title: SS2_16_468_E13

description:
Brain single cell 1228
SS2_16_468_E13_R1.fastq.gz
Brain single cell 1228


title: SS2_16_468_E21

status: Public on Mar 31 2022

type: SRA

city: Uppsala

first: L.

last: He

address: Dag Hammarskjölds Väg 20

country: Sweden

institute: Uppsala University

description:
Brain single cell 1237
SS2_16_468_E21_R1.fastq.gz
Brain single cell 1237

library_source: transcriptomic

data_processing:
The sequencing reads were first aligned to the mouse reference genome GRCm38 (mm10) with tophat (version 2.1.1). The duplicated reads were removed using samtools software (version 0.1.18). The raw read counts for each gene were then calculated using featureCounts function from the Subread package (version 1.4.6-p5)
Genome_build: GRCm38
Supplementary_files_format_and_content: tab-delimited text files include raw counts values for each sample

molecule: total RNA

organism: Mus musculus

source_name: Brain

extract_protocol:
We used transgenic mouse reporter line (SM22-Cre;Rosa26-stop-tdTomato). We chosed to focus our efforts to adult mice brain cells and we chose a methodology based on fluorescence-activated cell sorting (FACS) into 384-well plates followed by the SmartSeq2 methodology for the generation and sequencing of full length polyadenylated cDNAs
Libraries for RNA-seq were prepared by using SMART-seq2 methodology

tag: strain

tag: tissue

value: brain

tag: age

value: adult mice

tag: genotype

tag: notch3 status

value: WT


title: SS2_16_468_E6

description:
Brain single cell 1244
SS2_16_468_E6_R1.fastq.gz
Brain single cell 1244


title: SS2_16_468_E15

description:
Brain single cell 1230
SS2_16_468_E15_R1.fastq.gz
Brain single cell 1230


title: SS2_16_468_E12

description:
Brain single cell 1227
SS2_16_468_E12_R1.fastq.gz
Brain single cell 1227


title: SS2_16_468_E14

description:
Brain single cell 1229
SS2_16_468_E14_R1.fastq.gz
Brain single cell 1229


title: SS2_16_468_F12

description:
Brain single cell 1250
SS2_16_468_F12_R1.fastq.gz
Brain single cell 1250


title: SS2_16_468_E22

description:
Brain single cell 1238
SS2_16_468_E22_R1.fastq.gz
Brain single cell 1238


title: SS2_16_468_D6

description:
Brain single cell 1221
SS2_16_468_D6_R1.fastq.gz
Brain single cell 1221


title: SS2_16_468_E2

description:
Brain single cell 1241
SS2_16_468_E2_R1.fastq.gz
Brain single cell 1241


title: SS2_16_468_E11

description:
Brain single cell 1226
SS2_16_468_E11_R1.fastq.gz
Brain single cell 1226


title: SS2_16_468_D4

description:
Brain single cell 1219
SS2_16_468_D4_R1.fastq.gz
Brain single cell 1219


title: SS2_16_468_E18

description:
Brain single cell 1233
SS2_16_468_E18_R1.fastq.gz
Brain single cell 1233


title: SS2_16_468_D3

description:
Brain single cell 1218
SS2_16_468_D3_R1.fastq.gz
Brain single cell 1218


title: SS2_16_468_D2

description:
Brain single cell 1217
SS2_16_468_D2_R1.fastq.gz
Brain single cell 1217


title: SS2_16_468_D9

description:
Brain single cell 1224
SS2_16_468_D9_R1.fastq.gz
Brain single cell 1224


title: SS2_16_468_D7

description:
Brain single cell 1222
SS2_16_468_D7_R1.fastq.gz
Brain single cell 1222


title: SS2_16_468_D20

description:
Brain single cell 1212
SS2_16_468_D20_R1.fastq.gz
Brain single cell 1212


title: SS2_16_468_D8

description:
Brain single cell 1223
SS2_16_468_D8_R1.fastq.gz
Brain single cell 1223


title: SS2_16_468_D19

description:
Brain single cell 1210
SS2_16_468_D19_R1.fastq.gz
Brain single cell 1210


title: SS2_16_468_E10

description:
Brain single cell 1225
SS2_16_468_E10_R1.fastq.gz
Brain single cell 1225


title: SS2_16_468_D16

description:
Brain single cell 1207
SS2_16_468_D16_R1.fastq.gz
Brain single cell 1207


title: SS2_16_468_D15

description:
Brain single cell 1206
SS2_16_468_D15_R1.fastq.gz
Brain single cell 1206


title: SS2_16_468_D10

description:
Brain single cell 1201
SS2_16_468_D10_R1.fastq.gz
Brain single cell 1201


title: SS2_16_468_D5

description:
Brain single cell 1220
SS2_16_468_D5_R1.fastq.gz
Brain single cell 1220


title: SS2_16_468_D22

description:
Brain single cell 1214
SS2_16_468_D22_R1.fastq.gz
Brain single cell 1214


title: SS2_16_468_D24

description:
Brain single cell 1216
SS2_16_468_D24_R1.fastq.gz
Brain single cell 1216


title: SS2_16_468_C8

description:
Brain single cell 1199
SS2_16_468_C8_R1.fastq.gz
Brain single cell 1199


title: SS2_16_468_C5

description:
Brain single cell 1196
SS2_16_468_C5_R1.fastq.gz
Brain single cell 1196


title: SS2_16_468_C4

description:
Brain single cell 1195
SS2_16_468_C4_R1.fastq.gz
Brain single cell 1195


title: SS2_16_468_D23

description:
Brain single cell 1215
SS2_16_468_D23_R1.fastq.gz
Brain single cell 1215


title: SS2_16_468_D21

description:
Brain single cell 1213
SS2_16_468_D21_R1.fastq.gz
Brain single cell 1213


title: SS2_16_468_D1

description:
Brain single cell 1211
SS2_16_468_D1_R1.fastq.gz
Brain single cell 1211


title: SS2_16_468_D11

description:
Brain single cell 1202
SS2_16_468_D11_R1.fastq.gz
Brain single cell 1202


title: SS2_16_468_D12

description:
Brain single cell 1203
SS2_16_468_D12_R1.fastq.gz
Brain single cell 1203


title: SS2_16_468_C6

description:
Brain single cell 1197
SS2_16_468_C6_R1.fastq.gz
Brain single cell 1197


title: SS2_16_468_D18

description:
Brain single cell 1209
SS2_16_468_D18_R1.fastq.gz
Brain single cell 1209


title: SS2_16_468_D14

description:
Brain single cell 1205
SS2_16_468_D14_R1.fastq.gz
Brain single cell 1205


title: SS2_16_468_C24

description:
Brain single cell 1192
SS2_16_468_C24_R1.fastq.gz
Brain single cell 1192


title: SS2_16_468_C23

description:
Brain single cell 1191
SS2_16_468_C23_R1.fastq.gz
Brain single cell 1191


title: SS2_16_468_D17

description:
Brain single cell 1208
SS2_16_468_D17_R1.fastq.gz
Brain single cell 1208


title: SS2_16_468_C9

description:
Brain single cell 1200
SS2_16_468_C9_R1.fastq.gz
Brain single cell 1200


title: SS2_16_468_D13

description:
Brain single cell 1204
SS2_16_468_D13_R1.fastq.gz
Brain single cell 1204


title: SS2_16_468_C7

description:
Brain single cell 1198
SS2_16_468_C7_R1.fastq.gz
Brain single cell 1198


title: SS2_16_468_C20

description:
Brain single cell 1188
SS2_16_468_C20_R1.fastq.gz
Brain single cell 1188


title: SS2_16_468_C22

description:
Brain single cell 1190
SS2_16_468_C22_R1.fastq.gz
Brain single cell 1190


title: SS2_16_468_C3

description:
Brain single cell 1194
SS2_16_468_C3_R1.fastq.gz
Brain single cell 1194


title: SS2_16_468_C21

description:
Brain single cell 1189
SS2_16_468_C21_R1.fastq.gz
Brain single cell 1189


title: SS2_16_468_C1

description:
Brain single cell 1187
SS2_16_468_C1_R1.fastq.gz
Brain single cell 1187


title: SS2_16_468_C19

description:
Brain single cell 1186
SS2_16_468_C19_R1.fastq.gz
Brain single cell 1186


title: SS2_16_468_C18

description:
Brain single cell 1185
SS2_16_468_C18_R1.fastq.gz
Brain single cell 1185


title: SS2_16_468_C15

description:
Brain single cell 1182
SS2_16_468_C15_R1.fastq.gz
Brain single cell 1182


title: SS2_16_468_C17

description:
Brain single cell 1184
SS2_16_468_C17_R1.fastq.gz
Brain single cell 1184


title: SS2_16_468_C2

description:
Brain single cell 1193
SS2_16_468_C2_R1.fastq.gz
Brain single cell 1193


title: SS2_16_468_C14

description:
Brain single cell 1181
SS2_16_468_C14_R1.fastq.gz
Brain single cell 1181


title: SS2_16_468_C13

description:
Brain single cell 1180
SS2_16_468_C13_R1.fastq.gz
Brain single cell 1180


title: SS2_16_468_C10

description:
Brain single cell 1177
SS2_16_468_C10_R1.fastq.gz
Brain single cell 1177


title: SS2_16_468_C12

description:
Brain single cell 1179
SS2_16_468_C12_R1.fastq.gz
Brain single cell 1179


title: SS2_16_468_C11

description:
Brain single cell 1178
SS2_16_468_C11_R1.fastq.gz
Brain single cell 1178


title: SS2_16_468_B8

description:
Brain single cell 1175
SS2_16_468_B8_R1.fastq.gz
Brain single cell 1175


title: SS2_16_468_B6

description:
Brain single cell 1173
SS2_16_468_B6_R1.fastq.gz
Brain single cell 1173


title: SS2_16_468_B5

description:
Brain single cell 1172
SS2_16_468_B5_R1.fastq.gz
Brain single cell 1172


title: SS2_16_468_B7

description:
Brain single cell 1174
SS2_16_468_B7_R1.fastq.gz
Brain single cell 1174


title: SS2_16_468_B9

description:
Brain single cell 1176
SS2_16_468_B9_R1.fastq.gz
Brain single cell 1176


title: SS2_16_468_B22

description:
Brain single cell 1166
SS2_16_468_B22_R1.fastq.gz
Brain single cell 1166


title: SS2_16_468_B2

description:
Brain single cell 1169
SS2_16_468_B2_R1.fastq.gz
Brain single cell 1169


title: SS2_16_468_B4

description:
Brain single cell 1171
SS2_16_468_B4_R1.fastq.gz
Brain single cell 1171


title: SS2_16_468_B3

description:
Brain single cell 1170
SS2_16_468_B3_R1.fastq.gz
Brain single cell 1170


title: SS2_16_468_B23

description:
Brain single cell 1167
SS2_16_468_B23_R1.fastq.gz
Brain single cell 1167


title: SS2_16_468_B21

description:
Brain single cell 1165
SS2_16_468_B21_R1.fastq.gz
Brain single cell 1165


title: SS2_16_468_B20

description:
Brain single cell 1164
SS2_16_468_B20_R1.fastq.gz
Brain single cell 1164


title: SS2_16_468_B24

description:
Brain single cell 1168
SS2_16_468_B24_R1.fastq.gz
Brain single cell 1168


title: SS2_16_468_B1

description:
Brain single cell 1163
SS2_16_468_B1_R1.fastq.gz
Brain single cell 1163


title: SS2_16_468_B17

description:
Brain single cell 1160
SS2_16_468_B17_R1.fastq.gz
Brain single cell 1160


title: SS2_16_468_B18

description:
Brain single cell 1161
SS2_16_468_B18_R1.fastq.gz
Brain single cell 1161


title: SS2_16_468_B19

description:
Brain single cell 1162
SS2_16_468_B19_R1.fastq.gz
Brain single cell 1162


title: SS2_16_468_C16

description:
Brain single cell 1183
SS2_16_468_C16_R1.fastq.gz
Brain single cell 1183


title: SS2_16_468_B16

description:
Brain single cell 1159
SS2_16_468_B16_R1.fastq.gz
Brain single cell 1159


title: SS2_16_468_B15

description:
Brain single cell 1158
SS2_16_468_B15_R1.fastq.gz
Brain single cell 1158


title: SS2_16_468_B14

description:
Brain single cell 1157
SS2_16_468_B14_R1.fastq.gz
Brain single cell 1157


title: SS2_16_468_B13

description:
Brain single cell 1156
SS2_16_468_B13_R1.fastq.gz
Brain single cell 1156


title: SS2_16_468_B11

description:
Brain single cell 1154
SS2_16_468_B11_R1.fastq.gz
Brain single cell 1154


title: SS2_16_468_B12

description:
Brain single cell 1155
SS2_16_468_B12_R1.fastq.gz
Brain single cell 1155


title: SS2_16_468_B10

description:
Brain single cell 1153
SS2_16_468_B10_R1.fastq.gz
Brain single cell 1153


title: SS2_16_468_A7

description:
Brain single cell 1150
SS2_16_468_A7_R1.fastq.gz
Brain single cell 1150


title: SS2_16_468_A8

description:
Brain single cell 1151
SS2_16_468_A8_R1.fastq.gz
Brain single cell 1151


title: SS2_16_468_A9

description:
Brain single cell 1152
SS2_16_468_A9_R1.fastq.gz
Brain single cell 1152


title: SS2_16_468_A6

description:
Brain single cell 1149
SS2_16_468_A6_R1.fastq.gz
Brain single cell 1149


title: SS2_16_468_A3

description:
Brain single cell 1146
SS2_16_468_A3_R1.fastq.gz
Brain single cell 1146


title: SS2_16_468_A4

description:
Brain single cell 1147
SS2_16_468_A4_R1.fastq.gz
Brain single cell 1147


title: SS2_16_468_A2

description:
Brain single cell 1145
SS2_16_468_A2_R1.fastq.gz
Brain single cell 1145


title: SS2_16_468_A24

description:
Brain single cell 1144
SS2_16_468_A24_R1.fastq.gz
Brain single cell 1144


title: SS2_16_468_A22

description:
Brain single cell 1142
SS2_16_468_A22_R1.fastq.gz
Brain single cell 1142


title: SS2_16_468_A21

description:
Brain single cell 1141
SS2_16_468_A21_R1.fastq.gz
Brain single cell 1141


title: SS2_16_468_A17

description:
Brain single cell 1136
SS2_16_468_A17_R1.fastq.gz
Brain single cell 1136


title: SS2_16_468_A19

description:
Brain single cell 1138
SS2_16_468_A19_R1.fastq.gz
Brain single cell 1138


title: SS2_16_468_A15

description:
Brain single cell 1134
SS2_16_468_A15_R1.fastq.gz
Brain single cell 1134


title: SS2_16_468_A20

description:
Brain single cell 1140
SS2_16_468_A20_R1.fastq.gz
Brain single cell 1140


title: SS2_16_468_A12

description:
Brain single cell 1131
SS2_16_468_A12_R1.fastq.gz
Brain single cell 1131


title: SS2_16_468_A14

description:
Brain single cell 1133
SS2_16_468_A14_R1.fastq.gz
Brain single cell 1133


title: SS2_16_468_A1

description:
Brain single cell 1139
SS2_16_468_A1_R1.fastq.gz
Brain single cell 1139


title: SS2_16_468_A16

description:
Brain single cell 1135
SS2_16_468_A16_R1.fastq.gz
Brain single cell 1135


title: SS2_16_467_P9

description:
Brain single cell 1128
SS2_16_467_P9_R1.fastq.gz
Brain single cell 1128

value: KO


title: SS2_16_468_E20

description:
Brain single cell 1236
SS2_16_468_E20_R1.fastq.gz
Brain single cell 1236


title: SS2_16_467_P7

description:
Brain single cell 1126
SS2_16_467_P7_R1.fastq.gz
Brain single cell 1126


title: SS2_16_468_A10

description:
Brain single cell 1129
SS2_16_468_A10_R1.fastq.gz
Brain single cell 1129


title: SS2_16_467_P6

description:
Brain single cell 1125
SS2_16_467_P6_R1.fastq.gz
Brain single cell 1125


title: SS2_16_467_P8

description:
Brain single cell 1127
SS2_16_467_P8_R1.fastq.gz
Brain single cell 1127


title: SS2_16_467_P4

description:
Brain single cell 1123
SS2_16_467_P4_R1.fastq.gz
Brain single cell 1123


title: SS2_16_468_A5

description:
Brain single cell 1148
SS2_16_468_A5_R1.fastq.gz
Brain single cell 1148


title: SS2_16_468_A23

description:
Brain single cell 1143
SS2_16_468_A23_R1.fastq.gz
Brain single cell 1143


title: SS2_16_467_P22

description:
Brain single cell 1120
SS2_16_467_P22_R1.fastq.gz
Brain single cell 1120


title: SS2_16_467_P20

description:
Brain single cell 1118
SS2_16_467_P20_R1.fastq.gz
Brain single cell 1118


title: SS2_16_467_P19

description:
Brain single cell 1116
SS2_16_467_P19_R1.fastq.gz
Brain single cell 1116


title: SS2_16_468_A13

description:
Brain single cell 1132
SS2_16_468_A13_R1.fastq.gz
Brain single cell 1132


title: SS2_16_468_A18

description:
Brain single cell 1137
SS2_16_468_A18_R1.fastq.gz
Brain single cell 1137


title: SS2_16_467_P21

description:
Brain single cell 1119
SS2_16_467_P21_R1.fastq.gz
Brain single cell 1119


title: SS2_16_044_C11

description:
Brain single cell 428
SS2_16_044_C11_R1.fastq.gz
Brain single cell 428


title: SS2_16_467_P13

description:
Brain single cell 1111
SS2_16_467_P13_R1.fastq.gz
Brain single cell 1111


title: SS2_16_467_P16

description:
Brain single cell 1113
SS2_16_467_P16_R1.fastq.gz
Brain single cell 1113


title: SS2_16_467_P18

description:
Brain single cell 1115
SS2_16_467_P18_R1.fastq.gz
Brain single cell 1115


title: SS2_16_044_C10

description:
Brain single cell 427
SS2_16_044_C10_R1.fastq.gz
Brain single cell 427


title: SS2_16_467_P17

description:
Brain single cell 1114
SS2_16_467_P17_R1.fastq.gz
Brain single cell 1114


title: SS2_16_467_P1

description:
Brain single cell 1117
SS2_16_467_P1_R1.fastq.gz
Brain single cell 1117


title: SS2_16_468_A11

description:
Brain single cell 1130
SS2_16_468_A11_R1.fastq.gz
Brain single cell 1130


title: SS2_16_467_P14

description:
Brain single cell 1112
SS2_16_467_P14_R1.fastq.gz
Brain single cell 1112


title: SS2_16_044_B6

description:
Brain single cell 423
SS2_16_044_B6_R1.fastq.gz
Brain single cell 423


title: SS2_16_044_B2

description:
Brain single cell 419
SS2_16_044_B2_R1.fastq.gz
Brain single cell 419


title: SS2_16_044_B8

description:
Brain single cell 425
SS2_16_044_B8_R1.fastq.gz
Brain single cell 425


title: SS2_16_044_B4

description:
Brain single cell 421
SS2_16_044_B4_R1.fastq.gz
Brain single cell 421


title: SS2_16_044_B23

description:
Brain single cell 417
SS2_16_044_B23_R1.fastq.gz
Brain single cell 417


title: SS2_16_044_B22

description:
Brain single cell 416
SS2_16_044_B22_R1.fastq.gz
Brain single cell 416


title: SS2_16_044_B5

description:
Brain single cell 422
SS2_16_044_B5_R1.fastq.gz
Brain single cell 422


title: SS2_16_467_P5

description:
Brain single cell 1124
SS2_16_467_P5_R1.fastq.gz
Brain single cell 1124


title: SS2_16_044_B21

description:
Brain single cell 415
SS2_16_044_B21_R1.fastq.gz
Brain single cell 415


title: SS2_16_467_P3

description:
Brain single cell 1122
SS2_16_467_P3_R1.fastq.gz
Brain single cell 1122


title: SS2_16_044_B20

description:
Brain single cell 414
SS2_16_044_B20_R1.fastq.gz
Brain single cell 414


title: SS2_16_467_P2

description:
Brain single cell 1121
SS2_16_467_P2_R1.fastq.gz
Brain single cell 1121


title: SS2_16_044_B24

description:
Brain single cell 418
SS2_16_044_B24_R1.fastq.gz
Brain single cell 418


title: SS2_16_044_B9

description:
Brain single cell 426
SS2_16_044_B9_R1.fastq.gz
Brain single cell 426


title: SS2_16_044_B7

description:
Brain single cell 424
SS2_16_044_B7_R1.fastq.gz
Brain single cell 424


title: SS2_16_044_B1

description:
Brain single cell 413
SS2_16_044_B1_R1.fastq.gz
Brain single cell 413


title: SS2_16_044_B18

description:
Brain single cell 411
SS2_16_044_B18_R1.fastq.gz
Brain single cell 411


title: SS2_16_044_B19

description:
Brain single cell 412
SS2_16_044_B19_R1.fastq.gz
Brain single cell 412


title: SS2_16_044_B17

description:
Brain single cell 410
SS2_16_044_B17_R1.fastq.gz
Brain single cell 410


title: SS2_16_044_B3

description:
Brain single cell 420
SS2_16_044_B3_R1.fastq.gz
Brain single cell 420


title: SS2_16_044_B12

description:
Brain single cell 405
SS2_16_044_B12_R1.fastq.gz
Brain single cell 405


title: SS2_16_044_B16

description:
Brain single cell 409
SS2_16_044_B16_R1.fastq.gz
Brain single cell 409


title: SS2_16_044_A6

description:
Brain single cell 399
SS2_16_044_A6_R1.fastq.gz
Brain single cell 399


title: SS2_16_044_B13

description:
Brain single cell 406
SS2_16_044_B13_R1.fastq.gz
Brain single cell 406


title: SS2_16_044_B15

description:
Brain single cell 408
SS2_16_044_B15_R1.fastq.gz
Brain single cell 408


title: SS2_16_044_B10

description:
Brain single cell 403
SS2_16_044_B10_R1.fastq.gz
Brain single cell 403


title: SS2_16_044_A7

description:
Brain single cell 400
SS2_16_044_A7_R1.fastq.gz
Brain single cell 400


title: SS2_16_044_A3

description:
Brain single cell 396
SS2_16_044_A3_R1.fastq.gz
Brain single cell 396


title: SS2_16_044_B11

description:
Brain single cell 404
SS2_16_044_B11_R1.fastq.gz
Brain single cell 404


title: SS2_16_044_A5

description:
Brain single cell 398
SS2_16_044_A5_R1.fastq.gz
Brain single cell 398


title: SS2_16_044_A8

description:
Brain single cell 401
SS2_16_044_A8_R1.fastq.gz
Brain single cell 401


title: SS2_16_044_A24

description:
Brain single cell 394
SS2_16_044_A24_R1.fastq.gz
Brain single cell 394


title: SS2_16_044_A4

description:
Brain single cell 397
SS2_16_044_A4_R1.fastq.gz
Brain single cell 397


title: SS2_16_044_A21

description:
Brain single cell 391
SS2_16_044_A21_R1.fastq.gz
Brain single cell 391


title: SS2_16_044_A2

description:
Brain single cell 395
SS2_16_044_A2_R1.fastq.gz
Brain single cell 395


title: SS2_16_044_A22

description:
Brain single cell 392
SS2_16_044_A22_R1.fastq.gz
Brain single cell 392


title: SS2_16_044_A23

description:
Brain single cell 393
SS2_16_044_A23_R1.fastq.gz
Brain single cell 393


title: SS2_16_044_A20

description:
Brain single cell 390
SS2_16_044_A20_R1.fastq.gz
Brain single cell 390


title: SS2_16_044_A1

description:
Brain single cell 389
SS2_16_044_A1_R1.fastq.gz
Brain single cell 389


title: SS2_16_044_A19

description:
Brain single cell 388
SS2_16_044_A19_R1.fastq.gz
Brain single cell 388


title: SS2_16_044_A18

description:
Brain single cell 387
SS2_16_044_A18_R1.fastq.gz
Brain single cell 387


title: SS2_16_044_A9

description:
Brain single cell 402
SS2_16_044_A9_R1.fastq.gz
Brain single cell 402


title: SS2_16_044_B14

description:
Brain single cell 407
SS2_16_044_B14_R1.fastq.gz
Brain single cell 407


title: SS2_16_044_A17

description:
Brain single cell 386
SS2_16_044_A17_R1.fastq.gz
Brain single cell 386


title: SS2_16_044_A15

description:
Brain single cell 384
SS2_16_044_A15_R1.fastq.gz
Brain single cell 384


title: SS2_16_044_A16

description:
Brain single cell 385
SS2_16_044_A16_R1.fastq.gz
Brain single cell 385


title: SS2_16_044_A14

description:
Brain single cell 383
SS2_16_044_A14_R1.fastq.gz
Brain single cell 383


title: SS2_16_044_A13

description:
Brain single cell 382
SS2_16_044_A13_R1.fastq.gz
Brain single cell 382


title: SS2_16_044_A11

description:
Brain single cell 380
SS2_16_044_A11_R1.fastq.gz
Brain single cell 380


title: SS2_16_044_A12

description:
Brain single cell 381
SS2_16_044_A12_R1.fastq.gz
Brain single cell 381


title: SS2_16_043_P8

description:
Brain single cell 377
SS2_16_043_P8_R1.fastq.gz
Brain single cell 377


title: SS2_16_043_P7

description:
Brain single cell 376
SS2_16_043_P7_R1.fastq.gz
Brain single cell 376


title: SS2_16_043_P6

description:
Brain single cell 375
SS2_16_043_P6_R1.fastq.gz
Brain single cell 375


title: SS2_16_043_P2

description:
Brain single cell 371
SS2_16_043_P2_R1.fastq.gz
Brain single cell 371


title: SS2_16_043_P3

description:
Brain single cell 372
SS2_16_043_P3_R1.fastq.gz
Brain single cell 372


title: SS2_16_043_P20

description:
Brain single cell 368
SS2_16_043_P20_R1.fastq.gz
Brain single cell 368


title: SS2_16_043_P22

description:
Brain single cell 370
SS2_16_043_P22_R1.fastq.gz
Brain single cell 370


title: SS2_16_043_P21

description:
Brain single cell 369
SS2_16_043_P21_R1.fastq.gz
Brain single cell 369


title: SS2_16_043_P1

description:
Brain single cell 367
SS2_16_043_P1_R1.fastq.gz
Brain single cell 367


title: SS2_16_043_P19

description:
Brain single cell 366
SS2_16_043_P19_R1.fastq.gz
Brain single cell 366


title: SS2_16_043_P18

description:
Brain single cell 365
SS2_16_043_P18_R1.fastq.gz
Brain single cell 365


title: SS2_16_043_P17

description:
Brain single cell 364
SS2_16_043_P17_R1.fastq.gz
Brain single cell 364


title: SS2_16_043_P15

description:
Brain single cell 362
SS2_16_043_P15_R1.fastq.gz
Brain single cell 362


title: SS2_16_043_P14

description:
Brain single cell 361
SS2_16_043_P14_R1.fastq.gz
Brain single cell 361


title: SS2_16_043_P13

description:
Brain single cell 360
SS2_16_043_P13_R1.fastq.gz
Brain single cell 360


title: SS2_16_043_P16

description:
Brain single cell 363
SS2_16_043_P16_R1.fastq.gz
Brain single cell 363


title: SS2_16_043_P12

description:
Brain single cell 359
SS2_16_043_P12_R1.fastq.gz
Brain single cell 359


title: SS2_16_043_P11

description:
Brain single cell 358
SS2_16_043_P11_R1.fastq.gz
Brain single cell 358


title: SS2_16_043_P9

description:
Brain single cell 378
SS2_16_043_P9_R1.fastq.gz
Brain single cell 378


title: SS2_16_043_O9

description:
Brain single cell 356
SS2_16_043_O9_R1.fastq.gz
Brain single cell 356


title: SS2_16_043_O7

description:
Brain single cell 355
SS2_16_043_O7_R1.fastq.gz
Brain single cell 355


title: SS2_16_043_O6

description:
Brain single cell 354
SS2_16_043_O6_R1.fastq.gz
Brain single cell 354


title: SS2_16_043_P4

description:
Brain single cell 373
SS2_16_043_P4_R1.fastq.gz
Brain single cell 373


title: SS2_16_044_A10

description:
Brain single cell 379
SS2_16_044_A10_R1.fastq.gz
Brain single cell 379


title: SS2_16_043_P5

description:
Brain single cell 374
SS2_16_043_P5_R1.fastq.gz
Brain single cell 374


title: SS2_16_043_P10

description:
Brain single cell 357
SS2_16_043_P10_R1.fastq.gz
Brain single cell 357


title: SS2_16_043_O4

description:
Brain single cell 352
SS2_16_043_O4_R1.fastq.gz
Brain single cell 352


title: SS2_16_043_O3

description:
Brain single cell 351
SS2_16_043_O3_R1.fastq.gz
Brain single cell 351


title: SS2_16_043_O5

description:
Brain single cell 353
SS2_16_043_O5_R1.fastq.gz
Brain single cell 353


title: SS2_16_043_O24

description:
Brain single cell 349
SS2_16_043_O24_R1.fastq.gz
Brain single cell 349


title: SS2_16_043_O22

description:
Brain single cell 347
SS2_16_043_O22_R1.fastq.gz
Brain single cell 347


title: SS2_16_043_O23

description:
Brain single cell 348
SS2_16_043_O23_R1.fastq.gz
Brain single cell 348


title: SS2_16_043_O21

description:
Brain single cell 346
SS2_16_043_O21_R1.fastq.gz
Brain single cell 346


title: SS2_16_043_O2

description:
Brain single cell 350
SS2_16_043_O2_R1.fastq.gz
Brain single cell 350


title: SS2_16_043_O19

description:
Brain single cell 343
SS2_16_043_O19_R1.fastq.gz
Brain single cell 343


title: SS2_16_043_O18

description:
Brain single cell 342
SS2_16_043_O18_R1.fastq.gz
Brain single cell 342


title: SS2_16_043_O1

description:
Brain single cell 344
SS2_16_043_O1_R1.fastq.gz
Brain single cell 344


title: SS2_16_043_O16

description:
Brain single cell 340
SS2_16_043_O16_R1.fastq.gz
Brain single cell 340


title: SS2_16_043_O20

description:
Brain single cell 345
SS2_16_043_O20_R1.fastq.gz
Brain single cell 345


title: SS2_16_043_O15

description:
Brain single cell 339
SS2_16_043_O15_R1.fastq.gz
Brain single cell 339


title: SS2_16_043_O12

description:
Brain single cell 336
SS2_16_043_O12_R1.fastq.gz
Brain single cell 336


title: SS2_16_043_O14

description:
Brain single cell 338
SS2_16_043_O14_R1.fastq.gz
Brain single cell 338


title: SS2_16_043_O11

description:
Brain single cell 335
SS2_16_043_O11_R1.fastq.gz
Brain single cell 335


title: SS2_16_043_O10

description:
Brain single cell 334
SS2_16_043_O10_R1.fastq.gz
Brain single cell 334


title: SS2_16_043_N9

description:
Brain single cell 333
SS2_16_043_N9_R1.fastq.gz
Brain single cell 333


title: SS2_16_043_O17

description:
Brain single cell 341
SS2_16_043_O17_R1.fastq.gz
Brain single cell 341


title: SS2_16_043_O13

description:
Brain single cell 337
SS2_16_043_O13_R1.fastq.gz
Brain single cell 337


title: SS2_16_043_N8

description:
Brain single cell 332
SS2_16_043_N8_R1.fastq.gz
Brain single cell 332


title: SS2_16_043_N4

description:
Brain single cell 328
SS2_16_043_N4_R1.fastq.gz
Brain single cell 328


title: SS2_16_043_N7

description:
Brain single cell 331
SS2_16_043_N7_R1.fastq.gz
Brain single cell 331


title: SS2_16_043_N5

description:
Brain single cell 329
SS2_16_043_N5_R1.fastq.gz
Brain single cell 329


title: SS2_16_043_N2

description:
Brain single cell 326
SS2_16_043_N2_R1.fastq.gz
Brain single cell 326


title: SS2_16_043_N3

description:
Brain single cell 327
SS2_16_043_N3_R1.fastq.gz
Brain single cell 327


title: SS2_16_043_N24

description:
Brain single cell 325
SS2_16_043_N24_R1.fastq.gz
Brain single cell 325


title: SS2_16_043_N23

description:
Brain single cell 324
SS2_16_043_N23_R1.fastq.gz
Brain single cell 324


title: SS2_16_043_N6

description:
Brain single cell 330
SS2_16_043_N6_R1.fastq.gz
Brain single cell 330


title: SS2_16_043_N22

description:
Brain single cell 323
SS2_16_043_N22_R1.fastq.gz
Brain single cell 323


title: SS2_16_043_N21

description:
Brain single cell 322
SS2_16_043_N21_R1.fastq.gz
Brain single cell 322


title: SS2_16_043_N1

description:
Brain single cell 320
SS2_16_043_N1_R1.fastq.gz
Brain single cell 320


title: SS2_16_043_N20

description:
Brain single cell 321
SS2_16_043_N20_R1.fastq.gz
Brain single cell 321


title: SS2_16_043_N19

description:
Brain single cell 319
SS2_16_043_N19_R1.fastq.gz
Brain single cell 319


title: SS2_16_043_N17

description:
Brain single cell 317
SS2_16_043_N17_R1.fastq.gz
Brain single cell 317


title: SS2_16_043_N15

description:
Brain single cell 315
SS2_16_043_N15_R1.fastq.gz
Brain single cell 315


title: SS2_16_043_N16

description:
Brain single cell 316
SS2_16_043_N16_R1.fastq.gz
Brain single cell 316


title: SS2_16_043_N14

description:
Brain single cell 314
SS2_16_043_N14_R1.fastq.gz
Brain single cell 314


title: SS2_16_043_N13

description:
Brain single cell 313
SS2_16_043_N13_R1.fastq.gz
Brain single cell 313


title: SS2_16_043_N12

description:
Brain single cell 312
SS2_16_043_N12_R1.fastq.gz
Brain single cell 312


title: SS2_16_043_N11

description:
Brain single cell 311
SS2_16_043_N11_R1.fastq.gz
Brain single cell 311


title: SS2_16_043_N10

description:
Brain single cell 310
SS2_16_043_N10_R1.fastq.gz
Brain single cell 310


title: SS2_16_043_M7

description:
Brain single cell 307
SS2_16_043_M7_R1.fastq.gz
Brain single cell 307


title: SS2_16_043_M8

description:
Brain single cell 308
SS2_16_043_M8_R1.fastq.gz
Brain single cell 308


title: SS2_16_043_M6

description:
Brain single cell 306
SS2_16_043_M6_R1.fastq.gz
Brain single cell 306


title: SS2_16_043_M9

description:
Brain single cell 309
SS2_16_043_M9_R1.fastq.gz
Brain single cell 309


title: SS2_16_043_M5

description:
Brain single cell 305
SS2_16_043_M5_R1.fastq.gz
Brain single cell 305


title: SS2_16_043_M4

description:
Brain single cell 304
SS2_16_043_M4_R1.fastq.gz
Brain single cell 304


title: SS2_16_043_M23

description:
Brain single cell 300
SS2_16_043_M23_R1.fastq.gz
Brain single cell 300


title: SS2_16_043_M2

description:
Brain single cell 302
SS2_16_043_M2_R1.fastq.gz
Brain single cell 302


title: SS2_16_043_M3

description:
Brain single cell 303
SS2_16_043_M3_R1.fastq.gz
Brain single cell 303


title: SS2_16_043_M21

description:
Brain single cell 298
SS2_16_043_M21_R1.fastq.gz
Brain single cell 298


title: SS2_16_043_M1

description:
Brain single cell 296
SS2_16_043_M1_R1.fastq.gz
Brain single cell 296


title: SS2_16_043_M19

description:
Brain single cell 295
SS2_16_043_M19_R1.fastq.gz
Brain single cell 295


title: SS2_16_043_M20

description:
Brain single cell 297
SS2_16_043_M20_R1.fastq.gz
Brain single cell 297


title: SS2_16_043_M18

description:
Brain single cell 294
SS2_16_043_M18_R1.fastq.gz
Brain single cell 294


title: SS2_16_043_M16

description:
Brain single cell 292
SS2_16_043_M16_R1.fastq.gz
Brain single cell 292


title: SS2_16_043_M24

description:
Brain single cell 301
SS2_16_043_M24_R1.fastq.gz
Brain single cell 301


title: SS2_16_043_N18

description:
Brain single cell 318
SS2_16_043_N18_R1.fastq.gz
Brain single cell 318


title: SS2_16_043_M12

description:
Brain single cell 288
SS2_16_043_M12_R1.fastq.gz
Brain single cell 288


title: SS2_16_043_M17

description:
Brain single cell 293
SS2_16_043_M17_R1.fastq.gz
Brain single cell 293


title: SS2_16_043_M14

description:
Brain single cell 290
SS2_16_043_M14_R1.fastq.gz
Brain single cell 290


title: SS2_16_043_M11

description:
Brain single cell 287
SS2_16_043_M11_R1.fastq.gz
Brain single cell 287


title: SS2_16_043_M10

description:
Brain single cell 286
SS2_16_043_M10_R1.fastq.gz
Brain single cell 286


title: SS2_16_043_L8

description:
Brain single cell 284
SS2_16_043_L8_R1.fastq.gz
Brain single cell 284


title: SS2_16_043_M13

description:
Brain single cell 289
SS2_16_043_M13_R1.fastq.gz
Brain single cell 289


title: SS2_16_043_L7

description:
Brain single cell 283
SS2_16_043_L7_R1.fastq.gz
Brain single cell 283


title: SS2_16_043_L9

description:
Brain single cell 285
SS2_16_043_L9_R1.fastq.gz
Brain single cell 285


title: SS2_16_043_L6

description:
Brain single cell 282
SS2_16_043_L6_R1.fastq.gz
Brain single cell 282


title: SS2_16_043_M22

description:
Brain single cell 299
SS2_16_043_M22_R1.fastq.gz
Brain single cell 299


title: SS2_16_043_L2

description:
Brain single cell 278
SS2_16_043_L2_R1.fastq.gz
Brain single cell 278


title: SS2_16_043_L23

description:
Brain single cell 276
SS2_16_043_L23_R1.fastq.gz
Brain single cell 276


title: SS2_16_043_L3

description:
Brain single cell 279
SS2_16_043_L3_R1.fastq.gz
Brain single cell 279


title: SS2_16_043_L24

description:
Brain single cell 277
SS2_16_043_L24_R1.fastq.gz
Brain single cell 277


title: SS2_16_043_L22

description:
Brain single cell 275
SS2_16_043_L22_R1.fastq.gz
Brain single cell 275


title: SS2_16_043_L21

description:
Brain single cell 274
SS2_16_043_L21_R1.fastq.gz
Brain single cell 274


title: SS2_16_043_L18

description:
Brain single cell 270
SS2_16_043_L18_R1.fastq.gz
Brain single cell 270


title: SS2_16_043_L1

description:
Brain single cell 272
SS2_16_043_L1_R1.fastq.gz
Brain single cell 272


title: SS2_16_043_L4

description:
Brain single cell 280
SS2_16_043_L4_R1.fastq.gz
Brain single cell 280


title: SS2_16_043_L20

description:
Brain single cell 273
SS2_16_043_L20_R1.fastq.gz
Brain single cell 273


title: SS2_16_043_L17

description:
Brain single cell 269
SS2_16_043_L17_R1.fastq.gz
Brain single cell 269


title: SS2_16_043_L15

description:
Brain single cell 267
SS2_16_043_L15_R1.fastq.gz
Brain single cell 267


title: SS2_16_043_L19

description:
Brain single cell 271
SS2_16_043_L19_R1.fastq.gz
Brain single cell 271


title: SS2_16_043_M15

description:
Brain single cell 291
SS2_16_043_M15_R1.fastq.gz
Brain single cell 291


title: SS2_16_043_L16

description:
Brain single cell 268
SS2_16_043_L16_R1.fastq.gz
Brain single cell 268


title: SS2_16_043_L14

description:
Brain single cell 266
SS2_16_043_L14_R1.fastq.gz
Brain single cell 266


title: SS2_16_043_L13

description:
Brain single cell 265
SS2_16_043_L13_R1.fastq.gz
Brain single cell 265


title: SS2_16_043_L12

description:
Brain single cell 264
SS2_16_043_L12_R1.fastq.gz
Brain single cell 264


title: SS2_16_043_L5

description:
Brain single cell 281
SS2_16_043_L5_R1.fastq.gz
Brain single cell 281


title: SS2_16_043_L11

description:
Brain single cell 263
SS2_16_043_L11_R1.fastq.gz
Brain single cell 263


title: SS2_16_043_K7

description:
Brain single cell 259
SS2_16_043_K7_R1.fastq.gz
Brain single cell 259


title: SS2_16_043_K9

description:
Brain single cell 261
SS2_16_043_K9_R1.fastq.gz
Brain single cell 261


title: SS2_16_043_L10

description:
Brain single cell 262
SS2_16_043_L10_R1.fastq.gz
Brain single cell 262


title: SS2_16_043_K6

description:
Brain single cell 258
SS2_16_043_K6_R1.fastq.gz
Brain single cell 258


title: SS2_16_043_K2

description:
Brain single cell 254
SS2_16_043_K2_R1.fastq.gz
Brain single cell 254


title: SS2_16_043_K5

description:
Brain single cell 257
SS2_16_043_K5_R1.fastq.gz
Brain single cell 257


title: SS2_16_043_K24

description:
Brain single cell 253
SS2_16_043_K24_R1.fastq.gz
Brain single cell 253


title: SS2_16_043_K3

description:
Brain single cell 255
SS2_16_043_K3_R1.fastq.gz
Brain single cell 255


title: SS2_16_043_K23

description:
Brain single cell 252
SS2_16_043_K23_R1.fastq.gz
Brain single cell 252


title: SS2_16_043_K4

description:
Brain single cell 256
SS2_16_043_K4_R1.fastq.gz
Brain single cell 256


title: SS2_16_043_K19

description:
Brain single cell 247
SS2_16_043_K19_R1.fastq.gz
Brain single cell 247


title: SS2_16_043_K18

description:
Brain single cell 246
SS2_16_043_K18_R1.fastq.gz
Brain single cell 246


title: SS2_16_043_K1

description:
Brain single cell 248
SS2_16_043_K1_R1.fastq.gz
Brain single cell 248


title: SS2_16_043_K17

description:
Brain single cell 245
SS2_16_043_K17_R1.fastq.gz
Brain single cell 245


title: SS2_16_043_K8

description:
Brain single cell 260
SS2_16_043_K8_R1.fastq.gz
Brain single cell 260


title: SS2_16_043_K16

description:
Brain single cell 244
SS2_16_043_K16_R1.fastq.gz
Brain single cell 244


title: SS2_16_043_K13

description:
Brain single cell 241
SS2_16_043_K13_R1.fastq.gz
Brain single cell 241


title: SS2_16_043_K21

description:
Brain single cell 250
SS2_16_043_K21_R1.fastq.gz
Brain single cell 250


title: SS2_16_043_K15

description:
Brain single cell 243
SS2_16_043_K15_R1.fastq.gz
Brain single cell 243


title: SS2_16_043_K14

description:
Brain single cell 242
SS2_16_043_K14_R1.fastq.gz
Brain single cell 242


title: SS2_16_043_J8

description:
Brain single cell 236
SS2_16_043_J8_R1.fastq.gz
Brain single cell 236


title: SS2_16_043_J9

description:
Brain single cell 237
SS2_16_043_J9_R1.fastq.gz
Brain single cell 237


title: SS2_16_043_K10

description:
Brain single cell 238
SS2_16_043_K10_R1.fastq.gz
Brain single cell 238


title: SS2_16_043_K12

description:
Brain single cell 240
SS2_16_043_K12_R1.fastq.gz
Brain single cell 240


title: SS2_16_043_K11

description:
Brain single cell 239
SS2_16_043_K11_R1.fastq.gz
Brain single cell 239


title: SS2_16_043_J7

description:
Brain single cell 235
SS2_16_043_J7_R1.fastq.gz
Brain single cell 235


title: SS2_16_043_J5

description:
Brain single cell 233
SS2_16_043_J5_R1.fastq.gz
Brain single cell 233


title: SS2_16_043_J6

description:
Brain single cell 234
SS2_16_043_J6_R1.fastq.gz
Brain single cell 234


title: SS2_16_043_J24

description:
Brain single cell 230
SS2_16_043_J24_R1.fastq.gz
Brain single cell 230


title: SS2_16_043_J4

description:
Brain single cell 232
SS2_16_043_J4_R1.fastq.gz
Brain single cell 232


title: SS2_16_043_J23

description:
Brain single cell 229
SS2_16_043_J23_R1.fastq.gz
Brain single cell 229


title: SS2_16_043_K22

description:
Brain single cell 251
SS2_16_043_K22_R1.fastq.gz
Brain single cell 251


title: SS2_16_043_J2

description:
Brain single cell 231
SS2_16_043_J2_R1.fastq.gz
Brain single cell 231


title: SS2_16_043_K20

description:
Brain single cell 249
SS2_16_043_K20_R1.fastq.gz
Brain single cell 249


title: SS2_16_043_J20

description:
Brain single cell 226
SS2_16_043_J20_R1.fastq.gz
Brain single cell 226


title: SS2_16_043_J22

description:
Brain single cell 228
SS2_16_043_J22_R1.fastq.gz
Brain single cell 228


title: SS2_16_043_J1

description:
Brain single cell 225
SS2_16_043_J1_R1.fastq.gz
Brain single cell 225


title: SS2_16_043_J18

description:
Brain single cell 223
SS2_16_043_J18_R1.fastq.gz
Brain single cell 223


title: SS2_16_043_J16

description:
Brain single cell 221
SS2_16_043_J16_R1.fastq.gz
Brain single cell 221


title: SS2_16_043_J14

description:
Brain single cell 219
SS2_16_043_J14_R1.fastq.gz
Brain single cell 219


title: SS2_16_043_J15

description:
Brain single cell 220
SS2_16_043_J15_R1.fastq.gz
Brain single cell 220


title: SS2_16_043_J17

description:
Brain single cell 222
SS2_16_043_J17_R1.fastq.gz
Brain single cell 222


title: SS2_16_043_J13

description:
Brain single cell 218
SS2_16_043_J13_R1.fastq.gz
Brain single cell 218


title: SS2_16_043_J12

description:
Brain single cell 217
SS2_16_043_J12_R1.fastq.gz
Brain single cell 217


title: SS2_16_043_I9

description:
Brain single cell 214
SS2_16_043_I9_R1.fastq.gz
Brain single cell 214


title: SS2_16_043_J10

description:
Brain single cell 215
SS2_16_043_J10_R1.fastq.gz
Brain single cell 215


title: SS2_16_043_I8

description:
Brain single cell 213
SS2_16_043_I8_R1.fastq.gz
Brain single cell 213


title: SS2_16_043_J11

description:
Brain single cell 216
SS2_16_043_J11_R1.fastq.gz
Brain single cell 216


title: SS2_16_043_I7

description:
Brain single cell 212
SS2_16_043_I7_R1.fastq.gz
Brain single cell 212


title: SS2_16_043_I6

description:
Brain single cell 211
SS2_16_043_I6_R1.fastq.gz
Brain single cell 211


title: SS2_16_043_I2

description:
Brain single cell 207
SS2_16_043_I2_R1.fastq.gz
Brain single cell 207


title: SS2_16_043_I4

description:
Brain single cell 209
SS2_16_043_I4_R1.fastq.gz
Brain single cell 209


title: SS2_16_043_I3

description:
Brain single cell 208
SS2_16_043_I3_R1.fastq.gz
Brain single cell 208


title: SS2_16_043_I24

description:
Brain single cell 206
SS2_16_043_I24_R1.fastq.gz
Brain single cell 206


title: SS2_16_043_I23

description:
Brain single cell 205
SS2_16_043_I23_R1.fastq.gz
Brain single cell 205


title: SS2_16_043_J21

description:
Brain single cell 227
SS2_16_043_J21_R1.fastq.gz
Brain single cell 227


title: SS2_16_043_I5

description:
Brain single cell 210
SS2_16_043_I5_R1.fastq.gz
Brain single cell 210


title: SS2_16_043_I21

description:
Brain single cell 203
SS2_16_043_I21_R1.fastq.gz
Brain single cell 203


title: SS2_16_043_I1

description:
Brain single cell 201
SS2_16_043_I1_R1.fastq.gz
Brain single cell 201


title: SS2_16_043_J19

description:
Brain single cell 224
SS2_16_043_J19_R1.fastq.gz
Brain single cell 224


title: SS2_16_043_I20

description:
Brain single cell 202
SS2_16_043_I20_R1.fastq.gz
Brain single cell 202


title: SS2_16_043_I18

description:
Brain single cell 199
SS2_16_043_I18_R1.fastq.gz
Brain single cell 199


title: SS2_16_043_I19

description:
Brain single cell 200
SS2_16_043_I19_R1.fastq.gz
Brain single cell 200


title: SS2_16_043_I17

description:
Brain single cell 198
SS2_16_043_I17_R1.fastq.gz
Brain single cell 198


title: SS2_16_043_I14

description:
Brain single cell 195
SS2_16_043_I14_R1.fastq.gz
Brain single cell 195


title: SS2_16_043_I13

description:
Brain single cell 194
SS2_16_043_I13_R1.fastq.gz
Brain single cell 194


title: SS2_16_043_I15

description:
Brain single cell 196
SS2_16_043_I15_R1.fastq.gz
Brain single cell 196


title: SS2_16_043_I12

description:
Brain single cell 193
SS2_16_043_I12_R1.fastq.gz
Brain single cell 193


title: SS2_16_043_I10

description:
Brain single cell 191
SS2_16_043_I10_R1.fastq.gz
Brain single cell 191


title: SS2_16_043_H8

description:
Brain single cell 189
SS2_16_043_H8_R1.fastq.gz
Brain single cell 189


title: SS2_16_043_H7

description:
Brain single cell 188
SS2_16_043_H7_R1.fastq.gz
Brain single cell 188


title: SS2_16_043_H6

description:
Brain single cell 187
SS2_16_043_H6_R1.fastq.gz
Brain single cell 187


title: SS2_16_043_H9

description:
Brain single cell 190
SS2_16_043_H9_R1.fastq.gz
Brain single cell 190


title: SS2_16_043_H5

description:
Brain single cell 186
SS2_16_043_H5_R1.fastq.gz
Brain single cell 186


title: SS2_16_043_H3

description:
Brain single cell 184
SS2_16_043_H3_R1.fastq.gz
Brain single cell 184


title: SS2_16_043_H2

description:
Brain single cell 183
SS2_16_043_H2_R1.fastq.gz
Brain single cell 183


title: SS2_16_043_H4

description:
Brain single cell 185
SS2_16_043_H4_R1.fastq.gz
Brain single cell 185


title: SS2_16_043_H24

description:
Brain single cell 182
SS2_16_043_H24_R1.fastq.gz
Brain single cell 182


title: SS2_16_043_H23

description:
Brain single cell 181
SS2_16_043_H23_R1.fastq.gz
Brain single cell 181


title: SS2_16_043_I22

description:
Brain single cell 204
SS2_16_043_I22_R1.fastq.gz
Brain single cell 204


title: SS2_16_043_H22

description:
Brain single cell 180
SS2_16_043_H22_R1.fastq.gz
Brain single cell 180


title: SS2_16_043_I16

description:
Brain single cell 197
SS2_16_043_I16_R1.fastq.gz
Brain single cell 197


title: SS2_16_043_H1

description:
Brain single cell 177
SS2_16_043_H1_R1.fastq.gz
Brain single cell 177


title: SS2_16_043_H19

description:
Brain single cell 176
SS2_16_043_H19_R1.fastq.gz
Brain single cell 176


title: SS2_16_043_H20

description:
Brain single cell 178
SS2_16_043_H20_R1.fastq.gz
Brain single cell 178


title: SS2_16_043_H18

description:
Brain single cell 175
SS2_16_043_H18_R1.fastq.gz
Brain single cell 175


title: SS2_16_043_H12

description:
Brain single cell 169
SS2_16_043_H12_R1.fastq.gz
Brain single cell 169


title: SS2_16_043_H15

description:
Brain single cell 172
SS2_16_043_H15_R1.fastq.gz
Brain single cell 172


title: SS2_16_043_H17

description:
Brain single cell 174
SS2_16_043_H17_R1.fastq.gz
Brain single cell 174


title: SS2_16_043_H16

description:
Brain single cell 173
SS2_16_043_H16_R1.fastq.gz
Brain single cell 173


title: SS2_16_043_H13

description:
Brain single cell 170
SS2_16_043_H13_R1.fastq.gz
Brain single cell 170


title: SS2_16_043_I11

description:
Brain single cell 192
SS2_16_043_I11_R1.fastq.gz
Brain single cell 192


title: SS2_16_043_H11

description:
Brain single cell 168
SS2_16_043_H11_R1.fastq.gz
Brain single cell 168


title: SS2_16_043_H14

description:
Brain single cell 171
SS2_16_043_H14_R1.fastq.gz
Brain single cell 171


title: SS2_16_043_H10

description:
Brain single cell 167
SS2_16_043_H10_R1.fastq.gz
Brain single cell 167


title: SS2_16_043_G8

description:
Brain single cell 165
SS2_16_043_G8_R1.fastq.gz
Brain single cell 165


title: SS2_16_043_G9

description:
Brain single cell 166
SS2_16_043_G9_R1.fastq.gz
Brain single cell 166


title: SS2_16_043_G7

description:
Brain single cell 164
SS2_16_043_G7_R1.fastq.gz
Brain single cell 164


title: SS2_16_043_G5

description:
Brain single cell 162
SS2_16_043_G5_R1.fastq.gz
Brain single cell 162


title: SS2_16_043_G6

description:
Brain single cell 163
SS2_16_043_G6_R1.fastq.gz
Brain single cell 163


title: SS2_16_043_G3

description:
Brain single cell 160
SS2_16_043_G3_R1.fastq.gz
Brain single cell 160


title: SS2_16_043_G2

description:
Brain single cell 159
SS2_16_043_G2_R1.fastq.gz
Brain single cell 159


title: SS2_16_043_G4

description:
Brain single cell 161
SS2_16_043_G4_R1.fastq.gz
Brain single cell 161


title: SS2_16_043_G23

description:
Brain single cell 157
SS2_16_043_G23_R1.fastq.gz
Brain single cell 157


title: SS2_16_043_G24

description:
Brain single cell 158
SS2_16_043_G24_R1.fastq.gz
Brain single cell 158


title: SS2_16_043_G22

description:
Brain single cell 156
SS2_16_043_G22_R1.fastq.gz
Brain single cell 156


title: SS2_16_043_H21

description:
Brain single cell 179
SS2_16_043_H21_R1.fastq.gz
Brain single cell 179


title: SS2_16_043_G19

description:
Brain single cell 152
SS2_16_043_G19_R1.fastq.gz
Brain single cell 152


title: SS2_16_043_G21

description:
Brain single cell 155
SS2_16_043_G21_R1.fastq.gz
Brain single cell 155


title: SS2_16_043_G20

description:
Brain single cell 154
SS2_16_043_G20_R1.fastq.gz
Brain single cell 154


title: SS2_16_043_G1

description:
Brain single cell 153
SS2_16_043_G1_R1.fastq.gz
Brain single cell 153


title: SS2_16_043_G18

description:
Brain single cell 151
SS2_16_043_G18_R1.fastq.gz
Brain single cell 151


title: SS2_16_043_G16

description:
Brain single cell 149
SS2_16_043_G16_R1.fastq.gz
Brain single cell 149


title: SS2_16_043_G17

description:
Brain single cell 150
SS2_16_043_G17_R1.fastq.gz
Brain single cell 150


title: SS2_16_043_G15

description:
Brain single cell 148
SS2_16_043_G15_R1.fastq.gz
Brain single cell 148


title: SS2_16_043_G13

description:
Brain single cell 146
SS2_16_043_G13_R1.fastq.gz
Brain single cell 146


title: SS2_16_043_G14

description:
Brain single cell 147
SS2_16_043_G14_R1.fastq.gz
Brain single cell 147


title: SS2_16_043_G11

description:
Brain single cell 144
SS2_16_043_G11_R1.fastq.gz
Brain single cell 144


title: SS2_16_043_G10

description:
Brain single cell 143
SS2_16_043_G10_R1.fastq.gz
Brain single cell 143


title: SS2_16_043_F9

description:
Brain single cell 142
SS2_16_043_F9_R1.fastq.gz
Brain single cell 142


title: SS2_16_043_F8

description:
Brain single cell 141
SS2_16_043_F8_R1.fastq.gz
Brain single cell 141


title: SS2_16_043_F6

description:
Brain single cell 139
SS2_16_043_F6_R1.fastq.gz
Brain single cell 139


title: SS2_16_043_F4

description:
Brain single cell 137
SS2_16_043_F4_R1.fastq.gz
Brain single cell 137


title: SS2_16_043_F5

description:
Brain single cell 138
SS2_16_043_F5_R1.fastq.gz
Brain single cell 138


title: SS2_16_043_F3

description:
Brain single cell 136
SS2_16_043_F3_R1.fastq.gz
Brain single cell 136


title: SS2_16_043_F2

description:
Brain single cell 135
SS2_16_043_F2_R1.fastq.gz
Brain single cell 135


title: SS2_16_043_F1

description:
Brain single cell 130
SS2_16_043_F1_R1.fastq.gz
Brain single cell 130


title: SS2_16_043_F20

description:
Brain single cell 131
SS2_16_043_F20_R1.fastq.gz
Brain single cell 131


title: SS2_16_043_F21

description:
Brain single cell 132
SS2_16_043_F21_R1.fastq.gz
Brain single cell 132


title: SS2_16_043_F23

description:
Brain single cell 134
SS2_16_043_F23_R1.fastq.gz
Brain single cell 134


title: SS2_16_043_F18

description:
Brain single cell 128
SS2_16_043_F18_R1.fastq.gz
Brain single cell 128


title: SS2_16_043_F22

description:
Brain single cell 133
SS2_16_043_F22_R1.fastq.gz
Brain single cell 133


title: SS2_16_043_F19

description:
Brain single cell 129
SS2_16_043_F19_R1.fastq.gz
Brain single cell 129


title: SS2_16_043_F17

description:
Brain single cell 127
SS2_16_043_F17_R1.fastq.gz
Brain single cell 127


title: SS2_16_043_F11

description:
Brain single cell 121
SS2_16_043_F11_R1.fastq.gz
Brain single cell 121


title: SS2_16_043_G12

description:
Brain single cell 145
SS2_16_043_G12_R1.fastq.gz
Brain single cell 145


title: SS2_16_043_F12

description:
Brain single cell 122
SS2_16_043_F12_R1.fastq.gz
Brain single cell 122


title: SS2_16_043_F16

description:
Brain single cell 126
SS2_16_043_F16_R1.fastq.gz
Brain single cell 126


title: SS2_16_043_E9

description:
Brain single cell 119
SS2_16_043_E9_R1.fastq.gz
Brain single cell 119


title: SS2_16_043_F13

description:
Brain single cell 123
SS2_16_043_F13_R1.fastq.gz
Brain single cell 123


title: SS2_16_043_F15

description:
Brain single cell 125
SS2_16_043_F15_R1.fastq.gz
Brain single cell 125


title: SS2_16_043_E8

description:
Brain single cell 118
SS2_16_043_E8_R1.fastq.gz
Brain single cell 118


title: SS2_16_043_F14

description:
Brain single cell 124
SS2_16_043_F14_R1.fastq.gz
Brain single cell 124


title: SS2_16_043_E7

description:
Brain single cell 117
SS2_16_043_E7_R1.fastq.gz
Brain single cell 117


title: SS2_16_043_F10

description:
Brain single cell 120
SS2_16_043_F10_R1.fastq.gz
Brain single cell 120


title: SS2_16_043_E5

description:
Brain single cell 115
SS2_16_043_E5_R1.fastq.gz
Brain single cell 115


title: SS2_16_043_E4

description:
Brain single cell 114
SS2_16_043_E4_R1.fastq.gz
Brain single cell 114


title: SS2_16_043_F7

description:
Brain single cell 140
SS2_16_043_F7_R1.fastq.gz
Brain single cell 140


title: SS2_16_043_E24

description:
Brain single cell 111
SS2_16_043_E24_R1.fastq.gz
Brain single cell 111


title: SS2_16_043_E2

description:
Brain single cell 112
SS2_16_043_E2_R1.fastq.gz
Brain single cell 112


title: SS2_16_043_E20

description:
Brain single cell 107
SS2_16_043_E20_R1.fastq.gz
Brain single cell 107


title: SS2_16_043_E22

description:
Brain single cell 109
SS2_16_043_E22_R1.fastq.gz
Brain single cell 109


title: SS2_16_043_E17

description:
Brain single cell 103
SS2_16_043_E17_R1.fastq.gz
Brain single cell 103


title: SS2_16_043_E18

description:
Brain single cell 104
SS2_16_043_E18_R1.fastq.gz
Brain single cell 104


title: SS2_16_043_E19

description:
Brain single cell 105
SS2_16_043_E19_R1.fastq.gz
Brain single cell 105


title: SS2_16_043_E6

description:
Brain single cell 116
SS2_16_043_E6_R1.fastq.gz
Brain single cell 116


title: SS2_16_043_E11

description:
Brain single cell 97
SS2_16_043_E11_R1.fastq.gz
Brain single cell 97


title: SS2_16_043_D5

description:
Brain single cell 91
SS2_16_043_D5_R1.fastq.gz
Brain single cell 91


title: SS2_16_043_E10

description:
Brain single cell 96
SS2_16_043_E10_R1.fastq.gz
Brain single cell 96


title: SS2_16_043_D7

description:
Brain single cell 93
SS2_16_043_D7_R1.fastq.gz
Brain single cell 93


title: SS2_16_043_D4

description:
Brain single cell 90
SS2_16_043_D4_R1.fastq.gz
Brain single cell 90


title: SS2_16_043_D9

description:
Brain single cell 95
SS2_16_043_D9_R1.fastq.gz
Brain single cell 95


title: SS2_16_043_E3

description:
Brain single cell 113
SS2_16_043_E3_R1.fastq.gz
Brain single cell 113


title: SS2_16_043_D6

description:
Brain single cell 92
SS2_16_043_D6_R1.fastq.gz
Brain single cell 92


title: SS2_16_043_D2

description:
Brain single cell 88
SS2_16_043_D2_R1.fastq.gz
Brain single cell 88


title: SS2_16_043_E21

description:
Brain single cell 108
SS2_16_043_E21_R1.fastq.gz
Brain single cell 108


title: SS2_16_043_D3

description:
Brain single cell 89
SS2_16_043_D3_R1.fastq.gz
Brain single cell 89


title: SS2_16_043_D24

description:
Brain single cell 87
SS2_16_043_D24_R1.fastq.gz
Brain single cell 87


title: SS2_16_043_D22

description:
Brain single cell 85
SS2_16_043_D22_R1.fastq.gz
Brain single cell 85


title: SS2_16_043_E23

description:
Brain single cell 110
SS2_16_043_E23_R1.fastq.gz
Brain single cell 110


title: SS2_16_043_D21

description:
Brain single cell 84
SS2_16_043_D21_R1.fastq.gz
Brain single cell 84


title: SS2_16_043_D20

description:
Brain single cell 83
SS2_16_043_D20_R1.fastq.gz
Brain single cell 83


title: SS2_16_043_D23

description:
Brain single cell 86
SS2_16_043_D23_R1.fastq.gz
Brain single cell 86


title: SS2_16_043_D19

description:
Brain single cell 81
SS2_16_043_D19_R1.fastq.gz
Brain single cell 81


title: SS2_16_043_E16

description:
Brain single cell 102
SS2_16_043_E16_R1.fastq.gz
Brain single cell 102


title: SS2_16_043_E15

description:
Brain single cell 101
SS2_16_043_E15_R1.fastq.gz
Brain single cell 101


title: SS2_16_043_D1

description:
Brain single cell 82
SS2_16_043_D1_R1.fastq.gz
Brain single cell 82


title: SS2_16_043_E14

description:
Brain single cell 100
SS2_16_043_E14_R1.fastq.gz
Brain single cell 100


title: SS2_16_043_E1

description:
Brain single cell 106
SS2_16_043_E1_R1.fastq.gz
Brain single cell 106


title: SS2_16_043_E13

description:
Brain single cell 99
SS2_16_043_E13_R1.fastq.gz
Brain single cell 99


title: SS2_16_043_D17

description:
Brain single cell 79
SS2_16_043_D17_R1.fastq.gz
Brain single cell 79


title: SS2_16_043_D15

description:
Brain single cell 77
SS2_16_043_D15_R1.fastq.gz
Brain single cell 77


title: SS2_16_043_D10

description:
Brain single cell 72
SS2_16_043_D10_R1.fastq.gz
Brain single cell 72


title: SS2_16_043_D13

description:
Brain single cell 75
SS2_16_043_D13_R1.fastq.gz
Brain single cell 75


title: SS2_16_043_C9

description:
Brain single cell 71
SS2_16_043_C9_R1.fastq.gz
Brain single cell 71


title: SS2_16_043_D12

description:
Brain single cell 74
SS2_16_043_D12_R1.fastq.gz
Brain single cell 74


title: SS2_16_043_D14

description:
Brain single cell 76
SS2_16_043_D14_R1.fastq.gz
Brain single cell 76


title: SS2_16_043_D11

description:
Brain single cell 73
SS2_16_043_D11_R1.fastq.gz
Brain single cell 73


title: SS2_16_043_C8

description:
Brain single cell 70
SS2_16_043_C8_R1.fastq.gz
Brain single cell 70


title: SS2_16_043_C4

description:
Brain single cell 67
SS2_16_043_C4_R1.fastq.gz
Brain single cell 67


title: SS2_16_043_C22

description:
Brain single cell 62
SS2_16_043_C22_R1.fastq.gz
Brain single cell 62


title: SS2_16_043_C6

description:
Brain single cell 69
SS2_16_043_C6_R1.fastq.gz
Brain single cell 69


title: SS2_16_043_C3

description:
Brain single cell 66
SS2_16_043_C3_R1.fastq.gz
Brain single cell 66


title: SS2_16_043_C5

description:
Brain single cell 68
SS2_16_043_C5_R1.fastq.gz
Brain single cell 68


title: SS2_16_043_C24

description:
Brain single cell 64
SS2_16_043_C24_R1.fastq.gz
Brain single cell 64


title: SS2_16_043_C2

description:
Brain single cell 65
SS2_16_043_C2_R1.fastq.gz
Brain single cell 65


title: SS2_16_043_D18

description:
Brain single cell 80
SS2_16_043_D18_R1.fastq.gz
Brain single cell 80


title: SS2_16_043_C21

description:
Brain single cell 61
SS2_16_043_C21_R1.fastq.gz
Brain single cell 61


title: SS2_16_043_E12

description:
Brain single cell 98
SS2_16_043_E12_R1.fastq.gz
Brain single cell 98


title: SS2_16_043_C23

description:
Brain single cell 63
SS2_16_043_C23_R1.fastq.gz
Brain single cell 63


title: SS2_16_043_C20

description:
Brain single cell 60
SS2_16_043_C20_R1.fastq.gz
Brain single cell 60


title: SS2_16_043_C19

description:
Brain single cell 58
SS2_16_043_C19_R1.fastq.gz
Brain single cell 58


title: SS2_16_043_C15

description:
Brain single cell 54
SS2_16_043_C15_R1.fastq.gz
Brain single cell 54


title: SS2_16_043_C18

description:
Brain single cell 57
SS2_16_043_C18_R1.fastq.gz
Brain single cell 57


title: SS2_16_043_C11

description:
Brain single cell 50
SS2_16_043_C11_R1.fastq.gz
Brain single cell 50


title: SS2_16_043_C14

description:
Brain single cell 53
SS2_16_043_C14_R1.fastq.gz
Brain single cell 53


title: SS2_16_043_D8

description:
Brain single cell 94
SS2_16_043_D8_R1.fastq.gz
Brain single cell 94


title: SS2_16_043_C12

description:
Brain single cell 51
SS2_16_043_C12_R1.fastq.gz
Brain single cell 51


title: SS2_16_043_C13

description:
Brain single cell 52
SS2_16_043_C13_R1.fastq.gz
Brain single cell 52


title: SS2_16_043_B3

description:
Brain single cell 42
SS2_16_043_B3_R1.fastq.gz
Brain single cell 42


title: SS2_16_043_C16

description:
Brain single cell 55
SS2_16_043_C16_R1.fastq.gz
Brain single cell 55


title: SS2_16_043_B5

description:
Brain single cell 44
SS2_16_043_B5_R1.fastq.gz
Brain single cell 44


title: SS2_16_043_B2

description:
Brain single cell 41
SS2_16_043_B2_R1.fastq.gz
Brain single cell 41


title: SS2_16_043_B24

description:
Brain single cell 40
SS2_16_043_B24_R1.fastq.gz
Brain single cell 40


title: SS2_16_043_B8

description:
Brain single cell 47
SS2_16_043_B8_R1.fastq.gz
Brain single cell 47


title: SS2_16_043_C10

description:
Brain single cell 49
SS2_16_043_C10_R1.fastq.gz
Brain single cell 49


title: SS2_16_043_B9

description:
Brain single cell 48
SS2_16_043_B9_R1.fastq.gz
Brain single cell 48


title: SS2_16_043_B4

description:
Brain single cell 43
SS2_16_043_B4_R1.fastq.gz
Brain single cell 43


title: SS2_16_043_B7

description:
Brain single cell 46
SS2_16_043_B7_R1.fastq.gz
Brain single cell 46


title: SS2_16_043_C1

description:
Brain single cell 59
SS2_16_043_C1_R1.fastq.gz
Brain single cell 59


title: SS2_16_043_B19

description:
Brain single cell 34
SS2_16_043_B19_R1.fastq.gz
Brain single cell 34


title: SS2_16_043_B20

description:
Brain single cell 36
SS2_16_043_B20_R1.fastq.gz
Brain single cell 36


title: SS2_16_043_B1

description:
Brain single cell 35
SS2_16_043_B1_R1.fastq.gz
Brain single cell 35


title: SS2_16_043_B21

description:
Brain single cell 37
SS2_16_043_B21_R1.fastq.gz
Brain single cell 37


title: SS2_16_043_B17

description:
Brain single cell 32
SS2_16_043_B17_R1.fastq.gz
Brain single cell 32


title: SS2_16_043_B18

description:
Brain single cell 33
SS2_16_043_B18_R1.fastq.gz
Brain single cell 33


title: SS2_16_043_B14

description:
Brain single cell 29
SS2_16_043_B14_R1.fastq.gz
Brain single cell 29


title: SS2_16_043_C17

description:
Brain single cell 56
SS2_16_043_C17_R1.fastq.gz
Brain single cell 56


title: SS2_16_043_B22

description:
Brain single cell 38
SS2_16_043_B22_R1.fastq.gz
Brain single cell 38


title: SS2_16_043_B13

description:
Brain single cell 28
SS2_16_043_B13_R1.fastq.gz
Brain single cell 28


title: SS2_16_043_B12

description:
Brain single cell 27
SS2_16_043_B12_R1.fastq.gz
Brain single cell 27


title: SS2_16_043_B6

description:
Brain single cell 45
SS2_16_043_B6_R1.fastq.gz
Brain single cell 45


title: SS2_16_043_B23

description:
Brain single cell 39
SS2_16_043_B23_R1.fastq.gz
Brain single cell 39


title: SS2_16_043_B15

description:
Brain single cell 30
SS2_16_043_B15_R1.fastq.gz
Brain single cell 30


title: SS2_16_043_B10

description:
Brain single cell 25
SS2_16_043_B10_R1.fastq.gz
Brain single cell 25


title: SS2_16_043_B11

description:
Brain single cell 26
SS2_16_043_B11_R1.fastq.gz
Brain single cell 26


title: SS2_16_043_B16

description:
Brain single cell 31
SS2_16_043_B16_R1.fastq.gz
Brain single cell 31


title: SS2_16_043_A8

description:
Brain single cell 23
SS2_16_043_A8_R1.fastq.gz
Brain single cell 23


title: SS2_16_043_A7

description:
Brain single cell 22
SS2_16_043_A7_R1.fastq.gz
Brain single cell 22


title: SS2_16_043_A6

description:
Brain single cell 21
SS2_16_043_A6_R1.fastq.gz
Brain single cell 21


title: SS2_16_043_A9

description:
Brain single cell 24
SS2_16_043_A9_R1.fastq.gz
Brain single cell 24


title: SS2_16_043_A5

description:
Brain single cell 20
SS2_16_043_A5_R1.fastq.gz
Brain single cell 20


title: SS2_16_043_A4

description:
Brain single cell 19
SS2_16_043_A4_R1.fastq.gz
Brain single cell 19


title: SS2_16_043_A24

description:
Brain single cell 16
SS2_16_043_A24_R1.fastq.gz
Brain single cell 16


title: SS2_16_043_A21

description:
Brain single cell 13
SS2_16_043_A21_R1.fastq.gz
Brain single cell 13


title: SS2_16_043_A20

description:
Brain single cell 12
SS2_16_043_A20_R1.fastq.gz
Brain single cell 12


title: SS2_16_043_A23

description:
Brain single cell 15
SS2_16_043_A23_R1.fastq.gz
Brain single cell 15


title: SS2_16_043_A2

description:
Brain single cell 17
SS2_16_043_A2_R1.fastq.gz
Brain single cell 17


title: SS2_16_043_A3

description:
Brain single cell 18
SS2_16_043_A3_R1.fastq.gz
Brain single cell 18


title: SS2_16_043_A19

description:
Brain single cell 10
SS2_16_043_A19_R1.fastq.gz
Brain single cell 10


title: SS2_16_043_A17

description:
Brain single cell 8
SS2_16_043_A17_R1.fastq.gz
Brain single cell 8


title: SS2_16_043_A22

description:
Brain single cell 14
SS2_16_043_A22_R1.fastq.gz
Brain single cell 14


title: SS2_16_043_A16

description:
Brain single cell 7
SS2_16_043_A16_R1.fastq.gz
Brain single cell 7


title: SS2_16_043_A18

description:
Brain single cell 9
SS2_16_043_A18_R1.fastq.gz
Brain single cell 9


title: SS2_16_043_A13

description:
Brain single cell 4
SS2_16_043_A13_R1.fastq.gz
Brain single cell 4


title: SS2_16_043_A15

description:
Brain single cell 6
SS2_16_043_A15_R1.fastq.gz
Brain single cell 6


title: SS2_16_043_A1

description:
Brain single cell 11
SS2_16_043_A1_R1.fastq.gz
Brain single cell 11


title: SS2_16_043_A14

description:
Brain single cell 5
SS2_16_043_A14_R1.fastq.gz
Brain single cell 5


title: Old RE + M

city: Lexington

first: Yuan

last: Wen

state: Kentucky

address: 760 Press Ave

country: USA

institute: University of Kentucky

description:
Old rat skeletal muscle mononuclear cell 10X scRNA-seq recovered for 7 days with mechanotherapy every other day post 14 days of hindlimb suspension
OREM4_CKDL200152039-1a-SI_GA_A1_H7VVJBBXX_S2_L004

data_processing:
The reference genome for the rat was downloaded from Ensembl (Rn6 assembly, release 100).
Genome_build: Rn6 Ensembl assembly, release 100
Supplementary_files_format_and_content: The .h5 files are generated from Cell Ranger v4.0.0 after alignment to the appropriate transcriptome.

organism: Rattus norvegicus

source_name: gastrocnemius muscle

growth_protocol: adult and aged male F344/BN rats were randomly assigned to normal ambulatory conditions, recovery for 7 days following 14 days of disuse atrophy, or recovery supplemented with mechanotherapy to the right gastrocnemius muscle.

extract_protocol:
Live mononuclear cells were isolated from the right gastrocnemius muscle as previously described (Liu et al., 2015). Briefly, right gastrocnemius muscle was immersed in wash media (WM; Ham’s F-10 (Gibco, Gaithersburg, Maryland) + 10% Horse serum (Thermo Fisher, Florence, KY) and 1X penicillin/streptomycin (Gibco)) immediately after dissection and minced using sterilized instruments. The minced muscle homogenate was incubated in muscle dissociation media (MDM; WM + 800 U/ml Collagenase II (Gibco)) at 37°C for 1 hr with agitation. The homogenate was pelleted by centrifugation (500g, 5 min) and incubated in fresh MDM supplemented with dispase (11 U/ml; Sigma, St. Louis, MO) at 37°C for 30 min with agitation. The single cell suspension was pelleted by centrifugation (500 g, 5 min), passed through 70- and 40-mm Nylon cell strainers to remove non-cellular material, and placed in a fluorescence-activated cell sorting (FACS) tube containing propidium iodide (PI) and WM to identify dead cells. Isolation of live mononuclear cells was performed by gating out cellular debris using forward/side scatter and with/without PI using an iCyt FACS (Sony Biotechnology, Champaign, IL, USA). The mononuclear cell pellet was washed and resuspended in PBS with 0.04% BSA in accordance with 10X Genomics recommendations (10X Genomics, Pleasanton, CA, USA).
Cells were loaded in the 10X Genomics Chromium Controller to target capture of approximately 10,000 cells per lane using the Single Cell 3’ reagent kit per the manufacturer’s instructions. Libraries were made using version 3.0 chemistry and sequenced on an Illumina HiSeq platform (Novogene, Sacromento, CA), yielding a minimum 200 million reads per sample.

treatment_protocol: Mechanotherapy occurred every other day to the right gastrocnemius muscle for 30 minutes (0.5 Hz, 4.5 N).

value: gastrocnemius muscle

tag: cell type

value: Mononucleated cells

tag: experimental condition

value: Underwent disuse atrophy for 14 days, followed by 7 days of reloading with mechanotherapy to the right gastrocnemius muscle every other day for 30 minutses each bout (4 total bouts, 0.5 Hz, 4.5 N)


title: SS2_16_043_A10

description:
Brain single cell 1
SS2_16_043_A10_R1.fastq.gz
Brain single cell 1


title: SS2_16_043_A11

description:
Brain single cell 2
SS2_16_043_A11_R1.fastq.gz
Brain single cell 2


title: Old WB

description:
Old rat skeletal muscle mononuclear cell 10X scRNA-seq under normal ambulatory conditions
OWBC5_CKDL200164098-1a-SI_GA_C5_HCJVMBBXX_S2_L003

value: Normal ambulation


title: miR-155-let-7a_purification1_0percent

city: Cambridge

first: Sean

middle: E.

last: McGeary

state: MA

address: 455 Main St.

department: Biology

institute: Whitehead Institute / MIT

description:
synthetic RNA library
agorbns_miR-155-let-7a_sitecounts.txt
agorbns_miR-155-let-7a_summed_8mer_mismatch_sitecounts.txt
agorbns_miR-155-let-7a_kds.txt
agorbns_miR-155-let-7a_summed_8mer_mismatch_kds.txt
agorbns_miR-155-let-7a_pairing_and_offset_model_coefficients.txt
agorbns_miR-155-let-7a_pairing_offset_and_mismatch_model_coefficients.txt
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA

data_processing:
Each RBNS sequencing read was used if it satisfied the following criteria: 1) it passed the Illumina chastity filter, as indicated by the presence of the number 1 rather than 0 in the final position of the fastq header line, 2) it did not contain any “N” base calls, 3) it did not contain any positions with a Phred quality score (Q) of B or lower, 4) the sequenced 6-nt sample-multiplexing barcode associated with the read was identical to one of the barcodes used when generating the sequencing library, 5) it did not match either strand of the phi-X genome, and 6) it contained a TGT at either positions 39–41 in the case of the let-7a and miR-1 programmed libraries or 38–40 in the case of the miR-155 programmed library.
Reads were first appended with 5 nt of adapter sequence on either end, and then queried for all site types or 12-nt k-mers relevant to the miRNA used in that AGO-RBNS experiment according to the methods.
Relative KD values are fit from the count data according to the methods.
Pairing, offset, and mismatch model coefficients are fit using the log(KD fold change) values according to the methods.
KD fold-change values associated with mismatched-, bulged-, and deleted-nucleotide sites were calculated according to the methods.
Genome_build: NA
Supplementary_files_format_and_content: For each of the seven miRNAs in this study, there are six tab-delimited text files, giving 1.) the site counts when combining the counts associated with the 18 8mer-mismatch sites at the programmed region of the library, 3.) fitted relative KD values, 4.) fitted relative KD values when combining the counts associated with the 18 8mer-mismatch sites at the programmed region of the library, 5.) the pairing and offset model coeffificients derived from the relative KD values when combining the counts associated with the 18 8mer-mismatch sites at the programmed region of the library, and 6.) the pairing, offset, and mismatch coefficients derived from the relative KD values.

organism: synthetic construct

source_name: In vitro biochemical assay

extract_protocol:
RNA extraction was prepared according to McGeary, Lin, et al. (2019).
RNA libraries were prepared for sequencing according to McGeary, Lin, et al. (2019).

treatment_protocol: AGO-RBNS was performed according to McGeary, Lin, et al. (2019).

tag: miRNA

tag: ago-mirna complex purification

tag: group

tag: rep


title: miR-155-let-7a_purification1_0.4percent


title: Adult RE

description:
Adult rat skeletal muscle mononuclear cell 10X scRNA-seq recovered for 7 days post 14 days hindlimb suspension
YREC1_CKDL200152036-1a-SI_GA_H10_H7VVJBBXX_S2_L003

value: Underwent disuse atrophy for 14 days, followed by 7 days of reloading without mechanotherapy


title: Old RE

description:
Old rat skeletal muscle mononuclear cell 10X scRNA-seq recovered for 7 days post 14 days hindlimb suspension
OREC3_CKDL200152038-1a-SI_GA_H12_H7VVJBBXX_S1_L004


title: miR-155-let-7a_purification1_1.265percent


title: Adult RE + M

description:
Adult rat skeletal muscle mononuclear cell 10X scRNA-seq recovered for 7 days with mechanotherapy every other day post 14 days of hindlimb suspension
YREM2_CKDL200152037-1a-SI_GA_H11_H7VVJBBXX_S1_L003


title: miR-155-let-7a_purification1_4percent


title: Adult WB

description:
Adult rat skeletal muscle mononuclear cell 10X scRNA-seq under normal ambulatory conditions
YWBC6_CKDL200164099-1a-SI_GA_C6_HCJVMBBXX_S1_L003


title: miR-155-let-7a_purification1_40percent


title: let-7a-miR-155_purification1_0percent

description:
synthetic RNA library
agorbns_let-7a-miR-155_sitecounts.txt
agorbns_let-7a-miR-155_summed_8mer_mismatch_sitecounts.txt
agorbns_let-7a-miR-155_kds.txt
agorbns_let-7a-miR-155_summed_8mer_mismatch_kds.txt
agorbns_let-7a-miR-155_pairing_and_offset_model_coefficients.txt
agorbns_let-7a-miR-155_pairing_offset_and_mismatch_model_coefficients.txt
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA


title: let-7a-miR-155_purification1_1.265percent


title: let-7a-miR-155_purification1_0.4percent


title: miR-155-let-7a_purification1_inputlibrary

value: inputlibrary


title: let-7a-miR-155_purification1_inputlibrary


title: let-7a-miR-155_purification1_4percent


title: SS2_16_043_A12

description:
Brain single cell 3
SS2_16_043_A12_R1.fastq.gz
Brain single cell 3


title: let-7a-miR-155_purification1_12.65percent


title: miR-155_purification_1_0percent

description:
synthetic RNA library
agorbns_miR-155_sitecounts.txt
agorbns_miR-155_summed_8mer_mismatch_sitecounts.txt
agorbns_miR-155_kds.txt
agorbns_miR-155_summed_8mer_mismatch_kds.txt
agorbns_miR-155_pairing_and_offset_model_coefficients.txt
agorbns_miR-155_pairing_offset_and_mismatch_model_coefficients.txt
agorbns_miR-155_positions13–16_mismatch_kd_foldchanges.txt
agorbns_miR-155_positions13–16_bulge_and_del_kd_foldchanges.txt
agorbns_miR-155_positions13–17_mismatch_kd_foldchanges.txt
agorbns_miR-155_positions13–17_bulge_and_del_kd_foldchanges.txt
agorbns_miR-155_positions13–18_mismatch_kd_foldchanges.txt
agorbns_miR-155_positions13–18_bulge_and_del_kd_foldchanges.txt
agorbns_miR-155_positions15-21_mismatch_kd_foldchanges.txt
agorbns_miR-155_positions15-21_bulge_and_del_kd_foldchanges.txt
agorbns_miR-155_positions15-22_mismatch_kd_foldchanges.txt
agorbns_miR-155_positions15-22_bulge_and_del_kd_foldchanges.txt
agorbns_miR-155_positions13-21_mismatch_kd_foldchanges.txt
agorbns_miR-155_positions13-21_bulge_and_del_kd_foldchanges.txt
agorbns_miR-155_positions13-22_mismatch_kd_foldchanges.txt
agorbns_miR-155_positions13-22_bulge_and_del_kd_foldchanges.txt
agorbns_miR-155_positions13-23_mismatch_kd_foldchanges.txt
agorbns_miR-155_positions13-23_bulge_and_del_kd_foldchanges.txt


title: miR-155_purification_1_0.4percent


title: let-7a-miR-155_purification1_40percent


title: miR-155_purification_1_40percent


title: let-7a(-1)_purification1_0percent

description:
synthetic RNA library
agorbns_let-7a(-1)_sitecounts.txt
agorbns_let-7a(-1)_summed_8mer_mismatch_sitecounts.txt
agorbns_let-7a(-1)_kds.txt
agorbns_let-7a(-1)_summed_8mer_mismatch_kds.txt
agorbns_let-7a(-1)_pairing_and_offset_model_coefficients.txt
agorbns_let-7a(-1)_pairing_offset_and_mismatch_model_coefficients.txt
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA


title: miR-155_purification_1_4percent


title: miR-155_purification_1_12.65percent


title: let-7a(-1)_purification1_1.265percent


title: miR-155_purification_1_1.265percent


title: let-7a(-1)_purification1_0.4percent


title: miR-155_purification_1_inputlibrary


title: let-7a(-1)_purification1_12.65percent


title: miR-155-let-7a_purification1_12.65percent


title: let-7a(-1)_purification1_40percent


title: let-7a(+1)_purification1_0.4percent

description:
synthetic RNA library
agorbns_let-7a(+1)_sitecounts.txt
agorbns_let-7a(+1)_summed_8mer_mismatch_sitecounts.txt
agorbns_let-7a(+1)_kds.txt
agorbns_let-7a(+1)_summed_8mer_mismatch_kds.txt
agorbns_let-7a(+1)_pairing_and_offset_model_coefficients.txt
agorbns_let-7a(+1)_pairing_offset_and_mismatch_model_coefficients.txt
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA


title: let-7a(-1)_purification1_4percent


title: let-7a(+1)_purification1_0percent


title: let-7a(+1)_purification1_1.265percent


title: let-7a(+1)_purification1_12.65percent


title: let-7a(+1)_purification1_40percent


title: miR-1_purification_1_4percent

description:
synthetic RNA library
agorbns_miR-1_sitecounts.txt
agorbns_miR-1_summed_8mer_mismatch_sitecounts.txt
agorbns_miR-1_kds.txt
agorbns_miR-1_summed_8mer_mismatch_kds.txt
agorbns_miR-1_pairing_and_offset_model_coefficients.txt
agorbns_miR-1_pairing_offset_and_mismatch_model_coefficients.txt
agorbns_miR-1_positions12–15_mismatch_kd_foldchanges.txt
agorbns_miR-1_positions12–15_bulge_and_del_kd_foldchanges.txt
agorbns_miR-1_positions12–16_mismatch_kd_foldchanges.txt
agorbns_miR-1_positions12–16_bulge_and_del_kd_foldchanges.txt
agorbns_miR-1_positions12–17_mismatch_kd_foldchanges.txt
agorbns_miR-1_positions12–17_bulge_and_del_kd_foldchanges.txt
agorbns_miR-1_positions12-18_mismatch_kd_foldchanges.txt
agorbns_miR-1_positions12-18_bulge_and_del_kd_foldchanges.txt
agorbns_miR-1_positions11-18_mismatch_kd_foldchanges.txt
agorbns_miR-1_positions11-18_bulge_and_del_kd_foldchanges.txt
agorbns_miR-1_positions11-19_mismatch_kd_foldchanges.txt
agorbns_miR-1_positions11-19_bulge_and_del_kd_foldchanges.txt
agorbns_miR-1_positions11-20_mismatch_kd_foldchanges.txt
agorbns_miR-1_positions11-20_bulge_and_del_kd_foldchanges.txt
agorbns_miR-1_positions11-21_mismatch_kd_foldchanges.txt
agorbns_miR-1_positions11-21_bulge_and_del_kd_foldchanges.txt


title: let-7a(+1),let-7a(-1)_purification1_inputlibrary

description:
synthetic RNA library
agorbns_let-7a(+1)_sitecounts.txt
agorbns_let-7a(+1)_summed_8mer_mismatch_sitecounts.txt
agorbns_let-7a(+1)_kds.txt
agorbns_let-7a(+1)_summed_8mer_mismatch_kds.txt
agorbns_let-7a(+1)_pairing_and_offset_model_coefficients.txt
agorbns_let-7a(+1)_pairing_offset_and_mismatch_model_coefficients.txt
agorbns_let-7a(-1)_sitecounts.txt
agorbns_let-7a(-1)_summed_8mer_mismatch_sitecounts.txt
agorbns_let-7a(-1)_kds.txt
agorbns_let-7a(-1)_summed_8mer_mismatch_kds.txt
agorbns_let-7a(-1)_pairing_and_offset_model_coefficients.txt
agorbns_let-7a(-1)_pairing_offset_and_mismatch_model_coefficients.txt
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA


title: miR-1_purification_1_0.4percent


title: miR-1_purification_1_1.265percent


title: miR-1_purification_1_12.65percent


title: stem-pooled Iso-seq

city: St Paul

first: Shaun J

middle: J

last: Curtin

email: shaun.curtin@usda.gov, curti242@umn.edu

state: MN

address: 1991 Upper Buford Circle, 411 Borlaug Hall

department: Agronomy and Plant Genetics

institute: USDA-ARS-PSRU

data_processing:
Library strategy: Iso-seq
PacBio® Iso-seq analysis, the same RNA was prepared according to the Iso-Seq Sample Preparation Procedure
The data processed using tools from the PacBio SMRT Link v9.0 distribution, beginning with conversion of subreads into consensus sequences using ccs v4.2.0 with default parameters.
Consensus reads used in subsequent analyses resulted from removal of primer sequences using lima (v1.11.0, --isoseq option with NEB primers) and identification of full length non-concatamer (flnc) sequences with polyA tails trimmed using isoseq3 refine (v3.3.0) with default parameters
The resulting flnc sequences were aligned to the Medicago truncatula A17 v4.0 reference genome (medtr.A17_HM341.gnm4) using minimap2 (2.17-r954-dirty, with options --splice --cs ) and the subsets of reads aligning to chr2:3696725-3700846 and chr4:35437929-35444569 were respectively taken as MsPHO2-B haplotypes corresponding to Medtr2g013650/ MtrunA17_Chr2g0282211, and MsPHO2-C haplotypes corresponding to Medtr4g088835/ MtrunA17Chr4g0047301 (MsPHO2-2)
The set of reads corresponding to each of the two loci were independently processed for possible allele-defining variation using samtools (v1.10) mpileup with options --excl-flags 3844 --output-QNAME, and the haplotype-defining variation was assessed using script phase_mpileup.pl (available from https://github.com/adf-ncgr/haploallele_utils/releases/tag/miller_et_al_2021) using options --max_hap_dist=6000 --ploidy=4 (and including --min_hap_coverage=4 for PHO2-C); the strategy used in the script was loosely based on the isophase strategy described in (WANG et al. 2020).

organism: Medicago sativa

source_name: stem

growth_protocol: RegenSY27x alfalfa plants were grown at 22oC and 18oC day/night temperatures with a photoperiod of 16 hours and three replicates of 8-week-old leaf, stem, flower, seedpod, root and nodule tissue harvested.

extract_protocol:
The RNA was extracted from these plants using a Qiagen RNeasy Plant Mini kit according to the manufacturer's instructions, pooled and used to construct libraries
The libraries were validated using a High Sensitivity Chip on the Agilent 2100 Bioanalyzer.

value: stem

tag: developmental stage

value: 20 week days old plant


title: seedpod-pooled Iso-seq

source_name: seedpod

value: seedpod


title: nodules-pooled Iso-seq

source_name: nodules

value: nodules


title: roots-pooled Iso-seq

source_name: roots

value: roots


title: leaf-pooled Iso-seq

source_name: leaf

value: leaf


title: miR-1_purification_1_40percent


title: let-7a-21nt_purification2_0percent

description:
synthetic RNA library
agorbns_let-7a-21nt_purification2_sitecounts.txt
agorbns_let-7a-21nt_purification2_summed_8mer_mismatch_sitecounts.txt
agorbns_let-7a-21nt_purification2_kds.txt
agorbns_let-7a-21nt_purification2_summed_8mer_mismatch_kds.txt
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA


title: miR-1_purification_1_inputlibrary


title: flower-bud-pooled Iso-seq

source_name: flower

value: flower


title: let-7a-21nt_purification2_0.4percent


title: let-7a(+1)_purification1_4percent


title: let-7a-21nt_purification2_1.265percent


title: miR-1_purification_1_0percent


title: let-7a-21nt_purification2_4percent


title: let-7a-21nt_purification2_40percent


title: let-7a-21nt_purification1_0.4percent

description:
synthetic RNA library
agorbns_let-7a-21nt_purification1_sitecounts.txt
agorbns_let-7a-21nt_purification1_summed_8mer_mismatch_sitecounts.txt
agorbns_let-7a-21nt_purification1_kds.txt
agorbns_let-7a-21nt_purification1_summed_8mer_mismatch_kds.txt
agorbns_let-7a-21nt_pairing_and_offset_model_coefficients.txt
agorbns_let-7a-21nt_pairing_offset_and_mismatch_model_coefficients.txt
agorbns_let-7a-21nt_purification1_positions11–14_mismatch_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11–14_bulge_and_del_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11–15_mismatch_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11–15_bulge_and_del_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11–16_mismatch_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11–16_bulge_and_del_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11-17_mismatch_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11-17_bulge_and_del_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11-18_mismatch_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11-18_bulge_and_del_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions9-17_mismatch_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions9-17_bulge_and_del_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions9-18_mismatch_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions9-18_bulge_and_del_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions10-20_mismatch_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions10-20_bulge_and_del_kd_foldchanges.txt


title: MCD aPD1.3

type: RNA

city: Bethesda, MD

first: Kylynda

middle: C

last: Bauer

state: Maryland

address: Building 10, NIH

institute: NIH-NCI

description:
MCD_aPD1_3
Information on nCounter® mice Metabolic Pathways Panel and Protocol available at http://www.nanostring.com

scan_protocol: Samples were run on nsolver nanostring mouse metabolic ncounter platform

data_processing: Microarray normalization and quality control steps were conducted on nSolver 4.0 Analysis software following manufacturer recommendations. Housekeeping genes below 150 were excluded from normalization.

source_name: hepatic CD8 cells

extract_protocol: Following euthanasia hepatic lymphocytes were isolated and CD8 T cells were sorted using autoMACs magnetic beads. RNA was extracted from sorted CD8 T cells using RNA isolation kit (Quiagen) and RNA concentrations determined using a NanoDrop Spectrophotometer (ThermoFisher Scientific)

treatment_protocol: This dataset includes 12 mice. 6 mice were fed regular chow (REG), 6 mice were maintained on methionine/choline deficient (MCD) diet, established fatty liver model. Half of the mice within each group were treated with 200ug anti-PD1 by i.p. injection. Mice were randomized and age-matched.

tag: Sex

value: female

tag: treatment

value: MCD aPD1 (MCD diet, aPD1 treatment)

value: hepatic CD8 cells


title: MCD IgG3

description:
MCD_CON_3
Information on nCounter® mice Metabolic Pathways Panel and Protocol available at http://www.nanostring.com

value: 3 MCD control (methionine/choline-deficient diet, no treatment)


title: MCD IgG2

description:
MCD_CON_2
Information on nCounter® mice Metabolic Pathways Panel and Protocol available at http://www.nanostring.com


title: MCD IgG1

description:
MCD_CON_1
Information on nCounter® mice Metabolic Pathways Panel and Protocol available at http://www.nanostring.com


title: MCD aPD1.2

description:
MCD_aPD1_2
Information on nCounter® mice Metabolic Pathways Panel and Protocol available at http://www.nanostring.com


title: MCD aPD1.1

description:
MCD_aPD1_1
Information on nCounter® mice Metabolic Pathways Panel and Protocol available at http://www.nanostring.com


title: let-7a-21nt_purification1_0percent


title: RD aPD1.3

description:
REG_aPD1_3
Information on nCounter® mice Metabolic Pathways Panel and Protocol available at http://www.nanostring.com

value: REG aPD1 (regular diet, aPD1 treated)


title: RD aPD1.2

description:
REG_aPD1_2
Information on nCounter® mice Metabolic Pathways Panel and Protocol available at http://www.nanostring.com


title: let-7a-21nt_purification1_4percent


title: let-7a-21nt_purification1_1.265percent


title: let-7a-21nt_purification1_12.65percent_rep1


title: RD aPD1.1

description:
REG_aPD1_1
Information on nCounter® mice Metabolic Pathways Panel and Protocol available at http://www.nanostring.com


title: let-7a-21nt_purification1_12.65percent_rep2


title: let-7a-21nt_purification1_40percent

description:
synthetic RNA library
agorbns_let-7a-21nt_purification1_sitecounts.txt
agorbns_let-7a-21nt_purification1_summed_8mer_mismatch_sitecounts.txt
agorbns_let-7a-21nt_purification1_kds.txt
agorbns_let-7a-21nt_purification1_summed_8mer_mismatch_kds.txt
agorbns_let-7a-21nt_pairing_and_offset_model_coefficients.txt
agorbns_let-7a-21nt_pairing_offset_and_mismatch_model_coefficients.txt
agorbns_let-7a-21nt_purification1_positions11-14_mismatch_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11-14_bulge_and_del_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11-15_mismatch_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11-15_bulge_and_del_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11-16_mismatch_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11-16_bulge_and_del_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11-17_mismatch_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11-17_bulge_and_del_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11-18_mismatch_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions11-18_bulge_and_del_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions9-17_mismatch_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions9-17_bulge_and_del_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions9-18_mismatch_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions9-18_bulge_and_del_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions10-20_mismatch_kd_foldchanges.txt
agorbns_let-7a-21nt_purification1_positions10-20_bulge_and_del_kd_foldchanges.txt


title: RD IgG3

description:
REG_CON_3
Information on nCounter® mice Metabolic Pathways Panel and Protocol available at http://www.nanostring.com

value: REG Control (diet = standard mouse chow, no treatment)


title: let-7a-21nt_purification2_12.65percent


title: TLS-free, Non-HEV-4

city: St. Petersburg

first: Masanobu

last: Komatsu

state: FL

address: 600 5th Street S

institute: Johns Hopkins All Children's Hospital

description: laser capture microdissected tissue

data_processing:
Sequence reads were subjected to a variety of pre-and post-alignment QC measures before being mapped against the reference genome, hg19, using STAR-2.5.3a.
Gene-level quantification was determined using HTSeq 0.6.1 by summation of raw counts of reads aligned to the region associated with each gene.
Differential expression analysis was performed using DESeq2_1.6.3. with batch correction:  HEV vs. non-HEV vessels in TLS-rich or TLS-free tumors
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text file of normalized count for every samples and every genes
Supplementary_files_format_and_content: tab-delimited text files of gene list of p<0.05, FC<-2
Supplementary_files_format_and_content: tab-delimited text files of gene list of p<0.05, FC>2

organism: Homo sapiens

source_name: human breast cancer

extract_protocol:
Total RNA was isolated using NucleoSpin® totalRNA FFPE (Clontech 740969.10) from tissues obtained by laser capture microdissection.
An amount of 5 ng total RNA was used for constructing RNAseq library of each micro-dissected endothelium type from each tumor sample. RNA amplification from FFPE samples was carried out by Single Primer Isothermal Amplification method using NuGEN TRIO RNAseq Library Preparation kit (Part #0506) for library construction

tag: tls type

value: TLS-free

value: Non-HEV


title: Non-EC-1

description: laser capture microdissected tissue

value: TLS-rich

value: Non-EC


title: Non-EC-2

description: laser capture microdissected tissue


title: let-7a-21nt_purification1_inputlibrary

value: inputlibrary


title: TLS-free, Non-HEV-1

description: laser capture microdissected tissue


title: TLS-free, Non-HEV-3

description: laser capture microdissected tissue


title: TLS-free, Non-HEV-2

description: laser capture microdissected tissue


title: RD IgG1

description:
REG_CON_1
Information on nCounter® mice Metabolic Pathways Panel and Protocol available at http://www.nanostring.com


title: let-7a-21nt_purification2_inputlibrary


title: TLS-rich, Non-HEV-4

description: laser capture microdissected tissue


title: TLS-rich, Non-HEV-3

description: laser capture microdissected tissue


title: TLS-rich, HEV-4

description: laser capture microdissected tissue

value: HEV


title: TLS-rich, Non-HEV-1

description: laser capture microdissected tissue


title: TLS-rich, HEV-2

description: laser capture microdissected tissue


title: TLS-rich, Non-HEV-2

description: laser capture microdissected tissue


title: TLS-rich, HEV-1

description: laser capture microdissected tissue


title: ZFC3H1 Knockdown Nuc #2

city: Ipswich

first: Eric

last: Wolf

email: ewolf@neb.com, ericjwolf1@gmail.com

address: 240 County Road

department: RNA Division

institute: New England Biolabs

data_processing:
Reads were mapped to the human genome utilizing using STAR.
Expression fold changes were quantified utilizing DESeq.
IPA analysis, all IPA associated reads were combined and compared to reads in the last exon.
Genome_build: hg19

growth_protocol: U2OS cells were grown in DMEM supplemented with 10% FBS and 5% Pennicillin/Streptomycin

extract_protocol: NEBNext® Ultra™ II Directional RNA Library Prep kit

treatment_protocol: ZFC3H1 shRNA knockdown was performed in an identifical to (Lee et al., NAR, 48 2020)

tag: cell line

value: ZFC3H1 KD

tag: fraction

value: nuclear


title: ZFC3H1 Knockdown Total #2

value: total


title: Control Knockdown Nuc #2

value: Control KD


title: TLS-rich, HEV-3

description: laser capture microdissected tissue


title: ZFC3H1 Knockdown Cyto #1

value: cytoplasmic


title: ZFC3H1 Knockdown Nuc #1


title: Control Knockdown Total #2


title: RD IgG2

description:
REG_CON_2
Information on nCounter® mice Metabolic Pathways Panel and Protocol available at http://www.nanostring.com

tag: strain

value: female


title: Control Knockdown Nuc #1


title: Control Knockdown Cyto #1


title: ZFC3H1 Knockdown Total #1


title: Control Knockdown Total #1


title: 62339_4

city: London

first: Thu

middle: Hong

last: Le

address: Gower Street

country: United Kingdom

institute: UCL

data_processing:
alignment reads to the reference to generate the BAM files, using STAR
sort the raw bam files and mark duplications using Picard
assemble the GTF reference file based on your BAM files using CUFFLINK and CUFFMERGE
estimate the gene counts and then calculate the RPKMs using featureCounts and DESeq2
normalize the RPKMs of each gene and detect the significant different expression genes [using DESeq2]
Genome_build: Rn6.0
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

source_name: Adipose cells

extract_protocol:
Adipose tissue was dissected, and then snap-frozen. RNA was extracted using Trizol
Library preps were created using Illumina kits and run on an Illumina HiSeq 2500 to obtain 75bp single-end reads for adipose tissue

tag: tissue

value: adipose

value: 17 weeks


title: ZFC3H1 Knockdown Cyto #2


title: m4_2

city: Shanghai

first: Moyang

last: Liu

address: dongchuan road 800

department: School of Agriculture and Biology

country: China

institute: Shanghai Jiao Tong University

description: Tartary buckwheat

data_processing:
Raw data (raw reads) of fastq format were firstly processed through in-house perl scripts. In this step, clean data (clean reads) were obtained by removing reads Containing adapter, reads Containing ploy-N and low quality reads from raw data. All the downstream analyses were based on the clean data with high quality.
Index  of  the  reference  genome  was  built  using  Bowtie  v2.0.6  and paired-end clean reads were aligned to the reference genome using TopHat v2.0.12.
RPKM of each gene was calculated based on the length of the gene and reads count mapped to  this  gene, Considering the effect of sequencing depth and gene length for the reads count at the same time(Mortazavi et al., 2008)
Genome_build: http://www.mbkbase.org/Pinku1/
Supplementary_files_format_and_content: tab-delimited text files include RPKM values for each Sample

organism: Fagopyrum tataricum

source_name: seeds

growth_protocol: Seeds of Tartary buckwheat (MIQIAO 1) were collected in 2016 at the experimental field of College of Life Science, Sichuan Agricultural University (Lat. 29°97’ N, 102°97’ E, Alt. 580 m), China. It had been introduced to the field and grown in the same ecoenvironmental and cultivation conditions for five years. We observed the seed development process from anthesis till maturation in April-May, 2016. Seeds were hand-collected at intervals of two days, from the beginning of seed until full maturity,covering a total range of 30 d.

extract_protocol:
Buckwheat seeds were sampled, flash frozen on dry ice, and RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit (Cat#FC-122-1001) was used with 3 ug of total RNA for the Construction of sequencing libraries.
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: For the transcriptome sampling, seeds at three developing stages (13, 19, 25 dpa) were collected from the same individual, and seeds with the same developing stage from three plants comprised of three replicates. the collected samples were flash frozen in liquid nitrogen and stored at −80°c until further use.

tag: Stage

value: initial maturity stage

value: seeds


title: m4_3

description: Tartary buckwheat


title: Control Knockdown Cyto #2


title: m3_3

description: Tartary buckwheat

value: discoloration stage


title: m4_1

description: Tartary buckwheat


title: DTHT1wkRep3

city: WEST LAFAYETTE

first: Shaojun

last: Xie

state: Indiana

address: 3135 Decatur Street

institute: Purdue University

data_processing:
The libraries were sequenced on Illumina HiSeq 2500 platform with 101 bp paired-end reads.
FASTX-Toolkit was used to perform quality control for RNA-Seq data w8ith at least 30 base quality score and at least 50 bps of read length.
TopHat was used to align the reads to the switchgrass reference genome
FPKM values were calculated using the Cufflinks
Reads counts performed usign HTSeq
Genome_build: Pvirgatum_450_v4.1 (https://phytozome-next.jgi.doe.gov/info/Pvirgatum_v4_1)
Supplementary_files_format_and_content: txt

organism: Panicum virgatum

source_name: leaf tissue

growth_protocol: The ramets of lowland ecotype Alamo, AP13 genotype of switcghrass were transplanted in 3GP nursery pots and later transferred to the green house for optimum conditions at the Samuel Roberts Noble Foundation in Ardmore, Oklahoma.

extract_protocol:
Total RNA was extracted from all  samples, contamination of genomic DNA removed by DNAase treatment, quality of RNA's checked, and 1 µg  of RNA used for cDNA sythnesis.
RNA libraries were prepared for sequencing using Illumina TruSeq Stranded mRNA Sample Preparation Kit following manufacturers protocol.

treatment_protocol: The control and drought treated plants were arranged in one growth chamber and palnts with drought and heat treatment in a separate chamber

value: leaf

value: drought and heat

tag: biomaterial provider

value: Robert Nobel Foundation


title: DTHT120h48hRep2


title: DTHT144h72hRep3


title: DTHT144h72hRep1


title: DTHT120h48hRep3


title: DTHT144h72hRep2


title: DTHT1wkRep2


title: DTHT1wkRep1


title: m3_2

description: Tartary buckwheat


title: m2_3

description: Tartary buckwheat

value: green fruit stage


title: m2_2

description: Tartary buckwheat


title: DTHT94h24hRep2


title: DTHT120h48hRep1


title: m2_1

description: Tartary buckwheat


title: DTHT72h0hRep3


title: m3_1

description: Tartary buckwheat


title: DTHT72h0hRep1


title: DTHT72h0hRep2


title: RNA-seq-NC_rep2

city: Hangzhou

first: Kun

last: Zhang

address: 866 Yuhangtang Rd

institute: Zhejiang University

data_processing:
Reads were trimmed by Trimmomatic to remove the bases with low quality and adapter sequences
The trimmed reads were align to Bos_taurus_UMD_3.1.1  by Hisat2
The raw reads counts of all expressed genes were quatified by FeatureCounts
The abundance of all expressed genes were normalized to FPKM by Cufflinks
Genome_build: Bos_taurus_UMD_3.1.1
Supplementary_files_format_and_content: text file includes FPKM calculated by Cufflinks for each sample

molecule: polyA RNA

organism: Bos taurus

source_name: embryo

extract_protocol:
Total RNA was isolated from embryos using Picopure RNA isolation kit (Life Technologies, Grand Island, NY, USA) according to the manufacturer's instruction.
mRNAs were separated with oligo(dT)25 beads, and was used to prepare sequencing libraries with NEB Next Ultra RNA Library Prep Kit for Illumina (New England Biolabs). Briefly, mRNA was fragmented and reverse transcribed. The cDNA library was subject to end repair, poly(A)-tailing, adaptor ligation, and PCR amplification of 12–15 cycles for sequencing library construction.

tag: age

value: 3 day post insemination

value: embryos were injected with negative control siRNAs at zygote stage


title: DTHT0hRep3


title: RNA-seq-Kdm5_KD_rep2

value: embryos were injected with KDM6A&B&C siRNAs at zygote stage


title: RNA-seq-Kdm5_KD_rep1

value: embryos were injected with KDM5A&B&C siRNAs at zygote stage


title: DTHT0hRep2


title: RNA-seq-NC_rep1


title: KDM5_H3K4me3_IP2

library_source: genomic

data_processing:
Basecalls performed using CASAVA
Reads were trimmed by Trimmomatic to remove the bases with low quality and adapter sequences
The trimmed reads were align to Bos_taurus_UMD_3.1.1 by Bowtie2
Reads with low map quality were removed by Samtools, and PCR duplicates were removed by Picard
Genome_build: Bos_taurus_UMD_3.1.1
Supplementary_files_format_and_content: Bigwig files are generated using bamCoverage mode of DeepTools, and the reads counts were normalized to RPKM.

molecule: genomic DNA

extract_protocol:
The embryos were washed 3 times in 0.5% BSA after removal of zona pellucida.  After cell lysis, the chromatin was digested with micrococcal nuclease and histone-DNA complexes were isolated with H3K4me3 antibody.
Libraries were prepared with NEBNext Ultra II DNA Library Prep Kit for Illumina (E7645)

value: embryos were injected with KDM8A&B&C siRNAs at zygote stage

tag: chipseq antibody


title: DTHT0hRep1


title: DTHT94h24hRep1


title: DTHT94h24hRep3


title: DT1wkRep2

value: drought


title: KDM5_KD_input1


title: NC_H3K4me3_IP1


title: KDM5_KD_input2


title: DT1wkRep3


title: NC_H3K4me3_IP2


title: DT144hRep3


title: SS2_16_043_D16

description:
Brain single cell 78
SS2_16_043_D16_R1.fastq.gz
Brain single cell 78

value: brain

value: adult mice

tag: genotype

tag: notch3 status

value: KO


title: NC_input2


title: DT120hRep2


title: NC_input1


title: DT120hRep3


title: DT144hRep2


title: DT120hRep1


title: DT1wkRep1


title: Mo_input2

value: morula

value: 6 day post insemination

value: Wild type


title: DT144hRep1


title: 16_cell_H3K4me3_IP2

value: 3.5 day post insemination


title: Mo_H3K4me3_IP2


title: DT96hRep2

value: leaf


title: DT96hRep1


title: DT96hRep3


title: 16_cell_H3K4me3_IP1


title: DT72hRep3


title: KDM5_H3K4me3_IP1

value: embryos were injected with KDM7A&B&C siRNAs at zygote stage


title: DT72hRep2

value: Robert Nobel Foundation


title: 16_cell_input2


title: DT72hRep1


title: DT0hRep3


title: 8_cell_H3K4me3_IP1

value: 2.5 day post insemination


title: 8_cell_H3K4me3_IP2


title: 16_cell_input1


title: DT0hRep2


title: Mo_H3K4me3_IP1