilation, severe dysfunction)

value: ENCBS115UFJ at ENCODE; https://www.encodeproject.org/ENCBS115UFJ/

value: Derived from ENCODE donor ENCDO039RUH; https://www.encodeproject.org/ENCDO039RUH/


title: Histone ChIP-seq from heart left ventricle (ENCLB943THF)

description:
https://www.encodeproject.org/experiments/ENCSR412THE/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on heart left ventricle tissue male adult (54 years).
experiment encode accession: ENCSR412THE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR040TRJ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB943THF
size range: 200-600

value: Shin Lin


title: Histone ChIP-seq from middle frontal area 46 (ENCLB120BZC)

description:
https://www.encodeproject.org/experiments/ENCSR313IJX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (88 years) with mild cognitive impairment
experiment encode accession: ENCSR313IJX
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR708TMV
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB120BZC
size range: 200-600

source_name: Homo sapiens female adult (88 years) with mild cognitive impairment; middle frontal area 46 tissue

value: middle frontal area 46

value: female

value: 88 year

value: Rush University

value: ENCBS682YFH at ENCODE; https://www.encodeproject.org/ENCBS682YFH/

value: Derived from ENCODE donor ENCDO151OJB; https://www.encodeproject.org/ENCDO151OJB/


title: Histone ChIP-seq from colonic mucosa (ENCLB697QBQ)

description:
https://www.encodeproject.org/experiments/ENCSR313DUH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on colonic mucosa tissue female adult (41 years)
experiment encode accession: ENCSR313DUH
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR557RJE
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB697QBQ
size range: 200-600

source_name: Homo sapiens female adult (41 years) colonic mucosa tissue

value: colonic mucosa

value: 41 year

value: DM:no; HTN:no; CAD:no

value: ENCBS312CUX at ENCODE; https://www.encodeproject.org/ENCBS312CUX/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Histone ChIP-seq from colonic mucosa (ENCLB649IOV)

description:
https://www.encodeproject.org/experiments/ENCSR313DUH/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on colonic mucosa tissue female adult (41 years)
experiment encode accession: ENCSR313DUH
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR557RJE
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB649IOV
size range: 200-600

value: tissue

value: adult


title: Histone ChIP-seq from middle frontal area 46 (ENCLB953ZEH)

description:
https://www.encodeproject.org/experiments/ENCSR313IJX/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (88 years) with mild cognitive impairment
experiment encode accession: ENCSR313IJX
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR708TMV
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB953ZEH
size range: 200-600

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from chondrocyte (ENCLB509RVG)

description:
https://www.encodeproject.org/experiments/ENCSR494CRX/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on chondrocyte.
experiment encode accession: ENCSR494CRX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR466ZEA
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB509RVG

source_name: Homo sapiens female embryo (5 days) chondrocyte in vitro differentiated cells originated from chondrocyte

value: chondrocyte

value: in vitro differentiated cells

value: WA09 derived chondrocytes

value: healthy

value: embryonic

value: 5 day

value: SESCC

value: ENCBS497BNU at ENCODE; https://www.encodeproject.org/ENCBS497BNU/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from chondrocyte (ENCLB638ILK)

description:
https://www.encodeproject.org/experiments/ENCSR494CRX/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on chondrocyte.
experiment encode accession: ENCSR494CRX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR466ZEA
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB638ILK

value: female

value: ENCBS434TAN at ENCODE; https://www.encodeproject.org/ENCBS434TAN/


title: Mint-ChIP-seq from chondrocyte (ENCLB366FXG)

description:
https://www.encodeproject.org/experiments/ENCSR494CRX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on chondrocyte.
experiment encode accession: ENCSR494CRX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR466ZEA
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB366FXG


title: Histone ChIP-seq from middle frontal area 46 (ENCLB764CYO)

description:
https://www.encodeproject.org/experiments/ENCSR314KSZ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years).
experiment encode accession: ENCSR314KSZ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR634QZP
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB764CYO
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue

value: middle frontal area 46

value: 90 or above year

value: Rush University

value: ENCBS868XXM at ENCODE; https://www.encodeproject.org/ENCBS868XXM/

value: Derived from ENCODE donor ENCDO101GPB; https://www.encodeproject.org/ENCDO101GPB/


title: Mint-ChIP-seq from T-helper 2 cell (ENCLB625HGY)

description:
https://www.encodeproject.org/experiments/ENCSR414QLH/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac Mint-ChIP-seq on T-helper 2 cell male adult (35 years) treated with 5 ?g/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4
experiment encode accession: ENCSR414QLH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR635PGB
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB625HGY

source_name: Homo sapiens male adult (35 years) T-helper 2 primary cell treated with 5 ug/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4

value: T-helper 2 cell

value: primary cell

value: male

value: adult

value: 35 year

value: Yijun Ruan, JAX

value: AllCells

tag: treatments

value: treatment_term_name:Interferon-gamma antibody; treatment_type:antibody; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein;

value: ENCBS965HLC at ENCODE; https://www.encodeproject.org/ENCBS965HLC/

value: Derived from ENCODE donor ENCDO374BBL; https://www.encodeproject.org/ENCDO374BBL/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB350XKE)

description:
https://www.encodeproject.org/experiments/ENCSR314KSZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years).
experiment encode accession: ENCSR314KSZ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR634QZP
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB350XKE
size range: 200-600

value: tissue

value: female

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB782EWU)

description:
https://www.encodeproject.org/experiments/ENCSR411NTJ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR411NTJ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR248FZA
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB782EWU

source_name: Homo sapiens male adult (42 years) activated CD8-positive, naive alpha-beta T primary cell

value: 42 year

value: John Stamatoyannopoulos

value: ENCBS819MUY at ENCODE; https://www.encodeproject.org/ENCBS819MUY/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: Mint-ChIP-seq from type B pancreatic cell (ENCLB851YQV)

description:
https://www.encodeproject.org/experiments/ENCSR315DOY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on type B pancreatic cell
experiment encode accession: ENCSR315DOY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR380ZKL
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB851YQV
fragmentation methods: none

value: type B pancreatic cell

value: in vitro differentiated cells

value: WA09 derived insulin producing beta-like cells

value: healthy

value: embryonic

value: 5 day

value: SESCC

value: ENCBS779FCS at ENCODE; https://www.encodeproject.org/ENCBS779FCS/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from chondrocyte (ENCLB056WRM)

description:
https://www.encodeproject.org/experiments/ENCSR494CRX/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on chondrocyte.
experiment encode accession: ENCSR494CRX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR466ZEA
encode release date: 2021-09-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB056WRM

value: chondrocyte

value: WA09 derived chondrocytes

value: ENCBS434TAN at ENCODE; https://www.encodeproject.org/ENCBS434TAN/


title: Mint-ChIP-seq from T-helper 2 cell (ENCLB095ALZ)

description:
https://www.encodeproject.org/experiments/ENCSR414QLH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac Mint-ChIP-seq on T-helper 2 cell male adult (35 years) treated with 5 ?g/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4
experiment encode accession: ENCSR414QLH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR635PGB
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB095ALZ

value: T-helper 2 cell

value: primary cell

value: male

value: adult

value: 35 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_name:Interferon-gamma antibody; treatment_type:antibody; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein;

value: ENCBS965HLC at ENCODE; https://www.encodeproject.org/ENCBS965HLC/

value: Derived from ENCODE donor ENCDO374BBL; https://www.encodeproject.org/ENCDO374BBL/


title: Control Mint-ChIP-seq from CD4-positive naive resting alpha-beta T cell (ENCLB630IYP)

description:
https://www.encodeproject.org/experiments/ENCSR490HRA/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on CD4-positive naive resting alpha-beta T cell male adult (35 years) treated with anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR490HRA
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB630IYP

source_name: Homo sapiens male adult (35 years) CD4-positive naive resting alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS266XPE at ENCODE; https://www.encodeproject.org/ENCBS266XPE/


title: Mint-ChIP-seq from type B pancreatic cell (ENCLB910CZA)

description:
https://www.encodeproject.org/experiments/ENCSR315DOY/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on type B pancreatic cell
experiment encode accession: ENCSR315DOY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR380ZKL
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB910CZA

value: type B pancreatic cell

value: in vitro differentiated cells

value: WA09 derived insulin producing beta-like cells

value: female

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein, Broad

value: SESCC

value: ENCBS251SEQ at ENCODE; https://www.encodeproject.org/ENCBS251SEQ/


title: Control Mint-ChIP-seq from CD4-positive naive resting alpha-beta T cell (ENCLB446ROZ)

description:
https://www.encodeproject.org/experiments/ENCSR490HRA/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on CD4-positive naive resting alpha-beta T cell male adult (35 years) treated with anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR490HRA
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB446ROZ

value: primary cell

value: male

value: adult

value: 35 year

value: Yijun Ruan, JAX


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB242HVE)

description:
https://www.encodeproject.org/experiments/ENCSR411NTJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR411NTJ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR248FZA
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB242HVE

value: 42 year

value: John Stamatoyannopoulos

value: ENCBS819MUY at ENCODE; https://www.encodeproject.org/ENCBS819MUY/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: Histone ChIP-seq from heart right ventricle (ENCLB545NRL)

description:
https://www.encodeproject.org/experiments/ENCSR409QXS/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on heart right ventricle tissue male adult (73 years).
experiment encode accession: ENCSR409QXS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR145RXI
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB545NRL
size range: 200-600

source_name: Homo sapiens male adult (73 years) heart right ventricle tissue

value: heart right ventricle

value: tissue

value: 73 year

value: Shin Lin

value: ischemic (EF 35%, LVEDD 5.7; RV mildly dilated, moderate dysfunction)

value: ENCBS237SHK at ENCODE; https://www.encodeproject.org/ENCBS237SHK/

value: Derived from ENCODE donor ENCDO804CLC; https://www.encodeproject.org/ENCDO804CLC/


title: Histone ChIP-seq from heart right ventricle (ENCLB470PQB)

description:
https://www.encodeproject.org/experiments/ENCSR409QXS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on heart right ventricle tissue male adult (73 years).
experiment encode accession: ENCSR409QXS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR145RXI
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB470PQB
size range: 200-600

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from CD4-positive naive resting alpha-beta T cell (ENCLB857UAI)

description:
https://www.encodeproject.org/experiments/ENCSR311RHN/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on CD4-positive naive resting alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR311RHN
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR398KXE
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB857UAI

source_name: Homo sapiens male adult (42 years) CD4-positive naive resting alpha-beta T primary cell

value: primary cell

value: ENCBS706CSJ at ENCODE; https://www.encodeproject.org/ENCBS706CSJ/


title: Mint-ChIP-seq from CD4-positive naive resting alpha-beta T cell (ENCLB638UJY)

description:
https://www.encodeproject.org/experiments/ENCSR311RHN/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on CD4-positive naive resting alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR311RHN
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR398KXE
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB638UJY

value: male

value: adult


title: Histone ChIP-seq from heart left ventricle (ENCLB668BNI)

description:
https://www.encodeproject.org/experiments/ENCSR309GDX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on heart left ventricle tissue male adult (61 years).
experiment encode accession: ENCSR309GDX
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR696HNV
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB668BNI
size range: 200-600

source_name: Homo sapiens male adult (61 years) heart left ventricle tissue

value: heart left ventricle

value: 61 year

value: nonischemic (EF 11% LVEDD 7.7; RV severe dilation, severe dysfunction)

value: ENCBS700NCU at ENCODE; https://www.encodeproject.org/ENCBS700NCU/

value: Derived from ENCODE donor ENCDO808ASZ; https://www.encodeproject.org/ENCDO808ASZ/


title: Histone ChIP-seq from heart left ventricle (ENCLB976AYL)

description:
https://www.encodeproject.org/experiments/ENCSR309GDX/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 ChIP-seq on heart left ventricle tissue male adult (61 years).
experiment encode accession: ENCSR309GDX
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR696HNV
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB976AYL
size range: 200-600


title: Histone ChIP-seq from heart right ventricle (ENCLB412MRA)

description:
https://www.encodeproject.org/experiments/ENCSR306WSW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on heart right ventricle tissue male adult (61 years).
experiment encode accession: ENCSR306WSW
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR891YGO
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB412MRA
size range: 200-600

source_name: Homo sapiens male adult (61 years) heart right ventricle tissue

value: heart right ventricle

value: ENCBS175LFH at ENCODE; https://www.encodeproject.org/ENCBS175LFH/


title: Mint-ChIP-seq from activated T-helper 2 cell (ENCLB589NBN)

description:
https://www.encodeproject.org/experiments/ENCSR408XYA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on activated T-helper 2 cell male adult (35 years) treated with 5 ?g/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 , anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR408XYA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR193QAG
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB589NBN

source_name: Homo sapiens male adult (35 years) activated T-helper 2 primary cell treated with 5 μg/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 , anti-CD3 and anti-CD28 coated beads

value: activated T-helper 2 cell

value: 35 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_name:Interferon-gamma antibody; treatment_type:antibody; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS271FSH at ENCODE; https://www.encodeproject.org/ENCBS271FSH/

value: Derived from ENCODE donor ENCDO374BBL; https://www.encodeproject.org/ENCDO374BBL/


title: Histone ChIP-seq from heart right ventricle (ENCLB822TXT)

description:
https://www.encodeproject.org/experiments/ENCSR306WSW/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 ChIP-seq on heart right ventricle tissue male adult (61 years).
experiment encode accession: ENCSR306WSW
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR891YGO
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB822TXT
size range: 200-600

value: tissue

value: Bradley Bernstein, Broad

value: Shin Lin


title: Control Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB662PLP)

description:
https://www.encodeproject.org/experiments/ENCSR404BIJ/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR404BIJ
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB662PLP

value: primary cell

value: male

value: adult

value: 42 year

value: John Stamatoyannopoulos

value: ENCBS591TQB at ENCODE; https://www.encodeproject.org/ENCBS591TQB/

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: Control Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB866DHX)

description:
https://www.encodeproject.org/experiments/ENCSR404BIJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR404BIJ
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB866DHX


title: Mint-ChIP-seq from activated T-helper 2 cell (ENCLB538ULH)

description:
https://www.encodeproject.org/experiments/ENCSR408XYA/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on activated T-helper 2 cell male adult (35 years) treated with 5 ?g/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 , anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR408XYA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR193QAG
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB538ULH

value: activated T-helper 2 cell


title: Histone ChIP-seq from heart right ventricle (ENCLB757ZKT)

description:
https://www.encodeproject.org/experiments/ENCSR306UIK/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 ChIP-seq on heart right ventricle tissue female adult (56 years).
experiment encode accession: ENCSR306UIK
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR278ACD
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB757ZKT
size range: 200-600

value: heart right ventricle

value: female

value: 56 year

value: PGD

value: ENCBS664CKV at ENCODE; https://www.encodeproject.org/ENCBS664CKV/

value: Derived from ENCODE donor ENCDO907YUG; https://www.encodeproject.org/ENCDO907YUG/


title: Histone ChIP-seq from heart right ventricle (ENCLB931RMY)

description:
https://www.encodeproject.org/experiments/ENCSR306UIK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on heart right ventricle tissue female adult (56 years).
experiment encode accession: ENCSR306UIK
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR278ACD
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB931RMY
size range: 200-600

value: tissue


title: Histone ChIP-seq from heart left ventricle (ENCLB772ORD)

description:
https://www.encodeproject.org/experiments/ENCSR402JWL/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on heart left ventricle tissue male adult (73 years).
experiment encode accession: ENCSR402JWL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR170MJE
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB772ORD
size range: 200-600

source_name: Homo sapiens male adult (73 years) heart left ventricle tissue

value: heart left ventricle

value: ischemic (EF 35%, LVEDD 5.7; RV mildly dilated, moderate dysfunction)

value: 73 year

value: Bradley Bernstein, Broad

value: ENCBS919GVI at ENCODE; https://www.encodeproject.org/ENCBS919GVI/

value: Derived from ENCODE donor ENCDO804CLC; https://www.encodeproject.org/ENCDO804CLC/


title: Control Mint-ChIP-seq from CD4-positive naive resting alpha-beta T cell (ENCLB527JOB)

description:
https://www.encodeproject.org/experiments/ENCSR398KXE/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on CD4-positive naive resting alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR398KXE
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB527JOB

value: primary cell

value: male

value: adult

value: 42 year

value: John Stamatoyannopoulos

value: ENCBS706CSJ at ENCODE; https://www.encodeproject.org/ENCBS706CSJ/


title: Control Mint-ChIP-seq from CD4-positive naive resting alpha-beta T cell (ENCLB729MEU)

description:
https://www.encodeproject.org/experiments/ENCSR398KXE/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on CD4-positive naive resting alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR398KXE
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB729MEU

value: Derived from ENCODE donor ENCDO833KUM; https://www.encodeproject.org/ENCDO833KUM/


title: Sample 50 DNB

city: Eastbourne

first: Guan

last: Wang

address: 30 Carlisle Rd

department: School of Sport and Health Sciences

country: United Kingdom

institute: University of Brighton

data_processing:
Base call files were generated by base-calling software implemented on the RNA-seq instruments, generating raw sequences for subsequent analysis.
Raw sequences were examined by FastQC for basic quality checks (e.g. per base sequence quality, adaptor content, and per base N content), FastQ Screen for detecting sample swaps or sample contamination, HISAT2 for alignment to the reference genomeassembly (GRCh38.p12) using the Ensembl 94 annotation prior to RseQC for read distribution analysis.
Salmon selective alignment was performed for transcriptome mapping, over a k-mer length of 31, along with --SeqBias and --gcBias flags switched on. The bioconductor package “tximport” was used to summarise transcript-level estimates to genes. DESeq2 was used for paired sample DGE analysis.
Genome_build: GRCh38
Supplementary_files_format_and_content: Raw counts matrix for all samples

source_name: Whole blood

extract_protocol:
Three milliliters of whole blood was collected from an antecubital vein using the Tempus Blood RNA tubes (Thermo Fisher Scientific, Waltham, MA, USA). Total RNA was isolated from the whole blood according to the manufacturer’s instructions (Tempus Spin RNA Isolation Kit, Thermo Fisher Scientific, Waltham, MA, USA). The purified total RNA was eluted in 90 μL elution buffer and stored in three aliquots at −80°C until further analysis.
Five hundred nanograms of total RNA was used for sequencing according to the Illumina TruSeq Stranded mRNA sample prep guide - high sample protocol (Illumina, San Diego, CA, USA). Briefly, mRNA molecules were purified using the poly-T oligo attached magnetic beads following which the mRNA was fragmented and primed for cDNA synthesis. A single “A” base was subsequently added to the 3-prime end of the synthesised blunt-ended cDNA and ligated with index adapters for hybridisation onto a flow cell. The DNA fragments with adapters on both ends were amplified via polymerase chain reaction to generate the final double-stranded cDNA (ds-cDNA) library followed by library validation and normalisation and pooling of the samples. Samples were sequenced at 2x75 bp read length to a depth aimed at approximately 64 M reads per sample on the Illumina NextSeq 500 (Illumina, San Diego, CA, USA). Four hundred nanograms of total RNA was used for sequencing on the MGI DNBSEQ-G400RS instrument (MGI, Shenzhen, China). Total RNA was first treated with Globin-Zero Gold Kit (Illumina, San Diego, CA, USA) for rRNA depletion and globin mRNA reduction. The ds-cDNA library preparation is in line with the Illumina RNA-seq protocol described above. The ds-cDNAs were then heat denatured and circularised by the splint oligo sequence to generate the single strand circle DNA followed by rolling circle replication to create DNA nanoballs (DNB) for processing on the MGI DNBSEQ-G400RS.

tag: age (year)

value: Male

tag: disease state

value: Healthy

tag: time (day)


title: Sample 49 DNB


title: Mint-ChIP-seq from CD4-positive naive resting alpha-beta T cell (ENCLB443OOS)

description:
https://www.encodeproject.org/experiments/ENCSR395IUF/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 Mint-ChIP-seq on CD4-positive naive resting alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR395IUF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR398KXE
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB443OOS


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB162RKJ)

description:
https://www.encodeproject.org/experiments/ENCSR392MYU/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads , 10 ng/mL Interleukin-2
experiment encode accession: ENCSR392MYU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR897UBR
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB162RKJ

source_name: Homo sapiens male adult (30 years) activated CD8-positive, naive alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads , 10 ng/mL Interleukin-2

value: 30 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein;

value: ENCBS715FVA at ENCODE; https://www.encodeproject.org/ENCBS715FVA/

value: Derived from ENCODE donor ENCDO166AGR; https://www.encodeproject.org/ENCDO166AGR/


title: Mint-ChIP-seq from CD4-positive naive resting alpha-beta T cell (ENCLB146OXP)

description:
https://www.encodeproject.org/experiments/ENCSR395IUF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 Mint-ChIP-seq on CD4-positive naive resting alpha-beta T cell male adult (42 years)
experiment encode accession: ENCSR395IUF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR398KXE
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB146OXP

value: Bradley Bernstein, Broad


title: Sample 47 DNB


title: Mint-ChIP-seq from activated T-helper 2 cell (ENCLB514WSG)

description:
https://www.encodeproject.org/experiments/ENCSR301UDE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on activated T-helper 2 cell male adult (35 years) treated with 5 ?g/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 , anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR301UDE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR193QAG
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB514WSG

value: activated T-helper 2 cell

value: 35 year

value: treatment_term_name:Interferon-gamma antibody; treatment_type:antibody; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS271FSH at ENCODE; https://www.encodeproject.org/ENCBS271FSH/

value: Derived from ENCODE donor ENCDO374BBL; https://www.encodeproject.org/ENCDO374BBL/


title: Sample 46 DNB


title: Sample 45 DNB


title: Mint-ChIP-seq from activated T-helper 2 cell (ENCLB843WKB)

description:
https://www.encodeproject.org/experiments/ENCSR301UDE/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on activated T-helper 2 cell male adult (35 years) treated with 5 ?g/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 , anti-CD3 and anti-CD28 coated beads
experiment encode accession: ENCSR301UDE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR193QAG
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB843WKB

value: primary cell

value: male

value: adult


title: Control ChIP-seq from middle frontal area 46 (ENCLB718COY)

description:
https://www.encodeproject.org/experiments/ENCSR386UHY/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with Alzheimer's disease.
experiment encode accession: ENCSR386UHY
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB718COY
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) with Alzheimer's disease; middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: female

value: 90 or above year

value: Rush University

value: ENCBS145CCA at ENCODE; https://www.encodeproject.org/ENCBS145CCA/

value: Derived from ENCODE donor ENCDO847KYQ; https://www.encodeproject.org/ENCDO847KYQ/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB825PYM)

description:
https://www.encodeproject.org/experiments/ENCSR386KFO/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (89 years) with Alzheimer's disease
experiment encode accession: ENCSR386KFO
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR869KBA
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB825PYM
size range: 200-600

source_name: Homo sapiens female adult (89 years) with Alzheimer's disease; middle frontal area 46 tissue

value: 89 year

value: ENCBS967JLM at ENCODE; https://www.encodeproject.org/ENCBS967JLM/

value: Derived from ENCODE donor ENCDO830KFO; https://www.encodeproject.org/ENCDO830KFO/


title: Control ChIP-seq from middle frontal area 46 (ENCLB989FEM)

description:
https://www.encodeproject.org/experiments/ENCSR386UHY/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with Alzheimer's disease.
experiment encode accession: ENCSR386UHY
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB989FEM
size range: 200-600

value: Bradley Bernstein, Broad


title: Sample 44 DNB

value: Male

value: Healthy


title: TF ChIP-seq from middle frontal area 46 (ENCLB736GAY)

description:
https://www.encodeproject.org/experiments/ENCSR300WOR/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF TF ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with Alzheimer's disease, Cognitive impairment.
experiment encode accession: ENCSR300WOR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR732BRB
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB736GAY
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) with Alzheimer's disease, Cognitive impairment; middle frontal area 46 tissue

value: CTCF

value: ENCBS587MGS at ENCODE; https://www.encodeproject.org/ENCBS587MGS/

value: Derived from ENCODE donor ENCDO754RFQ; https://www.encodeproject.org/ENCDO754RFQ/


title: Sample 43 DNB


title: Histone ChIP-seq from middle frontal area 46 (ENCLB393VCI)

description:
https://www.encodeproject.org/experiments/ENCSR386KFO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (89 years) with Alzheimer's disease
experiment encode accession: ENCSR386KFO
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR869KBA
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB393VCI
size range: 200-600

value: adult


title: Sample 42 DNB

value: Base2 (0)


title: TF ChIP-seq from middle frontal area 46 (ENCLB137HYM)

description:
https://www.encodeproject.org/experiments/ENCSR300WOR/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF TF ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with Alzheimer's disease, Cognitive impairment.
experiment encode accession: ENCSR300WOR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR732BRB
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB137HYM
size range: 200-600

value: middle frontal area 46

value: tissue


title: Sample 41 DNB


title: Sample 48 DNB


title: Control Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB803AHU)

description:
https://www.encodeproject.org/experiments/ENCSR299YBY/
***************
biological replicate number: 1
technical replicate number: 1
description: Control Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell.
experiment encode accession: ENCSR299YBY
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB803AHU

source_name: Homo sapiens activated CD8-positive, naive alpha-beta T primary cell

value: primary cell

value: not collected

value: unknown

value: John Stamatoyannopoulos

value: ENCBS521XUI at ENCODE; https://www.encodeproject.org/ENCBS521XUI/

value: Derived from ENCODE donor ENCDO930DIF; https://www.encodeproject.org/ENCDO930DIF/


title: Histone ChIP-seq from heart left ventricle (ENCLB061BLJ)

description:
https://www.encodeproject.org/experiments/ENCSR299NYB/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on heart left ventricle tissue female adult (56 years).
experiment encode accession: ENCSR299NYB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR261PLD
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB061BLJ
size range: 200-600

source_name: Homo sapiens female adult (56 years) heart left ventricle tissue

value: heart left ventricle

value: female

value: PGD

value: 56 year

value: Shin Lin

value: ENCBS906ICM at ENCODE; https://www.encodeproject.org/ENCBS906ICM/

value: Derived from ENCODE donor ENCDO907YUG; https://www.encodeproject.org/ENCDO907YUG/


title: Control Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB795CSS)

description:
https://www.encodeproject.org/experiments/ENCSR299YBY/
***************
biological replicate number: 1
technical replicate number: 2
description: Control Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell.
experiment encode accession: ENCSR299YBY
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB795CSS

value: Bradley Bernstein, Broad


title: Histone ChIP-seq from heart right ventricle (ENCLB595QEB)

description:
https://www.encodeproject.org/experiments/ENCSR379SOG/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on heart right ventricle tissue female adult (59 years).
experiment encode accession: ENCSR379SOG
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR049JKQ
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB595QEB
size range: 200-600

source_name: Homo sapiens female adult (59 years) heart right ventricle tissue

value: heart right ventricle

value: adult

value: 59 year

value: DM:yes; HTN:yes; CAD:no

value: ENCBS637BEQ at ENCODE; https://www.encodeproject.org/ENCBS637BEQ/

value: Derived from ENCODE donor ENCDO856ZOJ; https://www.encodeproject.org/ENCDO856ZOJ/


title: Sample 40 DNB

value: Male

value: Healthy


title: Sample 39 DNB


title: Histone ChIP-seq from heart left ventricle (ENCLB159IVQ)

description:
https://www.encodeproject.org/experiments/ENCSR402JWL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on heart left ventricle tissue male adult (73 years).
experiment encode accession: ENCSR402JWL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR170MJE
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB159IVQ
size range: 200-600

value: tissue

value: male

value: ischemic (EF 35%, LVEDD 5.7; RV mildly dilated, moderate dysfunction)

value: 73 year

value: ENCBS919GVI at ENCODE; https://www.encodeproject.org/ENCBS919GVI/

value: Derived from ENCODE donor ENCDO804CLC; https://www.encodeproject.org/ENCDO804CLC/


title: Sample 38 DNB


title: TF ChIP-seq from heart left ventricle (ENCLB859VXH)

description:
https://www.encodeproject.org/experiments/ENCSR296JFK/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF TF ChIP-seq on heart left ventricle tissue male adult (43 years).
experiment encode accession: ENCSR296JFK
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR109IWL
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB859VXH
size range: 200-600

source_name: Homo sapiens male adult (43 years) heart left ventricle tissue

value: CTCF

value: heart left ventricle

value: 43 year

value: Shin Lin

value: nonischemic (EF 23%, LVEDD 6.1; RV moderate dilation, normal function)

value: ENCBS552CFU at ENCODE; https://www.encodeproject.org/ENCBS552CFU/

value: Derived from ENCODE donor ENCDO967KID; https://www.encodeproject.org/ENCDO967KID/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB311NRM)

description:
https://www.encodeproject.org/experiments/ENCSR379DNM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with mild cognitive impairment.
experiment encode accession: ENCSR379DNM
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR417AQU
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB311NRM
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) with mild cognitive impairment; middle frontal area 46 tissue

value: middle frontal area 46

value: female

value: adult

value: 90 or above year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS173HMY at ENCODE; https://www.encodeproject.org/ENCBS173HMY/

value: Derived from ENCODE donor ENCDO739EFE; https://www.encodeproject.org/ENCDO739EFE/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB481ZAH)

description:
https://www.encodeproject.org/experiments/ENCSR379DNM/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with mild cognitive impairment.
experiment encode accession: ENCSR379DNM
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR417AQU
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB481ZAH
size range: 200-600

value: tissue


title: TF ChIP-seq from heart left ventricle (ENCLB848FHG)

description:
https://www.encodeproject.org/experiments/ENCSR296JFK/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF TF ChIP-seq on heart left ventricle tissue male adult (43 years).
experiment encode accession: ENCSR296JFK
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR109IWL
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB848FHG
size range: 200-600

value: male


title: Control ChIP-seq from middle frontal area 46 (ENCLB381CMB)

description:
https://www.encodeproject.org/experiments/ENCSR295FXG/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with mild cognitive impairment
experiment encode accession: ENCSR295FXG
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-06-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB381CMB
size range: 200-600

value: ENCBS034DIU at ENCODE; https://www.encodeproject.org/ENCBS034DIU/

value: Derived from ENCODE donor ENCDO915WZE; https://www.encodeproject.org/ENCDO915WZE/


title: Control ChIP-seq from middle frontal area 46 (ENCLB603IBC)

description:
https://www.encodeproject.org/experiments/ENCSR293ZPH/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on middle frontal area 46 tissue female adult (87 years)
experiment encode accession: ENCSR293ZPH
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-06-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB603IBC
size range: 200-600

source_name: Homo sapiens female adult (87 years) middle frontal area 46 tissue

value: 87 year

value: ENCBS733LER at ENCODE; https://www.encodeproject.org/ENCBS733LER/

value: Derived from ENCODE donor ENCDO640RUC; https://www.encodeproject.org/ENCDO640RUC/


title: Mint-ChIP-seq from activated CD8-positive, naive alpha-beta T cell (ENCLB669CDA)

description:
https://www.encodeproject.org/experiments/ENCSR392MYU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on activated CD8-positive, naive alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads , 10 ng/mL Interleukin-2
experiment encode accession: ENCSR392MYU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR897UBR
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB669CDA

value: primary cell

value: 30 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein;

value: ENCBS715FVA at ENCODE; https://www.encodeproject.org/ENCBS715FVA/

value: Derived from ENCODE donor ENCDO166AGR; https://www.encodeproject.org/ENCDO166AGR/


title: Sample 37 DNB

value: Male

value: Healthy

value: Base2 (0)


title: Control ChIP-seq from middle frontal area 46 (ENCLB880TIY)

description:
https://www.encodeproject.org/experiments/ENCSR293ZPH/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on middle frontal area 46 tissue female adult (87 years)
experiment encode accession: ENCSR293ZPH
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-06-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB880TIY
size range: 200-600

value: middle frontal area 46

value: tissue

value: female

value: adult

value: Bradley Bernstein, Broad

value: Rush University


title: Histone ChIP-seq from heart left ventricle (ENCLB561QCT)

description:
https://www.encodeproject.org/experiments/ENCSR299NYB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on heart left ventricle tissue female adult (56 years).
experiment encode accession: ENCSR299NYB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR261PLD
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB561QCT
size range: 200-600

value: heart left ventricle

value: PGD

value: 56 year

value: Shin Lin

value: ENCBS906ICM at ENCODE; https://www.encodeproject.org/ENCBS906ICM/

value: Derived from ENCODE donor ENCDO907YUG; https://www.encodeproject.org/ENCDO907YUG/


title: Control ChIP-seq from middle frontal area 46 (ENCLB762SUN)

description:
https://www.encodeproject.org/experiments/ENCSR295FXG/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years) with mild cognitive impairment
experiment encode accession: ENCSR295FXG
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-06-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB762SUN
size range: 200-600

value: 90 or above year

value: ENCBS034DIU at ENCODE; https://www.encodeproject.org/ENCBS034DIU/

value: Derived from ENCODE donor ENCDO915WZE; https://www.encodeproject.org/ENCDO915WZE/


title: Histone ChIP-seq from heart left ventricle (ENCLB251RCE)

description:
https://www.encodeproject.org/experiments/ENCSR378NGK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on heart left ventricle tissue male adult (66 years).
experiment encode accession: ENCSR378NGK
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR061EXX
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB251RCE
size range: 200-600

source_name: Homo sapiens male adult (66 years) heart left ventricle tissue

value: male

value: ischemic (EF 29% LVEDD 5.4; RV normal size, mild dysfunction)

value: 66 year

value: ENCBS966SZA at ENCODE; https://www.encodeproject.org/ENCBS966SZA/

value: Derived from ENCODE donor ENCDO926KEV; https://www.encodeproject.org/ENCDO926KEV/


title: Sample 35 DNB

value: Male

value: Healthy


title: Sample 36 DNB


title: Histone ChIP-seq from heart left ventricle (ENCLB713GCZ)

description:
https://www.encodeproject.org/experiments/ENCSR378NGK/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on heart left ventricle tissue male adult (66 years).
experiment encode accession: ENCSR378NGK
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR061EXX
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB713GCZ
size range: 200-600

value: tissue

value: adult

value: Bradley Bernstein, Broad


title: TF ChIP-seq from middle frontal area 46 (ENCLB017UIU)

description:
https://www.encodeproject.org/experiments/ENCSR378KET/
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biological replicate number: 1
technical replicate number: 1
description: CTCF TF ChIP-seq on middle frontal area 46 tissue male adult (83 years).
experiment encode accession: ENCSR378KET
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR058XPK
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB017UIU
size range: 200-600

source_name: Homo sapiens male adult (83 years) middle frontal area 46 tissue

value: CTCF

value: middle frontal area 46

value: 83 year

value: Rush University

value: ENCBS959TDJ at ENCODE; https://www.encodeproject.org/ENCBS959TDJ/

value: Derived from ENCODE donor ENCDO592ZWW; https://www.encodeproject.org/ENCDO592ZWW/