title: WholeBlood_CRC305D2GENT015401_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT015401 on day 1


title: WholeBlood_CRC305D2GENT016402_Day28

status: Public on Jan 07 2022

type: RNA

city: London

first: David

last: Lewis

address: Du Cane Road

department: ICRF

country: United Kingdom

institute: Imperial College London

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT016402 on day 28

hyb_protocol: 600 ng of Cy3-labelled cRNA (specific activity >10.0 pmol Cy3/ug cRNA) was fragmented and hybridized to custom whole genome human 8 × 60K multipack microarrays (Agilent-048908) following the manufacturers instructions. After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37°C GE Wash buffer 2 (Agilent) according the manufacturers protocol.

scan_protocol: Slides were scanned immediately after washing using a high resolution DNA Microarray Scanner (G2505B, Agilent Technologies) with 3 µm resoltion and 20 bit image depth

data_processing: The scanned microarray images were processed with the Image Analysis/Feature Extraction software G2567AA v. A.11.5.1.1 (Agilent Technologies) using default settings and the GE1_1105_Oct12 extraction protocol.

molecule: total RNA

organism: Homo sapiens

source_name: Peripheral Blood, PaxGene

label_protocol: Total RNA was amplified and labeled with the low input Quick-Amp Labelling Kit (Agilent Technologies) with cyanine 3-CTP followed by precipitation, purification, and quantification.

extract_protocol: mRNA was reverse transcribed and amplified using an oligo-dT-T7 promoter primer

treatment_protocol: Microarray experiments were performed as single-color hybridization. Cyanine-3 (Cy3) labeled cRNA was prepared from 100 ng total RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).  Dye incorporation and cRNA yield were checked with the NanoDrop ND-1000 Spectrophotometer.

tag: tissue

value: whole blood

tag: protocol

tag: treatment

value: BOOSTRIX

tag: day

tag: participant

tag: gender

value: male

tag: age

tag: race

value: white

tag: ethnicity

value: not hispanic or latino

tag: recent boostrix


title: T_4T1_PD1_DX400_2dose_8d_3

type: SRA

city: Boston

first: Eric

last: Muise

state: MA

address: 33 Ave. Louis Pasteur

department: GPGX

country: USA

institute: Merck

library_source: transcriptomic

data_processing:
Cleaned reads were aligned to the Mouse.B38 genome reference using the Omicsoft Aligner (Qiagen, Germantown, MD) with a maximum of 2 allowed mismatches.
Gene level raw counts, and FPKM, were determined by the OSA algorithm as implemented in Omicsoft Array Studio (version 10.0.1.118) and using Ensembl.R93 gene models.
Genome_build: Mouse.B38
Supplementary_files_format_and_content: Tab-delimited text file include FPKM values for each Sample. Each column corresponds to one sample (barcode).

organism: Mus musculus

source_name: Tumor

growth_protocol: Each mouse was anesthetized and inoculated subcutaneously into the right lower flank with a single-cell suspension of ≥95% viable cells in 0.1 mL of serum-free DMEM or RPMI-1640 medium. Mice were checked daily for signs of notable clinical observations.

extract_protocol:
For tumor tissue RNA isolation, organs were homogenized into RNA STAT-60 (Tel-Test Inc., Friendswood, TX) using a polytron homogenizer, then total RNA extracted according to the manufacturer's instructions. After isopropanol precipitation, total RNA was re-extracted with phenol:chloroform:isoamyl alcohol (25:24:1) (Sigma-Aldrich, St. Louis, MO) using phase-lock light tubes (Thermo Fisher Scientific, Foster City, CA).
RNA sequencing was performed using the Truseq stranded total RNA RiboZero library preparation kit (Catalog #: RS-122-2201) according to the manufacturer’s instructions (Illumina, San Diego, CA). The resulting cDNA libraries were sequenced on Illumina HiSeqTM 4000 using a 50 base paired-end run.

treatment_protocol: Tumor-bearing mice received muDX400, or muIgG1 isotype control, antibody injection at day 11 and day 15 post-tumor implant. Subsequently, on day 19 (“8d”) tumors were excised and snap frozen in liquid nitrogen and stored at –80°C until RNA isolation.

tag: replicate group

tag: cell line

value: Resistant

tag: time point


title: T_MB49_Iso_mIgG1_2dose_8d_4

value: isotype control mIgG1

value: Partial


title: WholeBlood_CRC305D2GENT013802_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT013802 on day 28

value: female


title: WholeBlood_CRC305D2GENT232630_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT232630 on day 28


title: WholeBlood_CRC305D2GENT043707_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT043707 on day 1


title: T_MB49_Iso_mIgG1_2dose_8d_5


title: WholeBlood_CRC305D2GENT054105_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT054105 on day 1


title: WholeBlood_CRC305D2GENT048104_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT048104 on day 28


title: WholeBlood_CRC305D2GENT243326_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT243326 on day 28


title: T_MBT2_PD1_DX400_2dose_8d_4

value: High


title: T_CT26_PD1_DX400_2dose_8d_2


title: T_4T1_Iso_mIgG1_2dose_8d_3


title: WholeBlood_CRC305D2GENT006302_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT006302 on day 1


title: T_CM3_Iso_mIgG1_2dose_8d_5


title: WholeBlood_CRC305D2GENT029704_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT029704 on day 28


title: WholeBlood_CRC305D2GENT015401_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT015401 on day 28


title: WholeBlood_CRC305D2GENT200629_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT200629 on day 28


title: WholeBlood_CRC305D2GENT056103_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT056103 on day 28


title: T_MBT2_Iso_mIgG1_2dose_8d_2


title: WholeBlood_CRC305D2GENT242829_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT242829 on day 7


title: WholeBlood_CRC305D2GENT202229_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT202229 on day 28


title: T_CT26_Iso_mIgG1_2dose_8d_2


title: T_CT26_PD1_DX400_2dose_8d_5


title: T_MBT2_PD1_DX400_2dose_8d_2


title: WholeBlood_CRC305D2GENT249622_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT249622 on day 28


title: WholeBlood_CRC305D2GENT203127_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT203127 on day 28


title: T_MBT2_PD1_DX400_2dose_8d_3


title: T_CT26_Iso_mIgG1_2dose_8d_1


title: T_CM3_Iso_mIgG1_2dose_8d_1


title: WholeBlood_CRC305D2GENT219230_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT219230 on day 28


title: T_CM3_PD1_DX400_2dose_8d_4


title: T_MB49_Iso_mIgG1_2dose_8d_3


title: T_MB49_Iso_mIgG1_2dose_8d_1


title: T_MBT2_Iso_mIgG1_2dose_8d_4


title: WholeBlood_CRC305D2GENT147122_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT147122 on day 28


title: T_MB49_PD1_DX400_2dose_8d_5


title: WholeBlood_CRC305D2GENT151320_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT151320 on day 28


title: T_CM3_PD1_DX400_2dose_8d_5


title: T_CM3_PD1_DX400_2dose_8d_1


title: WholeBlood_CRC305D2GENT227727_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT227727 on day 3


title: WholeBlood_CRC305D2GENT177621_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT177621 on day 28


title: WholeBlood_CRC305D2GENT247730_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT247730 on day 7


title: T_4T1_Iso_mIgG1_2dose_8d_1


title: T_CM3_PD1_DX400_2dose_8d_2


title: T_CM3_Iso_mIgG1_2dose_8d_2


title: T_4T1_Iso_mIgG1_2dose_8d_2


title: WholeBlood_CRC305D2GENT172519_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT172519 on day 28


title: WholeBlood_CRC305D2GENT204126_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT204126 on day 28


title: WholeBlood_CRC305D2GENT211319_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT211319 on day 28


title: T_MB49_Iso_mIgG1_2dose_8d_2


title: T_MBT2_Iso_mIgG1_2dose_8d_5


title: T_4T1_PD1_DX400_2dose_8d_4


title: T_4T1_PD1_DX400_2dose_8d_5


title: T_MBT2_PD1_DX400_2dose_8d_1


title: T_CT26_PD1_DX400_2dose_8d_4


title: WholeBlood_CRC305D2GENT201228_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT201228 on day 28


title: WholeBlood_CRC305D2GENT144121_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT144121 on day 28


title: WholeBlood_CRC305D2GENT248518_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT248518 on day 28


title: WholeBlood_CRC305D2GENT185620_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT185620 on day 28


title: WholeBlood_CRC305D2GENT246830_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT246830 on day 3


title: WholeBlood_CRC305D2GENT233828_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT233828 on day 28


title: WholeBlood_CRC305D2GENT138318_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT138318 on day 28


title: WholeBlood_CRC305D2GENT188823_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT188823 on day 28


title: T_MBT2_Iso_mIgG1_2dose_8d_3


title: WholeBlood_CRC305D2GENT225726_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT225726 on day 3


title: WholeBlood_CRC305D2GENT186227_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT186227 on day 28


title: WholeBlood_CRC305D2GENT148517_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT148517 on day 28


title: T_4T1_Iso_mIgG1_2dose_8d_5


title: WholeBlood_CRC305D2GENT197226_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT197226 on day 28


title: T_MBT2_PD1_DX400_2dose_8d_5


title: WholeBlood_CRC305D2GENT239827_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT239827 on day 28


title: T_MB49_PD1_DX400_2dose_8d_4


title: WholeBlood_CRC305D2GENT228725_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT228725 on day 3


title: WholeBlood_CRC305D2GENT195530_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT195530 on day 28


title: T_4T1_PD1_DX400_2dose_8d_1


title: T_MB49_PD1_DX400_2dose_8d_2


title: T_CT26_PD1_DX400_2dose_8d_3


title: T_CM3_Iso_mIgG1_2dose_8d_3


title: T_CM3_PD1_DX400_2dose_8d_3


title: T_MB49_PD1_DX400_2dose_8d_1


title: T_MBT2_Iso_mIgG1_2dose_8d_1


title: T_MB49_PD1_DX400_2dose_8d_3


title: T_B16F10_PD1_DX400_2dose_8d_5


title: WholeBlood_CRC305D2GENT183822_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT183822 on day 28


title: WholeBlood_CRC305D2GENT150317_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT150317 on day 28


title: WholeBlood_CRC305D2GENT226724_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT226724 on day 3


title: T_RENCA_PD1_DX400_2dose_8d_2

value: RENCA


title: WholeBlood_CRC305D2GENT145516_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT145516 on day 28


title: WholeBlood_CRC305D2GENT170426_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT170426 on day 28


title: WholeBlood_CRC305D2GENT192821_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT192821 on day 28


title: WholeBlood_CRC305D2GENT237529_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT237529 on day 28


title: T_RENCA_PD1_DX400_2dose_8d_1


title: WholeBlood_CRC305D2GENT242829_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT242829 on day 3


title: WholeBlood_CRC305D2GENT236826_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT236826 on day 28


title: WholeBlood_CRC305D2GENT189225_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT189225 on day 28


title: T_TC1_Baseline_3

value: Baseline


title: T_CM3_Iso_mIgG1_2dose_8d_4


title: T_B16F10_Iso_mIgG1_2dose_8d_4


title: WholeBlood_CRC305D2GENT229224_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT229224 on day 28


title: WholeBlood_CRC305D2GENT221430_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT221430 on day 3


title: WholeBlood_CRC305D2GENT214316_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT214316 on day 28


title: T_RENCA_Baseline_3


title: T_B16F10_Baseline_2


title: T_RENCA_Baseline_1


title: WholeBlood_CRC305D2GENT153424_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT153424 on day 28


title: T_B16F10_Iso_mIgG1_2dose_8d_2


title: T_RENCA_Iso_mIgG1_2dose_8d_5


title: T_TC1_Baseline_2


title: T_RENCA_PD1_DX400_2dose_8d_5


title: WholeBlood_CRC305D2GENT209820_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT209820 on day 28


title: WholeBlood_CRC305D2GENT176220_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT176220 on day 28


title: T_B16F10_Iso_mIgG1_2dose_8d_3


title: T_RENCA_Iso_mIgG1_2dose_8d_4


title: WholeBlood_CRC305D2GENT233828_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT233828 on day 3


title: WholeBlood_CRC305D2GENT220429_Day3

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT220429 on day 3


title: T_RENCA_PD1_DX400_2dose_8d_4


title: T_TC1_Baseline_1


title: WholeBlood_CRC305D2GENT190527_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT190527 on day 28


title: WholeBlood_CRC305D2GENT171722_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT171722 on day 28


title: WholeBlood_CRC305D2GENT239827_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT239827 on day 3


title: WholeBlood_CRC305D2GENT198219_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT198219 on day 28


title: WholeBlood_CRC305D2GENT241824_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT241824 on day 28


title: WholeBlood_CRC305D2GENT238223_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT238223 on day 28


title: T_B16F10_PD1_DX400_2dose_8d_3


title: T_B16F10_Baseline_1


title: T_B16F10_PD1_DX400_2dose_8d_4


title: T_B16F10_Baseline_3


title: WholeBlood_CRC305D2GENT236826_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT236826 on day 3


title: WholeBlood_CRC305D2GENT218428_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT218428 on day 3


title: T_B16F10_PD1_DX400_2dose_8d_2


title: WholeBlood_CRC305D2GENT231526_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT231526 on day 28


title: T_B16F10_PD1_DX400_2dose_8d_1


title: WholeBlood_CRC305D2GENT226724_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT226724 on day 28


title: T_RENCA_Iso_mIgG1_2dose_8d_2


title: T_RENCA_Iso_mIgG1_2dose_8d_1


title: WholeBlood_CRC305D2GENT149218_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT149218 on day 28


title: WholeBlood_CRC305D2GENT191721_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT191721 on day 28


title: T_RENCA_PD1_DX400_2dose_8d_3


title: WholeBlood_CRC305D2GENT156423_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT156423 on day 28


title: T_RENCA_Iso_mIgG1_2dose_8d_3


title: T_B16F10_Iso_mIgG1_2dose_8d_1


title: WholeBlood_CRC305D2GENT235222_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT235222 on day 28


title: WholeBlood_CRC305D2GENT154422_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT154422 on day 28


title: T_EMT6_Iso_mIgG1_2dose_8d_3


title: WholeBlood_CRC305D2GENT217330_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT217330 on day 3


title: T_RENCA_Baseline_2


title: T_MC38_Iso_mIgG1_2dose_8d_1


title: T_EMT6_PD1_DX400_2dose_8d_2


title: WholeBlood_CRC305D2GENT245723_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT245723 on day 28


title: T_EMT6_Iso_mIgG1_2dose_8d_5


title: WholeBlood_CRC305D2GENT208221_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT208221 on day 28


title: T_EMT6_PD1_DX400_2dose_8d_1


title: T_B16F10_Iso_mIgG1_2dose_8d_5


title: WholeBlood_CRC305D2GENT179525_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT179525 on day 28


title: WholeBlood_CRC305D2GENT181523_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT181523 on day 28


title: T_EMT6_Iso_mIgG1_2dose_8d_1


title: WholeBlood_CRC305D2GENT230324_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT230324 on day 28


title: WholeBlood_CRC305D2GENT223329_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT223329 on day 3


title: T_MC38_Iso_mIgG1_2dose_8d_4


title: T_LL2_Iso_mIgG1_2dose_8d_2


title: T_MC38_PD1_DX400_2dose_8d_1


title: WholeBlood_CRC305D2GENT244825_Day3

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT244825 on day 3


title: WholeBlood_CRC305D2GENT241824_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT241824 on day 3


title: WholeBlood_CRC305D2GENT216625_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT216625 on day 28


title: WholeBlood_CRC305D2GENT143522_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT143522 on day 28


title: WholeBlood_CRC305D2GENT180130_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT180130 on day 28


title: WholeBlood_CRC305D2GENT182524_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT182524 on day 28


title: WholeBlood_CRC305D2GENT199125_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT199125 on day 28


title: WholeBlood_CRC305D2GENT146217_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT146217 on day 28


title: T_EMT6_PD1_DX400_2dose_8d_3


title: WholeBlood_CRC305D2GENT222328_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT222328 on day 3


title: WholeBlood_CRC305D2GENT187323_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT187323 on day 28


title: T_LL2_PD1_DX400_2dose_8d_3


title: T_EMT6_Iso_mIgG1_2dose_8d_4


title: T_LL2_Iso_mIgG1_2dose_8d_5


title: T_EMT6_PD1_DX400_2dose_8d_5


title: T_MC38_PD1_DX400_2dose_8d_3


title: T_MC38_PD1_DX400_2dose_8d_5


title: WholeBlood_CRC305D2GENT247730_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT247730 on day 3


title: WholeBlood_CRC305D2GENT240427_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT240427 on day 28


title: T_MC38_PD1_DX400_2dose_8d_4


title: T_LL2_Iso_mIgG1_2dose_8d_1


title: T_LL2_Iso_mIgG1_2dose_8d_4


title: WholeBlood_CRC305D2GENT142521_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT142521 on day 28


title: T_MC38_Iso_mIgG1_2dose_8d_3


title: WholeBlood_CRC305D2GENT213624_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT213624 on day 28


title: T_LL2_Iso_mIgG1_2dose_8d_3


title: WholeBlood_CRC305D2GENT186227_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT186227 on day 1


title: WholeBlood_CRC305D2GENT168322_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT168322 on day 28


title: WholeBlood_CRC305D2GENT205129_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT205129 on day 28


title: T_MC38_PD1_DX400_2dose_8d_2


title: WholeBlood_CRC305D2GENT232630_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT232630 on day 0


title: T_LL2_PD1_DX400_2dose_8d_2


title: WholeBlood_CRC305D2GENT241824_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT241824 on day 7


title: WholeBlood_CRC305D2GENT216625_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT216625 on day 7


title: T_LL2_PD1_DX400_2dose_8d_4


title: T_TC1_PD1_DX400_2dose_8d_3


title: T_LL2_PD1_DX400_2dose_8d_1


title: WholeBlood_CRC305D2GENT178729_Day3

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT178729 on day 3


title: T_LL2_PD1_DX400_2dose_8d_5


title: T_EMT6_PD1_DX400_2dose_8d_4


title: WholeBlood_CRC305D2GENT242829_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT242829 on day 1


title: WholeBlood_CRC305D2GENT197226_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT197226 on day 1


title: WholeBlood_CRC305D2GENT196124_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT196124 on day 28


title: WholeBlood_CRC305D2GENT219230_Day7

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT219230 on day 7


title: T_TC1_Iso_mIgG1_2dose_8d_5


title: T_MC38_Iso_mIgG1_2dose_8d_2


title: WholeBlood_CRC305D2GENT224327_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT224327 on day 0


title: WholeBlood_CRC305D2GENT215728_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT215728 on day 7


title: T_MC38_Iso_mIgG1_2dose_8d_5


title: T_TC1_PD1_DX400_2dose_8d_2


title: T_TC1_PD1_DX400_2dose_8d_4


title: WholeBlood_CRC305D2GENT195530_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT195530 on day 1


title: T_EMT6_Iso_mIgG1_2dose_8d_2


title: WholeBlood_CRC305D2GENT200629_Day0

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT200629 on day 0


title: T_TC1_Iso_mIgG1_2dose_8d_2


title: T_TC1_Iso_mIgG1_2dose_8d_1


title: T_TC1_Iso_mIgG1_2dose_8d_3


title: WholeBlood_CRC305D2GENT195530_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT195530 on day 7


title: T_TC1_Iso_mIgG1_2dose_8d_4


title: T_TC1_PD1_DX400_2dose_8d_5


title: WholeBlood_CRC305D2GENT202229_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT202229 on day 7


title: WholeBlood_CRC305D2GENT189225_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT189225 on day 1


title: WholeBlood_CRC305D2GENT247730_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT247730 on day 1


title: T_EMT6_Baseline_3


title: T_TC1_PD1_DX400_2dose_8d_1


title: WholeBlood_CRC305D2GENT193628_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT193628 on day 0


title: WholeBlood_CRC305D2GENT227727_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT227727 on day 7


title: WholeBlood_CRC305D2GENT219230_Day0

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT219230 on day 0


title: WholeBlood_CRC305D2GENT221430_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT221430 on day 7


title: WholeBlood_CRC305D2GENT201228_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT201228 on day 7


title: T_EMT6_Baseline_2


title: T_LL2_Baseline_3


title: T_MC38_Baseline_3


title: T_LL2_Baseline_1


title: WholeBlood_CRC305D2GENT221430_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT221430 on day 1


title: WholeBlood_CRC305D2GENT178729_Day1

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT178729 on day 1


title: WholeBlood_CRC305D2GENT220429_Day1

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT220429 on day 1


title: T_MC38_Baseline_1


title: T_4T1_Baseline_1


title: T_CM3_Baseline_2


title: WholeBlood_CRC305D2GENT180130_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT180130 on day 1


title: WholeBlood_CRC305D2GENT225726_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT225726 on day 7


title: T_CM3_Baseline_1


title: WholeBlood_CRC305D2GENT202229_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT202229 on day 0


title: T_MC38_Baseline_2


title: T_MB49_Baseline_2


title: WholeBlood_CRC305D2GENT224327_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT224327 on day 3


title: WholeBlood_CRC305D2GENT220429_Day7

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT220429 on day 7


title: WholeBlood_CRC305D2GENT215728_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT215728 on day 1


title: T_MBT2_Baseline_3


title: T_MB49_Baseline_1


title: WholeBlood_CRC305D2GENT186227_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT186227 on day 7


title: WholeBlood_CRC305D2GENT218428_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT218428 on day 1


title: T_4T1_Baseline_2


title: T_CT26_Baseline_1


title: T_MBT2_Baseline_2


title: T_CT26_Baseline_2


title: T_MB49_Baseline_3


title: T_CT26_Baseline_3


title: WholeBlood_CRC305D2GENT246830_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT246830 on day 0


title: WholeBlood_CRC305D2GENT201228_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT201228 on day 0


title: WholeBlood_CRC305D2GENT184626_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT184626 on day 0


title: WholeBlood_CRC305D2GENT197226_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT197226 on day 7


title: WholeBlood_CRC305D2GENT217330_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT217330 on day 1


title: WholeBlood_CRC305D2GENT242829_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT242829 on day 0


title: WholeBlood_CRC305D2GENT218428_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT218428 on day 7


title: WholeBlood_CRC305D2GENT216625_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT216625 on day 0


title: WholeBlood_CRC305D2GENT207627_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT207627 on day 0


title: T_MBT2_Baseline_1


title: T_4T1_Baseline_3


title: T_EMT6_Baseline_1


title: T_LL2_Baseline_2


title: T_CM3_Baseline_3


title: WholeBlood_CRC305D2GENT226724_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT226724 on day 7


title: WholeBlood_CRC305D2GENT222328_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT222328 on day 0


title: WholeBlood_CRC305D2GENT189225_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT189225 on day 7


title: WholeBlood_CRC305D2GENT195530_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT195530 on day 0


title: Phlegm-dampness constitution_PBMCs Replicate 13

city: 北京

first: Lidan

last: Dong

state: 北京

address: 北京北三环东路11号

country: China

institute: 北京中医药大学

description: Biological replicate 13 of 13.Phlegm-dampness constitution, peripheral blood mononuclear cells.

hyb_protocol: Oligoarray control targets and hybridization buffer (Crystal Core ® biochip Universal labeling kit) were added, and samples were applied to microarrays enclosed in Agilent SureHyb-enabled hybridization chambers. After hybridization, slides were washed sequential

scan_protocol: Scanned on an Agilent G2565CA scanner. Agilent Feature Extraction(V10.7) software was used to analyze and extract data from scanned images.

data_processing: Agilent GeneSpring(V13.0) software was used for data normalization and difference analysis.

source_name: Phlegm-dampness constitution_ peripheral blood mononuclear cells

label_protocol: 14 µl cDNA ,obtained after reverse transcription and purification, were primed with 4 µl Random primer at 95°C for 3 min, then reversed transcribed at 37°C for 1.5 h in the presence of  Nucleospin® Extract II (MN company,Cat. No. 740609.250), and the purified product was labeled with 1 tube cy3-dCTP or another tube Cy5-dCTP.After the labeled and purified products were mixed, a total of 60 µl was vacuumized and concentrated to 27.5 µl for later use.

growth_protocol: The isolated PBMCs were treated with TRIzol reagent (Invitrogen, Carlsbad, CA, USA) to avoid RNA degradation, and then stored at -80°C.

extract_protocol: Total RNA extracted using Trizol following manufacturer's instructions

tag: cell type

value: PBMCs

tag: female

tag: diagnosis

value: Phlegm-dampness constitution

source_name: pooled reference


title: Phlegm-dampness constitution_PBMCs Replicate 11

description: Biological replicate 11 of 13.Phlegm-dampness constitution, peripheral blood mononuclear cells.


title: WholeBlood_CRC305D2GENT217330_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT217330 on day 7


title: Phlegm-dampness constitution_PBMCs Replicate 9

description: Biological replicate 9 of 13.Phlegm-dampness constitution, peripheral blood mononuclear cells.


title: WholeBlood_CRC305D2GENT227727_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT227727 on day 1


title: Phlegm-dampness constitution_PBMCs Replicate 12

description: Biological replicate 12 of 13.Phlegm-dampness constitution, peripheral blood mononuclear cells.


title: WholeBlood_CRC305D2GENT245723_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT245723 on day 7


title: WholeBlood_CRC305D2GENT240427_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT240427 on day 7


title: Phlegm-dampness constitution_PBMCs Replicate 8

description: Biological replicate 8 of 13.Phlegm-dampness constitution, peripheral blood mononuclear cells.


title: WholeBlood_CRC305D2GENT186227_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT186227 on day 0


title: Phlegm-dampness constitution_PBMCs Replicate 7

description: Biological replicate 7 of 13.Phlegm-dampness constitution, peripheral blood mononuclear cells.


title: Phlegm-dampness constitution_PBMCs Replicate 10

description: Biological replicate 10 of 13.Phlegm-dampness constitution, peripheral blood mononuclear cells.


title: WholeBlood_CRC305D2GENT180130_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT180130 on day 7


title: Phlegm-dampness constitution_PBMCs Replicate 6

description: Biological replicate 6 of 13.Phlegm-dampness constitution, peripheral blood mononuclear cells.


title: WholeBlood_CRC305D2GENT221430_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT221430 on day 0


title: WholeBlood_CRC305D2GENT232630_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT232630 on day 7


title: Phlegm-dampness constitution_PBMCs Replicate 4

description: Biological replicate 4 of 13.Phlegm-dampness constitution, peripheral blood mononuclear cells.


title: Phlegm-dampness constitution_PBMCs Replicate 1

description: Biological replicate 1 of 13.Phlegm-dampness constitution, peripheral blood mononuclear cells.


title: Phlegm-dampness constitution_PBMCs Replicate 3

description: Biological replicate 3 of 13.Phlegm-dampness constitution, peripheral blood mononuclear cells.


title: WholeBlood_CRC305D2GENT178729_Day0

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT178729 on day 0


title: Phlegm-dampness constitution_PBMCs Replicate 2

description: Biological replicate 2 of 13.Phlegm-dampness constitution, peripheral blood mononuclear cells.


title: Balanced constitution_PBMCs Replicate 8

description: Biological replicate 8 of 9.Balanced constitution, peripheral blood mononuclear cells.

source_name: Balanced constitution_ peripheral blood mononuclear cells

value: Balanced constitution


title: WholeBlood_CRC305D2GENT228725_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT228725 on day 7


title: WholeBlood_CRC305D2GENT189225_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT189225 on day 0


title: WholeBlood_CRC305D2GENT228725_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT228725 on day 1


title: Balanced constitution_PBMCs Replicate 4

description: Biological replicate 4 of 9.Balanced constitution, peripheral blood mononuclear cells.


title: Balanced constitution_PBMCs Replicate 3

description: Biological replicate 3 of 9.Balanced constitution, peripheral blood mononuclear cells.


title: Phlegm-dampness constitution_PBMCs Replicate 5

description: Biological replicate 5 of 13.Phlegm-dampness constitution, peripheral blood mononuclear cells.


title: Balanced constitution_PBMCs Replicate 7

description: Biological replicate 7 of 9.Balanced constitution, peripheral blood mononuclear cells.


title: Balanced constitution_PBMCs Replicate 6

description: Biological replicate 6 of 9.Balanced constitution, peripheral blood mononuclear cells.


title: WholeBlood_CRC305D2GENT223329_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT223329 on day 7


title: WholeBlood_CRC305D2GENT232630_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT232630 on day 1


title: Balanced constitution_PBMCs Replicate 9

description: Biological replicate 9 of 9.Balanced constitution, peripheral blood mononuclear cells.


title: WholeBlood_CRC305D2GENT247730_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT247730 on day 0


title: WholeBlood_CRC305D2GENT215728_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT215728 on day 0


title: WholeBlood_CRC305D2GENT205129_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT205129 on day 7


title: WholeBlood_CRC305D2GENT233828_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT233828 on day 7


title: Balanced constitution_PBMCs Replicate 5

description: Biological replicate 5 of 9.Balanced constitution, peripheral blood mononuclear cells.


title: WholeBlood_CRC305D2GENT220429_Day0

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT220429 on day 0


title: WholeBlood_CRC305D2GENT197226_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT197226 on day 0


title: WholeBlood_CRC305D2GENT222328_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT222328 on day 7


title: WholeBlood_CRC305D2GENT222328_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT222328 on day 1


title: WholeBlood_CRC305D2GENT200629_Day7

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT200629 on day 7


title: WholeBlood_CRC305D2GENT193628_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT193628 on day 1


title: WholeBlood_CRC305D2GENT224327_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT224327 on day 1


title: WholeBlood_CRC305D2GENT227727_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT227727 on day 0


title: Balanced constitution_PBMCs Replicate 1

description: Biological replicate 1 of 9.Balanced constitution, peripheral blood mononuclear cells.


title: WholeBlood_CRC305D2GENT243326_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT243326 on day 7


title: WholeBlood_CRC305D2GENT236826_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT236826 on day 7


title: WholeBlood_CRC305D2GENT184626_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT184626 on day 1


title: WholeBlood_CRC305D2GENT228725_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT228725 on day 0


title: WholeBlood_CRC305D2GENT193628_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT193628 on day 7


title: WholeBlood_CRC305D2GENT224327_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT224327 on day 7


title: WholeBlood_CRC305D2GENT126819_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT126819 on day 28


title: blood_145 [SampleGSM4820690]

type: genomic

city: Davis

first: Anita

last: Oberbauer

state: CA

address: One Shields Ave.

department: Animal Science Department

institute: University of California, Davis

description: Bovine genomic DNA extracted from the tail coccygeal vein was genotyped using the BovineHD Beadchip array (Illumina)

hyb_protocol: Hybridization was performed according to the Infinium HD Super Assay documentation using the automated protocol.

scan_protocol: Scanning was performed according to the Infinium HD Super Assay documentation using the automated protocol.

data_processing:
The Illumina GenomeStudio Genotyping Module was used to determine genotypes from the intensity data files (IDAT files) outputted from scanning the BeadChip.
The Illumina GenomeStudio Genotyping Module called genotypes and generated SNP statistics.

label: C-Bio, G-Bio, A-DNP, T-DNP

molecule: genomic DNA

organism: Bos taurus

source_name: blood from coccygeal vein in the tail

label_protocol: According to the Infinium HD Super Assay documentation (https://support.illumina.com/content/dam/illumina-support/documents/documentation/chemistry_documentation/infinium_assays/infinium-hd-super-assay/infinium-hd-super-assay-reference-guide-11322427-03.pdf), labels were added during allele-specific base extension.

extract_protocol: Whole blood sampled from the coccygueal vein of the tail were centrifuged, and the resulting buffy coat layer was stored at 4C until DNA extraction. Genomic DNA was extracted from buffy coat using the QIAGEN QIAamp DNA Blood Mini Kit according to the manufacturer's instructions.

tag: mastitis

tag: metritis

tag: milk fever

tag: farm

value: B

tag: Sex


title: WholeBlood_CRC305D2GENT219230_Day1

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT219230 on day 1

tag: tissue

tag: protocol

tag: treatment

tag: day

tag: participant


title: WholeBlood_CRC305D2GENT225726_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT225726 on day 0

tag: gender

tag: age

tag: race

tag: ethnicity

tag: recent boostrix


title: WholeBlood_CRC305D2GENT123818_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT123818 on day 28


title: WholeBlood_CRC305D2GENT239827_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT239827 on day 7


title: blood_144 [SampleGSM4820689]


title: WholeBlood_CRC305D2GENT207627_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT207627 on day 1


title: WholeBlood_CRC305D2GENT218428_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT218428 on day 0


title: WholeBlood_CRC305D2GENT244825_Day7

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT244825 on day 7


title: WholeBlood_CRC305D2GENT234325_Day7

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT234325 on day 7


title: blood_142 [SampleGSM4820687]


title: WholeBlood_CRC305D2GENT163817_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT163817 on day 28


title: blood_143 [SampleGSM4820688]


title: blood_141 [SampleGSM4820686]


title: WholeBlood_CRC305D2GENT207627_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT207627 on day 7


title: WholeBlood_CRC305D2GENT201228_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT201228 on day 1


title: WholeBlood_CRC305D2GENT217330_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT217330 on day 0


title: WholeBlood_CRC305D2GENT223329_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT223329 on day 0


title: WholeBlood_CRC305D2GENT202229_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT202229 on day 1


title: WholeBlood_CRC305D2GENT184626_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT184626 on day 7


title: WholeBlood_CRC305D2GENT162816_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT162816 on day 28


title: Balanced constitution_PBMCs Replicate 2

description: Biological replicate 2 of 9.Balanced constitution, peripheral blood mononuclear cells.

tag: cell type

tag: female


title: WholeBlood_CRC305D2GENT131313_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT131313 on day 28


title: blood_137 [SampleGSM4820682]

description: Bovine genomic DNA extracted from the tail coccygeal vein was genotyped using the BovineHD Beadchip array (Illumina)

tag: mastitis


title: WholeBlood_CRC305D2GENT184626_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT184626 on day 2


title: WholeBlood_CRC305D2GENT233828_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT233828 on day 1


title: blood_134 [SampleGSM4820679]

tag: metritis


title: blood_133 [SampleGSM4820678]

tag: milk fever


title: blood_132 [SampleGSM4820677]

tag: farm


title: blood_140 [SampleGSM4820685]

tag: Sex


title: blood_131 [SampleGSM4820676]

value: A


title: blood_130 [SampleGSM4820675]


title: WholeBlood_CRC305D2GENT161312_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT161312 on day 28

tag: tissue

value: whole blood


title: WholeBlood_CRC305D2GENT237529_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT237529 on day 1

tag: protocol

value: BOOSTRIX


title: blood_138 [SampleGSM4820683]


title: WholeBlood_CRC305D2GENT185620_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT185620 on day 1

tag: treatment


title: blood_129 [SampleGSM4820674]


title: blood_128 [SampleGSM4820673]


title: WholeBlood_CRC305D2GENT188823_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT188823 on day 7

tag: day


title: WholeBlood_CRC305D2GENT158720_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT158720 on day 28

tag: participant


title: WholeBlood_CRC305D2GENT139420_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT139420 on day 28

tag: gender

value: male


title: blood_136 [SampleGSM4820681]


title: WholeBlood_CRC305D2GENT216625_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT216625 on day 2

tag: age

value: white


title: WholeBlood_CRC305D2GENT239827_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT239827 on day 1

tag: race

value: not hispanic or latino


title: blood_127 [SampleGSM4820672]


title: blood_126 [SampleGSM4820671]


title: blood_135 [SampleGSM4820680]


title: blood_139 [SampleGSM4820684]


title: blood_124 [SampleGSM4820669]


title: WholeBlood_CRC305D2GENT183822_Day7

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT183822 on day 7

tag: ethnicity


title: blood_122 [SampleGSM4820667]


title: WholeBlood_CRC305D2GENT238223_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT238223 on day 1

tag: recent boostrix


title: blood_123 [SampleGSM4820668]


title: WholeBlood_CRC305D2GENT213624_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT213624 on day 2


title: blood_121 [SampleGSM4820666]


title: blood_120 [SampleGSM4820665]


title: WholeBlood_CRC305D2GENT137419_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT137419 on day 28


title: WholeBlood_CRC305D2GENT235222_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT235222 on day 1


title: WholeBlood_CRC305D2GENT164719_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT164719 on day 28


title: WholeBlood_CRC305D2GENT206311_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT206311 on day 28


title: WholeBlood_CRC305D2GENT174528_Day1

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT174528 on day 1


title: WholeBlood_CRC305D2GENT236826_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT236826 on day 1


title: WholeBlood_CRC305D2GENT192821_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT192821 on day 7


title: blood_118 [SampleGSM4820663]

description: Bovine genomic DNA extracted from the tail coccygeal vein was genotyped using the BovineHD Beadchip array (Illumina)


title: WholeBlood_CRC305D2GENT208221_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT208221 on day 1


title: blood_119 [SampleGSM4820664]


title: blood_117 [SampleGSM4820662]


title: WholeBlood_CRC305D2GENT125418_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT125418 on day 28


title: WholeBlood_CRC305D2GENT169619_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT169619 on day 28


title: blood_125 [SampleGSM4820670]


title: blood_115 [SampleGSM4820660]


city: Philadelphia

first: Priyankara

middle: J

last: Wickramasinghe

state: PA

address: 3601 Spruce Street

department: Bioinformatics

institute: The Wistar Institute

description:
low progression free survival group, patient 7
low.7

data_processing:
RNA-Seq data analysis was done with rsem (ver. 1.2.3) and hg38 genome with ensemble transcriptome information
DESeq2 was used for differentail expression analysis
Genome_build: hg38
Supplementary_files_format_and_content: Processed data file contains the raw counts for each gene

molecule: polyA RNA

source_name: FFPE melanoma tumor

extract_protocol:
Total RNA was extracted using Life Technologies Recover All Total Nucleic Acid Isolation kit- FFPE (AM1975-R10)
Sequencing library preparation was then completed using Kapa RNAseq w/o rRNA removal (R130) libarry preparation kit according to the manufacturer’s instructions

tag: progression-free survival (pfs) rate

value: low

tag: patientid

tag: ldh level

value: normal


description:
low progression free survival group, patient 6
low.6

value: elevated


description:
low progression free survival group, patient 8
low.8


title: blood_113 [SampleGSM4820658]

tag: mastitis

tag: metritis

value: female


description:
low progression free survival group, patient 5
low.5


title: blood_116 [SampleGSM4820661]

tag: milk fever

tag: farm


title: WholeBlood_CRC305D2GENT135618_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT135618 on day 28

tag: tissue


title: blood_114 [SampleGSM4820659]

tag: Sex


description:
low progression free survival group, patient 4
low.4


title: WholeBlood_CRC305D2GENT244825_Day1

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT244825 on day 1

tag: protocol

tag: treatment


title: WholeBlood_CRC305D2GENT176220_Day1

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT176220 on day 1

tag: day

tag: participant


title: blood_112 [SampleGSM4820657]


title: WholeBlood_CRC305D2GENT190527_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT190527 on day 1

tag: gender

tag: age


title: WholeBlood_CRC305D2GENT171722_Day7

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT171722 on day 7

tag: race

tag: ethnicity


title: WholeBlood_CRC305D2GENT195530_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT195530 on day 2

tag: recent boostrix


title: WholeBlood_CRC305D2GENT127417_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT127417 on day 28


title: blood_111 [SampleGSM4820656]


title: WholeBlood_CRC305D2GENT241824_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT241824 on day 1


title: WholeBlood_CRC305D2GENT129120_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT129120 on day 28


description:
low progression free survival group, patient 3
low.3

tag: progression-free survival (pfs) rate

tag: patientid


title: WholeBlood_CRC305D2GENT198219_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT198219 on day 1


title: WholeBlood_CRC305D2GENT231526_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT231526 on day 1


title: WholeBlood_CRC305D2GENT202229_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT202229 on day 2


title: WholeBlood_CRC305D2GENT175416_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT175416 on day 28


description:
low progression free survival group, patient 2
low.2

tag: ldh level


title: WholeBlood_CRC305D2GENT219230_Day2

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT219230 on day 2


description:
low progression free survival group, patient 1
low.1


description:
high progression free survival group, patient 7
high.7

value: high


title: blood_108 [SampleGSM4820653]

description: Bovine genomic DNA extracted from the tail coccygeal vein was genotyped using the BovineHD Beadchip array (Illumina)

tag: mastitis

tag: metritis


title: blood_106 [SampleGSM4820651]

tag: milk fever

tag: farm


description:
high progression free survival group, patient 5
high.5


title: blood_107 [SampleGSM4820652]

tag: Sex


title: blood_105 [SampleGSM4820650]


description:
high progression free survival group, patient 6
high.6


title: WholeBlood_CRC305D2GENT179525_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT179525 on day 1

tag: tissue

tag: protocol


title: WholeBlood_CRC305D2GENT226724_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT226724 on day 1

tag: treatment

tag: day


title: WholeBlood_CRC305D2GENT128617_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT128617 on day 28

tag: participant

tag: gender


title: WholeBlood_CRC305D2GENT213624_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT213624 on day 7

tag: age

tag: race


title: WholeBlood_CRC305D2GENT201228_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT201228 on day 2

tag: ethnicity

tag: recent boostrix


title: WholeBlood_CRC305D2GENT245723_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT245723 on day 1


title: WholeBlood_CRC305D2GENT116118_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT116118 on day 28


title: blood_110 [SampleGSM4820655]


title: blood_104 [SampleGSM4820649]


description:
high progression free survival group, patient 3
high.3

tag: progression-free survival (pfs) rate

tag: patientid


title: blood_109 [SampleGSM4820654]

tag: mastitis


title: WholeBlood_CRC305D2GENT114615_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT114615 on day 28


title: blood_103 [SampleGSM4820648]

tag: metritis


title: WholeBlood_CRC305D2GENT173623_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT173623 on day 7


title: WholeBlood_CRC305D2GENT182524_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT182524 on day 1


description:
high progression free survival group, patient 2
high.2

tag: ldh level


title: blood_102 [SampleGSM4820647]

tag: milk fever

tag: farm


title: WholeBlood_CRC305D2GENT205129_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT205129 on day 1

tag: tissue


description:
high progression free survival group, patient 4
high.4


title: WholeBlood_CRC305D2GENT191721_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT191721 on day 7

tag: protocol


title: WholeBlood_CRC305D2GENT118117_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT118117 on day 28

tag: treatment


title: WholeBlood_CRC305D2GENT186227_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT186227 on day 2

tag: day


title: blood_101 [SampleGSM4820646]

description: Bovine genomic DNA extracted from the tail coccygeal vein was genotyped using the BovineHD Beadchip array (Illumina)

tag: Sex


title: WholeBlood_CRC305D2GENT200629_Day1

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT200629 on day 1

tag: participant

tag: gender


title: mTEChi indiv5

city: Nantes

first: Matthieu

last: Giraud

address: 30 bd Jean Monnet

department: CRTI

country: France

institute: INSERM _ Université de Nantes

data_processing:
The paired-end sequencing (2x150bp) was performed on the Illumina NextSeq500
The reads were homogenized to 2x100 bp by read-trimming to match the read length of the other samples in our study
The fastq files were mapped to the hg38 genome with TopHat 2.
Genome_build: Hg38
Supplementary_files_format_and_content: text files include gene and isoform fpkm quantification generated by Tophat 2

source_name: medullary thymic epithelial cells

extract_protocol:
RNA was isolated with miRNAeasy Mini Kit (Qiagen) with DNase treatment
The RNA quality was assessed with TapeStation (Agilent D1000) before the processing with SMART-Seq v4 Ultra Low Input RNA Kit for Sequencing, and the library preparation with Illumina Nextera XT DNA Library Preparation Kit.

value: thymus

tag: cell type

value: MHCII high medullary epithelial cells


title: blood_100 [SampleGSM4820645]


title: mTEChi indiv4


title: WholeBlood_CRC305D2GENT210128_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT210128 on day 1

tag: age

tag: race

tag: ethnicity


title: WholeBlood_CRC305D2GENT181523_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT181523 on day 1

tag: recent boostrix


title: WholeBlood_CRC305D2GENT249622_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT249622 on day 7


title: WholeBlood_CRC305D2GENT203127_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT203127 on day 1


title: WholeBlood_CRC305D2GENT159414_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT159414 on day 28


title: WholeBlood_CRC305D2GENT102216_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT102216 on day 28


title: mTEChi indiv3


title: WholeBlood_CRC305D2GENT232630_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT232630 on day 2


description:
high progression free survival group, patient 1
high.1

tag: progression-free survival (pfs) rate

tag: patientid


title: blood_99 [SampleGSM4820644]

tag: mastitis

tag: metritis


title: WholeBlood_CRC305D2GENT197226_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT197226 on day 2


title: mTEChi indiv1


title: blood_96 [SampleGSM4820641]

tag: milk fever

tag: farm


title: blood_97 [SampleGSM4820642]


title: Rho0_confluent_4

city: Vestec by Prague

first: Jakub

last: Rohlena

address: Prumyslova 595

country: Czech Republic

institute: Institute of Biotechnology, CAS, v.v.i.

data_processing:
The raw sequenced reads were mapped to the human reference transcriptome and genome (build GRCh38) and were assigned to ensemble gene Ids using the kallisto (Bray et al., 2016)
Raw count gene expression data were filtered for genes expressed at a level of at least 1 count per million reads in at least 10% of samples, and normalized using trimmed mean of M-values (TMM) available from the EdgeR package (Robinson et al., 2010).
Differentially expressed genes and their false discovery rate (FDR) corrected p values were identified by the Limma package (Ritchie et al., 2015).
Genome_build: GRCh38
Supplementary_files_format_and_content: Tab-delimited text files include non-normalized and normalized number of reads for each Sample

source_name: Ea.hy926 cell line

extract_protocol:
RNA was isolated using RNAzol (Molecular Research Center) according to the manufacturer’s instructions. RNA was dissolved in the TE buffer (Thermofisher), and remaining DNA contamination was removed using DNAse I (Sigma-Aldrich) for 30 min. To clean RNA, the same volume of 8 M LiCl (Sigma-Aldrich) was added and incubated overnight at -20°C. Samples were centrifuged for 30 min at 16,100 x g/ 2°C; the supernatant was removed and the pellet washed twice in 80 % ethanol, followed by centrifugation as above. The remaining ethanol was evaporated at 65°C for 10 min, and RNA was dissolved in 20 µl of TE buffer. Concentration of total RNA was measured by Nanodrop 2000. The quality of RNA was verified using a Fragment Analyzer along with the RNA Standard Sensitivity kit (AATI, DNF-471).
The RNA-Seq libraries were prepared from 2 ng of Total RNA using the SureSelect Strand-Specific RNA Library Prep kit (Agilent, G9691A), which targeted for the enrichment of RNA with poly-A tail. The quality of the final libraries was checked using a Fragment Analyzer along with the NGS High Sensitivity kit (AATI, DNF-474).

tag: cell line

tag: condition

value: OXPHOS-deficient (Rho0)

tag: biological replicate


title: blood_95 [SampleGSM4820640]

tag: Sex


title: WholeBlood_CRC305D2GENT213624_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT213624 on day 1

tag: tissue

tag: protocol

tag: treatment

tag: day

tag: participant


title: WholeBlood_CRC305D2GENT115515_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT115515 on day 28

tag: gender

tag: age

tag: race

tag: ethnicity


title: blood_98 [SampleGSM4820643]

tag: mastitis


title: Rho0_confluent_3


title: mTEChi indiv2

tag: cell type


title: WholeBlood_CRC305D2GENT204126_Day1

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT204126 on day 1

tag: recent boostrix


title: WholeBlood_CRC305D2GENT166413_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT166413 on day 28


title: WholeBlood_CRC305D2GENT200629_Day2

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT200629 on day 2


title: blood_94 [SampleGSM4820639]

tag: metritis

tag: milk fever

tag: farm


title: WholeBlood_CRC305D2GENT173623_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT173623 on day 1


title: WholeBlood_CRC305D2GENT122614_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT122614 on day 28


title: Rho0_confluent_2

tag: cell line

tag: condition

tag: biological replicate


title: WholeBlood_CRC305D2GENT240427_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT240427 on day 1

tag: tissue

tag: protocol


title: WholeBlood_CRC305D2GENT177621_Day7

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT177621 on day 7

tag: treatment

tag: day


title: blood_93 [SampleGSM4820638]

description: Bovine genomic DNA extracted from the tail coccygeal vein was genotyped using the BovineHD Beadchip array (Illumina)

tag: Sex


title: WholeBlood_CRC305D2GENT160412_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT160412 on day 28

tag: participant

tag: gender

tag: age


title: Rho0_confluent_1


title: blood_92 [SampleGSM4820637]

tag: mastitis


title: WholeBlood_CRC305D2GENT189225_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT189225 on day 2

tag: race

tag: ethnicity


title: Eahy_confluent_4

value: parental (Eahy)


title: WholeBlood_CRC305D2GENT243326_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT243326 on day 1

tag: recent boostrix


title: blood_91 [SampleGSM4820636]

tag: metritis

tag: milk fever


title: blood_90 [SampleGSM4820635]

tag: farm


title: Eahy_confluent_2

tag: cell line

tag: condition


title: WholeBlood_CRC305D2GENT117514_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT117514 on day 28

tag: tissue


title: WholeBlood_CRC305D2GENT130119_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT130119 on day 28

tag: protocol


title: WholeBlood_CRC305D2GENT199125_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT199125 on day 1

tag: treatment


title: WholeBlood_CRC305D2GENT180130_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT180130 on day 2

tag: day


title: WholeBlood_CRC305D2GENT185620_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT185620 on day 7


title: WholeBlood_CRC305D2GENT249622_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT249622 on day 1


title: WholeBlood_CRC305D2GENT132315_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT132315 on day 28


title: WholeBlood_CRC305D2GENT193628_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT193628 on day 2


title: WholeBlood_CRC305D2GENT234325_Day1

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT234325 on day 1


title: blood_89 [SampleGSM4820634]

tag: Sex


title: blood_88 [SampleGSM4820633]


title: Eahy_confluent_3

tag: biological replicate


title: blood_87 [SampleGSM4820632]


title: WholeBlood_CRC305D2GENT196124_Day1

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT196124 on day 1

tag: participant

tag: gender


title: MMBC070009CAC

city: CHICAGO

first: JI

last: NIE

state: IL

department: Chemistry

institute: The University of Chicago

library_source: genomic

data_processing:
Sequenced reads were trimmed by trimmomatic(v0.36), then mapped to targeted sites by bowtie2.
Barcode counts were called. Batch effect was corrected by combat, R sva package.
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text file includes barcode counts for each sample

source_name: plasma

extract_protocol:
Cell-free DNA was isolated from plasma using QIAamp Circulating Nucleic Acid Kit (Qiagen) according to the manufacturer’s protocol.
Library construction was performed for illumina sequencing platform.

value: plasma

tag: patient diagnosis

value: pancreatic cancer

tag: tissue compartment

value: cell-free DNA


title: MMBC070010CAC


title: Eahy_confluent_1


title: blood_85 [SampleGSM4820630]

tag: mastitis

value: A


title: MMBC070007CAC


title: blood_86 [SampleGSM4820631]


title: blood_84 [SampleGSM4820629]


title: WholeBlood_CRC305D2GENT207627_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT207627 on day 2

value: whole blood

value: BOOSTRIX

tag: age

tag: race

tag: ethnicity

tag: recent boostrix


title: WholeBlood_CRC305D2GENT229224_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT229224 on day 1

value: male

value: white


title: WholeBlood_CRC305D2GENT205129_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT205129 on day 2

value: not hispanic or latino


title: WholeBlood_CRC305D2GENT237529_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT237529 on day 7


title: WholeBlood_CRC305D2GENT194123_Day1

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT194123 on day 1


title: WholeBlood_CRC305D2GENT233828_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT233828 on day 0


title: WholeBlood_CRC305D2GENT237529_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT237529 on day 0


title: MMBC070005CAC


title: MMBC070006CAC


title: blood_83 [SampleGSM4820628]

description: Bovine genomic DNA extracted from the tail coccygeal vein was genotyped using the BovineHD Beadchip array (Illumina)

tag: metritis

tag: milk fever

tag: farm


title: WholeBlood_CRC305D2GENT177621_Day1

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT177621 on day 1

tag: tissue

tag: protocol


title: MMBC070004CAC


title: MMBC070008CAC


title: blood_82 [SampleGSM4820627]


title: MMBC070003CAC


title: MMBC070002CAC


title: blood_79 [SampleGSM4820624]


title: WholeBlood_CRC305D2GENT140314_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT140314 on day 28

tag: treatment

tag: day


title: blood_80 [SampleGSM4820625]

tag: Sex


title: WholeBlood_CRC305D2GENT095612_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT095612 on day 28

tag: participant


title: blood_77 [SampleGSM4820622]


title: WholeBlood_CRC305D2GENT190527_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT190527 on day 7

tag: gender


title: WholeBlood_CRC305D2GENT239827_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT239827 on day 0


title: blood_81 [SampleGSM4820626]


title: MMBC060008CAC

tag: patient diagnosis

value: nasopharyngeal Carcinoma


title: blood_76 [SampleGSM4820621]


title: WholeBlood_CRC305D2GENT090611_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT090611 on day 28


title: WholeBlood_CRC305D2GENT235222_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT235222 on day 0


title: MMBC060009CAC

tag: tissue compartment


title: WholeBlood_CRC305D2GENT076814_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT076814 on day 28


title: WholeBlood_CRC305D2GENT087409_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT087409 on day 28


title: WholeBlood_CRC305D2GENT208221_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT208221 on day 7


title: WholeBlood_CRC305D2GENT174528_Day0

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT174528 on day 0


title: WholeBlood_CRC305D2GENT104513_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT104513 on day 28


title: WholeBlood_CRC305D2GENT236826_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT236826 on day 0


title: WholeBlood_CRC305D2GENT083408_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT083408 on day 28


title: WholeBlood_CRC305D2GENT108813_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT108813 on day 28


title: WholeBlood_CRC305D2GENT176220_Day7

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT176220 on day 7


title: WholeBlood_CRC305D2GENT176220_Day0

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT176220 on day 0


title: WholeBlood_CRC305D2GENT231526_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT231526 on day 7


title: WholeBlood_CRC305D2GENT208221_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT208221 on day 0


title: WholeBlood_CRC305D2GENT135618_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT135618 on day 7


title: WholeBlood_CRC305D2GENT190527_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT190527 on day 0


title: MMBC060007CAC


title: blood_75 [SampleGSM4820620]

description: Bovine genomic DNA extracted from the tail coccygeal vein was genotyped using the BovineHD Beadchip array (Illumina)

tag: mastitis


title: MMBC070001CAC


title: blood_78 [SampleGSM4820623]


title: MMBC060005CAC


title: WholeBlood_CRC305D2GENT068718_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT068718 on day 28

tag: age


title: blood_73 [SampleGSM4820618]


title: MMBC060006CAC


title: blood_74 [SampleGSM4820619]


title: MMBC060004CAC


title: blood_72 [SampleGSM4820617]


title: WholeBlood_CRC305D2GENT089610_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT089610 on day 28

tag: race


title: MMBC060003CAC


title: blood_71 [SampleGSM4820616]


title: MMBC060002CAC


title: blood_70 [SampleGSM4820615]


title: WholeBlood_CRC305D2GENT198219_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT198219 on day 7

tag: ethnicity


title: MMBC060001CAC


title: WholeBlood_CRC305D2GENT179525_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT179525 on day 7

tag: recent boostrix


title: WholeBlood_CRC305D2GENT088609_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT088609 on day 28


title: blood_69 [SampleGSM4820614]

tag: metritis


title: WholeBlood_CRC305D2GENT231526_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT231526 on day 0


title: WholeBlood_CRC305D2GENT198219_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT198219 on day 0


title: MMBC040039CAC

value: hepatocellular carcinoma


title: WholeBlood_CRC305D2GENT182524_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT182524 on day 7

value: female


title: WholeBlood_CRC305D2GENT071717_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT071717 on day 28


title: blood_68 [SampleGSM4820613]

tag: milk fever


title: WholeBlood_CRC305D2GENT241824_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT241824 on day 0


title: blood_67 [SampleGSM4820612]

tag: farm


title: WholeBlood_CRC305D2GENT179525_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT179525 on day 0

tag: tissue


title: MMBC040037CAC


title: blood_65 [SampleGSM4820610]


title: WholeBlood_CRC305D2GENT157309_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT157309 on day 28

tag: protocol


title: MMBC040036CAC


title: blood_66 [SampleGSM4820611]


title: blood_64 [SampleGSM4820609]


title: WholeBlood_CRC305D2GENT165310_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT165310 on day 28

tag: treatment


title: MMBC040038CAC


title: MMBC040035CAC


title: WholeBlood_CRC305D2GENT180130_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT180130 on day 0

tag: day


title: blood_63 [SampleGSM4820608]

tag: Sex


title: blood_62 [SampleGSM4820607]


title: MMBC040034CAC


title: MMBC040033CAC


title: blood_61 [SampleGSM4820606]


title: WholeBlood_CRC305D2GENT065716_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT065716 on day 28

tag: participant


title: MMBC040040CAC


title: WholeBlood_CRC305D2GENT069608_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT069608 on day 28

tag: gender


title: WholeBlood_CRC305D2GENT203127_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT203127 on day 7


title: MMBC040032CAC

tag: patient diagnosis


title: blood_60 [SampleGSM4820605]

description: Bovine genomic DNA extracted from the tail coccygeal vein was genotyped using the BovineHD Beadchip array (Illumina)


title: MMBC040031CAC

tag: tissue compartment


title: blood_59 [SampleGSM4820604]

tag: mastitis


title: WholeBlood_CRC305D2GENT182524_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT182524 on day 0

tag: age


title: WholeBlood_CRC305D2GENT072715_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT072715 on day 28

tag: race


title: MMBC040030CAC

value: intraheptic cholangiocarcinoma


title: blood_58 [SampleGSM4820603]


title: WholeBlood_CRC305D2GENT244825_Day0

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT244825 on day 0

tag: ethnicity


title: WholeBlood_CRC305D2GENT181523_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT181523 on day 7

tag: recent boostrix


title: WholeBlood_CRC305D2GENT226724_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT226724 on day 0


title: MMBC040029CAC


title: blood_57 [SampleGSM4820602]

tag: metritis


title: WholeBlood_CRC305D2GENT070307_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT070307 on day 28


title: MMBC050009CAC

value: lung cancer


title: WholeBlood_CRC305D2GENT205129_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT205129 on day 0


title: blood_56 [SampleGSM4820601]

tag: milk fever


title: MMBC050008CAC


title: WholeBlood_CRC305D2GENT181523_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT181523 on day 0


title: WholeBlood_CRC305D2GENT079714_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT079714 on day 28


title: WholeBlood_CRC305D2GENT199125_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT199125 on day 7


title: blood_55 [SampleGSM4820600]

tag: farm


title: WholeBlood_CRC305D2GENT082306_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT082306 on day 28

tag: tissue


title: MMBC050007CAC


title: WholeBlood_CRC305D2GENT110512_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT110512 on day 28

tag: protocol


title: WholeBlood_CRC305D2GENT245723_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT245723 on day 0

tag: treatment


title: MMBC050006CAC


title: blood_54 [SampleGSM4820599]


title: WholeBlood_CRC305D2GENT133425_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT133425 on day 7

tag: day


title: WholeBlood_CRC305D2GENT107511_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT107511 on day 28


title: WholeBlood_CRC305D2GENT111215_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT111215 on day 28


title: MMBC050005CAC


title: WholeBlood_CRC305D2GENT203127_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT203127 on day 0


title: WholeBlood_CRC305D2GENT230324_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT230324 on day 7


title: blood_53 [SampleGSM4820598]

description: Bovine genomic DNA extracted from the tail coccygeal vein was genotyped using the BovineHD Beadchip array (Illumina)

tag: Sex


title: WholeBlood_CRC305D2GENT240427_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT240427 on day 0

tag: participant


title: WholeBlood_CRC305D2GENT213624_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT213624 on day 0

tag: gender


title: WholeBlood_CRC305D2GENT210128_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT210128 on day 7


title: WholeBlood_CRC305D2GENT106510_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT106510 on day 28


title: MMBC050004CAC

tag: patient diagnosis


title: WholeBlood_CRC305D2GENT173623_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT173623 on day 0


title: MMBC050003CAC

tag: tissue compartment


title: WholeBlood_CRC305D2GENT196124_Day7

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT196124 on day 7


title: MMBC050002CAC


title: blood_50 [SampleGSM4820595]

tag: mastitis


title: blood_51 [SampleGSM4820596]


title: WholeBlood_CRC305D2GENT243326_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT243326 on day 0

tag: age


title: WholeBlood_CRC305D2GENT099713_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT099713 on day 28

tag: race


title: WholeBlood_CRC305D2GENT187323_Day7

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT187323 on day 7

tag: ethnicity


title: WholeBlood_CRC305D2GENT210128_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT210128 on day 0

tag: recent boostrix


title: WholeBlood_CRC305D2GENT112214_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT112214 on day 28


title: WholeBlood_CRC305D2GENT105712_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT105712 on day 28


title: WholeBlood_CRC305D2GENT204126_Day0

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT204126 on day 0


title: WholeBlood_CRC305D2GENT078509_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT078509 on day 28


title: blood_49 [SampleGSM4820594]

tag: metritis


title: WholeBlood_CRC305D2GENT234325_Day0

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT234325 on day 0


title: blood_52 [SampleGSM4820597]

tag: milk fever


title: MMBC010058NOR

value: healthy


title: blood_48 [SampleGSM4820593]

tag: farm


title: WholeBlood_CRC305D2GENT249622_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT249622 on day 0

tag: tissue


title: blood_47 [SampleGSM4820592]

description: Bovine genomic DNA extracted from the tail coccygeal vein was genotyped using the BovineHD Beadchip array (Illumina)


title: WholeBlood_CRC305D2GENT199125_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT199125 on day 0

tag: protocol


title: MMBC010057NOR


title: WholeBlood_CRC305D2GENT061711_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT061711 on day 28

tag: treatment


title: MMBC010056NOR


title: blood_45 [SampleGSM4820590]


title: MMBC050001CAC


title: MMBC010055NOR


title: MMBC010054NOR


title: WholeBlood_CRC305D2GENT109116_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT109116 on day 28

tag: day


title: WholeBlood_CRC305D2GENT229224_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT229224 on day 7


title: WholeBlood_CRC305D2GENT073508_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT073508 on day 28


title: blood_43 [SampleGSM4820588]

tag: Sex


title: blood_44 [SampleGSM4820589]


title: WholeBlood_CRC305D2GENT194123_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT194123 on day 7

tag: participant


title: MMBC010053NOR


title: WholeBlood_CRC305D2GENT229224_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT229224 on day 0

tag: gender


title: WholeBlood_CRC305D2GENT177621_Day0

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT177621 on day 0


title: blood_42 [SampleGSM4820587]


title: MMBC010052NOR

tag: patient diagnosis


title: WholeBlood_CRC305D2GENT081411_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT081411 on day 28


title: WholeBlood_CRC305D2GENT196124_Day0

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT196124 on day 0


title: WholeBlood_CRC305D2GENT101710_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT101710 on day 28


title: WholeBlood_CRC305D2GENT100115_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT100115 on day 28


title: WholeBlood_CRC305D2GENT147122_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT147122 on day 7


title: blood_46 [SampleGSM4820591]


title: blood_40 [SampleGSM4820585]


title: MMBC010050NOR

tag: tissue compartment


title: WholeBlood_CRC305D2GENT185620_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT185620 on day 0


title: WholeBlood_CRC305D2GENT144121_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT144121 on day 7


title: WholeBlood_CRC305D2GENT238223_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT238223 on day 0


title: blood_41 [SampleGSM4820586]

description: Bovine genomic DNA extracted from the tail coccygeal vein was genotyped using the BovineHD Beadchip array (Illumina)

tag: mastitis


title: blood_38 [SampleGSM4820583]


title: MMBC010048NOR


title: WholeBlood_CRC305D2GENT113613_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT113613 on day 28

tag: age


title: MMBC010047NOR


title: MMBC010051NOR


title: WholeBlood_CRC305D2GENT238223_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT238223 on day 7

tag: race


title: WholeBlood_CRC305D2GENT074410_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT074410 on day 28

tag: ethnicity


title: WholeBlood_CRC305D2GENT103114_Day28

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT103114 on day 28

tag: recent boostrix


title: WholeBlood_CRC305D2GENT209820_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT209820 on day 7


title: WholeBlood_CRC305D2GENT248518_Day7

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT248518 on day 7


title: WholeBlood_CRC305D2GENT176220_Day2

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT176220 on day 2


title: WholeBlood_CRC305D2GENT194123_Day0

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT194123 on day 0


title: MMBC010046NOR


title: blood_36 [SampleGSM4820581]

tag: metritis


title: blood_35 [SampleGSM4820580]

tag: milk fever


title: MMBC010045NOR


title: blood_39 [SampleGSM4820584]

tag: farm


title: WholeBlood_CRC305D2GENT151320_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT151320 on day 7

tag: tissue


title: blood_34 [SampleGSM4820579]


title: WholeBlood_CRC305D2GENT188823_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT188823 on day 3

tag: protocol


title: WholeBlood_CRC305D2GENT249622_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT249622 on day 2

tag: treatment


title: WholeBlood_CRC305D2GENT119308_Day28

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT119308 on day 28

tag: day


title: MMBC010044NOR


title: blood_33 [SampleGSM4820578]

tag: Sex


title: MMBC010042NOR


title: blood_32 [SampleGSM4820577]


title: MMBC010041NOR


title: MMBC010043NOR


title: blood_30 [SampleGSM4820575]


title: blood_31 [SampleGSM4820576]


title: WholeBlood_CRC305D2GENT183822_Day3

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT183822 on day 3

tag: participant


title: blood_29 [SampleGSM4820574]


title: MMBC010039NOR


title: WholeBlood_CRC305D2GENT211319_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT211319 on day 7

tag: gender


title: blood_28 [SampleGSM4820573]


title: WholeBlood_CRC305D2GENT177621_Day2

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT177621 on day 2


title: WholeBlood_CRC305D2GENT143522_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT143522 on day 2


title: WholeBlood_CRC305D2GENT145516_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT145516 on day 7


title: WholeBlood_CRC305D2GENT149218_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT149218 on day 2


title: WholeBlood_CRC305D2GENT198219_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT198219 on day 2


title: WholeBlood_CRC305D2GENT142521_Day2

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT142521 on day 2


title: WholeBlood_CRC305D2GENT156423_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT156423 on day 3


title: WholeBlood_CRC305D2GENT126819_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT126819 on day 7


title: WholeBlood_CRC305D2GENT138318_Day7

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT138318 on day 7


title: WholeBlood_CRC305D2GENT123818_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT123818 on day 7


title: MMBC010038NOR

tag: patient diagnosis


title: MMBC010037NOR

tag: tissue compartment


title: blood_26 [SampleGSM4820571]

description: Bovine genomic DNA extracted from the tail coccygeal vein was genotyped using the BovineHD Beadchip array (Illumina)

tag: mastitis


title: blood_27 [SampleGSM4820572]


title: MMBC010049NOR


title: WholeBlood_CRC305D2GENT141520_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT141520 on day 2

tag: age


title: MMBC010036NOR


title: WholeBlood_CRC305D2GENT192821_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT192821 on day 3

tag: race


title: WholeBlood_CRC305D2GENT185620_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT185620 on day 2

tag: ethnicity


title: WholeBlood_CRC305D2GENT148517_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT148517 on day 7

tag: recent boostrix


title: MMBC010035NOR


title: blood_24 [SampleGSM4820569]

tag: metritis


title: WholeBlood_CRC305D2GENT146217_Day2

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT146217 on day 2


title: blood_23 [SampleGSM4820568]

tag: milk fever


title: blood_25 [SampleGSM4820570]

tag: farm


title: MMBC010034NOR

tag: tissue


title: WholeBlood_CRC305D2GENT169619_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT169619 on day 7

tag: protocol


title: WholeBlood_CRC305D2GENT115515_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT115515 on day 7

tag: treatment


title: MMBC010033NOR


title: WholeBlood_CRC305D2GENT209820_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT209820 on day 3

tag: day


title: WholeBlood_CRC305D2GENT154422_Day3

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT154422 on day 3


title: blood_22 [SampleGSM4820567]

tag: Sex


title: WholeBlood_CRC305D2GENT150317_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT150317 on day 7

tag: participant


title: MMBC010032NOR


title: WholeBlood_CRC305D2GENT169619_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT169619 on day 2

tag: gender


title: blood_21 [SampleGSM4820566]


title: MMBC010031NOR

tag: patient diagnosis


title: WholeBlood_CRC305D2GENT172519_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT172519 on day 2


title: WholeBlood_CRC305D2GENT152421_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT152421 on day 3


title: blood_20 [SampleGSM4820565]


title: blood_19 [SampleGSM4820564]


title: blood_18 [SampleGSM4820563]


title: MMBC010028NOR

tag: tissue compartment


title: WholeBlood_CRC305D2GENT126819_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT126819 on day 3


title: WholeBlood_CRC305D2GENT117514_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT117514 on day 7


title: WholeBlood_CRC305D2GENT203127_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT203127 on day 2


title: WholeBlood_CRC305D2GENT210128_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT210128 on day 2


title: WholeBlood_CRC305D2GENT248518_Day2

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT248518 on day 2


title: blood_17 [SampleGSM4820562]

description: Bovine genomic DNA extracted from the tail coccygeal vein was genotyped using the BovineHD Beadchip array (Illumina)

tag: mastitis


title: WholeBlood_CRC305D2GENT121616_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT121616 on day 7

tag: age


title: WholeBlood_CRC305D2GENT139420_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT139420 on day 3

tag: race


title: MMBC010027NOR


title: WholeBlood_CRC305D2GENT128617_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT128617 on day 7

tag: ethnicity


title: blood_16 [SampleGSM4820561]


title: MMBC010026NOR


title: blood_15 [SampleGSM4820560]


title: MMBC010029NOR


title: MMBC010030NOR


title: WholeBlood_CRC305D2GENT214316_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT214316 on day 7

tag: recent boostrix


title: MMBC010025NOR


title: blood_14 [SampleGSM4820559]

tag: metritis


title: blood_37 [SampleGSM4820582]

tag: milk fever


title: blood_13 [SampleGSM4820558]

tag: farm


title: MMBC010023NOR

tag: tissue


title: blood_12 [SampleGSM4820557]


title: MMBC010022NOR


title: blood_11 [SampleGSM4820556]


title: MMBC010021NOR


title: WholeBlood_CRC305D2GENT135618_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT135618 on day 2

tag: protocol


title: WholeBlood_CRC305D2GENT104513_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT104513 on day 7

tag: treatment


title: WholeBlood_CRC305D2GENT137419_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT137419 on day 3

tag: day


title: blood_10 [SampleGSM4820555]

tag: Sex


title: MMBC010024NOR


title: WholeBlood_CRC305D2GENT153424_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT153424 on day 3

tag: participant


title: MMBC010020NOR


title: blood_8 [SampleGSM4820553]


title: blood_7 [SampleGSM4820552]


title: MMBC010018NOR


title: MMBC010040NOR


title: MMBC010017NOR


title: WholeBlood_CRC305D2GENT204126_Day2

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT204126 on day 2

tag: gender


title: MMBC010019NOR

tag: patient diagnosis


title: WholeBlood_CRC305D2GENT123818_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT123818 on day 3


title: WholeBlood_CRC305D2GENT146217_Day7

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT146217 on day 7


title: WholeBlood_CRC305D2GENT114615_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT114615 on day 7


title: blood_6 [SampleGSM4820551]


title: WholeBlood_CRC305D2GENT149218_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT149218 on day 7


title: WholeBlood_CRC305D2GENT153424_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT153424 on day 7


title: MMBC010016NOR

tag: tissue compartment


title: WholeBlood_CRC305D2GENT125418_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT125418 on day 3


title: blood_5 [SampleGSM4820550]

tag: mastitis


title: WholeBlood_CRC305D2GENT245723_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT245723 on day 3

tag: age


title: MMBC010015NOR


title: blood_4 [SampleGSM4820549]

description: Bovine genomic DNA extracted from the tail coccygeal vein was genotyped using the BovineHD Beadchip array (Illumina)


title: WholeBlood_CRC305D2GENT199125_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT199125 on day 2

tag: race


title: MMBC010014NOR


title: WholeBlood_CRC305D2GENT127417_Day3

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT127417 on day 3

tag: ethnicity


title: WholeBlood_CRC305D2GENT145516_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT145516 on day 2

tag: recent boostrix


title: WholeBlood_CRC305D2GENT156423_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT156423 on day 7


title: WholeBlood_CRC305D2GENT122614_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT122614 on day 7


title: WholeBlood_CRC305D2GENT174528_Day2

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT174528 on day 2


title: WholeBlood_CRC305D2GENT171722_Day3

description: Whole blood gene expression of PLACEBOD2 treated participant CRC305D2GENT171722 on day 3


title: blood_3 [SampleGSM4820548]

tag: metritis


title: MMBC010013NOR


title: WholeBlood_CRC305D2GENT102216_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT102216 on day 7


title: blood_2 [SampleGSM4820547]

tag: milk fever


title: WholeBlood_CRC305D2GENT229224_Day2

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT229224 on day 2


title: WholeBlood_CRC305D2GENT143522_Day7

description: Whole blood gene expression of BOOSTRIX treated participant CRC305D2GENT143522 on day 7


title: blood_1 [SampleGSM4820546]

tag: farm


title: MMBC010012NOR

tag: tissue