title: Pax7 lineage - E12.5b1_15

description:
ss2_filtered_count.csv
E12.5_b1_1

tag: time point


title: S11-2

status: Public on Apr 12 2022

type: SRA

city: Beijing

first: Yan

last: Zhang

state: Not Applicable

address: Dongdajie street

country: China

institute: Beijing institute of Biotechnology

library_source: transcriptomic

data_processing:
STAR 2.26 --genomeDir hg38.p13  --readFilesCommand zcat --outReadsUnmapped Fastx  --chimSegmentMin 15 --chimScoreMin 10 --clip3pAdapterMMp 0.1 --scoreGapNoncan -4 --scoreGapATAC -4  --chimJunctionOverhangMin 15
hisat2 -p 24 --dta -x hg38.p13 -1 Unmapped.out.mate1 -2 Unmapped.out.mate2  -S hg38_compent.sam
samtools sort -@ 16 -o hg38_STAR.bam Aligned.out.sam
samtools sort -@ 16 -o hg38_hisat2.bam hg38_compent.sam
samtools merge -@ 16  -h hg38_STAR.bam merged.bam hg38_STAR.bam hg38_hisat2.bam
stringtie -e -B -p 8 -G /STAR_genomeDIR/gencode.v33.chr_patch_hapl_scaff.annotation.gtf -o /BallgownDIR}/sample.GTF  {BAMDIR}/merged.bam
Genome_build: hg38.p13
Supplementary_files_format_and_content: stringtie used to evaluate gene and transcript expression for each sample.

molecule: total RNA

organism: Homo sapiens

source_name: whole blood total RNA

extract_protocol:
Blood samples were treated in Trizol reagent (ThermoFisher, USA), and RNA extraction was prepared following manufacturer’s manual; rRNA depleted total RNA. After RNA quantification using Nanodrop (ThermoFisher, USA) and Qubit 2.0 (ThermoFisher, USA).
RNA-seq libraries were prepared with 50ng input RNA material using SMARTer Stranded Total RNA-seq Kit v2—Pico Input Mammalian (Takara Bio USA Inc., USA), according to the manufacturer’s instructions.

tag: individual

tag: Stage

value: ERS

tag: time

value: 11 days after diagnosis

tag: tissue

value: whole blood


title: Pax7 lineage - E12.5b1_14

city: Hong Kong

first: Angela

last: Wu

address: Clear Water Bay, Kowloon

department: Division of Life Science

country: Hong Kong

institute: Hong Kong University of Science and Technology

description:
ss2_filtered_count.csv
E12.5_b1_1

data_processing:
Smart-seq2 samples basecalling were performed using bcl2fastq2; 10x samples were performed using bcl2fastq.
Smart-seq2 samples were quantified using kallisto 0.44.0, summarized using tximport in R; 10x samples were aligned using STAR and matrices were generated with cellranger count
Both datasets were loaded in R environment as Seurat object and filtered for poor quality reads.
Genome_build: mm10
Supplementary_files_format_and_content: csv containing raw counts

organism: Mus musculus

source_name: Mouse embryonic cells

extract_protocol:
YFP+ signals reporting Pax7-lineage cells were FACS sorted. Additional sorting with antibody labeling were done for bulk samples regarding surface marker studies.
Sequencing libraries for single-cell samples were constructed using Smart-seq2 protocol or 10x protocol. Smart-seq2 was also applied to bulk samples.

treatment_protocol: The progeny Pax7-expressing cells during early developmental stage were traced by injecting a single dose of TMX (75 µg/g body weight) intraperitoneally into the pregnant mice at E9.5 to initiate Cre-Lox recombination in Pax7-expressing cells. Embryos were harvested later at E12.5, E14.5, and E16.5.

value: embryonic cells

tag: method

tag: sequencng type

value: Single-cell

tag: plate batch

value: Plate 1

tag: sequence batch

value: Batch 1

tag: medium

tag: marker


title: S11-1


title: RNA from PC3 control (C) cells.2

type: RNA

city: Salamanca

first: Sandra

last: Blanco

address: Campus Miguel de Unamuno

country: Spain

institute: Cancer Research Institute (CIC) - Instituto de Biología Molecular y Celular  del Cáncer (IBMCC-CSIC)

hyb_protocol: Labelling and hybridizations were performed according to protocols from Affymetrix. Briefly, 100 ng of total RNA were amplified and labelled using the WT Plus reagent kit (Affymetrix) and then hybridized to Clariom S human Array (Affymetrix).

scan_protocol: Washing and scanning were performed using GeneChip System of Affymetrix (GeneChip Hybridization Oven 645, GeneChip Fluidics Station 450 and GeneChip Scanner 7G).

data_processing: R/Bioconductor. The data normalization was done using the RMA algorith implemented in the oligo package. For the downstream statistical anlysis the limma package was used. The pvalues were corrected using the Benjamini–Hochberg method.

label: Biotin

source_name: Prostate cancer cell line PC3

growth_protocol: PC3 were cultured in DMEM with L-Glutamine and pyruvate (Gibco) supplemented with 10% FBS (Gibco) and 1% Penicillin/streptomycin, a humidified atmosphere at 37°C and 5% CO2. Cell cultures were tested for mycoplasma monthly and maintained mycoplasma-free.

extract_protocol: Total RNA was extracted from purified cell populations using NZY Total RNA Isolation kit (RNA Purification – NZYTech) according to the manufacturer’s instructions. The RNA integrity was assessed using Agilent 2100 Bioanalyzer (Agilent, Palo Alto, CA).

tag: genotype

value: Control

tag: cell line


title: RNA from PC3 control (C) cells.1

label_protocol: Labelling and hybridizations were performed according to protocols from Affymetrix. Briefly, 100 ng of total RNA were amplified and labelled using the WT Plus reagent kit (Affymetrix) and then hybridized to Clariom S human Array (Affymetrix).


title: RNA from PC3 METTL1 KO cells (clon 117 C1) 2

value: METTL1 KO


title: RNA from PC3 METTL1 KO cells (clon 117 C1) 1


title: od2ex2wk8o

city: Tucson

first: Katherine

last: Rhodes

state: AZ

address: 1657 East Helen street

department: Immunobiology

country: USA

institute: University of Arizona

description:
inoculum dose 1
od2ex2wk8o.ENA_CP060415_CP060415.1.insert_site_plot.gz
od2ex2wk8o.ENA_CP060414_CP060414.1.insert_site_plot.gz
joined_output.pass2wk8o_CP060414.csv
joined_output.pass2wk8o_CP060415.csv
oralvinocplasmid.csv
oralvinocula.csv

library_source: genomic

data_processing:
Basecalling with Illumina RTA 1.18.54
Read files were merged by sample
Samples were trimmed and filtered on Tn5 sequences using cutadapt V 1.18, pairs lacking Tn5 end  were discarded: -g CTAGAGTCGACCTGC -G cactctttccctacacgacgctcttccgatct --trim-n -m 20 --discard-untrimmed -pair-filter=first
remaining  adaptors were removed with cutadapt  v.1.18 -g AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT -m 20 -pair-filter=first
Reads were mapped to the Nmus chromosome and plasmid using BWA v 0.7.17: bwa mem -k 16 -a -T 25, output files were converted to sorted bam format using samtools v.1.11
Tn5 insertions were plotted using tradis_plot script implemented in BioTradis pipeline V 1.4.5, using reads with mapping quality > 30
Gene insertions were determined using tradis_gene_insert_sites, joined samples by library, sample site and time point using nw831 refseq anotation in embl format. Ignored insertions in 3' 10% of the gene
tradis_essentiality.R used to determine single condition essentiality.
tradis_comparison.R used to quantify abundance of host passage samples in relation to inoculum. -f -t 1
Genome_build: Neisseria musculi NW831 strain AP2031 assembly ASM1429759v1
Supplementary_files_format_and_content: tradis_plot output; insertion counts per nucleotide, tradis_gene_insert_sites output; insertions counts per annotated gene in .csv format of samples merged by library,dose, sample site and timepoint, tradis_essentiality.R output files; .csv format of gene essentiality assignments based on gamma fit distribution of in vitro passage samples, tradis_comparison.R output files; .csv  files of normalized gene abundance  control v. condition calculated via edgeR implemented in biotradis using gene insertion files as input.

molecule: genomic DNA

organism: Neisseria musculi

source_name: oral CFU

growth_protocol: Bacteria for inoculum were recovered from freezer on  GCB Rif Km media for  24 hours, then lawned on a fresh GCB Rif Km plate for an additional 36 hours. DNA was isolated from recovery passage, and initial inoculum after adjustment in PBS to dose OD600

extract_protocol:
Lysis in TES buffer (50 mM Tris pH 8, 20 mM EDTA, 50 mM NaCl) with 1% SDS, Rnase A treatment followed by 25:24:1 Phenol chloroform isoamyl alcohol extraction with ethanol precipitation.
DNA was sheared to 500 bp. Tn5 junction enrichment was performed on samples post end repair, A tailing and ligation to custom adaptors via NEBnext DNA kit. Amplicons from 100-600 bp were size selected and indexed by Nextera V2 dual index Kit. Samples were sequenced on an Illumina MiSeq as 75 bp paired end samples

treatment_protocol: Bacteria were inoculated into oral cavity of mice, and recovered from oral and fecal samples at various timepoints post inoculation on GCB Rif Km prior to DNA extraction.

tag: library replicate

value: library replicate 2

tag: condition

value: mouse passage

tag: timepoint

value: week 8 post inoculation

tag: sample site

value: oral cavity


title: od4ex2wk8f

description:
inoculum dose 2
od4ex2wk8f.ENA_CP060415_CP060415.1.insert_site_plot.gz
od4ex2wk8f.ENA_CP060414_CP060414.1.insert_site_plot.gz
joined_output.wk8fpass2_CP060414.csv
joined_output.wk8fpass2_CP060415.csv
plasmidwk8fvinoc.csv
inoculavwk8f.csv

source_name: fecal CFU

value: fecal pellet


title: Pax7 lineage - E12.5b1_13

description:
ss2_filtered_count.csv
E12.5_b1_1

tag: time point


title: RNA from PC3 control (C) cells.3


title: Pax7 lineage - E12.5b1_12

description:
ss2_filtered_count.csv
E12.5_b1_1


title: B13-1

tag: individual

value: LRS

value: 76 days after diagnosis


title: Pax7 lineage - E12.5b1_17

description:
ss2_filtered_count.csv
E12.5_b1_1


title: od2ex2wk8f

description:
inoculum dose 1
od2ex2wk8f.ENA_CP060415_CP060415.1.insert_site_plot.gz
od2ex2wk8f.ENA_CP060414_CP060414.1.insert_site_plot.gz
joined_output.wk8fpass2_CP060414.csv
joined_output.wk8fpass2_CP060415.csv
plasmidwk8fvinoc.csv
inoculavwk8f.csv


title: B11-2

tag: Stage


title: B13-2

tag: time


title: Pax7 lineage - E12.5b1_11

description:
ss2_filtered_count.csv
E12.5_b1_1

tag: tissue


title: B5-2

value: 53 days after diagnosis


title: od4ex2wk6f

description:
inoculum dose 2
od4ex2wk6f.ENA_CP060415_CP060415.1.insert_site_plot.gz
od4ex2wk6f.ENA_CP060414_CP060414.1.insert_site_plot.gz
joined_output.pass2wk6f_CP060414.csv
joined_output.pass2wk6f_CP060415.csv
plasmidwk6fvinoc.csv
inoculavwk6f.csv

value: week 6 post inoculation


title: od2ex1wk8f

description:
inoculum dose 1
od2ex1wk8f.ENA_CP060415_CP060415.1.insert_site_plot.gz
od2ex1wk8f.ENA_CP060414_CP060414.1.insert_site_plot.gz
joined_output.lib1wk8f_CP060414.csv
joined_output.lib1wk8f_CP060415.csv
plasmidwk8fvinoc.csv
inoculavwk8f.csv

value: library replicate 1


title: Pax7 lineage - E12.5b1_10

description:
ss2_filtered_count.csv
E12.5_b1_1

tag: method


title: Pax7 lineage - E12.5b1_9

description:
ss2_filtered_count.csv
E12.5_b1_9

tag: sequencng type


title: od2ex1wk8o

description:
inoculum dose 1
od2ex1wk8o.ENA_CP060414_CP060414.1.insert_site_plot.gz
od2ex1wk8f.ENA_CP060415_CP060415.1.insert_site_plot.gz
joined_output.lib1wk8o_CP060414.csv
joined_output.lib1wk8o_CP060415.csv
oralvinocplasmid.csv
oralvinocula.csv


title: Gpr65_WT_Th22_2

city: Cambridge

first: Alok

last: Jaiswal

state: MASSACHUSETTS

address: 415 Main Street

institute: The Broad Institute of MIT and Harvard

data_processing:
Demultiplex and basecall to fastq with cellranger mkfastq pipeline made available by CellRanger v5.0.1 software (10x Genomics)
FASTQ reads were aligned to the mm10 mouse transcriptome, to extract cell barcodes and UMI barcodes using the cellranger count function. A digital gene expression (DGE) matrix for each sample was processed further
CellBender package was used to process the raw DGE matrix to remove background or ambient RNA
Cells that satisfied any one of the following criteria were removed: 1) Cells with < 200 detected genes; 2) Cells having outlier number of unique molecular identifiers (UMIs) >10000; 3) Cells having outlier number of identified genes (UMIs) >3000; and 4) percentage of mitochondrial gene expression > 10%
Genome_build: mm10
Supplementary_files_format_and_content: matrix.mtx:  gene expression UMI count matrix of all intron and exon spanning transcripts are in sparse matrix format. Can be read using the Read10x function in Seurat R package
Supplementary_files_format_and_content: barcodes.tsv: cell barcodes for each single cell corresponding to each column in the count matrix
Supplementary_files_format_and_content: genes.tsv: Gene symbols corresponding to each row in the count matrix
Supplementary_files_format_and_content: metadata.tsv: additional collected attributes for each cell barcode in count matrix. Contains informations on final annotated cell types, mouse sample, treatment, tissue site

source_name: mouse splenic CD4+ T

growth_protocol: RPMI 1640 medium (10% FBS + Glutmax + P/S+ Non-essential amino acids +beta-ME)

extract_protocol:
Harvest at day3 in PBS
Single cell suspensions were processed using the Chromium Single Cell 3’ Gene Expression kit (v3, 10x Genomics) per manufacturer’s instructions.
Libraries were sequenced on the Illumina NovaSeq SP upto 100 cycles per manufacturer’s instructions.

treatment_protocol: For Th17 polarization, use 20ng/ml IL-1b, 25ng/ml IL-6 and 20ng/ml IL-23; for Th22 polarization, use 20ng/ml IL-1b, 40ng/ml IL-6, 20ng/ml IL-23 and 400nM FICZ.

tag: strain

tag: age

tag: tissue site

value: Spleen

tag: treatment

value: in vitro Th22 polarization

tag: Sex

value: female


title: od4ex1wk6f

description:
inoculum dose 2
od4ex1wk6f.ENA_CP060415_CP060415.1.insert_site_plot.gz
od4ex1wk6f.ENA_CP060414_CP060414.1.insert_site_plot.gz
joined_output.lib1wk6f_CP060414.csv
joined_output_CP060415.lib1wk6f.csv
plasmidwk6fvinoc.csv
inoculavwk6f.csv


title: Pax7 lineage - E12.5b1_8

description:
ss2_filtered_count.csv
E12.5_b1_8

value: embryonic cells

value: Single-cell

tag: plate batch

value: Plate 1

tag: sequence batch

tag: medium

tag: marker


title: B5-1

value: whole blood


title: od2ex2wk6f

description:
inoculum dose 1
od2ex2wk6f.ENA_CP060415_CP060415.1.insert_site_plot.gz
od2ex2wk6f.ENA_CP060414_CP060414.1.insert_site_plot.gz
joined_output.pass2wk6f_CP060414.csv
joined_output.pass2wk6f_CP060415.csv
plasmidwk6fvinoc.csv
inoculavwk6f.csv

tag: library replicate

value: library replicate 2

tag: condition

tag: timepoint

tag: sample site


title: od4ex2inoculum

description:
inoculum dose 2
od4inex2.ENA_CP060415_CP060415.1.insert_site_plot.gz
od4inex2.ENA_CP060414_CP060414.1.insert_site_plot.gz
joined_output.pass2inoc_CP060414.csv
joined_output.pass2inoc_CP060415.csv
plasmidwk8fvinoc.csv
plasmidwk6fvinoc.csv
oralvinocula.csv
oralvinocplasmid.csv
inoculavwk8f.csv
inoculavwk6f.csv

source_name: inoculum

value: control


title: od4ex1wk8f

description:
inoculum dose 2
od4ex1wk8f.ENA_CP060415_CP060415.1.insert_site_plot.gz
od4ex1wk8f.ENA_CP060414_CP060414.1.insert_site_plot.gz
joined_output.lib1wk8f_CP060414.csv
joined_output.lib1wk8f_CP060415.csv
plasmidwk8fvinoc.csv
inoculavwk8f.csv

value: mouse passage

value: week 8 post inoculation


title: Pax7 lineage - E12.5b1_5

description:
ss2_filtered_count.csv
E12.5_b1_5

tag: time point

value: Batch 1


title: Pax7 lineage - E12.5b1_7

description:
ss2_filtered_count.csv
E12.5_b1_7

tag: tissue


title: Pax7 lineage - E12.5b1_6

description:
ss2_filtered_count.csv
E12.5_b1_6

tag: method


title: B1-2

tag: individual

tag: Stage

value: LRS

tag: time


title: S6-1

value: 33 days after diagnosis


title: Gpr65_WT_Th22_1

tag: strain

tag: age

tag: tissue site

tag: genotype


title: Pax7 lineage - E12.5b1_3

description:
ss2_filtered_count.csv
E12.5_b1_3

tag: sequencng type

tag: plate batch

tag: sequence batch


title: od2ex1wk6f

description:
inoculum dose 1
od2ex1wk6f.ENA_CP060415_CP060415.1.insert_site_plot.gz
od2ex1wk6f.ENA_CP060414_CP060414.1.insert_site_plot.gz
joined_output.lib1wk6f_CP060414.csv
joined_output_CP060415.lib1wk6f.csv
plasmidwk6fvinoc.csv
inoculavwk6f.csv

tag: library replicate

value: fecal pellet


title: B11-1

value: 76 days after diagnosis


title: Gpr65_KO_Th22_2

tag: treatment

tag: Sex


title: Gpr65_WT_Th17_1

value: in vitro Th17 polarization


title: S6-2


title: S15-1

value: ERS

value: 26 days after diagnosis


title: Gpr65_WT_Th17_2

value: Spleen

value: female


title: od4ex1inoculum

description:
inoculum dose 2
od4inex1.ENA_CP060415_CP060415.1.insert_site_plot.gz
od4inex1.ENA_CP060414_CP060414.1.insert_site_plot.gz
joined_output.CP060414_lib1inoc.csv
joined_output.lib1inoc_CP060415.csv
plasmidwk8fvinoc.csv
plasmidwk6fvinoc.csv
oralvinocula.csv
oralvinocplasmid.csv
inoculavwk8f.csv
inoculavwk6f.csv

value: library replicate 1

tag: condition

tag: timepoint

tag: sample site


title: Pax7 lineage - E12.5b1_4

description:
ss2_filtered_count.csv
E12.5_b1_4

tag: tissue

value: embryonic cells

tag: method

value: Single-cell

tag: time point

value: Plate 1

tag: medium

tag: marker


title: Gpr65_KO_Th17_2

tag: strain

tag: age


title: S15-2

tag: individual

tag: Stage

tag: time

value: whole blood


title: S13-1

value: 19 days after diagnosis


title: od2ex2inoculum

description:
inoculum dose 1
od2in2.ENA_CP060415_CP060415.1.insert_site_plot.gz
od2in2.ENA_CP060414_CP060414.1.insert_site_plot.gz
joined_output.pass2inoc_CP060414.csv
joined_output.pass2inoc_CP060415.csv
plasmidwk8fvinoc.csv
plasmidwk6fvinoc.csv
oralvinocula.csv
oralvinocplasmid.csv
inoculavwk8f.csv
inoculavwk6f.csv

value: library replicate 2

value: control


title: Pax7 lineage - E12.5b1_2

description:
ss2_filtered_count.csv
E12.5_b1_2

tag: sequencng type

tag: plate batch

tag: sequence batch

value: Batch 1


title: Gpr65_KO_Th22_1

tag: tissue site

tag: treatment

value: in vitro Th22 polarization

tag: Sex

tag: genotype


title: od2ex1inoculum

description:
inoculum dose 1
od2in1.ENA_CP060415_CP060415.1.insert_site_plot.gz
od2in1.ENA_CP060414_CP060414.1.insert_site_plot.gz
joined_output.CP060414_lib1inoc.csv
joined_output.lib1inoc_CP060415.csv
plasmidwk8fvinoc.csv
plasmidwk6fvinoc.csv
oralvinocula.csv
oralvinocplasmid.csv
inoculavwk8f.csv
inoculavwk6f.csv

tag: library replicate

tag: condition

tag: timepoint

tag: sample site


title: S13-2

tag: tissue


title: Gpr65_KO_Th17_1

tag: strain


title: Pax7 lineage - E12.5b1_1

description:
ss2_filtered_count.csv
E12.5_b1_1

tag: method

tag: time point

tag: medium

tag: marker


title: pass1

description:
pass1.ENA_CP060415_CP060415.1.insert_site_plot.gz
pass1.ENA_CP060414_CP060414.1.insert_site_plot.gz
pass1.ENA_CP060414_CP060414_gene_insert_sites.csv
pass1.ENA_CP060415_CP060415.1.pass1plasmid.csv
pass1.ENA_CP060414_CP060414_gene_insert_sites.csv.essen.csv
pass1.ENA_CP060414_CP060414_gene_insert_sites.csv.ambig.csv
pass1.ENA_CP060414_CP060414_gene_insert_sites.csv.all.csv

source_name: library stock

value: recovery


title: Infected-24hrs-3

status: Public on Apr 11 2022

city: New Delhi

first: Sujatha

last: Sunil

state: Delhi

address: Aruna Asaf Ali Road

department: Vector Borne Disease Group

country: India

institute: International Centre for genetic engineering and Biotechnology

data_processing:
Quality checks were performed using FastQC
Sequenced reads were trimmed for adaptor sequence using cutadapt  then mapped to aedes aegypti genome assembly using STAR v2.7.3a.
Feautecount tool has been used to count read per gene
Differential expression analysis has been done using NOISeq.
Genome_build: AaegL5.3

organism: Aedes aegypti

source_name: Aedes aegypti epithelial cells derived from freshly hatched larvae

growth_protocol: Aag2 were maintained in L-15 medium supplemented with 10% (v/v) FBS,  2mM L -Glutamine, 10% (v/v) TBPS and antibiotics at 28°C in a humidified atmosphere without CO2

extract_protocol:
Total RNA was isolated using TRIZOL method
Libraries were prepared according to illumina's instructions using Truseq RNA library prep kit

treatment_protocol: Aag2 cells were incubated  with chikungunya virus in media devoid of supplements for 2 hours at a multiplicity of infection=1

tag: cell type

value: Aedes aegypti epithelial cells

value: 24 hours post infection with Chikungunya virus


title: Uninfected-1

value: Untreated


title: Infected-24hrs-1


title: RNASeq_CtrA_NA1000_2

city: Namur

first: Regis

last: Hallez

address: 61 Rue de Bruxelles

country: Belgium

institute: UNamur

data_processing:
Between 2 x 10^7 and 3 x 10^7 paired-end sequence reads (2 x 100) were first mapped on the genome of C. crescentus NA1000 (NC_011916.1) using Galaxy
The number of reads overlapping each genomic position was computed using Galaxy
A DESeq2 analysis was then peformed between the WT and DchvI samples using Galaxy
Assembly: NC_011916.1
Supplementary files format and content: The xls files report ChvI RNA-Seq regulon with Fold Change (FC) between WT and DchvI strains. The  different columns are organized as follows: column 1: Gene_ID (CCNA gene identification number); column 2: Name (Predicted function of the corresponding gene); column 3: Base_mean (mean of normalized counts); column 4: log2(FC_WT/DchvI) (base 2 log of fold change between WT and DchvI); column 5: P-value; column 6: P-adj (adjusted P-value); column 7: FC_WT/DchvI (fold change between WT and DchvI); column 8: FC_DchvI/WT (fold change between DchvI and WT); column 9: log2(FC_DchvI/WT) (base 2 log of fold change between DchvI and WT); column 10: -(log_FDR) (-base10 log of false discovery rate)

organism: Caulobacter vibrioides

source_name: WT

growth_protocol: C. crescentus strains grown overnight at 30°C in complex media (PYE) to saturation before being diluted in fresh PYE media and grown at 30°C to mid-exponential phase (OD660~0.3).

extract_protocol:
total RNA was extracted with RNeasy® Protect Bacteria Kit from Qiagen and following manufacturer’s instructions.
ChIP-Seq libraries were prepared at the BIO.be company (Belgium) using the RNASeq TTRNA library according to the manufacturer's instructions, after rRNA depletion and cDNA synthesis.

treatment_protocol: Then, 6% Sucrose were added  and cells were incubated at 30°C for 4 hours.

value: WT

value: Mid-exponential phase in synthetic complex medium (PYE) supplemented with 6% Sucrose


title: RNASeq_CtrA_NA1000_1


title: ChIP-Seq_C. crescentus_CtrA_NA1000

data_processing:
Around 2 x 10^7 paired-end sequence reads (2 x 75) were first mapped on the genome of C. crescentus NA1000 (NC_011916.1) and converted to SAM using BWA and SAM tools from the sourceforge server (https://sourceforge.net/)
MACS2 algorithm was used to model the length of DNA fragment as well as the shift size.
The number of reads overlapping each genomic position was computed using custom Python scripts and the previously modeled DNA fragment and shift sizes.
A peak was defined as the genomic region where each position has more reads than the 97th percentile. The candidate peaks were annotated using custom Python scripts.
Assembly: NC_011916.1
Supplementary files format and content: The xls files report ChvI ChIP-Seq peaks in the WT of Caulobacter. The  different columns are organized as follows: column 1: Start_Coord (coordinates for the start of the peak); column 2: End_Coord (coordinates for the end of the peak); column 3: Summit (highest number of reads of peak); column 4:  Summit_Coord (coordinates for the highest number of reads of peak); column 5: Reads (number of reads in the peak); column 6: Reads Norm (number of reads / total number of alignedreads ); column 7: GeneUp (CCNA_number of gene upstream of the peak based on the summit); column 8: GeneUpName (name of gene upstream of the peak); column 9: GeneDown ( CCNA_number of gene downstream of the peak based on the summit); column 10: GeneDownName (name of gene downstream of the peak); column 11: OperonUp (Operon in which gene upstream of the peak belongs); column 12: OperonDown (Operon in which gene downstream of the peak belongs).

growth_protocol: C. crescentus strains grown overnight at 30°C in synthetic media (M2G) to saturation before being diluted in fresh M2G media and grown at 30°C to mid-exponential phase (OD660~0.5-0.6).

extract_protocol:
Resuspended pellets were lysed with 2 µl of Ready-lyse lysozyme solution (Epicentre)  for 5 min at RT. Protease inhibitors (Roche) was added and incubated for 10 min. Then, 550 µl of ChIP buffer (1.1% triton X-100, 1.2 mM EDTA, 16.7 mM Tris-HCl pH 8.1, 167 mM NaCl, plus protease inhibitors) was added to the lysate and incubated at 37 °C for 10 min before sonication (2 x 8 bursts of 30 sec on ice using a Diagenode Bioruptor) to shear DNA fragments to a length of 300 to 500 bp. Lysate was cleared by centrifugation for 10 min at 12,500 rpm at 4 °C and protein content was evaluated by measuring OD280. Then, 7.5 mg of proteins were diluted in ChIP buffer supplemented with 0.01% SDS and precleared 1 h at 4 °C with 50 µl of protein A agarose beads (BioRad) and 100 µg BSA. One µl of polyclonal anti-ChvI antibodies, produced by rabbits (CER Groupe, Marloie, Belgium) immunised with purified His6-ChvI protein, were added to the supernatant before overnight incubation at 4 °C under gentle agitation. Eighty µl of BSA pre-saturated protein A agarose beads were added to the solution for 2 h at 4 °C with rotation, washed once with low salt buffer (0.1% SDS, 1% Triton X-100, 2 mM EDTA, 20 mM Tris-HCl pH 8.1, 150 mM NaCl), once with high salt buffer (0.1% SDS, 1% Triton X-100, 2 mM EDTA, 20 mM Tris-HCl pH 8.1, 500 mM NaCl), once with LiCl buffer (0.25 M LiCl, 1% NP-40, 1% deoxycholate, 1 mM EDTA, 10 mM Tris-HCl pH 8.1), once with TE buffer (10 mM Tris-HCl pH 8.1, 1 mM EDTA) at 4 °C and a second wash with TE buffer at RT. The DNA-protein complexes were eluted twice in 250 µl freshly prepared elution buffer (0.1 M NaHCO3, 1% SDS). NaCl was added at a concentration of 300 mM to the combined eluates (500 µl) before overnight incubation at 65 °C to reverse the crosslink. The samples were treated with 20 µg of proteinase K in 40 mM EDTA and 40 mM Tris-HCl (pH 6.5) for 2 h at 45 °C. DNA was extracted using Nucleospin PCR clean-up kit (Macherey-Nagel) and resuspended in 50 µl elution buffer (5 mM Tris-HCl pH 8.5). Sample libraries of immunoprecipitated chromatin and deep-sequencing were performed at the Genomicscore KULeuven (Belgium).
ChIP-Seq libraries were prepared at the BIO.be company (Belgium) using the Illumina TruSeq DNA library  according to the manufacturer's instructions.

treatment_protocol: 80 ml of mid-log phase cells (OD660~ 0.5-0.6) were cross-linked in 1% formaldehyde and 10 mM sodium phosphate (pH 7.6) at room temperature for 10 min and 30 min on ice thereafter. Crosslinking was stopped by addition of 125 mM glycine and incubated for 5 min on ice. Cells were washed thrice in PBS resuspended in 450 µl in TES buffer (10 mM Tris-HCl pH 7.5, 1 mM EDTA, 100 mM NaCl)

tag: chip antibody

value: anti-CtrA antibody

value: Mid-exponential phase in synthetic minimal medium (M2G)


title: Tissue_Age_Associated_Me_20073

type: genomic

city: Philadelphia

first: Wanding

last: Zhou

state: PA

address: 3501 Civic Center Blvd

department: Pathology and Lab Medicine

institute: Children's Hospital of Philadelphia

description:
Tissue Biology
204875570045_R04C01

hyb_protocol: Standard Illumina Protocol

scan_protocol: Standard Illumina Protocol

data_processing:
SeSAMe software v1.10
20210916_GEO_processed_matrix.csv (Normalized average Beta)
20210916_GEO_signal_intensity_matrix.csv (Unmethylated and methylated signal intensities)

label: Cy5 and Cy3

source_name: Kidney, Mouse DNA, Tissue

label_protocol: Standard Illumina Protocol

extract_protocol: Genomic DNA was isolated from tissue samples using the AllPrep DNA/RNA Mini Kit (QIAGEN)

value: Female

tag: site

value: Lab 1

tag: cell line

value: Kidney

tag: sorted cell type

tag: pathology

value: Normal


title: RNASeq_CtrA_NA1000 DchvI_1

source_name: DchvI

value: DchvI

tag: treatment


title: Infected-24hrs-2


title: Tissue_Age_Associated_Me_20189

description:
Tissue Biology
204875570045_R06C02

tag: Sex


title: Uninfected-3


title: Developmental_Biology_22238

description:
Tissue Biology
204879580008_R03C01

source_name: Fetal Liver, Embryonic DNA, Tissue

value: Male

value: Fetal Liver


title: Tissue_Age_Associated_Me_20093

description:
Tissue Biology
204875570014_R03C01


title: Tissue_Age_Associated_Me_21012

description:
Tissue Biology
204875570022_R01C02


title: Tissue_Age_Associated_Me_20215

description:
Tissue Biology
204875570028_R02C02


title: RNASeq_CtrA_NA1000 DchvI_2


title: Uninfected-2


title: pass2

description:
pass2.ENA_CP060415_CP060415.1.insert_site_plot.gz
pass2.ENA_CP060414_CP060414.1.insert_site_plot.gz
pass2.ENA_CP060414_CP060414.1.tradis_gene_insert_sites.csv
pass2.ENA_CP060415_CP060415.1.tradis_gene_insert_sites.csv
pass2.ENA_CP060414_CP060414.1.tradis_gene_insert_sites.csv.all.csv
pass2.ENA_CP060414_CP060414.1.tradis_gene_insert_sites.csv.essen.csv
pass2.ENA_CP060414_CP060414.1.tradis_gene_insert_sites.csv.ambig.csv

tag: library replicate

value: library replicate 2

tag: condition


title: Developmental_Biology_22306

description:
Tissue Biology
204879580043_R05C02

source_name: Kidney, Embryonic DNA, Tissue


title: Developmental_Biology_22297

description:
Tissue Biology
204879580043_R02C01


title: Tissue_Age_Associated_Me_20067

description:
Tissue Biology
204875570027_R04C02

source_name: Hind Brain, Mouse DNA, Tissue

value: Hind Brain


title: Developmental_Biology_22290

description:
Tissue Biology
204879580022_R01C02


title: Tissue_Age_Associated_Me_20116

description:
Tissue Biology
204875570048_R01C02


title: Tissue_Age_Associated_Me_20263

description:
Tissue Biology
204875570051_R03C02


title: Developmental_Biology_22234

description:
Tissue Biology
204879580005_R05C02


title: Tissue_Age_Associated_Me_20235

description:
Tissue Biology
204875570015_R02C02


title: Tissue_Age_Associated_Me_20173

description:
Tissue Biology
204875570023_R03C02


title: Tissue_Age_Associated_Me_20118

description:
Tissue Biology
204875570048_R03C02


title: Tissue_Age_Associated_Me_20172

description:
Tissue Biology
204875570023_R02C02


title: Tissue_Age_Associated_Me_21011

description:
Tissue Biology
204875570022_R06C01


title: Tissue_Age_Associated_Me_20048

description:
Tissue Biology
204875570008_R06C02


title: Tissue_Age_Associated_Me_20075

description:
Tissue Biology
204875570045_R06C01

source_name: Heart, Mouse DNA, Tissue

value: Heart


title: Tissue_Age_Associated_Me_20097

description:
Tissue Biology
204875570014_R01C02


title: Tissue_Age_Associated_Me_20115

description:
Tissue Biology
204875570048_R06C01

source_name: Frontal Lobe Brain, Mouse DNA, Tissue

value: Frontal Lobe Brain


title: Developmental_Biology_22307

description:
Tissue Biology
204879580043_R06C02

source_name: Heart, Embryonic DNA, Tissue


title: Tissue_Age_Associated_Me_20100

description:
Tissue Biology
204875570014_R04C02


title: Tissue_Age_Associated_Me_20183

description:
Tissue Biology
204875570045_R02C02


title: Tissue_Age_Associated_Me_20210

description:
Tissue Biology
204875570028_R03C01


title: Developmental_Biology_22289

description:
Tissue Biology
204879580022_R06C01


title: Tissue_Age_Associated_Me_20068

description:
Tissue Biology
204875570045_R01C02


title: Tissue_Age_Associated_Me_20066

description:
Tissue Biology
204875570027_R03C02


title: Tissue_Age_Associated_Me_20209

description:
Tissue Biology
204875570028_R02C01


title: Developmental_Biology_22303

description:
Tissue Biology
204879580043_R02C02

source_name: Fetal Limb, Embryonic DNA, Tissue

value: Fetal Limb


title: Tissue_Age_Associated_Me_20096

description:
Tissue Biology
204875570014_R06C01


title: Tissue_Age_Associated_Me_20171

description:
Tissue Biology
204875570023_R01C02


title: Tissue_Age_Associated_Me_20181

description:
Tissue Biology
204875570011_R04C01


title: Developmental_Biology_22286

description:
Tissue Biology
204879580022_R03C01


title: Developmental_Biology_22295

description:
Tissue Biology
204879580022_R06C02


title: Developmental_Biology_22279

description:
Tissue Biology
204879580021_R02C02


title: Developmental_Biology_22273

description:
Tissue Biology
204879580021_R02C01


title: Developmental_Biology_22261

description:
Tissue Biology
204879580020_R02C01

value: Mixed


title: Developmental_Biology_22255

description:
Tissue Biology
204879580009_R02C02


title: Developmental_Biology_22249

description:
Tissue Biology
204879580009_R02C01


title: Developmental_Biology_22304

description:
Tissue Biology
204879580043_R03C02

source_name: Fetal Intestine, Embryonic DNA, Tissue

value: Fetal Intestine


title: Developmental_Biology_22296

description:
Tissue Biology
204879580043_R01C01


title: Developmental_Biology_22243

description:
Tissue Biology
204879580008_R02C02


title: Tissue_Age_Associated_Me_20113

description:
Tissue Biology
204875570048_R04C01


title: Developmental_Biology_22280

description:
Tissue Biology
204879580021_R03C02


title: Developmental_Biology_22263

description:
Tissue Biology
204879580020_R04C01


title: Developmental_Biology_22274

description:
Tissue Biology
204879580021_R03C01


title: Developmental_Biology_22257

description:
Tissue Biology
204879580009_R04C02


title: Developmental_Biology_22251

description:
Tissue Biology
204879580009_R04C01


title: Developmental_Biology_22294

description:
Tissue Biology
204879580022_R05C02

source_name: Fetal Brain, Embryonic DNA, Tissue

value: Fetal Brain


title: Developmental_Biology_22302

description:
Tissue Biology
204879580043_R01C02


title: Developmental_Biology_22278

description:
Tissue Biology
204879580021_R01C02


title: Developmental_Biology_22245

description:
Tissue Biology
204879580008_R04C02


title: Developmental_Biology_22246

description:
Tissue Biology
204879580008_R05C02


title: Developmental_Biology_22258

description:
Tissue Biology
204879580009_R05C02


title: Developmental_Biology_22272

description:
Tissue Biology
204879580021_R01C01


title: Developmental_Biology_22264

description:
Tissue Biology
204879580020_R05C01


title: Tissue_Age_Associated_Me_21015

description:
Tissue Biology
204875570022_R03C02

source_name: Fat, Mouse DNA, Tissue

value: Fat


title: Tissue_Age_Associated_Me_20177

description:
Tissue Biology
204875570011_R01C01


title: Developmental_Biology_22267

description:
Tissue Biology
204879580020_R02C02


title: Developmental_Biology_22237

description:
Tissue Biology
204879580008_R02C01


title: Developmental_Biology_22233

description:
Tissue Biology
204879580005_R04C02


title: Tissue_Age_Associated_Me_20063

description:
Tissue Biology
204875570027_R06C01

source_name: Esophagus, Mouse DNA, Tissue

value: Esophagus


title: Tissue_Age_Associated_Me_20203

description:
Tissue Biology
204875570038_R06C01

value: Female


title: Tissue_Age_Associated_Me_20255

description:
Tissue Biology
204875570051_R04C01

value: Lab 1


title: Tissue_Age_Associated_Me_20202

description:
Tissue Biology
204875570038_R05C01


title: Tissue_Age_Associated_Me_20228

description:
Tissue Biology
204875570015_R02C01


title: Tissue_Age_Associated_Me_21016

description:
Tissue Biology
204875570022_R04C02


title: Developmental_Biology_22287

description:
Tissue Biology
204879580022_R04C01


title: Tissue_Age_Associated_Me_20179

description:
Tissue Biology
204875570011_R03C01


title: Tissue_Age_Associated_Me_20041

description:
Tissue Biology
204875570008_R05C01


title: Tissue_Age_Associated_Me_20127

description:
Tissue Biology
204875570071_R06C01

source_name: Colon, Mouse DNA, Tissue

value: Colon


title: Tissue_Age_Associated_Me_20260

description:
Tissue Biology
204875570051_R06C01

value: Normal


title: Developmental_Biology_22285

description:
Tissue Biology
204879580022_R02C01


title: Tissue_Age_Associated_Me_20258

description:
Tissue Biology
204875570051_R05C01


title: Tissue_Age_Associated_Me_20208

description:
Tissue Biology
204875570038_R04C02


title: Tissue_Age_Associated_Me_20128

description:
Tissue Biology
204875570071_R01C02


title: Tissue_Age_Associated_Me_20129

description:
Tissue Biology
204875570071_R02C02


title: Tissue_Age_Associated_Me_21018

description:
Tissue Biology
204875570022_R06C02


title: Tissue_Age_Associated_Me_20102

description:
Tissue Biology
204875570014_R06C02


title: Tissue_Age_Associated_Me_20207

description:
Tissue Biology
204875570038_R03C02


title: Tissue_Age_Associated_Me_20123

description:
Tissue Biology
204875570071_R02C01


title: Tissue_Age_Associated_Me_20206

description:
Tissue Biology
204875570038_R02C02


title: Developmental_Biology_22252

description:
Tissue Biology
204879580009_R05C01


title: Tissue_Age_Associated_Me_20061

description:
Tissue Biology
204875570027_R04C01


title: Tissue_Age_Associated_Me_20165

description:
Tissue Biology
204875570023_R01C01


title: Tissue_Age_Associated_Me_20060

description:
Tissue Biology
204875570027_R03C01


title: Tissue_Age_Associated_Me_20166

description:
Tissue Biology
204875570023_R02C01


title: Tissue_Age_Associated_Me_20062

description:
Tissue Biology
204875570027_R05C01


title: Tissue_Age_Associated_Me_20164

description:
Tissue Biology
204875570015_R06C02


title: Tissue_Age_Associated_Me_21005

description:
Tissue Biology
204875570022_R02C01


title: Tissue_Age_Associated_Me_20091

description:
Tissue Biology
204875570014_R01C01


title: Tissue_Age_Associated_Me_20089

description:
Tissue Biology
204875570011_R05C02


title: Tissue_Age_Associated_Me_20232

description:
Tissue Biology
204875570015_R05C01


title: Tissue_Age_Associated_Me_21003

description:
Tissue Biology
204875570051_R06C02


title: Tissue_Age_Associated_Me_21004

description:
Tissue Biology
204875570022_R01C01


title: Tissue_Age_Associated_Me_20046

description:
Tissue Biology
204875570008_R04C02


title: Tissue_Age_Associated_Me_20230

description:
Tissue Biology
204875570015_R03C01


title: Tissue_Age_Associated_Me_20090

description:
Tissue Biology
204875570011_R06C02


title: Tissue_Age_Associated_Me_20044

description:
Tissue Biology
204875570008_R02C02


title: Tissue_Age_Associated_Me_20234

description:
Tissue Biology
204875570015_R01C02

source_name: Cecum, Mouse DNA, Tissue

value: Cecum


title: Tissue_Age_Associated_Me_20086

description:
Tissue Biology
204875570011_R02C02

value: Male


title: Tissue_Age_Associated_Me_20042

description:
Tissue Biology
204875570008_R06C01


title: SNPs_22037

description:
Strain SNP
204875570074_R06C01

source_name: Tail, Mouse DNA, Tissue

value: LP/J

value: Tail


title: SNPs_22043

description:
Strain SNP
204875570074_R06C02


title: Tissue_Age_Associated_Me_20169

description:
Tissue Biology
204875570023_R05C01


title: SNPs_22041

description:
Strain SNP
204875570074_R04C02


title: SNPs_22042

description:
Strain SNP
204875570074_R05C02


title: Tissue_Age_Associated_Me_20045

description:
Tissue Biology
204875570008_R03C02


title: SNPs_22039

description:
Strain SNP
204875570074_R02C02


title: SNPs_22034

description:
Strain SNP
204875570074_R03C01

value: BTBR_T+ ITpr3tf/J


title: Tissue_Age_Associated_Me_21008

description:
Tissue Biology
204875570022_R04C01


title: Tissue_Age_Associated_Me_20126

description:
Tissue Biology
204875570071_R05C01


title: Tissue_Age_Associated_Me_20201

description:
Tissue Biology
204875570038_R04C01


title: SNPs_22081

description:
Strain SNP
204875570064_R01C01

value: AKR/J


title: SNPs_22074

description:
Strain SNP
204875570061_R06C01

value: NZB/BINJ


title: SNPs_22079

description:
Strain SNP
204875570061_R05C02

value: NOD/ShiLtJ


title: SNPs_22073

description:
Strain SNP
204875570061_R05C01

value: NZW/LacJ


title: SNPs_22040

description:
Strain SNP
204875570074_R03C02


title: SNPs_22036

description:
Strain SNP
204875570074_R05C01


title: SNPs_22078

description:
Strain SNP
204875570061_R04C02


title: SNPs_22038

description:
Strain SNP
204875570074_R01C02


title: Tissue_Age_Associated_Me_20231

description:
Tissue Biology
204875570015_R04C01


title: SNPs_22067

description:
Strain SNP
204875570056_R06C02

value: KK/HiJ


title: SNPs_22080

description:
Strain SNP
204875570061_R06C02


title: SNPs_22072

description:
Strain SNP
204875570061_R04C01


title: SNPs_22064

description:
Strain SNP
204875570056_R03C02

value: PWK/PhJ


title: SNPs_22056

description:
Strain SNP
204875570056_R01C01


title: SNPs_22062

description:
Strain SNP
204875570056_R01C02

value: MOLF/EiJ


title: SNPs_22077

description:
Strain SNP
204875570061_R03C02

value: FVB/NJ


title: SNPs_22071

description:
Strain SNP
204875570061_R03C01

value: Female

value: NZO/HlLtJ


title: SNPs_22076

description:
Strain SNP
204875570061_R02C02

value: Lab 1


title: SNPs_22069

description:
Strain SNP
204875570061_R02C01

value: WSB/EiJ

value: Normal


title: SNPs_22035

description:
Strain SNP
204875570074_R04C01


title: SNPs_22075

description:
Strain SNP
204875570061_R01C02


title: SNPs_22053

description:
Strain SNP
204875570031_R04C02


title: SNPs_22047

description:
Strain SNP
204875570031_R04C01


title: SNPs_22046

description:
Strain SNP
204875570031_R03C01

value: Male


title: SNPs_22061

description:
Strain SNP
204875570056_R06C01

value: CAST/EiJ


title: SNPs_22068

description:
Strain SNP
204875570061_R01C01

value: Tail


title: SNPs_22129

description:
Strain SNP
204875570083_R01C01

source_name: Spleen, Mouse DNA, Tissue

value: Spleen


title: SNPs_22066

description:
Strain SNP
204875570056_R05C02


title: SNPs_22128

description:
Strain SNP
204875570077_R06C02

value: AKR/J


title: SNPs_22065

description:
Strain SNP
204875570056_R04C02


title: SNPs_22059

description:
Strain SNP
204875570056_R04C01


title: SNPs_22063

description:
Strain SNP
204875570056_R02C02


title: SNPs_22122

description:
Strain SNP
204875570077_R06C01

value: NZB/BINJ


title: SNPs_22055

description:
Strain SNP
204875570031_R06C02


title: SNPs_22126

description:
Strain SNP
204875570077_R04C02

value: NOD/ShiLtJ


title: SNPs_22049

description:
Strain SNP
204875570031_R06C01

value: A/J


title: SNPs_22048

description:
Strain SNP
204875570031_R05C01


title: SNPs_22125

description:
Strain SNP
204875570077_R03C02


title: SNPs_22052

description:
Strain SNP
204875570031_R03C02


title: SNPs_22051

description:
Strain SNP
204875570031_R02C02

value: BALB/cJ


title: SNPs_22060

description:
Strain SNP
204875570056_R05C01


title: SNPs_22116

description:
Strain SNP
204875570072_R06C02


title: SNPs_22057

description:
Strain SNP
204875570056_R02C01


title: SNPs_22050

description:
Strain SNP
204875570031_R01C02


title: SNPs_22045

description:
Strain SNP
204875570031_R02C01

value: CBA/J


title: SNPs_22110

description:
Strain SNP
204875570072_R06C01

value: MOLF/EiJ


title: SNPs_22044

description:
Strain SNP
204875570031_R01C01


title: SNPs_22114

description:
Strain SNP
204875570072_R04C02

value: KK/HiJ


title: SNPs_22113

description:
Strain SNP
204875570072_R03C02

value: Female

value: PWK/PhJ


title: SNPs_22108

description:
Strain SNP
204875570072_R04C01

value: Lab 1


title: SNPs_22107

description:
Strain SNP
204875570072_R03C01


title: SNPs_22106

description:
Strain SNP
204875570072_R02C01


title: SNPs_22121

description:
Strain SNP
204875570077_R05C01

value: NZW/LacJ


title: SNPs_22124

description:
Strain SNP
204875570077_R02C02

value: FVB/NJ

value: Normal


title: SNPs_22054

description:
Strain SNP
204875570031_R05C02

value: Male

value: Mixed


title: SNPs_22119

description:
Strain SNP
204875570077_R03C01

value: NZO/HlLtJ

value: Spleen


title: SNPs_22120

description:
Strain SNP
204875570077_R04C01


title: SNPs_22104

description:
Strain SNP
204875570066_R06C02


title: SNPs_22118

description:
Strain SNP
204875570077_R02C01


title: SNPs_22123

description:
Strain SNP
204875570077_R01C02

value: NZB/BINJ


title: SNPs_22103

description:
Strain SNP
204875570066_R05C02


title: SNPs_22117

description:
Strain SNP
204875570077_R01C01

value: WSB/EiJ


title: SNPs_22109

description:
Strain SNP
204875570072_R05C01

value: CAST/EiJ


title: SNPs_22127

description:
Strain SNP
204875570077_R05C02

value: NOD/ShiLtJ


title: SNPs_22112

description:
Strain SNP
204875570072_R02C02


title: SNPs_22111

description:
Strain SNP
204875570072_R01C02


title: SNPs_22086

description:
Strain SNP
204875570064_R06C01


title: SNPs_22085

description:
Strain SNP
204875570064_R05C01


title: SNPs_22090

description:
Strain SNP
204875570064_R04C02


title: SNPs_22089

description:
Strain SNP
204875570064_R03C02


title: SNPs_22098

description:
Strain SNP
204875570066_R06C01

value: BALB/cJ


title: SNPs_22105

description:
Strain SNP
204875570072_R01C01


title: SNPs_22097

description:
Strain SNP
204875570066_R05C01

value: A/J


title: SNPs_22102

description:
Strain SNP
204875570066_R04C02


title: SNPs_22082

description:
Strain SNP
204875570064_R02C01

value: BTBR_T+ ITpr3tf/J


title: SNPs_22115

description:
Strain SNP
204875570072_R05C02

value: Female

value: KK/HiJ


title: SNPs_22088

description:
Strain SNP
204875570064_R02C02

value: Lab 1


title: SNPs_22087

description:
Strain SNP
204875570064_R01C02


title: SNPs_22101

description:
Strain SNP
204875570066_R03C02


title: SNPs_22205

description:
Strain SNP
204879580024_R05C01

source_name: Liver, Mouse DNA, Tissue

value: NZW/LacJ

value: Liver


title: SNPs_22203

description:
Strain SNP
204879580024_R03C01

value: Normal


title: SNPs_22204

description:
Strain SNP
204879580024_R04C01

value: Male


title: SNPs_22095

description:
Strain SNP
204875570066_R03C01


title: SNPs_22096

description:
Strain SNP
204875570066_R04C01


title: SNPs_22202

description:
Strain SNP
204879580024_R02C01


title: SNPs_22100

description:
Strain SNP
204875570066_R02C02


title: SNPs_22091

description:
Strain SNP
204875570064_R05C02


title: SNPs_22092

description:
Strain SNP
204875570064_R06C02

value: CBA/J


title: SNPs_22084

description:
Strain SNP
204875570064_R04C01

value: LP/J


title: SNPs_22083

description:
Strain SNP
204875570064_R03C01

value: Spleen


title: SNPs_21608_2

description:
Strain SNP
204879580004_R02C01

value: NZB/BINJ


title: SNPs_22206

description:
Strain SNP
204879580024_R06C01


title: SNPs_22207

description:
Strain SNP
204879580024_R01C02

value: WSB/EiJ


title: SNPs_22199

description:
Strain SNP
204875570049_R05C02

value: MOLF/EiJ


title: SNPs_22093

description:
Strain SNP
204875570066_R01C01


title: SNPs_22201

description:
Strain SNP
204879580024_R01C01

value: NOD/ShiLtJ


title: SNPs_22094

description:
Strain SNP
204875570066_R02C01


title: SNPs_22194

description:
Strain SNP
204875570049_R06C01


title: SNPs_22192

description:
Strain SNP
204875570049_R04C01


title: SNPs_22197

description:
Strain SNP
204875570049_R03C02


title: SNPs_22191

description:
Strain SNP
204875570049_R03C01


title: SNPs_22196

description:
Strain SNP
204875570049_R02C02


title: SNPs_22189

description:
Strain SNP
204875570049_R01C01


title: SNPs_22195

description:
Strain SNP
204875570049_R01C02

value: FVB/NJ


title: SNPs_21615

description:
Strain SNP
204875570043_R05C01


title: SNPs_21598

description:
Strain SNP
204875570043_R06C01


title: SNPs_22099

description:
Strain SNP
204875570066_R01C02

value: BALB/cJ


title: SNPs_21614

description:
Strain SNP
204875570074_R02C01

value: PWK/PhJ


title: SNPs_21612

description:
Strain SNP
204875570043_R03C01


title: SNPs_21569_2

description:
Strain SNP
204879580004_R01C01

value: Female

value: A/J


title: SNPs_21613

description:
Strain SNP
204875570074_R01C01

value: Lab 1


title: SNPs_21602

description:
Strain SNP
204875570042_R05C01


title: SNPs_22200

description:
Strain SNP
204875570049_R06C02


title: SNPs_21603

description:
Strain SNP
204875570042_R06C01


title: SNPs_21608

description:
Strain SNP
204875570042_R05C02


title: SNPs_22198

description:
Strain SNP
204875570049_R04C02


title: SNPs_22193

description:
Strain SNP
204875570049_R05C01


title: SNPs_21605

description:
Strain SNP
204875570042_R02C02


title: SNPs_21604

description:
Strain SNP
204875570042_R01C02


title: SNPs_21606

description:
Strain SNP
204875570042_R03C02


title: SNPs_21595

description:
Strain SNP
204875570042_R01C01


title: SNPs_22190

description:
Strain SNP
204875570049_R02C01


title: SNPs_21586

description:
Strain SNP
204875570040_R04C01


title: SNPs_21585

description:
Strain SNP
204875570040_R03C01


title: SNPs_21593

description:
Strain SNP
204875570040_R05C02


title: SNPs_21616

description:
Strain SNP
204875570043_R04C01


title: SNPs_21588

description:
Strain SNP
204875570040_R06C01

value: CAST/EiJ


title: SNPs_21587

description:
Strain SNP
204875570040_R05C01

value: Liver


title: SNPs_21611

description:
Strain SNP
204875570043_R02C01

value: NZW/LacJ

value: Normal


title: SNPs_21610

description:
Strain SNP
204875570043_R01C01

value: Male

value: NZO/HlLtJ


title: SNPs_21581

description:
Strain SNP
204875570037_R05C02


title: SNPs_21580

description:
Strain SNP
204875570037_R04C02


title: SNPs_21607

description:
Strain SNP
204875570042_R04C02


title: SNPs_21609

description:
Strain SNP
204875570042_R06C02


title: SNPs_21601

description:
Strain SNP
204875570042_R04C01

value: LP/J


title: SNPs_21577

description:
Strain SNP
204875570037_R01C02


title: SNPs_21597

description:
Strain SNP
204875570042_R03C01

value: KK/HiJ


title: SNPs_21594

description:
Strain SNP
204875570040_R06C02


title: SNPs_21571

description:
Strain SNP
204875570037_R01C01

value: AKR/J


title: SNPs_22187

description:
Strain SNP
204875570035_R05C02


title: SNPs_22186

description:
Strain SNP
204875570035_R04C02


title: SNPs_22181

description:
Strain SNP
204875570035_R05C01


title: SNPs_22180

description:
Strain SNP
204875570035_R04C01


title: SNPs_21592

description:
Strain SNP
204875570040_R04C02


title: SNPs_21591

description:
Strain SNP
204875570040_R03C02


title: SNPs_21582

description:
Strain SNP
204875570037_R06C02


title: SNPs_21584

description:
Strain SNP
204875570040_R02C01


title: SNPs_21589

description:
Strain SNP
204875570040_R01C02

value: CBA/J


title: SNPs_22183

description:
Strain SNP
204875570035_R01C02

value: BTBR_T+ ITpr3tf/J


title: SNPs_21575

description:
Strain SNP
204875570037_R05C01


title: SNPs_21583

description:
Strain SNP
204875570040_R01C01


title: SNPs_21574

description:
Strain SNP
204875570037_R04C01


title: SNPs_21576

description:
Strain SNP
204875570037_R06C01


title: SNPs_21573

description:
Strain SNP
204875570037_R03C01


title: SNPs_21579

description:
Strain SNP
204875570037_R03C02


title: SNPs_21572

description:
Strain SNP
204875570037_R02C01


title: SNPs_21567

description:
Strain SNP
204875570017_R03C02


title: SNPs_22188

description:
Strain SNP
204875570035_R06C02


title: SNPs_21578

description:
Strain SNP
204875570037_R02C02


title: SNPs_22140

description:
Strain SNP
204875570083_R06C02

value: Frontal Lobe Brain


title: SNPs_22182

description:
Strain SNP
204875570035_R06C01


title: SNPs_22134

description:
Strain SNP
204875570083_R06C01


title: SNPs_22138

description:
Strain SNP
204875570083_R04C02


title: SNPs_22184

description:
Strain SNP
204875570035_R02C02


title: SNPs_22178

description:
Strain SNP
204875570035_R02C01


title: SNPs_21570

description:
Strain SNP
204875570017_R06C02


title: SNPs_22179

description:
Strain SNP
204875570035_R03C01


title: SNPs_21568

description:
Strain SNP
204875570017_R04C02


title: SNPs_21590

description:
Strain SNP
204875570040_R02C02


title: SNPs_22137

description:
Strain SNP
204875570083_R03C02


title: SNPs_22133

description:
Strain SNP
204875570083_R05C01


title: SNPs_22135

description:
Strain SNP
204875570083_R01C02


title: SNPs_22132

description:
Strain SNP
204875570083_R04C01


title: SNPs_22131

description:
Strain SNP
204875570083_R03C01


title: SNPs_22136

description:
Strain SNP
204875570083_R02C02


title: SNPs_21569

description:
Strain SNP
204875570017_R05C02

value: BALB/cJ


title: SNPs_22177

description:
Strain SNP
204875570035_R01C01


title: SNPs_22175

description:
Strain SNP
204875570034_R05C02

value: NOD/ShiLtJ


title: SNPs_22169

description:
Strain SNP
204875570034_R05C01

value: Female


title: SNPs_22174

description:
Strain SNP
204875570034_R04C02


title: SNPs_22172

description:
Strain SNP
204875570034_R02C02

value: FVB/NJ


title: SNPs_22168

description:
Strain SNP
204875570034_R04C01

value: Lab 1


title: SNPs_22170

description:
Strain SNP
204875570034_R06C01


title: SNPs_22173

description:
Strain SNP
204875570034_R03C02


title: SNPs_22176

description:
Strain SNP
204875570034_R06C02


title: SNPs_22139

description:
Strain SNP
204875570083_R05C02


title: SNPs_22166

description:
Strain SNP
204875570034_R02C01


title: SNPs_22171

description:
Strain SNP
204875570034_R01C02

value: NZB/BINJ


title: SNPs_22167

description:
Strain SNP
204875570034_R03C01


title: SNPs_22165

description:
Strain SNP
204875570034_R01C01

value: WSB/EiJ


title: SNPs_22158

description:
Strain SNP
204875570030_R06C01

value: MOLF/EiJ


title: SNPs_22163

description:
Strain SNP
204875570030_R05C02

value: Normal


title: SNPs_22164

description:
Strain SNP
204875570030_R06C02

value: Male


title: SNPs_22157

description:
Strain SNP
204875570030_R05C01

value: CAST/EiJ


title: SNPs_22161

description:
Strain SNP
204875570030_R03C02

value: PWK/PhJ


title: SNPs_22156

description:
Strain SNP
204875570030_R04C01


title: SNPs_22160

description:
Strain SNP
204875570030_R02C02


title: SNPs_22154

description:
Strain SNP
204875570030_R02C01


title: SNPs_22162

description:
Strain SNP
204875570030_R04C02


title: SNPs_22159

description:
Strain SNP
204875570030_R01C02


title: SNPs_22153

description:
Strain SNP
204875570030_R01C01


title: SNPs_22155

description:
Strain SNP
204875570030_R03C01


title: SNPs_22151

description:
Strain SNP
204875570013_R05C02


title: SNPs_22146

description:
Strain SNP
204875570013_R06C01


title: SNPs_22152

description:
Strain SNP
204875570013_R06C02


title: SNPs_22143

description:
Strain SNP
204875570013_R03C01


title: SNPs_22145

description:
Strain SNP
204875570013_R05C01

value: A/J


title: SNPs_22144

description:
Strain SNP
204875570013_R04C01


title: SNPs_22150

description:
Strain SNP
204875570013_R04C02


title: SNPs_22149

description:
Strain SNP
204875570013_R03C02


title: SNPs_22147

description:
Strain SNP
204875570013_R01C02


title: Blood_Deconvolution_22333

description:
Sorted Blood Panel
204879580012_R02C01

source_name: Neutrophils, Mouse DNA, Sorted Cells

value: Neutrophils


title: SNPs_22142

description:
Strain SNP
204875570013_R02C01


title: Blood_Deconvolution_22319

description:
Sorted Blood Panel
204879580010_R06C02


title: SNPs_22141

description:
Strain SNP
204875570013_R01C01

value: CBA/J


title: Blood_Deconvolution_22314

description:
Sorted Blood Panel
204879580010_R01C02


title: SNPs_22148

description:
Strain SNP
204875570013_R02C02


title: Blood_Deconvolution_22025

description:
Sorted Blood Panel
204879580044_R06C02

source_name: Monocytes, Mouse DNA, Sorted Cells

value: Monocytes EasySep


title: Blood_Deconvolution_22013

description:
Sorted Blood Panel
204879580039_R06C02


title: Blood_Deconvolution_22029

description:
Sorted Blood Panel
204879580039_R04C01

value: Mixed

value: Monocytes


title: Blood_Deconvolution_22017

description:
Sorted Blood Panel
204879580044_R04C01


title: Blood_Deconvolution_22021

description:
Sorted Blood Panel
204879580044_R02C02


title: Blood_Deconvolution_22033

description:
Sorted Blood Panel
204879580039_R02C02


title: Blood_Deconvolution_21721

description:
Sorted Blood Panel
204875570047_R05C01


title: Blood_Deconvolution_21749

description:
Sorted Blood Panel
204879580012_R01C02


title: Blood_Deconvolution_22324

description:
Sorted Blood Panel
204879580011_R05C01


title: Blood_Deconvolution_22312

description:
Sorted Blood Panel
204879580010_R05C01


title: Blood_Deconvolution_21731

description:
Sorted Blood Panel
204875570047_R01C01


title: Blood_Deconvolution_21753

description:
Sorted Blood Panel
204637490023_R02C02


title: Blood_Deconvolution_22334

description:
Sorted Blood Panel
204879580012_R03C01

source_name: MDSC, Mouse DNA, Sorted Cells

value: CD11b Gr1 MDSC


title: Blood_Deconvolution_22326

description:
Sorted Blood Panel
204879580011_R01C02

value: Female


title: Blood_Deconvolution_22327

description:
Sorted Blood Panel
204879580011_R02C02


title: Blood_Deconvolution_22320

description:
Sorted Blood Panel
204879580011_R01C01


title: Blood_Deconvolution_22019

description:
Sorted Blood Panel
204879580044_R06C01

source_name: Lymphocytes, Mouse DNA, Sorted Cells

value: CD8 T Cells EasySep


title: Blood_Deconvolution_22315

description:
Sorted Blood Panel
204879580010_R02C02

value: Lab 1


title: Blood_Deconvolution_22024

description:
Sorted Blood Panel
204879580044_R05C02

value: B Cells EasySep


title: Blood_Deconvolution_22015

description:
Sorted Blood Panel
204879580044_R02C01


title: Blood_Deconvolution_22020

description:
Sorted Blood Panel
204879580044_R01C02


title: Blood_Deconvolution_22014

description:
Sorted Blood Panel
204879580044_R01C01

value: CD4 T Cells EasySep


title: Blood_Deconvolution_22012

description:
Sorted Blood Panel
204879580039_R05C02


title: Blood_Deconvolution_22022

description:
Sorted Blood Panel
204879580044_R03C02


title: Blood_Deconvolution_22023

description:
Sorted Blood Panel
204879580044_R04C02


title: Blood_Deconvolution_22018

description:
Sorted Blood Panel
204879580044_R05C01


title: Blood_Deconvolution_21745

description:
Sorted Blood Panel
204637490023_R04C01


title: Blood_Deconvolution_22026

description:
Sorted Blood Panel
204879580039_R01C01

value: CD4 T Cells


title: Blood_Deconvolution_21748

description:
Sorted Blood Panel
204879580012_R06C01

value: B Cells

value: Normal


title: Blood_Deconvolution_22016

description:
Sorted Blood Panel
204879580044_R03C01

value: Male


title: Blood_Deconvolution_22011

description:
Sorted Blood Panel
204879580039_R04C02


title: Blood_Deconvolution_22030

description:
Sorted Blood Panel
204879580039_R05C01


title: Blood_Deconvolution_22331

description:
Sorted Blood Panel
204879580011_R06C02


title: Blood_Deconvolution_21746

description:
Sorted Blood Panel
204879580012_R04C01

value: CD8 T Cells


title: Blood_Deconvolution_22323

description:
Sorted Blood Panel
204879580011_R04C01


title: Blood_Deconvolution_21747

description:
Sorted Blood Panel
204879580012_R05C01


title: Blood_Deconvolution_22332

description:
Sorted Blood Panel
204879580012_R01C01

value: CD49b NK Cells


title: Blood_Deconvolution_22328

description:
Sorted Blood Panel
204879580011_R03C02


title: Blood_Deconvolution_22322

description:
Sorted Blood Panel
204879580011_R03C01


title: Blood_Deconvolution_22330

description:
Sorted Blood Panel
204879580011_R05C02


title: Blood_Deconvolution_22313

description:
Sorted Blood Panel
204879580010_R06C01


title: Blood_Deconvolution_22010

description:
Sorted Blood Panel
204879580039_R03C02


title: Blood_Deconvolution_22317

description:
Sorted Blood Panel
204879580010_R04C02


title: Blood_Deconvolution_22329

description:
Sorted Blood Panel
204879580011_R04C02


title: Blood_Deconvolution_22028

description:
Sorted Blood Panel
204879580039_R03C01


title: Blood_Deconvolution_22316

description:
Sorted Blood Panel
204879580010_R03C02


title: Blood_Deconvolution_22309

description:
Sorted Blood Panel
204879580010_R02C01


title: Blood_Deconvolution_21718

description:
Sorted Blood Panel
204875570047_R03C01

value: FVB/NJ


title: Blood_Deconvolution_22311

description:
Sorted Blood Panel
204879580010_R04C01


title: Blood_Deconvolution_22325

description:
Sorted Blood Panel
204879580011_R06C01


title: Blood_Deconvolution_22310

description:
Sorted Blood Panel
204879580010_R03C01


title: Blood_Deconvolution_21720

description:
Sorted Blood Panel
204875570047_R04C01


title: Blood_Deconvolution_21719

description:
Sorted Blood Panel
204875570047_R02C01


title: Blood_Deconvolution_21730

description:
Sorted Blood Panel
204875570010_R06C02


title: Blood_Deconvolution_21728

description:
Sorted Blood Panel
204875570010_R05C02


title: Blood_Deconvolution_21729

description:
Sorted Blood Panel
204875570010_R04C02


title: Blood_Deconvolution_22321

description:
Sorted Blood Panel
204879580011_R02C01


title: Blood_Deconvolution_22318

description:
Sorted Blood Panel
204879580010_R05C02


title: Blood_Deconvolution_21744

description:
Sorted Blood Panel
204637490023_R03C01


title: Blood_Deconvolution_21750

description:
Sorted Blood Panel
204637490023_R05C01


title: Blood_Deconvolution_21742

description:
Sorted Blood Panel
204637490023_R01C01


title: Blood_Deconvolution_21751

description:
Sorted Blood Panel
204637490023_R06C01


title: Other_Rodent_21800

description:
Rat Tissue
204637490011_R05C02

organism: Rattus norvegicus

source_name: Stomach, Rat DNA, Tissue

value: SAS Sprague Dawley Rat

value: Stomach


title: Blood_Deconvolution_21743

description:
Sorted Blood Panel
204637490023_R02C01

value: Mixed


title: Blood_Deconvolution_21752

description:
Sorted Blood Panel
204637490023_R01C02


title: Other_Rodent_21809

description:
Rat Tissue
204637490001_R05C01

source_name: Spleen, Rat DNA, Tissue

value: Spleen


title: Other_Rodent_21791

description:
Rat Tissue
204875570018_R04C02

source_name: Small Intestine, Rat DNA, Tissue

value: Small Intestine


title: Other_Rodent_21801

description:
Rat Tissue
204875570010_R04C01

value: Female


title: Other_Rodent_21777

description:
Rat Tissue
204875570018_R03C02


title: Other_Rodent_21772

description:
Rat Tissue
204637490011_R06C02


title: Other_Rodent_21808

description:
Rat Tissue
204637490001_R04C01

source_name: Kidney, Rat DNA, Tissue

value: Kidney


title: Other_Rodent_21805

description:
Rat Tissue
204637490001_R02C01

source_name: Heart, Rat DNA, Tissue

value: Lab 1

value: Heart


title: Other_Rodent_21807

description:
Rat Tissue
204637490001_R03C01

source_name: Liver, Rat DNA, Tissue

value: Liver


title: Other_Rodent_21810

description:
Rat Tissue
204875570010_R02C02

source_name: Fat, Rat DNA, Tissue

value: Fat


title: Other_Rodent_21794

description:
Rat Tissue
204875570018_R06C02

source_name: Colon, Rat DNA, Tissue

value: Colon


title: Other_Rodent_21797

description:
Rat Tissue
204875570010_R01C01


title: Rat_DNA_Titration_21754

description:
Rat DNA Titration
204637490001_R06C01

source_name: NA, EpigenDX Rat DNA, EpigenDX DNA

value: EpigenDX Rat DNA


title: Rat_DNA_Titration_21760

description:
Rat DNA Titration
204637490001_R06C02


title: Other_Rodent_21806

description:
Rat Tissue
204875570010_R01C02

source_name: Lung, Rat DNA, Tissue

value: Lung


title: Other_Rodent_21799

description:
Rat Tissue
204875570010_R03C01

source_name: Esophagus, Rat DNA, Tissue

value: Esophagus


title: Other_Rodent_21798

description:
Rat Tissue
204875570010_R02C01


title: Other_Rodent_21792

description:
Rat Tissue
204875570018_R05C02


title: Rat_DNA_Titration_21756

description:
Rat DNA Titration
204637490001_R02C02


title: PDX_21550

description:
PDX
204637490024_R06C01

organism:
Homo sapiens
Mus musculus

source_name: NA, PDX, Tissue

value: Male

value: Colorectal PDX


title: PDX_21553

description:
PDX
204637490024_R03C02


title: Other_Rodent_21811

description:
Rat Tissue
204875570010_R03C02

source_name: Muscle, Rat DNA, Tissue

value: SAS Sprague Dawley Rat

value: Muscle


title: Other_Rodent_21908

description:
Rat Tissue
204637490001_R01C01

source_name: Frontal Lobe Brain, Rat DNA, Tissue

value: Frontal Lobe Brain


title: PDX_21556

description:
PDX
204637490024_R06C02


title: Rat_DNA_Titration_21759

description:
Rat DNA Titration
204637490001_R05C02


title: Other_Rodent_21804

description:
Rat Tissue
204875570010_R06C01

source_name: Hind Brain, Rat DNA, Tissue

value: Hind Brain


title: Rat_DNA_Titration_21758

description:
Rat DNA Titration
204637490001_R04C02


title: Rat_DNA_Titration_21757

description:
Rat DNA Titration
204637490001_R03C02


title: Rat_DNA_Titration_21755

description:
Rat DNA Titration
204637490001_R01C02


title: Other_Rodent_21802

description:
Rat Tissue
204875570010_R05C01

source_name: Cecum, Rat DNA, Tissue

value: Cecum


title: PDX_21554

description:
PDX
204637490024_R04C02

value: Female


title: PDX_21551

description:
PDX
204637490024_R01C02


title: PDX_21561

description:
PDX
204637490011_R05C01


title: PDX_21555

description:
PDX
204637490024_R05C02


title: PDX_21552

description:
PDX
204637490024_R02C02


title: PDX_21562

description:
PDX
204637490011_R06C01


title: PDX_21560

description:
PDX
204637490011_R04C01


title: Intestinal_Tumor_Normal_21545

description:
Intestinal Tumor Biology
204875570087_R04C01

source_name: Small Intestine, Mouse DNA, Tissue

value: Small Intestine

value: Normal


title: PDX_21565

description:
PDX
204637490011_R03C02

value: Lab 1


title: PDX_21566

description:
PDX
204637490011_R04C02


title: PDX_21558

description:
PDX
204637490011_R02C01


title: PDX_21564

description:
PDX
204637490011_R02C02


title: PDX_21563

description:
PDX
204637490011_R01C02


title: PDX_21557

description:
PDX
204637490011_R01C01


title: Intestinal_Tumor_Normal_21535

description:
Intestinal Tumor Biology
204875570086_R01C01


title: Intestinal_Tumor_Normal_21766

description:
Intestinal Tumor Biology
204875570086_R01C02

value: Tumor


title: Intestinal_Tumor_Normal_21770

description:
Intestinal Tumor Biology
204875570086_R05C02


title: Intestinal_Tumor_Normal_21542

description:
Intestinal Tumor Biology
204875570087_R01C01


title: Intestinal_Tumor_Normal_20283

description:
Intestinal Tumor Biology
204875570085_R05C01


title: Intestinal_Tumor_Normal_20343

description:
Intestinal Tumor Biology
204875570085_R06C01


title: Intestinal_Tumor_Normal_21544

description:
Intestinal Tumor Biology
204875570087_R03C01


title: Intestinal_Tumor_Normal_21534

description:
Intestinal Tumor Biology
204875570085_R06C02


title: Intestinal_Tumor_Normal_21767

description:
Intestinal Tumor Biology
204875570086_R02C02


title: Intestinal_Tumor_Normal_20282

description:
Intestinal Tumor Biology
204875570085_R04C01


title: Intestinal_Tumor_Normal_20345

description:
Intestinal Tumor Biology
204875570085_R02C02


title: Intestinal_Tumor_Normal_20273

description:
Intestinal Tumor Biology
204875570085_R01C01


title: Intestinal_Tumor_Normal_20344

description:
Intestinal Tumor Biology
204875570085_R01C02


title: Intestinal_Tumor_Normal_20347

description:
Intestinal Tumor Biology
204875570085_R04C02


title: PDX_21559

description:
PDX
204637490011_R03C01


title: Intestinal_Tumor_Normal_20346

description:
Intestinal Tumor Biology
204875570085_R03C02


title: Intestinal_Tumor_Normal_20266

description:
Intestinal Tumor Biology
204875570082_R06C01


title: Intestinal_Tumor_Normal_21543

description:
Intestinal Tumor Biology
204875570087_R02C01


title: Intestinal_Tumor_Normal_20280

description:
Intestinal Tumor Biology
204875570085_R02C01


title: Intestinal_Tumor_Normal_20281

description:
Intestinal Tumor Biology
204875570085_R03C01


title: Intestinal_Tumor_Normal_20272

description:
Intestinal Tumor Biology
204875570082_R06C02


title: Intestinal_Tumor_Normal_20271

description:
Intestinal Tumor Biology
204875570082_R05C02


title: Intestinal_Tumor_Normal_20267

description:
Intestinal Tumor Biology
204875570082_R01C02


title: Intestinal_Tumor_Normal_20270

description:
Intestinal Tumor Biology
204875570082_R04C02


title: Intestinal_Tumor_Normal_20298

description:
Intestinal Tumor Biology
204875570082_R01C01


title: Intestinal_Tumor_Normal_20351

description:
Intestinal Tumor Biology
204875570082_R05C01


title: Intestinal_Tumor_Normal_20350

description:
Intestinal Tumor Biology
204875570082_R04C01


title: Intestinal_Tumor_Normal_20349

description:
Intestinal Tumor Biology
204875570082_R03C01


title: Intestinal_Tumor_Normal_20269

description:
Intestinal Tumor Biology
204875570082_R03C02


title: Intestinal_Tumor_Normal_20328

description:
Intestinal Tumor Biology
204875570078_R06C01


title: Intestinal_Tumor_Normal_21528

description:
Intestinal Tumor Biology
204875570078_R06C02


title: Intestinal_Tumor_Normal_20381

description:
Intestinal Tumor Biology
204875570078_R04C02


title: Intestinal_Tumor_Normal_20326

description:
Intestinal Tumor Biology
204875570078_R04C01


title: Intestinal_Tumor_Normal_20327

description:
Intestinal Tumor Biology
204875570078_R05C01


title: Intestinal_Tumor_Normal_20380

description:
Intestinal Tumor Biology
204875570078_R03C02


title: Intestinal_Tumor_Normal_20325

description:
Intestinal Tumor Biology
204875570078_R03C01


title: Intestinal_Tumor_Normal_20375

description:
Intestinal Tumor Biology
204875570078_R02C02


title: SNPs_22185

description:
Strain SNP
204875570035_R03C02

source_name: Liver, Mouse DNA, Tissue

value: Liver


title: Intestinal_Tumor_Normal_20299

description:
Intestinal Tumor Biology
204875570082_R02C01


title: Intestinal_Tumor_Normal_20268

description:
Intestinal Tumor Biology
204875570082_R02C02


title: Intestinal_Tumor_Normal_20286

description:
Intestinal Tumor Biology
204875570076_R05C01


title: Intestinal_Tumor_Normal_20287

description:
Intestinal Tumor Biology
204875570076_R06C01


title: Intestinal_Tumor_Normal_20374

description:
Intestinal Tumor Biology
204875570078_R01C02


title: Intestinal_Tumor_Normal_20297

description:
Intestinal Tumor Biology
204875570076_R06C02


title: Intestinal_Tumor_Normal_20323

description:
Intestinal Tumor Biology
204875570078_R01C01


title: Intestinal_Tumor_Normal_20296

description:
Intestinal Tumor Biology
204875570076_R05C02


title: Intestinal_Tumor_Normal_20295

description:
Intestinal Tumor Biology
204875570076_R04C02


title: Intestinal_Tumor_Normal_20285

description:
Intestinal Tumor Biology
204875570076_R04C01


title: Intestinal_Tumor_Normal_20288

description:
Intestinal Tumor Biology
204875570076_R01C02


title: Intestinal_Tumor_Normal_20284

description:
Intestinal Tumor Biology
204875570076_R03C01


title: Intestinal_Tumor_Normal_20289

description:
Intestinal Tumor Biology
204875570076_R02C02


title: Intestinal_Tumor_Normal_20342

description:
Intestinal Tumor Biology
204875570076_R02C01


title: Intestinal_Tumor_Normal_20340

description:
Intestinal Tumor Biology
204875570075_R06C02


title: Intestinal_Tumor_Normal_20353

description:
Intestinal Tumor Biology
204875570075_R06C01


title: Intestinal_Tumor_Normal_21527

description:
Intestinal Tumor Biology
204875570078_R05C02


title: Intestinal_Tumor_Normal_20339

description:
Intestinal Tumor Biology
204875570075_R05C02


title: Intestinal_Tumor_Normal_20352

description:
Intestinal Tumor Biology
204875570075_R05C01


title: Intestinal_Tumor_Normal_20338

description:
Intestinal Tumor Biology
204875570075_R04C02


title: Intestinal_Tumor_Normal_20324

description:
Intestinal Tumor Biology
204875570078_R02C01


title: Intestinal_Tumor_Normal_20337

description:
Intestinal Tumor Biology
204875570075_R03C02


title: Intestinal_Tumor_Normal_20294

description:
Intestinal Tumor Biology
204875570076_R03C02


title: Intestinal_Tumor_Normal_20335

description:
Intestinal Tumor Biology
204875570075_R01C02


title: Intestinal_Tumor_Normal_20341

description:
Intestinal Tumor Biology
204875570076_R01C01


title: Intestinal_Tumor_Normal_20316

description:
Intestinal Tumor Biology
204875570073_R06C02


title: Intestinal_Tumor_Normal_21517

description:
Intestinal Tumor Biology
204875570073_R06C01


title: Intestinal_Tumor_Normal_20315

description:
Intestinal Tumor Biology
204875570073_R05C02


title: Intestinal_Tumor_Normal_21516

description:
Intestinal Tumor Biology
204875570073_R05C01


title: Intestinal_Tumor_Normal_21842

description:
Intestinal Tumor Biology
204875570075_R01C01


title: Intestinal_Tumor_Normal_20313

description:
Intestinal Tumor Biology
204875570073_R03C02


title: Intestinal_Tumor_Normal_21824

description:
Intestinal Tumor Biology
204875570073_R03C01


title: Intestinal_Tumor_Normal_21825

description:
Intestinal Tumor Biology
204875570073_R04C01


title: Intestinal_Tumor_Normal_21823

description:
Intestinal Tumor Biology
204875570073_R02C01


title: Intestinal_Tumor_Normal_21761

description:
Intestinal Tumor Biology
204875570071_R05C02


title: Intestinal_Tumor_Normal_21763

description:
Intestinal Tumor Biology
204875570071_R06C02


title: Intestinal_Tumor_Normal_21514

description:
Intestinal Tumor Biology
204875570071_R04C02


title: Intestinal_Tumor_Normal_21822

description:
Intestinal Tumor Biology
204875570073_R01C01


title: Intestinal_Tumor_Normal_21513

description:
Intestinal Tumor Biology
204875570071_R03C02


title: Intestinal_Tumor_Normal_21521

description:
Intestinal Tumor Biology
204875570070_R06C01


title: Intestinal_Tumor_Normal_21826

description:
Intestinal Tumor Biology
204875570070_R06C02


title: Intestinal_Tumor_Normal_21526

description:
Intestinal Tumor Biology
204875570070_R05C02


title: Intestinal_Tumor_Normal_20336

description:
Intestinal Tumor Biology
204875570075_R02C02


title: Intestinal_Tumor_Normal_21843

description:
Intestinal Tumor Biology
204875570075_R02C01


title: Intestinal_Tumor_Normal_21520

description:
Intestinal Tumor Biology
204875570070_R05C01


title: Intestinal_Tumor_Normal_21525

description:
Intestinal Tumor Biology
204875570070_R04C02


title: Intestinal_Tumor_Normal_21844

description:
Intestinal Tumor Biology
204875570075_R03C01


title: Intestinal_Tumor_Normal_21524

description:
Intestinal Tumor Biology
204875570070_R03C02


title: Intestinal_Tumor_Normal_20369

description:
Intestinal Tumor Biology
204875570070_R04C01


title: Intestinal_Tumor_Normal_20314

description:
Intestinal Tumor Biology
204875570073_R04C02


title: Intestinal_Tumor_Normal_20368

description:
Intestinal Tumor Biology
204875570070_R03C01


title: Intestinal_Tumor_Normal_21523

description:
Intestinal Tumor Biology
204875570070_R02C02


title: Intestinal_Tumor_Normal_21827

description:
Intestinal Tumor Biology
204875570070_R01C01


title: Intestinal_Tumor_Normal_20359

description:
Intestinal Tumor Biology
204875570069_R06C02


title: Intestinal_Tumor_Normal_21522

description:
Intestinal Tumor Biology
204875570070_R01C02


title: Intestinal_Tumor_Normal_20367

description:
Intestinal Tumor Biology
204875570070_R02C01


title: Intestinal_Tumor_Normal_21532

description:
Intestinal Tumor Biology
204875570069_R04C01


title: Intestinal_Tumor_Normal_20360

description:
Intestinal Tumor Biology
204875570069_R06C01


title: Intestinal_Tumor_Normal_20358

description:
Intestinal Tumor Biology
204875570069_R05C02


title: Intestinal_Tumor_Normal_21530

description:
Intestinal Tumor Biology
204875570069_R02C01


title: Intestinal_Tumor_Normal_20361

description:
Intestinal Tumor Biology
204875570069_R01C02


title: Intestinal_Tumor_Normal_20363

description:
Intestinal Tumor Biology
204875570069_R03C02


title: Intestinal_Tumor_Normal_21533

description:
Intestinal Tumor Biology
204875570069_R05C01


title: Intestinal_Tumor_Normal_21835

description:
Intestinal Tumor Biology
204875570067_R06C01


title: Intestinal_Tumor_Normal_21531

description:
Intestinal Tumor Biology
204875570069_R03C01


title: Intestinal_Tumor_Normal_21841

description:
Intestinal Tumor Biology
204875570067_R06C02


title: Intestinal_Tumor_Normal_20362

description:
Intestinal Tumor Biology
204875570069_R02C02


title: Intestinal_Tumor_Normal_20365

description:
Intestinal Tumor Biology
204875570069_R04C02


title: Intestinal_Tumor_Normal_21834

description:
Intestinal Tumor Biology
204875570067_R05C01


title: Intestinal_Tumor_Normal_21839

description:
Intestinal Tumor Biology
204875570067_R04C02


title: Intestinal_Tumor_Normal_21833

description:
Intestinal Tumor Biology
204875570067_R04C01


title: Intestinal_Tumor_Normal_21838

description:
Intestinal Tumor Biology
204875570067_R03C02


title: Intestinal_Tumor_Normal_21832

description:
Intestinal Tumor Biology
204875570067_R03C01


title: Intestinal_Tumor_Normal_21837

description:
Intestinal Tumor Biology
204875570067_R02C02


title: Intestinal_Tumor_Normal_21840

description:
Intestinal Tumor Biology
204875570067_R05C02


title: Intestinal_Tumor_Normal_21529

description:
Intestinal Tumor Biology
204875570069_R01C01


title: Intestinal_Tumor_Normal_21836

description:
Intestinal Tumor Biology
204875570067_R01C02


title: Intestinal_Tumor_Normal_20293

description:
Intestinal Tumor Biology
204875570059_R04C02


title: Intestinal_Tumor_Normal_20301

description:
Intestinal Tumor Biology
204875570059_R02C01


title: Intestinal_Tumor_Normal_21831

description:
Intestinal Tumor Biology
204875570067_R02C01


title: Intestinal_Tumor_Normal_20291

description:
Intestinal Tumor Biology
204875570059_R02C02


title: Intestinal_Tumor_Normal_20355

description:
Intestinal Tumor Biology
204875570059_R06C02


title: Intestinal_Tumor_Normal_20302

description:
Intestinal Tumor Biology
204875570059_R03C01


title: Intestinal_Tumor_Normal_20304

description:
Intestinal Tumor Biology
204875570059_R05C01


title: Intestinal_Tumor_Normal_21830

description:
Intestinal Tumor Biology
204875570067_R01C01


title: Intestinal_Tumor_Normal_20306

description:
Intestinal Tumor Biology
204875570055_R06C01


title: Intestinal_Tumor_Normal_20309

description:
Intestinal Tumor Biology
204875570055_R03C02


title: Intestinal_Tumor_Normal_20308

description:
Intestinal Tumor Biology
204875570055_R02C02


title: Intestinal_Tumor_Normal_20373

description:
Intestinal Tumor Biology
204875570055_R03C01


title: Intestinal_Tumor_Normal_20300

description:
Intestinal Tumor Biology
204875570059_R01C01


title: Intestinal_Tumor_Normal_20377

description:
Intestinal Tumor Biology
204875570055_R05C01


title: Intestinal_Tumor_Normal_20292

description:
Intestinal Tumor Biology
204875570059_R03C02


title: Intestinal_Tumor_Normal_20305

description:
Intestinal Tumor Biology
204875570059_R06C01


title: Intestinal_Tumor_Normal_20311

description:
Intestinal Tumor Biology
204875570055_R05C02


title: Intestinal_Tumor_Normal_20290

description:
Intestinal Tumor Biology
204875570059_R01C02


title: Intestinal_Tumor_Normal_20303

description:
Intestinal Tumor Biology
204875570059_R04C01


title: Intestinal_Tumor_Normal_20376

description:
Intestinal Tumor Biology
204875570055_R04C01


title: Intestinal_Tumor_Normal_20372

description:
Intestinal Tumor Biology
204875570055_R02C01


title: Intestinal_Tumor_Normal_20310

description:
Intestinal Tumor Biology
204875570055_R04C02


title: Intestinal_Tumor_Normal_20307

description:
Intestinal Tumor Biology
204875570055_R01C02


title: Intestinal_Tumor_Normal_20371

description:
Intestinal Tumor Biology
204875570055_R01C01


title: Intestinal_Tumor_Normal_20312

description:
Intestinal Tumor Biology
204875570055_R06C02


title: Intestinal_Tumor_Normal_21814

description:
Intestinal Tumor Biology
204875570051_R02C02


title: Intestinal_Tumor_Normal_21813

description:
Intestinal Tumor Biology
204875570045_R03C02


title: Intestinal_Tumor_Normal_21507

description:
Intestinal Tumor Biology
204875570004_R04C01


title: Intestinal_Tumor_Normal_21816

description:
Intestinal Tumor Biology
204875570028_R01C01


title: Intestinal_Tumor_Normal_21506

description:
Intestinal Tumor Biology
204875570004_R03C01


title: Intestinal_Tumor_Normal_21504

description:
Intestinal Tumor Biology
204875570004_R01C01


title: Intestinal_Tumor_Normal_21815

description:
Intestinal Tumor Biology
204875570022_R05C01


title: Intestinal_Tumor_Normal_21821

description:
Intestinal Tumor Biology
204875570004_R06C02


title: Intestinal_Tumor_Normal_21817

description:
Intestinal Tumor Biology
204875570014_R05C01


title: Intestinal_Tumor_Normal_21505

description:
Intestinal Tumor Biology
204875570004_R02C01


title: Intestinal_Tumor_Normal_21812

description:
Intestinal Tumor Biology
204875570008_R05C02


title: Intestinal_Tumor_Normal_21511

description:
Intestinal Tumor Biology
204875570004_R02C02


title: Intestinal_Tumor_Normal_21820

description:
Intestinal Tumor Biology
204875570004_R05C02


title: Intestinal_Tumor_Normal_21509

description:
Intestinal Tumor Biology
204875570004_R06C01


title: Intestinal_Tumor_Normal_21828

description:
Intestinal Tumor Biology
204875570001_R05C02


title: Intestinal_Tumor_Normal_21508

description:
Intestinal Tumor Biology
204875570004_R05C01


title: Intestinal_Tumor_Normal_21510

description:
Intestinal Tumor Biology
204875570004_R01C02


title: Intestinal_Tumor_Normal_21851

description:
Intestinal Tumor Biology
204875570001_R06C01


title: Intestinal_Tumor_Normal_21850

description:
Intestinal Tumor Biology
204875570001_R05C01


title: Intestinal_Tumor_Normal_20348

description:
Intestinal Tumor Biology
204875570085_R05C02


title: Intestinal_Tumor_Normal_21848

description:
Intestinal Tumor Biology
204875570001_R03C01


title: Intestinal_Tumor_Normal_20370

description:
Intestinal Tumor Biology
204875570001_R04C02


title: Intestinal_Tumor_Normal_21849

description:
Intestinal Tumor Biology
204875570001_R04C01


title: Intestinal_Tumor_Normal_20366

description:
Intestinal Tumor Biology
204875570001_R03C02


title: Intestinal_Tumor_Normal_21853

description:
Intestinal Tumor Biology
204875570001_R02C02


title: Intestinal_Tumor_Normal_21818

description:
Intestinal Tumor Biology
204875570004_R03C02


title: Intestinal_Tumor_Normal_21847

description:
Intestinal Tumor Biology
204875570001_R02C01


title: Intestinal_Tumor_Normal_20378

description:
Intestinal Tumor Biology
204637490015_R05C01


title: Intestinal_Tumor_Normal_20265

description:
Intestinal Tumor Biology
204637490015_R02C01


title: Intestinal_Tumor_Normal_20356

description:
Intestinal Tumor Biology
204637490015_R03C01


title: Intestinal_Tumor_Normal_20264

description:
Intestinal Tumor Biology
204637490015_R01C01


title: Intestinal_Tumor_Normal_20357

description:
Intestinal Tumor Biology
204637490015_R04C01


title: Intestinal_Tumor_Normal_21762

description:
Intestinal Tumor Biology
204637490014_R01C02


title: Intestinal_Tumor_Normal_21852

description:
Intestinal Tumor Biology
204875570001_R01C02


title: Intestinal_Tumor_Normal_22453

description:
Intestinal Tumor Biology
204879580045_R06C01

source_name: Colon, Mouse DNA, Tissue

value: Mixed

value: Colon


title: Intestinal_Tumor_Normal_22452

description:
Intestinal Tumor Biology
204879580045_R05C01


title: Intestinal_Tumor_Normal_20379

description:
Intestinal Tumor Biology
204637490015_R06C01


title: Intestinal_Tumor_Normal_22447

description:
Intestinal Tumor Biology
204879580042_R06C02


title: Intestinal_Tumor_Normal_21829

description:
Intestinal Tumor Biology
204875570001_R06C02


title: Intestinal_Tumor_Normal_21846

description:
Intestinal Tumor Biology
204875570001_R01C01


title: Blood_Deconvolution_22032

description:
Sorted Blood Panel
204879580039_R01C02

source_name: Lymphocytes, Mouse DNA, Sorted Cells

value: B Cells


title: Intestinal_Tumor_Normal_22459

description:
Intestinal Tumor Biology
204879580045_R06C02


title: Intestinal_Tumor_Normal_22458

description:
Intestinal Tumor Biology
204879580045_R05C02


title: Intestinal_Tumor_Normal_22456

description:
Intestinal Tumor Biology
204879580045_R03C02


title: Intestinal_Tumor_Normal_21541

description:
Intestinal Tumor Biology
204875570086_R06C01


title: Intestinal_Tumor_Normal_21549

description:
Intestinal Tumor Biology
204875570087_R01C02


title: Intestinal_Tumor_Normal_21539

description:
Intestinal Tumor Biology
204875570086_R04C01


title: Intestinal_Tumor_Normal_21540

description:
Intestinal Tumor Biology
204875570086_R05C01


title: Intestinal_Tumor_Normal_22461

description:
Intestinal Tumor Biology
204879580041_R02C01


title: Intestinal_Tumor_Normal_22443

description:
Intestinal Tumor Biology
204879580042_R02C02


title: Intestinal_Tumor_Normal_22450

description:
Intestinal Tumor Biology
204879580045_R03C01


title: Intestinal_Tumor_Normal_22449

description:
Intestinal Tumor Biology
204879580045_R02C01


title: Intestinal_Tumor_Normal_21536

description:
Intestinal Tumor Biology
204875570086_R02C01


title: Intestinal_Tumor_Normal_22446

description:
Intestinal Tumor Biology
204879580042_R05C02


title: Intestinal_Tumor_Normal_22444

description:
Intestinal Tumor Biology
204879580042_R03C02


title: Tamoxifen_Injection_21953

description:
Intestinal Tumor Biology
204875570024_R02C01


title: Tamoxifen_Injection_21967

description:
Intestinal Tumor Biology
204875570018_R04C01


title: Intestinal_Tumor_Normal_22455

description:
Intestinal Tumor Biology
204879580045_R02C02


title: Tamoxifen_Injection_21971

description:
Intestinal Tumor Biology
204875570018_R02C02


title: Tamoxifen_Injection_21964

description:
Intestinal Tumor Biology
204875570018_R01C01


title: Intestinal_Tumor_Normal_21538

description:
Intestinal Tumor Biology
204637490014_R06C02


title: Intestinal_Tumor_Normal_21845

description:
Intestinal Tumor Biology
204875570075_R04C01


title: Intestinal_Tumor_Normal_20354

description:
Intestinal Tumor Biology
204875570059_R05C02


title: Intestinal_Tumor_Normal_21537

description:
Intestinal Tumor Biology
204875570086_R03C01


title: Tamoxifen_Injection_21956

description:
Intestinal Tumor Biology
204875570024_R05C01


title: Tamoxifen_Injection_21961

description:
Intestinal Tumor Biology
204875570024_R04C02


title: Tamoxifen_Injection_21969

description:
Intestinal Tumor Biology
204875570018_R06C01


title: Intestinal_Tumor_Normal_22445

description:
Intestinal Tumor Biology
204879580042_R04C02

source_name: Cecum, Mouse DNA, Tissue


title: Intestinal_Tumor_Normal_22448

description:
Intestinal Tumor Biology
204879580045_R01C01


title: Intestinal_Tumor_Normal_22454

description:
Intestinal Tumor Biology
204879580045_R01C02


title: Tamoxifen_Injection_21958

description:
Intestinal Tumor Biology
204875570024_R01C02


title: Intestinal_Tumor_Normal_22460

description:
Intestinal Tumor Biology
204879580041_R01C01


title: Tamoxifen_Injection_21962

description:
Intestinal Tumor Biology
204875570024_R05C02


title: Intestinal_Tumor_Normal_21548

description:
Intestinal Tumor Biology
204637490014_R05C02


title: Tamoxifen_Injection_21957

description:
Intestinal Tumor Biology
204875570024_R06C01


title: Intestinal_Tumor_Normal_21765

description:
Intestinal Tumor Biology
204637490014_R04C02


title: Intestinal_Tumor_Normal_21764

description:
Intestinal Tumor Biology
204637490014_R03C02


title: Tamoxifen_Injection_21954

description:
Intestinal Tumor Biology
204875570024_R03C01


title: Intestinal_Tumor_Normal_22457

description:
Intestinal Tumor Biology
204879580045_R04C02


title: Tamoxifen_Injection_21968

description:
Intestinal Tumor Biology
204875570018_R05C01


title: Intestinal_Tumor_Normal_22451

description:
Intestinal Tumor Biology
204879580045_R04C01


title: Tamoxifen_Injection_21965

description:
Intestinal Tumor Biology
204875570018_R02C01


title: Intestinal_Tumor_Normal_22442

description:
Intestinal Tumor Biology
204879580042_R01C02


title: Input_Quantity_Titration_20374_E10

description:
Input Quantity Titration
204879580007_R05C01


title: Tamoxifen_Injection_21963

description:
Intestinal Tumor Biology
204875570024_R06C02


title: Tamoxifen_Injection_21960

description:
Intestinal Tumor Biology
204875570024_R03C02


title: Input_Quantity_Titration_20374_B10

description:
Input Quantity Titration
204879580007_R02C01


title: Tamoxifen_Injection_21959

description:
Intestinal Tumor Biology
204875570024_R02C02


title: Tamoxifen_Injection_21955

description:
Intestinal Tumor Biology
204875570024_R04C01


title: Tamoxifen_Injection_21952

description:
Intestinal Tumor Biology
204875570024_R01C01


title: Input_Quantity_Titration_20374_G9

description:
Input Quantity Titration
204879580002_R05C02


title: Intestinal_Tumor_Normal_21819

description:
Intestinal Tumor Biology
204875570004_R04C02


title: Tamoxifen_Injection_21970

description:
Intestinal Tumor Biology
204875570018_R01C02


title: Tamoxifen_Injection_21966

description:
Intestinal Tumor Biology
204875570018_R03C01


title: Input_Quantity_Titration_20009_C8

description:
Input Quantity Titration
204637490023_R05C02

source_name: NA, Cell Line DNA, Cell Line


title: Human_DNA_Titration_22471

description:
Human-mouse Titration
204879580041_R06C02

source_name: NA, Mouse Human DNA, Tissue

value: 5% Human Blood, 95% Mouse Fat


title: Input_Quantity_Titration_20374_D10

description:
Input Quantity Titration
204879580007_R04C01

value: Male


title: Input_Quantity_Titration_20374_C10

description:
Input Quantity Titration
204879580007_R03C01


title: Input_Quantity_Titration_20374_H9

description:
Input Quantity Titration
204879580002_R06C02


title: Input_Quantity_Titration_20374_F9

description:
Input Quantity Titration
204879580002_R04C02


title: Input_Quantity_Titration_20374_A10

description:
Input Quantity Titration
204879580007_R01C01


title: Input_Quantity_Titration_20009_G2

description:
Input Quantity Titration
204637490024_R03C01


title: Input_Quantity_Titration_20009_E2

description:
Input Quantity Titration
204637490024_R01C01


title: Input_Quantity_Titration_20009_D8

description:
Input Quantity Titration
204637490023_R06C02


title: Input_Quantity_Titration_20009_B8

description:
Input Quantity Titration
204637490023_R04C02


title: Human_DNA_Titration_22470

description:
Human-mouse Titration
204879580041_R05C02

value: 10% Human Blood, 90% Mouse Fat


title: Human_DNA_Titration_22465

description:
Human-mouse Titration
204879580041_R06C01

value: 85% Human Blood, 15% Mouse Fat


title: Human_DNA_Titration_22466

description:
Human-mouse Titration
204879580041_R01C02

value: 75% Human Blood, 25% Mouse Fat


title: Input_Quantity_Titration_20009_F2

description:
Input Quantity Titration
204637490024_R02C01


title: Human_DNA_Titration_22477

description:
Human-mouse Titration
204879580033_R06C01

value: 25% Human Blood, 75% Mouse Spleen


title: Human_DNA_Titration_22469

description:
Human-mouse Titration
204879580041_R04C02

value: 15% Human Blood, 85% Mouse Fat


title: Human_DNA_Titration_22464

description:
Human-mouse Titration
204879580041_R05C01

value: 90% Human Blood, 10% Mouse Fat


title: Human_DNA_Titration_22476

description:
Human-mouse Titration
204879580033_R05C01

value: Female

value: 50% Human Blood, 50% Mouse Spleen


title: Human_DNA_Titration_22475

description:
Human-mouse Titration
204879580033_R04C01

value: 75% Human Blood, 25% Mouse Spleen


title: Human_DNA_Titration_22463

description:
Human-mouse Titration
204879580041_R04C01

value: Lab 1

value: 95% Human Blood, 5% Mouse Fat


title: Human_DNA_Titration_22482

description:
Human-mouse Titration
204879580033_R05C02

source_name: Spleen, Mouse DNA, Tissue

value: Spleen


title: Input_Quantity_Titration_20009_H2

description:
Input Quantity Titration
204637490024_R04C01


title: Input_Quantity_Titration_20009_A8

description:
Input Quantity Titration
204637490023_R03C02


title: Human_DNA_Titration_22474

description:
Human-mouse Titration
204879580033_R03C01

value: 85% Human Blood, 15% Mouse Spleen


title: Human_DNA_Titration_22479

description:
Human-mouse Titration
204879580033_R02C02

value: 10% Human Blood, 90% Mouse Spleen


title: Human_DNA_Titration_22480

description:
Human-mouse Titration
204879580033_R03C02

value: 5% Human Blood, 95% Mouse Spleen


title: Human_DNA_Titration_22468

description:
Human-mouse Titration
204879580041_R03C02

value: 25% Human Blood, 75% Mouse Fat


title: Human_DNA_Titration_22478

description:
Human-mouse Titration
204879580033_R01C02

value: 15% Human Blood, 85% Mouse Spleen


title: Human_DNA_Titration_22462

description:
Human-mouse Titration
204879580041_R03C01

source_name: NA, Human DNA, Tissue

value: 100% Human Blood


title: Human_DNA_Titration_22472

description:
Human-mouse Titration
204879580033_R01C01

value: 95% Human Blood, 5% Mouse Spleen


title: Human_DNA_Titration_22467

description:
Human-mouse Titration
204879580041_R02C02

value: 50% Human Blood, 50% Mouse Fat


title: FFPE_vs_Frozen_22009

description:
FFPE samples
204875570007_R06C02

source_name: Stomach, Mouse DNA, Tissue

value: Stomach


title: Human_DNA_Titration_22481

description:
Human-mouse Titration
204879580033_R04C02

source_name: Fat, Mouse DNA, Tissue

value: Fat


title: FFPE_vs_Frozen_22008

description:
FFPE samples
204875570007_R04C01


title: FFPE_vs_Frozen_22007

description:
FFPE samples
204875570007_R03C01


title: Other_Rodent_22213

description:
Hamster CHO
204875570056_R03C01

organism: Cricetulus griseus

source_name: NA, Hamster DNA, Cell Line

value: CHO


title: FFPE_vs_Frozen_21995

description:
FFPE samples
204875570002_R01C02

value: Male


title: FFPE_vs_Frozen_22005

description:
FFPE samples
204875570007_R02C01

value: Female


title: FFPE_vs_Frozen_22004

description:
FFPE samples
204875570007_R01C01


title: FFPE_vs_Frozen_21997

description:
FFPE samples
204875570007_R02C02


title: FFPE_vs_Frozen_22006

description:
FFPE samples
204875570007_R05C02


title: FFPE_vs_Frozen_21996

description:
FFPE samples
204875570002_R02C02


title: FFPE_vs_Frozen_21994

description:
FFPE samples
204875570007_R01C02


title: Human_DNA_Titration_22473

description:
Human-mouse Titration
204879580033_R02C01

value: 90% Human Blood, 10% Mouse Spleen


title: FFPE_vs_Frozen_22000

description:
FFPE samples
204875570007_R03C02

value: Lab 1

value: Liver


title: FFPE_vs_Frozen_21993

description:
FFPE samples
204875570002_R06C01

value: Spleen


title: FFPE_vs_Frozen_21999

description:
FFPE samples
204875570002_R04C02


title: FFPE_vs_Frozen_21998

description:
FFPE samples
204875570002_R03C02


title: FFPE_vs_Frozen_22001

description:
FFPE samples
204875570002_R05C02

source_name: Heart, Mouse DNA, Tissue

value: Heart


title: FFPE_vs_Frozen_22003

description:
FFPE samples
204875570007_R04C02


title: FFPE_vs_Frozen_21986

description:
FFPE samples
204875570002_R01C01


title: FFPE_vs_Frozen_22002

description:
FFPE samples
204875570002_R06C02


title: FFPE_vs_Frozen_21990

description:
FFPE samples
204875570002_R04C01


title: Dnmt1_Manipulation_21228

description:
Dnmt1 Manipulation
204875570036_R02C02

source_name: Testis, Mouse DNA, Tissue

value: Mixed

value: Testis


title: FFPE_vs_Frozen_21988

description:
FFPE samples
204875570007_R05C01


title: FFPE_vs_Frozen_21987

description:
FFPE samples
204875570002_R02C01


title: Dnmt1_Manipulation_21287

description:
Dnmt1 Manipulation
204875570062_R06C01


title: Dnmt1_Manipulation_21284

description:
Dnmt1 Manipulation
204875570062_R04C01


title: Dnmt1_Manipulation_21288

description:
Dnmt1 Manipulation
204875570062_R01C02


title: Dnmt1_Manipulation_21312

description:
Dnmt1 Manipulation
204875570065_R06C02


title: FFPE_vs_Frozen_21991

description:
FFPE samples
204875570007_R06C01


title: Dnmt1_Manipulation_21620

description:
Dnmt1 Manipulation
204875570053_R01C02


title: FFPE_vs_Frozen_21992

description:
FFPE samples
204875570002_R05C01


title: FFPE_vs_Frozen_21989

description:
FFPE samples
204875570002_R03C01


title: Dnmt1_Manipulation_21619

description:
Dnmt1 Manipulation
204875570053_R06C01


title: Dnmt1_Manipulation_21259

description:
Dnmt1 Manipulation
204875570036_R04C02


title: Dnmt1_Manipulation_21676

description:
Dnmt1 Manipulation
204875570044_R03C01


title: Dnmt1_Manipulation_21315

description:
Dnmt1 Manipulation
204875570020_R03C01


title: Dnmt1_Manipulation_21648

description:
Dnmt1 Manipulation
204875570019_R06C02


title: Dnmt1_Manipulation_21675

description:
Dnmt1 Manipulation
204875570044_R02C01


title: Dnmt1_Manipulation_21260

description:
Dnmt1 Manipulation
204875570036_R05C02


title: Dnmt1_Manipulation_21203

description:
Dnmt1 Manipulation
204875570033_R02C01


title: Dnmt1_Manipulation_21647

description:
Dnmt1 Manipulation
204875570019_R05C02


title: Dnmt1_Manipulation_21316

description:
Dnmt1 Manipulation
204875570020_R04C01


title: Dnmt1_Manipulation_21204

description:
Dnmt1 Manipulation
204875570033_R03C01


title: Dnmt1_Manipulation_21308

description:
Dnmt1 Manipulation
204875570065_R02C02


title: Dnmt1_Manipulation_21696

description:
Dnmt1 Manipulation
204875570032_R04C01


title: Dnmt1_Manipulation_21280

description:
Dnmt1 Manipulation
204875570058_R06C02


title: Dnmt1_Manipulation_21640

description:
Dnmt1 Manipulation
204875570063_R02C02


title: Dnmt1_Manipulation_21336

description:
Dnmt1 Manipulation
204875570019_R05C01


title: Dnmt1_Manipulation_21668

description:
Dnmt1 Manipulation
204875570043_R03C02


title: Dnmt1_Manipulation_21289

description:
Dnmt1 Manipulation
204875570062_R02C02

value: Small Intestine

value: Normal


title: Dnmt1_Manipulation_21224

description:
Dnmt1 Manipulation
204875570036_R04C01


title: Dnmt1_Manipulation_21298

description:
Dnmt1 Manipulation
204875570062_R04C02


title: Dnmt1_Manipulation_21291

description:
Dnmt1 Manipulation
204875570062_R03C02


title: Dnmt1_Manipulation_21270

description:
Dnmt1 Manipulation
204875570058_R02C01


title: Dnmt1_Manipulation_21623

description:
Dnmt1 Manipulation
204875570053_R03C02


title: Dnmt1_Manipulation_21262

description:
Dnmt1 Manipulation
204875570058_R01C01


title: Dnmt1_Manipulation_21621

description:
Dnmt1 Manipulation
204875570053_R02C02


title: Dnmt1_Manipulation_21686

description:
Dnmt1 Manipulation
204875570044_R06C01


title: Dnmt1_Manipulation_21630

description:
Dnmt1 Manipulation
204875570053_R04C02


title: Dnmt1_Manipulation_21679

description:
Dnmt1 Manipulation
204875570044_R05C01


title: Dnmt1_Manipulation_21677

description:
Dnmt1 Manipulation
204875570044_R04C01


title: Dnmt1_Manipulation_21214

description:
Dnmt1 Manipulation
204875570033_R06C01


title: Dnmt1_Manipulation_21658

description:
Dnmt1 Manipulation
204875570025_R03C01


title: Dnmt1_Manipulation_21261

description:
Dnmt1 Manipulation
204875570036_R06C02


title: Dnmt1_Manipulation_21651

description:
Dnmt1 Manipulation
204875570025_R02C01


title: Dnmt1_Manipulation_21205

description:
Dnmt1 Manipulation
204875570033_R04C01


title: Dnmt1_Manipulation_21207

description:
Dnmt1 Manipulation
204875570033_R05C01


title: Dnmt1_Manipulation_21649

description:
Dnmt1 Manipulation
204875570025_R01C01


title: Dnmt1_Manipulation_21319

description:
Dnmt1 Manipulation
204875570020_R06C01


title: Dnmt1_Manipulation_21326

description:
Dnmt1 Manipulation
204875570020_R01C02


title: Dnmt1_Manipulation_21644

description:
Dnmt1 Manipulation
204875570063_R06C02

source_name: Ovary, Mouse DNA, Tissue

value: Ovary


title: Dnmt1_Manipulation_21700

description:
Dnmt1 Manipulation
204875570032_R02C02


title: ES_Cells_21711

description:
Dnmt1 Manipulation
204637490012_R05C02

source_name: NA, ES Cells, Cell Line

value: J1 S/S Clone B


title: ES_Cells_21714

description:
Dnmt1 Manipulation
204637490014_R02C01

value: J1 Passage 17


title: ES_Cells_21710

description:
Dnmt1 Manipulation
204637490012_R04C02


title: ES_Cells_21717

description:
Dnmt1 Manipulation
204637490014_R05C01


title: ES_Cells_21704

description:
Dnmt1 Manipulation
204637490012_R04C01

value: J1 N/N Clone 10


title: ES_Cells_21702

description:
Dnmt1 Manipulation
204637490012_R02C01

value: J1 N/N Clone 52


title: ES_Cells_21708

description:
Dnmt1 Manipulation
204637490012_R02C02