title: L07_CB08_146_gasoline_10

description:
L07_CB08
MCF-7_normcounts.csv


title: L07_CC06_MethodBlank_0

status: Public on Jan 01 2022

type: SRA

city: RTP

first: John

middle: S.

last: House

state: NC

address: 111 TW Alexander Drive

department: Biostatistics & Computational Biology Branch

country: USA

institute: National Instititute of Environmental Health Sciences

description:
L07_CC06
MCF-7_normcounts.csv

library_source: transcriptomic

data_processing:
pipeline run to convert reads to counts https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5672545/
samples with counts < 100 average reads per transcript removed
normalized counts generated by cell type in DESEQ2
Genome_build: NA – Targeted Reads by BioSpyder
Supplementary_files_format_and_content: 6 normalized count matrix files in CSV with genes as rows and columns as samples.  The sample information in the hashfile.csv

molecule: total RNA

organism: Homo sapiens

extract_protocol:
described in https://www.altex.org/index.php/altex/article/view/1994
described in https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0178302

tag: tissue/celltype

value: MCF7 Cells

tag: treatment

tag: dose


title: L07_CB05_061_P_Hwax_10

description:
L07_CB05
MCF-7_normcounts.csv

value: WAX


title: L07_CB07_168_SRGO_10

description:
L07_CB07
MCF-7_normcounts.csv

value: SRGO


title: L07_CB02_011_kerosine_10

description:
L07_CB02
MCF-7_normcounts.csv

value: KER


title: L07_CA05_138_OLBO_10

description:
L07_CA05
MCF-7_normcounts.csv

value: BO


title: L07_CA07_018_HFO_10

description:
L07_CA07
MCF-7_normcounts.csv

value: HFO


title: L07_CA10_085D_OLBO_10

description:
L07_CA10
MCF-7_normcounts.csv


title: L07_CA08_025_HFO_10

description:
L07_CA08
MCF-7_normcounts.csv


title: L07_BG10_123_kerosine_10

description:
L07_BG10
MCF-7_normcounts.csv


title: L07_BH06_MethodBlank_0

description:
L07_BH06
MCF-7_normcounts.csv


title: L07_CB03_147_OLBO_10

description:
L07_CB03
MCF-7_normcounts.csv


title: L07_CA02_160_FO_10

description:
L07_CA02
MCF-7_normcounts.csv

value: FO


title: L07_BG08_102_CGO_10

description:
L07_BG08
MCF-7_normcounts.csv

value: CGO


title: L07_CA11_028_HFO_10

description:
L07_CA11
MCF-7_normcounts.csv


title: L07_CB04_117_OLBO_10

description:
L07_CB04
MCF-7_normcounts.csv


title: L07_BG09_170_SRGO_10

description:
L07_BG09
MCF-7_normcounts.csv


title: L07_CA01_046_gasoline_10

description:
L07_CA01
MCF-7_normcounts.csv

value: NAPTHA


title: L07_CA04_086_kerosine_10

description:
L07_CA04
MCF-7_normcounts.csv


title: L07_BG04_106_CGO_10

description:
L07_BG04
MCF-7_normcounts.csv


title: L07_BG11_058_HFO_10

description:
L07_BG11
MCF-7_normcounts.csv


title: L07_BG03_153_OLBO_10

description:
L07_BG03
MCF-7_normcounts.csv


title: L07_BG01_121_CGO_10

description:
L07_BG01
MCF-7_normcounts.csv


title: L07_BF10_070_CGO_10

description:
L07_BF10
MCF-7_normcounts.csv


title: L07_BG06_MethodBlank_0

description:
L07_BG06
MCF-7_normcounts.csv


title: L07_BF09_096B_UDAE_10

description:
L07_BF09
MCF-7_normcounts.csv

value: UDAE


title: L07_CB01_152_slackwax_10

description:
L07_CB01
MCF-7_normcounts.csv


title: L07_BF06_MethodBlank_0

description:
L07_BF06
MCF-7_normcounts.csv


title: L07_BF07_114_OLBO_10

description:
L07_BF07
MCF-7_normcounts.csv


title: L07_CA03_062_P_Hwax_10

description:
L07_CA03
MCF-7_normcounts.csv


title: L07_BF05_196_petrolatum_10

description:
L07_BF05
MCF-7_normcounts.csv


title: L07_BF08_148_OLBO_10

description:
L07_BF08
MCF-7_normcounts.csv


title: L07_BF03_178_VHGO_10

description:
L07_BF03
MCF-7_normcounts.csv

value: VHGO


title: L07_BF04_197_HFO_10

description:
L07_BF04
MCF-7_normcounts.csv


title: L07_BF02_132_gasoline_10

description:
L07_BF02
MCF-7_normcounts.csv


title: L07_BE09_175_VHGO_100

description:
L07_BE09
MCF-7_normcounts.csv


title: L07_BE10_188_SRGO_1

description:
L07_BE10
MCF-7_normcounts.csv


title: L07_BE05_134_HFO_1

description:
L07_BE05
MCF-7_normcounts.csv


title: L07_BE08_175_VHGO_1

description:
L07_BE08
MCF-7_normcounts.csv


title: L07_BE03_120_gasoline_1

description:
L07_BE03
MCF-7_normcounts.csv


title: L07_BE11_188_SRGO_100

description:
L07_BE11
MCF-7_normcounts.csv


title: L07_BE02_092_OLBO_100

description:
L07_BE02
MCF-7_normcounts.csv


title: L08_AF01_043_kerosine_10

description:
L08_AF01
MCF-7_normcounts.csv


title: L07_BG02_202_Paraffinwax_10

description:
L07_BG02
MCF-7_normcounts.csv


title: L07_BE04_120_gasoline_100

description:
L07_BE04
MCF-7_normcounts.csv


title: L07_BE07_134_HFO_100

description:
L07_BE07
MCF-7_normcounts.csv


title: L07_BD06_MethodBlank_0

description:
L07_BD06
MCF-7_normcounts.csv


title: L07_BD04_177_VHGO_10

description:
L07_BD04
MCF-7_normcounts.csv


title: L07_BE01_092_OLBO_1

description:
L07_BE01
MCF-7_normcounts.csv


title: L07_BD02_091_HFO_10

description:
L07_BD02
MCF-7_normcounts.csv


title: L07_BD01_184_VHGO_10

description:
L07_BD01
MCF-7_normcounts.csv


title: L07_BD03_020_HFO_10

description:
L07_BD03
MCF-7_normcounts.csv


title: L07_BC11_193_OXASPH_10

description:
L07_BC11
MCF-7_normcounts.csv

value: BIT


title: L07_BC10_182_VHGO_10

description:
L07_BC10
MCF-7_normcounts.csv


title: L07_BC09_120_gasoline_10

description:
L07_BC09
MCF-7_normcounts.csv


title: L07_BC05_140_OLBO_10

description:
L07_BC05
MCF-7_normcounts.csv


title: L07_BC08_130_CGO_10

description:
L07_BC08
MCF-7_normcounts.csv


title: L07_BF01_075_OLBO_10

description:
L07_BF01
MCF-7_normcounts.csv


title: L07_BC06_MethodBlank_0

description:
L07_BC06
MCF-7_normcounts.csv


title: L07_BC04_036_OLBO_10

description:
L07_BC04
MCF-7_normcounts.csv


title: L07_BE06_MethodBlank_0

description:
L07_BE06
MCF-7_normcounts.csv


title: L07_AH10_067_P_Hwax_10

description:
L07_AH10
MCF-7_normcounts.csv


title: L07_AH09_079_HFO_10

description:
L07_AH09
MCF-7_normcounts.csv


title: L07_AH11_090_FO_10

description:
L07_AH11
MCF-7_normcounts.csv


title: L07_BC02_071_HFO_10

description:
L07_BC02
MCF-7_normcounts.csv


title: L07_BC01_179_VHGO_10

description:
L07_BC01
MCF-7_normcounts.csv


title: L07_AH05_096A_UDAE_10

description:
L07_AH05
MCF-7_normcounts.csv


title: L07_AH03_060_OLBO_10

description:
L07_AH03
MCF-7_normcounts.csv


title: L07_AH01_195_UDAE_10

description:
L07_AH01
MCF-7_normcounts.csv


title: L07_AH02_119_OLBO_10

description:
L07_AH02
MCF-7_normcounts.csv


title: L07_AG09_104_kerosine_10

description:
L07_AG09
MCF-7_normcounts.csv


title: L07_AG10_164_HFO_10

description:
L07_AG10
MCF-7_normcounts.csv


title: L07_AG08_108_OLBO_10

description:
L07_AG08
MCF-7_normcounts.csv


title: L07_AG11_191_BITUMEN_10

description:
L07_AG11
MCF-7_normcounts.csv


title: L07_AG07_136_slackwax_10

description:
L07_AG07
MCF-7_normcounts.csv


title: L07_AG05_135_TDAE_10

description:
L07_AG05
MCF-7_normcounts.csv

value: TDAE


title: L07_AG04_181_VHGO_10

description:
L07_AG04
MCF-7_normcounts.csv


title: L07_AG03_017_HFO_10

description:
L07_AG03
MCF-7_normcounts.csv


title: L07_AG06_MethodBlank_0

description:
L07_AG06
MCF-7_normcounts.csv


title: L07_AG02_187_2__OGO_10

description:
L07_AG02
MCF-7_normcounts.csv

value: OGO


title: L07_BC07_150_OLBO_10

description:
L07_BC07
MCF-7_normcounts.csv


title: L07_AF06_MethodBlank_0

description:
L07_AF06
MCF-7_normcounts.csv


title: L07_AG01_118_OLBO_10

description:
L07_AG01
MCF-7_normcounts.csv


title: L07_BA06_MethodBlank_0

description:
L07_BA06
MCF-7_normcounts.csv


title: L07_AF03_076_gasoline_10

description:
L07_AF03
MCF-7_normcounts.csv


title: L07_AF05_183_VHGOa_10

description:
L07_AF05
MCF-7_normcounts.csv


title: L07_AF02_083_UATO_10

description:
L07_AF02
MCF-7_normcounts.csv

value: UATO


title: L07_AH07_021_HFO_10

description:
L07_AH07
MCF-7_normcounts.csv


title: L07_AF04_192_BITUMENS_10

description:
L07_AF04
MCF-7_normcounts.csv


title: L07_AE09_092_OLBO_10

description:
L07_AE09
MCF-7_normcounts.csv


title: L07_AF01_043_kerosine_10

description:
L07_AF01
MCF-7_normcounts.csv


title: L07_AH06_MethodBlank_0

description:
L07_AH06
MCF-7_normcounts.csv


title: L07_AH04_128_kerosine_10

description:
L07_AH04
MCF-7_normcounts.csv


title: L07_AE10_085A_OLBO_10

description:
L07_AE10
MCF-7_normcounts.csv


title: L07_AE07_087_kerosine_10

description:
L07_AE07
MCF-7_normcounts.csv


title: L07_AE06_MethodBlank_0

description:
L07_AE06
MCF-7_normcounts.csv


title: L07_AE04_141_gasoline_10

description:
L07_AE04
MCF-7_normcounts.csv


title: L07_AE01_169_SRGO_10

description:
L07_AE01
MCF-7_normcounts.csv


title: L07_AE05_065_P_Hwax_10

description:
L07_AE05
MCF-7_normcounts.csv


title: L07_AE08_107_P_Hwax_10

description:
L07_AE08
MCF-7_normcounts.csv


title: L07_AD11_050_HFO_10

description:
L07_AD11
MCF-7_normcounts.csv


title: L07_AD10_089_UDAE_10

description:
L07_AD10
MCF-7_normcounts.csv


title: L07_AD09_093_petrolatum_10

description:
L07_AD09
MCF-7_normcounts.csv


title: L07_AD08_103_gasoline_10

description:
L07_AD08
MCF-7_normcounts.csv


title: L07_AD07_008_HFO_10

description:
L07_AD07
MCF-7_normcounts.csv


title: L07_AD05_074_OLBO_10

description:
L07_AD05
MCF-7_normcounts.csv


title: L07_AD06_MethodBlank_0

description:
L07_AD06
MCF-7_normcounts.csv


title: L07_AD02_127_slackwax_10

description:
L07_AD02
MCF-7_normcounts.csv


title: L07_AD01_081_OLBO_10

description:
L07_AD01
MCF-7_normcounts.csv


title: L07_AB11_063_P_Hwax_10

description:
L07_AB11
MCF-7_normcounts.csv


title: L07_AC06_MethodBlank_0

description:
L07_AC06
MCF-7_normcounts.csv


title: L07_AB10_083_UATO_10

description:
L07_AB10
MCF-7_normcounts.csv


title: L07_AB08_080_HFO_10

description:
L07_AB08
MCF-7_normcounts.csv


title: L07_AB09_187_1__OGO_10

description:
L07_AB09
MCF-7_normcounts.csv


title: L07_AB07_129_HFO_10

description:
L07_AB07
MCF-7_normcounts.csv


title: L07_AE11_124_gasoline_10

description:
L07_AE11
MCF-7_normcounts.csv


title: L07_AB05_059_dieselfuel_10

description:
L07_AB05
MCF-7_normcounts.csv


title: L07_AE03_076_gasoline_10

description:
L07_AE03
MCF-7_normcounts.csv


title: L07_AB01_041_CGO_10

description:
L07_AB01
MCF-7_normcounts.csv


title: L07_AB03_184_VHGO_10

description:
L07_AB03
MCF-7_normcounts.csv


title: L07_AB02_009_gasoline_10

description:
L07_AB02
MCF-7_normcounts.csv


title: L07_AA09_082_UATO_10

description:
L07_AA09
MCF-7_normcounts.csv


title: L07_AB06_MethodBlank_0

description:
L07_AB06
MCF-7_normcounts.csv


title: L07_AB04_155_HFO_10

description:
L07_AB04
MCF-7_normcounts.csv


title: L07_AA08_006_HFO_10

description:
L07_AA08
MCF-7_normcounts.csv


title: L07_AA03_043_kerosine_10

description:
L07_AA03
MCF-7_normcounts.csv


title: L07_AA06_MethodBlank_0

description:
L07_AA06
MCF-7_normcounts.csv


title: L07_AA10_180_VHGO_10

description:
L07_AA10
MCF-7_normcounts.csv


title: L07_AA05_151_OLBO_10

description:
L07_AA05
MCF-7_normcounts.csv


title: L06_DH08_084_UATO_1

description:
L06_DH08
MCF-7_normcounts.csv


title: L07_AA01_016_kerosine_10

description:
L07_AA01
MCF-7_normcounts.csv


title: L06_DH06_MethodBlank_0

description:
L06_DH06
MCF-7_normcounts.csv


title: L06_DH11_185_RAE_1

description:
L06_DH11
MCF-7_normcounts.csv

value: RAE


title: L06_DH05_085C_OLBO_1

description:
L06_DH05
MCF-7_normcounts.csv


title: L06_DH04_149_OLBO_1

description:
L06_DH04
MCF-7_normcounts.csv


title: L06_DG11_078_HFO_1

description:
L06_DG11
MCF-7_normcounts.csv


title: L06_DH01_049_kerosine_1

description:
L06_DH01
MCF-7_normcounts.csv


title: L06_DG09_056_gasoline_1

description:
L06_DG09
MCF-7_normcounts.csv


title: L06_DG10_139_OLBO_1

description:
L06_DG10
MCF-7_normcounts.csv


title: L06_DG08_134_HFO_1

description:
L06_DG08
MCF-7_normcounts.csv


title: L06_DG06_MethodBlank_0

description:
L06_DG06
MCF-7_normcounts.csv


title: L06_DG01_109_FO_1

description:
L06_DG01
MCF-7_normcounts.csv


title: L06_DG04_073_OLBO_1

description:
L06_DG04
MCF-7_normcounts.csv


title: L06_DG03_072_OLBO_1

description:
L06_DG03
MCF-7_normcounts.csv


title: L06_DE06_MethodBlank_0

description:
L06_DE06
MCF-7_normcounts.csv


title: L06_DE08_066_OLBO_1

description:
L06_DE08
MCF-7_normcounts.csv


title: L06_DH09_175_VHGO_1

description:
L06_DH09
MCF-7_normcounts.csv


title: L06_DE10_177_VHGO_1

description:
L06_DE10
MCF-7_normcounts.csv


title: L06_DE11_131_HFO_1

description:
L06_DE11
MCF-7_normcounts.csv


title: L06_DF06_MethodBlank_0

description:
L06_DF06
MCF-7_normcounts.csv


title: L06_DG02_064_UATO_1

description:
L06_DG02
MCF-7_normcounts.csv


title: L06_DE03_113_OLBO_1

description:
L06_DE03
MCF-7_normcounts.csv


title: L06_DE07_007_HFO_1

description:
L06_DE07
MCF-7_normcounts.csv


title: L06_DE05_173_OGO_1

description:
L06_DE05
MCF-7_normcounts.csv


title: L06_DE09_012_CGO_1

description:
L06_DE09
MCF-7_normcounts.csv


title: L06_DE04_097_HFO_1

description:
L06_DE04
MCF-7_normcounts.csv


title: L06_DG05_183_VHGOa_1

description:
L06_DG05
MCF-7_normcounts.csv


title: L06_DH10_172_SRGO_1

description:
L06_DH10
MCF-7_normcounts.csv


title: L06_DD05_112_OLBO_1

description:
L06_DD05
MCF-7_normcounts.csv


title: L06_DE02_192_BITUMENS_1

description:
L06_DE02
MCF-7_normcounts.csv


title: L06_DD11_189_BITUMEN_1

description:
L06_DD11
MCF-7_normcounts.csv


title: L06_DD07_024_HFO_1

description:
L06_DD07
MCF-7_normcounts.csv


title: L06_DC10_188_SRGO_10

description:
L06_DC10
MCF-7_normcounts.csv


title: L06_DD10_031_HFO_1

description:
L06_DD10
MCF-7_normcounts.csv


title: L06_DD04_137_OLBO_1

description:
L06_DD04
MCF-7_normcounts.csv


title: L06_DC08_175_VHGO_10

description:
L06_DC08
MCF-7_normcounts.csv


title: L06_DD01_003_CGO_1

description:
L06_DD01
MCF-7_normcounts.csv


title: L06_DD03_174_OGO_1

description:
L06_DD03
MCF-7_normcounts.csv


title: L06_DC06_MethodBlank_0

description:
L06_DC06
MCF-7_normcounts.csv


title: L06_DC05_134_HFO_10

description:
L06_DC05
MCF-7_normcounts.csv


title: L06_DC03_120_gasoline_10

description:
L06_DC03
MCF-7_normcounts.csv


title: L06_DB11_186_RAE_1

description:
L06_DB11
MCF-7_normcounts.csv


title: L06_DE01_111_petrolatum_1

description:
L06_DE01
MCF-7_normcounts.csv


title: L06_DB08_146_gasoline_1

description:
L06_DB08
MCF-7_normcounts.csv


title: L06_DB06_MethodBlank_0

description:
L06_DB06
MCF-7_normcounts.csv


title: L06_DB10_171_SRGO_1

description:
L06_DB10
MCF-7_normcounts.csv


title: L06_DB07_168_SRGO_1

description:
L06_DB07
MCF-7_normcounts.csv


title: L06_DB05_061_P_Hwax_1

description:
L06_DB05
MCF-7_normcounts.csv


title: L06_DB04_117_OLBO_1

description:
L06_DB04
MCF-7_normcounts.csv


title: L06_DB03_147_OLBO_1

description:
L06_DB03
MCF-7_normcounts.csv


title: L06_DB02_011_kerosine_1

description:
L06_DB02
MCF-7_normcounts.csv


title: L06_DA11_028_HFO_1

description:
L06_DA11
MCF-7_normcounts.csv


title: L06_DD09_176_VHGO_1

description:
L06_DD09
MCF-7_normcounts.csv


title: L06_DD06_MethodBlank_0

description:
L06_DD06
MCF-7_normcounts.csv


title: L06_DA08_025_HFO_1

description:
L06_DA08
MCF-7_normcounts.csv


title: L06_DA10_085D_OLBO_1

description:
L06_DA10
MCF-7_normcounts.csv


title: L06_DA07_018_HFO_1

description:
L06_DA07
MCF-7_normcounts.csv


title: L06_DA05_138_OLBO_1

description:
L06_DA05
MCF-7_normcounts.csv


title: L06_DA06_MethodBlank_0

description:
L06_DA06
MCF-7_normcounts.csv


title: L06_DA03_062_P_Hwax_1

description:
L06_DA03
MCF-7_normcounts.csv


title: L06_CH11_185_RAE_1

description:
L06_CH11
MCF-7_normcounts.csv


title: L06_CH09_175_VHGO_1

description:
L06_CH09
MCF-7_normcounts.csv


title: L06_DA02_160_FO_1

description:
L06_DA02
MCF-7_normcounts.csv


title: L06_CH06_MethodBlank_0

description:
L06_CH06
MCF-7_normcounts.csv


title: L06_CH08_084_UATO_1

description:
L06_CH08
MCF-7_normcounts.csv


title: L06_DC01_092_OLBO_10

description:
L06_DC01
MCF-7_normcounts.csv


title: L06_CH10_172_SRGO_1

description:
L06_CH10
MCF-7_normcounts.csv


title: L06_DA01_046_gasoline_1

description:
L06_DA01
MCF-7_normcounts.csv


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L06_CH04
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L06_CG11
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L06_CG09
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L06_CG08
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L06_CG10
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L06_CG05
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L06_CH02
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L06_CH01
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L06_CG04
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L06_CE11
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L06_CE10
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L06_CF06
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L06_CE08
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L06_CE09
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L06_CE07
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L06_CG02
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L06_CE06
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L06_CG03
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L06_CE05
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L06_CE04
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L06_CE03
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L06_CE02
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L06_CE01
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L06_CD10
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L06_CD09
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L06_DA04
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L06_CD06
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L06_CG06
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L06_CD04
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L06_CC10
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L06_CD01
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L06_CD03
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L06_CD02
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L06_CG01
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L06_CD05
MCF-7_normcounts.csv


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L06_CC08
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L06_CC03
MCF-7_normcounts.csv


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L06_CB10
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L06_CB08
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L06_CB07
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L06_CB11
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L06_CC05
MCF-7_normcounts.csv


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L06_CB05
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L06_CD11
MCF-7_normcounts.csv


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L06_CD07
MCF-7_normcounts.csv


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L06_CB01
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L06_CA10
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L06_CA08
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L06_CA07
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L06_CA11
MCF-7_normcounts.csv


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L06_CB02
MCF-7_normcounts.csv


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L06_CA06
MCF-7_normcounts.csv


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L06_CA04
MCF-7_normcounts.csv


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L06_CA05
MCF-7_normcounts.csv


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L06_CA03
MCF-7_normcounts.csv


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L06_CA02
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L06_BH06
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L06_CC06
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L06_BG11
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L06_BG10
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L06_CA01
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L06_BG09
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L06_BG08
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L06_BG04
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L06_CB06
MCF-7_normcounts.csv


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L06_BG06
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L06_CB04
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L06_BG03
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L06_BG01
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L06_BF10
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L06_CB03
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L06_BF08
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L06_BF09
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L06_BF07
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L06_BF04
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L06_BE10
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L06_BF02
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L06_BE11
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L06_BF03
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L06_BF05
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L06_BE09
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L06_BE08
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L06_BE06
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L06_BE05
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L06_BE04
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L06_BE03
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L06_BE07
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L06_BE02
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L06_BD06
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L06_BG02
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L06_BD05
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L06_BD04
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L06_BD02
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L06_BD03
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L06_BC11
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L06_BC10
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L06_BC09
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L06_BC08
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L06_BC07
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L06_BC05
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L06_BF06
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L06_BC06
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L06_BC04
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L06_BC02
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L06_BB10
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L06_BC01
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L06_BB11
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L06_BB08
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L06_BB09
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L06_BB06
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L06_BB07
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L06_BB01
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L06_BA06
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L06_BB05
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L06_BD01
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L06_AH10
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L06_AH11
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L06_AH06
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L06_AH05
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L06_AH09
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L06_AG10
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L06_BB03
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L06_AH03
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L06_AH04
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L06_AG11
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L06_AH07
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L06_AG07
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L06_AG09
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L06_AH02
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L06_AG08
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L06_AH01
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L06_AG04
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L06_AG02
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L06_AG06
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L06_AF05
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L06_AF06
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L06_AG05
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L06_AG01
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L06_AF04
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L06_AF02
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L06_AF03
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L06_AE11
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L06_AF01
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L06_AE10
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L06_AE09
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L06_AE08
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L06_AE06
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L06_AE07
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L06_AE04
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L06_AE01
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L06_AE03
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L06_AD10
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L06_AD11
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L06_AD09
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L06_AD07
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L06_AD08
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L06_AD05
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L06_AG03
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L06_AD01
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L06_AD06
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L06_AC06
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L06_AB08
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L06_AB11
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L06_AB07
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L06_AB09
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L06_AB04
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L06_AB05
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L06_AB03
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L06_AB02
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L06_AA10
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L06_AA09
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L06_AB01
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L06_AE05
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L06_AA08
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L06_AA06
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L06_AA05
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L06_AA03
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L05_DH06
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L06_AA01
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L05_DG11
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L05_DG10
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L05_DG08
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L06_AD02
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L05_DG09
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L06_AB10
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L05_DG04
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L06_AB06
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L05_DG01
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L05_DF09
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L05_DG03
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L05_DF10
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L05_DG02
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L05_DF07
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L05_DF04
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L05_DF06
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L05_DF05
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L05_DF02
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L05_DE10
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L05_DE09
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L05_DE07
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L05_DE06
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L05_DE04
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L05_DE05
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L05_DE03
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L05_DG06
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L05_DD05
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L05_DD06
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L05_DE02
MCF-7_normcounts.csv


title: L05_DD01_184_VHGO_1

description:
L05_DD01
MCF-7_normcounts.csv


title: L05_DF08_148_OLBO_1

description:
L05_DF08
MCF-7_normcounts.csv


title: L05_DC11_193_OXASPH_1

description:
L05_DC11
MCF-7_normcounts.csv


title: L05_DC09_120_gasoline_1

description:
L05_DC09
MCF-7_normcounts.csv


title: L05_DD04_177_VHGO_1

description:
L05_DD04
MCF-7_normcounts.csv


title: L05_DD03_020_HFO_1

description:
L05_DD03
MCF-7_normcounts.csv


title: L05_DC08_130_CGO_1

description:
L05_DC08
MCF-7_normcounts.csv


title: L05_DC07_150_OLBO_1

description:
L05_DC07
MCF-7_normcounts.csv


title: L05_DC05_140_OLBO_1

description:
L05_DC05
MCF-7_normcounts.csv


title: L05_DC10_182_VHGO_1

description:
L05_DC10
MCF-7_normcounts.csv


title: L05_DF03_178_VHGO_1

description:
L05_DF03
MCF-7_normcounts.csv


title: L05_DC06_MethodBlank_0

description:
L05_DC06
MCF-7_normcounts.csv


title: L05_DE11_188_SRGO_100

description:
L05_DE11
MCF-7_normcounts.csv


title: L05_DB11_115_OLBO_1

description:
L05_DB11
MCF-7_normcounts.csv


title: L05_DE08_175_VHGO_1

description:
L05_DE08
MCF-7_normcounts.csv


title: L05_DC01_179_VHGO_1

description:
L05_DC01
MCF-7_normcounts.csv


title: L05_DB10_085B_OLBO_1

description:
L05_DB10
MCF-7_normcounts.csv


title: L05_DB08_071_HFO_1

description:
L05_DB08
MCF-7_normcounts.csv


title: L05_DB07_166_HFO_1

description:
L05_DB07
MCF-7_normcounts.csv


title: L05_DB06_MethodBlank_0

description:
L05_DB06
MCF-7_normcounts.csv


title: L05_DB09_190_BITUMENS_1

description:
L05_DB09
MCF-7_normcounts.csv


title: L05_DB05_091_HFO_1

description:
L05_DB05
MCF-7_normcounts.csv


title: L05_DB03_188_SRGO_1

description:
L05_DB03
MCF-7_normcounts.csv


title: L05_DB01_154_OLBO_1

description:
L05_DB01
MCF-7_normcounts.csv


title: L04_DH11_090_FO_1

description:
L04_DH11
MCF-7_normcounts.csv


title: L04_DH10_067_P_Hwax_1

description:
L04_DH10
MCF-7_normcounts.csv


title: L05_DA06_MethodBlank_0

description:
L05_DA06
MCF-7_normcounts.csv


title: L04_DH09_079_HFO_1

description:
L04_DH09
MCF-7_normcounts.csv


title: L04_DH07_021_HFO_1

description:
L04_DH07
MCF-7_normcounts.csv


title: L04_DH04_128_kerosine_1

description:
L04_DH04
MCF-7_normcounts.csv


title: L04_DH06_MethodBlank_0

description:
L04_DH06
MCF-7_normcounts.csv


title: L04_DH02_119_OLBO_1

description:
L04_DH02
MCF-7_normcounts.csv


title: L04_DH01_195_UDAE_1

description:
L04_DH01
MCF-7_normcounts.csv


title: L05_DC04_036_OLBO_1

description:
L05_DC04
MCF-7_normcounts.csv


title: L04_DH05_096A_UDAE_1

description:
L04_DH05
MCF-7_normcounts.csv


title: L04_DH03_060_OLBO_1

description:
L04_DH03
MCF-7_normcounts.csv


title: L04_DG09_104_kerosine_1

description:
L04_DG09
MCF-7_normcounts.csv


title: L04_DG11_191_BITUMEN_1

description:
L04_DG11
MCF-7_normcounts.csv


title: L04_DG10_164_HFO_1

description:
L04_DG10
MCF-7_normcounts.csv


title: L05_DC02_145_HRBO_1

description:
L05_DC02
MCF-7_normcounts.csv


title: L04_DG07_136_slackwax_1

description:
L04_DG07
MCF-7_normcounts.csv


title: L04_DG06_MethodBlank_0

description:
L04_DG06
MCF-7_normcounts.csv


title: L04_DG05_135_TDAE_1

description:
L04_DG05
MCF-7_normcounts.csv


title: L04_DG04_181_VHGO_1

description:
L04_DG04
MCF-7_normcounts.csv


title: L04_DG03_017_HFO_1

description:
L04_DG03
MCF-7_normcounts.csv


title: L04_DG08_108_OLBO_1

description:
L04_DG08
MCF-7_normcounts.csv


title: L04_DF04_192_BITUMENS_1

description:
L04_DF04
MCF-7_normcounts.csv


title: L04_DF06_MethodBlank_0

description:
L04_DF06
MCF-7_normcounts.csv


title: L04_DG01_118_OLBO_1

description:
L04_DG01
MCF-7_normcounts.csv


title: L04_DG02_187_2__OGO_1

description:
L04_DG02
MCF-7_normcounts.csv


title: L04_DF03_076_gasoline_1

description:
L04_DF03
MCF-7_normcounts.csv


title: L04_DE09_092_OLBO_1

description:
L04_DE09
MCF-7_normcounts.csv


title: L04_DF05_183_VHGOa_1

description:
L04_DF05
MCF-7_normcounts.csv


title: L04_DE08_107_P_Hwax_1

description:
L04_DE08
MCF-7_normcounts.csv


title: L04_DE06_MethodBlank_0

description:
L04_DE06
MCF-7_normcounts.csv


title: L04_DE04_141_gasoline_1

description:
L04_DE04
MCF-7_normcounts.csv


title: L04_DE05_065_P_Hwax_1

description:
L04_DE05
MCF-7_normcounts.csv


title: L04_DD11_050_HFO_1

description:
L04_DD11
MCF-7_normcounts.csv


title: L04_DE07_087_kerosine_1

description:
L04_DE07
MCF-7_normcounts.csv


title: L04_DD10_089_UDAE_1

description:
L04_DD10
MCF-7_normcounts.csv


title: L04_DD09_093_petrolatum_1

description:
L04_DD09
MCF-7_normcounts.csv


title: L04_DE03_076_gasoline_1

description:
L04_DE03
MCF-7_normcounts.csv


title: L04_DD08_103_gasoline_1

description:
L04_DD08
MCF-7_normcounts.csv


title: L04_DE01_169_SRGO_1

description:
L04_DE01
MCF-7_normcounts.csv


title: L04_DD05_074_OLBO_1

description:
L04_DD05
MCF-7_normcounts.csv


title: L04_DD06_MethodBlank_0

description:
L04_DD06
MCF-7_normcounts.csv


title: L04_DD07_008_HFO_1

description:
L04_DD07
MCF-7_normcounts.csv


title: L04_DB08_080_HFO_1

description:
L04_DB08
MCF-7_normcounts.csv


title: L04_DB11_063_P_Hwax_1

description:
L04_DB11
MCF-7_normcounts.csv


title: L04_DC06_MethodBlank_0

description:
L04_DC06
MCF-7_normcounts.csv


title: L04_DB09_187_1__OGO_1

description:
L04_DB09
MCF-7_normcounts.csv


title: L04_DB07_129_HFO_1

description:
L04_DB07
MCF-7_normcounts.csv


title: L04_DB10_083_UATO_1

description:
L04_DB10
MCF-7_normcounts.csv


title: L04_DE11_124_gasoline_1

description:
L04_DE11
MCF-7_normcounts.csv


title: L04_DB06_MethodBlank_0

description:
L04_DB06
MCF-7_normcounts.csv


title: L04_DE10_085A_OLBO_1

description:
L04_DE10
MCF-7_normcounts.csv


title: L04_DB03_184_VHGO_1

description:
L04_DB03
MCF-7_normcounts.csv


title: L04_DB02_009_gasoline_1

description:
L04_DB02
MCF-7_normcounts.csv


title: L04_DB05_059_dieselfuel_1

description:
L04_DB05
MCF-7_normcounts.csv


title: L04_DA10_180_VHGO_1

description:
L04_DA10
MCF-7_normcounts.csv


title: L04_DA08_006_HFO_1

description:
L04_DA08
MCF-7_normcounts.csv


title: L04_DA06_MethodBlank_0

description:
L04_DA06
MCF-7_normcounts.csv


title: L04_DA05_151_OLBO_1

description:
L04_DA05
MCF-7_normcounts.csv


title: L04_DA03_043_kerosine_1

description:
L04_DA03
MCF-7_normcounts.csv


title: L04_DA01_016_kerosine_1

description:
L04_DA01
MCF-7_normcounts.csv


title: L05_CH10_172_SRGO_100

description:
L05_CH10
Hepatocyte_normcounts.csv

source_name: Hepatocyte

value: iCell Hepatocytes


title: L05_CH11_185_RAE_100

description:
L05_CH11
Hepatocyte_normcounts.csv


title: L05_CH09_175_VHGO_100

description:
L05_CH09
Hepatocyte_normcounts.csv


title: L05_CH06_MethodBlank_0

description:
L05_CH06
Hepatocyte_normcounts.csv


title: L05_CH04_149_OLBO_100

description:
L05_CH04
Hepatocyte_normcounts.csv


title: L05_CH08_084_UATO_100

description:
L05_CH08
Hepatocyte_normcounts.csv


title: L05_CG11_078_HFO_100

description:
L05_CG11
Hepatocyte_normcounts.csv


title: L05_CH05_085C_OLBO_100

description:
L05_CH05
Hepatocyte_normcounts.csv


title: L05_CG09_056_gasoline_100

description:
L05_CG09
Hepatocyte_normcounts.csv


title: L05_CG10_139_OLBO_100

description:
L05_CG10
Hepatocyte_normcounts.csv


title: L05_CH01_049_kerosine_100

description:
L05_CH01
Hepatocyte_normcounts.csv


title: L05_CG06_MethodBlank_0

description:
L05_CG06
Hepatocyte_normcounts.csv


title: L05_CG08_134_HFO_100

description:
L05_CG08
Hepatocyte_normcounts.csv


title: L04_DB04_155_HFO_1

description:
L04_DB04
MCF-7_normcounts.csv

value: MCF7 Cells


title: L04_DB01_041_CGO_1

description:
L04_DB01
MCF-7_normcounts.csv


title: L05_CG03_072_OLBO_100

description:
L05_CG03
Hepatocyte_normcounts.csv


title: L05_CG04_073_OLBO_100

description:
L05_CG04
Hepatocyte_normcounts.csv


title: L05_CG05_183_VHGOa_100

description:
L05_CG05
Hepatocyte_normcounts.csv


title: L05_CG02_064_UATO_100

description:
L05_CG02
Hepatocyte_normcounts.csv


title: L05_CG01_109_FO_100

description:
L05_CG01
Hepatocyte_normcounts.csv


title: L04_DA09_082_UATO_1

description:
L04_DA09
MCF-7_normcounts.csv


title: L05_CF06_MethodBlank_0

description:
L05_CF06
Hepatocyte_normcounts.csv


title: L05_CE11_131_HFO_100

description:
L05_CE11
Hepatocyte_normcounts.csv


title: L05_CE10_177_VHGO_100

description:
L05_CE10
Hepatocyte_normcounts.csv


title: L05_CE09_012_CGO_100

description:
L05_CE09
Hepatocyte_normcounts.csv


title: L05_CE08_066_OLBO_100

description:
L05_CE08
Hepatocyte_normcounts.csv


title: L05_CE06_MethodBlank_0

description:
L05_CE06
Hepatocyte_normcounts.csv


title: L05_CE05_173_OGO_100

description:
L05_CE05
Hepatocyte_normcounts.csv


title: L05_CE03_113_OLBO_100

description:
L05_CE03
Hepatocyte_normcounts.csv


title: L05_CH02_069_TDAE_100

description:
L05_CH02
Hepatocyte_normcounts.csv


title: L05_CE01_111_petrolatum_100

description:
L05_CE01
Hepatocyte_normcounts.csv


title: L05_CD12_034_HFO_100

description:
L05_CD12
Hepatocyte_normcounts.csv


title: L05_CE04_097_HFO_100

description:
L05_CE04
Hepatocyte_normcounts.csv


title: L05_CE02_192_BITUMENS_100

description:
L05_CE02
Hepatocyte_normcounts.csv


title: L05_CD11_189_BITUMEN_100

description:
L05_CD11
Hepatocyte_normcounts.csv


title: L05_CD09_176_VHGO_100

description:
L05_CD09
Hepatocyte_normcounts.csv


title: L05_CD07_024_HFO_100

description:
L05_CD07
Hepatocyte_normcounts.csv


title: L05_CD05_112_OLBO_100

description:
L05_CD05
Hepatocyte_normcounts.csv


title: L05_CD10_031_HFO_100

description:
L05_CD10
Hepatocyte_normcounts.csv


title: L05_CD02_020_HFO_100

description:
L05_CD02
Hepatocyte_normcounts.csv


title: L05_CC08_175_VHGO_10

description:
L05_CC08
Hepatocyte_normcounts.csv


title: L05_CD03_174_OGO_100

description:
L05_CD03
Hepatocyte_normcounts.csv


title: L05_CC10_188_SRGO_10

description:
L05_CC10
Hepatocyte_normcounts.csv


title: L05_CC05_134_HFO_10

description:
L05_CC05
Hepatocyte_normcounts.csv


title: L05_CC03_120_gasoline_10

description:
L05_CC03
Hepatocyte_normcounts.csv


title: L05_CD01_003_CGO_100

description:
L05_CD01
Hepatocyte_normcounts.csv


title: L05_CB10_171_SRGO_100

description:
L05_CB10
Hepatocyte_normcounts.csv


title: L05_CE07_007_HFO_100

description:
L05_CE07
Hepatocyte_normcounts.csv


title: L05_CB07_168_SRGO_100

description:
L05_CB07
Hepatocyte_normcounts.csv


title: L05_CB08_146_gasoline_100

description:
L05_CB08
Hepatocyte_normcounts.csv


title: L05_CD06_MethodBlank_0

description:
L05_CD06
Hepatocyte_normcounts.csv


title: L05_CC06_MethodBlank_0

description:
L05_CC06
Hepatocyte_normcounts.csv


title: L05_CB06_MethodBlank_0

description:
L05_CB06
Hepatocyte_normcounts.csv


title: L05_CB05_061_P_Hwax_100

description:
L05_CB05
Hepatocyte_normcounts.csv

value: WAX


title: L05_CB03_147_OLBO_100

description:
L05_CB03
Hepatocyte_normcounts.csv


title: L05_CB02_011_kerosine_100

description:
L05_CB02
Hepatocyte_normcounts.csv


title: L05_CA08_025_HFO_100

description:
L05_CA08
Hepatocyte_normcounts.csv


title: L05_CC01_092_OLBO_10

description:
L05_CC01
Hepatocyte_normcounts.csv


title: L05_CA10_085D_OLBO_100

description:
L05_CA10
Hepatocyte_normcounts.csv


title: L05_CA11_028_HFO_100

description:
L05_CA11
Hepatocyte_normcounts.csv


title: L05_CD04_137_OLBO_100

description:
L05_CD04
Hepatocyte_normcounts.csv


title: L05_CB01_152_slackwax_100

description:
L05_CB01
Hepatocyte_normcounts.csv


title: L05_CA07_018_HFO_100

description:
L05_CA07
Hepatocyte_normcounts.csv


title: L05_CA06_MethodBlank_0

description:
L05_CA06
Hepatocyte_normcounts.csv


title: L05_CA04_086_kerosine_100

description:
L05_CA04
Hepatocyte_normcounts.csv


title: L05_CB11_186_RAE_100

description:
L05_CB11
Hepatocyte_normcounts.csv


title: L05_CA05_138_OLBO_100

description:
L05_CA05
Hepatocyte_normcounts.csv


title: L05_BG10_123_kerosine_100

description:
L05_BG10
Hepatocyte_normcounts.csv


title: L05_CA01_046_gasoline_100

description:
L05_CA01
Hepatocyte_normcounts.csv


title: L05_BG09_170_SRGO_100

description:
L05_BG09
Hepatocyte_normcounts.csv

value: SRGO


title: L05_CA03_062_P_Hwax_100

description:
L05_CA03
Hepatocyte_normcounts.csv


title: L05_BG11_058_HFO_100

description:
L05_BG11
Hepatocyte_normcounts.csv


title: L05_CA02_160_FO_100

description:
L05_CA02
Hepatocyte_normcounts.csv


title: L05_BG08_102_CGO_100

description:
L05_BG08
Hepatocyte_normcounts.csv


title: L05_BG06_MethodBlank_0

description:
L05_BG06
Hepatocyte_normcounts.csv


title: L05_BG01_121_CGO_100

description:
L05_BG01
Hepatocyte_normcounts.csv


title: L05_BG03_153_OLBO_100

description:
L05_BG03
Hepatocyte_normcounts.csv


title: L05_BG02_202_Paraffinwax_100

description:
L05_BG02
Hepatocyte_normcounts.csv


title: L05_BF09_096B_UDAE_100

description:
L05_BF09
Hepatocyte_normcounts.csv


title: L05_BF07_114_OLBO_100

description:
L05_BF07
Hepatocyte_normcounts.csv


title: L05_BF06_MethodBlank_0

description:
L05_BF06
Hepatocyte_normcounts.csv


title: L05_BF04_197_HFO_100

description:
L05_BF04
Hepatocyte_normcounts.csv


title: L05_BF02_132_gasoline_100

description:
L05_BF02
Hepatocyte_normcounts.csv


title: L05_BF03_178_VHGO_100

description:
L05_BF03
Hepatocyte_normcounts.csv


title: L05_BF05_196_petrolatum_100

description:
L05_BF05
Hepatocyte_normcounts.csv


title: L05_BE11_188_SRGO_100

description:
L05_BE11
Hepatocyte_normcounts.csv


title: L05_BE10_188_SRGO_1

description:
L05_BE10
Hepatocyte_normcounts.csv


title: L05_BE09_175_VHGO_100

description:
L05_BE09
Hepatocyte_normcounts.csv


title: L05_BE07_134_HFO_100

description:
L05_BE07
Hepatocyte_normcounts.csv


title: L05_BH06_MethodBlank_0

description:
L05_BH06
Hepatocyte_normcounts.csv


title: L05_BE03_120_gasoline_1

description:
L05_BE03
Hepatocyte_normcounts.csv


title: L05_BE06_MethodBlank_0

description:
L05_BE06
Hepatocyte_normcounts.csv


title: L05_BD06_MethodBlank_0

description:
L05_BD06
Hepatocyte_normcounts.csv


title: L05_BE05_134_HFO_1

description:
L05_BE05
Hepatocyte_normcounts.csv


title: L05_BE04_120_gasoline_100

description:
L05_BE04
Hepatocyte_normcounts.csv


title: L05_BF10_070_CGO_100

description:
L05_BF10
Hepatocyte_normcounts.csv


title: L05_BE01_092_OLBO_1

description:
L05_BE01
Hepatocyte_normcounts.csv


title: L05_BD03_020_HFO_100

description:
L05_BD03
Hepatocyte_normcounts.csv


title: L05_BD05_168_SRGO_100

description:
L05_BD05
Hepatocyte_normcounts.csv


title: L05_BE02_092_OLBO_100

description:
L05_BE02
Hepatocyte_normcounts.csv


title: L05_BF08_148_OLBO_100

description:
L05_BF08
Hepatocyte_normcounts.csv


title: L05_BD04_177_VHGO_100

description:
L05_BD04
Hepatocyte_normcounts.csv


title: L05_BD01_184_VHGO_100

description:
L05_BD01
Hepatocyte_normcounts.csv


title: L05_BF01_075_OLBO_100

description:
L05_BF01
Hepatocyte_normcounts.csv


title: L05_BC09_120_gasoline_100

description:
L05_BC09
Hepatocyte_normcounts.csv


title: L05_BC08_130_CGO_100

description:
L05_BC08
Hepatocyte_normcounts.csv


title: L05_BC07_150_OLBO_100

description:
L05_BC07
Hepatocyte_normcounts.csv


title: L05_BE08_175_VHGO_1

description:
L05_BE08
Hepatocyte_normcounts.csv


title: L05_BC05_140_OLBO_100

description:
L05_BC05
Hepatocyte_normcounts.csv


title: L05_BC06_MethodBlank_0

description:
L05_BC06
Hepatocyte_normcounts.csv


title: L05_BC10_182_VHGO_100

description:
L05_BC10
Hepatocyte_normcounts.csv


title: L05_CB04_117_OLBO_100

description:
L05_CB04
Hepatocyte_normcounts.csv


title: L05_BC04_036_OLBO_100

description:
L05_BC04
Hepatocyte_normcounts.csv


title: L05_BC02_145_HRBO_100

description:
L05_BC02
Hepatocyte_normcounts.csv


title: L05_BC01_179_VHGO_100

description:
L05_BC01
Hepatocyte_normcounts.csv


title: L05_BB09_190_BITUMENS_100

description:
L05_BB09
Hepatocyte_normcounts.csv


title: L05_BB11_115_OLBO_100

description:
L05_BB11
Hepatocyte_normcounts.csv


title: L05_BB10_085B_OLBO_100

description:
L05_BB10
Hepatocyte_normcounts.csv


title: L05_BB08_071_HFO_100

description:
L05_BB08
Hepatocyte_normcounts.csv


title: L05_BB06_MethodBlank_0

description:
L05_BB06
Hepatocyte_normcounts.csv


title: L05_BD02_091_HFO_100

description:
L05_BD02
Hepatocyte_normcounts.csv


title: L05_BB03_188_SRGO_100

description:
L05_BB03
Hepatocyte_normcounts.csv


title: L05_BB05_091_HFO_100

description:
L05_BB05
Hepatocyte_normcounts.csv


title: L05_BA06_MethodBlank_0

description:
L05_BA06
Hepatocyte_normcounts.csv


title: L05_BC11_193_OXASPH_100

description:
L05_BC11
Hepatocyte_normcounts.csv


title: L05_AH10_067_P_Hwax_100

description:
L05_AH10
Hepatocyte_normcounts.csv


title: L05_BB01_154_OLBO_100

description:
L05_BB01
Hepatocyte_normcounts.csv


title: L05_AH06_MethodBlank_0

description:
L05_AH06
Hepatocyte_normcounts.csv


title: L05_AH07_021_HFO_100

description:
L05_AH07
Hepatocyte_normcounts.csv


title: L05_AH03_060_OLBO_100

description:
L05_AH03
Hepatocyte_normcounts.csv


title: L05_AH04_128_kerosine_100

description:
L05_AH04
Hepatocyte_normcounts.csv

value: KER


title: L05_AH02_119_OLBO_100

description:
L05_AH02
Hepatocyte_normcounts.csv

value: BO


title: L05_BB07_166_HFO_100

description:
L05_BB07
Hepatocyte_normcounts.csv

value: HFO


title: L05_AH05_096A_UDAE_100

description:
L05_AH05
Hepatocyte_normcounts.csv


title: L05_AG11_191_BITUMEN_100

description:
L05_AG11
Hepatocyte_normcounts.csv


title: L05_AG08_108_OLBO_100

description:
L05_AG08
Hepatocyte_normcounts.csv


title: L05_AG09_104_kerosine_100

description:
L05_AG09
Hepatocyte_normcounts.csv


title: L05_AG07_136_slackwax_100

description:
L05_AG07
Hepatocyte_normcounts.csv


title: L05_AH09_079_HFO_100

description:
L05_AH09
Hepatocyte_normcounts.csv


title: L05_AH01_195_UDAE_100

description:
L05_AH01
Hepatocyte_normcounts.csv


title: L05_AG06_MethodBlank_0

description:
L05_AG06
Hepatocyte_normcounts.csv


title: L05_AG05_135_TDAE_100

description:
L05_AG05
Hepatocyte_normcounts.csv


title: L05_AG03_017_HFO_100

description:
L05_AG03
Hepatocyte_normcounts.csv


title: L05_AG04_181_VHGO_100

description:
L05_AG04
Hepatocyte_normcounts.csv


title: L05_AH11_090_FO_100

description:
L05_AH11
Hepatocyte_normcounts.csv

value: FO


title: L05_AG02_187_2__OGO_100

description:
L05_AG02
Hepatocyte_normcounts.csv


title: L05_AG10_164_HFO_100

description:
L05_AG10
Hepatocyte_normcounts.csv


title: L05_AF05_183_VHGOa_100

description:
L05_AF05
Hepatocyte_normcounts.csv


title: L05_AG01_118_OLBO_100

description:
L05_AG01
Hepatocyte_normcounts.csv


title: 96hpi - mock - replicate 2

city: Muenster

first: Hans

middle: R

last: Schöller

state: NRW

address: Roentgenstrasse 20

department: Cell and Developmental Biology

country: Germany

institute: Max Planck Institute for Molecular Biomedicine

data_processing:
Samples were demultiplexed usign the Illumina software bcl2fastq v2.20.0
Alignment to a customized reference concatenation of human and SARS-CoV-2 genomes was done using STAR v2.7.7a
A table of read counts per gene was obtained  with STAR v2.7.7a and further processing was done in the statistical software environment R v4.0.3
Genome_build: GRCh38.p13 + NC_045512.2
Supplementary_files_format_and_content: Comma Separated Values (csv) matrix file of raw counts per gene for each sample

source_name: retinal organoid

growth_protocol: Retinal organoid generation (based on Capowski et al. 2019)

extract_protocol:
TRIzol® reagent according manufacturer´s recommended protocol
NEBNext® Ultra TM II RNA Library Prep kit for Illumina®

treatment_protocol: Triplicates infected with SARS-CoV-2 and incubated for 24 and 96 hours

tag: tissue type

value: Retinal organoids derived from Gibco episomal iPSC line A18945

value: Control

tag: incubation period

tag: day of organoid differentiation


title: 96hpi - mock - replicate 1


title: 96hpi - mock - replicate 3


title: L05_AF04_192_BITUMENS_100

description:
L05_AF04
Hepatocyte_normcounts.csv


title: L05_AF02_083_UATO_100

description:
L05_AF02
Hepatocyte_normcounts.csv


title: 24hpi - mock - replicate 2


title: L05_AF01_043_kerosine_100

description:
L05_AF01
Hepatocyte_normcounts.csv


title: 24hpi - mock - replicate 3


title: 24hpi - mock - replicate 1


title: L05_AF03_076_gasoline_100

description:
L05_AF03
Hepatocyte_normcounts.csv

value: NAPTHA


title: L05_AE11_124_gasoline_100

description:
L05_AE11
Hepatocyte_normcounts.csv


title: L05_AE10_085A_OLBO_100

description:
L05_AE10
Hepatocyte_normcounts.csv


title: Granulosas_Ad-Cre_rep3

type: RNA

city: Saint-Hyacinthe

first: Philippe

last: Godin

state: Québec

address: 3200 Sicotte

country: Canada

institute: Université de Montréal

hyb_protocol: After fragmentation and labeling, 3.5µg DNA target was hybridized on GeneChip® Clariom™ S Mouse (Affymetrix  now Thermo Fisher Scientific) and incubated at 45°C in the Genechip® Hybridization oven 640 (Affymetrix) for 17 hours at 60 rpm. GeneChips were then washed in a GeneChips® Fluidics Station 450 (Affymetrix  now ThermoFisher) using GeneChip Hybridization Wash and Stain kit according to the manufacturer’s instructions (Affymetrix now ThermoFisher).

scan_protocol: The microarrays were scanned on a GeneChip® scanner 3000 (Affymetrix  now ThermoFisher).

data_processing: Results were analyzed using Transcriptome Analysis Console software (4.0). Thresholds used for p-value and fold change were 0.05 and +/-1.5 respectively.

organism: Mus musculus

source_name: Granulosa cells from 3 week-old Yap1/Taz-floxed mice superstimulated with eCG, 18h with Adenovirus Cre in culture

label_protocol: Sense-strand cDNA was synthesized from 100 ng of total RNA, and fragmentation and labeling were performed to produce ss DNA with the GeneChip® WT Terminal Labeling Kit according to manufacturer’s instructions (Affymetrix now Thermo Fisher Scientific).

growth_protocol: Isolated GCs from Yap1f/f, Tazf/f and Yap1f/f;Tazf/f eCG-primed immature mice were seeded onto 96-well plates (0.5 ovaries/well) in MEM 1X (ThermoFisher Scientific) supplemented with 0.25mM sodium pyruvate (ThermoFisher Scientific), 3mM L-glutamine (Wisent Inc.), penicillin-streptomycin (Wisent Inc.) and 2% FBS for 4 hours before treatment (50ul/well).

extract_protocol: 300ul of RLT Buffer supplemented with 1% β-Mercaptoethanol was added per well. Wells were scraped and total RNA was extracted using the RNeasy Mini kit (Qiagen), according to the manufacturer’s instructions.

treatment_protocol: Medium was slowly aspirated and discarded. Then the same medium supplemented with either Ad5-CMV-eGFP (Ad-eGFP; eGFP control adenovirus; Vector Biolabs) or Ad5-Cre-eGFP (Ad-Cre; Cre recombinase adenovirus; Vector Biolabs) was added (50ul/well) for 18 hours using a multiplicity of infection of 50 .

tag: Sex

value: Female

tag: strain

tag: cell type

value: Granulosa cells

tag: physiological stage

value: After 44h of in vivo eCG stimulation

tag: genotype

value: YAP1/TAZ knockdown


title: Granulosas_Ad-Cre_rep1


title: Granulosas_Ad-Cre_rep2


title: Granulosas_GFP_rep3

source_name: Granulosa cells from 3 week-old Yap1/Taz-floxed mice superstimulated with eCG, 18h with Adenovirus eGFP in culture

value: control


title: Granulosas_GFP_rep2


title: Granulosas_GFP_rep1


title: L05_AE08_107_P_Hwax_100

description:
L05_AE08
Hepatocyte_normcounts.csv


title: ML_H2_48a_F3

city: Albany

first: Olabisi

last: Ojo

state: GA

address: 504 College Dr

department: Natural Sciences

institute: Albany State University

data_processing:
FastQC used to examine quality of raw reads
Trimmomatic was used to trim the Illumina specific adaptors and primers
EDGE-pro was used to index and align the reads to the BW25113 reference genome
DESeq was used to compare the difference in the number of times the genes showed up in each sample
Genome_build: Genbank Reference sequence NC_002677.1 was used in the indexing and alignment step
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

organism: Mycobacterium leprae

source_name: M. leprae_48h_test_replicate

growth_protocol: Mouse footpad grown (5 months) M. leprae was maintained in axenic media for 48 h and 96 h, at 33°C before harvest for RNA extraction. RNA was prepared from samples stored in 70% Ethanol.

extract_protocol:
Total RNA was extracted using using a FastPrep-24 vertical homogenizer (MP BioMedicals) using FastPrep Lysing Matrix B tubes. Residual DNA was digested using the RNase-free DNase kit (Qiagen). rRNA depletion was by Ribo-Zero rRNA Removal Kit (Illumina)
RNA libraries were prepared for sequencing using ABI-SOLID protocols

tag: growth protocol

value: axenic medium

tag: time point


title: ML_H1_96a_F3

source_name: M. leprae_96h_test


title: ML_H2_96a_F3

source_name: M. leprae_96h_test_replicate


title: ML_H1_48a_F3

source_name: M. leprae_48h_test


title: L05_AE07_087_kerosine_100

description:
L05_AE07
Hepatocyte_normcounts.csv

value: iCell Hepatocytes


title: ML_EF2a_F3

source_name: M. leprae_control_insitu_replicate

value: :in situ

value: 0 h


title: L05_AE06_MethodBlank_0

description:
L05_AE06
Hepatocyte_normcounts.csv


title: L05_AE05_065_P_Hwax_100

description:
L05_AE05
Hepatocyte_normcounts.csv

value: WAX


title: breast cancer patient 6

city: Zhengzhou

first: Chong-zhen

last: QIN

address: No. 1 East Jianshe Road, Erqi District, Zhengzhou

country: China

institute: the First Affiliated Hospital of Zhengzhou University

description: breast cancer patient 6

data_processing:
Raw data files in FASTQ format were generated from the Illumina sequencer.  After Illumina quality control, the sequencing reads were 5‘, 3’-adaptor trimmed, and discarded reads (length < 14nt or length > 40nt) with cutadapt , and were recorded in FASTA format.
Trimmed reads in FASTA format are aligned allowing for 1 mismatch only to the mature tRNA sequences,then reads that do not map are aligned allowing for 1 mismatch only to precursor tRNA sequences with bowtie software.The remaining reads are aligned allowing for 1 mismatch only to miRNA reference sequences with miRDeep2.
tRF & tiRNA ID will be divided into four parts by the horizontal line, eg: 'tRF-Gly-TCC-001'. The following is a brief description of these fields:(1) tRF or tiRNA, The type of tRF & tiRNA, eg: tRF; (2) amino acid, Type of amino acid, eg: Gly; (3) anticodon, Type of anticodon, eg: TCC; (4) Serial, The serial number of tRF & tiRNA derived from the tRNA of the same anticodon, eg: 001
The differentially expressed tRFs & tiRNAs and miRNAs are screened based on the count value with R package edgeR. Principal Component Analysis(PCA), Correlation Analysis, Pie plots, Venn plots, Hierarchical clustering, Scatter plots and Volcano plots are performed in R or perl environment for statistical computing and graphics of the expressed tRF & tiRNA.
Genome_build: GtRNAdb, tRFdb

source_name: surgical operation

extract_protocol:
Total RNAs that were extracted from Breast tissue were pretreated with rtStar tRF & tiRNA Pretreatment Kits to remove RNA modifications that interfere with the construction of small RNA-seq libraries.
The cDNA was then synthesized and amplified using Illumina’s proprietary RT primers and amplification primers. Subsequently, 134–160-bp PCR-amplified fragments (corresponding to small RNAs that were each 14–40 nt in length) were extracted and purified from an agarose gel.

tag: tissue

value: Breast tissue

tag: group

value: Disease group


title: ML_EF1a_F3

source_name: M. leprae_control_insitu


title: L05_AE04_141_gasoline_100

description:
L05_AE04
Hepatocyte_normcounts.csv


title: matched non-tumor adjacent tissue 3

description: matched non-tumor adjacent tissue 3

value: Control group


title: L05_AE03_076_gasoline_100

description:
L05_AE03
Hepatocyte_normcounts.csv


title: matched non-tumor adjacent tissue 6

description: matched non-tumor adjacent tissue 6


title: L05_AE09_092_OLBO_100

description:
L05_AE09
Hepatocyte_normcounts.csv

value: BO


title: L05_AD11_050_HFO_100

description:
L05_AD11
Hepatocyte_normcounts.csv

value: HFO


title: L05_AD09_093_petrolatum_100

description:
L05_AD09
Hepatocyte_normcounts.csv


title: matched non-tumor adjacent tissue 4

description: matched non-tumor adjacent tissue 4


title: breast cancer patient 4

description: breast cancer patient 4


title: L05_AD10_089_UDAE_100

description:
L05_AD10
Hepatocyte_normcounts.csv

value: UDAE


title: L05_AE01_169_SRGO_100

description:
L05_AE01
Hepatocyte_normcounts.csv

value: SRGO


title: L05_AD08_103_gasoline_100

description:
L05_AD08
Hepatocyte_normcounts.csv

value: NAPTHA


title: breast cancer patient 5

description: breast cancer patient 5


title: L05_AD07_008_HFO_100

description:
L05_AD07
Hepatocyte_normcounts.csv


title: breast cancer patient 3

description: breast cancer patient 3


title: matched non-tumor adjacent tissue5

description: matched non-tumor adjacent tissue 5


title: L05_AD05_074_OLBO_100

description:
L05_AD05
Hepatocyte_normcounts.csv


title: L05_AD06_MethodBlank_0

description:
L05_AD06
Hepatocyte_normcounts.csv


title: L05_AD01_081_OLBO_100

description:
L05_AD01
Hepatocyte_normcounts.csv


title: esiUSP9X_rep2

city: Dallas

first: Ralf

last: Kittler

state: Texas

address: 5323 Harry Hines Blvd

institute: University of Texas Southwestern Medical Center

description: cancer cells

data_processing:
Sequence reads were aligned to the mouse transcriptome using TopHat.
Cufflinks package was used to quantify transcript levels.
DEG analysis was performed using cuffdiff.
Genome_build: hg19 (GRCh37)
Supplementary_files_format_and_content: A673_esiUSP9X_esiFli1_fpkm_whole_genome.txt: Tab-delimited text file includes whole genome FPKM matrix.

source_name: A673 cells, USP9X knockdown

growth_protocol: A673 cells were cultured in DMEM media with 10% FBS, 100 IU/ml penicillin and 100 µg/ml streptomycin.

extract_protocol:
According to the manufacturer instructions, total RNA was isolated by using Aurum Total RNA Mini Kit from Bio-rad.
TruSeq Stranded Total RNA Ribo-Zero kit (Illumina) was used to prepare sequencing libraries from 2 μg total RNA for sequencing on an Illumina NextSeq500 using 75 nucleotide single end SBS chemistry.

treatment_protocol: A673 cells were transfected with esiGFP RNA, esiFLI1 RNA or esiUSP9X RNA for 72 hours.

tag: cell line

value: Ewing's sarcoma

tag: sirna

value: USP9X esiRNA


title: L05_AB10_083_UATO_100

description:
L05_AB10
Hepatocyte_normcounts.csv

tag: tissue/celltype

value: UATO


title: L05_AB11_063_P_Hwax_100

description:
L05_AB11
Hepatocyte_normcounts.csv

tag: treatment


title: esiFLI1_rep1

description: cancer cells

source_name: A673 cells, EWS-FLI1 knockdown

value: EWS-FLI1 esiRNA


title: esiUSP9X_rep1

description: cancer cells


title: breast cancer patient 1

description: breast cancer patient 1


title: GFP_rep2

description: cancer cells

source_name: A673 cells, NonTargeting control

value: GFP esiRNA


title: GFP_rep1

description: cancer cells


title: L05_AB09_187_1__OGO_100

description:
L05_AB09
Hepatocyte_normcounts.csv

value: iCell Hepatocytes

value: OGO

tag: dose


title: L05_AB08_080_HFO_100

description:
L05_AB08
Hepatocyte_normcounts.csv


title: ZHX3_ChIP-seq rep 1

city: Tokyo

first: Keiko

last: Kan-O

address: Kawadacho 8-1, Shinjuku-ku

department: Department of Respiratory Medicine

country: Japan

institute: Tokyo Women's Medical University

library_source: genomic

data_processing:
Basecalls and conversion to FASTQ files were performed using BaseSpace Onsite (Illumina).
Low quality reads were trimmed out using Trimmmomatic (Galaxy v.0.36.3).
Reads were alignmened onto the human reference genome hg19 using BWA algorithm (Galaxy v.0.7.15.1).
Duplicate reads were trimmed out using Picard MarkDuplicates (Galaxy v.1.136.0).
Genome_build: hg19
Supplementary_files_format_and_content: The bigwig files were generated using deepTools bamCompare (Galaxy v.2.5.0.0).

molecule: genomic DNA

source_name: Growing IMR-90 cells

growth_protocol: IMR-90 cells were cultured in Dulbecco-modified eagle’s medium (DMEM)/F12 supplemented with 10% (v/v) heat-inactivated fetal bovine serum.

extract_protocol:
Crosslinked nuclear extracts were subjected to DNA fragmentation by Bioruptor, and chromatin-DNA complexes were pulled down using specific antibodies.
Libraries were prepared using NEBNext Ultra II DNA Library Prep Kit for Illumina (New England BioLabs) according to the manufacturer's instructions. Briefly, ChIP DNA was end-repaired using an end prep enzyme. After adapter ligation, DNA was PCR amplified with NEB Index primers. The purified DNA was checked for quality on Agilent TapeStation instrument with an Agilent High Sensitivity D1000 kit. The library DNA was approximately 200–400 bp in length. Libraries ware quantified using quantitative real-time PCR with the GenNext NGS Library Quantification Kit (Toyobo). Diluted library DNA was subjected NextSeq sequencers (Illumina) according to the manufacturer's protocols.

value: Human fibroblasts

tag: chip antibody

value: ZHX3 (Abcam, ab9950)


title: ZHX3_ChIP-seq rep 2


title: L05_AB06_MethodBlank_0

description:
L05_AB06
Hepatocyte_normcounts.csv


title: Input_DNA


title: L05_AB07_129_HFO_100

description:
L05_AB07
Hepatocyte_normcounts.csv


title: matched non-tumor adjacent tissue1

description: matched non-tumor adjacent tissue 1

value: Breast tissue


title: L05_AB04_155_HFO_100

description:
L05_AB04
Hepatocyte_normcounts.csv


title: L05_AB05_059_dieselfuel_100

description:
L05_AB05
Hepatocyte_normcounts.csv

value: KER


title: L05_AB03_184_VHGO_100

description:
L05_AB03
Hepatocyte_normcounts.csv

value: VHGO


title: THP1_01

city: Münster

first: Luca

last: Abdel Ghani

address: Corrensstrasse 36

institute: Westfälische Wilhelms-Universität

data_processing:
The sequences were demultiplexed (bcl2fastq2) to fastq data and quality controlled.
Trimmomatic (v. 038) was used for adapter trimming and read filtering. (Parameter: SE -phred33, ILLUMINACLIP:adapters/NEB-SE.fa:2:30:10, LEADING:3 TRAILING:3 MINLEN:15)
The resulted reads were aligned to the hg38 using Hisat2 (v.2.1.0; Parameter: default) and sorted using SAM tools (v. 1.9)
The sorted and aligned reads were counted into genes using HTSeq (v.0.11.1; Parameter: --minaqual 0, --stranded reverse)
Testing for differential expression was performed using DESeq2 r-package (v. 1.22.2)
Genome_build: GRCh38
Supplementary_files_format_and_content: tab-delimited text files

growth_protocol: THP-1 cells were cultured in RPMI 1640 medium containing 10% FBS and 5% L-Glu

extract_protocol:
Total RNA fractions were obtained usind TRIzol reagent
NEBNext Ultra Directional RNA II Library Prep kit was used for the construction of sequencing libraries, which were then sequenced with the Illumina NextSeq 500 System and NextSeq v2 sequencing reagent kit in a single read-mode with a read-length of 75 bp.

treatment_protocol: THP-1 cells were left untreated or treated with 1 µM of 1a for 16 hours

value: acute monocytic leukemia

tag: agent


title: L05_AB01_041_CGO_100

description:
L05_AB01
Hepatocyte_normcounts.csv

value: CGO


title: esiFLI1_rep2

description: cancer cells


title: 1a_02

value: 1 microM 1a

value: 16 hours


title: THP1_03


title: 1a_03


title: L05_AD02_127_slackwax_100

description:
L05_AD02
Hepatocyte_normcounts.csv

value: WAX


title: L05_AA09_082_UATO_100

description:
L05_AA09
Hepatocyte_normcounts.csv


title: L05_AA10_180_VHGO_100

description:
L05_AA10
Hepatocyte_normcounts.csv


title: L05_AA08_006_HFO_100

description:
L05_AA08
Hepatocyte_normcounts.csv

value: HFO


title: L05_AA06_MethodBlank_0

description:
L05_AA06
Hepatocyte_normcounts.csv


title: L05_AA03_043_kerosine_100

description:
L05_AA03
Hepatocyte_normcounts.csv


title: L05_AA05_151_OLBO_100

description:
L05_AA05
Hepatocyte_normcounts.csv

value: BO


title: THP1_02


title: D21 iHeps base-edited with ngcABE-var9

city: Boston

first: Carlos

last: Villacorta-Martin

state: MA

address: 670 Albany St

institute: Center for Regenerative Medicine at Boston University

data_processing:
The sample was processed using the standard Cellranger v.3 pipeline
Reads were mapped to hg19 with TdTomato reporter
Downstream analysis and QC done on Seurat
Differential expression using MAST models
Genome_build: GRCh38
Supplementary_files_format_and_content: 3' RNA-seq single cell read counts in HDF5 format

molecule: polyA RNA

source_name: PiZZ1 human iPSC line

growth_protocol: To derive hepatocytes, iPSCs were first dissociated to single cell supsension and 1x10^6 cells were plated per well of a 6-well tissue culture plate coated with Matrigel for 24 hours in mTeSR media containing ROCK inhibitor (RI) (day 0) prior to differentiation into definitive endoderm differentiation using the Definitive Endoderm Kit (Stem Cell Technologies, 05110) for 4 days (day 1-5).  On day 5, definitive endoderm cells were split 1:9 in a 12-well plate coated with matrigel. All growth factors were diluted in complete serum free differentiation medium (cSFDM) described in Gouon-Evans et al. (2006). Day 5-6 media consisted of cSFDM supplemented with human recombinant BMP4 (0.01 ug/mL), FGF2 (0.01 ug/mL), VEGF (0.01 ug/mL) and activin A (0.05 ug/mL). Day 5 media was also supplemented with RI. On day 7 of the protocol cells were washed with IMDM and media was replaced with cSFDM supplemented with human recombinant BMP4 (0.05 ug/mL), FGF2 (0.01 ug/mL), VEGF (0.01 ug/mL), EGF (0.01 ug/mL), TGF-a (0.02 ug/mL), HGF (0.1 ug/mL) and dexamethasone (0.1 uM). Media was replaced every 2 days from day 7-12. On day 13 of the protocol, cells were washed with IMDM and media was replaced with cSFDM supplemented with human recombinant FGF2 (0.01 ug/mL), VEGF (0.01 ug/mL), EGF (0.01 ug/mL), HGF (0.1 ug/mL), oncostatin M (0.02 ug/mL), Vitamin K (6 ug/mL), dexamethasone (0.1 uM), gamma-secretase inhibitor (1.5 uM) and DMSO (1%).  Media was replaced every 2 days from day 13-18. Cells were base-edited on D15 in media containing RI, then 24 hrs later, media was replaced without RI.  On day 19 of the protocol, cells were washed with IMDM and media was replaced with cSFDM supplemented with human recombinant HGF (0.1 ug/mL), oncostatin M (0.02 ug/mL), vitamin K (6 ug/mL) and dexamethasone (0.1 uM). On day 21 cells were dissociated with trypsin and sorted for live cells using calcein blue, prior to 10X Genomics single cell capture.

extract_protocol: Following cell sorting for live cells, cells were immediately captured and libraries prepared as per the 10x Genomics scRNA-Seq (V3) protocol

treatment_protocol: On day 15 of the protocol, cells were dissociated with trypsin and re-plated 1:1 in a 12-well plate coated with matrigel and immediately transfected with lipofectamine mixed with base editors (ngcABE-var5 or ngcABE-var9 (1800 ng mRNA) and gRNA (600 ng)).

tag: developmental stage

value: day 21 hepatocyte directed differentiation

tag: culture media

value: D19+ media

tag: isolation method

value: Sorted for live cells by sorting


title: D21 ZZ iHeps


title: L04_CH10_172_SRGO_10

description:
L04_CH10
Hepatocyte_normcounts.csv

value: iCell Hepatocytes

value: SRGO


title: L04_CH09_175_VHGO_10

description:
L04_CH09
Hepatocyte_normcounts.csv


title: L04_CH06_MethodBlank_0

description:
L04_CH06
Hepatocyte_normcounts.csv


title: D21 MZ and MM iHeps (stably corrected) mixed at 1:1 ratio


title: L04_CH11_185_RAE_10

description:
L04_CH11
Hepatocyte_normcounts.csv

value: RAE


title: L04_CH05_085C_OLBO_10

description:
L04_CH05
Hepatocyte_normcounts.csv


title: L05_AB02_009_gasoline_100

description:
L05_AB02
Hepatocyte_normcounts.csv

value: NAPTHA


title: Primary CLL sample5 TLR9hi

city: Falmer

first: Andrea

last: Pepper

address: University of Sussex

country: United Kingdom

institute: Brighton and Sussex Medical School

data_processing:
FASTQ files were generated using Illumina bcl2fastq
Reads were aligned to genome using TopHat
Feature counts were generated using featureCounts v1.4.6
Genome_build: GRCh37
Supplementary_files_format_and_content: tab-delimited text files with transcript level count for each sample.

source_name: Primary CLL TLR9hi

growth_protocol: Cells were sorted from primary CLL samples taken from the patient on the day of the experiment.

extract_protocol:
Primary CLL cells were cell sorted and RNA was extracted using an RNeasy mini-prep kit (Qiagen). Total RNA quality and quantity was assessed using an Agilent 2100 Bioanalyser and an RNA Nano 6000 kit (Agilent Technologies). Approximately 100-900ng of Total RNA with an RNA integrity number (RIN) >8 was depleted of ribosomal RNA and used for RNA-seq.
RNA libraries were prepared for sequencing using Illumina TruSeq Stranded mRNA Library Prep Kit
Following validation, the libraries were normalised to 4nM, pooled together and clustered on the cBot™2 following the manufacturer’s recommendations

tag: disease type

value: chronic lymphocytic leukaemia (CLL)

tag: celll type

value: Primary CLL cells

tag: cell population/fraction


title: Primary CLL sample5 TLR9lo

source_name: Primary CLL TLR9lo


title: L04_CH04_149_OLBO_10

description:
L04_CH04
Hepatocyte_normcounts.csv

source_name: Hepatocyte


title: Primary CLL sample4 TLR9hi


title: 1a_01

tag: cell type


title: Primary CLL sample4 TLR9lo


title: L04_CH01_049_kerosine_10

description:
L04_CH01
Hepatocyte_normcounts.csv

value: KER


title: L04_CG11_078_HFO_10

description:
L04_CG11
Hepatocyte_normcounts.csv


title: Primary CLL sample3 TLR9hi


title: Primary CLL sample3 TLR9lo


title: L04_CG10_139_OLBO_10

description:
L04_CG10
Hepatocyte_normcounts.csv


title: D21 iHeps base-edited with ngcABE-var5


title: L05_AA01_016_kerosine_100

description:
L05_AA01
Hepatocyte_normcounts.csv


title: Primary CLL sample2 TLR9hi


title: L04_CH08_084_UATO_10

description:
L04_CH08
Hepatocyte_normcounts.csv

value: UATO


title: L04_CG09_056_gasoline_10

description:
L04_CG09
Hepatocyte_normcounts.csv


title: L04_CG05_183_VHGOa_10

description:
L04_CG05
Hepatocyte_normcounts.csv

value: VHGO


title: L04_CG04_073_OLBO_10

description:
L04_CG04
Hepatocyte_normcounts.csv


title: Primary CLL sample1 TLR9hi


title: L04_CG08_134_HFO_10

description:
L04_CG08
Hepatocyte_normcounts.csv


title: L04_CG03_072_OLBO_10

description:
L04_CG03
Hepatocyte_normcounts.csv


title: Primary CLL sample1 TLR9lo


title: Negative

city: maebashi

first: takahiro

last: yamanaka

address: Showa

institute: Gunma Univ

data_processing:
Sequenced reads were mapped to hg19 using BWA. Unmapped reads are then mapped to hg19 whole genome using HiSAT2 with the parameters set as default, to map the reads that covers at least a part of exon2 as well as exon1.
TSS clustering and tags per million reads (TPM) were calculated using CAGEr (Nucleic Acids Res. 2015 Apr 30;43(8)).
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files include CPM values for each sample

source_name: Cancer associated fibroblasts(CAFs)

growth_protocol: CAFs were seeded in 10-cm dishes and grown to 90% confluency at 37°C in a humidified incubator with 5% CO2.

extract_protocol:
Total RNA was extracted using RNeasy mini kit (Qiagen) according to the manufacturer's instructions
First strand cDNAs were transcribed to the 5’ end of capped RNAs, attached to CAGE "bar code" tags.

treatment_protocol: When CAF were 90% confluency, medium were changed to supplemented not or with 0.3 µg/ml conophylline and incubated for 6 hours 37°C in a humidified incubator with 5% CO2. The cells were collected and washed with PBS, snap-frozen in nitrogen, and stored at −80°C until use.

value: Fibroblasts in hepatocellular carcinoma


title: L04_CH02_069_TDAE_10

description:
L04_CH02
Hepatocyte_normcounts.csv

value: TDAE


title: L04_CG01_109_FO_10

description:
L04_CG01
Hepatocyte_normcounts.csv

value: FO


title: L04_CG02_064_UATO_10

description:
L04_CG02
Hepatocyte_normcounts.csv


title: Conophylline


title: bone marrow cells 36N no curcumin treatment rabbit IgG

first: Xiaoqing

last: Xie

address: Albert-Schweitzer-Campus 1

department: Department of Medicine A

institute: Hematology, Oncology and Pneumology

data_processing:
Trim Galore was used to remove adapters.
ChIP-seq reads were aligned to the mm10 genome assembly using BWA-MEM.
Low-quality reads were removed by Samtools. PCR duplicates were removed using Picard tool.
Peaks were called by MACS2 with default settings.
Peaks located within ENCODE black list regions were removed.
Genome_build: mm10
Supplementary_files_format_and_content: peak text files
Supplementary_files_format_and_content: Bigwig files were generated using bamCoverage

source_name: bone marrow cells

growth_protocol: Nup98-HOXD13 transgenic mice

extract_protocol:
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.
Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit (Part# 0801-0303). Briefly, DNA was end-repaired using a combination of T4 DNA polymerase, E. coli DNA Pol I large fragment (Klenow polymerase) and T4 polynucleotide kinase. The blunt, phosphorylated ends were treated with Klenow fragment (32 to 52 exo minus) and dATP to yield a protruding 3- 'A' base for ligation of Illumina's adapters which have a single 'T' base overhang at the 3’ end. After adapter ligation DNA was PCR amplified with Illumina primers for 15 cycles and library fragments of ~250 bp (insert plus adaptor and PCR primer sequences) were band isolated from an agarose gel. The purified DNA was captured on an Illumina flow cell for cluster generation. Libraries were sequenced on the Illumina HiSeq 2500 following the manufacturer's protocols.

treatment_protocol: mice treated with or without curcumin 20mg/kg curcumin weekly by intraperitoneal (i.p.) injection

value: bone marrow

value: whole bone marrow cells

tag: strain

tag: transgene

value: Nup98-HOXD13 transgenic

tag: genotype

value: no curcumin

value: rabbit IgG


title: bone marrow cells 36S no curcumin treatment input control

tag: tissue


title: L04_CE11_131_HFO_10

description:
L04_CE11
Hepatocyte_normcounts.csv

value: iCell Hepatocytes

value: HFO


title: L04_CF06_MethodBlank_0

description:
L04_CF06
Hepatocyte_normcounts.csv


title: bone marrow cells KD curcumin treatment

value: curcumin


title: L04_CE09_012_CGO_10

description:
L04_CE09
Hepatocyte_normcounts.csv

value: CGO


title: L04_CE10_177_VHGO_10

description:
L04_CE10
Hepatocyte_normcounts.csv


title: bone marrow cells KD no curcumin treatment


title: L04_CE08_066_OLBO_10

description:
L04_CE08
Hepatocyte_normcounts.csv

value: BO


title: bone marrow cells 36S curcumin treatment


title: L04_CE07_007_HFO_10

description:
L04_CE07
Hepatocyte_normcounts.csv


title: bone marrow cells 36N curcumin treatment


title: bone marrow cells 36S no curcumin treatment


title: Primary CLL sample2 TLR9lo

value: chronic lymphocytic leukaemia (CLL)

value: Primary CLL cells


title: L04_CE05_173_OGO_10

description:
L04_CE05
Hepatocyte_normcounts.csv

value: OGO


title: bone marrow cells 36N no curcumin treatment


title: L04_CE06_MethodBlank_0

description:
L04_CE06
Hepatocyte_normcounts.csv


title: L04_CE04_097_HFO_10

description:
L04_CE04
Hepatocyte_normcounts.csv


title: L04_CE03_113_OLBO_10

description:
L04_CE03
Hepatocyte_normcounts.csv


title: L04_CE02_192_BITUMENS_10

description:
L04_CE02
Hepatocyte_normcounts.csv

value: BIT


title: L04_CE01_111_petrolatum_10

description:
L04_CE01
Hepatocyte_normcounts.csv


title: L04_CD12_034_HFO_10

description:
L04_CD12
Hepatocyte_normcounts.csv


title: mmusculus_P6

city: Uppsala

first: Henrik

last: Boije

address: Uppsala University, Dept. Of Neuroscience, Box 593, BMC

country: Sweden

institute: Uppsala University

description: mmusculus.loom

data_processing:
Alignment and mapping: Genome indexing and read alignment was performed using STAR v.2.5.4b and Velocyto v0.17.17 (La Manno et al., 2018). Fasta files for extra genes were manually added for eGFP 146 (LC337138.1), tdTomato (GeneBank: AY678269.1) and ERCC genes (Thermofisher assets: https://assets.thermofisher.com/TFS-Assets/LSG/manuals/ERCC92.zip) and gene information was added to the species GTF file (Shaner et al., 2004; Nakajima et al., 2018). Reads were mapped to GRCm38.99 genome for mus musculus or GRCz11.98 genome for danio rerio. Genes were counted using featureCounts (subread V2.0.0) and Velocyto v0.17.17. Velocyto spliced and unspliced information was added to the final loom file as seperate layers. Full scripts are deposited at Github (http://github.com/jonetjakobsson/dmrt3-single-cell)
Genome_build: GRCm38.99
Genome_build: GRCz11.98
Supplementary_files_format_and_content: Loom file containing layers; reads, RPKM, spliced and unspliced meassures. Each row represents a well and each column represents one gene.

source_name: Mouse spinal cord

extract_protocol:
For zebrafish, cells were collected 3 days post fertilization. The head and tail were removed and the middle part of the larvae was collected for sequencing. The yolk was removed by gently pipetting up and down in 100 μL of calcium-free Ringer’s solution. Larvae (n=20) were transferred to a protease solution (0.25% trypsin, 1mM EDTA, pH 8.0, PBS, 50 ml) pre-warmed at 28°C and 27 μL collagenase P in HBSS was added to the samples for 15 minutes at 28°C with homogenizing every 5 minutes by gently pipetting up and down. Stop solution (6X, 30% calf serum, 6 mM CaCl2, PBS) was added to the tube and spun at 350 RCF for 5 minutes at 4°C. The resuspension was passed through a 20 μm cell strainer and the sample was placed on ice. Quality control was addressed by comparing live cells versus dead cells using a viability indicator for dead cells (NucRed™ Dead 647 ReadyProbes™ Reagent). For mice, the spinal cords from three E14.5 embryos were dissected in ice-cold 1X D-PBS (Thermofisher). Both the DRGs and vertebrae column were removed as much as possible. The spinal cords were pooled in one tube and dissociated using the adult brain dissociation kit (Milteny Biotec), adapted for spinal cord tissue. Briefly, 1 ml pre-heated (37ºC) enzyme solution 1 (50 µl enzyme P in 950ul buffer Z) was added to the spinal cords followed by 15ul enzyme solution 2 (5 µl enzyme A in 10 µl buffer Y). The tissue was incubated at 37ºC for 30 minutes. Every 10 minutes, the tissue was triturated 10 times with fire polished glass Pasteur pipettes pretreated in 0.5% BSA in 1X D-PBS. The pipets had a decreasing diameter staring with around 200% then 100% and finally around 20% of original opening diameter. Tissue was then transferred to 10 ml ice cold 1X D-PBS and filtered through a 40 µm cell strainer. The suspension was centrifuged at 300 RCF for 10 minutes at 4ºC and the supernatant was discarded. The cell pellet was resuspended in 900 µl 0.5% BSA in 1X D-PBS followed by 100 µl myelin removal beads (Milteny Biotec) and incubated for 15 min at 8ºC. 10 ml ice cold 1X D-PBS was added to the sample and centrifuged at 300 RCF for 10 minutes. Supernatant was discarded and the cell pellet was resuspended in 1 ml 0.5% BSA in 1X D-PBS. The sample was run through an LS-column (Milteny Biotec) on a magnetic stand and flushed with 2x1 ml 0.5% BSA in 1X D-PBS. Cell sorting was performed on a BD Melody cell sorter, and tomato positive cells were gated out in comparison to a non-fluorescent control.
cDNA synthesis and preamplification were performed using the SMART-seq2 method (Picelli et al., 2014). Briefly, cDNA was transcribed using SuperScript II reverse transcriptase, oligo(dT) primers and template switching oligonucleotides (TSO). Preamplification of the cDNA was facilitated by ISPCR primers that binds the TSO and oligo(dT). The cDNA was tagmented using the Tn5 transposase creating fragments of 200-600bp, followed by indexation using the Nextera XT sample preparation kits.

value: spinal cord


title: mmusculus_P8

description: mmusculus.loom


title: L04_CD10_031_HFO_10

description:
L04_CD10
Hepatocyte_normcounts.csv


title: mmusculus_P9

description: mmusculus.loom


title: mmusculus_P7

description: mmusculus.loom


title: mmusculus_P4

description: mmusculus.loom


title: mmusculus_P23

description: mmusculus.loom


title: L04_CD11_189_BITUMEN_10

description:
L04_CD11
Hepatocyte_normcounts.csv


title: L04_CD09_176_VHGO_10

description:
L04_CD09
Hepatocyte_normcounts.csv

value: VHGO


title: mmusculus_P3

description: mmusculus.loom


title: mmusculus_P24

description: mmusculus.loom


title: mmusculus_P22

description: mmusculus.loom


title: mmusculus_P21

description: mmusculus.loom


title: L04_CD05_112_OLBO_10

description:
L04_CD05
Hepatocyte_normcounts.csv


title: L04_CD06_MethodBlank_0

description:
L04_CD06
Hepatocyte_normcounts.csv


title: L04_CD07_024_HFO_10

description:
L04_CD07
Hepatocyte_normcounts.csv


title: L04_CD03_174_OGO_10

description:
L04_CD03
Hepatocyte_normcounts.csv


title: mmusculus_P2

description: mmusculus.loom


title: mmusculus_P20

description: mmusculus.loom


title: L04_CD04_137_OLBO_10

description:
L04_CD04
Hepatocyte_normcounts.csv


title: mmusculus_P5

description: mmusculus.loom


title: mmusculus_P18

description: mmusculus.loom


title: L04_CD01_003_CGO_10

description:
L04_CD01
Hepatocyte_normcounts.csv


title: mmusculus_P17

description: mmusculus.loom


title: mmusculus_P16

description: mmusculus.loom


title: L04_CC06_MethodBlank_0

description:
L04_CC06
Hepatocyte_normcounts.csv


title: L04_CC10_188_SRGO_10

description:
L04_CC10
Hepatocyte_normcounts.csv

value: SRGO


title: mmusculus_P14

description: mmusculus.loom


title: L04_CC01_092_OLBO_10

description:
L04_CC01
Hepatocyte_normcounts.csv


title: L04_CC03_120_gasoline_10

description:
L04_CC03
Hepatocyte_normcounts.csv

value: NAPTHA


title: L04_CC05_134_HFO_10

description:
L04_CC05
Hepatocyte_normcounts.csv


title: mmusculus_P11

description: mmusculus.loom


title: mmusculus_P13

description: mmusculus.loom


title: mmusculus_P19

description: mmusculus.loom


title: mmusculus_P10

description: mmusculus.loom


title: L04_CC08_175_VHGO_10

description:
L04_CC08
Hepatocyte_normcounts.csv


title: mmusculus_P1

description: mmusculus.loom


title: mmusculus_P12

description: mmusculus.loom


title: L04_CB07_168_SRGO_10

description:
L04_CB07
Hepatocyte_normcounts.csv


title: L04_CD02_020_HFO_10

description:
L04_CD02
Hepatocyte_normcounts.csv


title: mmusculus_O8

description: mmusculus.loom


title: L04_CB10_171_SRGO_10

description:
L04_CB10
Hepatocyte_normcounts.csv


title: L04_CB06_MethodBlank_0

description:
L04_CB06
Hepatocyte_normcounts.csv


title: mmusculus_O9

description: mmusculus.loom


title: L04_CB08_146_gasoline_10

description:
L04_CB08
Hepatocyte_normcounts.csv


title: mmusculus_O6

description: mmusculus.loom


title: mmusculus_O7

description: mmusculus.loom


title: L04_CB05_061_P_Hwax_10

description:
L04_CB05
Hepatocyte_normcounts.csv

value: WAX


title: mmusculus_O5

description: mmusculus.loom


title: mmusculus_P15

description: mmusculus.loom


title: L04_CB04_117_OLBO_10

description:
L04_CB04
Hepatocyte_normcounts.csv


title: mmusculus_O4

description: mmusculus.loom


title: L04_CB11_186_RAE_10

description:
L04_CB11
Hepatocyte_normcounts.csv

value: RAE


title: L04_CB03_147_OLBO_10

description:
L04_CB03
Hepatocyte_normcounts.csv


title: L04_CB02_011_kerosine_10

description:
L04_CB02
Hepatocyte_normcounts.csv

value: KER


title: mmusculus_O23

description: mmusculus.loom


title: L04_CA11_028_HFO_10

description:
L04_CA11
Hepatocyte_normcounts.csv


title: L04_CA08_025_HFO_10

description:
L04_CA08
Hepatocyte_normcounts.csv


title: L04_CA07_018_HFO_10

description:
L04_CA07
Hepatocyte_normcounts.csv


title: L04_CA06_MethodBlank_0

description:
L04_CA06
Hepatocyte_normcounts.csv


title: mmusculus_O3

description: mmusculus.loom


title: L04_CA04_086_kerosine_10

description:
L04_CA04
Hepatocyte_normcounts.csv


title: mmusculus_O20

description: mmusculus.loom


title: mmusculus_O2

description: mmusculus.loom


title: mmusculus_O18

description: mmusculus.loom


title: mmusculus_O22

description: mmusculus.loom


title: mmusculus_O19

description: mmusculus.loom


title: mmusculus_O21

description: mmusculus.loom


title: L04_CA05_138_OLBO_10

description:
L04_CA05
Hepatocyte_normcounts.csv


title: L04_CA03_062_P_Hwax_10

description:
L04_CA03
Hepatocyte_normcounts.csv


title: L04_CA02_160_FO_10

description:
L04_CA02
Hepatocyte_normcounts.csv

value: FO


title: mmusculus_O16

description: mmusculus.loom


title: L04_CA01_046_gasoline_10

description:
L04_CA01
Hepatocyte_normcounts.csv

value: iCell Hepatocytes


title: L04_BH06_MethodBlank_0

description:
L04_BH06
Hepatocyte_normcounts.csv


title: L04_BG10_123_kerosine_10

description:
L04_BG10
Hepatocyte_normcounts.csv


title: L04_BG11_058_HFO_10

description:
L04_BG11
Hepatocyte_normcounts.csv

value: HFO


title: mmusculus_O15

description: mmusculus.loom


title: mmusculus_O13

description: mmusculus.loom


title: L04_BG09_170_SRGO_10

description:
L04_BG09
Hepatocyte_normcounts.csv


title: mmusculus_O14

description: mmusculus.loom


title: mmusculus_O11

description: mmusculus.loom


title: mmusculus_O10

description: mmusculus.loom


title: L04_BG08_102_CGO_10

description:
L04_BG08
Hepatocyte_normcounts.csv


title: mmusculus_O12

description: mmusculus.loom


title: L04_CB01_152_slackwax_10

description:
L04_CB01
Hepatocyte_normcounts.csv


title: mmusculus_O24

description: mmusculus.loom


title: L04_CA10_085D_OLBO_10

description:
L04_CA10
Hepatocyte_normcounts.csv


title: L04_BG06_MethodBlank_0

description:
L04_BG06
Hepatocyte_normcounts.csv


title: mmusculus_N9

description: mmusculus.loom


title: mmusculus_O1

description: mmusculus.loom


title: L04_BG04_106_CGO_10

description:
L04_BG04
Hepatocyte_normcounts.csv


title: mmusculus_N8

description: mmusculus.loom


title: mmusculus_N7

description: mmusculus.loom


title: L04_BG03_153_OLBO_10

description:
L04_BG03
Hepatocyte_normcounts.csv


title: L04_BG01_121_CGO_10

description:
L04_BG01
Hepatocyte_normcounts.csv


title: L04_BG02_202_Paraffinwax_10

description:
L04_BG02
Hepatocyte_normcounts.csv


title: mmusculus_N5

description: mmusculus.loom


title: mmusculus_O17

description: mmusculus.loom


title: L04_BF10_070_CGO_10

description:
L04_BF10
Hepatocyte_normcounts.csv


title: mmusculus_N3

description: mmusculus.loom


title: L04_BF09_096B_UDAE_10

description:
L04_BF09
Hepatocyte_normcounts.csv

value: UDAE


title: mmusculus_N24

description: mmusculus.loom


title: L04_BF08_148_OLBO_10

description:
L04_BF08
Hepatocyte_normcounts.csv


title: L04_BF07_114_OLBO_10

description:
L04_BF07
Hepatocyte_normcounts.csv


title: mmusculus_N23

description: mmusculus.loom


title: L04_BF06_MethodBlank_0

description:
L04_BF06
Hepatocyte_normcounts.csv


title: L04_BF05_196_petrolatum_10

description:
L04_BF05
Hepatocyte_normcounts.csv


title: L04_BF04_197_HFO_10

description:
L04_BF04
Hepatocyte_normcounts.csv


title: mmusculus_N22

description: mmusculus.loom


title: mmusculus_N20

description: mmusculus.loom


title: mmusculus_N21

description: mmusculus.loom


title: mmusculus_N19

description: mmusculus.loom


title: L04_BF03_178_VHGO_10

description:
L04_BF03
Hepatocyte_normcounts.csv


title: mmusculus_N2

description: mmusculus.loom


title: mmusculus_N6

description: mmusculus.loom


title: L04_BF02_132_gasoline_10

description:
L04_BF02
Hepatocyte_normcounts.csv


title: L04_BE10_188_SRGO_1

description:
L04_BE10
Hepatocyte_normcounts.csv


title: L04_BE09_175_VHGO_100

description:
L04_BE09
Hepatocyte_normcounts.csv


title: L04_BE08_175_VHGO_1

description:
L04_BE08
Hepatocyte_normcounts.csv


title: L04_BE07_134_HFO_100

description:
L04_BE07
Hepatocyte_normcounts.csv


title: mmusculus_N4

description: mmusculus.loom


title: mmusculus_N15

description: mmusculus.loom


title: mmusculus_N14

description: mmusculus.loom


title: L04_BE05_134_HFO_1

description:
L04_BE05
Hepatocyte_normcounts.csv


title: mmusculus_N12

description: mmusculus.loom


title: mmusculus_N13

description: mmusculus.loom


title: L04_BE06_MethodBlank_0

description:
L04_BE06
Hepatocyte_normcounts.csv


title: mmusculus_N11

description: mmusculus.loom


title: L04_BE04_120_gasoline_100

description:
L04_BE04
Hepatocyte_normcounts.csv


title: L04_BE03_120_gasoline_1

description:
L04_BE03
Hepatocyte_normcounts.csv


title: mmusculus_N10

description: mmusculus.loom


title: mmusculus_N1

description: mmusculus.loom


title: L04_BE02_092_OLBO_100

description:
L04_BE02
Hepatocyte_normcounts.csv


title: L04_BE01_092_OLBO_1

description:
L04_BE01
Hepatocyte_normcounts.csv


title: L04_BF01_075_OLBO_10

description:
L04_BF01
Hepatocyte_normcounts.csv


title: L04_BD06_MethodBlank_0

description:
L04_BD06
Hepatocyte_normcounts.csv


title: mmusculus_N16

description: mmusculus.loom


title: mmusculus_M8

description: mmusculus.loom


title: mmusculus_N18

description: mmusculus.loom


title: mmusculus_N17

description: mmusculus.loom


title: mmusculus_M7

description: mmusculus.loom


title: L04_BE11_188_SRGO_100

description:
L04_BE11
Hepatocyte_normcounts.csv


title: mmusculus_M6

description: mmusculus.loom


title: L04_BD04_177_VHGO_10

description:
L04_BD04
Hepatocyte_normcounts.csv


title: mmusculus_M5

description: mmusculus.loom


title: L04_BD03_020_HFO_10

description:
L04_BD03
Hepatocyte_normcounts.csv


title: L04_BD02_091_HFO_10

description:
L04_BD02
Hepatocyte_normcounts.csv


title: mmusculus_M4

description: mmusculus.loom


title: L04_BD05_168_SRGO_10

description:
L04_BD05
Hepatocyte_normcounts.csv


title: mmusculus_M3

description: mmusculus.loom


title: L04_BD01_184_VHGO_10

description:
L04_BD01
Hepatocyte_normcounts.csv


title: mmusculus_M24

description: mmusculus.loom


title: mmusculus_M9

description: mmusculus.loom


title: L04_BC11_193_OXASPH_10

description:
L04_BC11
Hepatocyte_normcounts.csv


title: mmusculus_M22

description: mmusculus.loom


title: mmusculus_M21

description: mmusculus.loom


title: L04_BC10_182_VHGO_10

description:
L04_BC10
Hepatocyte_normcounts.csv


title: L04_BC09_120_gasoline_10

description:
L04_BC09
Hepatocyte_normcounts.csv


title: L04_BC08_130_CGO_10

description:
L04_BC08
Hepatocyte_normcounts.csv

value: CGO


title: L04_BC07_150_OLBO_10

description:
L04_BC07
Hepatocyte_normcounts.csv

value: BO


title: mmusculus_M20

description: mmusculus.loom


title: L04_BC06_MethodBlank_0

description:
L04_BC06
Hepatocyte_normcounts.csv


title: mmusculus_M19

description: mmusculus.loom


title: mmusculus_M2

description: mmusculus.loom


title: L04_BC05_140_OLBO_10

description:
L04_BC05
Hepatocyte_normcounts.csv


title: mmusculus_M18

description: mmusculus.loom


title: L04_BC02_145_HRBO_10

description:
L04_BC02
Hepatocyte_normcounts.csv


title: mmusculus_M16

description: mmusculus.loom


title: mmusculus_M15

description: mmusculus.loom


title: mmusculus_M17

description: mmusculus.loom


title: L04_BB11_115_OLBO_10

description:
L04_BB11
Hepatocyte_normcounts.csv


title: mmusculus_M14

description: mmusculus.loom


title: L04_BC01_179_VHGO_10

description:
L04_BC01
Hepatocyte_normcounts.csv


title: L04_BB10_085B_OLBO_10

description:
L04_BB10
Hepatocyte_normcounts.csv


title: mmusculus_M12

description: mmusculus.loom


title: mmusculus_M11

description: mmusculus.loom


title: L04_BB06_MethodBlank_0

description:
L04_BB06
Hepatocyte_normcounts.csv


title: L04_BB07_166_HFO_10

description:
L04_BB07
Hepatocyte_normcounts.csv


title: mmusculus_M10

description: mmusculus.loom


title: mmusculus_M1

description: mmusculus.loom


title: L04_BB05_091_HFO_10

description:
L04_BB05
Hepatocyte_normcounts.csv


title: mmusculus_L9

description: mmusculus.loom


title: L04_BB03_188_SRGO_10

description:
L04_BB03
Hepatocyte_normcounts.csv


title: L04_BB01_154_OLBO_10

description:
L04_BB01
Hepatocyte_normcounts.csv


title: L04_BB08_071_HFO_10

description:
L04_BB08
Hepatocyte_normcounts.csv


title: L04_BA06_MethodBlank_0

description:
L04_BA06
Hepatocyte_normcounts.csv


title: L04_BC04_036_OLBO_10

description:
L04_BC04
Hepatocyte_normcounts.csv


title: L04_AH11_090_FO_10

description:
L04_AH11
Hepatocyte_normcounts.csv


title: mmusculus_M23

description: mmusculus.loom


title: mmusculus_L6

description: mmusculus.loom


title: mmusculus_L5

description: mmusculus.loom


title: L04_AH10_067_P_Hwax_10

description:
L04_AH10
Hepatocyte_normcounts.csv


title: mmusculus_L4

description: mmusculus.loom


title: mmusculus_L8

description: mmusculus.loom


title: mmusculus_M13

description: mmusculus.loom


title: mmusculus_L7

description: mmusculus.loom


title: mmusculus_L3

description: mmusculus.loom


title: L04_AH09_079_HFO_10

description:
L04_AH09
Hepatocyte_normcounts.csv


title: L04_AH07_021_HFO_10

description:
L04_AH07
Hepatocyte_normcounts.csv


title: L04_AH06_MethodBlank_0

description:
L04_AH06
Hepatocyte_normcounts.csv


title: L04_BB09_190_BITUMENS_10

description:
L04_BB09
Hepatocyte_normcounts.csv


title: mmusculus_L24

description: mmusculus.loom


title: mmusculus_L23

description: mmusculus.loom


title: L04_AH04_128_kerosine_10

description:
L04_AH04
Hepatocyte_normcounts.csv


title: mmusculus_L22

description: mmusculus.loom


title: mmusculus_L21

description: mmusculus.loom


title: L04_AH02_119_OLBO_10

description:
L04_AH02
Hepatocyte_normcounts.csv


title: L04_AH03_060_OLBO_10

description:
L04_AH03
Hepatocyte_normcounts.csv


title: L04_AH01_195_UDAE_10

description:
L04_AH01
Hepatocyte_normcounts.csv


title: mmusculus_L2

description: mmusculus.loom


title: mmusculus_L20

description: mmusculus.loom


title: L04_AG11_191_BITUMEN_10

description:
L04_AG11
Hepatocyte_normcounts.csv


title: mmusculus_L19

description: mmusculus.loom


title: mmusculus_L18

description: mmusculus.loom


title: mmusculus_L17

description: mmusculus.loom


title: L04_AG10_164_HFO_10

description:
L04_AG10
Hepatocyte_normcounts.csv


title: L04_AG09_104_kerosine_10

description:
L04_AG09
Hepatocyte_normcounts.csv


title: L04_AG08_108_OLBO_10

description:
L04_AG08
Hepatocyte_normcounts.csv


title: mmusculus_L16

description: mmusculus.loom


title: mmusculus_L15

description: mmusculus.loom


title: L04_AG06_MethodBlank_0

description:
L04_AG06
Hepatocyte_normcounts.csv


title: L04_AG05_135_TDAE_10

description:
L04_AG05
Hepatocyte_normcounts.csv

value: TDAE


title: L04_AG04_181_VHGO_10

description:
L04_AG04
Hepatocyte_normcounts.csv


title: L04_AG07_136_slackwax_10

description:
L04_AG07
Hepatocyte_normcounts.csv


title: L04_AG02_187_2__OGO_10

description:
L04_AG02
Hepatocyte_normcounts.csv


title: mmusculus_L12

description: mmusculus.loom


title: mmusculus_L14

description: mmusculus.loom


title: mmusculus_L13

description: mmusculus.loom


title: L04_AH05_096A_UDAE_10

description:
L04_AH05
Hepatocyte_normcounts.csv


title: mmusculus_L10

description: mmusculus.loom


title: mmusculus_L11

description: mmusculus.loom


title: L04_AG01_118_OLBO_10

description:
L04_AG01
Hepatocyte_normcounts.csv


title: mmusculus_L1

description: mmusculus.loom


title: mmusculus_K9

description: mmusculus.loom


title: L04_AF05_183_VHGOa_10

description:
L04_AF05
Hepatocyte_normcounts.csv


title: L04_AF06_MethodBlank_0

description:
L04_AF06
Hepatocyte_normcounts.csv


title: mmusculus_K7

description: mmusculus.loom


title: L04_AF03_076_gasoline_10

description:
L04_AF03
Hepatocyte_normcounts.csv


title: mmusculus_K6

description: mmusculus.loom


title: L04_AF02_083_UATO_10

description:
L04_AF02
Hepatocyte_normcounts.csv

value: UATO


title: mmusculus_K5

description: mmusculus.loom


title: L04_AF01_043_kerosine_10

description:
L04_AF01
Hepatocyte_normcounts.csv


title: mmusculus_K3

description: mmusculus.loom


title: mmusculus_K4

description: mmusculus.loom


title: L04_AE10_085A_OLBO_10

description:
L04_AE10
Hepatocyte_normcounts.csv


title: L04_AE09_092_OLBO_10

description:
L04_AE09
Hepatocyte_normcounts.csv


title: L04_AE11_124_gasoline_10

description:
L04_AE11
Hepatocyte_normcounts.csv


title: L04_AG03_017_HFO_10

description:
L04_AG03
Hepatocyte_normcounts.csv


title: mmusculus_K23

description: mmusculus.loom


title: L04_AE08_107_P_Hwax_10

description:
L04_AE08
Hepatocyte_normcounts.csv


title: mmusculus_K24

description: mmusculus.loom