title: T. canis cerebrum d28 rep 1


title: Control cerebellum d120 rep 1

status: Public on Dec 05 2021

type: RNA

city: Hannover

first: Christina

last: Strube

address: Bünteweg 17

department: Institute for Parasitology

country: Germany

institute: University of Veterinary Medicine Hannover

description: Gene expression in the cerebellum 120 days post infection. Non-infected control group received the vehicle (500µl tap water) only.

hyb_protocol: Cy3- labeled cRNA was hybridized to Agilent´s mouse 4x44k GE microarrays  for 16 h at 68 ºC and scanned using the Agilent DNA Microarray Scanner.

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2505B) according to manufacture´s recommendation

data_processing: The scanned images were analyzed with Feature Extraction Software 9.1 (Agilent) using default parameters (protocol GE1_105_Dec08, GE1_107_Sep09) to obtain background subtracted and spatially detrended Processed Signal intensities.

molecule: total RNA

organism: Mus musculus

source_name: cerebellum, non-infected control

label_protocol: 100 ng of total RNA were applied for Cy3-labelling reaction using the MessageAmp II-Bacteria Kit according to supplier´s recommendation (Ambion). As a result of IVT (in vitro transcription) reaction using aminoallyl-dUTP antisense aRNA were generated and subsequently coupled with fluorescent dye Cy3.

extract_protocol: Total RNA was extracted with the RNeasy® Lipid Tissue Mini kit (Qiagen, Hilden, Germany) according to the manufacturers instructions. On-column Dnase digestion was included in the protocol as described in the manual. RNA was eluted twice with 40 Âµl each time, resulting in a total volume of 80 Âµl RNA/sample. RNA was quantified using a NanoDrop-1000 spectrophotometer and quality was monitored with the Agilent 2100 Bioanalyzer (Agilent Technologies, Waldbronn, Germany).

treatment_protocol: Cerebra and cerebella were stored in RNAlater (Qiagen, Hilden, Germany) upon extraction.

tag: tissue

value: cerebellum

tag: gender

value: Female

tag: infection

value: non-infected control

tag: strain

tag: age

value: 23 weeks


title: Control cerebellum d120 rep 2

value: Male


title: Control cerebellum d98 rep 3

description: Gene expression in the cerebellum 98 days post infection. Non-infected control group received the vehicle (500µl tap water) only.

value: 20 weeks


title: T. canis cerebrum d70 rep 1

description: Gene expression in the cerebrum 70 days post infection. Infection with 2000 embryonated T. canis eggs.

source_name: cerebrum, T. canis-infected

value: cerebrum

value: T. canis-infected

value: 16 weeks


title: Control cerebellum d98 rep 2


title: Control cerebellum d70 rep 3

description: Gene expression in the cerebellum 70 days post infection. Non-infected control group received the vehicle (500µl tap water) only.


title: Control cerebellum d70 rep 2


title: Control cerebellum d70 rep 1


title: T. canis cerebellum d14 rep 1

description: Gene expression in the cerebellum 14 days post infection. Infection with 2000 embryonated T. canis eggs.

source_name: cerebellum, T. canis-infected

value: 8 weeks


title: Control cerebellum d28 rep 3

description: Gene expression in the cerebellum 28 days post infection. Non-infected control group received the vehicle (500µl tap water) only.

value: 10 weeks


title: Control cerebellum d28 rep 2


title: Control cerebellum d28 rep 1


title: Control cerebellum d14 rep 2

description: Gene expression in the cerebellum 14 days post infection. Non-infected control group received the vehicle (500µl tap water) only.


title: Control cerebellum d14 rep 3


title: Control cerebrum d120 rep 3

description: Gene expression in the cerebrum 120 days post infection. Non-infected control group received the vehicle (500µl tap water) only.

source_name: cerebrum, non-infected control


title: Control cerebellum d14 rep 1


title: Control cerebrum d120 rep 1


title: Control cerebrum d98 rep 3

description: Gene expression in the cerebrum 98 days post infection. Non-infected control group received the vehicle (500µl tap water) only.


title: Control cerebellum d120 rep 3


title: Control cerebellum d98 rep 1


title: Control cerebrum d98 rep 1


title: Control cerebrum d70 rep 2

description: Gene expression in the cerebrum 70 days post infection. Non-infected control group received the vehicle (500µl tap water) only.


title: Control cerebrum d14 rep 3

description: Gene expression in the cerebrum 14 days post infection. Non-infected control group received the vehicle (500µl tap water) only.


title: Control cerebrum d28 rep 1

description: Gene expression in the cerebrum 28 days post infection. Non-infected control group received the vehicle (500µl tap water) only.


title: Control cerebrum d98 rep 2


title: Control cerebrum d70 rep 3


title: Control cerebrum d28 rep 2


title: shH2

type: SRA

city: Taichung

first: Shao-Chun

last: Wang

address: No. 6 Xueshi Rd

country: Taiwan

institute: China Medical University Hospital

description: cells harboring tetracycline-inducible shRNA of HOTAIR (Tet-shHOTAIR) under 1ug/ml doxycycline induction for 96hr

library_source: transcriptomic

data_processing:
The reads were aligned with TopHat 2.0.13 to GRCh38 with default parameters and then were assembled by Cufflink 2.2.1, using Ensembl v79 annotations.
Transcript abundance was measured in fragments per kb of exon per million fragments mapped (FPKM).
The differentially expressed genes (DEGs) regulated with HOTAIR were identified by DESeq, a bioconductor package of R language, with the criterion q < 0.05.
We also performed functional enrichment analysis, for DEGs to interpret their biological functions. In brief, we used the topGO and GeneAnswers packages of Bioconductor to calculate the topology of the GO graph.
Genome_build: GRCh38
Supplementary_files_format_and_content: tab-delimited text file includes FPKM values for each Sample

organism: Homo sapiens

source_name: mammary gland

growth_protocol: Cells were routinely plated at cell density of 100000 in DMEM/F-12 medium (Hyclone, Logon, UT) supplemented with 10%FBS and 1% PSA

extract_protocol:
Poly(A) RNA was purified by NEBNext Poly(A) mRNA Magnetic Isolation Module (New England Biolabs, Ipswich, MA) from a total of 1 µg good quality TRIzol-isolated total RNA
Library preparation and deep sequencing were conducted at the Genomics, Epigenomics and Sequencing Core of the University of Cincinnati. RNA-seq library was prepared using PrepX mRNA Library Preparation kit (WaferGen, Fremont, CA) combined Apollo 324 NGS automated library prep system.

treatment_protocol: Cells were induced under 1ug/ml doxycycline for 96hr.

tag: cell line

value: breast cancer cell line MDA-MB 231

tag: cell type

value: epithelial adenocarcinoma

tag: molecular subtype

value: basal-like

tag: treatment

value: shRNA of human HOTAIR


title: shH3


title: shC3

description: cells harboring tetracycline-inducible shRNA of scrambled sequence (Tet-shCtrl) under 1ug/ml doxycycline induction for 96hr

value: control


title: shH1


title: shC1


title: shC2


title: Control cerebrum d28 rep 3


title: Control cerebrum d120 rep 2


title: sgRNA_ZNF6_7 [ZNF6_7_SS4-300637613]

city: Gent

first: Eric

middle: James

last: de Bony de Lavergne

state: <None>

address: 10 corneel heymanslaan, UZ Campus, building Block B, Entry 36

department: Biomolecular Medecine

country: Belgium

institute: University of Ghent

description: Capture sequencing data

data_processing:
FastQC (v0.11.8) was used for data quality control
polyA read-through and low-quality reads were removed via bbduk (BBMap v38.26)
Reads were mapped with STAR (v2.6.0c) against the hg38 reference genome, and gene counts were determined via HTSeq (v.0.11.0)
Genome_build: hg38
Supplementary_files_format_and_content: count table

source_name: HEK293T cell line

growth_protocol: 12,000 cells per well were seeded in 96-well plates (Corning, cat. no. 3596) in 180 µl of RPMI cell culture medium with 10% fetal calf serum

extract_protocol:
72 hours after transfection, cells were lysed with SingleShot lysis buffer
Quantseq (Lexogen)

treatment_protocol: 24 hours after seeding, sgRNAs were transfected with lipofectamine reagent CRISPRMAX

tag: modification

value: sgRNA transfected


title: sgRNA_ZNF6_9 [ZNF6_9_SS4-300643675]

description: Capture sequencing data


title: sgRNA_ZNF6_6 [ZNF6_6_SS4-300637612]

description: Capture sequencing data


title: sgRNA_SOX21_9 [SOX21_9_SS1-300638602]

description: Capture sequencing data


title: sgRNA_ZNF6_8 [ZNF6_8_SS4-300643674]

description: Capture sequencing data


title: Control cerebrum d14 rep 2


title: sgRNA_SOX21_8 [SOX21_8_SS1-300633632]

description: Capture sequencing data


title: sgRNA_ZNF6_1 [ZNF6_1_SS4-300637610]

description: Capture sequencing data


title: sgRNA_ZNF6_10 [ZNF6_10_SS4-300598153]

description: Capture sequencing data


title: sgRNA_SOX21_6 [SOX21_6_SS1-300639549]

description: Capture sequencing data


title: sgRNA_SOX21_4 [SOX21_4_SS1-300640570]

description: Capture sequencing data


title: sgRNA_SOX21_5 [SOX21_5_SS1-300638601]

description: Capture sequencing data


title: sgRNA_ZNF6_3 [ZNF6_3_SS4-300633640]

description: Capture sequencing data


title: Control cerebrum d70 rep 1


title: Control cerebrum d14 rep 1


title: sgRNA_SOX21_7 [SOX21_7_SS1-300641596]

description: Capture sequencing data


title: sgRNA_SOX21_2 [SOX21_2_SS1-300642639]

description: Capture sequencing data


title: sgRNA_SOX21_3 [SOX21_3_SS1-300644573]

description: Capture sequencing data


title: sgRNA_SOX21_10 [SOX21_10_SS1-300641594]

description: Capture sequencing data


title: sgRNA_SOX21_1 [SOX21_1_SS1-300636615]

description: Capture sequencing data


title: sgRNA_SOX2_8 [SOX2_8_SS6-300597135]

description: Capture sequencing data


title: sgRNA_SOX2_9 [SOX2_9_SS6-300640573]

description: Capture sequencing data


title: sgRNA_SOX2_7 [SOX2_7_SS6-300644574]

description: Capture sequencing data


title: sgRNA_SOX2_6 [SOX2_6_SS6-300601948]

description: Capture sequencing data


title: sgRNA_ZNF6_5 [ZNF6_5_SS4-300598154]

description: Capture sequencing data


title: sgRNA_SOX2_4 [SOX2_4_SS6-300635610]

description: Capture sequencing data


title: sgRNA_SOX2_5 [SOX2_5_SS6-300640571]

description: Capture sequencing data


title: sgRNA_ZNF6_4 [ZNF6_4_SS4-300601951]

description: Capture sequencing data


title: sgRNA_ZNF6_2 [ZNF6_2_SS4-300643671]

description: Capture sequencing data


title: sgRNA_SOX2_10 [SOX2_10_SS6-300635609]

description: Capture sequencing data


title: sgRNA_SOX2_3 [SOX2_3_SS6-300633634]

description: Capture sequencing data


title: sgRNA_SOX2_2 [SOX2_2_SS6-300601946]

description: Capture sequencing data


title: sgRNA_SOX2_1 [SOX2_1_SS6-300602962]

description: Capture sequencing data


title: sgRNA_SOX12_7 [SOX12_7_SS6-300633629]

description: Capture sequencing data


title: sgRNA_SOX12_8 [SOX12_8_SS6-300631628]

description: Capture sequencing data


title: sgRNA_SNHG9_9 [SNHG9_9_SS2-300631626]

description: Capture sequencing data


title: sgRNA_SOX12_2 [SOX12_2_SS6-300634554]

description: Capture sequencing data


title: sgRNA_SOX12_3 [SOX12_3_SS6-300601941]

description: Capture sequencing data


title: sgRNA_SOX12_10 [SOX12_10_SS6-300598151]

description: Capture sequencing data


title: sgRNA_SOX12_6 [SOX12_6_SS6-300635605]

description: Capture sequencing data


title: sgRNA_SOX12_5 [SOX12_5_SS6-300643667]

description: Capture sequencing data


title: sgRNA_SOX12_9 [SOX12_9_SS6-300635607]

description: Capture sequencing data


title: sgRNA_SNHG9_8 [SNHG9_8_SS2-300602959]

description: Capture sequencing data


title: sgRNA_SOX12_1 [SOX12_1_SS6-300638600]

description: Capture sequencing data


title: sgRNA_SNHG9_6 [SNHG9_6_SS2-300632589]

description: Capture sequencing data


title: sgRNA_SOX12_4 [SOX12_4_SS6-300601942]

description: Capture sequencing data


title: sgRNA_SNHG9_5 [SNHG9_5_SS2-300637603]

description: Capture sequencing data


title: sgRNA_SNHG9_4 [SNHG9_4_SS2-300602958]

description: Capture sequencing data


title: sgRNA_SNHG9_3 [SNHG9_3_SS2-300635602]

description: Capture sequencing data


title: sgRNA_SNHG9_7 [SNHG9_7_SS2-300643665]

description: Capture sequencing data


title: sgRNA_SNHG9_2 [SNHG9_2_SS2-300641588]

description: Capture sequencing data


title: sgRNA_SNHG9_10 [SNHG9_10_SS2-300638598]

description: Capture sequencing data


title: sgRNA_RP11_834_9 [RP11_834_9_SS1-300636613]

description: Capture sequencing data


title: sgRNA_RP11_834_8 [RP11_834_8_SS1-300644570]

description: Capture sequencing data


title: sgRNA_RP11_834_6 [RP11_834_6_SS1-300640566]

description: Capture sequencing data


title: sgRNA_RP11_834_5 [RP11_834_5_SS1-300640565]

description: Capture sequencing data


title: sgRNA_SNHG9_1 [SNHG9_1_SS2-300642636]

description: Capture sequencing data


title: sgRNA_RP11_834_4 [RP11_834_4_SS1-300641586]

description: Capture sequencing data


title: sgRNA_RP11_834_3 [RP11_834_3_SS1-300598148]

description: Capture sequencing data


title: sgRNA_RP11_834_2 [RP11_834_2_SS1-300637601]

description: Capture sequencing data


title: sgRNA_RP11_834_1 [RP11_834_1_SS1-300638595]

description: Capture sequencing data


title: sgRNA_RP11_834_10 [RP11_834_10_SS1-300642635]

description: Capture sequencing data


title: sgRNA_RP11_706_8 [RP11_706_8_SS5-300602955]

description: Capture sequencing data


title: sgRNA_RP11_706_7 [RP11_706_7_SS5-300602954]

description: Capture sequencing data


title: P_48_M0

city: Paris

first: Marjolaine

last: Ngollo

address: 1 avenue Claude Vellefaux

department: Gastroenterology

country: France

institute: INSERM

hyb_protocol: Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45°C on human genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the GeneArray Scanner G2500A.

data_processing: The Affymetrix raw data were processed to obtain a log2 expression value for each gene probe set using the robust multichip average (RMA) method implemented in R.

label: Biotin

source_name: Inflamed ileum area

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 15 ug total RNA (GeneChip™ 3' IVT PLUS Reagent Kit Assay Manual Workflow, Affymetrix).

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: Total RNA was isolated using TRizol reagent and purified using RNeasy micro kit (Qiagen), according to the manufacturer’s instructions. Purity and integrity of the total RNA were assessed with the Caliper LabChip GX High-Throughput Bioanalyzer (Life Sciences) and then quantified using the NanoDrop 2000 Spectrophotometer.

tag: location

tag: smoking

value: Yes

tag: postoperative anti tnf treatment

tag: rutgeerts

tag: rutgeertrec

value: Rec


title: sgRNA_RP11_834_7 [RP11_834_7_SS1-300639541]

description: Capture sequencing data


title: sgRNA_RP11_706_9 [RP11_706_9_SS5-300644569]

description: Capture sequencing data


title: sgRNA_RP11_706_5 [RP11_706_5_SS5-300631624]

description: Capture sequencing data


title: P_48_MI

source_name: Ileal margin area

value: Female


title: sgRNA_RP11_706_6 [RP11_706_6_SS5-300636611]

description: Capture sequencing data


title: P_48_M6

source_name: Neoterminal ileum


title: P_121_M0

value: No

value: Rem


title: P_133_MI


title: P_133_M0


title: P_42_MI

value: Male


title: P_42_M6


title: P_133_M6


title: P_121_MI


title: sgRNA_RP11_706_3 [RP11_706_3_SS5-300644566]

description: Capture sequencing data


title: P_42_M0


title: sgRNA_RP11_706_4 [RP11_706_4_SS5-300644567]

description: Capture sequencing data


title: P_116_M0


title: sgRNA_RP11_706_10 [RP11_706_10_SS5-300632588]

description: Capture sequencing data


title: sgRNA_RP11_706_2 [RP11_706_2_SS5-300637600]

description: Capture sequencing data


title: sgRNA_RP11_706_1 [RP11_706_1_SS5-300643659]

description: Capture sequencing data


title: sgRNA_RP11_67L_8 [RP11_67L_8_SS3-300598145]

description: Capture sequencing data


title: sgRNA_RP11_67L_9 [RP11_67L_9_SS3-300601938]

description: Capture sequencing data


title: sgRNA_RP11_67L_7 [RP11_67L_7_SS3-300637599]

description: Capture sequencing data


title: sgRNA_RP11_67L_6 [RP11_67L_6_SS3-300602950]

description: Capture sequencing data


title: T. canis cerebellum d120 rep 3

description: Gene expression in the cerebellum 120 days post infection. Infection with 2000 embryonated T. canis eggs.

value: cerebellum

value: 23 weeks


title: sgRNA_RP11_67L_3 [RP11_67L_3_SS3-300597125]

description: Capture sequencing data


title: sgRNA_RP11_67L_2 [RP11_67L_2_SS3-300638592]

description: Capture sequencing data


title: sgRNA_RP11_67L_10 [RP11_67L_10_SS3-300637598]

description: Capture sequencing data


title: sgRNA_RP11_67L_1 [RP11_67L_1_SS3-300632587]

description: Capture sequencing data


title: sgRNA_RP11_526_9 [RP11_526_9_SS1-300634549]

description: Capture sequencing data


title: sgRNA_RP11_526_8 [RP11_526_8_SS1-300635599]

description: Capture sequencing data


title: sgRNA_RP11_526_7 [RP11_526_7_SS1-300631622]

description: Capture sequencing data


title: sgRNA_RP11_67L_5 [RP11_67L_5_SS3-300631623]

description: Capture sequencing data


title: sgRNA_RP11_526_6 [RP11_526_6_SS1-300633620]

description: Capture sequencing data


title: P_116_MI


title: P_143_MI


title: sgRNA_RP11_67L_4 [RP11_67L_4_SS3-300643653]

description: Capture sequencing data


title: P_143_M6


title: P_143_M0


title: P_63_M0


title: P_62_M0


title: P_171_M0


title: P_169_MI


title: P_62_MI


title: P_169_M0


title: P_63_MI


title: P_51_M0


title: P_51_MI


title: P_169_M6


title: P_140_MI


title: P_171_MI


title: P_66_M0


title: sgRNA_RP11_526_5 [RP11_526_5_SS1-300633619]

description: Capture sequencing data


title: sgRNA_RP11_526_4 [RP11_526_4_SS1-300601937]

description: Capture sequencing data


title: P_140_M0


title: P_66_MI


title: sgRNA_RP11_526_10 [RP11_526_10_SS1-300633618]

description: Capture sequencing data


title: sgRNA_RP11_526_3 [RP11_526_3_SS1-300636608]

description: Capture sequencing data


title: sgRNA_RP11_497H_9 [RP11_497H_9_SS3-300632585]

description: Capture sequencing data


title: sgRNA_RP11_526_1 [RP11_526_1_SS1-300634547]

description: Capture sequencing data


title: sgRNA_RP11_497H_8 [RP11_497H_8_SS3-300639537]

description: Capture sequencing data


title: P_59_M0


title: sgRNA_RP11_497H_6 [RP11_497H_6_SS3-300631619]

description: Capture sequencing data


title: P_51_M6


title: sgRNA_RP11_497H_4 [RP11_497H_4_SS3-300642629]

description: Capture sequencing data


title: sgRNA_RP11_497H_3 [RP11_497H_3_SS3-300644563]

description: Capture sequencing data


title: sgRNA_RP11_497H_5 [RP11_497H_5_SS3-300636606]

description: Capture sequencing data


title: sgRNA_RP11_526_2 [RP11_526_2_SS1-300601936]

description: Capture sequencing data


title: sgRNA_RP11_497H_10 [RP11_497H_10_SS3-300641584]

description: Capture sequencing data


title: P_194_M0


title: P_161_M6


title: P_58_M0


title: P_58_M6


title: P_59_MI


title: sgRNA_RP11_497H_1 [RP11_497H_1_SS3-300601932]

description: Capture sequencing data


title: sgRNA_RP11_332_9 [RP11_332_9_SS3-300643647]

description: Capture sequencing data


title: P_194_M6


title: P_75_M0


title: P_161_MI


title: sgRNA_RP11_497H_7 [RP11_497H_7_SS3-300636607]

description: Capture sequencing data


title: sgRNA_RP11_332_8 [RP11_332_8_SS3-300643646]

description: Capture sequencing data


title: P_75_MI


title: P_57_MI


title: sgRNA_RP11_332_7 [RP11_332_7_SS3-300634541]

description: Capture sequencing data


title: sgRNA_RP11_332_6 [RP11_332_6_SS3-300643644]

description: Capture sequencing data


title: sgRNA_RP11_332_5 [RP11_332_5_SS3-300601931]

description: Capture sequencing data


title: sgRNA_RP11_497H_2 [RP11_497H_2_SS3-300601933]

description: Capture sequencing data


title: sgRNA_RP11_332_4 [RP11_332_4_SS3-300631616]

description: Capture sequencing data


title: P_161_M0


title: P_85_MI


title: sgRNA_RP11_332_3 [RP11_332_3_SS3-300640559]

description: Capture sequencing data


title: P_85_M0


title: P_125_M0


title: P_75_M6


title: P_57_M0


title: P_85_M6


title: sgRNA_RP11_332_2 [RP11_332_2_SS3-300598139]

description: Capture sequencing data


title: sgRNA_RP11_332_10 [RP11_332_10_SS3-300631613]

description: Capture sequencing data


title: P_83_M0


title: P_83_MI


title: sgRNA_RP11_332_1 [RP11_332_1_SS3-300640558]

description: Capture sequencing data


title: sgRNA_RP11_258_8 [RP11_258_8_SS4-300637591]

description: Capture sequencing data


title: P_81_M0


title: P_47_M6


title: sgRNA_RP11_258_5 [RP11_258_5_SS4-300598137]

description: Capture sequencing data


title: sgRNA_RP11_258_4 [RP11_258_4_SS4-300635595]

description: Capture sequencing data


title: P_72_M0


title: P_47_MI


title: P_135_M0


title: sgRNA_RP11_258_3 [RP11_258_3_SS4-300636599]

description: Capture sequencing data


title: P_204_M0


title: P_47_M0


title: sgRNA_RP11_258_2 [RP11_258_2_SS4-300635593]

description: Capture sequencing data


title: P_81_MI


title: sgRNA_RP11_258_6 [RP11_258_6_SS4-300633616]

description: Capture sequencing data


title: sgRNA_RP11_258_1 [RP11_258_1_SS4-300644556]

description: Capture sequencing data


title: P_79_M0


title: sgRNA_RP11_253_9 [RP11_253_9_SS1-300637588]

description: Capture sequencing data


title: sgRNA_RP11_258_9 [RP11_258_9_SS4-300634538]

description: Capture sequencing data


title: P_124_M6


title: sgRNA_RP11_258_10 [RP11_258_10_SS4-300643642]

description: Capture sequencing data


title: sgRNA_RP11_258_7 [RP11_258_7_SS4-300631610]

description: Capture sequencing data


title: sgRNA_RP11_253_7 [RP11_253_7_SS1-300638584]

description: Capture sequencing data


title: sgRNA_RP11_253_6 [RP11_253_6_SS1-300636598]

description: Capture sequencing data


title: sgRNA_RP11_253_5 [RP11_253_5_SS1-300642624]

description: Capture sequencing data


title: P_124_M0


title: P_67_M6


title: P_67_MI


title: sgRNA_RP11_253_4 [RP11_253_4_SS1-300635590]

description: Capture sequencing data


title: sgRNA_RP11_253_10 [RP11_253_10_SS1-300638582]

description: Capture sequencing data


title: P_170_MI


title: sgRNA_RP11_253_3 [RP11_253_3_SS1-300643641]

description: Capture sequencing data


title: sgRNA_RP11_121C_9 [RP11_121C_9_SS3-300598132]

description: Capture sequencing data


title: sgRNA_RP11_253_1 [RP11_253_1_SS1-300634531]

description: Capture sequencing data


title: P_170_M6


title: sgRNA_RP11_253_8 [RP11_253_8_SS1-300639533]

description: Capture sequencing data


title: sgRNA_RP11_121C_8 [RP11_121C_8_SS3-300636595]

description: Capture sequencing data


title: P_170_M0


title: P_100_M0


title: sgRNA_RP11_121C_7 [RP11_121C_7_SS3-300640553]

description: Capture sequencing data


title: P_93_M0


title: P_93_MI


title: sgRNA_RP11_121C_6 [RP11_121C_6_SS3-300641578]

description: Capture sequencing data


title: P_41_M0


title: sgRNA_RP11_253_2 [RP11_253_2_SS1-300644554]

description: Capture sequencing data


title: P_202_MI


title: P_41_M6


title: P_202_M0


title: P_18_M0


title: P_41_MI


title: sgRNA_RP11_121C_4 [RP11_121C_4_SS3-300633614]

description: Capture sequencing data


title: sgRNA_RP11_121C_5 [RP11_121C_5_SS3-300637584]

description: Capture sequencing data


title: sgRNA_RP11_121C_2 [RP11_121C_2_SS3-300640552]

description: Capture sequencing data


title: sgRNA_RP11_121C_3 [RP11_121C_3_SS3-300643637]

description: Capture sequencing data


title: sgRNA_RP11_121C_10 [RP11_121C_10_SS3-300643636]

description: Capture sequencing data


title: sgRNA_RP11_121C_1 [RP11_121C_1_SS3-300601924]

description: Capture sequencing data


title: P_18_MI


title: P_18_M6


title: P_44_M0


title: P_44_MI


title: P_44_M6


title: sgRNA_RHOB_8 [RHOB_8_SS6-300635587]

description: Capture sequencing data


title: P_118_MI


title: P_145_M0


title: P_37_MI


title: sgRNA_RHOB_6 [RHOB_6_SS6-300602943]

description: Capture sequencing data


title: sgRNA_RHOB_5 [RHOB_5_SS6-300644551]

description: Capture sequencing data


title: P_118_M0


title: P_37_M0


title: sgRNA_RHOB_7 [RHOB_7_SS6-300643635]

description: Capture sequencing data


title: sgRNA_RHOB_4 [RHOB_4_SS6-300643634]

description: Capture sequencing data


title: P_37_M6


title: sgRNA_RHOB_2 [RHOB_2_SS6-300642616]

description: Capture sequencing data


title: sgRNA_RHOB_3 [RHOB_3_SS6-300632576]

description: Capture sequencing data


title: sgRNA_RHOB_9 [RHOB_9_SS6-300633613]

description: Capture sequencing data


title: sgRNA_RHOB_10 [RHOB_10_SS6-300598130]

description: Capture sequencing data


title: sgRNA_PROPRO2 [PROPRO2_SS6_2-300639530]

description: Capture sequencing data


title: sgRNA_RHOB_1 [RHOB_1_SS6-300635586]

description: Capture sequencing data


title: sgRNA_PROPRO2 [PROPRO2_SS6_1-300633610]

description: Capture sequencing data


title: P_128_M0


title: P_115_M0


title: P_128_M6


title: P_115_MI


title: P_113_M0


title: sgRNA_PROPRO2 [PROPRO2_SS5_1-300644546]

description: Capture sequencing data


title: P_113_MI


title: P_113_M6


title: P_127_MI


title: sgRNA_PROPRO2 [PROPRO2_SS4_1-300634529]

description: Capture sequencing data


title: sgRNA_PROPRO2 [PROPRO2_SS4_2-300601921]

description: Capture sequencing data


title: sgRNA_PROPRO2 [PROPRO2_SS3_1-300637582]

description: Capture sequencing data


title: P_127_M0


title: sgRNA_PROPRO2 [PROPRO2_SS2_2-300632575]

description: Capture sequencing data


title: sgRNA_PROPRO2 [PROPRO2_SS2_1-300638578]

description: Capture sequencing data


title: P_117_M0


title: P_19_M6


title: P_106_MI


title: sgRNA_PROPRO2 [PROPRO2_SS1_2-300640549]

description: Capture sequencing data


title: P_19_M0


title: sgRNA_PROPRO2 [PROPRO2_SS1_1-300597109]

description: Capture sequencing data


title: P_106_M0


title: P_117_MI


title: P_106_M6


title: P_105_MI


title: P_105_M0


title: P_97_MI


title: P_19_MI


title: sgRNA_PROPRO1 [PROPRO1_SS6_2-300601920]

description: Capture sequencing data


title: sgRNA_PROPRO1 [PROPRO1_SS5_1-300631599]

description: Capture sequencing data


title: sgRNA_PROPRO1 [PROPRO1_SS5_2-300597108]

description: Capture sequencing data


title: sgRNA_PROPRO1 [PROPRO1_SS4_2-300643631]

description: Capture sequencing data


title: sgRNA_PROPRO2 [PROPRO2_SS3_2-300640550]

description: Capture sequencing data


title: sgRNA_PROPRO1 [PROPRO1_SS4_1-300642615]

description: Capture sequencing data


title: P_175_M6


title: P_97_M0


title: P_175_MI


title: sgRNA_PROPRO1 [PROPRO1_SS3_1-300644543]

description: Capture sequencing data


title: sgRNA_PROPRO1 [PROPRO1_SS2_2-300601919]

description: Capture sequencing data


title: P_73_M6


title: sgRNA_PROPRO1 [PROPRO1_SS6_1-300644544]

description: Capture sequencing data


title: sgRNA_PROPRO1 [PROPRO1_SS2_1-300643629]

description: Capture sequencing data


title: P_147_M0


title: sgRNA_PROPRO1 [PROPRO1_SS1_2-300601918]

description: Capture sequencing data


title: P_147_M6


title: sgRNA_PROPRO1 [PROPRO1_SS1_1-300635583]

description: Capture sequencing data


title: sgRNA_PROPRO2 [PROPRO2_SS5_2-300601922]

description: Capture sequencing data


title: P_146_M0


title: sgRNA_PROPRO1 [PROPRO1_SS3_2-300635585]

description: Capture sequencing data


title: sgRNA_PAXIP1_7 [PAXIP1_7_SS4-300601917]

description: Capture sequencing data


title: sgRNA_PAXIP1_9 [PAXIP1_9_SS4-300632574]

description: Capture sequencing data


title: sgRNA_PAXIP1_8 [PAXIP1_8_SS4-300641571]

description: Capture sequencing data


title: sgRNA_PAXIP1_5 [PAXIP1_5_SS4-300633607]

description: Capture sequencing data


title: P_146_MI


title: P_73_M0


title: sgRNA_PAXIP1_6 [PAXIP1_6_SS4-300642614]

description: Capture sequencing data


title: P_73_MI


title: sgRNA_PAXIP1_4 [PAXIP1_4_SS4-300639526]

description: Capture sequencing data


title: P_J_CTRL

source_name: Ileum

value: Ctrl


title: P_82_MI


title: P_82_M6


title: sgRNA_PAXIP1_3 [PAXIP1_3_SS4-300643627]

description: Capture sequencing data


title: sgRNA_PAXIP1_2 [PAXIP1_2_SS4-300597105]

description: Capture sequencing data


title: sgRNA_PAXIP1_1 [PAXIP1_1_SS4-300642613]

description: Capture sequencing data


title: P_82_M0


title: P_33_M6


title: sgRNA_NEAT1 [NEAT1_SS6_2-300635581]

description: Capture sequencing data


title: P_172_M0


title: sgRNA_NEAT1 [NEAT1_SS6_1-300642611]

description: Capture sequencing data


title: P_67_M0


title: sgRNA_NEAT1 [NEAT1_SS5_2-300640545]

description: Capture sequencing data


title: P_54_M0


title: P_178_M0


title: P_172_M6


title: P_172_MI


title: P_54_M6


title: sgRNA_NEAT1 [NEAT1_SS5_1-300634525]

description: Capture sequencing data


title: P_109_M0


title: P_95_MI


title: sgRNA_NEAT1 [NEAT1_SS4_2-300637581]

description: Capture sequencing data


title: sgRNA_NEAT1 [NEAT1_SS4_1-300635580]

description: Capture sequencing data


title: sgRNA_PAXIP1_10 [PAXIP1_10_SS4-300631597]

description: Capture sequencing data


title: P_33_M0


title: P_95_M0


title: sgRNA_NEAT1 [NEAT1_SS3_1-300634523]

description: Capture sequencing data


title: P_65_M0


title: sgRNA_NEAT1 [NEAT1_SS2_2-300642609]

description: Capture sequencing data


title: P_65_MI


title: P_88_M0


title: P_43_M0


title: sgRNA_NEAT1 [NEAT1_SS2_1-300643626]

description: Capture sequencing data


title: P_43_MI


title: P_4_M6


title: sgRNA_NEAT1 [NEAT1_SS1_2-300642608]

description: Capture sequencing data


title: sgRNA_NC2 [NC2_SS6_2-300633605]

description: Capture sequencing data


title: sgRNA_NEAT1 [NEAT1_SS1_1-300644540]

description: Capture sequencing data


title: sgRNA_NC2 [NC2_SS6_1-300598125]

description: Capture sequencing data


title: sgRNA_NEAT1 [NEAT1_SS3_2-300642610]

description: Capture sequencing data


title: sgRNA_NC2 [NC2_SS5_1-300598124]

description: Capture sequencing data


title: sgRNA_NC2 [NC2_SS4_1-300633603]

description: Capture sequencing data


title: sgRNA_NC2 [NC2_SS4_2-300634522]

description: Capture sequencing data


title: sgRNA_NC2 [NC2_SS3_1-300637580]

description: Capture sequencing data


title: P_4_M0


title: sgRNA_NC2 [NC2_SS3_2-300643624]

description: Capture sequencing data


title: P_70_M0


title: sgRNA_NC2 [NC2_SS2_2-300642606]

description: Capture sequencing data


title: P_77_M6


title: P_92_M0


title: P_77_M0


title: P_77_MI


title: P_142_M0


title: P_142_MI


title: P_70_MI


title: sgRNA_NC2 [NC2_SS1_2-300602938]

description: Capture sequencing data


title: P_129_M6


title: sgRNA_NC2 [NC2_SS2_1-300631595]

description: Capture sequencing data


title: P_129_M0


title: sgRNA_NC2 [NC2_SS5_2-300639525]

description: Capture sequencing data


title: sgRNA_NC2 [NC2_SS1_1-300642605]

description: Capture sequencing data


title: sgRNA_NC1 [NC1_SS6_2-300643622]

description: Capture sequencing data


title: P_1_MI


title: sgRNA_NC1 [NC1_SS6_1-300631593]

description: Capture sequencing data


title: sgRNA_NC1 [NC1_SS5_2-300640544]

description: Capture sequencing data


title: P_1_M6


title: P_1_M0


title: sgRNA_NC1 [NC1_SS5_1-300597099]

description: Capture sequencing data


title: sgRNA_NC1 [NC1_SS4_2-300638565]

description: Capture sequencing data


title: P_14_M6


title: sgRNA_NC1 [NC1_SS4_1-300641565]

description: Capture sequencing data


title: P_14_M0


title: sgRNA_NC1 [NC1_SS3_2-300638564]

description: Capture sequencing data


title: P_3_MI


title: sgRNA_NC1 [NC1_SS2_2-300634520]

description: Capture sequencing data


title: P_3_M6


title: sgRNA_NC1 [NC1_SS1_2-300637571]

description: Capture sequencing data


title: sgRNA_NC1 [NC1_SS1_1-300632569]

description: Capture sequencing data


title: sgRNA_Mock [Mock_SS6_1-300640539]

description: Capture sequencing data


title: P_3_M0


title: sgRNA_NC1 [NC1_SS2_1-300643620]

description: Capture sequencing data


title: P_14_MI


title: sgRNA_Mock [Mock_SS5_2-300597094]

description: Capture sequencing data


title: P_165_M0


title: P_23_M6


title: sgRNA_Mock [Mock_SS5_1-300635574]

description: Capture sequencing data


title: P_166_MI


title: P_165_M6


title: P_165_MI


title: sgRNA_Mock [Mock_SS4_2-300631591]

description: Capture sequencing data


title: P_218_M6


title: P_166_M0


title: sgRNA_NC1 [NC1_SS3_1-300637574]

description: Capture sequencing data


title: sgRNA_Mock [Mock_SS4_1-300637568]

description: Capture sequencing data


title: P_111_M6


title: sgRNA_Mock [Mock_SS3_2-300643615]

description: Capture sequencing data


title: sgRNA_Mock [Mock_SS3_1-300644536]

description: Capture sequencing data


title: sgRNA_Mock [Mock_SS2_2-300643614]

description: Capture sequencing data


title: sgRNA_Mock [Mock_SS2_1-300633596]

description: Capture sequencing data


title: P_23_M0


title: P_111_M0


title: P_108_M0


title: sgRNA_MALAT1_9 [MALAT1_9_SS6-300636580]

description: Capture sequencing data


title: sgRNA_MALAT1_8 [MALAT1_8_SS6-300636577]

description: Capture sequencing data


title: sgRNA_Mock [Mock_SS1_2-300597090]

description: Capture sequencing data


title: P_108_M6


title: P_7_M6


title: sgRNA_MALAT1_7 [MALAT1_7_SS6-300641559]

description: Capture sequencing data


title: P_218_MI


title: sgRNA_MALAT1_5 [MALAT1_5_SS6-300641558]

description: Capture sequencing data


title: P_218_M0


title: sgRNA_MALAT1_4 [MALAT1_4_SS6-300642601]

description: Capture sequencing data


title: P_71_M0


title: sgRNA_MALAT1_6 [MALAT1_6_SS6-300636576]

description: Capture sequencing data


title: P_7_M0


title: sgRNA_MALAT1_3 [MALAT1_3_SS6-300642600]

description: Capture sequencing data


title: P_71_M6


title: P_108_MI


title: P_195_M0


title: P_195_MI


title: sgRNA_Mock [Mock_SS1_1-300642602]

description: Capture sequencing data


title: P_7_MI


title: sgRNA_MALAT1_2 [MALAT1_2_SS6-300642599]

description: Capture sequencing data


title: P_27_M6


title: P_27_MI


title: sgRNA_MALAT1_10 [MALAT1_10_SS6-300640535]

description: Capture sequencing data


title: P_195_M6


title: sgRNA_MALAT1_1 [MALAT1_1_SS6-300643612]

description: Capture sequencing data


title: P_102_MI


title: P_102_M6


title: sgRNA_LINC00909_8 [LINC00909_8_SS2-300633595]

description: Capture sequencing data


title: sgRNA_LINC00909_6 [LINC00909_6_SS2-300634510]

description: Capture sequencing data


title: sgRNA_LINC00909_7 [LINC00909_7_SS2-300638554]

description: Capture sequencing data


title: sgRNA_LINC00909_5 [LINC00909_5_SS2-300640532]

description: Capture sequencing data


title: sgRNA_LINC00909_4 [LINC00909_4_SS2-300633593]

description: Capture sequencing data


title: P_183_M6


title: sgRNA_LINC00909_3 [LINC00909_3_SS2-300634509]

description: Capture sequencing data


title: sgRNA_LINC00909_9 [LINC00909_9_SS2-300642598]

description: Capture sequencing data


title: sgRNA_LINC00909_10 [LINC00909_10_SS2-300634508]

description: Capture sequencing data


title: P_99_M0


title: P_102_M0


title: P_183_MI


title: P_216_MI


title: P_13_M6


title: P_13_M0


title: P_183_M0


title: sgRNA_linc00630_9 [linc00630_9_SS5-300635611]

description: Capture sequencing data


title: P_13_MI


title: P_162_M0


title: sgRNA_linc00630_5 [linc00630_5_SS5-300642645]

description: Capture sequencing data


title: sgRNA_LINC00909_2 [LINC00909_2_SS2-300638551]

description: Capture sequencing data


title: P_98_M0


title: P_155_MI


title: sgRNA_linc00630_6 [linc00630_6_SS5-300642647]

description: Capture sequencing data


title: P_216_M0


title: sgRNA_linc00630_4 [linc00630_4_SS5-300631634]

description: Capture sequencing data


title: sgRNA_linc00630_7 [linc00630_7_SS5-300640577]

description: Capture sequencing data


title: sgRNA_linc00630_3 [linc00630_3_SS5-300644579]

description: Capture sequencing data


title: P_176_MI


title: sgRNA_LINC00909_1 [LINC00909_1_SS2-300602928]

description: Capture sequencing data


title: P_176_M6


title: P_176_M0


title: P_69_MI


title: sgRNA_linc00630_2 [linc00630_2_SS5-300598155]

description: Capture sequencing data


title: sgRNA_linc00630_1 [linc00630_1_SS5-300642643]

description: Capture sequencing data


title: sgRNA_Mock [Mock_SS6_2-300638563]

description: Capture sequencing data


title: sgRNA_linc00630_8 [linc00630_8_SS5-300632594]

description: Capture sequencing data


title: sgRNA_linc00630_10 [linc00630_10_SS5-300643676]

description: Capture sequencing data


title: P_162_MI


title: sgRNA_JUN_8 [JUN_8_SS5-300636573]

description: Capture sequencing data


title: sgRNA_JUN_9 [JUN_9_SS5-300598115]

description: Capture sequencing data


title: sgRNA_JUN_7 [JUN_7_SS5-300634505]

description: Capture sequencing data


title: sgRNA_JUN_6 [JUN_6_SS5-300638550]

description: Capture sequencing data


title: P_155_M0


title: P_8_M6


title: P_8_M0


title: P_8_MI


title: sgRNA_JUN_4 [JUN_4_SS5-300597086]

description: Capture sequencing data


title: sgRNA_JUN_10 [JUN_10_SS5-300642591]

description: Capture sequencing data


title: sgRNA_JUN_2 [JUN_2_SS5-300642592]

description: Capture sequencing data


title: sgRNA_JUN_5 [JUN_5_SS5-300643607]

description: Capture sequencing data


title: P_69_M0


title: sgRNA_JUN_1 [JUN_1_SS5-300643604]

description: Capture sequencing data


title: P_179_M6


title: sgRNA_FAM215B_8 [FAM215B_8_SS2-300642590]

description: Capture sequencing data


title: sgRNA_FAM215B_9 [FAM215B_9_SS2-300641557]

description: Capture sequencing data


title: P_144_M6


title: P_144_M0


title: P_179_MI


title: sgRNA_FAM215B_7 [FAM215B_7_SS2-300633586]

description: Capture sequencing data


title: sgRNA_FAM215B_6 [FAM215B_6_SS2-300640530]

description: Capture sequencing data


title: sgRNA_JUN_3 [JUN_3_SS5-300643605]

description: Capture sequencing data


title: P_132_M0


title: P_132_MI


title: P_131_M0


title: P_179_M0


title: P_131_MI


title: P_131_M6


title: P_119_MI


title: P_188_M6


title: P_188_MI


title: P_119_M0


title: sgRNA_FAM215B_5 [FAM215B_5_SS2-300601898]

description: Capture sequencing data


title: sgRNA_FAM215B_3 [FAM215B_3_SS2-300597085]

description: Capture sequencing data


title: P_114_M0


title: sgRNA_FAM215B_2 [FAM215B_2_SS2-300639514]

description: Capture sequencing data


title: sgRNA_DPH1 [DPH1_SS6_2-300602925]

description: Capture sequencing data


title: sgRNA_DPH1 [DPH1_SS6_1-300634502]

description: Capture sequencing data


title: sgRNA_FAM215B_10 [FAM215B_10_SS2-300631584]

description: Capture sequencing data


title: P_114_MI


title: sgRNA_DPH1 [DPH1_SS5_2-300637562]

description: Capture sequencing data


title: sgRNA_FAM215B_4 [FAM215B_4_SS2-300642588]

description: Capture sequencing data


title: P_141_M0


title: sgRNA_DPH1 [DPH1_SS4_2-300631581]

description: Capture sequencing data


title: sgRNA_DPH1 [DPH1_SS4_1-300636570]

description: Capture sequencing data


title: sgRNA_DPH1 [DPH1_SS3_2-300634500]

description: Capture sequencing data


title: P_36_MI


title: P_197_M0


title: sgRNA_DPH1 [DPH1_SS3_1-300635569]

description: Capture sequencing data


title: P_17_M0


title: P_197_M6


title: P_17_M6


title: sgRNA_FAM215B_1 [FAM215B_1_SS2-300640529]

description: Capture sequencing data


title: P_36_M6


title: sgRNA_DPH1 [DPH1_SS2_1-300631579]

description: Capture sequencing data


title: sgRNA_DPH1 [DPH1_SS5_1-300637561]

description: Capture sequencing data


title: sgRNA_DPH1 [DPH1_SS1_1-300598112]

description: Capture sequencing data


title: sgRNA_DNAJC3_9 [DNAJC3_9_SS5-300597083]

description: Capture sequencing data


title: P_187_M6


title: P_187_MI


title: P_193_M6


title: P_193_M0


title: P_168_M0


title: sgRNA_DNAJC3_8 [DNAJC3_8_SS5-300637558]

description: Capture sequencing data


title: P_36_M0


title: P_112_M6


title: P_112_M0


title: sgRNA_DNAJC3_7 [DNAJC3_7_SS5-300636567]

description: Capture sequencing data


title: sgRNA_DNAJC3_5 [DNAJC3_5_SS5-300641552]

description: Capture sequencing data


title: sgRNA_DPH1 [DPH1_SS2_2-300643602]

description: Capture sequencing data


title: sgRNA_DNAJC3_6 [DNAJC3_6_SS5-300641553]

description: Capture sequencing data


title: sgRNA_DNAJC3_3 [DNAJC3_3_SS5-300636566]

description: Capture sequencing data


title: sgRNA_DNAJC3_4 [DNAJC3_4_SS5-300643600]

description: Capture sequencing data


title: sgRNA_DNAJC3_2 [DNAJC3_2_SS5-300637557]

description: Capture sequencing data


title: P_112_MI


title: P_196_MI


title: P_30_MI


title: P_196_M6


title: sgRNA_DNAJC3_1 [DNAJC3_1_SS5-300640527]

description: Capture sequencing data


title: sgRNA_DNAJC3_10 [DNAJC3_10_SS5-300639509]

description: Capture sequencing data


title: P_137_M0


title: P_192_M0


title: sgRNA_CTC_8 [CTC_8_SS2-300602920]

description: Capture sequencing data


title: sgRNA_CTC_7 [CTC_7_SS2-300602919]

description: Capture sequencing data


title: P_192_M6


title: sgRNA_CTC_9 [CTC_9_SS2-300633578]

description: Capture sequencing data


title: sgRNA_CTC_6 [CTC_6_SS2-300642586]

description: Capture sequencing data


title: P_137_MI


title: P_126_M0


title: sgRNA_CTC_5 [CTC_5_SS2-300636565]

description: Capture sequencing data


title: sgRNA_CTC_4 [CTC_4_SS2-300635567]

description: Capture sequencing data


title: sgRNA_CTC_3 [CTC_3_SS2-300635565]

description: Capture sequencing data


title: sgRNA_CTC_2 [CTC_2_SS2-300639508]

description: Capture sequencing data


title: P_191_M6


title: P_126_MI


title: P_191_M0


title: sgRNA_CTC_10 [CTC_10_SS2-300637555]

description: Capture sequencing data


title: sgRNA_CTC_1 [CTC_1_SS2-300598110]

description: Capture sequencing data


title: P_186_MI


title: P_104_MI


title: sgRNA_ANTIPRO3_SS6_1 [ANTIPRO3_SS6_1-300637554]

description: Capture sequencing data


title: sgRNA_ANTIPRO3_SS6_2 [ANTIPRO3_SS6_2-300636564]

description: Capture sequencing data


title: P_103_MI


title: P_103_M0


title: P_163_M6


title: sgRNA_ANTIPRO3_SS5_1 [ANTIPRO3_SS5_1-300639507]

description: Capture sequencing data


title: sgRNA_ANTIPRO3_SS4_2 [ANTIPRO3_SS4_2-300598108]

description: Capture sequencing data


title: sgRNA_ANTIPRO3_SS4_1 [ANTIPRO3_SS4_1-300602918]

description: Capture sequencing data


title: P_104_M0


title: sgRNA_ANTIPRO3_SS3_1 [ANTIPRO3_SS3_1-300601890]

description: Capture sequencing data


title: P_190_M0


title: sgRNA_ANTIPRO3_SS2_2 [ANTIPRO3_SS2_2-300632560]

description: Capture sequencing data


title: P_190_M6


title: P_185_M0


title: P_163_M0


title: P_185_MI


title: P_185_M6


title: P_136_MI


title: sgRNA_ANTIPRO3_SS2_1 [ANTIPRO3_SS2_1-300601889]

description: Capture sequencing data


title: sgRNA_ANTIPRO3_SS5_2 [ANTIPRO3_SS5_2-300598109]

description: Capture sequencing data


title: sgRNA_ANTIPRO3_SS1_2 [ANTIPRO3_SS1_2-300642584]

description: Capture sequencing data


title: P_136_M0


title: sgRNA_ANTIPRO3_SS1_1 [ANTIPRO3_SS1_1-300643599]

description: Capture sequencing data


title: P_189_M6


title: sgRNA_ANTIPRO2_SS6_2 [ANTIPRO2_SS6_2-300644527]

description: Capture sequencing data


title: P_189_M0


title: sgRNA_ANTIPRO3_SS3_2 [ANTIPRO3_SS3_2-300642585]

description: Capture sequencing data


title: sgRNA_ANTIPRO2_SS5_2 [ANTIPRO2_SS5_2-300598106]

description: Capture sequencing data


title: P_2_MI


title: P_2_M6


title: sgRNA_ANTIPRO2_SS4_2 [ANTIPRO2_SS4_2-300634498]

description: Capture sequencing data


title: P_150_M0


title: P_2_M0


title: sgRNA_ANTIPRO2_SS3_2 [ANTIPRO2_SS3_2-300635564]

description: Capture sequencing data


title: P_199_M0


title: P_149_M6


title: sgRNA_ANTIPRO2_SS3_1 [ANTIPRO2_SS3_1-300634497]

description: Capture sequencing data


title: sgRNA_ANTIPRO2_SS4_1 [ANTIPRO2_SS4_1-300637553]

description: Capture sequencing data


title: P_149_MI


title: sgRNA_ANTIPRO2_SS5_1 [ANTIPRO2_SS5_1-300598105]

description: Capture sequencing data


title: P_148_M0


title: sgRNA_ANTIPRO2_SS2_2 [ANTIPRO2_SS2_2-300633577]

description: Capture sequencing data


title: sgRNA_ANTIPRO2_SS1_1 [ANTIPRO2_SS1_1-300633576]

description: Capture sequencing data


title: sgRNA_ANTIPRO2_SS1_2 [ANTIPRO2_SS1_2-300601888]

description: Capture sequencing data


title: sgRNA_ANTIPRO2_SS2_1 [ANTIPRO2_SS2_1-300638543]

description: Capture sequencing data


title: sgRNA_ANTIPRO2_SS6_1 [ANTIPRO2_SS6_1-300598107]

description: Capture sequencing data


title: sgRNA_ANTIPRO1_SS6_2 [ANTIPRO1_SS6_2-300633574]

description: Capture sequencing data


title: P_181_MI


title: P_148_MI


title: P_180_M6


title: sgRNA_ANTIPRO1_SS6_1 [ANTIPRO1_SS6_1-300631577]

description: Capture sequencing data


title: sgRNA_ANTIPRO1_SS5_2 [ANTIPRO1_SS5_2-300640526]

description: Capture sequencing data


title: P_53_MI


title: sgRNA_ANTIPRO1_SS4_2 [ANTIPRO1_SS4_2-300631576]

description: Capture sequencing data


title: sgRNA_ANTIPRO1_SS4_1 [ANTIPRO1_SS4_1-300635563]

description: Capture sequencing data


title: P_149_M0


title: P_68_MI


title: P_68_M0


title: P_40_M6


title: sgRNA_ANTIPRO1_SS3_1 [ANTIPRO1_SS3_1-300636563]

description: Capture sequencing data


title: P_40_MI


title: P_180_M0


title: P_180_MI


title: sgRNA_ANTIPRO1_SS1_2 [ANTIPRO1_SS1_2-300602917]

description: Capture sequencing data


title: sgRNA_ANTIPRO1_SS2_1 [ANTIPRO1_SS2_1-300637552]

description: Capture sequencing data


title: sgRNA_ANTIPRO1_SS1_1 [ANTIPRO1_SS1_1-300634496]

description: Capture sequencing data


title: P_40_M0


title: P_39_M0


title: P_5_MI


title: sgRNA_AC083843_9 [AC083843_9_SS4-300598104]

description: Capture sequencing data


title: P_174_M0


title: sgRNA_ANTIPRO1_SS3_2 [ANTIPRO1_SS3_2-300597080]

description: Capture sequencing data


title: P_39_MI


title: sgRNA_AC083843_8 [AC083843_8_SS4-300597079]

description: Capture sequencing data


title: sgRNA_ANTIPRO1_SS5_1 [ANTIPRO1_SS5_1-300639503]

description: Capture sequencing data


title: sgRNA_ANTIPRO1_SS2_2 [ANTIPRO1_SS2_2-300638540]

description: Capture sequencing data


title: sgRNA_AC083843_7 [AC083843_7_SS4-300597078]

description: Capture sequencing data


title: P_174_MI


title: P_5_M6


title: P_5_M0


title: P_39_M6


title: sgRNA_AC083843_6 [AC083843_6_SS4-300639502]

description: Capture sequencing data


title: sgRNA_AC083843_5 [AC083843_5_SS4-300641547]

description: Capture sequencing data


title: sgRNA_AC083843_4 [AC083843_4_SS4-300644526]

description: Capture sequencing data


title: sgRNA_AC083843_2 [AC083843_2_SS4-300602916]

description: Capture sequencing data


title: sgRNA_AC083843_3 [AC083843_3_SS4-300644525]

description: Capture sequencing data


title: sgRNA_ZNF6_9 [ZNF6_9_SS4-280121977]

description: NO capture sequencing data


title: P_52_M0


title: sgRNA_DPH1 [DPH1_SS1_2-300631578]

description: Capture sequencing data


title: P_52_MI


title: sgRNA_AC083843_10 [AC083843_10_SS4-300601887]

description: Capture sequencing data


title: P_52_M6


title: P_120_MI


title: P_6_M0


title: sgRNA_ZNF6_8 [ZNF6_8_SS4-280081788]

description: NO capture sequencing data


title: P_6_M6


title: sgRNA_ZNF6_7 [ZNF6_7_SS4-280123945]

description: NO capture sequencing data


title: P_15_M6


title: P_120_M0


title: sgRNA_ZNF6_6 [ZNF6_6_SS4-280081787]

description: NO capture sequencing data


title: sgRNA_ZNF6_3 [ZNF6_3_SS4-280081785]

description: NO capture sequencing data


title: sgRNA_ZNF6_4 [ZNF6_4_SS4-280086766]

description: NO capture sequencing data


title: sgRNA_AC083843_1 [AC083843_1_SS4-300602915]

description: Capture sequencing data


title: sgRNA_ZNF6_5 [ZNF6_5_SS4-280128849]

description: NO capture sequencing data


title: P_30_M0


title: P_38_MI


title: P_15_M0


title: sgRNA_ZNF6_10 [ZNF6_10_SS4-280091800]

description: NO capture sequencing data


title: sgRNA_ZNF6_2 [ZNF6_2_SS4-280121976]

description: NO capture sequencing data


title: P_34_M0


title: P_15_MI


title: P_34_MI


title: P_38_M6


title: sgRNA_SOX21_7 [SOX21_7_SS1bis-280091797]

description: NO capture sequencing data


title: P_38_M0


title: P_34_M6


title: sgRNA_SOX21_6 [SOX21_6_SS1bis-280087788]

description: NO capture sequencing data


title: sgRNA_ZNF6_1 [ZNF6_1_SS4-280123943]

description: NO capture sequencing data


title: sgRNA_SOX21_8 [SOX21_8_SS1bis-280121973]

description: NO capture sequencing data


title: sgRNA_SOX21_4 [SOX21_4_SS1bis-280120956]

description: NO capture sequencing data


title: sgRNA_SOX21_3 [SOX21_3_SS1bis-280081782]

description: NO capture sequencing data


title: P_11_M6


title: P_28_M0


title: P_11_MI


title: sgRNA_SOX21_2 [SOX21_2_SS1bis-280086761]

description: NO capture sequencing data


title: sgRNA_SOX21_1 [SOX21_1_SS1bis-280123939]

description: NO capture sequencing data


title: sgRNA_SOX21_9 [SOX21_9_SS1bis-280122936]

description: NO capture sequencing data


title: sgRNA_SOX21_10 [SOX21_10_SS1bis-280121972]

description: NO capture sequencing data


title: P_28_MI


title: sgRNA_SOX2_8 [SOX2_8_SS6-280127877]

description: NO capture sequencing data


title: P_11_M0


title: P_28_M6


title: sgRNA_SOX2_7 [SOX2_7_SS6-280123942]

description: NO capture sequencing data


title: P_74_MI


title: P_74_M0


title: sgRNA_SOX21_5 [SOX21_5_SS1bis-280127875]

description: NO capture sequencing data


title: P_160_M0


title: P_76_MI


title: P_76_M0


title: P_160_M6


title: sgRNA_SOX2_6 [SOX2_6_SS6-280120958]

description: NO capture sequencing data


title: sgRNA_SOX2_4 [SOX2_4_SS6-280093580]

description: NO capture sequencing data


title: P_184_M0


title: sgRNA_SOX2_3 [SOX2_3_SS6-280126877]

description: NO capture sequencing data


title: sgRNA_SOX2_5 [SOX2_5_SS6-280092727]

description: NO capture sequencing data


title: sgRNA_SOX2_9 [SOX2_9_SS6-280092729]

description: NO capture sequencing data


title: P_184_MI


title: sgRNA_SOX2_10 [SOX2_10_SS6-280121974]

description: NO capture sequencing data


title: sgRNA_SOX2_1 [SOX2_1_SS6-280123940]

description: NO capture sequencing data


title: sgRNA_SOX2_2 [SOX2_2_SS6-280090807]

description: NO capture sequencing data


title: sgRNA_SOX12_9 [SOX12_9_SS6-280093579]

description: NO capture sequencing data


title: P_49_M6


title: P_12_M0


title: sgRNA_SOX12_7 [SOX12_7_SS6-280120955]

description: NO capture sequencing data


title: sgRNA_SOX12_8 [SOX12_8_SS6-280087787]

description: NO capture sequencing data


title: P_49_MI


title: P_12_MI


title: sgRNA_SOX12_5 [SOX12_5_SS6-280121971]

description: NO capture sequencing data


title: P_157_MI


title: sgRNA_SOX12_6 [SOX12_6_SS6-280090805]

description: NO capture sequencing data


title: P_157_M0


title: sgRNA_SOX12_3 [SOX12_3_SS6-280081781]

description: NO capture sequencing data


title: sgRNA_SOX12_4 [SOX12_4_SS6-280093578]

description: NO capture sequencing data


title: P_24_M6


title: sgRNA_SOX12_2 [SOX12_2_SS6-280121970]

description: NO capture sequencing data


title: sgRNA_SOX12_10 [SOX12_10_SS6-280087785]

description: NO capture sequencing data


title: sgRNA_SNHG9_9 [SNHG9_9_SS2bis-280081780]

description: NO capture sequencing data


title: sgRNA_SOX12_1 [SOX12_1_SS6-280087786]

description: NO capture sequencing data


title: P_24_M0


title: sgRNA_SNHG9_8 [SNHG9_8_SS2bis-280086759]

description: NO capture sequencing data


title: P_53_M0


title: sgRNA_SNHG9_7 [SNHG9_7_SS2bis-280120952]

description: NO capture sequencing data


title: P_25_M6


title: P_49_M0


title: P_25_M0


title: sgRNA_SNHG9_6 [SNHG9_6_SS2bis-280087784]

description: NO capture sequencing data


title: P_X_IC


title: P_12_M6


title: sgRNA_SNHG9_5 [SNHG9_5_SS2bis-280086758]

description: NO capture sequencing data


title: P18_IC


title: P_215_M6


title: P_160_MI


title: P_214_MI


title: P_214_M0


title: P_I_CTRL


title: sgRNA_SNHG9_2 [SNHG9_2_SS2bis-280081778]

description: NO capture sequencing data


title: P_215_M0


title: sgRNA_SNHG9_10 [SNHG9_10_SS2bis-280081777]

description: NO capture sequencing data


title: sgRNA_SNHG9_4 [SNHG9_4_SS2-280126874]

description: NO capture sequencing data


title: P_134_MI


title: sgRNA_SNHG9_3 [SNHG9_3_SS2-280091792]

description: NO capture sequencing data


title: P_134_M6


title: sgRNA_SNHG9_1 [SNHG9_1_SS2bis-280088807]

description: NO capture sequencing data


title: P_134_M0


title: P_22_M0


title: sgRNA_RP11_834_8 [RP11_834_8_SS1bis-280122935]

description: NO capture sequencing data


title: P_22_M6


title: sgRNA_RP11_834_9 [RP11_834_9_SS1bis-280121968]

description: NO capture sequencing data


title: sgRNA_RP11_834_6 [RP11_834_6_SS1bis-280084800]

description: NO capture sequencing data


title: sgRNA_RP11_834_7 [RP11_834_7_SS1bis-280123936]

description: NO capture sequencing data


title: P44_IC


title: sgRNA_RP11_834_5 [RP11_834_5_SS1bis-280084799]

description: NO capture sequencing data


title: P_H_CTRL


title: sgRNA_RP11_834_10 [RP11_834_10_SS1bis-280081775]

description: NO capture sequencing data


title: P_T_IC


title: sgRNA_RP11_706_9 [RP11_706_9_SS5-280087781]

description: NO capture sequencing data


title: sgRNA_RP11_706_8 [RP11_706_8_SS5-280091790]

description: NO capture sequencing data


title: P_213_MI


title: sgRNA_RP11_834_4 [RP11_834_4_SS1bis-280093577]

description: NO capture sequencing data


title: P_74_M6


title: P_22_MI


title: P_220_MI


title: P_213_M0


title: P_212_M0


title: P_220_M6


title: sgRNA_RP11_834_3 [RP11_834_3_SS1bis-280087782]

description: NO capture sequencing data


title: sgRNA_RP11_706_6 [RP11_706_6_SS5-280127874]

description: NO capture sequencing data


title: P_220_M0


title: P_E_CTRL


title: sgRNA_RP11_834_2 [RP11_834_2_SS1bis-280088805]

description: NO capture sequencing data


title: sgRNA_RP11_834_1 [RP11_834_1_SS1bis-280125884]

description: NO capture sequencing data


title: P_212_M6


title: P_G_CTRL


title: sgRNA_RP11_706_2 [RP11_706_2_SS5-280122933]

description: NO capture sequencing data


title: sgRNA_RP11_706_5 [RP11_706_5_SS5-280127873]

description: NO capture sequencing data


title: sgRNA_RP11_706_7 [RP11_706_7_SS5-280090803]

description: NO capture sequencing data


title: sgRNA_RP11_706_3 [RP11_706_3_SS5-280127870]

description: NO capture sequencing data


title: P_212_MI


title: P_213_M6


title: sgRNA_RP11_67L_7 [RP11_67L_7_SS3-280092719]

description: NO capture sequencing data


title: P_32_MI


title: sgRNA_RP11_706_1 [RP11_706_1_SS5-280127869]

description: NO capture sequencing data


title: P_32_M0


title: P_211_M0


title: P_F_CTRL


title: P11_IC


title: P_64_M0


title: P_64_MI


title: P17_IC


title: sgRNA_RP11_67L_5 [RP11_67L_5_SS3-280081772]

description: NO capture sequencing data


title: sgRNA_RP11_706_4 [RP11_706_4_SS5-280084796]

description: NO capture sequencing data


title: P_31_M0


title: sgRNA_RP11_67L_10 [RP11_67L_10_SS3-280092717]

description: NO capture sequencing data


title: P_31_M6


title: sgRNA_RP11_67L_1 [RP11_67L_1_SS3-280122931]

description: NO capture sequencing data


title: sgRNA_RP11_67L_3 [RP11_67L_3_SS3-280086752]

description: NO capture sequencing data


title: sgRNA_RP11_526_8 [RP11_526_8_SS1bis-280123935]

description: NO capture sequencing data


title: sgRNA_RP11_526_7 [RP11_526_7_SS1bis-280123934]

description: NO capture sequencing data


title: sgRNA_RP11_526_6 [RP11_526_6_SS1bis-280086749]

description: NO capture sequencing data


title: sgRNA_RP11_526_5 [RP11_526_5_SS1bis-280092716]

description: NO capture sequencing data


title: sgRNA_RP11_526_4 [RP11_526_4_SS1bis-280093575]

description: NO capture sequencing data


title: sgRNA_RP11_526_2 [RP11_526_2_SS1bis-280088802]

description: NO capture sequencing data


title: P_61_M0


title: P_76_M6


title: P_D_CTRL


title: P_210_M0


title: P_S_IC


title: P_209_M0


title: P_139_MI


title: sgRNA_RP11_67L_8 [RP11_67L_8_SS3-280127867]

description: NO capture sequencing data


title: sgRNA_RP11_497H_9 [RP11_497H_9_SS3-280093571]

description: NO capture sequencing data


title: sgRNA_RP11_67L_6 [RP11_67L_6_SS3-280090802]

description: NO capture sequencing data


title: P_139_M6


title: sgRNA_RP11_706_10 [RP11_706_10_SS5-280084795]

description: NO capture sequencing data


title: sgRNA_RP11_497H_7 [RP11_497H_7_SS3-280084792]

description: NO capture sequencing data


title: P_32_M6


title: sgRNA_RP11_67L_9 [RP11_67L_9_SS3-280086753]

description: NO capture sequencing data


title: sgRNA_RP11_67L_4 [RP11_67L_4_SS3-280091788]

description: NO capture sequencing data


title: sgRNA_RP11_67L_2 [RP11_67L_2_SS3-280124911]

description: NO capture sequencing data


title: P_208_M6


title: P_31_MI


title: P_207_M6


title: P_61_MI


title: P_60_M0


title: sgRNA_RP11_526_9 [RP11_526_9_SS1bis-280088803]

description: NO capture sequencing data


title: sgRNA_RP11_497H_3 [RP11_497H_3_SS3-280087778]

description: NO capture sequencing data


title: sgRNA_RP11_497H_1 [RP11_497H_1_SS3-280081771]

description: NO capture sequencing data


title: sgRNA_RP11_526_3 [RP11_526_3_SS1bis-280123933]

description: NO capture sequencing data


title: P_207_MI


title: P_207_M0


title: sgRNA_RP11_526_10 [RP11_526_10_SS1bis-280120946]

description: NO capture sequencing data


title: P_139_M0


title: P_138_M0


title: P_210_M6


title: sgRNA_RP11_332_8 [RP11_332_8_SS3-280093569]

description: NO capture sequencing data


title: sgRNA_RP11_332_7 [RP11_332_7_SS3-280120942]

description: NO capture sequencing data


title: P_209_MI


title: sgRNA_RP11_497H_8 [RP11_497H_8_SS3-280121963]

description: NO capture sequencing data


title: sgRNA_RP11_526_1 [RP11_526_1_SS1bis-280126869]

description: NO capture sequencing data


title: sgRNA_RP11_497H_6 [RP11_497H_6_SS3-280122928]

description: NO capture sequencing data


title: sgRNA_RP11_497H_5 [RP11_497H_5_SS3-280125882]

description: NO capture sequencing data


title: sgRNA_RP11_497H_4 [RP11_497H_4_SS3-280086745]

description: NO capture sequencing data


title: sgRNA_RP11_497H_10 [RP11_497H_10_SS3-280120944]

description: NO capture sequencing data


title: sgRNA_RP11_497H_2 [RP11_497H_2_SS3-280087777]

description: NO capture sequencing data


title: sgRNA_RP11_332_9 [RP11_332_9_SS3-280091786]

description: NO capture sequencing data


title: sgRNA_RP11_332_5 [RP11_332_5_SS3-280092711]

description: NO capture sequencing data


title: P_138_M6


title: sgRNA_RP11_332_2 [RP11_332_2_SS3-280081768]

description: NO capture sequencing data


title: sgRNA_RP11_332_1 [RP11_332_1_SS3-280086744]

description: NO capture sequencing data


title: sgRNA_RP11_258_7 [RP11_258_7_SS4-280123929]

description: NO capture sequencing data


title: P_177_M6


title: P_60_MI


title: sgRNA_RP11_332_6 [RP11_332_6_SS3-280079746]

description: NO capture sequencing data


title: sgRNA_RP11_258_5 [RP11_258_5_SS4-280087773]

description: NO capture sequencing data


title: P_208_M0


title: P_35_MI


title: sgRNA_RP11_332_4 [RP11_332_4_SS3-280088798]

description: NO capture sequencing data


title: P_110_MI


title: sgRNA_RP11_332_3 [RP11_332_3_SS3-280124906]

description: NO capture sequencing data


title: sgRNA_RP11_332_10 [RP11_332_10_SS3-280125878]

description: NO capture sequencing data


title: sgRNA_RP11_258_3 [RP11_258_3_SS4-280120939]

description: NO capture sequencing data


title: sgRNA_RP11_258_10 [RP11_258_10_SS4-280126865]

description: NO capture sequencing data


title: sgRNA_RP11_258_8 [RP11_258_8_SS4-280121959]

description: NO capture sequencing data


title: sgRNA_RP11_258_2 [RP11_258_2_SS4-280081766]

description: NO capture sequencing data


title: P_35_M0


title: P_206_MI


title: P_110_M6


title: P_C_CTRL


title: P_205_MI


title: sgRNA_RP11_258_6 [RP11_258_6_SS4-280125876]

description: NO capture sequencing data


title: P_206_M6


title: P_206_M0


title: P_110_M0


title: P_177_MI


title: P_B_CTRL


title: P48_IC


title: P_29_M6


title: P16_IC


title: P_101_M0


title: P_107_M0


title: P_205_M0


title: sgRNA_RP11_258_4 [RP11_258_4_SS4-280084786]

description: NO capture sequencing data


title: P_217_MI


title: sgRNA_RP11_258_9 [RP11_258_9_SS4-280092709]

description: NO capture sequencing data


title: P_U_IC


title: sgRNA_RP11_253_8 [RP11_253_8_SS1bis-280127858]

description: NO capture sequencing data


title: sgRNA_RP11_253_7 [RP11_253_7_SS1bis-280092708]

description: NO capture sequencing data


title: sgRNA_RP11_253_4 [RP11_253_4_SS1bis-280123926]

description: NO capture sequencing data


title: sgRNA_RP11_253_5 [RP11_253_5_SS1bis-280122915]

description: NO capture sequencing data


title: sgRNA_RP11_253_6 [RP11_253_6_SS1bis-280121956]

description: NO capture sequencing data


title: sgRNA_RP11_258_1 [RP11_258_1_SS4-280091779]

description: NO capture sequencing data


title: P_29_MI


title: P_107_MI


title: sgRNA_RP11_253_3 [RP11_253_3_SS1bis-280084785]

description: NO capture sequencing data


title: P_29_M0


title: sgRNA_RP11_253_9 [RP11_253_9_SS1bis-280088796]

description: NO capture sequencing data


title: P_203_M6


title: sgRNA_RP11_253_2 [RP11_253_2_SS1bis-280125871]

description: NO capture sequencing data


title: sgRNA_RP11_253_10 [RP11_253_10_SS1bis-280125869]

description: NO capture sequencing data


title: sgRNA_RP11_253_1 [RP11_253_1_SS1bis-280079741]

description: NO capture sequencing data


title: sgRNA_RP11_121C_8 [RP11_121C_8_SS3-280079739]

description: NO capture sequencing data


title: P_203_M0


title: sgRNA_RP11_121C_9 [RP11_121C_9_SS3-280124902]

description: NO capture sequencing data


title: P_35_M6


title: P_159_MI


title: sgRNA_RP11_121C_4 [RP11_121C_4_SS3-280122913]

description: NO capture sequencing data


title: sgRNA_RP11_121C_5 [RP11_121C_5_SS3-280093563]

description: NO capture sequencing data


title: P_159_M0


title: P_159_M6


title: P_177_M0


title: P_94_M0


title: P_26_M6


title: P_94_M6


title: sgRNA_RP11_121C_7 [RP11_121C_7_SS3-280125867]

description: NO capture sequencing data


title: sgRNA_RP11_121C_3 [RP11_121C_3_SS3-280122912]

description: NO capture sequencing data


title: sgRNA_RP11_121C_10 [RP11_121C_10_SS3-280125866]

description: NO capture sequencing data


title: P_94_MI


title: sgRNA_RP11_121C_6 [RP11_121C_6_SS3-280090795]

description: NO capture sequencing data


title: sgRNA_RP11_121C_2 [RP11_121C_2_SS3-280123924]

description: NO capture sequencing data


title: P_91_MI


title: P_26_M0


title: sgRNA_RHOB_9 [RHOB_9_SS6-280127854]

description: NO capture sequencing data


title: sgRNA_RHOB_6 [RHOB_6_SS6-280120934]

description: NO capture sequencing data


title: sgRNA_RP11_121C_1 [RP11_121C_1_SS3-280120935]

description: NO capture sequencing data


title: sgRNA_RHOB_4 [RHOB_4_SS6-280090793]

description: NO capture sequencing data


title: P_201_M0


title: P_91_M6


title: sgRNA_RHOB_7 [RHOB_7_SS6-280088790]

description: NO capture sequencing data


title: P_201_M6


title: P_90_MI


title: P_89_M0


title: P_201_MI


title: sgRNA_RHOB_3 [RHOB_3_SS6-280123923]

description: NO capture sequencing data


title: P_26_MI


title: sgRNA_RHOB_8 [RHOB_8_SS6-280091775]

description: NO capture sequencing data


title: P_89_MI


title: P_90_M0


title: P_V_IC


title: P_153_MI


title: P_91_M0


title: P40_IC


title: sgRNA_RHOB_5 [RHOB_5_SS6-280092704]

description: NO capture sequencing data


title: P_156_M6


title: P_156_M0


title: P_153_M0


title: P_153_M6


title: sgRNA_RHOB_10 [RHOB_10_SS6-280081761]

description: NO capture sequencing data


title: sgRNA_RHOB_2 [RHOB_2_SS6-280092701]

description: NO capture sequencing data


title: sgRNA_PROPRO2 [PROPRO2_SS5_1-280092700]

description: NO capture sequencing data


title: sgRNA_RHOB_1 [RHOB_1_SS6-280093561]

description: NO capture sequencing data


title: P_10_M0


title: sgRNA_PROPRO2 [PROPRO2_SS3_2-280084782]

description: NO capture sequencing data


title: sgRNA_PROPRO2 [PROPRO2_SS3_1-280125863]

description: NO capture sequencing data


title: P_200_M6


title: P_10_M6


title: P_200_M0


title: P_151_MI


title: sgRNA_PROPRO2 [PROPRO2_SS6_1-280123922]

description: NO capture sequencing data


title: P_10_MI


title: P_182_MI


title: sgRNA_PROPRO2 [PROPRO2_SS2bis_1-280121949]

description: NO capture sequencing data


title: P_151_M0


title: sgRNA_PROPRO2 [PROPRO2_SS4_2-280124896]

description: NO capture sequencing data


title: sgRNA_PROPRO2 [PROPRO2_SS1bis_1-280123921]

description: NO capture sequencing data


title: sgRNA_PROPRO2 [PROPRO2_SS1bis_2-280120930]

description: NO capture sequencing data


title: sgRNA_PROPRO1 [PROPRO1_SS6_2-280125861]

description: NO capture sequencing data


title: sgRNA_PROPRO2 [PROPRO2_SS6_2-280127853]

description: NO capture sequencing data


title: sgRNA_PROPRO2 [PROPRO2_SS4_1-280088788]

description: NO capture sequencing data


title: sgRNA_PROPRO1 [PROPRO1_SS6_1-280079733]

description: NO capture sequencing data


title: P_87_M0


title: P_182_M0


title: sgRNA_PROPRO1 [PROPRO1_SS5_2-280090788]

description: NO capture sequencing data


title: sgRNA_PROPRO1 [PROPRO1_SS5_1-280126859]

description: NO capture sequencing data


title: P_21_M6


title: sgRNA_PROPRO1 [PROPRO1_SS4_1-280127852]

description: NO capture sequencing data


title: sgRNA_PROPRO1 [PROPRO1_SS4_2-280084778]

description: NO capture sequencing data


title: P_W_IC


title: P_R_IC


title: sgRNA_PROPRO1 [PROPRO1_SS3_2-280091769]

description: NO capture sequencing data


title: P_56_M0


title: sgRNA_PROPRO2 [PROPRO2_SS5_2-280121950]

description: NO capture sequencing data


title: sgRNA_PROPRO2 [PROPRO2_SS2bis_2-280081758]

description: NO capture sequencing data


title: P_21_M0


title: sgRNA_PROPRO1 [PROPRO1_SS3_1-280079731]

description: NO capture sequencing data


title: sgRNA_PROPRO1 [PROPRO1_SS2bis_1-280125857]

description: NO capture sequencing data


title: sgRNA_PROPRO1 [PROPRO1_SS2bis_2-280125859]

description: NO capture sequencing data


title: sgRNA_PROPRO1 [PROPRO1_SS1bis_2-280124895]

description: NO capture sequencing data


title: sgRNA_PAXIP1_8 [PAXIP1_8_SS4-280121945]

description: NO capture sequencing data


title: sgRNA_PAXIP1_9 [PAXIP1_9_SS4-280127851]

description: NO capture sequencing data


title: P_46_M0


title: P29_IC


title: P_87_MI


title: sgRNA_PAXIP1_7 [PAXIP1_7_SS4-280121944]

description: NO capture sequencing data


title: P_46_MI


title: P_80_M0


title: P_46_M6


title: sgRNA_PAXIP1_6 [PAXIP1_6_SS4-280086731]

description: NO capture sequencing data


title: P_A_CTRL


title: P_20_M0


title: P_84_M0


title: P_80_M6


title: sgRNA_PAXIP1_4 [PAXIP1_4_SS4-280086730]

description: NO capture sequencing data


title: sgRNA_PAXIP1_5 [PAXIP1_5_SS4-280081754]

description: NO capture sequencing data


title: P_20_M6


title: P_198_M0


title: sgRNA_PAXIP1_2 [PAXIP1_2_SS4-280092699]

description: NO capture sequencing data


title: sgRNA_PAXIP1_3 [PAXIP1_3_SS4-280086729]

description: NO capture sequencing data


title: sgRNA_PAXIP1_10 [PAXIP1_10_SS4-280124892]

description: NO capture sequencing data


title: P_45_M6


title: P_16_M0


title: P_45_MI


title: sgRNA_PROPRO1 [PROPRO1_SS1bis_1-280090787]

description: NO capture sequencing data


title: P_16_M6


title: sgRNA_NEAT1 [NEAT1_SS6_2-280086728]

description: NO capture sequencing data


title: sgRNA_PAXIP1_1 [PAXIP1_1_SS4-280093556]

description: NO capture sequencing data


title: sgRNA_NEAT1 [NEAT1_SS5_2-280121942]

description: NO capture sequencing data


title: sgRNA_NEAT1 [NEAT1_SS5_1-280090786]

description: NO capture sequencing data


title: Murine GBM Tumor sample 5 [GFPpos_3F_101]

city: New York

first: Mungunsarnai

last: Ganbold

state: NYC

address: 417 East 68st

department: Brain Tumor Center

country: USA

institute: MSKCC

description:
SMARTerAmpSeq
mouseGBM_bulkRNA_GFPsort.csv

data_processing:
All single-cell 3' RNA-seq data were processed from raw fastq files to count matrices with SEQC (see https://github.com/dpeerlab/seqc)
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

source_name: mouse glioblastoma cells

extract_protocol:
Mouse brain was dissected, and tumor tissues were dissociated into single cells and FACS sorted for live cells. Human PDX tumor cells were further processed on ChromiumTM instrument (10X Genomics) after mouse cell depletion.
RNA libraries were amplified with SMARTerAmpSeq kit for buk RNA sequencing, or  prepared following the manual “Single Cell 3’ Reagent Kits v2 User Guide” (CG00052 Rev E) provided by the 10X Genomics for single cell RNA sequencing.

tag: tumor grade

value: glioblastoma

value: untreated


title: Murine GBM Tumor sample 7 [GFPpos_3F_103]


title: Murine GBM Tumor sample 8 [GFPneg_3F5]


title: Murine GBM Tumor sample 6 [GFPpos_3F_102]


title: Murine GBM Tumor sample 4 [GFPpos_3F_95]


title: Murine GBM Tumor sample 7 [GFPneg_3F_103]


title: sgRNA_NEAT1 [NEAT1_SS6_1-280126854]

description: NO capture sequencing data


title: Murine GBM Tumor sample 8 [GFPpos_3F5]


title: sgRNA_NEAT1 [NEAT1_SS2bis_2-280121940]

description: NO capture sequencing data


title: Murine GBM Tumor sample 6 [GFPneg_3F_102]


title: sgRNA_NEAT1 [NEAT1_SS3_2-280084775]

description: NO capture sequencing data


title: sgRNA_NEAT1 [NEAT1_SS3_1-280093553]

description: NO capture sequencing data


title: Murine GBM Tumor sample 5 [GFPneg_3F_101]


title: Murine GBM Tumor sample 4 [GFPneg_3F_95]


title: sgRNA_NEAT1 [NEAT1_SS2bis_1-280088781]

description: NO capture sequencing data


title: Murine GBM Tumor sample 3 [GFPpos_3F_93]


title: sgRNA_NEAT1 [NEAT1_SS4_1-280093554]

description: NO capture sequencing data


title: sgRNA_NEAT1 [NEAT1_SS1bis_1-280121938]

description: NO capture sequencing data


title: Murine GBM Tumor sample 3 [GFPneg_3F_93]


title: Murine GBM Tumor sample 2 [GFPpos_3F_92]


title: sgRNA_NC2 [NC2_SS6_2-280092695]

description: NO capture sequencing data


title: sgRNA_NEAT1 [NEAT1_SS1bis_2-280091765]

description: NO capture sequencing data


title: P_45_M0


title: Murine GBM Tumor sample 2 [GFPneg_3F_92]


title: Murine GBM Tumor sample 1 [GFPpos_3F_86]


title: sgRNA_NC2 [NC2_SS6_1-280084774]

description: NO capture sequencing data


title: Murine GBM Tumor sample 1 [GFPneg_3F_86]


title: sgRNA_NEAT1 [NEAT1_SS4_2-280088784]

description: NO capture sequencing data


title: sgRNA_NC2 [NC2_SS5_2-280126852]

description: NO capture sequencing data


title: sgRNA_NC2 [NC2_SS4_2-280090780]

description: NO capture sequencing data


title: YF_pDCs_D28 3

city: Stanford

first: Madeleine

last: Scott

state: CA

address: 729 Lagunita Dr

institute: Stanford

data_processing:
Cellranger 3.1.0
Seurat 3.6.3 used for all downstream processing
Genome_build: mm10
Supplementary_files_format_and_content: gene expression matrices (mtx)

source_name: lymph node

extract_protocol:
PBMC isolation directly after blood sample collection
10x Single Cell 3' v3

value: lymph node

tag: day

tag: flow sort category

value: pDCs

value: YF


title: YF_pDCs_D28 4

tag: tissue


title: YF_pDCs_D28 1


title: sgRNA_NC2 [NC2_SS4_1-280088780]

description: NO capture sequencing data


title: sgRNA_NC2 [NC2_SS3_1-280087762]

description: NO capture sequencing data


title: 3M-052_pDCs_D28 4


title: sgRNA_NC2 [NC2_SS3_2-280123913]

description: NO capture sequencing data


title: 3M-052_pDCs_D28 3


title: YF_pDCs_D28 2


title: YF_pDCs_D28 5


title: 3M-052_pDCs_D28 2


title: sgRNA_NC2 [NC2_SS2bis_1-280091763]

description: NO capture sequencing data


title: sgRNA_NC2 [NC2_SS1bis_2-280092690]

description: NO capture sequencing data


title: 3M-052_pDCs_D28 1


title: sgRNA_NC2 [NC2_SS2bis_2-280083803]

description: NO capture sequencing data


title: sgRNA_NC2 [NC2_SS1bis_1-280084770]

description: NO capture sequencing data


title: YF_Ly6c_D28 5


title: sgRNA_NC1 [NC1_SS6_2-280084769]

description: NO capture sequencing data


title: sgRNA_NC1 [NC1_SS6_1-280084768]

description: NO capture sequencing data


title: YF_Ly6c_D28 3


title: YF_Ly6c_D28 2


title: YF_Ly6c_D28 1


title: sgRNA_NC1 [NC1_SS5_1-280083802]

description: NO capture sequencing data


title: sgRNA_NC1 [NC1_SS4_2-280087759]

description: NO capture sequencing data


title: sgRNA_NC2 [NC2_SS5_1-280126851]

description: NO capture sequencing data


title: sgRNA_NC1 [NC1_SS5_2-280081749]

description: NO capture sequencing data


title: 3M-052_pDCs_D28 5


title: 3M-052_Ly6c_D28 5


title: sgRNA_NC1 [NC1_SS3_2-280120921]

description: NO capture sequencing data


title: 3M-052_Ly6c_D28 2


title: 3M-052_Ly6c_D28 1


title: sgRNA_NC1 [NC1_SS2bis_2-280084766]

description: NO capture sequencing data


title: sgRNA_NC1 [NC1_SS3_1-280088776]

description: NO capture sequencing data


title: YF_Ly6c_D28 4


title: 3M-052_Ly6c_D28 3


title: sgRNA_NC1 [NC1_SS1bis_2-280087755]

description: NO capture sequencing data


title: YF_DP_D28 4

value: DP


title: sgRNA_NC1 [NC1_SS2bis_1-280079726]

description: NO capture sequencing data


title: sgRNA_NC1 [NC1_SS4_1-280121936]

description: NO capture sequencing data


title: YF_DP_D28 3


title: YF_DP_D28 5


title: YF_DP_D28 2


title: sgRNA_Mock [Mock_SS6_1-280122904]

description: NO capture sequencing data


title: YF_DP_D28 1


title: sgRNA_Mock [Mock_SS5_2-280088773]

description: NO capture sequencing data


title: sgRNA_Mock [Mock_SS6_2-280088774]

description: NO capture sequencing data


title: 3M-052_DP_D28 4


title: 3M-052_DP_D28 3


title: 3M-052_DP_D28 2


title: sgRNA_Mock [Mock_SS4_2-280090774]

description: NO capture sequencing data


title: 3M-052_Ly6c_D28 4


title: 3M-052_DP_D28 1


title: sgRNA_Mock [Mock_SS3_2-280086718]

description: NO capture sequencing data


title: sgRNA_Mock [Mock_SS4_1-280083800]

description: NO capture sequencing data


title: sgRNA_Mock [Mock_SS3_1-280124881]

description: NO capture sequencing data


title: YF_DCs_D28 5

value: DCs


title: YF_DCs_D28 4


title: sgRNA_Mock [Mock_SS2bis_1-280093551]

description: NO capture sequencing data

value: sgRNA transfected


title: 3M-052_DP_D28 5


title: sgRNA_NC1 [NC1_SS1bis_1-280087754]

description: NO capture sequencing data


title: YF_DCs_D28 1


title: sgRNA_Mock [Mock_SS1bis_1-280091758]

description: NO capture sequencing data


title: 3M-052_DCs_D28 3


title: 3M-052_DCs_D28 5


title: YF_DCs_D28 3


title: sgRNA_Mock [Mock_SS5_1-280086719]

description: NO capture sequencing data


title: sgRNA_MALAT1_8 [MALAT1_8_SS6-280089798]

description: NO capture sequencing data


title: YF_DCs_D28 2


title: sgRNA_MALAT1_9 [MALAT1_9_SS6-280123908]

description: NO capture sequencing data


title: sgRNA_Mock [Mock_SS2bis_2-280124880]

description: NO capture sequencing data


title: 3M-052_DCs_D28 1


title: sgRNA_Mock [Mock_SS1bis_2-280090772]

description: NO capture sequencing data


title: sgRNA_MALAT1_4 [MALAT1_4_SS6-280081744]

description: NO capture sequencing data


title: YF_pDCS_D1 5

value: pDCS


title: sgRNA_MALAT1_3 [MALAT1_3_SS6-280079725]

description: NO capture sequencing data


title: YF_pDCS_D1 4


title: sgRNA_MALAT1_6 [MALAT1_6_SS6-280088771]

description: NO capture sequencing data


title: sgRNA_MALAT1_10 [MALAT1_10_SS6-280122900]

description: NO capture sequencing data


title: sgRNA_MALAT1_7 [MALAT1_7_SS6-280120916]

description: NO capture sequencing data


title: 3M-052_DCs_D28 2


title: YF_pDCS_D1 3


title: sgRNA_MALAT1_5 [MALAT1_5_SS6-280087751]

description: NO capture sequencing data


title: YF_pDCS_D1 2


title: sgRNA_MALAT1_2 [MALAT1_2_SS6-280124878]

description: NO capture sequencing data


title: 3M-052_pDCS_D1 5


title: 3M-052_pDCS_D1 4


title: sgRNA_LINC00909_8 [LINC00909_8_SS2-280081743]

description: NO capture sequencing data


title: sgRNA_LINC00909_5 [LINC00909_5_SS2-280120915]

description: NO capture sequencing data


title: 3M-052_pDCS_D1 3


title: YF_pDCS_D1 1


title: sgRNA_MALAT1_1 [MALAT1_1_SS6-280087750]

description: NO capture sequencing data


title: sgRNA_LINC00909_6 [LINC00909_6_SS2-280092680]

description: NO capture sequencing data


title: sgRNA_LINC00909_4 [LINC00909_4_SS2-280087749]

description: NO capture sequencing data


title: sgRNA_LINC00909_3 [LINC00909_3_SS2-280091753]

description: NO capture sequencing data


title: sgRNA_LINC00909_9 [LINC00909_9_SS2-280092682]

description: NO capture sequencing data


title: sgRNA_LINC00909_2 [LINC00909_2_SS2bis-280081739]

description: NO capture sequencing data


title: 3M-052_pDCS_D1 2


title: YF_Ly6c_D1 2


title: YF_Ly6c_D1 4


title: sgRNA_LINC00909_10 [LINC00909_10_SS2-280079723]

description: NO capture sequencing data


title: sgRNA_LINC00909_1 [LINC00909_1_SS2bis-280081738]

description: NO capture sequencing data


title: YF_Ly6c_D1 1


title: 3M-052_Ly6c_D1 5


title: sgRNA_linc00630_8 [linc00630_8_SS5-280091802]

description: NO capture sequencing data


title: 3M-052_Ly6c_D1 4


title: sgRNA_linc00630_7 [linc00630_7_SS5-280122944]

description: NO capture sequencing data


title: sgRNA_linc00630_9 [linc00630_9_SS5-280122946]

description: NO capture sequencing data


title: 3M-052_Ly6c_D1 3


title: sgRNA_LINC00909_7 [LINC00909_7_SS2-280090767]

description: NO capture sequencing data


title: 3M-052_pDCS_D1 1


title: sgRNA_linc00630_6 [linc00630_6_SS5-280125897]

description: NO capture sequencing data


title: YF_Ly6c_D1 5


title: YF_DP_D1 4


title: 3M-052_Ly6c_D1 1


title: YF_Ly6c_D1 3


title: sgRNA_linc00630_4 [linc00630_4_SS5-280086770]

description: NO capture sequencing data


title: 3M-052_Ly6c_D1 2


title: YF_DP_D1 3


title: sgRNA_linc00630_3 [linc00630_3_SS5-280129852]

description: NO capture sequencing data


title: sgRNA_linc00630_10 [linc00630_10_SS5-280121978]

description: NO capture sequencing data


title: sgRNA_linc00630_5 [linc00630_5_SS5-280124918]

description: NO capture sequencing data


title: sgRNA_JUN_9 [JUN_9_SS5-280125848]

description: NO capture sequencing data


title: sgRNA_linc00630_1 [linc00630_1_SS5-280124916]

description: NO capture sequencing data


title: sgRNA_linc00630_2 [linc00630_2_SS5-280125895]

description: NO capture sequencing data


title: 3M-052_DP_D1 5


title: YF_DP_D1 1


title: sgRNA_JUN_8 [JUN_8_SS5-280123905]

description: NO capture sequencing data


title: 3M-052_DP_D1 3


title: sgRNA_JUN_7 [JUN_7_SS5-280084759]

description: NO capture sequencing data


title: 3M-052_DP_D1 4


title: 3M-052_DP_D1 2


title: sgRNA_JUN_6 [JUN_6_SS5-280123904]

description: NO capture sequencing data


title: YF_DP_D1 5


title: sgRNA_JUN_5 [JUN_5_SS5-280090763]

description: NO capture sequencing data


title: 3M-052_DP_D1 1


title: YF_DCs_D1 5


title: sgRNA_JUN_3 [JUN_3_SS5-280088764]

description: NO capture sequencing data


title: YF_DCs_D1 4


title: YF_DP_D1 2


title: YF_DCs_D1 2


title: sgRNA_JUN_2 [JUN_2_SS5-280087746]

description: NO capture sequencing data


title: YF_DCs_D1 3


title: sgRNA_JUN_1 [JUN_1_SS5-280086716]

description: NO capture sequencing data


title: sgRNA_JUN_10 [JUN_10_SS5-280088762]

description: NO capture sequencing data


title: 3M-052_DCs_D1 4


title: 3M-052_DCs_D1 5


title: 3M-052_DCs_D1 3


title: YF_DCs_D1 1


title: 3M-052_DCs_D1 2


title: sgRNA_FAM215B_8 [FAM215B_8_SS2bis-280092675]

description: NO capture sequencing data


title: sgRNA_FAM215B_7 [FAM215B_7_SS2bis-280121928]

description: NO capture sequencing data


title: sgRNA_FAM215B_6 [FAM215B_6_SS2bis-280089793]

description: NO capture sequencing data


title: YF_pDCs_D0 5


title: sgRNA_FAM215B_4 [FAM215B_4_SS2-280079720]

description: NO capture sequencing data


title: 3M-052_DCs_D1 1


title: sgRNA_JUN_4 [JUN_4_SS5-280088765]

description: NO capture sequencing data


title: sgRNA_FAM215B_3 [FAM215B_3_SS2-280086715]

description: NO capture sequencing data


title: YF_pDCs_D0 4


title: YF_pDCs_D0 3


title: YF_pDCs_D0 2


title: sgRNA_FAM215B_2 [FAM215B_2_SS2bis-280091751]

description: NO capture sequencing data


title: sgRNA_FAM215B_10 [FAM215B_10_SS2bis-280124873]

description: NO capture sequencing data


title: sgRNA_FAM215B_9 [FAM215B_9_SS2bis-280123903]

description: NO capture sequencing data


title: YF_pDCs_D0 1


title: 3M-052_pDCs_D0 5


title: sgRNA_DPH1 [DPH1_SS6_2-280093546]

description: NO capture sequencing data


title: sgRNA_FAM215B_1 [FAM215B_1_SS2bis-280091750]

description: NO capture sequencing data


title: sgRNA_DPH1 [DPH1_SS6_1-280090761]

description: NO capture sequencing data


title: 3M-052_pDCs_D0 3


title: 3M-052_pDCs_D0 4


title: sgRNA_DPH1 [DPH1_SS5_2-280084754]

description: NO capture sequencing data


title: sgRNA_DPH1 [DPH1_SS4_2-280086714]

description: NO capture sequencing data


title: 3M-052_pDCs_D0 2


title: sgRNA_DPH1 [DPH1_SS4_1-280084753]

description: NO capture sequencing data


title: 3M-052_pDCs_D0 1


title: sgRNA_FAM215B_5 [FAM215B_5_SS2bis-280083793]

description: NO capture sequencing data


title: sgRNA_DPH1 [DPH1_SS5_1-280079717]

description: NO capture sequencing data


title: YF_Ly6c_D0 5


title: sgRNA_DPH1 [DPH1_SS3_2-280081734]

description: NO capture sequencing data


title: YF_Ly6c_D0 3


title: YF_Ly6c_D0 1


title: YF_Ly6c_D0 2


title: sgRNA_DPH1 [DPH1_SS3_1-280093544]

description: NO capture sequencing data


title: sgRNA_DPH1 [DPH1_SS2bis_1-280120911]

description: NO capture sequencing data


title: sgRNA_DPH1 [DPH1_SS2bis_2-280086713]

description: NO capture sequencing data


title: sgRNA_DPH1 [DPH1_SS1bis_2-280088757]

description: NO capture sequencing data


title: 3M-052_Ly6c_D0 5


title: sgRNA_DPH1 [DPH1_SS1bis_1-280083792]

description: NO capture sequencing data


title: sgRNA_DNAJC3_9 [DNAJC3_9_SS5-280089790]

description: NO capture sequencing data


title: 3M-052_Ly6c_D0 3


title: sgRNA_DNAJC3_8 [DNAJC3_8_SS5-280087744]

description: NO capture sequencing data


title: 3M-052_Ly6c_D0 4


title: 3M-052_Ly6c_D0 2


title: YF_Ly6c_D0 4


title: 3M-052_Ly6c_D0 1


title: sgRNA_DNAJC3_6 [DNAJC3_6_SS5-280092670]

description: NO capture sequencing data


title: YF_DP_D0 3


title: YF_DP_D0 2


title: YF_DP_D0 5


title: sgRNA_DNAJC3_4 [DNAJC3_4_SS5-280084751]

description: NO capture sequencing data


title: sgRNA_DNAJC3_3 [DNAJC3_3_SS5-280081729]

description: NO capture sequencing data


title: sgRNA_DNAJC3_10 [DNAJC3_10_SS5-280079716]

description: NO capture sequencing data


title: YF_DP_D0 1


title: 3M-052_DP_D0 5


title: sgRNA_DNAJC3_7 [DNAJC3_7_SS5-280081731]

description: NO capture sequencing data


title: sgRNA_DNAJC3_2 [DNAJC3_2_SS5-280087743]

description: NO capture sequencing data


title: 3M-052_DP_D0 3


title: 3M-052_DP_D0 4


title: sgRNA_CTC_9 [CTC_9_SS2-280093542]

description: NO capture sequencing data


title: sgRNA_CTC_8 [CTC_8_SS2-280084750]

description: NO capture sequencing data


title: 3M-052_DP_D0 1


title: YF_DCS_D0 5

value: DCS


title: sgRNA_CTC_6 [CTC_6_SS2-280088753]

description: NO capture sequencing data


title: YF_DP_D0 4


title: sgRNA_CTC_5 [CTC_5_SS2-280086709]

description: NO capture sequencing data


title: YF_DCS_D0 3


title: YF_DCS_D0 4


title: sgRNA_CTC_3 [CTC_3_SS2-280122892]

description: NO capture sequencing data


title: YF_DCS_D0 2


title: sgRNA_CTC_10 [CTC_10_SS2-280075792]

description: NO capture sequencing data


title: sgRNA_CTC_1 [CTC_1_SS2bis-280084749]

description: NO capture sequencing data


title: sgRNA_CTC_2 [CTC_2_SS2bis-280088750]

description: NO capture sequencing data


title: sgRNA_DNAJC3_1 [DNAJC3_1_SS5-280090760]

description: NO capture sequencing data


title: 3M-052_DCS_D0 2


title: 3M-052_DCS_D0 5


title: 3M-052_DCS_D0 4


title: sgRNA_ANTIPRO3_SS5_2 [ANTIPRO3_SS5_2-280092666]

description: NO capture sequencing data


title: 3M-052_DCS_D0 3


title: sgRNA_ANTIPRO3_SS6_2 [ANTIPRO3_SS6_2-280088749]

description: NO capture sequencing data


title: 3M-052_DP_D0 2


title: sgRNA_ANTIPRO3_SS5_1 [ANTIPRO3_SS5_1-280121921]

description: NO capture sequencing data


title: 3M-052_DCS_D0 1


title: foxc1a-h-96hpf-WT

city: Nanjing

first: Luqingqing

last: He

address: 12 Xuefu Road, Pukou High-tech Development Zone

country: China

institute: Model Animal Research Center

data_processing:
Illumina Casava1.7 software used for basecalling.
bcl2fastq convert  BCL files to fastq files.
HISAT2 software was used for data alignment.
Sequenced reads were trimmed by Trimmomatic.
FeatureCounts was used as an efficient general purpose program for assigning sequence reads to genomic features.
EB-Seq arithmetic was used for the screening of differential expression genes.
Genome_build: GRCz11
Supplementary_files_format_and_content: EBSeq_results_all.xlsx, FPKM.xlsx, counts.xlsx

organism: Danio rerio

source_name: heart

extract_protocol:
Hearts were removed,flash frozen using liquid nitrogen. RNA was extracted using RaPure Total RNA Micro Kit(Magen,China) with at least 300ng total RNA for the construction of sequencing libraries.
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: genotype

value: TU

value: heart

value: 96 hpf


title: sgRNA_ANTIPRO3_SS4_2 [ANTIPRO3_SS4_2-280121920]

description: NO capture sequencing data


title: foxc1a-h-96hpf-MuT


title: sgRNA_CTC_4 [CTC_4_SS2-280089788]

description: NO capture sequencing data


title: sgRNA_DNAJC3_5 [DNAJC3_5_SS5-280120910]

description: NO capture sequencing data


title: YF_DCS_D0 1

tag: strain


title: sgRNA_CTC_7 [CTC_7_SS2-280090759]

description: NO capture sequencing data


title: sgRNA_ANTIPRO3_SS6_1 [ANTIPRO3_SS6_1-280084748]

description: NO capture sequencing data


title: Human GBM Tumor sample 1 [F3pos_CD44pos_VII]

description:
SMARTerAmpSeq
humanGBM_bulkRNA_F3sort.csv

source_name: patient derived xenograft glioblastoma cells


title: Human GBM Tumor sample 1 [F3pos_CD44pos_V]


title: sgRNA_ANTIPRO3_SS3_2 [ANTIPRO3_SS3_2-280086706]

description: NO capture sequencing data


title: sgRNA_ANTIPRO3_SS3_1 [ANTIPRO3_SS3_1-280087741]

description: NO capture sequencing data


title: sgRNA_ANTIPRO3_SS2_1 [ANTIPRO3_SS2bis_1-280093538]

description: NO capture sequencing data


title: sgRNA_ANTIPRO3_SS2_2 [ANTIPRO3_SS2bis_2-280084746]

description: NO capture sequencing data


title: sgRNA_ANTIPRO2_SS6_1 [ANTIPRO2_SS6_1-280092664]

description: NO capture sequencing data


title: sgRNA_ANTIPRO3_SS1_1 [ANTIPRO3_SS1bis_1-280090757]

description: NO capture sequencing data


title: sgRNA_ANTIPRO2_SS5_2 [ANTIPRO2_SS5_2-280084744]

description: NO capture sequencing data


title: Human GBM Tumor sample 1 [F3pos_CD44pos_IV]


title: Human GBM Tumor sample 1 [F3pos_VI_IGO_05884_I]


title: Human GBM Tumor sample 1 [F3negCD44neg_V]


title: Human GBM Tumor sample 1 [F3negCD44neg_VII]


title: sgRNA_ANTIPRO2_SS4_2 [ANTIPRO2_SS4_2-280084743]

description: NO capture sequencing data


title: Human GBM Tumor sample 1 [F3negCD44neg_IV]


title: Human GBM Tumor sample 1 [F3neg_VI]


title: sgRNA_ANTIPRO2_SS3_2 [ANTIPRO2_SS3_2-280081723]

description: NO capture sequencing data


title: sgRNA_ANTIPRO2_SS3_1 [ANTIPRO2_SS3_1-280089787]

description: NO capture sequencing data


title: Human GBM Tumor sample 1 [F3pos_CD44neg_IV]


title: blHAP1_c21_E

city: Tallahassee

first: David

middle: M

last: Gilbert

state: FL

address: 319 Stadium Drive

department: Department of Biological Science

institute: Florida State University

library_source: genomic

data_processing:
Library strategy: Repli-seq
Repli-Seq experiments that are marked E and L were analysed according to (Marchal et al., 2018 PMID: 29599440).
Genome_build: hg38
Supplementary_files_format_and_content: bedgraph

molecule: genomic DNA

growth_protocol: HAP1 cells were grown in IMDM plus 10% FBS and 1% Pen/Strep and passaged by trypsinization according to manufacturer's instructions.

extract_protocol:
gDNA was isolated with SDS-PK buffer containing 0.2 mg/ml proteinase K for 2 hours at 56C followed by purification with 800 µl of Genomic Lysis Buffer from the Zymo Quick-DNA Microprep Kit according to manufacturers instructions
DNA from was made into repli-seq library described in (PMID: 29599440)

treatment_protocol: When the cell reached approximately 70% confluent, asynchronously growing cells were pulse-labeled with 100uM BrdU for 2 hours, harvested and ethanol fixed, then retroactively synchronized by FACS sorting according to the DNA content.

value: human haploid CML cell line

value: boundary element insertion with Sleeping Beauty transposon


title: sgRNA_ANTIPRO2_SS5_1 [ANTIPRO2_SS5_1-280121916]

description: NO capture sequencing data


title: sgRNA_ANTIPRO2_SS2_2 [ANTIPRO2_SS2_2-280079713]

description: NO capture sequencing data


title: sgRNA_ANTIPRO2_SS1_2 [ANTIPRO2_SS1bis_2-280083787]

description: NO capture sequencing data


title: sgRNA_ANTIPRO2_SS1_1 [ANTIPRO2_SS1bis_1-280124866]

description: NO capture sequencing data


title: sgRNA_ANTIPRO1_SS6_2 [ANTIPRO1_SS6_2-280121912]

description: NO capture sequencing data


title: blHAP1_wt_L


title: sgRNA_ANTIPRO2_SS2_1 [ANTIPRO2_SS2_1-280121913]

description: NO capture sequencing data


title: sgRNA_ANTIPRO2_SS6_2 [ANTIPRO2_SS6_2-280092665]

description: NO capture sequencing data


title: R122C_tissue_2

city: Singapore

first: Daisuke

last: Douchi

address: 14 Medical Drive

department: Centre for Translational Medicine

country: Singapore

institute: Cancer Science Institute of Singapore

data_processing:
Sequenced reads were aligned with the STAR software to mm10, and mapped counts were employed to generate the raw expression counts using the FeatureCounts with GENCODE transcriptome annotation.
The raw expression counts were then further normalized using the Cross-Correlation method (Nucleic Acids Res 2006;34:e38).
Genome_build: mm10
Supplementary_files_format_and_content: FPKM

source_name: Stomach

extract_protocol:
RNA was extracted from mouse stomach corpus using the RNeasy Mini Kit (QIAGEN) with on-column genomic DNA digestion using the RNase-free DNase Set (QIAGEN).
RNA were sent to Beijing Genomics Institute (BGI) for transcriptome library preparation and sequencing.

value: Stomach (corpus)

value: RUNX3 R122C

tag: age

value: 6 months

tag: numbers

value: 1 mouse


title: R122C_tissue_3


title: blHAP1_wt_E

tag: cell line

tag: cell type


title: WT_tissue_3

value: WT


title: R122C_tissue_1


title: sgRNA_ANTIPRO1_SS5_2 [ANTIPRO1_SS5_2-280090755]

description: NO capture sequencing data

tag: treatment


title: sgRNA_ANTIPRO1_SS6_1 [ANTIPRO1_SS6_1-280124865]

description: NO capture sequencing data

tag: modification


title: WT_tissue_2


title: blHAP1_c21_L


title: sgRNA_ANTIPRO1_SS5_1 [ANTIPRO1_SS5_1-280120904]

description: NO capture sequencing data


title: sgRNA_ANTIPRO1_SS4_2 [ANTIPRO1_SS4_2-280083786]

description: NO capture sequencing data


title: Empty adenovirus infection Sup

city: Harbin

first: weijie

last: du

state: Heilongjiang

address: 157 Baojian Road

institute: Harbin Medical University

description:
V_Sup
Biological replicate 1 of 1. Empty adenovirus infected primary neonatal rat cardiomyocytes. Primary culture for 48 hours.

hyb_protocol: Cy3 and Cy5 labeled cRNAs were combined together and hybridized to Arraystar Human mRNA&lncRNA Epitranscriptomic Arrays (8x60K, Arraystar) at 65°C for 17 hours in an Agilent Hybridization Oven.

scan_protocol: After washing, slides were scanned with Agilent Scanner G2505C.

data_processing: Agilent Feature Extraction software (version 11.0.1.1) was used to analyze acquired array images. Raw intensities of IP (immunoprecipitated, Cy5-labelled) and Sup (supernatant, Cy3-labelled) were normalized with average of log2-scaled Spike-in RNA intensities. After Spike-in normalization, the probe signals having Present (P) or Marginal (M) QC flags in at least 4 out of 8 samples were retained as “All Targets Value” in the Excel sheet for further “m6A methylation level” and “m6A quantity” and “expression level” analyses. “m6A methylation level” was calculated for the percentage of modification based on the IP (Cy5-labelled) and Sup (Cy3-labelled) normalized intensities. “m6A quantity” was calculated for the m6A methylation amount based on the IP (Cy5-labelled) normalized intensities. “expression level” was calculated based on the total of IP (Cy5-labelled) and Sup (Cy3-labelled) normalized intensities.

label_protocol: The “IP” and “Sup” RNAs were labeled with Cy5 and Cy3 respectively as cRNAs in separate reactions using Arraystar Super RNA Labeling Kit.

growth_protocol: The heart of Kunming offspring within 3 days of age was taken out, digested with trypsin, and cultured with DMEM high-sugar medium and 10% fetal bovine serum for 48 hours to allow cardiomyocytes to grow adherently.

extract_protocol:
Total RNA extracted using Trizol following manufacturer's instructions.
The total RNAs were immunoprecipitated with anti-N6-methyadenosine (m6A) antibody. The modified RNAs were eluted from the immunoprecipitated magnetic beads as the “IP”. The unmodified RNAs were recovered from the supernatant as “Sup”.

treatment_protocol: Adenovirus infects cardiomyocytes for 48 hours.

value: Primary neonatal rat cardiomyocytes

value: Infection with empty adenovirus

tag: time point

value: 48 hours

tag: antibody

value: anti-N6-methyadenosine (m6A) antibody

tag: ip fraction

value: Sup


title: Mettl14-overexpression adenovirus infection Sup

description:
ADV_Sup
Biological replicate 1 of 1. Mettl14-overexpression adenovirus infected primary neonatal rat cardiomyocytes. Primary culture for 48 hours.

value: Infection with adenovirus carrying Mettl14 gene


title: WT_tissue_1


title: Empty adenovirus infection IP

description:
V_IP
Biological replicate 1 of 1. Empty adenovirus infected primary neonatal rat cardiomyocytes. Primary culture for 48 hours.

value: IP


title: Mettl14-overexpression adenovirus infection IP

description:
ADV_IP
Biological replicate 1 of 1. Mettl14-overexpression adenovirus infected primary neonatal rat cardiomyocytes. Primary culture for 48 hours.


title: sgRNA_ANTIPRO1_SS4_1 [ANTIPRO1_SS4_1-280081721]

description: NO capture sequencing data

value: sgRNA transfected


title: sgRNA_ANTIPRO1_SS3_2 [ANTIPRO1_SS3_2-280075784]

description: NO capture sequencing data


title: sgRNA_ANTIPRO1_SS3_1 [ANTIPRO1_SS3_1-280089786]

description: NO capture sequencing data


title: pC4_CLSY4-3xF_ins2_smRNA-seq

city: La Jolla

first: Julie

middle: Ann

last: Law

address: 10010 North Torrey Pines Rd

department: PLANT MOLECULAR AND CELLULAR BIOLOGY LABORATORY

institute: The Salk Institute for Biological Studies

data_processing:
Illumina Casava software used for basecalling and demultiplexing.
Read Filtering, Mapping, and cluster calling: The adapters were removed from the de-multiplexed reads using cutadapt (v1.9.1) and trimmed reads longer that 15nt were mapped to the TAIR10 genome using ShortStack (v3.8.1) with the following options: --mismatches 1 and either --mmap f, to include multi-mapping reads, or --mmap n, to include only unique mapping reads. Only perfectly matched read or reads with a single 3’ mismatch were used to call smRNA clusters using ShortStack with the --mincov 20, --pad 100, --dicermin 21 and dicermax 24 options, to generate Tag Directories using the using the makeTagDirectory script from the HOMER with the -format sam -mis 1 and -keepAll options, and to make genome browser tracks specifically for the 24nt sized smRNAs using the makeUCSCfile script from HOMER with the -fragLength 24 and -norm 10000000 options.
TAIR10
Supplementary_files_format_and_content: bedGraph file, including header and chr#, start position, end position and normalized value (rp10M).

organism: Arabidopsis thaliana

source_name: stage 12 and younger flower buds (Fl)

growth_protocol: Growth conditions and tissue collection for 15 day old aerial rosettes (Ar) and 25 day old leaves (Lv) for all genotypes were as follows: seeds were sterilized with bleach and plated on half strength Linsmaier and Skoog medium (1/2 LS) supplemented with 1% agar. After three days stratification in the dark at 4℃, plants were grown in the Percival growth chamber (GCU-36L5) under 16h-light and 8h-dark cycle at 22℃ for 7 days and then were transplanted onto soil in Salk’s green house with long day conditions. At day 15 and day 25 of total growth, aerial rosette tissue (whole seedling without roots) or the first and second true leaves (without petioles) were collected from~40 plants as the Ar and Lv samples, respectively, immediately frozen in liquid nitrogen, and kept at -80°C until use. Growth conditions and tissue collection for mature, unfertilized ovules (Ov) were as follows: seeds were grown from soil in Salk’s greenhouse with long day conditions and un-opened flower buds (stage 10-12) were dissected to obtain carpels using a tweezer and then fixed on a double-side tape on a glass slide. Subsequently, carpels were dissected under dissection microscope using a needle and ovules were collected with the vacuum-based micro-aspiration device as detailed below. After collection, ovules for RNA extraction were quickly mixed with 100 µL trizol (Invitrogen, Cat# 15596018), flash frozen in liquid nitrogen and preserved at -80℃ until use, while ovules for DNA preparation were preserved in the same way without trizol. For each genotype, > 300 carpels were dissected and over 10,000 ovules were collected.

extract_protocol:
Total RNAs were isolated using Trizol reagent (Life Tech, Cat# 15596018) following the manual and dissolved in 250μL RNase-free water. 2.0 µg of total RNA from Ar and Lv tissues, or ~0.5ug of total RNA from Ov, were used for smRNA enrichment through a polyethylene glycol (PEG) precipitation step. One volume of a 20% PEG 8000/2M NaCl solution was added to each RNA sample, mixed well and kept on ice for more than 30 minutes (min) and then centrifuged at 13,000rpm for 15min at 4°C. The supernatant, containing the small RNAs, was collected and precipitated with 1 volume of cold isopropanol, mixed and incubated on ice for 30min. Then the small RNA samples were recovered by centrifuged at 13,000rpm for 30min at 4°C. The resulting small RNA samples were run on 15% polyacrylamide-8M urea gels and performed size-selection of fragments from 17-29 nucleotide (nt) following the ZR-small RNA ladder (zymo research, Cat# R1090). The small RNAs in the gels were recovered by incubating with 0.3M NaCl overnight, filtering the gels and add 2.5 volumes of 100% ethanol and 3μL of glycogen for precipitation over 2 hours (h) at -80°C.
The small RNAs were used for library preparation with the NEBnext Multiplex Small RNA Library Prep Set for Illumina (New England Biolabs, Cat# E7300) following the user’s manual. The final library products were further purified using an 8% polyacrylamide gel to excise 130-160nt products relative to the pBR322 DNA-MspI Digest ladder (New England Biolabs, Cat# E7323AA). The purified libraries were pooled and sequenced (single end 50 bp, SE50) on a HiSeq 2500 machine (Illumina).

tag: ecotype

value: Columbia

tag: tissues

value: stage 12 and younger flower buds (Fl)

value: pC4::CLSY4-3xF clsy4-1


title: sgRNA_ANTIPRO1_SS2_2 [ANTIPRO1_SS2_2-280123894]

description: NO capture sequencing data


title: sgRNA_ANTIPRO1_SS1_1 [ANTIPRO1_SS1bis_1-280086703]

description: NO capture sequencing data


title: pC4_CLSY4-3xF_ins1_smRNA-seq


title: sgRNA_ANTIPRO1_SS1_2 [ANTIPRO1_SS1bis_2-280124864]

description: NO capture sequencing data


title: sgRNA_ANTIPRO1_SS2_1 [ANTIPRO1_SS2_1-280120901]

description: NO capture sequencing data


title: sgRNA_AC083843_9 [AC083843_9_SS4-280122887]

description: NO capture sequencing data


title: nrpd1-4_pol-iv_rep2_smRNA-seq


title: pC3_CLSY3-3xF_ins3_smRNA-seq

value: pC3::CLSY3-3xF clsy3-1


title: sgRNA_AC083843_8 [AC083843_8_SS4-280120898]

description: NO capture sequencing data


title: sgRNA_AC083843_7 [AC083843_7_SS4-280092660]

description: NO capture sequencing data


title: pC3_3xF-CLSY3_ins1_smRNA-seq

value: pC3::3xF-CLSY3 clsy3-1