title: RNAAtlas300_polyA_RNA [RNA_AT130]

status: Public on Apr 15 2021

city: Badalona

first: LUCIA

last: LORENZI

state: Barcelona

address: Ctra de Can Ruti, Camí de les Escoles s/n

country: Spain

institute: Josep Carreras Research Institute

description:
RNAAtlas_polyA_counts_filtered.txt
RNAAtlas_polyA_tpm_filtered.txt

data_processing:
polyA and total RNA demultiplexed reads were mapped to the hg38 reference genome with TopHat v2.1.0 (Bowtie2 v2.2.6, parameters: --no-coverage-search option, --library-type=fr-firststrand). The Ensembl transcriptome (v86) was provided to guide the mapping of reads to known transcripts first. small RNA demultiplexed reads were processed with the FASTX-Toolkit (v0.0.14) to remove adapters, filter reads by quality (quality score of at least 20 in 80% of the sequence) and collapse non-unique reads, and then mapped to the genome with Bowtie (v1.1.2) (parameters: -n = 0, l = 25, --best, and k = 10).
Transcriptomes were assembled in each polyA and total RNA library separately using StringTie (v1.3.3). Default parameters were used and the Ensembl reference annotation (v86) was supplied to guide the assembly. All individual transcriptomes were merged together with the reference Ensembl transcriptome (v86) using StringTie merge applying a cutoff of 1 TPM and minimum transcript length of 200 nucleotides, with all other parameters set to default values. Novel miRNAs were predicted with miRDeep2 (v2.0.0.8), using mapped reads per sample and all human miRNAs in miRBase v22 as input. Novel miRNA predictions with non-zero estimated probability were aggregated across samples, retaining only the prediction with maximum counts from both mature forms in a given sample in cases of predictions with partially overlapping coordinates.
Transcripts assembled from polyA and total RNA libraries were quantified using kallisto quant (flag --rf-stranded and all other parameters set to default values) across all polyA and total RNA-sequencing libraries. Counts and TPMs were collapsed at gene level. After quantification, only protein_coding, antisense and lincRNA genes with no less than 0.1 TPM in at least one samples were retained. CircRNAs where identified from total RNA-sequencing data using two independent workflows, find_circ2 and CIRCexplorer2 using genome build hg19. Only circRNAs identified by both tools, with mean counts between tools higher than 4 in at least one sample and successfully converted to hg38 coordinates with the liftOver tool (UCSC) were retained. Reads mapped to the aggregated newly predicted miRNAs and human miRNAs from miRbase v22 were quantified across all samples. For each miRNA, counts from the canonical mature form and non-canonical mature forms (isoMiRs) were aggregated. Only miRNAs with 10 or more counts in at least one sample were retained.
Genome_build: hg38
Supplementary_files_format_and_content: Processed data files contain abundance measurments across all samples for known and novel mRNA, antisense (asRNA) and lincRNA genes, circular RNAs and miRNAs that passed the filtering criteria. Both raw estimated counts and library-normalized values (reads per million (rpm) for circRNAs and miRNAs) or library- and gene length-normalized values (transcripts per million (TPM) for mRNAs, asRNAs and lincRNAs genes) are provided. For circRNA read counts, only reads spanning the backsplice junction (backspliced reads) are considered. Gene names and/or genome coordinates from hg38 assembly are provided as identifiers.

source_name: Fetal Brain tissue

extract_protocol:
RNA of individual cell types was obtained from ScienCell Research Laboratories or isolated from cell types collected at Ghent University Hospital. RNA from collected cell types and (cancer) cell lines was isolated using the miRNeasy kit (Qiagen) according to the manufacturer’s instructions. RNA samples from normal human tissues were obtained from Ambion and Biochain.
Small RNA libraries were generated using the TruSeq Small RNA library prep kit (Illumina) according to the manufacturer’s instructions, using 750 ng input RNA. Library size selection was performed using a Pippin Prep device (Sage Science). Total RNA libraries were generated using the TruSeq stranded total-RNA library prep kit with Ribo-Zero Gold (Illumina) according to the manufacturer’s instructions using 1 µg of input RNA. PolyA RNA libraries were generated using the TruSeq Stranded mRNA library prep kit (Illumina) according to the manufacturer’s instructions using 1 µg of input RNA.

tag: sample id

tag: sample id [deprecated]

tag: sample type

value: tissue

tag: organ system

value: Central Nervous System


title: RNAAtlas298_total_RNA [RNA_AT128]

type: SRA

description:
RNAAtlas_totalRNA_counts_filtered.txt
RNAAtlas_totalRNA_tpm_filtered.txt
RNAAtlas_circRNA_backspliced_counts_filtered.txt
RNAAtlas_circRNA_backspliced_rpm_filtered.txt

library_source: transcriptomic

molecule: total RNA

organism: Homo sapiens

source_name: Brain occipital cortex tissue


title: 8024 WT

status: Public on May 25 2021

city: Hong Kong SAR

first: Xinyuan

last: Guan

address: No. 21 SASSOON Road Rm10-56 Laboratory Block

department: Clinical Oncology

country: China

institute: The University of Hong Kong

description: non-treated

data_processing:
Raw data (raw reads) of fastq format were firstly processed through in-house perl  scripts. In this step, clean data (clean reads) were obtained by removing reads  containing adapter, reads containing ploy-N and low quality reads from raw data.  At the same time, Q20, Q30 and GC content the clean data were calculated. All  the downstream analyses were based on the clean data with high quality.
Reference genome and gene model annotation files were downloaded from genome  website directly. Index of the reference genome was built using Hisat2 v2.0.5 and  paired-end clean reads were aligned to the reference genome using Hisat2 v2.0.5.  We selected Hisat2 as the mapping tool for that Hisat2 can generate a database of  splice junctions based on the gene model annotation file and thus a better mapping  result than other non-splice mapping tools.
featureCounts v1.5.0-p3 was used to count the reads numbers mapped to each gene.  And then FPKM of each gene was calculated based on the length of the gene and  reads count mapped to this gene. FPKM, expected number of Fragments Per  Kilobase of transcript sequence per Millions base pairs sequenced, considers the  effect of sequencing depth and gene length for the reads count at the same time, and  is currently the most commonly used method for estimating gene expression levels.
Genome_build: hg19
Supplementary_files_format_and_content: Matrix table with raw gene counts for each genes and each Sample
Supplementary_files_format_and_content: Matrix table with  FPKM values for each genes and each Sample

source_name: HCC

extract_protocol:
Culture medium was removed, cell line flash frozen on -80℃ freeezer with Trizol reagent. Total RNA was extracted and qualtified.  And 1 ug of total RNA for the construction of sequencing libraries.
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: MAEL knockout with sgRNA, knockout efficiency verified by western blot and T7E1 assay

tag: tissue

value: liver

tag: cell type

value: Alexander cells

tag: morphology

value: epithelial

tag: cell line

tag: genotype

value: wildtype


title: B_432_Seronegative

status: Public on May 01 2021

city: Bethesda

first: Hye Kyung

last: Lee

state: MD

address: 8 CENTER DR RM 107

department: National Institute of Diabetes and Digestive and Kidney (NIDDK)

country: USA

institute: National Institutes of Health (NIH)

data_processing:
RNA-seq data were trimmed using trimmomatic (Bolger et al., Bioinformatics, 2014) and subsequently aligned to the reference genome hg19 applying STAR RNA-seq aligner (Dobin et al., Bioinformatics, 2013). HTSeq(Anders et al., Bioinformatics, 2015) was applied for obtain HTSeq counts.
HTSeq(Anders et al., Bioinformatics, 2015) was applied for obtain HTSeq counts.
Genome_build: hg19
Supplementary_files_format_and_content: HTSeq counts from RNA-seq samples

molecule: polyA RNA

source_name: PBMCs

growth_protocol: Blood samples were collected from the healthy subjects, Seronegative subjects and COVID-19 patients.

extract_protocol:
The buffy coat was extracted by centrifuge after blood sample collection and RBC was removed using RBC lysis buffer in the buffy coat. Total RNA was isolated with TRIzol reagent.
Libraries for sequencing were prepared with TruSeq Stranded mRNA Kit following standard Illumina protocols.

tag: age

tag: gender

value: Male

tag: diseas state

value: highly exposed, Seronegative

tag: severity

value: Seronegative, highly exposed

tag: location

value: PBMC


title: M_P7_normal_mesench_1_DC35_I12

status: Public on May 27 2021

city: Kensington

first: Fabio

last: Zanini

state: NSW

address: High and Botany St

country: Australia

institute: University of New South Wales

data_processing:
Mapping against human genome with VEEV-TC83-GFP added as an additional chromosome (using STAR 2.5.2b)
Counting gene expression using htseq-count 0.10
Genome_build: GRCh38
Supplementary_files_format_and_content: Counts table: raw read counts, not notmalized, rows are gene names, columns are cell names. Metadata file: rows are cell names, columns are metadata.

organism: Mus musculus

source_name: distal lung

extract_protocol:
no extraction
plate-based illumina-compatible Tn5 transposase single cell RNA-Seq

tag: sequencing run

value: M

tag: plate

tag: well

tag: timepoint

tag: treatment

value: normal

value: mesenchymal

tag: cell subtype

value: Myofibroblast

tag: mousename

tag: coverage

tag: number of genes


title: RNAAtlas299_polyA_RNA [RNA_AT129]

source_name: Brain parietal cortex tissue

tag: sample id

tag: sample id [deprecated]

tag: sample type

tag: organ system


title: B_209_Seronegative

tag: age

tag: gender

value: Female

tag: cell type


title: RNAAtlas299_total_RNA [RNA_AT129]


title: Caco2 screen 1 initial population

status: Public on May 28 2021

city: Cambridge

first: John

middle: G

last: Doench

state: MA

address: 75 Ames St.

department: Genetic Perturbation Platform

institute: Broad Institute

library_source: genomic

data_processing:
Raw read counts were retrieved (from corresponding authors for publicly available data; from sequencing data using PoolQ version 3.2.9-3.2.11 for new data generated for Rebendenne et al, 2021)
Read counts were log-normalized, then averaged across conditions if applicable
Log-fold changes were calculated relative to pDNA
Fit a natural cubic spline between the control and infected conditions and calculated residuals from this spline (anchors package)
Z-scored residuals at the guide-level (anchors package)
Averaged across guides and conditions to get gene-level average z-score (anchors package)
Applied filter based on number of guides per gene then ranked genes where a rank of 1 was assigned to the top resistance hit
Genome_build: Vero-E6 samples: NCBI Chlorocebus_sabeus_1.1 primary assembly; all other samples: NCBI GRCh38 primary assembly
Supplementary_files_format_and_content: Spreadsheets with data from each individual screen structured such as that sheet 1: gene symbols with gene-level average z-scores and ranks for each screen, sheet 2: raw read counts, sheet 3: guide-gene annotation mapping
Supplementary_files_format_and_content: One summarized spreadsheet (Supplementary_Data_2_all_primary_KO.xlsx) with gene-level avrage z-scores and ranks for all screens being compared in meta-analysis

molecule: genomic DNA

source_name: Caco-2 cell line

growth_protocol: Dulbecco's modified Eagle medium (DMEM) supplemented with 10% foetal bovine serum and penicillin/streptomycin, 37°C, 5%CO2

extract_protocol:
NucleoSpin Blood XL kit as per the manufacturer's instructions
For PCR amplification, gDNA was divided into 100 μL reactions such that each well had at most 10 μg of gDNA. Plasmid DNA (pDNA) was also included at a maximum of 100 pg per well. Per 96 well plate, a master mix consisted of 150 μL DNA Polymerase (Titanium Taq; Takara), 1 mL of 10x buffer, 800 μL of dNTPs (Takara), 50 μL of P5 stagger primer mix (stock at 100 μM concentration), 500 μL of DMSO, and water to bring the final volume to 4 mL. Each well consisted of 50 μL gDNA plus water, 40 μL PCR master mix, and 10 μL of a uniquely barcoded P7 primer (stock at 5 μM concentration). PCR cycling conditions were as follows: an initial 1 min at 95 °C; followed by 30 s at 94 °C, 30 s at 52.5 °C, 30 s at 72 °C, for 28 cycles; and a final 10 min extension at 72 °C. PCR primers were synthesized at Integrated DNA Technologies (IDT). PCR products were purified with Agencourt AMPure XP SPRI beads according to manufacturer’s instructions (Beckman Coulter, A63880). Prior to sequencing the sample was quantitated by qPCR and diluted to 2nM. 5 µL of the  sample was then further diluted and denatured with 5 µL 0.1N NaOH and 490 µL HT1 buffer (Illumina). Samples were sequenced on a HiSeq2500 HighOutput (Illumina) with a 5% spike-in of PhiX.

treatment_protocol: Infection with SARS-CoV-2 (BetaCoV/France/IDF0372/2020 isolate), MOI 0.005

tag: cell line

value: Caco-2 cell line

tag: oerturbation type

value: CRISPR knock-out

tag: crispr library

value: Brunello library

tag: infected with sars-cov-2?

value: NO


title: Calu3 Gattinara screen 4.1 resistant population

source_name: Calu-3 cell line

value: Calu-3 cell line

value: Gattinara library

value: YES


title: RNAAtlas297_polyA_RNA [RNA_AT127]

source_name: Brain striatum tissue

value: tissue

value: Central Nervous System


title: RNAAtlas297_total_RNA [RNA_AT127]


title: RNAAtlas300_total_RNA [RNA_AT130]


title: RNAAtlas296_polyA_RNA [RNA_AT126]

source_name: Brain frontal cortex tissue


title: RNAAtlas295_total_RNA [RNA_AT125]

source_name: Brain stem tissue


title: H9_RIF1shRNA_HiC

status: Public on Apr 26 2021

city: Tallahassee

first: David

middle: M

last: Gilbert

state: FL

address: 319 Stadium Drive

department: Department of Biological Science

institute: Florida State University

description:
Hi-C
H9_shRNA_RIF1KD_100k.cool

data_processing:
Repli-Seq experiments that are marked E and L were analysed according to (Marchal et al., 2018 PMID: 29599440). High-resolution Repli-Seq analysis was performed according to (Zhao et al., 2020 PMID: 32209126). Single-cell repli-seq reads were split according to the barcode list provided in the accompanying manuscript using awk. The subsequent analyses and construction of binarised arrays were performed according to (Dileep et al., 2018, PMID: 29382831). The Hi-C experiments were aligned and deduplicated using HiCUP (https://www.bioinformatics.babraham.ac.uk/projects/hicup/). The subsequent bam files were converted to pair text files using 4DN DCIC utility bam2pairs. Pairs were loaded into cooler at various bin sizes for downstream analyses. ChIP-seq reads were aligned using bowtie-2 to hg38 and PCR duplicates were removed using samtools markdup. Peak calling and fold enrichment over input were calculated using MACS2. In the cases where drosophila spike-in was used the datasets to be compared against each other (e.g. WT vs KO) were normalised according to (Orlando et al 2014, Cell Reports, PMID: 25437568).RNA-seq reads were aligned using STAR. The gene annotation for genome build GRCh38.p10 used for alignment was downloaded from Ensembl. Single cell RNA-seq was aligned to GRCh38 using 10X Genomics spaceranger v1.0.0. The gene count matrix output was used as input for Seurat v 4.0 for further downstream analyses.
Genome_build: hg38

source_name: H9 hESCs

growth_protocol: H9 hESCs were grown in feeder free conditions on Geltrex matrix (Thermo Fisher A14133) coated dishes in StemPro (Thermo Fisher A100701) media according to manufacturer's specifications. hESCs were passaged with ReLeSR (StemCell Technologies 05872) according to manufacturer’s specifications.

extract_protocol:
For cell lysis, 550 μl lysis buffer (500 μl 10 mM Tris-HCl pH8.0, 10 mM NaCl, 0.2% Ige cal CA630; 50 μl protease inhibitors (Sigma, St. Louis, MO ) were added to one batch of cells (~ 25 million cells). Cells were incubated on ice for at least 15 minutes. Next, cells were lysed with a Dounce homogenizer by moving the pestle A up and down 10 times, incubating on ice for one minute followed by 10 more strokes with the pestle. The suspension was spun down for 5 minutes at 5000 rpm at RT.
Cells were prepared and processed for Hi-C as previously described (PMID: 19815776)  using DpnII for digestion.

treatment_protocol: Cells were transduced with lentivirus expressing RIF1 shRNA and selected with puromycin.

value: human embryonic stem cell line

tag: genotype

value: RIF1 shRNA

tag: chip antibody


title: RNAAtlas294_total_RNA [RNA_AT124]

source_name: Brain cerebellum tissue


title: RNAAtlas298_polyA_RNA [RNA_AT128]


title: RNAAtlas295_polyA_RNA [RNA_AT125]


title: RNAAtlas292_total_RNA [RNA_AT122]

source_name: adrenal tissue

value: Endocrine System


title: RNAAtlas293_polyA_RNA [RNA_AT123]

source_name: stomach tissue

value: Gastrointestinal System


title: RNAAtlas293_total_RNA [RNA_AT123]


title: RNAAtlas294_polyA_RNA [RNA_AT124]


title: RNAAtlas291_total_RNA [RNA_AT121]

source_name: cervix tissue

value: Female Reproductive System


title: RNAAtlas292_polyA_RNA [RNA_AT122]


title: RNAAtlas286_total_RNA [RNA_AT116]

source_name: skeletal muscle tissue

value: Skeletal Muscle System


title: RNAAtlas290_polyA_RNA [RNA_AT120]

source_name: bladder tissue

value: Urethral System


title: RNAAtlas286_polyA_RNA [RNA_AT116]


title: RNAAtlas289_total_RNA [RNA_AT119]

source_name: prostate tissue

value: Male Reproductive System


title: RNAAtlas290_total_RNA [RNA_AT120]


title: RNAAtlas287_polyA_RNA [RNA_AT117]

source_name: small intestine tissue


title: RNAAtlas288_polyA_RNA [RNA_AT118]

source_name: colon tissue


title: RNAAtlas287_total_RNA [RNA_AT117]


title: RNAAtlas291_polyA_RNA [RNA_AT121]


title: RNAAtlas285_total_RNA [RNA_AT115]

source_name: kidney tissue

value: Renal System


title: RNAAtlas285_polyA_RNA [RNA_AT115]


title: RNAAtlas288_total_RNA [RNA_AT118]


title: RNAAtlas284_polyA_RNA [RNA_AT114]

source_name: ovary tissue


title: RNAAtlas282_total_RNA [RNA_AT112]

source_name: spleen tissue

value: Lymphatic System


title: RNAAtlas283_total_RNA [RNA_AT113]

source_name: testicle tissue


title: RNAAtlas284_total_RNA [RNA_AT114]


title: RNAAtlas283_polyA_RNA [RNA_AT113]


title: RNAAtlas281_total_RNA [RNA_AT111]

source_name: lung tissue

value: Pulmonary System


title: RNAAtlas280_polyA_RNA [RNA_AT110]

source_name: heart tissue

value: Cardiac System


title: RNAAtlas282_polyA_RNA [RNA_AT112]


title: RNAAtlas280_total_RNA [RNA_AT110]


title: RNAAtlas281_polyA_RNA [RNA_AT111]


title: RNAAtlas279_polyA_RNA [RNA_AT109]

source_name: thymus tissue

value: Hematopoietic System


title: RNAAtlas279_total_RNA [RNA_AT109]


title: RNAAtlas278_total_RNA [RNA_AT108]

source_name: brain tissue


title: RNAAtlas278_polyA_RNA [RNA_AT108]


title: RNAAtlas289_polyA_RNA [RNA_AT119]


title: RNAAtlas274_total_RNA [RNA_AT104]

source_name: breast tissue


title: RNAAtlas275_total_RNA [RNA_AT105]

source_name: pancreas tissue


title: RNAAtlas277_total_RNA [RNA_AT107]

source_name: liver tissue

value: Hepatic System


title: RNAAtlas277_polyA_RNA [RNA_AT107]


title: RNAAtlas276_total_RNA [RNA_AT106]

source_name: adipose tissue

value: Adipose System


title: RNAAtlas272_polyA_RNA [RNA_AT102]

source_name: lymph node tissue

value: tissue


title: RNAAtlas273_total_RNA [RNA_AT103]

source_name: placenta tissue

value: Placenta System


title: RNAAtlas275_polyA_RNA [RNA_AT105]


title: RNAAtlas276_polyA_RNA [RNA_AT106]


title: RNAAtlas270_polyA_RNA [RNA_AT100]

source_name: thyroid tissue


title: RNAAtlas273_polyA_RNA [RNA_AT103]


title: RNAAtlas267_total_RNA [RNA_AT097]

source_name: right atrium tissue


title: RNAAtlas267_polyA_RNA [RNA_AT097]


title: RNAAtlas271_total_RNA [RNA_AT101]

source_name: uterus tissue


title: RNAAtlas268_polyA_RNA [RNA_AT098]

source_name: right ventricle tissue


title: RNAAtlas271_polyA_RNA [RNA_AT101]


title: RNAAtlas266_polyA_RNA [RNA_AT096]

source_name: left ventricle tissue


title: RNAAtlas265_polyA_RNA [RNA_AT095]

source_name: left atruim tissue


title: RNAAtlas272_total_RNA [RNA_AT102]


title: RNAAtlas268_total_RNA [RNA_AT098]


title: RNAAtlas264_polyA_RNA [RNA_AT094]

source_name: pericardium tissue


title: RNAAtlas269_polyA_RNA [RNA_AT099]

source_name: fallopian tube tissue


title: RNAAtlas266_total_RNA [RNA_AT096]


title: RNAAtlas269_total_RNA [RNA_AT099]


title: RNAAtlas265_total_RNA [RNA_AT095]


title: RNAAtlas264_total_RNA [RNA_AT094]


title: RNAAtlas270_total_RNA [RNA_AT100]


title: RNAAtlas260_polyA_RNA [RNA_AT090]

source_name: distal colon tissue


title: RNAAtlas261_polyA_RNA [RNA_AT091]

source_name: esophagus tissue


title: RNAAtlas263_polyA_RNA [RNA_AT093]

source_name: vena cava tissue


title: RNAAtlas262_polyA_RNA [RNA_AT092]

source_name: trachea tissue


title: RNAAtlas263_total_RNA [RNA_AT093]


title: RNAAtlas274_polyA_RNA [RNA_AT104]

source_name: breast tissue


title: RNAAtlas258_polyA_RNA [RNA_AT088]

source_name: duodenum tissue


title: RNAAtlas260_total_RNA [RNA_AT090]


title: RNAAtlas261_total_RNA [RNA_AT091]


title: RNAAtlas259_total_RNA [RNA_AT089]

source_name: proximal colon tissue


title: RNAAtlas259_polyA_RNA [RNA_AT089]


title: RNAAtlas256_polyA_RNA [RNA_AT086]

source_name: ileum tissue


title: RNAAtlas253_total_RNA [RNA_AT298]

source_name: CD14-CD15+ granulocytes

value: cell type


title: RNAAtlas257_polyA_RNA [RNA_AT087]

source_name: jejunum tissue


title: RNAAtlas258_total_RNA [RNA_AT088]


title: RNAAtlas257_total_RNA [RNA_AT087]


title: RNAAtlas252_total_RNA [RNA_AT297]

source_name: CD10+ granulocytes


title: RNAAtlas256_total_RNA [RNA_AT086]


title: RNAAtlas262_total_RNA [RNA_AT092]


title: RNAAtlas250_total_RNA [RNA_AT295]

source_name: CD56+ NK cells


title: RNAAtlas249_polyA_RNA [RNA_AT294]

source_name: CD14+ Monocytes


title: RNAAtlas250_polyA_RNA [RNA_AT295]


title: RNAAtlas249_total_RNA [RNA_AT294]


title: RNAAtlas248_polyA_RNA [RNA_AT293]

source_name: CD3+ T cells


title: RNAAtlas246_polyA_RNA [RNA_AT278]

source_name: Umbilical Artery Smooth Muscle Cell

value: Umbilical Cord System


title: RNAAtlas245_polyA_RNA [RNA_AT277]

source_name: Umbilical Vein Smooth Muscle Cell


title: RNAAtlas247_polyA_RNA [RNA_AT292]

source_name: CB CD34+lin-


title: RNAAtlas244_polyA_RNA [RNA_AT276]

source_name: Umbilical Artery Endothelial Cell


title: RNAAtlas244_total_RNA [RNA_AT276]


title: RNAAtlas251_total_RNA [RNA_AT296]

source_name: CD19+ B-cells


title: RNAAtlas242_polyA_RNA [RNA_AT274]

source_name: Mammary Fibroblast


title: RNAAtlas242_total_RNA [RNA_AT274]


title: RNAAtlas241_total_RNA [RNA_AT273]

source_name: Mammary Epithelial Cell


title: RNAAtlas243_polyA_RNA [RNA_AT275]

source_name: Umbilical Vein Endothelial Cell


title: RNAAtlas243_total_RNA [RNA_AT275]


title: RNAAtlas240_total_RNA [RNA_AT272]

source_name: Mammary Endothelial Cell


title: RNAAtlas251_polyA_RNA [RNA_AT296]


title: RNAAtlas239_polyA_RNA [RNA_AT271]

source_name: Vertebral Mesenchymal Stem Cell

value: Mesenchymal Stem System


title: RNAAtlas240_polyA_RNA [RNA_AT272]


title: RNAAtlas241_polyA_RNA [RNA_AT273]


title: RNAAtlas248_total_RNA [RNA_AT293]


title: RNAAtlas247_total_RNA [RNA_AT292]


title: RNAAtlas238_total_RNA [RNA_AT270]

source_name: Pulmonary Mesenchymal Stel Cell


title: RNAAtlas237_total_RNA [RNA_AT269]

source_name: Umbilical Mesenchymal Stem Cell


title: RNAAtlas246_total_RNA [RNA_AT278]


title: RNAAtlas237_polyA_RNA [RNA_AT269]


title: RNAAtlas245_total_RNA [RNA_AT277]


title: RNAAtlas238_polyA_RNA [RNA_AT270]


title: RNAAtlas236_total_RNA [RNA_AT268]

source_name: Mesenchymal Stem Cell-hepatic


title: RNAAtlas236_polyA_RNA [RNA_AT268]


title: RNAAtlas235_total_RNA [RNA_AT267]

source_name: Mesenchymal Stem Cell-adipose


title: RNAAtlas234_polyA_RNA [RNA_AT266]

source_name: Mesenchymal Stem Cell-bone marrow


title: RNAAtlas235_polyA_RNA [RNA_AT267]


title: RNAAtlas234_total_RNA [RNA_AT266]


title: RNAAtlas233_total_RNA [RNA_AT265]

source_name: Ovarian Fibroblast


title: RNAAtlas239_total_RNA [RNA_AT271]


title: RNAAtlas233_polyA_RNA [RNA_AT265]


title: RNAAtlas232_total_RNA [RNA_AT264]

source_name: Ovarian Surface Epithelial Cell


title: RNAAtlas230_polyA_RNA [RNA_AT262]

source_name: Preadipocyte-subcutaneous


title: RNAAtlas232_polyA_RNA [RNA_AT264]


title: RNAAtlas228_total_RNA [RNA_AT260]

source_name: Adipose Microvascular Endothelial Cell


title: RNAAtlas230_total_RNA [RNA_AT262]


title: RNAAtlas231_polyA_RNA [RNA_AT263]

source_name: Ovarian Microvascular Endothelial Cell


title: RNAAtlas231_total_RNA [RNA_AT263]


title: RNAAtlas229_total_RNA [RNA_AT261]

source_name: Preadipocyte-visceral


title: RNAAtlas229_polyA_RNA [RNA_AT261]


title: RNAAtlas228_polyA_RNA [RNA_AT260]


title: RNAAtlas296_total_RNA [RNA_AT126]

source_name: Brain frontal cortex tissue

value: Central Nervous System


title: RNAAtlas227_total_RNA [RNA_AT259]

source_name: Chorionic Mesenchymal Stromal Cell


title: RNAAtlas226_total_RNA [RNA_AT258]

source_name: Amniotic Mesenchymal Stromal Cell


title: RNAAtlas227_polyA_RNA [RNA_AT259]


title: RNAAtlas225_polyA_RNA [RNA_AT257]

source_name: Villous Mesenchymal Fibroblast


title: RNAAtlas224_total_RNA [RNA_AT256]

source_name: Villous Trophoblast


title: RNAAtlas225_total_RNA [RNA_AT257]


title: RNAAtlas226_polyA_RNA [RNA_AT258]


title: RNAAtlas223_total_RNA [RNA_AT255]

source_name: Amniotic Epithelial Cell


title: RNAAtlas224_polyA_RNA [RNA_AT256]


title: RNAAtlas222_total_RNA [RNA_AT254]

source_name: Myometrial Smooth Muscle Cell

value: Female Reproductive System


title: RNAAtlas223_polyA_RNA [RNA_AT255]


title: RNAAtlas222_polyA_RNA [RNA_AT254]


title: RNAAtlas221_polyA_RNA [RNA_AT253]

source_name: Endometrial Micorvascular Endothelial Cell


title: RNAAtlas221_total_RNA [RNA_AT253]


title: RNAAtlas220_polyA_RNA [RNA_AT252]

source_name: Myometrial Microvascular Endothelial Cell


title: RNAAtlas219_polyA_RNA [RNA_AT251]

source_name: Ocular Choroid Fibroblast

value: Ocular System


title: RNAAtlas218_total_RNA [RNA_AT250]

source_name: Trabecular Meshwork Cell


title: RNAAtlas219_total_RNA [RNA_AT251]


title: RNAAtlas220_total_RNA [RNA_AT252]


title: RNAAtlas218_polyA_RNA [RNA_AT250]


title: RNAAtlas215_total_RNA [RNA_AT247]

source_name: Iris Pigment Epithelial Cell


title: RNAAtlas216_total_RNA [RNA_AT248]

source_name: Conjunctival Fibroblast


title: RNAAtlas215_polyA_RNA [RNA_AT247]


title: RNAAtlas214_polyA_RNA [RNA_AT246]

source_name: Lens Epithelial Cell


title: RNAAtlas216_polyA_RNA [RNA_AT248]


title: RNAAtlas217_total_RNA [RNA_AT249]

source_name: Non-Pigment Ciliary Epithelial Cell


title: RNAAtlas214_total_RNA [RNA_AT246]


title: RNAAtlas212_total_RNA [RNA_AT244]

source_name: Keratocyte


title: RNAAtlas212_polyA_RNA [RNA_AT244]


title: RNAAtlas211_total_RNA [RNA_AT243]

source_name: Corneal Epithelial Cell


title: RNAAtlas213_total_RNA [RNA_AT245]

source_name: Retinal Pigment Epithelial Cell


title: RNAAtlas217_polyA_RNA [RNA_AT249]


title: RNAAtlas210_polyA_RNA [RNA_AT242]

source_name: pericardial fibroblast


title: RNAAtlas209_total_RNA [RNA_AT241]

source_name: Cardiac Fibroblast fetal atrial


title: RNAAtlas211_polyA_RNA [RNA_AT243]


title: RNAAtlas209_polyA_RNA [RNA_AT241]


title: RNAAtlas210_total_RNA [RNA_AT242]


title: RNAAtlas208_polyA_RNA [RNA_AT240]

source_name: Cardiac Fibroblast adult


title: RNAAtlas206_polyA_RNA [RNA_AT238]

source_name: Cardiac Fibroblast-adult ventrical


title: RNAAtlas205_total_RNA [RNA_AT237]

source_name: Cardiac Fibroblast


title: RNAAtlas204_polyA_RNA [RNA_AT236]

source_name: Cardiac Myocyte-adult


title: RNAAtlas203_polyA_RNA [RNA_AT235]

source_name: Cardiac Myocyte


title: RNAAtlas202_polyA_RNA [RNA_AT234]

source_name: Aortic Fibroblast


title: RNAAtlas202_total_RNA [RNA_AT234]


title: RNAAtlas206_total_RNA [RNA_AT238]


title: RNAAtlas201_total_RNA [RNA_AT233]

source_name: Aortic Smooth Muscle Cell


title: RNAAtlas200_total_RNA [RNA_AT232]

source_name: Aortic Endothelial Cell


title: RNAAtlas204_total_RNA [RNA_AT236]


title: RNAAtlas207_total_RNA [RNA_AT239]

source_name: Cardiac Fibroblast-adult atrial


title: RNAAtlas199_polyA_RNA [RNA_AT231]

source_name: Coronary Artery Endothelial cell


title: RNAAtlas203_total_RNA [RNA_AT235]


title: RNAAtlas207_polyA_RNA [RNA_AT239]


title: RNAAtlas197_total_RNA [RNA_AT229]

source_name: Splenic Fibroblast


title: RNAAtlas201_polyA_RNA [RNA_AT233]


title: RNAAtlas194_total_RNA [RNA_AT226]

source_name: Hepatic Stellate Cell


title: RNAAtlas194_polyA_RNA [RNA_AT226]


title: RNAAtlas205_polyA_RNA [RNA_AT237]


title: RNAAtlas213_polyA_RNA [RNA_AT245]


title: RNAAtlas197_polyA_RNA [RNA_AT229]


title: RNAAtlas198_polyA_RNA [RNA_AT230]

source_name: Cardiac Microvascular Endothelial Cell


title: RNAAtlas198_total_RNA [RNA_AT230]


title: RNAAtlas196_total_RNA [RNA_AT228]

source_name: Splenic Endothelial cell


title: RNAAtlas193_polyA_RNA [RNA_AT225]

source_name: Hepatocyte


title: RNAAtlas196_polyA_RNA [RNA_AT228]


title: RNAAtlas191_total_RNA [RNA_AT223]

source_name: Anulus Pulposus Cell

value: Skeletal System


title: RNAAtlas195_polyA_RNA [RNA_AT227]

source_name: Gallbladder Fibroblast


title: RNAAtlas195_total_RNA [RNA_AT227]


title: RNAAtlas192_total_RNA [RNA_AT224]

source_name: Hepatic Sinusoidal Endothelial Cell


title: RNAAtlas193_total_RNA [RNA_AT225]


title: RNAAtlas189_total_RNA [RNA_AT221]

source_name: Synoviocyte


title: RNAAtlas200_polyA_RNA [RNA_AT232]


title: RNAAtlas199_total_RNA [RNA_AT231]


title: RNAAtlas192_polyA_RNA [RNA_AT224]


title: RNAAtlas189_polyA_RNA [RNA_AT221]


title: RNAAtlas191_polyA_RNA [RNA_AT223]


title: RNAAtlas188_total_RNA [RNA_AT220]

source_name: Osteoblast - femural


title: RNAAtlas188_polyA_RNA [RNA_AT220]


title: RNAAtlas187_total_RNA [RNA_AT219]

source_name: Calvarial Osteoblast


title: RNAAtlas190_total_RNA [RNA_AT222]

source_name: Nucleus Pulposus Cell


title: RNAAtlas186_polyA_RNA [RNA_AT218]

source_name: Seminal Vesicle Fibroblast

value: Male Reproductive System


title: RNAAtlas186_total_RNA [RNA_AT218]


title: RNAAtlas187_polyA_RNA [RNA_AT219]


title: RNAAtlas184_polyA_RNA [RNA_AT216]

source_name: Seminal Vesicle Microvascular Endothelial Cell


title: RNAAtlas185_polyA_RNA [RNA_AT217]

source_name: Seminal Vesicle Epithelial Cell


title: RNAAtlas184_total_RNA [RNA_AT216]


title: RNAAtlas183_polyA_RNA [RNA_AT215]

source_name: Prostate Fibroblast


title: RNAAtlas183_total_RNA [RNA_AT215]


title: RNAAtlas181_total_RNA [RNA_AT213]

source_name: Prostate Microvascular Endothelial Cell


title: RNAAtlas181_polyA_RNA [RNA_AT213]


title: RNAAtlas182_total_RNA [RNA_AT214]

source_name: Prostate Epithelial Cell


title: RNAAtlas182_polyA_RNA [RNA_AT214]


title: RNAAtlas190_polyA_RNA [RNA_AT222]


title: RNAAtlas179_total_RNA [RNA_AT211]

source_name: Bladder Smooth Muscle Cell

value: Urethral System


title: RNAAtlas185_total_RNA [RNA_AT217]


title: RNAAtlas178_total_RNA [RNA_AT210]

source_name: Bladder Microvascular Endothelial Cell


title: RNAAtlas178_polyA_RNA [RNA_AT210]


title: RNAAtlas177_polyA_RNA [RNA_AT209]

source_name: Renal Mesangial Cell

value: Renal System


title: RNAAtlas176_polyA_RNA [RNA_AT208]

source_name: Renal Epithelial Cell


title: RNAAtlas176_total_RNA [RNA_AT208]


title: RNAAtlas177_total_RNA [RNA_AT209]


title: RNAAtlas174_total_RNA [RNA_AT206]

source_name: Renal Proximal Tubular Epithelial Cell


title: RNAAtlas180_total_RNA [RNA_AT212]

source_name: Urothelial Cell


title: RNAAtlas174_polyA_RNA [RNA_AT206]


title: RNAAtlas173_total_RNA [RNA_AT205]

source_name: Renal Glomerular Endothelial Cell


title: RNAAtlas173_polyA_RNA [RNA_AT205]


title: RNAAtlas169_polyA_RNA [RNA_AT201]

source_name: Adrenal Fibroblasts

value: Endocrine System


title: RNAAtlas171_total_RNA [RNA_AT203]

source_name: Pancreatic Stallate Cell


title: RNAAtlas167_polyA_RNA [RNA_AT199]

source_name: Adrenal Microvascular Endothelial Cell


title: RNAAtlas168_total_RNA [RNA_AT200]

source_name: Adrenal Cortical Cell


title: RNAAtlas179_polyA_RNA [RNA_AT211]


title: RNAAtlas170_polyA_RNA [RNA_AT202]

source_name: Thyroid Fibroblasts


title: RNAAtlas170_total_RNA [RNA_AT202]


title: RNAAtlas167_total_RNA [RNA_AT199]


title: RNAAtlas171_polyA_RNA [RNA_AT203]


title: RNAAtlas166_total_RNA [RNA_AT198]

source_name: Skeletal Muscle Myoblast

value: Skeletal Muscle System


title: RNAAtlas180_polyA_RNA [RNA_AT212]


title: RNAAtlas172_polyA_RNA [RNA_AT204]

source_name: Thymus Fibroblasts


title: RNAAtlas175_polyA_RNA [RNA_AT207]

source_name: Renal Cortical Epithelial Cell


title: RNAAtlas166_polyA_RNA [RNA_AT198]


title: RNAAtlas165_total_RNA [RNA_AT197]

source_name: Skeletal Muscle Satellite Cell


title: RNAAtlas165_polyA_RNA [RNA_AT197]


title: RNAAtlas164_total_RNA [RNA_AT196]

source_name: Skeletal Muscle Cell


title: RNAAtlas162_total_RNA [RNA_AT194]

source_name: Bronchial Smooth Muscle Cell

value: Pulmonary System


title: RNAAtlas163_total_RNA [RNA_AT195]

source_name: Tracheal Smooth Muscle Cell


title: RNAAtlas175_total_RNA [RNA_AT207]


title: RNAAtlas172_total_RNA [RNA_AT204]


title: RNAAtlas164_polyA_RNA [RNA_AT196]


title: RNAAtlas169_total_RNA [RNA_AT201]


title: RNAAtlas163_polyA_RNA [RNA_AT195]


title: RNAAtlas168_polyA_RNA [RNA_AT200]


title: RNAAtlas159_polyA_RNA [RNA_AT191]

source_name: Small Airway Epithelial Cell


title: RNAAtlas161_polyA_RNA [RNA_AT193]

source_name: pulmonary Fibroblast-Adult


title: RNAAtlas162_polyA_RNA [RNA_AT194]


title: RNAAtlas158_polyA_RNA [RNA_AT190]

source_name: Tracheal Epithelial Cell


title: RNAAtlas156_total_RNA [RNA_AT188]

source_name: Pulmonary Alveolar Epithelial Cell


title: RNAAtlas157_total_RNA [RNA_AT189]

source_name: Bronchial Epithelial Cell


title: RNAAtlas157_polyA_RNA [RNA_AT189]


title: RNAAtlas160_polyA_RNA [RNA_AT192]

source_name: Pulmonary Fibroblast


title: RNAAtlas159_total_RNA [RNA_AT191]


title: RNAAtlas155_total_RNA [RNA_AT187]

source_name: Pulmonary Artery Fibroblast


title: RNAAtlas155_polyA_RNA [RNA_AT187]


title: RNAAtlas156_polyA_RNA [RNA_AT188]


title: RNAAtlas154_polyA_RNA [RNA_AT186]

source_name: Pulmonary Artery Smooth Muscle Cell


title: RNAAtlas153_total_RNA [RNA_AT185]

source_name: Pulmonary Artery Endothelial Cell


title: RNAAtlas154_total_RNA [RNA_AT186]


title: RNAAtlas150_polyA_RNA [RNA_AT182]

source_name: Colonic Epithelial Cell total RNA

value: Gastrointestinal System


title: RNAAtlas151_polyA_RNA [RNA_AT183]

source_name: Rectal Smooth Muscle Cell


title: RNAAtlas152_polyA_RNA [RNA_AT184]

source_name: Pulmonary Microvascular Endothelial Cell


title: RNAAtlas160_total_RNA [RNA_AT192]


title: RNAAtlas152_total_RNA [RNA_AT184]


title: RNAAtlas149_total_RNA [RNA_AT181]

source_name: Colonic Smooth Muscle Cell


title: RNAAtlas147_total_RNA [RNA_AT179]

source_name: Intestinal Fibroblasts


title: RNAAtlas158_total_RNA [RNA_AT190]


title: RNAAtlas148_polyA_RNA [RNA_AT180]

source_name: Colonic Microvascular Endothelial Cell


title: RNAAtlas148_total_RNA [RNA_AT180]


title: RNAAtlas147_polyA_RNA [RNA_AT179]


title: RNAAtlas145_total_RNA [RNA_AT177]

source_name: Gastric Smooth Muscle Cell


title: RNAAtlas153_polyA_RNA [RNA_AT185]


title: RNAAtlas151_total_RNA [RNA_AT183]


title: RNAAtlas146_polyA_RNA [RNA_AT178]

source_name: Intestinal Smooth Muscle Cell


title: RNAAtlas144_polyA_RNA [RNA_AT176]

source_name: Esophageal Fibroblasts


title: RNAAtlas149_polyA_RNA [RNA_AT181]


title: RNAAtlas145_polyA_RNA [RNA_AT177]


title: RNAAtlas144_total_RNA [RNA_AT176]


title: RNAAtlas140_polyA_RNA [RNA_AT172]

source_name: Gingival Fibroblast

value: Oral System


title: RNAAtlas140_total_RNA [RNA_AT172]


title: RNAAtlas142_total_RNA [RNA_AT174]

source_name: Esophageal Smooth Muscle Cell


title: RNAAtlas141_total_RNA [RNA_AT173]

source_name: Periodontal Ligament Fibroblast


title: RNAAtlas143_polyA_RNA [RNA_AT175]

source_name: Esophageal Epithelial Cell


title: RNAAtlas141_polyA_RNA [RNA_AT173]


title: RNAAtlas142_polyA_RNA [RNA_AT174]


title: RNAAtlas161_total_RNA [RNA_AT193]

source_name: pulmonary Fibroblast-Adult


title: RNAAtlas138_total_RNA [RNA_AT170]

source_name: Tonsil Fibroblasts total RNA

value: Tonsil System


title: RNAAtlas139_polyA_RNA [RNA_AT171]

source_name: Oral Keratinocyte


title: RNAAtlas137_total_RNA [RNA_AT169]

source_name: Tonsil Epithelial Cell


title: RNAAtlas137_polyA_RNA [RNA_AT169]


title: RNAAtlas139_total_RNA [RNA_AT171]


title: RNAAtlas135_polyA_RNA [RNA_AT167]

source_name: Lymphatic Fibroblast

value: Lymphatic System


title: RNAAtlas136_total_RNA [RNA_AT168]

source_name: Tonsil Endothelial Cell

value: cell type


title: RNAAtlas132_polyA_RNA [RNA_AT164]

source_name: Hair Follicular Inner Root Sheath Cell

value: Hair System


title: RNAAtlas132_total_RNA [RNA_AT164]


title: RNAAtlas146_total_RNA [RNA_AT178]


title: RNAAtlas133_polyA_RNA [RNA_AT165]

source_name: Hair Follicular Keratinocyte


title: RNAAtlas136_polyA_RNA [RNA_AT168]


title: RNAAtlas135_total_RNA [RNA_AT167]


title: RNAAtlas143_total_RNA [RNA_AT175]


title: RNAAtlas138_polyA_RNA [RNA_AT170]


title: RNAAtlas130_polyA_RNA [RNA_AT162]

source_name: Hair Germinal Matrix Cell


title: RNAAtlas134_total_RNA [RNA_AT166]

source_name: Lymphatic Endothelial Cell


title: RNAAtlas133_total_RNA [RNA_AT165]


title: RNAAtlas129_total_RNA [RNA_AT161]

source_name: Hair Dermal Papilla Cell


title: RNAAtlas134_polyA_RNA [RNA_AT166]


title: RNAAtlas128_polyA_RNA [RNA_AT160]

source_name: Dermal Fibroblast-fetal Mitomycin C treated

value: Dermal System


title: RNAAtlas131_polyA_RNA [RNA_AT163]

source_name: Hair Follicular Outer Root Sheath Cell


title: RNAAtlas130_total_RNA [RNA_AT162]


title: RNAAtlas128_total_RNA [RNA_AT160]


title: RNAAtlas129_polyA_RNA [RNA_AT161]


title: RNAAtlas131_total_RNA [RNA_AT163]


title: RNAAtlas126_polyA_RNA [RNA_AT158]

source_name: Dermal Fibroblast-neonate


title: RNAAtlas127_total_RNA [RNA_AT159]

source_name: Dermal Fibroblast-adult


title: RNAAtlas125_total_RNA [RNA_AT157]

source_name: Dermal Fibroblast-fetal


title: RNAAtlas124_total_RNA [RNA_AT156]

source_name: Epidermal Melanocyte- adult


title: RNAAtlas127_polyA_RNA [RNA_AT159]


title: RNAAtlas123_total_RNA [RNA_AT155]

source_name: Epidermal Melanocyte-dark


title: RNAAtlas122_total_RNA [RNA_AT154]

source_name: Epidermal Melanocyte-medium


title: RNAAtlas123_polyA_RNA [RNA_AT155]


title: RNAAtlas126_total_RNA [RNA_AT158]


title: RNAAtlas125_polyA_RNA [RNA_AT157]


title: RNAAtlas120_total_RNA [RNA_AT152]

source_name: Epidermal Keratinocyte-fetal


title: RNAAtlas121_total_RNA [RNA_AT153]

source_name: Epidermal Melanocyte- light


title: RNAAtlas121_polyA_RNA [RNA_AT153]


title: RNAAtlas119_total_RNA [RNA_AT151]

source_name: Epidermal Keratinocyte-adult


title: RNAAtlas120_polyA_RNA [RNA_AT152]


title: RNAAtlas116_total_RNA [RNA_AT148]

source_name: Dermal Microvascular Endothelial Cell


title: RNAAtlas118_total_RNA [RNA_AT150]

source_name: Epidermal Keratinocyte-neonate


title: RNAAtlas114_polyA_RNA [RNA_AT146]

source_name: Astrocytes-mid brain

value: Central Nervous System


title: RNAAtlas119_polyA_RNA [RNA_AT151]


title: RNAAtlas117_total_RNA [RNA_AT149]

source_name: Dermal Lymphatic Endothelial Cell


title: RNAAtlas117_polyA_RNA [RNA_AT149]


title: RNAAtlas112_total_RNA [RNA_AT144]

source_name: Astrocyte-hippocampal


title: RNAAtlas113_total_RNA [RNA_AT145]

source_name: Astrocytes-brain stem cel


title: RNAAtlas110_polyA_RNA [RNA_AT142]

source_name: Astrocyte-cerebellar


title: RNAAtlas118_polyA_RNA [RNA_AT150]


title: RNAAtlas115_total_RNA [RNA_AT147]

source_name: Retinal Astrocyte


title: RNAAtlas111_polyA_RNA [RNA_AT143]

source_name: Astrocyte-spinal cord


title: RNAAtlas113_polyA_RNA [RNA_AT145]


title: RNAAtlas115_polyA_RNA [RNA_AT147]


title: RNAAtlas124_polyA_RNA [RNA_AT156]


title: RNAAtlas116_polyA_RNA [RNA_AT148]


title: RNAAtlas114_total_RNA [RNA_AT146]


title: RNAAtlas109_total_RNA [RNA_AT141]

source_name: Astrocyte


title: RNAAtlas110_total_RNA [RNA_AT142]


title: RNAAtlas122_polyA_RNA [RNA_AT154]


title: RNAAtlas106_polyA_RNA [RNA_AT138]

source_name: Oligodendrocyte Precursor Cell


title: RNAAtlas106_total_RNA [RNA_AT138]


title: RNAAtlas107_total_RNA [RNA_AT139]

source_name: Schwann Cell


title: RNAAtlas105_total_RNA [RNA_AT137]

source_name: Neuron


title: RNAAtlas107_polyA_RNA [RNA_AT139]


title: RNAAtlas112_polyA_RNA [RNA_AT144]


title: RNAAtlas111_total_RNA [RNA_AT143]


title: RNAAtlas102_total_RNA [RNA_AT134]

source_name: Choroid Plexus Epithelial Cell


title: RNAAtlas105_polyA_RNA [RNA_AT137]


title: RNAAtlas101_polyA_RNA [RNA_AT133]

source_name: Brain Vascular Pericyte


title: RNAAtlas099_total_RNA [RNA_AT131]

source_name: Brain Vascular Smooth Muscle Cell


title: RNAAtlas108_total_RNA [RNA_AT140]

source_name: Perineurial Cell


title: RNAAtlas104_total_RNA [RNA_AT136]

source_name: Meningeal Cell


title: RNAAtlas099_polyA_RNA [RNA_AT131]


title: RNAAtlas104_polyA_RNA [RNA_AT136]


title: RNAAtlas100_polyA_RNA [RNA_AT132]

source_name: Brain Vascular Adventitial Fibroblasts


title: RNAAtlas096_total_RNA [RNA_AT011]

source_name: Monocytes

value: Hematopoietic System


title: RNAAtlas102_polyA_RNA [RNA_AT134]


title: RNAAtlas097_polyA_RNA [RNA_AT012]

source_name: Immature monocyte-derived dendritic cells


title: RNAAtlas103_polyA_RNA [RNA_AT135]

source_name: Choroid Plexus Fibroblast


title: RNAAtlas101_total_RNA [RNA_AT133]


title: RNAAtlas093_total_RNA [RNA_AT291]

value: cell line

value: Embryonic stem cells System


title: RNAAtlas098_total_RNA [RNA_AT013]

source_name: Mature monocyte-derived dendritic cells


title: RNAAtlas094_total_RNA [RNA_AT009]

source_name: Alveolar macrophage donor 4


title: RNAAtlas095_total_RNA [RNA_AT010]

source_name: Alveolar macrophage donor 7


title: RNAAtlas093_polyA_RNA [RNA_AT291]


title: RNAAtlas100_total_RNA [RNA_AT132]


title: RNAAtlas108_polyA_RNA [RNA_AT140]


title: RNAAtlas097_total_RNA [RNA_AT012]


title: RNAAtlas096_polyA_RNA [RNA_AT011]


title: RNAAtlas095_polyA_RNA [RNA_AT010]


title: RNAAtlas092_total_RNA [RNA_AT290]

source_name: JY


title: RNAAtlas103_total_RNA [RNA_AT135]


title: RNAAtlas091_total_RNA [RNA_AT288]

source_name: YTS


title: RNAAtlas090_total_RNA [RNA_AT287]

source_name: NKL


title: RNAAtlas090_polyA_RNA [RNA_AT287]


title: RNAAtlas091_polyA_RNA [RNA_AT288]


title: RNAAtlas089_total_RNA [RNA_AT017]


title: RNAAtlas098_polyA_RNA [RNA_AT013]


title: RNAAtlas089_polyA_RNA [RNA_AT017]


title: RNAAtlas088_total_RNA [RNA_AT289]

source_name: Raji Burkitt's Lymphoma

value: cancer cell line


title: RNAAtlas087_total_RNA [RNA_AT286]

source_name: ALL-SIL T-ALL


title: RNAAtlas088_polyA_RNA [RNA_AT289]


title: RNAAtlas086_total_RNA [RNA_AT285]

source_name: JURKAT T-ALL


title: RNAAtlas094_polyA_RNA [RNA_AT009]


title: RNAAtlas083_total_RNA [RNA_AT282]

source_name: MOLT-16 T-ALL


title: RNAAtlas085_total_RNA [RNA_AT284]

source_name: TALL-1 T-ALL


title: RNAAtlas087_polyA_RNA [RNA_AT286]


title: RNAAtlas083_polyA_RNA [RNA_AT282]


title: RNAAtlas085_polyA_RNA [RNA_AT284]


title: RNAAtlas084_total_RNA [RNA_AT283]

source_name: PEER T-ALL


title: RNAAtlas081_total_RNA [RNA_AT280]

source_name: DND-41 T-ALL


title: RNAAtlas082_total_RNA [RNA_AT281]

source_name: HPB-ALL T-ALL


title: RNAAtlas080_polyA_RNA [RNA_AT279]

source_name: LOUCY T-ALL


title: RNAAtlas081_polyA_RNA [RNA_AT280]


title: RNAAtlas079_total_RNA [RNA_AT085]

source_name: UO-31 Renal cancer


title: RNAAtlas084_polyA_RNA [RNA_AT283]


title: RNAAtlas079_polyA_RNA [RNA_AT085]


title: RNAAtlas086_polyA_RNA [RNA_AT285]


title: RNAAtlas078_polyA_RNA [RNA_AT084]

source_name: UACC-62 Melanoma


title: RNAAtlas077_total_RNA [RNA_AT083]

source_name: UACC-257 Melanoma


title: RNAAtlas077_polyA_RNA [RNA_AT083]


title: RNAAtlas076_total_RNA [RNA_AT082]

source_name: U251 CNS cancer


title: RNAAtlas082_polyA_RNA [RNA_AT281]


title: RNAAtlas075_total_RNA [RNA_AT081]

source_name: TK-10 Renal cancer


title: RNAAtlas076_polyA_RNA [RNA_AT082]


title: RNAAtlas074_polyA_RNA [RNA_AT080]

source_name: T-47D Breast cancer

value: Female Reproductive System


title: RNAAtlas073_total_RNA [RNA_AT079]

source_name: SW-620 Colon cancer


title: RNAAtlas080_total_RNA [RNA_AT279]


title: RNAAtlas073_polyA_RNA [RNA_AT079]


title: RNAAtlas070_total_RNA [RNA_AT076]

source_name: SNB-19 CNS cancer


title: RNAAtlas072_polyA_RNA [RNA_AT078]

source_name: SR Leukemia


title: RNAAtlas071_polyA_RNA [RNA_AT077]

source_name: SNB-75 CNS cancer


title: RNAAtlas070_polyA_RNA [RNA_AT076]


title: RNAAtlas071_total_RNA [RNA_AT077]


title: RNAAtlas068_total_RNA [RNA_AT074]

source_name: SK-OV-3 Ovarian cancer


title: RNAAtlas067_total_RNA [RNA_AT073]

source_name: SK-MEL-5 Melanoma


title: RNAAtlas078_total_RNA [RNA_AT084]


title: RNAAtlas072_total_RNA [RNA_AT078]


title: RNAAtlas069_total_RNA [RNA_AT075]

source_name: SN12C Renal cancer

value: Renal System


title: RNAAtlas068_polyA_RNA [RNA_AT074]


title: RNAAtlas066_total_RNA [RNA_AT072]

source_name: SK-MEL-28 Melanoma


title: RNAAtlas067_polyA_RNA [RNA_AT073]


title: RNAAtlas069_polyA_RNA [RNA_AT075]


title: RNAAtlas066_polyA_RNA [RNA_AT072]


title: RNAAtlas065_total_RNA [RNA_AT071]

source_name: SK-MEL-2 Melanoma


title: RNAAtlas064_total_RNA [RNA_AT070]

source_name: SF-539 CNS cancer


title: RNAAtlas064_polyA_RNA [RNA_AT070]


title: RNAAtlas065_polyA_RNA [RNA_AT071]


title: RNAAtlas109_polyA_RNA [RNA_AT141]

source_name: Astrocyte


title: RNAAtlas063_polyA_RNA [RNA_AT069]

source_name: SF-295 CNS cancer


title: RNAAtlas063_total_RNA [RNA_AT069]


title: RNAAtlas062_total_RNA [RNA_AT068]

source_name: SF-268 CNS cancer


title: RNAAtlas061_total_RNA [RNA_AT067]

source_name: RXF-393 Renal cancer


title: RNAAtlas062_polyA_RNA [RNA_AT068]


title: RNAAtlas060_polyA_RNA [RNA_AT066]

source_name: RMPI-8226 Leukemia


title: RNAAtlas059_polyA_RNA [RNA_AT065]

source_name: PC-3 Prostate cancer

value: Male Reproductive System


title: RNAAtlas061_polyA_RNA [RNA_AT067]


title: RNAAtlas058_polyA_RNA [RNA_AT064]

source_name: OVCAR-8 Ovarian cancer


title: RNAAtlas057_polyA_RNA [RNA_AT063]

source_name: OVCAR-5 Ovarian cancer


title: RNAAtlas056_polyA_RNA [RNA_AT062]

source_name: OVCAR-4 Ovarian cancer


title: RNAAtlas054_total_RNA [RNA_AT060]

source_name: NCI-H522 Ovarian cancer


title: RNAAtlas055_polyA_RNA [RNA_AT061]

source_name: OVCAR-3 Ovarian cancer


title: RNAAtlas056_total_RNA [RNA_AT062]


title: RNAAtlas054_polyA_RNA [RNA_AT060]


title: RNAAtlas057_total_RNA [RNA_AT063]


title: RNAAtlas055_total_RNA [RNA_AT061]


title: RNAAtlas059_total_RNA [RNA_AT065]


title: RNAAtlas058_total_RNA [RNA_AT064]


title: RNAAtlas060_total_RNA [RNA_AT066]


title: RNAAtlas053_total_RNA [RNA_AT059]

source_name: NCI-H460 Non-Small Cell Lung cancer


title: RNAAtlas050_total_RNA [RNA_AT056]

source_name: NCI-H226 Non-Small Cell Lung cancer


title: RNAAtlas051_polyA_RNA [RNA_AT057]

source_name: NCI-H23 Non-Small Cell Lung cancer


title: RNAAtlas052_polyA_RNA [RNA_AT058]

source_name: NCI-H322M Non-Small Cell Lung cancer


title: RNAAtlas053_polyA_RNA [RNA_AT059]


title: RNAAtlas051_total_RNA [RNA_AT057]


title: RNAAtlas052_total_RNA [RNA_AT058]


title: RNAAtlas049_polyA_RNA [RNA_AT055]

source_name: NCI/ADR-RES Non-Small Cell Lung cancer


title: RNAAtlas046_total_RNA [RNA_AT052]

source_name: MDA-MB-435 Melanoma


title: RNAAtlas049_total_RNA [RNA_AT055]


title: RNAAtlas048_total_RNA [RNA_AT054]

source_name: MOLT-4 Leukemia


title: RNAAtlas045_total_RNA [RNA_AT051]

source_name: MDA-MB-231 Breast cancer


title: RNAAtlas044_total_RNA [RNA_AT050]

source_name: MCF-7 Breast cancer


title: RNAAtlas050_polyA_RNA [RNA_AT056]


title: RNAAtlas043_polyA_RNA [RNA_AT049]

source_name: MALME-3M Melanoma


title: RNAAtlas042_polyA_RNA [RNA_AT048]

source_name: M14 Melanoma


title: RNAAtlas042_total_RNA [RNA_AT048]


title: RNAAtlas045_polyA_RNA [RNA_AT051]


title: RNAAtlas046_polyA_RNA [RNA_AT052]


title: RNAAtlas040_total_RNA [RNA_AT046]

source_name: KM12 Colon cancer


title: RNAAtlas044_polyA_RNA [RNA_AT050]


title: RNAAtlas041_total_RNA [RNA_AT047]

source_name: LOX IMVI Melanoma


title: RNAAtlas043_total_RNA [RNA_AT049]


title: RNAAtlas039_total_RNA [RNA_AT045]

source_name: K562 Leukemia


title: RNAAtlas037_total_RNA [RNA_AT043]

source_name: HT29 Colon cancer


title: RNAAtlas092_polyA_RNA [RNA_AT290]

source_name: JY


title: RNAAtlas047_polyA_RNA [RNA_AT053]

source_name: MDA-MB-468 Breast cancer


title: RNAAtlas040_polyA_RNA [RNA_AT046]


title: RNAAtlas038_total_RNA [RNA_AT044]

source_name: IGR-OV1 Ovarian cancer


title: RNAAtlas036_polyA_RNA [RNA_AT042]

source_name: Hs-578T Breast cancer


title: RNAAtlas039_polyA_RNA [RNA_AT045]


title: RNAAtlas047_total_RNA [RNA_AT053]


title: RNAAtlas048_polyA_RNA [RNA_AT054]


title: RNAAtlas034_total_RNA [RNA_AT040]

source_name: HOP-62 Non-Small Cell Lung cancer


title: RNAAtlas036_total_RNA [RNA_AT042]


title: RNAAtlas035_polyA_RNA [RNA_AT041]

source_name: HOP-92 Non-Small Cell Lung cancer


title: RNAAtlas035_total_RNA [RNA_AT041]


title: RNAAtlas033_polyA_RNA [RNA_AT039]

source_name: HL-60 Leukemia


title: RNAAtlas032_total_RNA [RNA_AT038]

source_name: HCT-15 Colon cancer


title: RNAAtlas041_polyA_RNA [RNA_AT047]


title: RNAAtlas034_polyA_RNA [RNA_AT040]


title: RNAAtlas033_total_RNA [RNA_AT039]


title: RNAAtlas031_polyA_RNA [RNA_AT037]

source_name: HCT-116 Colon cancer


title: RNAAtlas031_total_RNA [RNA_AT037]


title: RNAAtlas032_polyA_RNA [RNA_AT038]


title: RNAAtlas028_total_RNA [RNA_AT034]

source_name: DU145 Prostate cancer


title: RNAAtlas030_total_RNA [RNA_AT036]

source_name: HCC-2998 Colon cancer


title: RNAAtlas030_polyA_RNA [RNA_AT036]


title: RNAAtlas027_total_RNA [RNA_AT033]

source_name: COLO-205 Colon cancer


title: RNAAtlas028_polyA_RNA [RNA_AT034]


title: RNAAtlas026_polyA_RNA [RNA_AT032]

source_name: CCRF-CEM Leukemia


title: RNAAtlas026_total_RNA [RNA_AT032]


title: RNAAtlas037_polyA_RNA [RNA_AT043]


title: RNAAtlas027_polyA_RNA [RNA_AT033]


title: RNAAtlas029_total_RNA [RNA_AT035]

source_name: EKVX Non-Small Cell Lung cancer


title: RNAAtlas025_polyA_RNA [RNA_AT031]

source_name: CAKI-1 Renal cancer


title: RNAAtlas021_polyA_RNA [RNA_AT027]

source_name: A498 Renal cancer


title: RNAAtlas024_total_RNA [RNA_AT030]

source_name: BT-549 Breast cancer


title: RNAAtlas023_total_RNA [RNA_AT029]

source_name: ACHN Renal cancer


title: RNAAtlas023_polyA_RNA [RNA_AT029]


title: RNAAtlas021_total_RNA [RNA_AT027]


title: RNAAtlas075_polyA_RNA [RNA_AT081]

source_name: TK-10 Renal cancer


title: RNAAtlas024_polyA_RNA [RNA_AT030]


title: RNAAtlas019_total_RNA [RNA_AT025]

source_name: COG-N-387 Neuroblastoma

value: Sympathetic Nervous System


title: RNAAtlas020_polyA_RNA [RNA_AT026]

source_name: 786-0 Renal cancer


title: RNAAtlas029_polyA_RNA [RNA_AT035]

value: Pulmonary System


title: RNAAtlas022_polyA_RNA [RNA_AT028]

source_name: A549 ATCC Non-Small Cell Lung cancer


title: RNAAtlas018_total_RNA [RNA_AT024]

source_name: SH-SY5Y Neuroblastoma


title: RNAAtlas020_total_RNA [RNA_AT026]


title: RNAAtlas018_polyA_RNA [RNA_AT024]


title: RNAAtlas019_polyA_RNA [RNA_AT025]


title: RNAAtlas015_total_RNA [RNA_AT021]

source_name: IMR-32 Neuroblastoma


title: RNAAtlas015_polyA_RNA [RNA_AT021]


title: RNAAtlas017_total_RNA [RNA_AT023]

source_name: NGP Neuroblastoma


title: RNAAtlas014_polyA_RNA [RNA_AT020]

source_name: N206 Neuroblastoma


title: RNAAtlas022_total_RNA [RNA_AT028]


title: RNAAtlas025_total_RNA [RNA_AT031]


title: RNAAtlas014_total_RNA [RNA_AT020]


title: RNAAtlas017_polyA_RNA [RNA_AT023]


title: RNAAtlas013_polyA_RNA [RNA_AT019]

source_name: SHEP Neuroblastoma


title: RNAAtlas016_polyA_RNA [RNA_AT022]

source_name: SK-N-SH Neuroblastoma


title: RNAAtlas013_total_RNA [RNA_AT019]


title: RNAAtlas012_total_RNA [RNA_AT018]

source_name: SKNBE(2c) Neuroblastoma


title: RNAAtlas011_total_RNA [RNA_AT016]

source_name: CLBGA Neuroblastoma


title: RNAAtlas009_total_RNA [RNA_AT014]

source_name: SK-N-AS Neuroblastoma


title: RNAAtlas010_total_RNA [RNA_AT015]

source_name: NB-1 Neuroblastoma


title: RNAAtlas016_total_RNA [RNA_AT022]


title: RNAAtlas009_polyA_RNA [RNA_AT014]


title: RNAAtlas007_polyA_RNA [RNA_AT007]

source_name: SEM B-ALL


title: RNAAtlas007_total_RNA [RNA_AT007]


title: RNAAtlas008_total_RNA [RNA_AT008]

source_name: SUP-B15 B-ALL


title: RNAAtlas008_polyA_RNA [RNA_AT008]


title: RNAAtlas006_total_RNA [RNA_AT006]

source_name: REH B-ALL


title: RNAAtlas005_total_RNA [RNA_AT005]

source_name: RCH-ACV B-ALL


title: RNAAtlas006_polyA_RNA [RNA_AT006]


title: RNAAtlas004_total_RNA [RNA_AT004]

source_name: NALM-6 B-ALL


title: RNAAtlas012_polyA_RNA [RNA_AT018]


title: RNAAtlas003_polyA_RNA [RNA_AT003]

source_name: NALM-16 B-ALL


title: RNAAtlas003_total_RNA [RNA_AT003]


title: RNAAtlas004_polyA_RNA [RNA_AT004]


title: RNAAtlas002_polyA_RNA [RNA_AT002]

source_name: HAL-01 B-ALL


title: RNAAtlas002_total_RNA [RNA_AT002]


title: RNAAtlas001_total_RNA [RNA_AT001]

source_name: E2A B-ALL


title: RNAAtlas299_sRNA [RNA_AT129]

description:
RNAAtlas_miRNA_counts_filtered.txt
RNAAtlas_miRNA_rpm_filtered.txt

source_name: Brain parietal cortex tissue

value: tissue


title: RNAAtlas300_sRNA [RNA_AT130]

source_name: Fetal Brain tissue


title: RNAAtlas011_polyA_RNA [RNA_AT016]


title: RNAAtlas010_polyA_RNA [RNA_AT015]


title: RNAAtlas297_sRNA [RNA_AT127]

source_name: Brain striatum tissue


title: RNAAtlas295_sRNA [RNA_AT125]

source_name: Brain stem tissue


title: RNAAtlas298_sRNA [RNA_AT128]

source_name: Brain occipital cortex tissue


title: RNAAtlas005_polyA_RNA [RNA_AT005]


title: RNAAtlas294_sRNA [RNA_AT124]

source_name: Brain cerebellum tissue


title: RNAAtlas292_sRNA [RNA_AT122]

source_name: adrenal tissue

value: Endocrine System


title: RNAAtlas289_sRNA [RNA_AT119]

source_name: prostate tissue


title: RNAAtlas288_sRNA [RNA_AT118]

source_name: colon tissue

value: Gastrointestinal System


title: RNAAtlas074_total_RNA [RNA_AT080]

source_name: T-47D Breast cancer


title: RNAAtlas293_sRNA [RNA_AT123]

source_name: stomach tissue


title: RNAAtlas001_polyA_RNA [RNA_AT001]


title: RNAAtlas291_sRNA [RNA_AT121]

source_name: cervix tissue


title: RNAAtlas286_sRNA [RNA_AT116]

source_name: skeletal muscle tissue

value: Skeletal Muscle System


title: RNAAtlas290_sRNA [RNA_AT120]

source_name: bladder tissue

value: Urethral System


title: RNAAtlas287_sRNA [RNA_AT117]

source_name: small intestine tissue


title: RNAAtlas296_sRNA [RNA_AT126]

source_name: Brain frontal cortex tissue


title: RNAAtlas283_sRNA [RNA_AT113]

source_name: testicle tissue


title: RNAAtlas278_sRNA [RNA_AT108]

source_name: brain tissue


title: RNAAtlas279_sRNA [RNA_AT109]

source_name: thymus tissue


title: RNAAtlas277_sRNA [RNA_AT107]

source_name: liver tissue

value: Hepatic System


title: RNAAtlas273_sRNA [RNA_AT103]

source_name: placenta tissue

value: Placenta System


title: RNAAtlas274_sRNA [RNA_AT104]

source_name: breast tissue


title: RNAAtlas281_sRNA [RNA_AT111]

source_name: lung tissue


title: RNAAtlas272_sRNA [RNA_AT102]

source_name: lymph node tissue

value: Lymphatic System


title: RNAAtlas280_sRNA [RNA_AT110]

source_name: heart tissue

value: Cardiac System


title: RNAAtlas269_sRNA [RNA_AT099]

source_name: fallopian tube tissue


title: RNAAtlas282_sRNA [RNA_AT112]

source_name: spleen tissue


title: RNAAtlas271_sRNA [RNA_AT101]

source_name: uterus tissue


title: RNAAtlas275_sRNA [RNA_AT105]

source_name: pancreas tissue


title: RNAAtlas276_sRNA [RNA_AT106]

source_name: adipose tissue

value: Adipose System


title: RNAAtlas265_sRNA [RNA_AT095]

source_name: left atruim tissue


title: RNAAtlas284_sRNA [RNA_AT114]

source_name: ovary tissue


title: RNAAtlas267_sRNA [RNA_AT097]

source_name: right atrium tissue


title: RNAAtlas264_sRNA [RNA_AT094]

source_name: pericardium tissue


title: RNAAtlas266_sRNA [RNA_AT096]

source_name: left ventricle tissue


title: RNAAtlas263_sRNA [RNA_AT093]

source_name: vena cava tissue


title: RNAAtlas285_sRNA [RNA_AT115]

source_name: kidney tissue


title: RNAAtlas268_sRNA [RNA_AT098]

source_name: right ventricle tissue


title: RNAAtlas261_sRNA [RNA_AT091]

source_name: esophagus tissue


title: RNAAtlas259_sRNA [RNA_AT089]

source_name: proximal colon tissue


title: RNAAtlas256_sRNA [RNA_AT086]

source_name: ileum tissue


title: RNAAtlas260_sRNA [RNA_AT090]

source_name: distal colon tissue


title: RNAAtlas270_sRNA [RNA_AT100]

source_name: thyroid tissue


title: RNAAtlas254_sRNA [RNA_AT299]

source_name: Brain Microvascular Endothelial Cell

value: cell type

value: Central Nervous System


title: RNAAtlas262_sRNA [RNA_AT092]

source_name: trachea tissue


title: RNAAtlas251_sRNA [RNA_AT296]

source_name: CD19+ B-cells

value: Hematopoietic System


title: RNAAtlas250_sRNA [RNA_AT295]

source_name: CD56+ NK cells


title: RNAAtlas247_sRNA [RNA_AT292]

source_name: CB CD34+lin-


title: RNAAtlas248_sRNA [RNA_AT293]

source_name: CD3+ T cells


title: RNAAtlas246_sRNA [RNA_AT278]

source_name: Umbilical Artery Smooth Muscle Cell

value: Umbilical Cord System


title: RNAAtlas257_sRNA [RNA_AT087]

source_name: jejunum tissue


title: RNAAtlas258_sRNA [RNA_AT088]

source_name: duodenum tissue


title: RNAAtlas241_sRNA [RNA_AT273]

source_name: Mammary Epithelial Cell

value: Female Reproductive System


title: RNAAtlas240_sRNA [RNA_AT272]

source_name: Mammary Endothelial Cell


title: RNAAtlas244_sRNA [RNA_AT276]

source_name: Umbilical Artery Endothelial Cell


title: RNAAtlas242_sRNA [RNA_AT274]

source_name: Mammary Fibroblast


title: RNAAtlas243_sRNA [RNA_AT275]

source_name: Umbilical Vein Endothelial Cell


title: RNAAtlas249_sRNA [RNA_AT294]

source_name: CD14+ Monocytes


title: RNAAtlas237_sRNA [RNA_AT269]

source_name: Umbilical Mesenchymal Stem Cell

value: Mesenchymal Stem System


title: RNAAtlas239_sRNA [RNA_AT271]

source_name: Vertebral Mesenchymal Stem Cell


title: RNAAtlas236_sRNA [RNA_AT268]

source_name: Mesenchymal Stem Cell-hepatic


title: RNAAtlas235_sRNA [RNA_AT267]

source_name: Mesenchymal Stem Cell-adipose


title: RNAAtlas233_sRNA [RNA_AT265]

source_name: Ovarian Fibroblast


title: RNAAtlas255_sRNA [RNA_AT300]

source_name: Chondrocyte articular

value: Skeletal System


title: RNAAtlas231_sRNA [RNA_AT263]

source_name: Ovarian Microvascular Endothelial Cell


title: RNAAtlas229_sRNA [RNA_AT261]

source_name: Preadipocyte-visceral


title: RNAAtlas234_sRNA [RNA_AT266]

source_name: Mesenchymal Stem Cell-bone marrow


title: RNAAtlas223_sRNA [RNA_AT255]

source_name: Amniotic Epithelial Cell


title: RNAAtlas238_sRNA [RNA_AT270]

source_name: Pulmonary Mesenchymal Stel Cell


title: RNAAtlas232_sRNA [RNA_AT264]

source_name: Ovarian Surface Epithelial Cell


title: RNAAtlas221_sRNA [RNA_AT253]

source_name: Endometrial Micorvascular Endothelial Cell


title: RNAAtlas220_sRNA [RNA_AT252]

source_name: Myometrial Microvascular Endothelial Cell


title: RNAAtlas222_sRNA [RNA_AT254]

source_name: Myometrial Smooth Muscle Cell


title: RNAAtlas227_sRNA [RNA_AT259]

source_name: Chorionic Mesenchymal Stromal Cell


title: RNAAtlas245_sRNA [RNA_AT277]

source_name: Umbilical Vein Smooth Muscle Cell


title: RNAAtlas213_sRNA [RNA_AT245]

source_name: Retinal Pigment Epithelial Cell

value: Ocular System


title: RNAAtlas216_sRNA [RNA_AT248]

source_name: Conjunctival Fibroblast


title: RNAAtlas230_sRNA [RNA_AT262]

source_name: Preadipocyte-subcutaneous


title: RNAAtlas226_sRNA [RNA_AT258]

source_name: Amniotic Mesenchymal Stromal Cell


title: RNAAtlas209_sRNA [RNA_AT241]

source_name: Cardiac Fibroblast fetal atrial


title: RNAAtlas224_sRNA [RNA_AT256]

source_name: Villous Trophoblast


title: RNAAtlas215_sRNA [RNA_AT247]

source_name: Iris Pigment Epithelial Cell


title: RNAAtlas217_sRNA [RNA_AT249]

source_name: Non-Pigment Ciliary Epithelial Cell


title: RNAAtlas210_sRNA [RNA_AT242]

source_name: pericardial fibroblast


title: RNAAtlas228_sRNA [RNA_AT260]

source_name: Adipose Microvascular Endothelial Cell


title: RNAAtlas225_sRNA [RNA_AT257]

source_name: Villous Mesenchymal Fibroblast


title: RNAAtlas218_sRNA [RNA_AT250]

source_name: Trabecular Meshwork Cell


title: RNAAtlas212_sRNA [RNA_AT244]

source_name: Keratocyte


title: RNAAtlas205_sRNA [RNA_AT237]

source_name: Cardiac Fibroblast


title: RNAAtlas211_sRNA [RNA_AT243]

source_name: Corneal Epithelial Cell


title: RNAAtlas207_sRNA [RNA_AT239]

source_name: Cardiac Fibroblast-adult atrial


title: RNAAtlas208_sRNA [RNA_AT240]

source_name: Cardiac Fibroblast adult


title: RNAAtlas219_sRNA [RNA_AT251]

source_name: Ocular Choroid Fibroblast


title: RNAAtlas201_sRNA [RNA_AT233]

source_name: Aortic Smooth Muscle Cell


title: RNAAtlas214_sRNA [RNA_AT246]

source_name: Lens Epithelial Cell


title: RNAAtlas199_sRNA [RNA_AT231]

source_name: Coronary Artery Endothelial cell


title: RNAAtlas206_sRNA [RNA_AT238]

source_name: Cardiac Fibroblast-adult ventrical


title: RNAAtlas198_sRNA [RNA_AT230]

source_name: Cardiac Microvascular Endothelial Cell


title: RNAAtlas204_sRNA [RNA_AT236]

source_name: Cardiac Myocyte-adult


title: RNAAtlas202_sRNA [RNA_AT234]

source_name: Aortic Fibroblast


title: RNAAtlas195_sRNA [RNA_AT227]

source_name: Gallbladder Fibroblast


title: RNAAtlas200_sRNA [RNA_AT232]

source_name: Aortic Endothelial Cell


title: RNAAtlas193_sRNA [RNA_AT225]

source_name: Hepatocyte


title: RNAAtlas194_sRNA [RNA_AT226]

source_name: Hepatic Stellate Cell


title: RNAAtlas196_sRNA [RNA_AT228]

source_name: Splenic Endothelial cell


title: RNAAtlas192_sRNA [RNA_AT224]

source_name: Hepatic Sinusoidal Endothelial Cell


title: RNAAtlas190_sRNA [RNA_AT222]

source_name: Nucleus Pulposus Cell


title: RNAAtlas189_sRNA [RNA_AT221]

source_name: Synoviocyte


title: RNAAtlas187_sRNA [RNA_AT219]

source_name: Calvarial Osteoblast


title: RNAAtlas188_sRNA [RNA_AT220]

source_name: Osteoblast - femural


title: RNAAtlas191_sRNA [RNA_AT223]

source_name: Anulus Pulposus Cell


title: RNAAtlas186_sRNA [RNA_AT218]

source_name: Seminal Vesicle Fibroblast

value: Male Reproductive System


title: RNAAtlas185_sRNA [RNA_AT217]

source_name: Seminal Vesicle Epithelial Cell


title: RNAAtlas183_sRNA [RNA_AT215]

source_name: Prostate Fibroblast


title: RNAAtlas203_sRNA [RNA_AT235]

source_name: Cardiac Myocyte


title: RNAAtlas184_sRNA [RNA_AT216]

source_name: Seminal Vesicle Microvascular Endothelial Cell


title: RNAAtlas180_sRNA [RNA_AT212]

source_name: Urothelial Cell


title: RNAAtlas182_sRNA [RNA_AT214]

source_name: Prostate Epithelial Cell


title: RNAAtlas181_sRNA [RNA_AT213]

source_name: Prostate Microvascular Endothelial Cell


title: RNAAtlas178_sRNA [RNA_AT210]

source_name: Bladder Microvascular Endothelial Cell


title: RNAAtlas179_sRNA [RNA_AT211]

source_name: Bladder Smooth Muscle Cell


title: RNAAtlas197_sRNA [RNA_AT229]

source_name: Splenic Fibroblast


title: RNAAtlas177_sRNA [RNA_AT209]

source_name: Renal Mesangial Cell

value: Renal System


title: RNAAtlas173_sRNA [RNA_AT205]

source_name: Renal Glomerular Endothelial Cell


title: RNAAtlas175_sRNA [RNA_AT207]

source_name: Renal Cortical Epithelial Cell


title: RNAAtlas174_sRNA [RNA_AT206]

source_name: Renal Proximal Tubular Epithelial Cell


title: RNAAtlas171_sRNA [RNA_AT203]

source_name: Pancreatic Stallate Cell

value: Endocrine System


title: RNAAtlas176_sRNA [RNA_AT208]

source_name: Renal Epithelial Cell


title: RNAAtlas170_sRNA [RNA_AT202]

source_name: Thyroid Fibroblasts


title: RNAAtlas172_sRNA [RNA_AT204]

source_name: Thymus Fibroblasts


title: RNAAtlas167_sRNA [RNA_AT199]

source_name: Adrenal Microvascular Endothelial Cell


title: RNAAtlas169_sRNA [RNA_AT201]

source_name: Adrenal Fibroblasts


title: RNAAtlas166_sRNA [RNA_AT198]

source_name: Skeletal Muscle Myoblast

value: Skeletal Muscle System


title: RNAAtlas165_sRNA [RNA_AT197]

source_name: Skeletal Muscle Satellite Cell


title: RNAAtlas164_sRNA [RNA_AT196]

source_name: Skeletal Muscle Cell


title: RNAAtlas161_sRNA [RNA_AT193]

source_name: pulmonary Fibroblast-Adult

value: Pulmonary System


title: RNAAtlas168_sRNA [RNA_AT200]

source_name: Adrenal Cortical Cell


title: RNAAtlas157_sRNA [RNA_AT189]

source_name: Bronchial Epithelial Cell


title: RNAAtlas156_sRNA [RNA_AT188]

source_name: Pulmonary Alveolar Epithelial Cell


title: RNAAtlas155_sRNA [RNA_AT187]

source_name: Pulmonary Artery Fibroblast


title: RNAAtlas158_sRNA [RNA_AT190]

source_name: Tracheal Epithelial Cell


title: RNAAtlas151_sRNA [RNA_AT183]

source_name: Rectal Smooth Muscle Cell

value: Gastrointestinal System


title: RNAAtlas154_sRNA [RNA_AT186]

source_name: Pulmonary Artery Smooth Muscle Cell


title: RNAAtlas159_sRNA [RNA_AT191]

source_name: Small Airway Epithelial Cell


title: RNAAtlas163_sRNA [RNA_AT195]

source_name: Tracheal Smooth Muscle Cell


title: RNAAtlas146_sRNA [RNA_AT178]

source_name: Intestinal Smooth Muscle Cell


title: RNAAtlas145_sRNA [RNA_AT177]

source_name: Gastric Smooth Muscle Cell


title: RNAAtlas149_sRNA [RNA_AT181]

source_name: Colonic Smooth Muscle Cell


title: RNAAtlas148_sRNA [RNA_AT180]

source_name: Colonic Microvascular Endothelial Cell


title: RNAAtlas147_sRNA [RNA_AT179]

source_name: Intestinal Fibroblasts


title: RNAAtlas152_sRNA [RNA_AT184]

source_name: Pulmonary Microvascular Endothelial Cell


title: RNAAtlas142_sRNA [RNA_AT174]

source_name: Esophageal Smooth Muscle Cell


title: RNAAtlas150_sRNA [RNA_AT182]

source_name: Colonic Epithelial Cell total RNA


title: RNAAtlas138_sRNA [RNA_AT170]

source_name: Tonsil Fibroblasts total RNA

value: Tonsil System


title: RNAAtlas162_sRNA [RNA_AT194]

source_name: Bronchial Smooth Muscle Cell


title: RNAAtlas140_sRNA [RNA_AT172]

source_name: Gingival Fibroblast

value: Oral System


title: RNAAtlas160_sRNA [RNA_AT192]

source_name: Pulmonary Fibroblast


title: RNAAtlas141_sRNA [RNA_AT173]

source_name: Periodontal Ligament Fibroblast


title: RNAAtlas143_sRNA [RNA_AT175]

source_name: Esophageal Epithelial Cell


title: RNAAtlas136_sRNA [RNA_AT168]

source_name: Tonsil Endothelial Cell


title: RNAAtlas139_sRNA [RNA_AT171]

source_name: Oral Keratinocyte


title: RNAAtlas134_sRNA [RNA_AT166]

source_name: Lymphatic Endothelial Cell

value: Lymphatic System


title: RNAAtlas131_sRNA [RNA_AT163]

source_name: Hair Follicular Outer Root Sheath Cell

value: cell type

value: Hair System


title: RNAAtlas133_sRNA [RNA_AT165]

source_name: Hair Follicular Keratinocyte


title: RNAAtlas137_sRNA [RNA_AT169]

source_name: Tonsil Epithelial Cell


title: RNAAtlas127_sRNA [RNA_AT159]

source_name: Dermal Fibroblast-adult

value: Dermal System


title: RNAAtlas153_sRNA [RNA_AT185]

source_name: Pulmonary Artery Endothelial Cell


title: RNAAtlas128_sRNA [RNA_AT160]

source_name: Dermal Fibroblast-fetal Mitomycin C treated


title: RNAAtlas144_sRNA [RNA_AT176]

source_name: Esophageal Fibroblasts


title: RNAAtlas132_sRNA [RNA_AT164]

source_name: Hair Follicular Inner Root Sheath Cell


title: RNAAtlas122_sRNA [RNA_AT154]

source_name: Epidermal Melanocyte-medium


title: RNAAtlas121_sRNA [RNA_AT153]

source_name: Epidermal Melanocyte- light


title: RNAAtlas120_sRNA [RNA_AT152]

source_name: Epidermal Keratinocyte-fetal


title: RNAAtlas129_sRNA [RNA_AT161]

source_name: Hair Dermal Papilla Cell


title: RNAAtlas135_sRNA [RNA_AT167]

source_name: Lymphatic Fibroblast


title: RNAAtlas130_sRNA [RNA_AT162]

source_name: Hair Germinal Matrix Cell


title: RNAAtlas124_sRNA [RNA_AT156]

source_name: Epidermal Melanocyte- adult


title: RNAAtlas118_sRNA [RNA_AT150]

source_name: Epidermal Keratinocyte-neonate


title: RNAAtlas126_sRNA [RNA_AT158]

source_name: Dermal Fibroblast-neonate


title: RNAAtlas111_sRNA [RNA_AT143]

source_name: Astrocyte-spinal cord

value: Central Nervous System


title: RNAAtlas123_sRNA [RNA_AT155]

source_name: Epidermal Melanocyte-dark


title: RNAAtlas125_sRNA [RNA_AT157]

source_name: Dermal Fibroblast-fetal


title: RNAAtlas119_sRNA [RNA_AT151]

source_name: Epidermal Keratinocyte-adult


title: RNAAtlas110_sRNA [RNA_AT142]

source_name: Astrocyte-cerebellar


title: RNAAtlas114_sRNA [RNA_AT146]

source_name: Astrocytes-mid brain


title: RNAAtlas107_sRNA [RNA_AT139]

source_name: Schwann Cell


title: RNAAtlas117_sRNA [RNA_AT149]

source_name: Dermal Lymphatic Endothelial Cell


title: RNAAtlas115_sRNA [RNA_AT147]

source_name: Retinal Astrocyte


title: RNAAtlas106_sRNA [RNA_AT138]

source_name: Oligodendrocyte Precursor Cell


title: RNAAtlas112_sRNA [RNA_AT144]

source_name: Astrocyte-hippocampal


title: RNAAtlas113_sRNA [RNA_AT145]

source_name: Astrocytes-brain stem cel


title: RNAAtlas109_sRNA [RNA_AT141]

source_name: Astrocyte


title: RNAAtlas116_sRNA [RNA_AT148]

source_name: Dermal Microvascular Endothelial Cell


title: RNAAtlas104_sRNA [RNA_AT136]

source_name: Meningeal Cell


title: RNAAtlas100_sRNA [RNA_AT132]

source_name: Brain Vascular Adventitial Fibroblasts


title: RNAAtlas102_sRNA [RNA_AT134]

source_name: Choroid Plexus Epithelial Cell


title: RNAAtlas101_sRNA [RNA_AT133]

source_name: Brain Vascular Pericyte


title: RNAAtlas099_sRNA [RNA_AT131]

source_name: Brain Vascular Smooth Muscle Cell


title: RNAAtlas096_sRNA [RNA_AT011]

source_name: Monocytes

value: Hematopoietic System


title: RNAAtlas103_sRNA [RNA_AT135]

source_name: Choroid Plexus Fibroblast


title: RNAAtlas098_sRNA [RNA_AT013]

source_name: Mature monocyte-derived dendritic cells


title: RNAAtlas097_sRNA [RNA_AT012]

source_name: Immature monocyte-derived dendritic cells


title: RNAAtlas095_sRNA [RNA_AT010]

source_name: Alveolar macrophage donor 7


title: RNAAtlas094_sRNA [RNA_AT009]

source_name: Alveolar macrophage donor 4


title: RNAAtlas108_sRNA [RNA_AT140]

source_name: Perineurial Cell


title: RNAAtlas093_sRNA [RNA_AT291]

value: cell line

value: Embryonic stem cells System


title: RNAAtlas089_sRNA [RNA_AT017]


title: RNAAtlas091_sRNA [RNA_AT288]

source_name: YTS


title: RNAAtlas090_sRNA [RNA_AT287]

source_name: NKL


title: RNAAtlas092_sRNA [RNA_AT290]

source_name: JY


title: RNAAtlas087_sRNA [RNA_AT286]

source_name: ALL-SIL T-ALL

value: cancer cell line


title: RNAAtlas086_sRNA [RNA_AT285]

source_name: JURKAT T-ALL


title: RNAAtlas083_sRNA [RNA_AT282]

source_name: MOLT-16 T-ALL


title: RNAAtlas085_sRNA [RNA_AT284]

source_name: TALL-1 T-ALL


title: RNAAtlas084_sRNA [RNA_AT283]

source_name: PEER T-ALL


title: RNAAtlas082_sRNA [RNA_AT281]

source_name: HPB-ALL T-ALL


title: RNAAtlas088_sRNA [RNA_AT289]

source_name: Raji Burkitt's Lymphoma


title: RNAAtlas079_sRNA [RNA_AT085]

source_name: UO-31 Renal cancer


title: RNAAtlas078_sRNA [RNA_AT084]

source_name: UACC-62 Melanoma


title: RNAAtlas077_sRNA [RNA_AT083]

source_name: UACC-257 Melanoma


title: RNAAtlas075_sRNA [RNA_AT081]

source_name: TK-10 Renal cancer


title: RNAAtlas076_sRNA [RNA_AT082]

source_name: U251 CNS cancer


title: RNAAtlas074_sRNA [RNA_AT080]

source_name: T-47D Breast cancer

value: Female Reproductive System


title: RNAAtlas072_sRNA [RNA_AT078]

source_name: SR Leukemia


title: RNAAtlas073_sRNA [RNA_AT079]

source_name: SW-620 Colon cancer


title: RNAAtlas070_sRNA [RNA_AT076]

source_name: SNB-19 CNS cancer


title: RNAAtlas068_sRNA [RNA_AT074]

source_name: SK-OV-3 Ovarian cancer


title: RNAAtlas081_sRNA [RNA_AT280]

source_name: DND-41 T-ALL


title: RNAAtlas069_sRNA [RNA_AT075]

source_name: SN12C Renal cancer

value: Renal System


title: RNAAtlas080_sRNA [RNA_AT279]

source_name: LOUCY T-ALL


title: RNAAtlas066_sRNA [RNA_AT072]

source_name: SK-MEL-28 Melanoma


title: RNAAtlas064_sRNA [RNA_AT070]

source_name: SF-539 CNS cancer


title: RNAAtlas067_sRNA [RNA_AT073]

source_name: SK-MEL-5 Melanoma


title: RNAAtlas065_sRNA [RNA_AT071]

source_name: SK-MEL-2 Melanoma


title: RNAAtlas105_sRNA [RNA_AT137]

source_name: Neuron


title: RNAAtlas063_sRNA [RNA_AT069]

source_name: SF-295 CNS cancer


title: RNAAtlas062_sRNA [RNA_AT068]

source_name: SF-268 CNS cancer


title: RNAAtlas052_sRNA [RNA_AT058]

source_name: NCI-H322M Non-Small Cell Lung cancer


title: RNAAtlas051_sRNA [RNA_AT057]

source_name: NCI-H23 Non-Small Cell Lung cancer


title: RNAAtlas056_sRNA [RNA_AT062]

source_name: OVCAR-4 Ovarian cancer


title: RNAAtlas060_sRNA [RNA_AT066]

source_name: RMPI-8226 Leukemia


title: RNAAtlas049_sRNA [RNA_AT055]

source_name: NCI/ADR-RES Non-Small Cell Lung cancer


title: RNAAtlas071_sRNA [RNA_AT077]

source_name: SNB-75 CNS cancer


title: RNAAtlas057_sRNA [RNA_AT063]

source_name: OVCAR-5 Ovarian cancer


title: RNAAtlas058_sRNA [RNA_AT064]

source_name: OVCAR-8 Ovarian cancer


title: RNAAtlas059_sRNA [RNA_AT065]

source_name: PC-3 Prostate cancer

value: Male Reproductive System


title: RNAAtlas061_sRNA [RNA_AT067]

source_name: RXF-393 Renal cancer


title: RNAAtlas055_sRNA [RNA_AT061]

source_name: OVCAR-3 Ovarian cancer


title: RNAAtlas047_sRNA [RNA_AT053]

source_name: MDA-MB-468 Breast cancer


title: RNAAtlas044_sRNA [RNA_AT050]

source_name: MCF-7 Breast cancer


title: RNAAtlas042_sRNA [RNA_AT048]

source_name: M14 Melanoma


title: RNAAtlas050_sRNA [RNA_AT056]

source_name: NCI-H226 Non-Small Cell Lung cancer


title: RNAAtlas054_sRNA [RNA_AT060]

source_name: NCI-H522 Ovarian cancer


title: RNAAtlas045_sRNA [RNA_AT051]

source_name: MDA-MB-231 Breast cancer


title: RNAAtlas039_sRNA [RNA_AT045]

source_name: K562 Leukemia


title: RNAAtlas043_sRNA [RNA_AT049]

source_name: MALME-3M Melanoma


title: RNAAtlas048_sRNA [RNA_AT054]

source_name: MOLT-4 Leukemia


title: RNAAtlas040_sRNA [RNA_AT046]

source_name: KM12 Colon cancer


title: RNAAtlas041_sRNA [RNA_AT047]

source_name: LOX IMVI Melanoma


title: RNAAtlas038_sRNA [RNA_AT044]

source_name: IGR-OV1 Ovarian cancer


title: RNAAtlas053_sRNA [RNA_AT059]

source_name: NCI-H460 Non-Small Cell Lung cancer


title: RNAAtlas033_sRNA [RNA_AT039]

source_name: HL-60 Leukemia


title: RNAAtlas029_sRNA [RNA_AT035]

source_name: EKVX Non-Small Cell Lung cancer


title: RNAAtlas046_sRNA [RNA_AT052]

source_name: MDA-MB-435 Melanoma


title: RNAAtlas037_sRNA [RNA_AT043]

source_name: HT29 Colon cancer


title: RNAAtlas035_sRNA [RNA_AT041]

source_name: HOP-92 Non-Small Cell Lung cancer


title: RNAAtlas027_sRNA [RNA_AT033]

source_name: COLO-205 Colon cancer


title: RNAAtlas036_sRNA [RNA_AT042]

source_name: Hs-578T Breast cancer


title: RNAAtlas030_sRNA [RNA_AT036]

source_name: HCC-2998 Colon cancer


title: RNAAtlas028_sRNA [RNA_AT034]

source_name: DU145 Prostate cancer


title: RNAAtlas026_sRNA [RNA_AT032]

source_name: CCRF-CEM Leukemia


title: RNAAtlas021_sRNA [RNA_AT027]

source_name: A498 Renal cancer


title: RNAAtlas024_sRNA [RNA_AT030]

source_name: BT-549 Breast cancer


title: RNAAtlas025_sRNA [RNA_AT031]

source_name: CAKI-1 Renal cancer


title: RNAAtlas020_sRNA [RNA_AT026]

source_name: 786-0 Renal cancer


title: RNAAtlas023_sRNA [RNA_AT029]

source_name: ACHN Renal cancer


title: RNAAtlas032_sRNA [RNA_AT038]

source_name: HCT-15 Colon cancer


title: RNAAtlas019_sRNA [RNA_AT025]

source_name: COG-N-387 Neuroblastoma

value: Sympathetic Nervous System


title: RNAAtlas015_sRNA [RNA_AT021]

source_name: IMR-32 Neuroblastoma


title: RNAAtlas017_sRNA [RNA_AT023]

source_name: NGP Neuroblastoma


title: RNAAtlas018_sRNA [RNA_AT024]

source_name: SH-SY5Y Neuroblastoma


title: RNAAtlas016_sRNA [RNA_AT022]

source_name: SK-N-SH Neuroblastoma


title: RNAAtlas031_sRNA [RNA_AT037]

source_name: HCT-116 Colon cancer


title: RNAAtlas014_sRNA [RNA_AT020]

source_name: N206 Neuroblastoma


title: RNAAtlas013_sRNA [RNA_AT019]

source_name: SHEP Neuroblastoma


title: RNAAtlas011_sRNA [RNA_AT016]

source_name: CLBGA Neuroblastoma


title: RNAAtlas022_sRNA [RNA_AT028]

source_name: A549 ATCC Non-Small Cell Lung cancer

value: Pulmonary System


title: RNAAtlas012_sRNA [RNA_AT018]

source_name: SKNBE(2c) Neuroblastoma


title: RNAAtlas010_sRNA [RNA_AT015]

source_name: NB-1 Neuroblastoma


title: RNAAtlas009_sRNA [RNA_AT014]

source_name: SK-N-AS Neuroblastoma


title: RNAAtlas005_sRNA [RNA_AT005]

source_name: RCH-ACV B-ALL


title: RNAAtlas007_sRNA [RNA_AT007]

source_name: SEM B-ALL


title: RNAAtlas004_sRNA [RNA_AT004]

source_name: NALM-6 B-ALL


title: RNAAtlas002_sRNA [RNA_AT002]

source_name: HAL-01 B-ALL


title: rnaseq_2017_YPDa_tye7gal4a

status: Public on Mar 31 2021

city: San Francisco

first: Sheena

middle: D.

last: Singh-Babak

state: CA

address: 600 16th Street

department: Microbiology & Immunology

institute: University of California San Francisco

description:
C. albicans / C. dubliniensis hybrid
Tetraploid gal4∆∆∆∆ tye7∆∆∆∆ leu2∆∆/++ his1∆∆/++ MTLa/alpha
DataS1.xlsx, DataS2.xlsx, DataS3.xlsx

data_processing:
Alignment using SOAP2 with custom flags.
Multimapped reads removed from analysis.
Read counts normalized using scaling factor derived from ratio of fragment counts-per-million of parental genomic DNA reads aligned to the same set of orthologous ORFs.
ASE quantified using binomial test, setting expectation to the total fraction of C. albicans:C. dubliniensis aligned reads & corrected for multiple tests.
Genome_build: Candida Genome Database C. albicans assembly 21-s02-m05-r02 and C. dubliniensis assembly CD36.
Supplementary_files_format_and_content: Excel - tables with raw read counts, normalized read counts, calculated significance for each gene.
Supplementary_files_format_and_content: DataS1.xlsx: Mapped read counts for allele-specific expression experiments.
Supplementary_files_format_and_content: DataS2.xlsx: Rank-sum test analysis for all GO categories tested for ASE experiments.
Supplementary_files_format_and_content: DataS3.xlsx: Sign test analysis for all GO categories tested for ASE experiments.
Supplementary_files_format_and_content: DataS4.xlsx: Mapped read counts for overexpression experiments.

organism: Candida albicans x Candida dubliniensis

source_name: Liquid culture extraction

growth_protocol: Grown in liquid culture with the specified media type overnight, backdiluted, then grown to mid log.

extract_protocol:
Ambion RiboPure RA Purification Kit for Yeast.
Illumina TruSeq v.2.

tag: strain

value: Tetraploid gal4<delta><delta><delta><delta> tye7<delta><delta><delta><delta> leu2<delta><delta>/++ his1<delta><delta>/++ MTLa/alpha

tag: growth media

value: YPD

tag: growth phase

value: mid-log


title: RNAAtlas003_sRNA [RNA_AT003]

source_name: NALM-16 B-ALL


title: RNAAtlas006_sRNA [RNA_AT006]

source_name: REH B-ALL


title: OE-3

status: Public on Mar 10 2021

city: Changsha

first: Xiangcheng

last: Xiao

state: Hunan

address: No. 87, Xiangya Road, Kaifu District

department: Department of Nephrology

institute: Xiangya Hospital, Central  South University

data_processing:
Illumina Casava1.7 software used for basecalling.
To obtain “clean reads”, cutadaptor was adopted to remove the adapter sequences of raw reads and filter the low-quality sequences. The sequence was aligned to the human reference genome GRCh38 using Hisat2 software.
R package Rsubread was adopted to quantify expression at the level of genes and then obtain gene expression matrix.
Genome_build: GRCh38
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

source_name: the overexpressed (OE) group

extract_protocol:
Illumina TruSeq RNA Sample Prep Kit (Cat#FC-122-1001) was used with 1 ug of total RNA for the construction of sequencing libraries.
RNA libraries were prepared for sequencing using standard Illumina protocols

value: Human renal proximal tubular epithelial cells

tag: tissue

value: kidney

value: male


title: KD-1

source_name: the knockdown (KD) group

value: lnc453774.1 knockdown


title: OE-2


title: KD-2


title: CON-2

source_name: the control group

value: Control


title: OE-1


title: RNAAtlas008_sRNA [RNA_AT008]

source_name: SUP-B15 B-ALL

tag: sample id

value: Hematopoietic System


title: CON-3


title: BA00097: S16-3384/S16-8771

status: Public on Mar 01 2021

city: San Diego

first: Joan

middle: W

last: Chen

address: 4949 Carroll Canyon Road, Suit 120

institute: Certis Oncology Solution

data_processing:
Illumina Casava1.7 software used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to mm8 whole genome using bowtie v0.12.2 with parameters -q -p 4 -e 100 -y -a -m 10 --best --strata
Reads Per Kilobase of exon per Megabase of library size (RPKM) were calculated using a protocol from Chepelev et al., Nucleic Acids Research, 2009. In short, exons from all isoforms of a gene were merged to create one meta-transcript. The number of reads falling in the exons of this meta-transcript were counted and normalized by the size of the meta-transcript and by the size of the library.
Raw fastq files from sequencing runs were processed as follows: Atropos was used to remove the adapter sequences from all the reads; STAR aligner was used to map the reads to the human hg38 genome; RSEM was used to quantitate the reads for each individual gene. Finally, the TPM values were used to represent the mRNA expression of each individual genes.
Genome_build: hg38
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each Sample ...
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

source_name: breast cancer patients from UConn Health

extract_protocol:
Total RNA was extracted from FFPE samples and quantified using Qubit4 system.
RNA-seq library preparation was performed according to the AmpliSeq for Illumina Transcriptome Human Gene Expression Panel workflow. Library quality control analysis was performed on the Agilent TapeStation System.  Sample libraries passing TapeStation QC were quantified using the Qubit 4 and then normalized, pooled, and loaded into the Illumina NextSeq 500/550 High output 300 cycle v2.5 kit for sequencing of 2x150 paired-end RNA-Seq.

treatment_protocol: neo-adjuvant therapy: neoadjuvant taxane-based chemotherapy

tag: response to nac

value: RD

tag: estrogen receptor status

value: P

tag: progesterone receptor status

value: N

tag: her2 receptor status

tag: tumor grage

tag: breast cancer stage

value: breast cancer


title: Sample-8-ST051-IL17

city: Montréal

first: Jean-Philippe

last: Goulet

state: Québec

address: C.P. 6128, succursale Centre-ville

country: Canada

institute: Université de Montréal

data_processing:
Raw Count Matrix was obtained from the standard workflow used at The McGill University and Génome Québec Innovation Centre
Features with at least one count per million (CPM) were kept prior to transformation.
Raw Counts were transformed into log2-CPM values using the voom method from the limma Bioconductor R package.
Genome_build: GRCh37
Supplementary_files_format_and_content: Matrix table with features as rows. First column is the feature ID and each subsequent column represent one sample.

source_name: IEC

extract_protocol:
RNA extracted with RNeasy Mini kit plus (QIAGEN).
cDNA libraries and RNA-seq were performed by The McGill University and Génome Québec Innovation Centre, Montreal, QC. 100 bp paired-end sequencing was performed on an Illumina-NovaSeq(depth was above 150 million reads).
RNA-Seq (rRNA-depleted stranded (HMR))

tag: cell type

value: Intestinal Epithelial Cells (IEC)

tag: stimulation

tag: randomization code

tag: barcode


title: CON-1

tag: gender

tag: genotype

tag: cell line


title: H9 [methyl-seq]

status: Public on Feb 22 2021

city: Seoul

first: Kinarm

last: Ko

address: 120, Neungdong-ro, Gwangjin-gu

country: South Korea

institute: Konkuk University

data_processing:
bismark_v0.16.3
bowtie2-2.1.0
samtools-1.3
Genome_build: hg19

source_name: Embryonic stem cells

growth_protocol: Pluripotent stem cells were cultured on matrigel coated plated using mTeSR

extract_protocol:
DNA extraction was performed using standard protocols
SureSelectXT   Methyl-Seq Target   Enrichment System for   Illumina Multiplexed   Sequencing
Agilent SureSelect XT Methyl-Seq

value: Human embryonic stem cells


title: H1_mid-secretory phase

status: Public on Feb 24 2021

city: Daejeon

first: Seong-Lan

last: Yu

address: Gasuwon-dong

department: Myunggok Medical Research Institute

institute: Konyang university

description: mid-secretory phase of the endometrium

data_processing:
Raw data were normalized using the relative log expression method in DESeq2
Relative gene abundance was measured in FPKM using StringTie.

source_name: endometrium

extract_protocol:
Total RNA was isolated from endometrial tissue immediately after biopsy using TRIzol reagent according to the manufacturer’s instructions.
Ten nanograms of RNA isolated from each sample was used to construct miRNA sequencing libraries using a SMARTer small noncoding RNA (smRNA)-Seq Kit according to the manufacturer's instructions.

value: endometrium


title: Neutrophils from healthy donor 1 (HD1_8hr) incubated for 8 hours with (plus) Alpha-Amanitin

status: Public on Feb 19 2021

city: Atlanta

first: Diego

last: Moncada

state: Georgia

address: 201 Dowman Dr

department: Pediatrics

institute: Emory University

data_processing:
Hisat2 was used to align next-generation sequencing reads to the reference genome.
SAMtools was used to sort BAM files.
FeatureCounts from the Subread package was used to generate read counts expressed per gene.
Genome_build: GRCh38
Supplementary_files_format_and_content: *_counts.txt: Tab-delimited text files include raw gene counts for every gene.
Supplementary_files_format_and_content: Transcriptional_Blockage_CFASN_Neutrophils.csv: Comma-separated matrix table with raw gene counts for every gene and every sample.

source_name: Blood

growth_protocol: We used Alvetex (Reprocell) 200 μm-thick inert 3D scaffolds with >90% porosity (pore sizes of 36–40 μm, with interconnects of 12–14 μm). In brief, inserts were activated with 70% ethanol, coated overnight at 37ºC with rat-tail collagen I (3 mg/mL, Sigma) and seeded with H441 cells at 2.5×10^5 cells per 12-well insert. Cells were first grown in submerged cultures with DMEM/F12 supplemented with 10% heat-inactivated serum, penicillin, and streptomycin. After 2 days, cells were supplemented basally with serum-free DMEM/F12 with 10% Ultroser G (Pall Life Sciences) to establish ALI. Cultures were grown for 2 weeks at ALI and supplemented basally with fresh medium every 48 hours. For TM experiments, the ALI cultures were placed with the apical compartment exposed to RPMI, leukotriene B4 (LTB4, 100 nM) or airway supernatant (ASN) from CF patients Sputum. Then, 0.5–1 ×10^6 blood neutrophils were loaded onto the 200 μm-thick basal compartment of the Alvetex scaffold (situated upside), and allowed to migrate at 37°C at 5% CO2 through the collagen and epithelial layers into the apical compartment (situated downside, and bathed with either control medium with chemoattractant, or ASN) doi: 10.1002/JLB.5HI1117-454RR. Finally, Using the in vitro model, airway neutrophils (transmigrated neutrophils)were collected after 1, 2, 4 and 6 hour of transmigration towards CFASN.

extract_protocol:
RNA was isolated from purified blood (>98% purity) and transmigrated (LTB4 or CFASN, >98% purity) neutrophils using the Nucleospin RNA isolation kit (Clontech, Takara Bio) following manufacturer protocol. RNA quality and concentration were quantified using a Bioanalyzer (Agilent technologies, Inc.) and only samples with RIN>8.0 were used for sequencing.
Libraries were prepared using the TruSeq RNA Single Indexes Set B kit (Illumina) and AmPure beads (Beckman) and sequenced as paired end (100bp) by high seq rapid run (Illumina) with an aim of ~20 million reads per sample.

treatment_protocol: In this model, naïve blood neutrophils are migrated through a small airway epithelium grown at air-liquid interface toward CF airway fluid supernatant (CFASN, which corresponds to sputum sequentially centrifuged to remove cells and bacteria) or leukotriene B4 (LTB4, transmigration control), placed apically. Specifically, we transmigrated neutrophils in the model for 2 hours into CFASN and then treated them with the RNA polymerase II and III-specific transcriptional blocker Alpha-amanitin.

tag: diagnosis

value: Healthy

value: Neutrophils

tag: treatment

value: CFASN / plus alpha-amanitin

tag: condition

value: 8 hours incubation plus alpha amanitin

tag: donor


title: esg[ts] gut, biological rep2

status: Public on Mar 29 2021

city: Edmonton

first: Edan

last: Foley

state: Alberta

address: 116 st and 85 ave

department: Medical Microbiology and Immunology

institute: University of Alberta

data_processing:
Basecalls performed using Cyberduck (FTP).
FASTQC was used to evaluate the quality of raw paired-end sequencing reads. Adaptors and reads of less than 36 base pairs in length were trimmed from the raw reads using Trimmomatic. Reads were aligned to the Drosophila transcriptome- bdgp6 with HISAT2 (version 2.1.0). The resulting BAM files were converted to SAM flies using Samtools (version 1.8).
The converted files were counted using Rsubread (version 1.24.2) and loaded into EdgeR. In EdgeR, genes with counts less than 1 count per million were filtered and libraries were normalized for size. Normalized libraries were used to call genes that were differentially expressed among treatments.
Genome_build: Drosophila transcriptome - bdgp6
Supplementary_files_format_and_content: eD_counts.txt
Supplementary_files_format_and_content: sorted_cells_e_vs_eD_edgeR.txt
Supplementary_files_format_and_content: Drosophila_melanogaster.BDGP6.95.gtf

organism: Drosophila melanogaster

source_name: Drosophila esg[ts] guts 10 days post activation

growth_protocol: Flies were raised on regular food (standard cornmeal food) at 18C before eclosion. Adult flies were transferred to 29C for 10 days to get ImdD30A expression in gut progenitor cells or enterocytes.

extract_protocol:
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Library construction and sequencing were performed by Lunenfeld-Tanenbaum Research Institute.

treatment_protocol: After the 10 day heat shift, a total of 10 guts per sample (virgin female) were dissected. Guts were dissociated with elastase at 27°C with periodic pipetting for 1hour. GFP-positive progenitor cells were collected by FACS.

value: sorted GFP positive progenitor cells by FACS from dissected midgut

value: w; esgGal4, tubGAL80[ts], UASGFP/+;+/+

tag: Sex

value: Female

tag: age

value: Adult


title: ESC_B15_H3K4me3_rep1

status: Public on Jan 21 2021

city: Yiwu

first: keren

last: cheng

state: Zhejiang

address: 1575 chouzhou bei road

department: School of Medicine

institute: Zhejiang University

data_processing:
Illumina Casava1.8.2 software used for basecalling.
Baboon ChIP-seq reads files were mapping to UCSC papAnu4 by Rsubread with default parameters.
After mapping to the reference genome, bam files of repicates were merged by samtools-1.10. Duplicated reads were marked by Picard-2.239, then removed from the downstream analysis by samtools. Uniquely mapped reads were sorted by samtools-1.10.
MACS2 was used for  reads filteration, fragments length prediction and peak calling.
Deeptools bamcoverage was used for  making bigwig files and heatmap analysis.
Genome_build: papAnu4
Supplementary_files_format_and_content: peak filles generated by MACS2
Supplementary_files_format_and_content: bigwig files, generated by Deeptools

organism: Papio anubis

source_name: ES line B15

growth_protocol: Baboon (Papio anubis) ES (B4, B15) and iPS (160-2, M14939#3) cells used in this study were previously derived (Navara et al., 2013) and grown on feeder cells at 37°C/5% CO2 in PluriSTEM™ Human ES/iPS Medium as described (Navara et al., 2018).

extract_protocol: ChIP-Seq libraries were prepared with antibodies for H3K4me3 (abcam8580), H3K9me3 (abcam8898), H3K27me3 (abcam6002), and H3K27ac (39133, Active Motif, Carlsbad, CA). Each library was prepared from 50,000 cells with inclusion of PEG in samples during MNase digestion, adapter ligation with NEB adapters (E7535S, New England Biolabs, Ipswich, MA) and adapter cleavage by incubation with USER enzyme (M5505S, New England Biolabs) at 37°C for 15 min.

value: Embryonic Stem Cells

tag: antibody

value: ES line B15


title: ESC_B15_H3K27me3_rep2


title: RNAAtlas001_sRNA [RNA_AT001]

source_name: E2A B-ALL

tag: sample id

tag: sample id [deprecated]

tag: sample type

value: cancer cell line

tag: organ system

value: Hematopoietic System


title: ESC_B15_H3K9me3_rep1

tag: cell type


title: donor_18_Ftot

status: Public on Jan 13 2021

city: Padova

first: Mattia

last: Forcato

address: Via Ugo Bassi, 58/B

country: Italy

institute: University of Padova

data_processing:
Quality control of all samples was performed using the FastQC software v0.11.5.
Samples were aligned to the UCSC hg38 version of the human using STAR-2.5.3a aligner,  and a count table was directly obtained with STAR. Counts for UCSC annotated genes were calculated from the aligned reads using featureCounts function of the Rsubread R package.
Normalization was performed using edgeR algorithm. Raw counts were normalized to obtain Counts Per Million mapped reads (CPM) and Reads Per Kilobase per Million mapped reads (RPKM). Only genes with a CPM greater than 1 in at least 1 sample were retained for downstream analyses.
The heterogeneity of the data was evaluated with a Principal Component Analysis (PCA)-plot of the log-transformed normalized CPM, evaluating whether they clustered with similar samples in the same dataset. Sample number 36 was excluded from downstream analyses due to possible experimental contaminations
Genome_build: hg38
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

source_name: Human Amniotic Fluid Stem cells

growth_protocol: hAFSCs were grown in culture medium (αMEM) supplemented with 20% foetal bovine serum (FBS), 2 mM L-glutamine, 100 U/mL penicillin and 100 μg/mL streptomycin (all from EuroClone Spa, Milano, Italy).

extract_protocol:
100 ng of total RNA were used to isolate mRNA using NEXTflex™ Poly(A) Beads (Bioo Scientific, Burleson Rd, Austin, TX, USA), as reported in the producer protocol.
The obtained mRNA was used to prepare the RNA library using NEXTflex™ Rapid Directional qRNA-Seq™ Kit (Bioo Scientific, Burleson Rd, Austin, TX, USA), following the instructions. This kit contains a set of 96 distinct molecular labels on the sequencing adapters. Each label consists of an 8 nucleotide barcode tag. During the ligation reaction, each cDNA fragment end independently and randomly ligates to a single label from this pool of 96 adapters to result in a total of 96 x 96 = 9,216 possible combinations across both ends. For every clone sequenced, paired-end reads reveal the chosen label on each end along with adjoining cDNA sequence.

treatment_protocol: hAFSCs sub-populations were sorted using a label-free, flow-assisted fractionation protocol through Celector® technology (Stem Sel Ltd., Bologna, Italy).

tag: fraction

value: Ftot


title: KD-3

value: Human renal proximal tubular epithelial cells

tag: tissue

value: kidney

value: male

value: lnc453774.1 knockdown


title: MUSCLE_AGE81_M_GROUP80_PLUS_CC_T805_Gt108_R1

status: Public on Jan 08 2021

city: Baltimore

first: Supriyo

last: De

state: Maryland

address: 251 Bayview Blvd

department: Laboratory of Genetics and Genomics

institute: NIA-IRP, NIH

data_processing:
Single-read sequencing was performed for 141 cycles and Real-Time Analysis (RTA) v1.18.66.3 generated the base-call files (BCL files). BCL files were de-multiplexed and converted to standard FASTQ files using bcl2fastq program (v2.17.1.14)
The quality of the bases was checked using FASTQC program (v11.8) before and after adapter removal and last base trimming by cutadapt program (v2.7).
The cleaned FASTQ files were aligned using STAR (v2.4.0j) using hg19 genome and Ensembl v82 annotations
The aligned files were quantifiedd  using featurecounts (v1.4.6-p5) for gene (ENSG) counts and for tracks (.bw files) using  genomeCoverageBed (v2.9.1)
The cleaned FASTQ files were used for calculating TPM values using Kallisto (v0.44) using hg19 genome and Ensembl v82 annotations
Genome_build: human hg19 genome
Supplementary_files_format_and_content: .bw

source_name: Skeletal Muscle

extract_protocol:
Total RNA was prepared by lysing cell pellet (2x106) in 700ul Qiazol and extracted using Qiagen miRNeasy mini kit according to the manufacturer’s recommendation (Qiagen Inc, CA, USA)
Samples were prepared using Nugen Ovation v2 kits and the sequencing library was prepared using Illumina ChIP-Seq kits according to manufacturer’s protocol (Illumina, San Diego, CA).

value: Vastus lateralis

tag: gender

value: M


title: MUSCLE_AGE81_M_GROUP80_PLUS_CC_T790_Gt110_R1


title: MUSCLE_AGE76_M_GROUP65_79_CC_T745_Gt098_R1


title: MUSCLE_AGE70_M_GROUP65_79_AS_T625_Gt089_R1

value: F


title: MUSCLE_AGE72_M_GROUP65_79_CC_T730_Gt084_R1


title: MUSCLE_AGE72_M_GROUP65_79_CC_T760_Gt109_R1


title: MUSCLE_AGE72_F_GROUP65_79_CC_T580_Gt071_R1


title: MUSCLE_AGE70_M_GROUP65_79_CC_T595_Gt061_R1


title: MUSCLE_AGE63_M_GROUP50_64_CC_T685_Gt092_R1


title: MUSCLE_AGE63_F_GROUP50_64_CC_T676_Gt101_R1


title: MUSCLE_AGE62_F_GROUP50_64_CC_T550_Gt070_R1


title: MUSCLE_AGE52_M_GROUP50_64_AA_T505_Gt056_R1


title: MUSCLE_AGE47_F_GROUP35_49_CC_T490_Gt078_R1


title: Sample-1-ALET-UNT-4ST-Medium

value: Intestinal Epithelial Cells (IEC)

tag: stimulation

value: Medium

tag: randomization code

tag: barcode


title: MUSCLE_AGE47_M_GROUP35_49_AA_T475_Gt060_R1


title: MUSCLE_AGE52_F_GROUP50_64_AA_T535_Gt063_R1


title: MUSCLE_AGE33_M_GROUP20_34_CC_T340_Gt042_R1


title: MUSCLE_AGE42_F_GROUP35_49_CC_T445_Gt059_R1


title: MUSCLE_AGE37_M_GROUP35_49_AA_T460_Gt064_R1


title: MUSCLE_AGE35_M_GROUP35_49_CC_T670_Gt104_R1


title: MUSCLE_AGE69_F_GROUP65_79_CC_T715_Gt095_R1


title: MUSCLE_AGE38_M_GROUP35_49_CC_T743_Gt093_R1


title: MUSCLE_AGE31_F_GROUP20_34_AS_T640_Gt090_R1


title: MUSCLE_AGE27_F_GROUP20_34_CC_T385_Gt055_R1


title: MUSCLE_AGE26_F_GROUP20_34_CC_T370_Gt051_R1


title: MUSCLE_AGE26_F_GROUP20_34_CC_T400_Gt045_R1


title: MUSCLE_AGE67_F_GROUP65_79_CC_T610_Gt080_R1


title: MUSCLE_AGE54_M_GROUP50_64_AA_T520_Gt057_R1


title: MUSCLE_AGE25_M_GROUP20_34_AS_T355_Gt046_R1


title: MUSCLE_AGE83_M_GROUP80_PLUS_CC_T294_Gt026_R1


title: MUSCLE_AGE80_F_GROUP80_PLUS_CC_T290_Gt032_R1


title: MUSCLE_AGE67_M_GROUP65_79_CC_T228_Gt002_R1


title: MUSCLE_AGE81_M_GROUP80_PLUS_CC_T291_Gt029_R1


title: MUSCLE_AGE67_M_GROUP65_79_AA_T295_Gt039_R1


title: MUSCLE_AGE60_M_GROUP50_64_CC_T300_Gt013_R1


title: MUSCLE_AGE58_F_GROUP50_64_CC_T330_Gt011_R1


title: MUSCLE_AGE25_F_GROUP20_34_CC_T430_Gt085_R1


title: MUSCLE_AGE57_M_GROUP50_64_CC_T266_Gt004_R1


title: MUSCLE_AGE22_M_GROUP20_34_CC_T415_Gt073_R1