title: Lineage_wATAC-p7C8

description:
lineage_profiles_wATAC.txt
C8-TARGp7_AATTGCCTAC_S416


title: Lineage_wATAC-p7C3

status: Public on May 12 2022

type: SRA

city: Seattle

first: Anna

last: Minkina

state: WA

address: William H. Foege Hall, 3720 15th Ave NE

department: Genome Sciences

country: USA

institute: University of Washington

description:
lineage_profiles_wATAC.txt
C3-TARGp7_GACTAGTCTA_S411

library_source: transcriptomic

data_processing:
demultiplex using bcl2fastq
adaptor trimming using trim_galore
align to reference genome using STAR
reads deduplicated by UMIs
(All code available at: https://github.com/minkinaa/TheLorax)
sciRNA_lib:
Sequencing was performed as previously described (Cao et al. 2017). Reads were adapter-trimmed using trim_galore and aligned to the reference genome (hg38) using STAR. Non-unique mappers were removed. Reads were then deduplicated using a custom script (190223_sciRNA_remove_duplicates.cpp), taking into account both UMIs and cell indices to call a duplicated read. Only cells with at least 2048 deduplicated non-mitochondrial UMIs were used for subsequent analyses.
A custom script (190704_process_sciRNA_mapped_file.cpp) was used to map reads to genes. Reads which overlapped multiple genes but only fell in an exon in one gene were counted towards that gene.
RNA processing to generate the cell by gene raw counts file is implemented in script 190807_sciRNA_wrapper_ALL.txt, with user-defined UMI cutoff of 2^11.
sciATAC_lib:
For processing sci-ATAC-seq sequencing reads, we first compare observed and expected lists of single cell indices, correcting any indices with a likely off-by-one error. All reads are then adaptor trimmed using trimmomatic (parameters: TRAILING:3 SLIDINGWINDOW:4:10 MINLEN:20), and all reads associated with a single cell are then aligned to the genome using bowtie2 (hg38 genome build). Reads are then deduplicated by UMIs using a custom script (191226_CROPt_process_atac_bedfile.cpp). Both cell by gene and cell by interval counts were generated using a custom script (191226_CROPt_make_cell_by_interval_count_file.cpp).
Lineage_wRNA & Lineage_wATAC:
Processing of raw data to generate the categorical processed data file is described in associated manuscript ("Computational processing and edit calling from lineage target sequencing data") with all associated code at https://github.com/minkinaa/TheLorax.
Cell IDs found in the processed data file are related to raw fastq files as follows:
sciRNA_lib: Each fastq pair file contains information from 25 cells (or less). The cell IDs are a combination of the plate/batch, PCR well index (index #2) during combinatorial indexing (in fastq file name), and index #1, the last 10 bases of the read1 sequence. E.g. the raw data for the cell called "p1A10_ACTAATTGAG", can be found in the raw data file "p1A10-RNA_CCAGGTCTAC_S10", with those sequences with "ACTAATTGAG" as the last 10 bases in the R1 file corresponding to this cell. The first 8 bases of R1 are the UMI.
sciATAC_lib: Cell IDs corresponding to those found in the processed file can be found in the sequence name in the fastq (e.g. "@p2H1_TGAGCTACTT-R1.1" --> cell ID = "p2H1_TGAGCTACTT")
Lineage_wRNA & Lineage_wATAC: Cell IDs are related to fastq file names as described for "sciRNA_lib" except index #1 is located in positions 9-18 in the R1 fastq file. The first 8 bases of R1 are the UMI. Read structure is further describe in manuscript Materials & Methods, and at https://github.com/minkinaa/TheLorax.
A list of index #1's can be found in supplementary file "Index_1_List.txt".
Assembly: hg38
Supplementary files format and content: Tab-separated values, raw cell by gene/tss counts matrices

molecule: total RNA

organism: Homo sapiens

extract_protocol:
sci-RNA-seq: whole cells, methanol fixes; sci-ATAC-seq: nuclei
sci-RNA-seq-2level, sci-ATAC-seq2level, targeted lineage mRNA capture as described

tag: cell type

tag: data type

value: Targeted lineage amplicon captured alongside sci-ATAC-seq


title: Lineage_wATAC-p7C12

description:
lineage_profiles_wATAC.txt
C12-TARGp7_CTCGGTCAAT_S420


title: Lineage_wATAC-p7C11

description:
lineage_profiles_wATAC.txt
C11-TARGp7_GGTAGGTCTC_S419


title: Lineage_wATAC-p7C6

description:
lineage_profiles_wATAC.txt
C6-TARGp7_AGTTGCATCT_S414


title: Lineage_wATAC-p7C4

description:
lineage_profiles_wATAC.txt
C4-TARGp7_CTGCTTCGAC_S412


title: Lineage_wATAC-p7C5

description:
lineage_profiles_wATAC.txt
C5-TARGp7_CCTAGCGCCT_S413


title: Lineage_wATAC-p7C2

description:
lineage_profiles_wATAC.txt
C2-TARGp7_TCATCTCGAT_S410


title: Lineage_wATAC-p7C1

description:
lineage_profiles_wATAC.txt
C1-TARGp7_GTTCCGACGA_S409


title: Lineage_wATAC-p7C10

description:
lineage_profiles_wATAC.txt
C10-TARGp7_GATACCTAAG_S418


title: Lineage_wATAC-p7C7

description:
lineage_profiles_wATAC.txt
C7-TARGp7_TCGTAGGCTT_S415


title: Lineage_wATAC-p7B9

description:
lineage_profiles_wATAC.txt
B9-TARGp7_AGCGTCAATG_S405


title: Lineage_wATAC-p7B7

description:
lineage_profiles_wATAC.txt
B7-TARGp7_TGATTCCTCA_S403


title: Lineage_wATAC-p7B2

description:
lineage_profiles_wATAC.txt
B2-TARGp7_GGACTCATTG_S398


title: Lineage_wATAC-p7B12

description:
lineage_profiles_wATAC.txt
B12-TARGp7_TGAGGTAGAA_S408


title: Lineage_wATAC-p7B4

description:
lineage_profiles_wATAC.txt
B4-TARGp7_GGAACGATGG_S400


title: Lineage_wATAC-p7B6

description:
lineage_profiles_wATAC.txt
B6-TARGp7_GTCGCTCAGT_S402


title: Lineage_wATAC-p7B5

description:
lineage_profiles_wATAC.txt
B5-TARGp7_ACTCTCTCAA_S401


title: Lineage_wATAC-p7B1

description:
lineage_profiles_wATAC.txt
B1-TARGp7_TTAACGTACC_S397


title: Lineage_wATAC-p7B11

description:
lineage_profiles_wATAC.txt
B11-TARGp7_TTGAGTATCA_S407


title: Lineage_wATAC-p7A9

description:
lineage_profiles_wATAC.txt
A9-TARGp7_TCGATATTGA_S393


title: Lineage_wATAC-p7A7

description:
lineage_profiles_wATAC.txt
A7-TARGp7_TTAGATTCCG_S391


title: Lineage_wATAC-p7B10

description:
lineage_profiles_wATAC.txt
B10-TARGp7_CGAAGGACGA_S406


title: Lineage_wATAC-p7A8

description:
lineage_profiles_wATAC.txt
A8-TARGp7_GATCAGTCAT_S392


title: Lineage_wATAC-p7A4

description:
lineage_profiles_wATAC.txt
A4-TARGp7_CTCGTCTAGG_S388


title: Lineage_wATAC-p7A5

description:
lineage_profiles_wATAC.txt
A5-TARGp7_GCTCTAACGA_S389


title: Lineage_wATAC-p7B8

description:
lineage_profiles_wATAC.txt
B8-TARGp7_CCGTCGGAGG_S404


title: Lineage_wATAC-p7A3

description:
lineage_profiles_wATAC.txt
A3-TARGp7_GTTGACGGCC_S387


title: Lineage_wATAC-p7A2

description:
lineage_profiles_wATAC.txt
A2-TARGp7_CGACTACCAA_S386


title: Lineage_wATAC-p6H6

description:
lineage_profiles_wATAC.txt
H6-TARGp6_TCATCTAATC_S378


title: Lineage_wATAC-p6H7

description:
lineage_profiles_wATAC.txt
H7-TARGp6_AGATCCTATA_S379


title: Lineage_wATAC-p7A12

description:
lineage_profiles_wATAC.txt
A12-TARGp7_AACGGACCAA_S396


title: Lineage_wATAC-p7A11

description:
lineage_profiles_wATAC.txt
A11-TARGp7_TTGGTCATAA_S395


title: Lineage_wATAC-p7A10

description:
lineage_profiles_wATAC.txt
A10-TARGp7_CCAGGTCTAC_S394


title: Lineage_wATAC-p6H8

description:
lineage_profiles_wATAC.txt
H8-TARGp6_CCTATAAGCT_S380


title: Lineage_wATAC-p7A1

description:
lineage_profiles_wATAC.txt
A1-TARGp7_CTCGATGGAG_S385


title: Lineage_wATAC-p6H9

description:
lineage_profiles_wATAC.txt
H9-TARGp6_GATTGCAGAC_S381


title: Lineage_wATAC-p7B3

description:
lineage_profiles_wATAC.txt
B3-TARGp7_GAACTGCATC_S399


title: Lineage_wATAC-p6H5

description:
lineage_profiles_wATAC.txt
H5-TARGp6_AACTTATAAG_S377


title: Lineage_wATAC-p6H4

description:
lineage_profiles_wATAC.txt
H4-TARGp6_TGCCAGATGG_S376


title: Lineage_wATAC-p6H3

description:
lineage_profiles_wATAC.txt
H3-TARGp6_CCAAGCTGAA_S375


title: Lineage_wATAC-p6H1

description:
lineage_profiles_wATAC.txt
H1-TARGp6_TTCTACGCCA_S373


title: Lineage_wATAC-p6H11

description:
lineage_profiles_wATAC.txt
H11-TARGp6_AAGATCCAAC_S383


title: Lineage_wATAC-p6H2

description:
lineage_profiles_wATAC.txt
H2-TARGp6_TGGCCGCAAT_S374


title: Lineage_wATAC-p6H10

description:
lineage_profiles_wATAC.txt
H10-TARGp6_ATAAGAGGCG_S382


title: Lineage_wATAC-p6G8

description:
lineage_profiles_wATAC.txt
G8-TARGp6_TTGGAGTCGG_S368


title: Lineage_wATAC-p7A6

description:
lineage_profiles_wATAC.txt
A6-TARGp7_TGATAGAACG_S390


title: Lineage_wATAC-p6G7

description:
lineage_profiles_wATAC.txt
G7-TARGp6_TCTATAAGGA_S367


title: Lineage_wATAC-p6G5

description:
lineage_profiles_wATAC.txt
G5-TARGp6_TGATACGAGT_S365


title: Lineage_wATAC-p6G4

description:
lineage_profiles_wATAC.txt
G4-TARGp6_ACGCAACTCC_S364


title: Lineage_wATAC-p6G6

description:
lineage_profiles_wATAC.txt
G6-TARGp6_CATTATTACC_S366


title: Lineage_wATAC-p6G3

description:
lineage_profiles_wATAC.txt
G3-TARGp6_CAAGATTAAG_S363


title: Lineage_wATAC-p6G2

description:
lineage_profiles_wATAC.txt
G2-TARGp6_GTCATTGCGC_S362


title: Lineage_wATAC-p6G12

description:
lineage_profiles_wATAC.txt
G12-TARGp6_ACTGAATTCC_S372


title: Lineage_wATAC-p6G11

description:
lineage_profiles_wATAC.txt
G11-TARGp6_TGGCGTAGGT_S371


title: Lineage_wATAC-p6G10

description:
lineage_profiles_wATAC.txt
G10-TARGp6_ATAGGATATG_S370


title: Lineage_wATAC-p6F9

description:
lineage_profiles_wATAC.txt
F9-TARGp6_AACCTAGCTT_S357


title: Lineage_wATAC-p6F8

description:
lineage_profiles_wATAC.txt
F8-TARGp6_AGGATTACCA_S356


title: Lineage_wATAC-p6F6

description:
lineage_profiles_wATAC.txt
F6-TARGp6_ACGAGGACCT_S354


title: Lineage_wATAC-p6F7

description:
lineage_profiles_wATAC.txt
F7-TARGp6_TATAACTTCC_S355


title: Lineage_wATAC-p6F4

description:
lineage_profiles_wATAC.txt
F4-TARGp6_AACGAGGCTA_S352


title: Lineage_wATAC-p6F2

description:
lineage_profiles_wATAC.txt
F2-TARGp6_CGTCCGTCCT_S350


title: Lineage_wATAC-p6H12

description:
lineage_profiles_wATAC.txt
H12-TARGp6_CTGCAATCGC_S384


title: Lineage_wATAC-p6F3

description:
lineage_profiles_wATAC.txt
F3-TARGp6_GGTCCAGGAG_S351


title: Lineage_wATAC-p6G9

description:
lineage_profiles_wATAC.txt
G9-TARGp6_CAAGCTTGGC_S369


title: Lineage_wATAC-p6F10

description:
lineage_profiles_wATAC.txt
F10-TARGp6_AGTCCGCGGA_S358


title: Lineage_wATAC-p6F1

description:
lineage_profiles_wATAC.txt
F1-TARGp6_AACTACCGAC_S349


title: Lineage_wATAC-p6F11

description:
lineage_profiles_wATAC.txt
F11-TARGp6_ACTATCCGCA_S359


title: Lineage_wATAC-p6E4

description:
lineage_profiles_wATAC.txt
E4-TARGp6_AAGCCGGCTG_S340


title: Lineage_wATAC-p6E9

description:
lineage_profiles_wATAC.txt
E9-TARGp6_TCCGTCGCCA_S345


title: Lineage_wATAC-p6E7

description:
lineage_profiles_wATAC.txt
E7-TARGp6_TCCGGTAATC_S343


title: Lineage_wATAC-p6E8

description:
lineage_profiles_wATAC.txt
E8-TARGp6_ACCGTTACGA_S344


title: Lineage_wATAC-p6E5

description:
lineage_profiles_wATAC.txt
E5-TARGp6_CTCCGGTTCT_S341


title: Lineage_wATAC-p6E6

description:
lineage_profiles_wATAC.txt
E6-TARGp6_CATGCATCTC_S342


title: Lineage_wATAC-p6E3

description:
lineage_profiles_wATAC.txt
E3-TARGp6_AGGTCAATTA_S339


title: Lineage_wATAC-p6E2

description:
lineage_profiles_wATAC.txt
E2-TARGp6_ACTATCTTGA_S338


title: Lineage_wATAC-p6D9

description:
lineage_profiles_wATAC.txt
D9-TARGp6_GACCTCTCTG_S333


title: Lineage_wATAC-p6G1

description:
lineage_profiles_wATAC.txt
G1-TARGp6_GACCGTAGCA_S361


title: Lineage_wATAC-p6E1

description:
lineage_profiles_wATAC.txt
E1-TARGp6_GCTCTCGCCT_S337


title: Lineage_wATAC-p6E12

description:
lineage_profiles_wATAC.txt
E12-TARGp6_ACTTCCGAAT_S348


title: Lineage_wATAC-p6E11

description:
lineage_profiles_wATAC.txt
E11-TARGp6_TGGACTTGAC_S347


title: Lineage_wATAC-p6D8

description:
lineage_profiles_wATAC.txt
D8-TARGp6_CGATCATTAC_S332


title: Lineage_wATAC-p6E10

description:
lineage_profiles_wATAC.txt
E10-TARGp6_GGCTATGACT_S346


title: Lineage_wATAC-p6F12

description:
lineage_profiles_wATAC.txt
F12-TARGp6_CGAGCTGCCA_S360


title: Lineage_wATAC-p6D7

description:
lineage_profiles_wATAC.txt
D7-TARGp6_ACCAAGATCT_S331


title: Lineage_wATAC-p6D4

description:
lineage_profiles_wATAC.txt
D4-TARGp6_GACCTCCGCC_S328


title: Lineage_wATAC-p6D5

description:
lineage_profiles_wATAC.txt
D5-TARGp6_TCTAGAACTA_S329


title: Lineage_wATAC-p6D6

description:
lineage_profiles_wATAC.txt
D6-TARGp6_CTAACTCCAA_S330


title: Lineage_wATAC-p6F5

description:
lineage_profiles_wATAC.txt
F5-TARGp6_ACGTTCAACC_S353


title: Lineage_wATAC-p6D3

description:
lineage_profiles_wATAC.txt
D3-TARGp6_CGGCGAGACC_S327


title: Lineage_wATAC-p6D11

description:
lineage_profiles_wATAC.txt
D11-TARGp6_CGAGTTAGAG_S335


title: Lineage_wATAC-p6D10

description:
lineage_profiles_wATAC.txt
D10-TARGp6_GGCTAATTAA_S334


title: Lineage_wATAC-p6C9

description:
lineage_profiles_wATAC.txt
C9-TARGp6_GCAACTGGCA_S321


title: Lineage_wATAC-p6D1

description:
lineage_profiles_wATAC.txt
D1-TARGp6_CGCCGCCTCC_S325


title: Lineage_wATAC-p6D12

description:
lineage_profiles_wATAC.txt
D12-TARGp6_GATGATCGTA_S336


title: Lineage_wATAC-p6C8

description:
lineage_profiles_wATAC.txt
C8-TARGp6_AATTGCCTAC_S320


title: Lineage_wATAC-p6C7

description:
lineage_profiles_wATAC.txt
C7-TARGp6_TCGTAGGCTT_S319


title: Lineage_wATAC-p6C5

description:
lineage_profiles_wATAC.txt
C5-TARGp6_CCTAGCGCCT_S317


title: Lineage_wATAC-p6C6

description:
lineage_profiles_wATAC.txt
C6-TARGp6_AGTTGCATCT_S318


title: Lineage_wATAC-p6C4

description:
lineage_profiles_wATAC.txt
C4-TARGp6_CTGCTTCGAC_S316


title: Lineage_wATAC-p6C11

description:
lineage_profiles_wATAC.txt
C11-TARGp6_GGTAGGTCTC_S323


title: Lineage_wATAC-p6C3

description:
lineage_profiles_wATAC.txt
C3-TARGp6_GACTAGTCTA_S315


title: Lineage_wATAC-p6B9

description:
lineage_profiles_wATAC.txt
B9-TARGp6_AGCGTCAATG_S309


title: Lineage_wATAC-p6C2

description:
lineage_profiles_wATAC.txt
C2-TARGp6_TCATCTCGAT_S314


title: Lineage_wATAC-p6B8

description:
lineage_profiles_wATAC.txt
B8-TARGp6_CCGTCGGAGG_S308


title: Lineage_wATAC-p6C1

description:
lineage_profiles_wATAC.txt
C1-TARGp6_GTTCCGACGA_S313


title: Lineage_wATAC-p6B4

description:
lineage_profiles_wATAC.txt
B4-TARGp6_GGAACGATGG_S304


title: Lineage_wATAC-p6B6

description:
lineage_profiles_wATAC.txt
B6-TARGp6_GTCGCTCAGT_S306


title: Lineage_wATAC-p6C12

description:
lineage_profiles_wATAC.txt
C12-TARGp6_CTCGGTCAAT_S324


title: Lineage_wATAC-p6C10

description:
lineage_profiles_wATAC.txt
C10-TARGp6_GATACCTAAG_S322


title: Lineage_wATAC-p6B2

description:
lineage_profiles_wATAC.txt
B2-TARGp6_GGACTCATTG_S302


title: Lineage_wATAC-p6B3

description:
lineage_profiles_wATAC.txt
B3-TARGp6_GAACTGCATC_S303


title: Lineage_wATAC-p6B7

description:
lineage_profiles_wATAC.txt
B7-TARGp6_TGATTCCTCA_S307


title: Lineage_wATAC-p6B12

description:
lineage_profiles_wATAC.txt
B12-TARGp6_TGAGGTAGAA_S312


title: Lineage_wATAC-p6B1

description:
lineage_profiles_wATAC.txt
B1-TARGp6_TTAACGTACC_S301


title: Lineage_wATAC-p6B10

description:
lineage_profiles_wATAC.txt
B10-TARGp6_CGAAGGACGA_S310


title: Lineage_wATAC-p6B5

description:
lineage_profiles_wATAC.txt
B5-TARGp6_ACTCTCTCAA_S305


title: Lineage_wATAC-p6D2

description:
lineage_profiles_wATAC.txt
D2-TARGp6_CAAGTACTGG_S326


title: Lineage_wATAC-p6B11

description:
lineage_profiles_wATAC.txt
B11-TARGp6_TTGAGTATCA_S311


title: Lineage_wATAC-p6A7

description:
lineage_profiles_wATAC.txt
A7-TARGp6_TTAGATTCCG_S295


title: Lineage_wATAC-p6A8

description:
lineage_profiles_wATAC.txt
A8-TARGp6_GATCAGTCAT_S296


title: Lineage_wATAC-p6A5

description:
lineage_profiles_wATAC.txt
A5-TARGp6_GCTCTAACGA_S293


title: Lineage_wATAC-p6A6

description:
lineage_profiles_wATAC.txt
A6-TARGp6_TGATAGAACG_S294


title: Lineage_wATAC-p6A9

description:
lineage_profiles_wATAC.txt
A9-TARGp6_TCGATATTGA_S297


title: Lineage_wATAC-p6A3

description:
lineage_profiles_wATAC.txt
A3-TARGp6_GTTGACGGCC_S291


title: Lineage_wATAC-p6A4

description:
lineage_profiles_wATAC.txt
A4-TARGp6_CTCGTCTAGG_S292


title: Lineage_wATAC-p6A2

description:
lineage_profiles_wATAC.txt
A2-TARGp6_CGACTACCAA_S290


title: Lineage_wATAC-p6A12

description:
lineage_profiles_wATAC.txt
A12-TARGp6_AACGGACCAA_S300


title: Lineage_wATAC-p6A1

description:
lineage_profiles_wATAC.txt
A1-TARGp6_CTCGATGGAG_S289


title: Lineage_wATAC-p6A10

description:
lineage_profiles_wATAC.txt
A10-TARGp6_CCAGGTCTAC_S298


title: Lineage_wATAC-p5H8

description:
lineage_profiles_wATAC.txt
H8-TARGp5_CCTATAAGCT_S92


title: Lineage_wATAC-p5H9

description:
lineage_profiles_wATAC.txt
H9-TARGp5_GATTGCAGAC_S93


title: Lineage_wATAC-p6A11

description:
lineage_profiles_wATAC.txt
A11-TARGp6_TTGGTCATAA_S299


title: Lineage_wATAC-p5H5

description:
lineage_profiles_wATAC.txt
H5-TARGp5_AACTTATAAG_S89


title: Lineage_wATAC-p5H1

description:
lineage_profiles_wATAC.txt
H1-TARGp5_TTCTACGCCA_S85


title: Lineage_wATAC-p5H4

description:
lineage_profiles_wATAC.txt
H4-TARGp5_TGCCAGATGG_S88


title: Lineage_wATAC-p5H2

description:
lineage_profiles_wATAC.txt
H2-TARGp5_TGGCCGCAAT_S86


title: Lineage_wATAC-p5H11

description:
lineage_profiles_wATAC.txt
H11-TARGp5_AAGATCCAAC_S95


title: Lineage_wATAC-p5H3

description:
lineage_profiles_wATAC.txt
H3-TARGp5_CCAAGCTGAA_S87


title: Lineage_wATAC-p5H10

description:
lineage_profiles_wATAC.txt
H10-TARGp5_ATAAGAGGCG_S94


title: Lineage_wATAC-p5G8

description:
lineage_profiles_wATAC.txt
G8-TARGp5_TTGGAGTCGG_S80


title: Lineage_wATAC-p5H12

description:
lineage_profiles_wATAC.txt
H12-TARGp5_CTGCAATCGC_S96


title: Lineage_wATAC-p5G9

description:
lineage_profiles_wATAC.txt
G9-TARGp5_CAAGCTTGGC_S81


title: Lineage_wATAC-p5G3

description:
lineage_profiles_wATAC.txt
G3-TARGp5_CAAGATTAAG_S75


title: Lineage_wATAC-p5G4

description:
lineage_profiles_wATAC.txt
G4-TARGp5_ACGCAACTCC_S76


title: Lineage_wATAC-p5G5

description:
lineage_profiles_wATAC.txt
G5-TARGp5_TGATACGAGT_S77


title: Lineage_wATAC-p5G12

description:
lineage_profiles_wATAC.txt
G12-TARGp5_ACTGAATTCC_S84


title: Lineage_wATAC-p5G6

description:
lineage_profiles_wATAC.txt
G6-TARGp5_CATTATTACC_S78


title: Lineage_wATAC-p5G2

description:
lineage_profiles_wATAC.txt
G2-TARGp5_GTCATTGCGC_S74


title: Lineage_wATAC-p5G7

description:
lineage_profiles_wATAC.txt
G7-TARGp5_TCTATAAGGA_S79


title: Lineage_wATAC-p5G1

description:
lineage_profiles_wATAC.txt
G1-TARGp5_GACCGTAGCA_S73


title: Lineage_wATAC-p5H7

description:
lineage_profiles_wATAC.txt
H7-TARGp5_AGATCCTATA_S91


title: Lineage_wATAC-p5G10

description:
lineage_profiles_wATAC.txt
G10-TARGp5_ATAGGATATG_S82


title: Lineage_wATAC-p5G11

description:
lineage_profiles_wATAC.txt
G11-TARGp5_TGGCGTAGGT_S83


title: Lineage_wATAC-p5F9

description:
lineage_profiles_wATAC.txt
F9-TARGp5_AACCTAGCTT_S69


title: Lineage_wATAC-p5F7

description:
lineage_profiles_wATAC.txt
F7-TARGp5_TATAACTTCC_S67


title: Lineage_wATAC-p5F6

description:
lineage_profiles_wATAC.txt
F6-TARGp5_ACGAGGACCT_S66


title: Lineage_wATAC-p5F8

description:
lineage_profiles_wATAC.txt
F8-TARGp5_AGGATTACCA_S68


title: Lineage_wATAC-p5H6

description:
lineage_profiles_wATAC.txt
H6-TARGp5_TCATCTAATC_S90


title: Lineage_wATAC-p5F4

description:
lineage_profiles_wATAC.txt
F4-TARGp5_AACGAGGCTA_S64


title: Lineage_wATAC-p5F5

description:
lineage_profiles_wATAC.txt
F5-TARGp5_ACGTTCAACC_S65


title: Lineage_wATAC-p5F1

description:
lineage_profiles_wATAC.txt
F1-TARGp5_AACTACCGAC_S61


title: Lineage_wATAC-p5E9

description:
lineage_profiles_wATAC.txt
E9-TARGp5_TCCGTCGCCA_S57


title: Lineage_wATAC-p5F12

description:
lineage_profiles_wATAC.txt
F12-TARGp5_CGAGCTGCCA_S72


title: Lineage_wATAC-p5E7

description:
lineage_profiles_wATAC.txt
E7-TARGp5_TCCGGTAATC_S55


title: Lineage_wATAC-p5E8

description:
lineage_profiles_wATAC.txt
E8-TARGp5_ACCGTTACGA_S56


title: Lineage_wATAC-p5E6

description:
lineage_profiles_wATAC.txt
E6-TARGp5_CATGCATCTC_S54


title: Lineage_wATAC-p5F11

description:
lineage_profiles_wATAC.txt
F11-TARGp5_ACTATCCGCA_S71


title: Lineage_wATAC-p5E5

description:
lineage_profiles_wATAC.txt
E5-TARGp5_CTCCGGTTCT_S53


title: Lineage_wATAC-p5E4

description:
lineage_profiles_wATAC.txt
E4-TARGp5_AAGCCGGCTG_S52


title: Lineage_wATAC-p5E1

description:
lineage_profiles_wATAC.txt
E1-TARGp5_GCTCTCGCCT_S49


title: Lineage_wATAC-p5E3

description:
lineage_profiles_wATAC.txt
E3-TARGp5_AGGTCAATTA_S51


title: Lineage_wATAC-p5E2

description:
lineage_profiles_wATAC.txt
E2-TARGp5_ACTATCTTGA_S50


title: Lineage_wATAC-p5E10

description:
lineage_profiles_wATAC.txt
E10-TARGp5_GGCTATGACT_S58


title: Lineage_wATAC-p5D9

description:
lineage_profiles_wATAC.txt
D9-TARGp5_GACCTCTCTG_S45


title: Lineage_wATAC-p5E12

description:
lineage_profiles_wATAC.txt
E12-TARGp5_ACTTCCGAAT_S60


title: Lineage_wATAC-p5E11

description:
lineage_profiles_wATAC.txt
E11-TARGp5_TGGACTTGAC_S59


title: Lineage_wATAC-p5D4

description:
lineage_profiles_wATAC.txt
D4-TARGp5_GACCTCCGCC_S40


title: Lineage_wATAC-p5D7

description:
lineage_profiles_wATAC.txt
D7-TARGp5_ACCAAGATCT_S43


title: Lineage_wATAC-p5F3

description:
lineage_profiles_wATAC.txt
F3-TARGp5_GGTCCAGGAG_S63


title: Lineage_wATAC-p5D5

description:
lineage_profiles_wATAC.txt
D5-TARGp5_TCTAGAACTA_S41


title: Lineage_wATAC-p5D3

description:
lineage_profiles_wATAC.txt
D3-TARGp5_CGGCGAGACC_S39


title: Lineage_wATAC-p5D2

description:
lineage_profiles_wATAC.txt
D2-TARGp5_CAAGTACTGG_S38


title: Lineage_wATAC-p5D8

description:
lineage_profiles_wATAC.txt
D8-TARGp5_CGATCATTAC_S44


title: Lineage_wATAC-p5D6

description:
lineage_profiles_wATAC.txt
D6-TARGp5_CTAACTCCAA_S42


title: Lineage_wATAC-p5D1

description:
lineage_profiles_wATAC.txt
D1-TARGp5_CGCCGCCTCC_S37


title: Lineage_wATAC-p5F2

description:
lineage_profiles_wATAC.txt
F2-TARGp5_CGTCCGTCCT_S62


title: Lineage_wATAC-p5F10

description:
lineage_profiles_wATAC.txt
F10-TARGp5_AGTCCGCGGA_S70


title: Lineage_wATAC-p5D11

description:
lineage_profiles_wATAC.txt
D11-TARGp5_CGAGTTAGAG_S47


title: Lineage_wATAC-p5D10

description:
lineage_profiles_wATAC.txt
D10-TARGp5_GGCTAATTAA_S46


title: Lineage_wATAC-p5D12

description:
lineage_profiles_wATAC.txt
D12-TARGp5_GATGATCGTA_S48


title: Lineage_wATAC-p5C7

description:
lineage_profiles_wATAC.txt
C7-TARGp5_TCGTAGGCTT_S31


title: Lineage_wATAC-p5C8

description:
lineage_profiles_wATAC.txt
C8-TARGp5_AATTGCCTAC_S32


title: Lineage_wATAC-p5C5

description:
lineage_profiles_wATAC.txt
C5-TARGp5_CCTAGCGCCT_S29


title: Lineage_wATAC-p5C9

description:
lineage_profiles_wATAC.txt
C9-TARGp5_GCAACTGGCA_S33


title: Lineage_wATAC-p5C4

description:
lineage_profiles_wATAC.txt
C4-TARGp5_CTGCTTCGAC_S28


title: Lineage_wATAC-p5C6

description:
lineage_profiles_wATAC.txt
C6-TARGp5_AGTTGCATCT_S30


title: Lineage_wATAC-p5C12

description:
lineage_profiles_wATAC.txt
C12-TARGp5_CTCGGTCAAT_S36


title: Lineage_wATAC-p5C11

description:
lineage_profiles_wATAC.txt
C11-TARGp5_GGTAGGTCTC_S35


title: Lineage_wATAC-p5B8

description:
lineage_profiles_wATAC.txt
B8-TARGp5_CCGTCGGAGG_S20


title: Lineage_wATAC-p5B6

description:
lineage_profiles_wATAC.txt
B6-TARGp5_GTCGCTCAGT_S18


title: Lineage_wATAC-p5B4

description:
lineage_profiles_wATAC.txt
B4-TARGp5_GGAACGATGG_S16


title: Lineage_wATAC-p5B5

description:
lineage_profiles_wATAC.txt
B5-TARGp5_ACTCTCTCAA_S17


title: Lineage_wATAC-p5A7

description:
lineage_profiles_wATAC.txt
A7-TARGp5_TTAGATTCCG_S7


title: Lineage_wATAC-p5A8

description:
lineage_profiles_wATAC.txt
A8-TARGp5_GATCAGTCAT_S8


title: Lineage_wATAC-p5B10

description:
lineage_profiles_wATAC.txt
B10-TARGp5_CGAAGGACGA_S22


title: Lineage_wATAC-p5B12

description:
lineage_profiles_wATAC.txt
B12-TARGp5_TGAGGTAGAA_S24


title: Lineage_wATAC-p5B2

description:
lineage_profiles_wATAC.txt
B2-TARGp5_GGACTCATTG_S14


title: Lineage_wATAC-p5B11

description:
lineage_profiles_wATAC.txt
B11-TARGp5_TTGAGTATCA_S23


title: Lineage_wATAC-p5C3

description:
lineage_profiles_wATAC.txt
C3-TARGp5_GACTAGTCTA_S27


title: Lineage_wATAC-p5A5

description:
lineage_profiles_wATAC.txt
A5-TARGp5_GCTCTAACGA_S5


title: Lineage_wATAC-p5B3

description:
lineage_profiles_wATAC.txt
B3-TARGp5_GAACTGCATC_S15


title: Lineage_wATAC-p5B1

description:
lineage_profiles_wATAC.txt
B1-TARGp5_TTAACGTACC_S13


title: Lineage_wATAC-p5A2

description:
lineage_profiles_wATAC.txt
A2-TARGp5_CGACTACCAA_S2


title: Lineage_wATAC-p5A6

description:
lineage_profiles_wATAC.txt
A6-TARGp5_TGATAGAACG_S6


title: Lineage_wATAC-p5A4

description:
lineage_profiles_wATAC.txt
A4-TARGp5_CTCGTCTAGG_S4


title: Lineage_wATAC-p5A1

description:
lineage_profiles_wATAC.txt
A1-TARGp5_CTCGATGGAG_S1


title: Lineage_wATAC-p5A3

description:
lineage_profiles_wATAC.txt
A3-TARGp5_GTTGACGGCC_S3


title: Lineage_wATAC-p5C1

description:
lineage_profiles_wATAC.txt
C1-TARGp5_GTTCCGACGA_S25


title: Lineage_wATAC-p5C10

description:
lineage_profiles_wATAC.txt
C10-TARGp5_GATACCTAAG_S34


title: Lineage_wATAC-p5C2

description:
lineage_profiles_wATAC.txt
C2-TARGp5_TCATCTCGAT_S26


title: Lineage_wATAC-p5B9

description:
lineage_profiles_wATAC.txt
B9-TARGp5_AGCGTCAATG_S21


title: Lineage_wATAC-p5A11

description:
lineage_profiles_wATAC.txt
A11-TARGp5_TTGGTCATAA_S11


title: Lineage_wATAC-p5B7

description:
lineage_profiles_wATAC.txt
B7-TARGp5_TGATTCCTCA_S19


title: Lineage_wATAC-p4H9

description:
lineage_profiles_wATAC.txt
H9-TARGp4_GATTGCAGAC_S381


title: Lineage_wATAC-p4H8

description:
lineage_profiles_wATAC.txt
H8-TARGp4_CCTATAAGCT_S380


title: Lineage_wATAC-p5A9

description:
lineage_profiles_wATAC.txt
A9-TARGp5_TCGATATTGA_S9


title: Lineage_wATAC-p4H7

description:
lineage_profiles_wATAC.txt
H7-TARGp4_AGATCCTATA_S379


title: Lineage_wATAC-p4H5

description:
lineage_profiles_wATAC.txt
H5-TARGp4_AACTTATAAG_S377


title: Lineage_wATAC-p4H4

description:
lineage_profiles_wATAC.txt
H4-TARGp4_TGCCAGATGG_S376


title: Lineage_wATAC-p4H3

description:
lineage_profiles_wATAC.txt
H3-TARGp4_CCAAGCTGAA_S375


title: Lineage_wATAC-p5A12

description:
lineage_profiles_wATAC.txt
A12-TARGp5_AACGGACCAA_S12


title: Lineage_wATAC-p5A10

description:
lineage_profiles_wATAC.txt
A10-TARGp5_CCAGGTCTAC_S10


title: Lineage_wATAC-p4H10

description:
lineage_profiles_wATAC.txt
H10-TARGp4_ATAAGAGGCG_S382


title: Lineage_wATAC-p4H2

description:
lineage_profiles_wATAC.txt
H2-TARGp4_TGGCCGCAAT_S374


title: Lineage_wATAC-p4H1

description:
lineage_profiles_wATAC.txt
H1-TARGp4_TTCTACGCCA_S373


title: Lineage_wATAC-p4G8

description:
lineage_profiles_wATAC.txt
G8-TARGp4_TTGGAGTCGG_S368


title: Lineage_wATAC-p4G3

description:
lineage_profiles_wATAC.txt
G3-TARGp4_CAAGATTAAG_S363


title: Lineage_wATAC-p4G12

description:
lineage_profiles_wATAC.txt
G12-TARGp4_ACTGAATTCC_S372


title: Lineage_wATAC-p4G4

description:
lineage_profiles_wATAC.txt
G4-TARGp4_ACGCAACTCC_S364


title: Lineage_wATAC-p4G5

description:
lineage_profiles_wATAC.txt
G5-TARGp4_TGATACGAGT_S365


title: Lineage_wATAC-p4F9

description:
lineage_profiles_wATAC.txt
F9-TARGp4_AACCTAGCTT_S357


title: Lineage_wATAC-p4G11

description:
lineage_profiles_wATAC.txt
G11-TARGp4_TGGCGTAGGT_S371


title: Lineage_wATAC-p4G1

description:
lineage_profiles_wATAC.txt
G1-TARGp4_GACCGTAGCA_S361


title: Lineage_wATAC-p4G10

description:
lineage_profiles_wATAC.txt
G10-TARGp4_ATAGGATATG_S370


title: Lineage_wATAC-p4G6

description:
lineage_profiles_wATAC.txt
G6-TARGp4_CATTATTACC_S366


title: Lineage_wATAC-p4G9

description:
lineage_profiles_wATAC.txt
G9-TARGp4_CAAGCTTGGC_S369


title: Lineage_wATAC-p4F6

description:
lineage_profiles_wATAC.txt
F6-TARGp4_ACGAGGACCT_S354


title: Lineage_wATAC-p4F8

description:
lineage_profiles_wATAC.txt
F8-TARGp4_AGGATTACCA_S356


title: Lineage_wATAC-p4F5

description:
lineage_profiles_wATAC.txt
F5-TARGp4_ACGTTCAACC_S353


title: Lineage_wATAC-p4F7

description:
lineage_profiles_wATAC.txt
F7-TARGp4_TATAACTTCC_S355


title: Lineage_wATAC-p4G7

description:
lineage_profiles_wATAC.txt
G7-TARGp4_TCTATAAGGA_S367


title: Lineage_wATAC-p4H6

description:
lineage_profiles_wATAC.txt
H6-TARGp4_TCATCTAATC_S378


title: Lineage_wATAC-p4F4

description:
lineage_profiles_wATAC.txt
F4-TARGp4_AACGAGGCTA_S352


title: Lineage_wATAC-p4F2

description:
lineage_profiles_wATAC.txt
F2-TARGp4_CGTCCGTCCT_S350


title: Lineage_wATAC-p4F3

description:
lineage_profiles_wATAC.txt
F3-TARGp4_GGTCCAGGAG_S351


title: Lineage_wATAC-p4H11

description:
lineage_profiles_wATAC.txt
H11-TARGp4_AAGATCCAAC_S383


title: Lineage_wATAC-p4H12

description:
lineage_profiles_wATAC.txt
H12-TARGp4_CTGCAATCGC_S384


title: Lineage_wATAC-p4F1

description:
lineage_profiles_wATAC.txt
F1-TARGp4_AACTACCGAC_S349


title: Lineage_wATAC-p4F11

description:
lineage_profiles_wATAC.txt
F11-TARGp4_ACTATCCGCA_S359


title: Lineage_wATAC-p4E9

description:
lineage_profiles_wATAC.txt
E9-TARGp4_TCCGTCGCCA_S345


title: Lineage_wATAC-p4F10

description:
lineage_profiles_wATAC.txt
F10-TARGp4_AGTCCGCGGA_S358


title: Lineage_wATAC-p4F12

description:
lineage_profiles_wATAC.txt
F12-TARGp4_CGAGCTGCCA_S360


title: Lineage_wATAC-p4G2

description:
lineage_profiles_wATAC.txt
G2-TARGp4_GTCATTGCGC_S362


title: Lineage_wATAC-p4E6

description:
lineage_profiles_wATAC.txt
E6-TARGp4_CATGCATCTC_S342


title: Lineage_wATAC-p4E8

description:
lineage_profiles_wATAC.txt
E8-TARGp4_ACCGTTACGA_S344


title: Lineage_wATAC-p4E7

description:
lineage_profiles_wATAC.txt
E7-TARGp4_TCCGGTAATC_S343


title: Lineage_wATAC-p4E12

description:
lineage_profiles_wATAC.txt
E12-TARGp4_ACTTCCGAAT_S348


title: Lineage_wATAC-p4E5

description:
lineage_profiles_wATAC.txt
E5-TARGp4_CTCCGGTTCT_S341


title: Lineage_wATAC-p4E3

description:
lineage_profiles_wATAC.txt
E3-TARGp4_AGGTCAATTA_S339


title: Lineage_wATAC-p4E1

description:
lineage_profiles_wATAC.txt
E1-TARGp4_GCTCTCGCCT_S337


title: Lineage_wATAC-p4E4

description:
lineage_profiles_wATAC.txt
E4-TARGp4_AAGCCGGCTG_S340


title: Lineage_wATAC-p4D7

description:
lineage_profiles_wATAC.txt
D7-TARGp4_ACCAAGATCT_S331


title: Lineage_wATAC-p4E11

description:
lineage_profiles_wATAC.txt
E11-TARGp4_TGGACTTGAC_S347


title: Lineage_wATAC-p4D5

description:
lineage_profiles_wATAC.txt
D5-TARGp4_TCTAGAACTA_S329


title: Lineage_wATAC-p4E2

description:
lineage_profiles_wATAC.txt
E2-TARGp4_ACTATCTTGA_S338


title: Lineage_wATAC-p4E10

description:
lineage_profiles_wATAC.txt
E10-TARGp4_GGCTATGACT_S346


title: Lineage_wATAC-p4D8

description:
lineage_profiles_wATAC.txt
D8-TARGp4_CGATCATTAC_S332


title: Lineage_wATAC-p4D3

description:
lineage_profiles_wATAC.txt
D3-TARGp4_CGGCGAGACC_S327


title: Lineage_wATAC-p4D9

description:
lineage_profiles_wATAC.txt
D9-TARGp4_GACCTCTCTG_S333


title: Lineage_wATAC-p4D1

description:
lineage_profiles_wATAC.txt
D1-TARGp4_CGCCGCCTCC_S325


title: Lineage_wATAC-p4D2

description:
lineage_profiles_wATAC.txt
D2-TARGp4_CAAGTACTGG_S326


title: Lineage_wATAC-p4D4

description:
lineage_profiles_wATAC.txt
D4-TARGp4_GACCTCCGCC_S328


title: Lineage_wATAC-p4D12

description:
lineage_profiles_wATAC.txt
D12-TARGp4_GATGATCGTA_S336


title: Lineage_wATAC-p4C9

description:
lineage_profiles_wATAC.txt
C9-TARGp4_GCAACTGGCA_S321


title: Lineage_wATAC-p4C8

description:
lineage_profiles_wATAC.txt
C8-TARGp4_AATTGCCTAC_S320


title: Lineage_wATAC-p4D11

description:
lineage_profiles_wATAC.txt
D11-TARGp4_CGAGTTAGAG_S335


title: Lineage_wATAC-p4D10

description:
lineage_profiles_wATAC.txt
D10-TARGp4_GGCTAATTAA_S334


title: Lineage_wATAC-p4C7

description:
lineage_profiles_wATAC.txt
C7-TARGp4_TCGTAGGCTT_S319


title: Lineage_wATAC-p4C5

description:
lineage_profiles_wATAC.txt
C5-TARGp4_CCTAGCGCCT_S317


title: Lineage_wATAC-p4D6

description:
lineage_profiles_wATAC.txt
D6-TARGp4_CTAACTCCAA_S330


title: Lineage_wATAC-p4C4

description:
lineage_profiles_wATAC.txt
C4-TARGp4_CTGCTTCGAC_S316


title: Lineage_wATAC-p4C3

description:
lineage_profiles_wATAC.txt
C3-TARGp4_GACTAGTCTA_S315


title: Lineage_wATAC-p4C12

description:
lineage_profiles_wATAC.txt
C12-TARGp4_CTCGGTCAAT_S324


title: Lineage_wATAC-p4C1

description:
lineage_profiles_wATAC.txt
C1-TARGp4_GTTCCGACGA_S313


title: Lineage_wATAC-p4B8

description:
lineage_profiles_wATAC.txt
B8-TARGp4_CCGTCGGAGG_S308


title: Lineage_wATAC-p4B5

description:
lineage_profiles_wATAC.txt
B5-TARGp4_ACTCTCTCAA_S305


title: Lineage_wATAC-p4B4

description:
lineage_profiles_wATAC.txt
B4-TARGp4_GGAACGATGG_S304


title: Lineage_wATAC-p4B9

description:
lineage_profiles_wATAC.txt
B9-TARGp4_AGCGTCAATG_S309


title: Lineage_wATAC-p4B7

description:
lineage_profiles_wATAC.txt
B7-TARGp4_TGATTCCTCA_S307


title: Lineage_wATAC-p4B6

description:
lineage_profiles_wATAC.txt
B6-TARGp4_GTCGCTCAGT_S306


title: Lineage_wATAC-p4C10

description:
lineage_profiles_wATAC.txt
C10-TARGp4_GATACCTAAG_S322


title: Lineage_wATAC-p4C11

description:
lineage_profiles_wATAC.txt
C11-TARGp4_GGTAGGTCTC_S323


title: Lineage_wATAC-p4B1

description:
lineage_profiles_wATAC.txt
B1-TARGp4_TTAACGTACC_S301


title: Lineage_wATAC-p4B2

description:
lineage_profiles_wATAC.txt
B2-TARGp4_GGACTCATTG_S302


title: Lineage_wATAC-p4B3

description:
lineage_profiles_wATAC.txt
B3-TARGp4_GAACTGCATC_S303


title: Lineage_wATAC-p4B10

description:
lineage_profiles_wATAC.txt
B10-TARGp4_CGAAGGACGA_S310


title: Lineage_wATAC-p4A9

description:
lineage_profiles_wATAC.txt
A9-TARGp4_TCGATATTGA_S297


title: Lineage_wATAC-p4A7

description:
lineage_profiles_wATAC.txt
A7-TARGp4_TTAGATTCCG_S295


title: Lineage_wATAC-p4B11

description:
lineage_profiles_wATAC.txt
B11-TARGp4_TTGAGTATCA_S311


title: Lineage_wATAC-p4B12

description:
lineage_profiles_wATAC.txt
B12-TARGp4_TGAGGTAGAA_S312


title: Lineage_wATAC-p4A2

description:
lineage_profiles_wATAC.txt
A2-TARGp4_CGACTACCAA_S290


title: Lineage_wATAC-p4A5

description:
lineage_profiles_wATAC.txt
A5-TARGp4_GCTCTAACGA_S293


title: Lineage_wATAC-p4A8

description:
lineage_profiles_wATAC.txt
A8-TARGp4_GATCAGTCAT_S296


title: Lineage_wATAC-p4C6

description:
lineage_profiles_wATAC.txt
C6-TARGp4_AGTTGCATCT_S318


title: Lineage_wATAC-p4A10

description:
lineage_profiles_wATAC.txt
A10-TARGp4_CCAGGTCTAC_S298


title: Lineage_wATAC-p3H9

description:
lineage_profiles_wATAC.txt
H9-TARGp3_GATTGCAGAC_S285


title: Lineage_wATAC-p4C2

description:
lineage_profiles_wATAC.txt
C2-TARGp4_TCATCTCGAT_S314


title: Lineage_wATAC-p4A3

description:
lineage_profiles_wATAC.txt
A3-TARGp4_GTTGACGGCC_S291


title: Lineage_wATAC-p4A6

description:
lineage_profiles_wATAC.txt
A6-TARGp4_TGATAGAACG_S294


title: Lineage_wATAC-p4A1

description:
lineage_profiles_wATAC.txt
A1-TARGp4_CTCGATGGAG_S289


title: Lineage_wATAC-p4A12

description:
lineage_profiles_wATAC.txt
A12-TARGp4_AACGGACCAA_S300


title: Lineage_wATAC-p4A4

description:
lineage_profiles_wATAC.txt
A4-TARGp4_CTCGTCTAGG_S292


title: Lineage_wATAC-p3H3

description:
lineage_profiles_wATAC.txt
H3-TARGp3_CCAAGCTGAA_S279


title: Lineage_wATAC-p4A11

description:
lineage_profiles_wATAC.txt
A11-TARGp4_TTGGTCATAA_S299


title: Lineage_wATAC-p3H10

description:
lineage_profiles_wATAC.txt
H10-TARGp3_ATAAGAGGCG_S286


title: Lineage_wATAC-p3H12

description:
lineage_profiles_wATAC.txt
H12-TARGp3_CTGCAATCGC_S288


title: Lineage_wATAC-p3G6

description:
lineage_profiles_wATAC.txt
G6-TARGp3_CATTATTACC_S270


title: Lineage_wATAC-p3H7

description:
lineage_profiles_wATAC.txt
H7-TARGp3_AGATCCTATA_S283


title: Lineage_wATAC-p3H11

description:
lineage_profiles_wATAC.txt
H11-TARGp3_AAGATCCAAC_S287


title: Lineage_wATAC-p3H2

description:
lineage_profiles_wATAC.txt
H2-TARGp3_TGGCCGCAAT_S278


title: Lineage_wATAC-p3H4

description:
lineage_profiles_wATAC.txt
H4-TARGp3_TGCCAGATGG_S280


title: Lineage_wATAC-p3H8

description:
lineage_profiles_wATAC.txt
H8-TARGp3_CCTATAAGCT_S284


title: Lineage_wATAC-p3H5

description:
lineage_profiles_wATAC.txt
H5-TARGp3_AACTTATAAG_S281


title: Lineage_wATAC-p3G5

description:
lineage_profiles_wATAC.txt
G5-TARGp3_TGATACGAGT_S269


title: Lineage_wATAC-p3G3

description:
lineage_profiles_wATAC.txt
G3-TARGp3_CAAGATTAAG_S267


title: Lineage_wATAC-p3G12

description:
lineage_profiles_wATAC.txt
G12-TARGp3_ACTGAATTCC_S276


title: Lineage_wATAC-p3H1

description:
lineage_profiles_wATAC.txt
H1-TARGp3_TTCTACGCCA_S277


title: Lineage_wATAC-p3G11

description:
lineage_profiles_wATAC.txt
G11-TARGp3_TGGCGTAGGT_S275


title: Lineage_wATAC-p3G9

description:
lineage_profiles_wATAC.txt
G9-TARGp3_CAAGCTTGGC_S273


title: Lineage_wATAC-p3F7

description:
lineage_profiles_wATAC.txt
F7-TARGp3_TATAACTTCC_S259


title: Lineage_wATAC-p3F5

description:
lineage_profiles_wATAC.txt
F5-TARGp3_ACGTTCAACC_S257


title: Lineage_wATAC-p3G4

description:
lineage_profiles_wATAC.txt
G4-TARGp3_ACGCAACTCC_S268


title: Lineage_wATAC-p3F6

description:
lineage_profiles_wATAC.txt
F6-TARGp3_ACGAGGACCT_S258


title: Lineage_wATAC-p3F1

description:
lineage_profiles_wATAC.txt
F1-TARGp3_AACTACCGAC_S253


title: Lineage_wATAC-p3F2

description:
lineage_profiles_wATAC.txt
F2-TARGp3_CGTCCGTCCT_S254


title: Lineage_wATAC-p3F3

description:
lineage_profiles_wATAC.txt
F3-TARGp3_GGTCCAGGAG_S255


title: Lineage_wATAC-p3G8

description:
lineage_profiles_wATAC.txt
G8-TARGp3_TTGGAGTCGG_S272


title: Lineage_wATAC-p3G7

description:
lineage_profiles_wATAC.txt
G7-TARGp3_TCTATAAGGA_S271


title: Lineage_wATAC-p3G2

description:
lineage_profiles_wATAC.txt
G2-TARGp3_GTCATTGCGC_S266


title: Lineage_wATAC-p3G1

description:
lineage_profiles_wATAC.txt
G1-TARGp3_GACCGTAGCA_S265


title: Lineage_wATAC-p3F9

description:
lineage_profiles_wATAC.txt
F9-TARGp3_AACCTAGCTT_S261


title: Lineage_wATAC-p3H6

description:
lineage_profiles_wATAC.txt
H6-TARGp3_TCATCTAATC_S282


title: Lineage_wATAC-p3E7

description:
lineage_profiles_wATAC.txt
E7-TARGp3_TCCGGTAATC_S247


title: Lineage_wATAC-p3E2

description:
lineage_profiles_wATAC.txt
E2-TARGp3_ACTATCTTGA_S242


title: Lineage_wATAC-p3F8

description:
lineage_profiles_wATAC.txt
F8-TARGp3_AGGATTACCA_S260


title: Lineage_wATAC-p3G10

description:
lineage_profiles_wATAC.txt
G10-TARGp3_ATAGGATATG_S274


title: Lineage_wATAC-p3F4

description:
lineage_profiles_wATAC.txt
F4-TARGp3_AACGAGGCTA_S256


title: Lineage_wATAC-p3F12

description:
lineage_profiles_wATAC.txt
F12-TARGp3_CGAGCTGCCA_S264


title: Lineage_wATAC-p3F11

description:
lineage_profiles_wATAC.txt
F11-TARGp3_ACTATCCGCA_S263


title: Lineage_wATAC-p3E12

description:
lineage_profiles_wATAC.txt
E12-TARGp3_ACTTCCGAAT_S252


title: Lineage_wATAC-p3E11

description:
lineage_profiles_wATAC.txt
E11-TARGp3_TGGACTTGAC_S251


title: Lineage_wATAC-p3F10

description:
lineage_profiles_wATAC.txt
F10-TARGp3_AGTCCGCGGA_S262


title: Lineage_wATAC-p3E8

description:
lineage_profiles_wATAC.txt
E8-TARGp3_ACCGTTACGA_S248


title: Lineage_wATAC-p3D7

description:
lineage_profiles_wATAC.txt
D7-TARGp3_ACCAAGATCT_S235


title: Lineage_wATAC-p3E9

description:
lineage_profiles_wATAC.txt
E9-TARGp3_TCCGTCGCCA_S249


title: Lineage_wATAC-p3E3

description:
lineage_profiles_wATAC.txt
E3-TARGp3_AGGTCAATTA_S243


title: Lineage_wATAC-p3E6

description:
lineage_profiles_wATAC.txt
E6-TARGp3_CATGCATCTC_S246


title: Lineage_wATAC-p3E5

description:
lineage_profiles_wATAC.txt
E5-TARGp3_CTCCGGTTCT_S245


title: Lineage_wATAC-p3D5

description:
lineage_profiles_wATAC.txt
D5-TARGp3_TCTAGAACTA_S233


title: Lineage_wATAC-p3E10

description:
lineage_profiles_wATAC.txt
E10-TARGp3_GGCTATGACT_S250


title: Lineage_wATAC-p3D11

description:
lineage_profiles_wATAC.txt
D11-TARGp3_CGAGTTAGAG_S239


title: Lineage_wATAC-p3C6

description:
lineage_profiles_wATAC.txt
C6-TARGp3_AGTTGCATCT_S222


title: Lineage_wATAC-p3C8

description:
lineage_profiles_wATAC.txt
C8-TARGp3_AATTGCCTAC_S224


title: Lineage_wATAC-p3E4

description:
lineage_profiles_wATAC.txt
E4-TARGp3_AAGCCGGCTG_S244


title: Lineage_wATAC-p3D9

description:
lineage_profiles_wATAC.txt
D9-TARGp3_GACCTCTCTG_S237


title: Lineage_wATAC-p3D12

description:
lineage_profiles_wATAC.txt
D12-TARGp3_GATGATCGTA_S240


title: Lineage_wATAC-p3C5

description:
lineage_profiles_wATAC.txt
C5-TARGp3_CCTAGCGCCT_S221


title: Lineage_wATAC-p3C3

description:
lineage_profiles_wATAC.txt
C3-TARGp3_GACTAGTCTA_S219


title: Lineage_wATAC-p3C11

description:
lineage_profiles_wATAC.txt
C11-TARGp3_GGTAGGTCTC_S227


title: Lineage_wATAC-p3C2

description:
lineage_profiles_wATAC.txt
C2-TARGp3_TCATCTCGAT_S218


title: Lineage_wATAC-p3E1

description:
lineage_profiles_wATAC.txt
E1-TARGp3_GCTCTCGCCT_S241


title: Lineage_wATAC-p3D6

description:
lineage_profiles_wATAC.txt
D6-TARGp3_CTAACTCCAA_S234


title: Lineage_wATAC-p3D3

description:
lineage_profiles_wATAC.txt
D3-TARGp3_CGGCGAGACC_S231


title: Lineage_wATAC-p3D8

description:
lineage_profiles_wATAC.txt
D8-TARGp3_CGATCATTAC_S236


title: Lineage_wATAC-p3D2

description:
lineage_profiles_wATAC.txt
D2-TARGp3_CAAGTACTGG_S230


title: Lineage_wATAC-p3D10

description:
lineage_profiles_wATAC.txt
D10-TARGp3_GGCTAATTAA_S238


title: Lineage_wATAC-p3B8

description:
lineage_profiles_wATAC.txt
B8-TARGp3_CCGTCGGAGG_S212


title: Lineage_wATAC-p3C9

description:
lineage_profiles_wATAC.txt
C9-TARGp3_GCAACTGGCA_S225


title: Lineage_wATAC-p3B4

description:
lineage_profiles_wATAC.txt
B4-TARGp3_GGAACGATGG_S208


title: Lineage_wATAC-p3C10

description:
lineage_profiles_wATAC.txt
C10-TARGp3_GATACCTAAG_S226


title: Lineage_wATAC-p3B7

description:
lineage_profiles_wATAC.txt
B7-TARGp3_TGATTCCTCA_S211


title: Lineage_wATAC-p3C4

description:
lineage_profiles_wATAC.txt
C4-TARGp3_CTGCTTCGAC_S220


title: Lineage_wATAC-p3B5

description:
lineage_profiles_wATAC.txt
B5-TARGp3_ACTCTCTCAA_S209


title: Lineage_wATAC-p3C12

description:
lineage_profiles_wATAC.txt
C12-TARGp3_CTCGGTCAAT_S228


title: Lineage_wATAC-p3B11

description:
lineage_profiles_wATAC.txt
B11-TARGp3_TTGAGTATCA_S215


title: Lineage_wATAC-p3B6

description:
lineage_profiles_wATAC.txt
B6-TARGp3_GTCGCTCAGT_S210


title: Lineage_wATAC-p3D4

description:
lineage_profiles_wATAC.txt
D4-TARGp3_GACCTCCGCC_S232


title: Lineage_wATAC-p3C7

description:
lineage_profiles_wATAC.txt
C7-TARGp3_TCGTAGGCTT_S223


title: Lineage_wATAC-p3D1

description:
lineage_profiles_wATAC.txt
D1-TARGp3_CGCCGCCTCC_S229


title: Lineage_wATAC-p3B9

description:
lineage_profiles_wATAC.txt
B9-TARGp3_AGCGTCAATG_S213


title: Lineage_wATAC-p3C1

description:
lineage_profiles_wATAC.txt
C1-TARGp3_GTTCCGACGA_S217


title: Lineage_wATAC-p3B12

description:
lineage_profiles_wATAC.txt
B12-TARGp3_TGAGGTAGAA_S216


title: Lineage_wATAC-p3B1

description:
lineage_profiles_wATAC.txt
B1-TARGp3_TTAACGTACC_S205


title: Lineage_wATAC-p3B3

description:
lineage_profiles_wATAC.txt
B3-TARGp3_GAACTGCATC_S207


title: Lineage_wATAC-p3B2

description:
lineage_profiles_wATAC.txt
B2-TARGp3_GGACTCATTG_S206


title: Lineage_wATAC-p3A3

description:
lineage_profiles_wATAC.txt
A3-TARGp3_GTTGACGGCC_S195


title: Lineage_wATAC-p3A4

description:
lineage_profiles_wATAC.txt
A4-TARGp3_CTCGTCTAGG_S196


title: Lineage_wATAC-p3A8

description:
lineage_profiles_wATAC.txt
A8-TARGp3_GATCAGTCAT_S200


title: Lineage_wATAC-p3A2

description:
lineage_profiles_wATAC.txt
A2-TARGp3_CGACTACCAA_S194


title: Lineage_wATAC-p3A6

description:
lineage_profiles_wATAC.txt
A6-TARGp3_TGATAGAACG_S198


title: Lineage_wATAC-p3A12

description:
lineage_profiles_wATAC.txt
A12-TARGp3_AACGGACCAA_S204


title: Lineage_wATAC-p3A10

description:
lineage_profiles_wATAC.txt
A10-TARGp3_CCAGGTCTAC_S202


title: Lineage_wATAC-p3A11

description:
lineage_profiles_wATAC.txt
A11-TARGp3_TTGGTCATAA_S203


title: Lineage_wATAC-p3A5

description:
lineage_profiles_wATAC.txt
A5-TARGp3_GCTCTAACGA_S197


title: Lineage_wATAC-p2H8

description:
lineage_profiles_wATAC.txt
H8-TARGp2_CCTATAAGCT_S188


title: Lineage_wATAC-p3A7

description:
lineage_profiles_wATAC.txt
A7-TARGp3_TTAGATTCCG_S199


title: Lineage_wATAC-p3A1

description:
lineage_profiles_wATAC.txt
A1-TARGp3_CTCGATGGAG_S193


title: Lineage_wATAC-p2H9

description:
lineage_profiles_wATAC.txt
H9-TARGp2_GATTGCAGAC_S189


title: Lineage_wATAC-p2H6

description:
lineage_profiles_wATAC.txt
H6-TARGp2_TCATCTAATC_S186


title: Lineage_wATAC-p2H4

description:
lineage_profiles_wATAC.txt
H4-TARGp2_TGCCAGATGG_S184


title: Lineage_wATAC-p2H12

description:
lineage_profiles_wATAC.txt
H12-TARGp2_CTGCAATCGC_S192


title: Lineage_wATAC-p3B10

description:
lineage_profiles_wATAC.txt
B10-TARGp3_CGAAGGACGA_S214


title: Lineage_wATAC-p2H1

description:
lineage_profiles_wATAC.txt
H1-TARGp2_TTCTACGCCA_S181


title: Lineage_wATAC-p2H2

description:
lineage_profiles_wATAC.txt
H2-TARGp2_TGGCCGCAAT_S182


title: Lineage_wATAC-p3A9

description:
lineage_profiles_wATAC.txt
A9-TARGp3_TCGATATTGA_S201


title: Lineage_wATAC-p2H5

description:
lineage_profiles_wATAC.txt
H5-TARGp2_AACTTATAAG_S185


title: Lineage_wATAC-p2H11

description:
lineage_profiles_wATAC.txt
H11-TARGp2_AAGATCCAAC_S191


title: Lineage_wATAC-p2H7

description:
lineage_profiles_wATAC.txt
H7-TARGp2_AGATCCTATA_S187


title: Lineage_wATAC-p2H3

description:
lineage_profiles_wATAC.txt
H3-TARGp2_CCAAGCTGAA_S183


title: Lineage_wATAC-p2G7

description:
lineage_profiles_wATAC.txt
G7-TARGp2_TCTATAAGGA_S175


title: Lineage_wATAC-p2G6

description:
lineage_profiles_wATAC.txt
G6-TARGp2_CATTATTACC_S174


title: Lineage_wATAC-p2H10

description:
lineage_profiles_wATAC.txt
H10-TARGp2_ATAAGAGGCG_S190


title: Lineage_wATAC-p2G8

description:
lineage_profiles_wATAC.txt
G8-TARGp2_TTGGAGTCGG_S176


title: Lineage_wATAC-p2G9

description:
lineage_profiles_wATAC.txt
G9-TARGp2_CAAGCTTGGC_S177


title: Lineage_wATAC-p2G5

description:
lineage_profiles_wATAC.txt
G5-TARGp2_TGATACGAGT_S173


title: Lineage_wATAC-p2G3

description:
lineage_profiles_wATAC.txt
G3-TARGp2_CAAGATTAAG_S171


title: Lineage_wATAC-p2G4

description:
lineage_profiles_wATAC.txt
G4-TARGp2_ACGCAACTCC_S172


title: Lineage_wATAC-p2G10

description:
lineage_profiles_wATAC.txt
G10-TARGp2_ATAGGATATG_S178


title: Lineage_wATAC-p2F9

description:
lineage_profiles_wATAC.txt
F9-TARGp2_AACCTAGCTT_S165


title: Lineage_wATAC-p2G11

description:
lineage_profiles_wATAC.txt
G11-TARGp2_TGGCGTAGGT_S179


title: Lineage_wATAC-p2F6

description:
lineage_profiles_wATAC.txt
F6-TARGp2_ACGAGGACCT_S162


title: Lineage_wATAC-p2F5

description:
lineage_profiles_wATAC.txt
F5-TARGp2_ACGTTCAACC_S161


title: Lineage_wATAC-p2F7

description:
lineage_profiles_wATAC.txt
F7-TARGp2_TATAACTTCC_S163


title: Lineage_wATAC-p2G12

description:
lineage_profiles_wATAC.txt
G12-TARGp2_ACTGAATTCC_S180


title: Lineage_wATAC-p2F8

description:
lineage_profiles_wATAC.txt
F8-TARGp2_AGGATTACCA_S164


title: Lineage_wATAC-p2F3

description:
lineage_profiles_wATAC.txt
F3-TARGp2_GGTCCAGGAG_S159


title: Lineage_wATAC-p2F12

description:
lineage_profiles_wATAC.txt
F12-TARGp2_CGAGCTGCCA_S168


title: Lineage_wATAC-p2F4

description:
lineage_profiles_wATAC.txt
F4-TARGp2_AACGAGGCTA_S160


title: Lineage_wATAC-p2F10

description:
lineage_profiles_wATAC.txt
F10-TARGp2_AGTCCGCGGA_S166


title: Lineage_wATAC-p2F2

description:
lineage_profiles_wATAC.txt
F2-TARGp2_CGTCCGTCCT_S158


title: Lineage_wATAC-p2F1

description:
lineage_profiles_wATAC.txt
F1-TARGp2_AACTACCGAC_S157


title: Lineage_wATAC-p2E6

description:
lineage_profiles_wATAC.txt
E6-TARGp2_CATGCATCTC_S150


title: Lineage_wATAC-p2G2

description:
lineage_profiles_wATAC.txt
G2-TARGp2_GTCATTGCGC_S170


title: Lineage_wATAC-p2E9

description:
lineage_profiles_wATAC.txt
E9-TARGp2_TCCGTCGCCA_S153


title: Lineage_wATAC-p2F11

description:
lineage_profiles_wATAC.txt
F11-TARGp2_ACTATCCGCA_S167


title: Lineage_wATAC-p2E8

description:
lineage_profiles_wATAC.txt
E8-TARGp2_ACCGTTACGA_S152


title: Lineage_wATAC-p2E5

description:
lineage_profiles_wATAC.txt
E5-TARGp2_CTCCGGTTCT_S149


title: Lineage_wATAC-p2E2

description:
lineage_profiles_wATAC.txt
E2-TARGp2_ACTATCTTGA_S146


title: Lineage_wATAC-p2E3

description:
lineage_profiles_wATAC.txt
E3-TARGp2_AGGTCAATTA_S147


title: Lineage_wATAC-p2E4

description:
lineage_profiles_wATAC.txt
E4-TARGp2_AAGCCGGCTG_S148


title: Lineage_wATAC-p2E7

description:
lineage_profiles_wATAC.txt
E7-TARGp2_TCCGGTAATC_S151


title: Lineage_wATAC-p2E1

description:
lineage_profiles_wATAC.txt
E1-TARGp2_GCTCTCGCCT_S145


title: Lineage_wATAC-p2D9

description:
lineage_profiles_wATAC.txt
D9-TARGp2_GACCTCTCTG_S141


title: Lineage_wATAC-p2E12

description:
lineage_profiles_wATAC.txt
E12-TARGp2_ACTTCCGAAT_S156


title: Lineage_wATAC-p2E10

description:
lineage_profiles_wATAC.txt
E10-TARGp2_GGCTATGACT_S154


title: Lineage_wATAC-p2D8

description:
lineage_profiles_wATAC.txt
D8-TARGp2_CGATCATTAC_S140


title: Lineage_wATAC-p2E11

description:
lineage_profiles_wATAC.txt
E11-TARGp2_TGGACTTGAC_S155


title: Lineage_wATAC-p2G1

description:
lineage_profiles_wATAC.txt
G1-TARGp2_GACCGTAGCA_S169


title: Lineage_wATAC-p2D5

description:
lineage_profiles_wATAC.txt
D5-TARGp2_TCTAGAACTA_S137


title: Lineage_wATAC-p2D6

description:
lineage_profiles_wATAC.txt
D6-TARGp2_CTAACTCCAA_S138


title: Lineage_wATAC-p2D4

description:
lineage_profiles_wATAC.txt
D4-TARGp2_GACCTCCGCC_S136


title: Lineage_wATAC-p2D1

description:
lineage_profiles_wATAC.txt
D1-TARGp2_CGCCGCCTCC_S133


title: Lineage_wATAC-p2D3

description:
lineage_profiles_wATAC.txt
D3-TARGp2_CGGCGAGACC_S135


title: Lineage_wATAC-p2D7

description:
lineage_profiles_wATAC.txt
D7-TARGp2_ACCAAGATCT_S139


title: Lineage_wATAC-p2D12

description:
lineage_profiles_wATAC.txt
D12-TARGp2_GATGATCGTA_S144


title: Lineage_wATAC-p2C8

description:
lineage_profiles_wATAC.txt
C8-TARGp2_AATTGCCTAC_S128


title: Lineage_wATAC-p2D11

description:
lineage_profiles_wATAC.txt
D11-TARGp2_CGAGTTAGAG_S143


title: Lineage_wATAC-p2C6

description:
lineage_profiles_wATAC.txt
C6-TARGp2_AGTTGCATCT_S126


title: Lineage_wATAC-p2C7

description:
lineage_profiles_wATAC.txt
C7-TARGp2_TCGTAGGCTT_S127


title: Lineage_wATAC-p2C3

description:
lineage_profiles_wATAC.txt
C3-TARGp2_GACTAGTCTA_S123


title: Lineage_wATAC-p2C1

description:
lineage_profiles_wATAC.txt
C1-TARGp2_GTTCCGACGA_S121


title: Lineage_wATAC-p2C9

description:
lineage_profiles_wATAC.txt
C9-TARGp2_GCAACTGGCA_S129


title: Lineage_wATAC-p2C5

description:
lineage_profiles_wATAC.txt
C5-TARGp2_CCTAGCGCCT_S125


title: Lineage_wATAC-p2B8

description:
lineage_profiles_wATAC.txt
B8-TARGp2_CCGTCGGAGG_S116


title: Lineage_wATAC-p2C10

description:
lineage_profiles_wATAC.txt
C10-TARGp2_GATACCTAAG_S130


title: Lineage_wATAC-p2C11

description:
lineage_profiles_wATAC.txt
C11-TARGp2_GGTAGGTCTC_S131


title: Lineage_wATAC-p2D2

description:
lineage_profiles_wATAC.txt
D2-TARGp2_CAAGTACTGG_S134


title: Lineage_wATAC-p2B9

description:
lineage_profiles_wATAC.txt
B9-TARGp2_AGCGTCAATG_S117


title: Lineage_wATAC-p2C12

description:
lineage_profiles_wATAC.txt
C12-TARGp2_CTCGGTCAAT_S132


title: Lineage_wATAC-p2D10

description:
lineage_profiles_wATAC.txt
D10-TARGp2_GGCTAATTAA_S142


title: Lineage_wATAC-p2B5

description:
lineage_profiles_wATAC.txt
B5-TARGp2_ACTCTCTCAA_S113


title: Lineage_wATAC-p2B4

description:
lineage_profiles_wATAC.txt
B4-TARGp2_GGAACGATGG_S112


title: Lineage_wATAC-p2C4

description:
lineage_profiles_wATAC.txt
C4-TARGp2_CTGCTTCGAC_S124


title: Lineage_wATAC-p2B7

description:
lineage_profiles_wATAC.txt
B7-TARGp2_TGATTCCTCA_S115


title: Lineage_wATAC-p2B3

description:
lineage_profiles_wATAC.txt
B3-TARGp2_GAACTGCATC_S111


title: Lineage_wATAC-p2B6

description:
lineage_profiles_wATAC.txt
B6-TARGp2_GTCGCTCAGT_S114


title: Lineage_wATAC-p2B2

description:
lineage_profiles_wATAC.txt
B2-TARGp2_GGACTCATTG_S110


title: Lineage_wATAC-p2C2

description:
lineage_profiles_wATAC.txt
C2-TARGp2_TCATCTCGAT_S122


title: Lineage_wATAC-p2B1

description:
lineage_profiles_wATAC.txt
B1-TARGp2_TTAACGTACC_S109


title: Lineage_wATAC-p2B11

description:
lineage_profiles_wATAC.txt
B11-TARGp2_TTGAGTATCA_S119


title: Lineage_wATAC-p2B12

description:
lineage_profiles_wATAC.txt
B12-TARGp2_TGAGGTAGAA_S120


title: Lineage_wATAC-p2A9

description:
lineage_profiles_wATAC.txt
A9-TARGp2_TCGATATTGA_S105


title: Lineage_wATAC-p2A5

description:
lineage_profiles_wATAC.txt
A5-TARGp2_GCTCTAACGA_S101


title: Lineage_wATAC-p2A7

description:
lineage_profiles_wATAC.txt
A7-TARGp2_TTAGATTCCG_S103


title: Lineage_wATAC-p2A8

description:
lineage_profiles_wATAC.txt
A8-TARGp2_GATCAGTCAT_S104


title: Lineage_wATAC-p2A6

description:
lineage_profiles_wATAC.txt
A6-TARGp2_TGATAGAACG_S102


title: Lineage_wATAC-p2A3

description:
lineage_profiles_wATAC.txt
A3-TARGp2_GTTGACGGCC_S99


title: Lineage_wATAC-p2A2

description:
lineage_profiles_wATAC.txt
A2-TARGp2_CGACTACCAA_S98


title: Lineage_wATAC-p2A1

description:
lineage_profiles_wATAC.txt
A1-TARGp2_CTCGATGGAG_S97


title: Lineage_wATAC-p2A11

description:
lineage_profiles_wATAC.txt
A11-TARGp2_TTGGTCATAA_S107


title: Lineage_wATAC-p2A12

description:
lineage_profiles_wATAC.txt
A12-TARGp2_AACGGACCAA_S108


title: Lineage_wATAC-p2A10

description:
lineage_profiles_wATAC.txt
A10-TARGp2_CCAGGTCTAC_S106


title: Lineage_wATAC-p11H8

description:
lineage_profiles_wATAC.txt
H8-TARGp11_CCTATAAGCT_S284


title: Lineage_wATAC-p11H6

description:
lineage_profiles_wATAC.txt
H6-TARGp11_TCATCTAATC_S282


title: Lineage_wATAC-p11H9

description:
lineage_profiles_wATAC.txt
H9-TARGp11_GATTGCAGAC_S285


title: Lineage_wATAC-p11H5

description:
lineage_profiles_wATAC.txt
H5-TARGp11_AACTTATAAG_S281


title: Lineage_wATAC-p11H4

description:
lineage_profiles_wATAC.txt
H4-TARGp11_TGCCAGATGG_S280


title: Lineage_wATAC-p11H7

description:
lineage_profiles_wATAC.txt
H7-TARGp11_AGATCCTATA_S283


title: Lineage_wATAC-p11H2

description:
lineage_profiles_wATAC.txt
H2-TARGp11_TGGCCGCAAT_S278


title: Lineage_wATAC-p11H1

description:
lineage_profiles_wATAC.txt
H1-TARGp11_TTCTACGCCA_S277


title: Lineage_wATAC-p11H12

description:
lineage_profiles_wATAC.txt
H12-TARGp11_CTGCAATCGC_S288


title: Lineage_wATAC-p11H11

description:
lineage_profiles_wATAC.txt
H11-TARGp11_AAGATCCAAC_S287


title: Lineage_wATAC-p11H10

description:
lineage_profiles_wATAC.txt
H10-TARGp11_ATAAGAGGCG_S286


title: Lineage_wATAC-p11G9

description:
lineage_profiles_wATAC.txt
G9-TARGp11_CAAGCTTGGC_S273


title: Lineage_wATAC-p2B10

description:
lineage_profiles_wATAC.txt
B10-TARGp2_CGAAGGACGA_S118


title: Lineage_wATAC-p2A4

description:
lineage_profiles_wATAC.txt
A4-TARGp2_CTCGTCTAGG_S100


title: Lineage_wATAC-p11G8

description:
lineage_profiles_wATAC.txt
G8-TARGp11_TTGGAGTCGG_S272


title: Lineage_wATAC-p11G7

description:
lineage_profiles_wATAC.txt
G7-TARGp11_TCTATAAGGA_S271


title: Lineage_wATAC-p11G6

description:
lineage_profiles_wATAC.txt
G6-TARGp11_CATTATTACC_S270


title: Lineage_wATAC-p11G5

description:
lineage_profiles_wATAC.txt
G5-TARGp11_TGATACGAGT_S269


title: Lineage_wATAC-p11G11

description:
lineage_profiles_wATAC.txt
G11-TARGp11_TGGCGTAGGT_S275


title: Lineage_wATAC-p11F9

description:
lineage_profiles_wATAC.txt
F9-TARGp11_AACCTAGCTT_S261


title: Lineage_wATAC-p11F4

description:
lineage_profiles_wATAC.txt
F4-TARGp11_AACGAGGCTA_S256


title: Lineage_wATAC-p11G3

description:
lineage_profiles_wATAC.txt
G3-TARGp11_CAAGATTAAG_S267


title: Lineage_wATAC-p11F6

description:
lineage_profiles_wATAC.txt
F6-TARGp11_ACGAGGACCT_S258


title: Lineage_wATAC-p11F12

description:
lineage_profiles_wATAC.txt
F12-TARGp11_CGAGCTGCCA_S264


title: Lineage_wATAC-p11F8

description:
lineage_profiles_wATAC.txt
F8-TARGp11_AGGATTACCA_S260


title: Lineage_wATAC-p11H3

description:
lineage_profiles_wATAC.txt
H3-TARGp11_CCAAGCTGAA_S279


title: Lineage_wATAC-p11F11

description:
lineage_profiles_wATAC.txt
F11-TARGp11_ACTATCCGCA_S263


title: Lineage_wATAC-p11G4

description:
lineage_profiles_wATAC.txt
G4-TARGp11_ACGCAACTCC_S268


title: Lineage_wATAC-p11F7

description:
lineage_profiles_wATAC.txt
F7-TARGp11_TATAACTTCC_S259


title: Lineage_wATAC-p11G2

description:
lineage_profiles_wATAC.txt
G2-TARGp11_GTCATTGCGC_S266


title: Lineage_wATAC-p11G1

description:
lineage_profiles_wATAC.txt
G1-TARGp11_GACCGTAGCA_S265


title: Lineage_wATAC-p11G10

description:
lineage_profiles_wATAC.txt
G10-TARGp11_ATAGGATATG_S274


title: Lineage_wATAC-p11G12

description:
lineage_profiles_wATAC.txt
G12-TARGp11_ACTGAATTCC_S276


title: Lineage_wATAC-p11F5

description:
lineage_profiles_wATAC.txt
F5-TARGp11_ACGTTCAACC_S257


title: Lineage_wATAC-p11E5

description:
lineage_profiles_wATAC.txt
E5-TARGp11_CTCCGGTTCT_S245


title: Lineage_wATAC-p11F2

description:
lineage_profiles_wATAC.txt
F2-TARGp11_CGTCCGTCCT_S254


title: Lineage_wATAC-p11F1

description:
lineage_profiles_wATAC.txt
F1-TARGp11_AACTACCGAC_S253


title: Lineage_wATAC-p11E4

description:
lineage_profiles_wATAC.txt
E4-TARGp11_AAGCCGGCTG_S244


title: Lineage_wATAC-p11E8

description:
lineage_profiles_wATAC.txt
E8-TARGp11_ACCGTTACGA_S248


title: Lineage_wATAC-p11E9

description:
lineage_profiles_wATAC.txt
E9-TARGp11_TCCGTCGCCA_S249


title: Lineage_wATAC-p11E1

description:
lineage_profiles_wATAC.txt
E1-TARGp11_GCTCTCGCCT_S241


title: Lineage_wATAC-p11E3

description:
lineage_profiles_wATAC.txt
E3-TARGp11_AGGTCAATTA_S243


title: Lineage_wATAC-p11F10

description:
lineage_profiles_wATAC.txt
F10-TARGp11_AGTCCGCGGA_S262


title: Lineage_wATAC-p11E10

description:
lineage_profiles_wATAC.txt
E10-TARGp11_GGCTATGACT_S250


title: Lineage_wATAC-p11D9

description:
lineage_profiles_wATAC.txt
D9-TARGp11_GACCTCTCTG_S237


title: Lineage_wATAC-p11F3

description:
lineage_profiles_wATAC.txt
F3-TARGp11_GGTCCAGGAG_S255


title: Lineage_wATAC-p11E7

description:
lineage_profiles_wATAC.txt
E7-TARGp11_TCCGGTAATC_S247


title: Lineage_wATAC-p11E2

description:
lineage_profiles_wATAC.txt
E2-TARGp11_ACTATCTTGA_S242


title: Lineage_wATAC-p11D5

description:
lineage_profiles_wATAC.txt
D5-TARGp11_TCTAGAACTA_S233


title: Lineage_wATAC-p11E12

description:
lineage_profiles_wATAC.txt
E12-TARGp11_ACTTCCGAAT_S252


title: Lineage_wATAC-p11E11

description:
lineage_profiles_wATAC.txt
E11-TARGp11_TGGACTTGAC_S251


title: Lineage_wATAC-p11D2

description:
lineage_profiles_wATAC.txt
D2-TARGp11_CAAGTACTGG_S230


title: Lineage_wATAC-p11E6

description:
lineage_profiles_wATAC.txt
E6-TARGp11_CATGCATCTC_S246


title: Lineage_wATAC-p11C9

description:
lineage_profiles_wATAC.txt
C9-TARGp11_GCAACTGGCA_S225


title: Lineage_wATAC-p11C8

description:
lineage_profiles_wATAC.txt
C8-TARGp11_AATTGCCTAC_S224


title: Lineage_wATAC-p11D1

description:
lineage_profiles_wATAC.txt
D1-TARGp11_CGCCGCCTCC_S229


title: Lineage_wATAC-p11D4

description:
lineage_profiles_wATAC.txt
D4-TARGp11_GACCTCCGCC_S232


title: Lineage_wATAC-p11D12

description:
lineage_profiles_wATAC.txt
D12-TARGp11_GATGATCGTA_S240


title: Lineage_wATAC-p11C7

description:
lineage_profiles_wATAC.txt
C7-TARGp11_TCGTAGGCTT_S223


title: Lineage_wATAC-p11D3

description:
lineage_profiles_wATAC.txt
D3-TARGp11_CGGCGAGACC_S231


title: Lineage_wATAC-p11D10

description:
lineage_profiles_wATAC.txt
D10-TARGp11_GGCTAATTAA_S238


title: Lineage_wATAC-p11C6

description:
lineage_profiles_wATAC.txt
C6-TARGp11_AGTTGCATCT_S222


title: Lineage_wATAC-p11D11

description:
lineage_profiles_wATAC.txt
D11-TARGp11_CGAGTTAGAG_S239


title: Lineage_wATAC-p11D8

description:
lineage_profiles_wATAC.txt
D8-TARGp11_CGATCATTAC_S236


title: Lineage_wATAC-p11D7

description:
lineage_profiles_wATAC.txt
D7-TARGp11_ACCAAGATCT_S235


title: Lineage_wATAC-p11C4

description:
lineage_profiles_wATAC.txt
C4-TARGp11_CTGCTTCGAC_S220


title: Lineage_wATAC-p11C3

description:
lineage_profiles_wATAC.txt
C3-TARGp11_GACTAGTCTA_S219


title: Lineage_wATAC-p11C2

description:
lineage_profiles_wATAC.txt
C2-TARGp11_TCATCTCGAT_S218


title: Lineage_wATAC-p11C11

description:
lineage_profiles_wATAC.txt
C11-TARGp11_GGTAGGTCTC_S227


title: Lineage_wATAC-p11B7

description:
lineage_profiles_wATAC.txt
B7-TARGp11_TGATTCCTCA_S211


title: Lineage_wATAC-p11B9

description:
lineage_profiles_wATAC.txt
B9-TARGp11_AGCGTCAATG_S213


title: Lineage_wATAC-p11B8

description:
lineage_profiles_wATAC.txt
B8-TARGp11_CCGTCGGAGG_S212


title: Lineage_wATAC-p11B5

description:
lineage_profiles_wATAC.txt
B5-TARGp11_ACTCTCTCAA_S209


title: Lineage_wATAC-p11B6

description:
lineage_profiles_wATAC.txt
B6-TARGp11_GTCGCTCAGT_S210


title: Lineage_wATAC-p11B2

description:
lineage_profiles_wATAC.txt
B2-TARGp11_GGACTCATTG_S206


title: Lineage_wATAC-p11C12

description:
lineage_profiles_wATAC.txt
C12-TARGp11_CTCGGTCAAT_S228


title: Lineage_wATAC-p11B4

description:
lineage_profiles_wATAC.txt
B4-TARGp11_GGAACGATGG_S208


title: Lineage_wATAC-p11D6

description:
lineage_profiles_wATAC.txt
D6-TARGp11_CTAACTCCAA_S234


title: Lineage_wATAC-p11B1

description:
lineage_profiles_wATAC.txt
B1-TARGp11_TTAACGTACC_S205


title: Lineage_wATAC-p11C5

description:
lineage_profiles_wATAC.txt
C5-TARGp11_CCTAGCGCCT_S221


title: Lineage_wATAC-p11B12

description:
lineage_profiles_wATAC.txt
B12-TARGp11_TGAGGTAGAA_S216


title: Lineage_wATAC-p11B11

description:
lineage_profiles_wATAC.txt
B11-TARGp11_TTGAGTATCA_S215


title: Lineage_wATAC-p11A7

description:
lineage_profiles_wATAC.txt
A7-TARGp11_TTAGATTCCG_S199


title: Lineage_wATAC-p11A9

description:
lineage_profiles_wATAC.txt
A9-TARGp11_TCGATATTGA_S201


title: Lineage_wATAC-p11B10

description:
lineage_profiles_wATAC.txt
B10-TARGp11_CGAAGGACGA_S214


title: Lineage_wATAC-p11C1

description:
lineage_profiles_wATAC.txt
C1-TARGp11_GTTCCGACGA_S217


title: Lineage_wATAC-p11A8

description:
lineage_profiles_wATAC.txt
A8-TARGp11_GATCAGTCAT_S200


title: Lineage_wATAC-p11A6

description:
lineage_profiles_wATAC.txt
A6-TARGp11_TGATAGAACG_S198


title: Lineage_wATAC-p11A4

description:
lineage_profiles_wATAC.txt
A4-TARGp11_CTCGTCTAGG_S196


title: Lineage_wATAC-p11C10

description:
lineage_profiles_wATAC.txt
C10-TARGp11_GATACCTAAG_S226


title: Lineage_wATAC-p11A5

description:
lineage_profiles_wATAC.txt
A5-TARGp11_GCTCTAACGA_S197


title: Lineage_wATAC-p11A3

description:
lineage_profiles_wATAC.txt
A3-TARGp11_GTTGACGGCC_S195


title: Lineage_wATAC-p11A12

description:
lineage_profiles_wATAC.txt
A12-TARGp11_AACGGACCAA_S204


title: Lineage_wATAC-p10H9

description:
lineage_profiles_wATAC.txt
H9-TARGp10_GATTGCAGAC_S189


title: Lineage_wATAC-p11A11

description:
lineage_profiles_wATAC.txt
A11-TARGp11_TTGGTCATAA_S203


title: Lineage_wATAC-p11A10

description:
lineage_profiles_wATAC.txt
A10-TARGp11_CCAGGTCTAC_S202


title: Lineage_wATAC-p10H8

description:
lineage_profiles_wATAC.txt
H8-TARGp10_CCTATAAGCT_S188


title: Lineage_wATAC-p10H7

description:
lineage_profiles_wATAC.txt
H7-TARGp10_AGATCCTATA_S187


title: Lineage_wATAC-p10H5

description:
lineage_profiles_wATAC.txt
H5-TARGp10_AACTTATAAG_S185


title: Lineage_wATAC-p11A1

description:
lineage_profiles_wATAC.txt
A1-TARGp11_CTCGATGGAG_S193


title: Lineage_wATAC-p11A2

description:
lineage_profiles_wATAC.txt
A2-TARGp11_CGACTACCAA_S194


title: Lineage_wATAC-p10H4

description:
lineage_profiles_wATAC.txt
H4-TARGp10_TGCCAGATGG_S184


title: Lineage_wATAC-p10H3

description:
lineage_profiles_wATAC.txt
H3-TARGp10_CCAAGCTGAA_S183


title: Lineage_wATAC-p10H12

description:
lineage_profiles_wATAC.txt
H12-TARGp10_CTGCAATCGC_S192


title: Lineage_wATAC-p11B3

description:
lineage_profiles_wATAC.txt
B3-TARGp11_GAACTGCATC_S207


title: Lineage_wATAC-p10H1

description:
lineage_profiles_wATAC.txt
H1-TARGp10_TTCTACGCCA_S181


title: Lineage_wATAC-p10H10

description:
lineage_profiles_wATAC.txt
H10-TARGp10_ATAAGAGGCG_S190


title: Lineage_wATAC-p10H2

description:
lineage_profiles_wATAC.txt
H2-TARGp10_TGGCCGCAAT_S182


title: Lineage_wATAC-p10G9

description:
lineage_profiles_wATAC.txt
G9-TARGp10_CAAGCTTGGC_S177


title: Lineage_wATAC-p10G6

description:
lineage_profiles_wATAC.txt
G6-TARGp10_CATTATTACC_S174


title: Lineage_wATAC-p10G7

description:
lineage_profiles_wATAC.txt
G7-TARGp10_TCTATAAGGA_S175


title: Lineage_wATAC-p10G5

description:
lineage_profiles_wATAC.txt
G5-TARGp10_TGATACGAGT_S173


title: Lineage_wATAC-p10G4

description:
lineage_profiles_wATAC.txt
G4-TARGp10_ACGCAACTCC_S172


title: Lineage_wATAC-p10G3

description:
lineage_profiles_wATAC.txt
G3-TARGp10_CAAGATTAAG_S171


title: Lineage_wATAC-p10G2

description:
lineage_profiles_wATAC.txt
G2-TARGp10_GTCATTGCGC_S170


title: Lineage_wATAC-p10H11

description:
lineage_profiles_wATAC.txt
H11-TARGp10_AAGATCCAAC_S191


title: Lineage_wATAC-p10G10

description:
lineage_profiles_wATAC.txt
G10-TARGp10_ATAGGATATG_S178


title: Lineage_wATAC-p10G1

description:
lineage_profiles_wATAC.txt
G1-TARGp10_GACCGTAGCA_S169


title: Lineage_wATAC-p10H6

description:
lineage_profiles_wATAC.txt
H6-TARGp10_TCATCTAATC_S186


title: Lineage_wATAC-p10G12

description:
lineage_profiles_wATAC.txt
G12-TARGp10_ACTGAATTCC_S180


title: Lineage_wATAC-p10F9

description:
lineage_profiles_wATAC.txt
F9-TARGp10_AACCTAGCTT_S165


title: Lineage_wATAC-p10F7

description:
lineage_profiles_wATAC.txt
F7-TARGp10_TATAACTTCC_S163


title: Lineage_wATAC-p10G11

description:
lineage_profiles_wATAC.txt
G11-TARGp10_TGGCGTAGGT_S179


title: Lineage_wATAC-p10F8

description:
lineage_profiles_wATAC.txt
F8-TARGp10_AGGATTACCA_S164


title: Lineage_wATAC-p10F5

description:
lineage_profiles_wATAC.txt
F5-TARGp10_ACGTTCAACC_S161


title: Lineage_wATAC-p10F12

description:
lineage_profiles_wATAC.txt
F12-TARGp10_CGAGCTGCCA_S168


title: Lineage_wATAC-p10F2

description:
lineage_profiles_wATAC.txt
F2-TARGp10_CGTCCGTCCT_S158


title: Lineage_wATAC-p10F6

description:
lineage_profiles_wATAC.txt
F6-TARGp10_ACGAGGACCT_S162


title: Lineage_wATAC-p10F1

description:
lineage_profiles_wATAC.txt
F1-TARGp10_AACTACCGAC_S157


title: Lineage_wATAC-p10F4

description:
lineage_profiles_wATAC.txt
F4-TARGp10_AACGAGGCTA_S160


title: Lineage_wATAC-p10F11

description:
lineage_profiles_wATAC.txt
F11-TARGp10_ACTATCCGCA_S167


title: Lineage_wATAC-p10F3

description:
lineage_profiles_wATAC.txt
F3-TARGp10_GGTCCAGGAG_S159


title: Lineage_wATAC-p10F10

description:
lineage_profiles_wATAC.txt
F10-TARGp10_AGTCCGCGGA_S166


title: Lineage_wATAC-p10E9

description:
lineage_profiles_wATAC.txt
E9-TARGp10_TCCGTCGCCA_S153


title: Lineage_wATAC-p10E7

description:
lineage_profiles_wATAC.txt
E7-TARGp10_TCCGGTAATC_S151


title: Lineage_wATAC-p10G8

description:
lineage_profiles_wATAC.txt
G8-TARGp10_TTGGAGTCGG_S176


title: Lineage_wATAC-p10E8

description:
lineage_profiles_wATAC.txt
E8-TARGp10_ACCGTTACGA_S152


title: Lineage_wATAC-p10E5

description:
lineage_profiles_wATAC.txt
E5-TARGp10_CTCCGGTTCT_S149


title: Lineage_wATAC-p10E6

description:
lineage_profiles_wATAC.txt
E6-TARGp10_CATGCATCTC_S150


title: Lineage_wATAC-p10E4

description:
lineage_profiles_wATAC.txt
E4-TARGp10_AAGCCGGCTG_S148


title: Lineage_wATAC-p10E11

description:
lineage_profiles_wATAC.txt
E11-TARGp10_TGGACTTGAC_S155


title: Lineage_wATAC-p10E2

description:
lineage_profiles_wATAC.txt
E2-TARGp10_ACTATCTTGA_S146


title: Lineage_wATAC-p10E10

description:
lineage_profiles_wATAC.txt
E10-TARGp10_GGCTATGACT_S154


title: Lineage_wATAC-p10E1

description:
lineage_profiles_wATAC.txt
E1-TARGp10_GCTCTCGCCT_S145


title: Lineage_wATAC-p10E3

description:
lineage_profiles_wATAC.txt
E3-TARGp10_AGGTCAATTA_S147


title: Lineage_wATAC-p10D8

description:
lineage_profiles_wATAC.txt
D8-TARGp10_CGATCATTAC_S140


title: Lineage_wATAC-p10D6

description:
lineage_profiles_wATAC.txt
D6-TARGp10_CTAACTCCAA_S138


title: Lineage_wATAC-p10D5

description:
lineage_profiles_wATAC.txt
D5-TARGp10_TCTAGAACTA_S137


title: Lineage_wATAC-p10D2

description:
lineage_profiles_wATAC.txt
D2-TARGp10_CAAGTACTGG_S134


title: Lineage_wATAC-p10E12

description:
lineage_profiles_wATAC.txt
E12-TARGp10_ACTTCCGAAT_S156


title: Lineage_wATAC-p10D9

description:
lineage_profiles_wATAC.txt
D9-TARGp10_GACCTCTCTG_S141


title: Lineage_wATAC-p10D3

description:
lineage_profiles_wATAC.txt
D3-TARGp10_CGGCGAGACC_S135


title: Lineage_wATAC-p10D7

description:
lineage_profiles_wATAC.txt
D7-TARGp10_ACCAAGATCT_S139


title: Lineage_wATAC-p10D10

description:
lineage_profiles_wATAC.txt
D10-TARGp10_GGCTAATTAA_S142


title: Lineage_wATAC-p10C8

description:
lineage_profiles_wATAC.txt
C8-TARGp10_AATTGCCTAC_S128


title: Lineage_wATAC-p10D11

description:
lineage_profiles_wATAC.txt
D11-TARGp10_CGAGTTAGAG_S143


title: Lineage_wATAC-p10D12

description:
lineage_profiles_wATAC.txt
D12-TARGp10_GATGATCGTA_S144


title: Lineage_wATAC-p10C9

description:
lineage_profiles_wATAC.txt
C9-TARGp10_GCAACTGGCA_S129


title: Lineage_wATAC-p10D1

description:
lineage_profiles_wATAC.txt
D1-TARGp10_CGCCGCCTCC_S133


title: Lineage_wATAC-p10C7

description:
lineage_profiles_wATAC.txt
C7-TARGp10_TCGTAGGCTT_S127


title: Lineage_wATAC-p10D4

description:
lineage_profiles_wATAC.txt
D4-TARGp10_GACCTCCGCC_S136


title: Lineage_wATAC-p10C3

description:
lineage_profiles_wATAC.txt
C3-TARGp10_GACTAGTCTA_S123


title: Lineage_wATAC-p10C2

description:
lineage_profiles_wATAC.txt
C2-TARGp10_TCATCTCGAT_S122


title: Lineage_wATAC-p10C5

description:
lineage_profiles_wATAC.txt
C5-TARGp10_CCTAGCGCCT_S125


title: Lineage_wATAC-p10C12

description:
lineage_profiles_wATAC.txt
C12-TARGp10_CTCGGTCAAT_S132


title: Lineage_wATAC-p10C10

description:
lineage_profiles_wATAC.txt
C10-TARGp10_GATACCTAAG_S130


title: Lineage_wATAC-p10C11

description:
lineage_profiles_wATAC.txt
C11-TARGp10_GGTAGGTCTC_S131


title: Lineage_wATAC-p10C1

description:
lineage_profiles_wATAC.txt
C1-TARGp10_GTTCCGACGA_S121


title: Lineage_wATAC-p10C6

description:
lineage_profiles_wATAC.txt
C6-TARGp10_AGTTGCATCT_S126


title: Lineage_wATAC-p10B9

description:
lineage_profiles_wATAC.txt
B9-TARGp10_AGCGTCAATG_S117


title: Lineage_wATAC-p10B8

description:
lineage_profiles_wATAC.txt
B8-TARGp10_CCGTCGGAGG_S116


title: Lineage_wATAC-p10B7

description:
lineage_profiles_wATAC.txt
B7-TARGp10_TGATTCCTCA_S115


title: Lineage_wATAC-p10C4

description:
lineage_profiles_wATAC.txt
C4-TARGp10_CTGCTTCGAC_S124


title: resFOP-LPS 12hr-1

type: RNA

city: Kyoto

first: Hirotsugu

last: Maekawa

address: 54 Shogoin-Kawaharacho, Sakyo-ku

country: Japan

institute: Kyoto Universiy

description: Gene expression data from resFOP-ML stimulated by LPS for 12hr

hyb_protocol: The GeneChip Hybridization Wash and Stain Kit (Affymetrix) were used according to the manufacturer’s protocol.

scan_protocol: Arrays were scanned using GeneChip Scanner 3000 7G

data_processing: Analysis was performed using GeneSpring 14.9 software. Data were normalized with the RMA16 algorithm.

label: biotin

source_name: resFOP-ML stimulated by LPS for 12hr

label_protocol: all RNA samples were processed using the Ambion WT Expression Kit (Life Technologies), the GeneChip WT Terminal Labeling and Controls Kit (Affymetrix)

growth_protocol: FOP- and resFOP- iPSCs were differentiated to monocytes. Then, monocyte cell lines were established by immortalizing monocytes.

extract_protocol: RNA was extracted using an RNeasy Mini Kit (QIAGEN) according to the manufacture's instruction

treatment_protocol: Monocyte cell lines were sitmulated by LPS or Activin-A

tag: genotype

value: resFOP-ML

value: Monocyte


title: FOP-CTRL-1

description: Gene expression data from FOP-ML without stimulation

source_name: FOP-ML without stimulation

value: FOP-ML


title: resFOP-LPS 24hr-1

description: Gene expression data from resFOP-ML stimulated by LPS for 24hr

source_name: resFOP-ML stimulated by LPS for 24hr


title: resFOP-LPS 4hr-1

description: Gene expression data from resFOP-ML stimulated by LPS for 4hr

source_name: resFOP-ML stimulated by LPS for 4hr


title: resFOP-CTRL-2

description: Gene expression data from resFOP-ML without stimulation

source_name: resFOP-ML without stimulation


title: resFOP-LPS 24hr-3


title: resFOP-ActA 12hr-1

description: Gene expression data from resFOP-ML stimulated by Activin-A for 12hr


title: resFOP-ActA 24hr-1

description: Gene expression data from resFOP-ML stimulated by Activin-A for 24hr


title: resFOP-LPS 12hr-3


title: Lineage_wATAC-p10B6

description:
lineage_profiles_wATAC.txt
B6-TARGp10_GTCGCTCAGT_S114


title: resFOP-LPS 4hr-3


title: Lineage_wATAC-p10B5

description:
lineage_profiles_wATAC.txt
B5-TARGp10_ACTCTCTCAA_S113


title: resFOP-ActA 4hr-1

description: Gene expression data from resFOP-ML stimulated by Activin-A for 4hr


title: Lineage_wATAC-p10B4

description:
lineage_profiles_wATAC.txt
B4-TARGp10_GGAACGATGG_S112


title: FOP-CTRL-3


title: resFOP-ActA 12hr-3

source_name: resFOP-ML stimulated by Activin-A for 12hr


title: Lineage_wATAC-p10B3

description:
lineage_profiles_wATAC.txt
B3-TARGp10_GAACTGCATC_S111


title: resFOP-CTRL-3


title: Lineage_wATAC-p10B2

description:
lineage_profiles_wATAC.txt
B2-TARGp10_GGACTCATTG_S110


title: Lineage_wATAC-p10B12

description:
lineage_profiles_wATAC.txt
B12-TARGp10_TGAGGTAGAA_S120


title: Lineage_wATAC-p10A9

description:
lineage_profiles_wATAC.txt
A9-TARGp10_TCGATATTGA_S105


title: Lineage_wATAC-p10B10

description:
lineage_profiles_wATAC.txt
B10-TARGp10_CGAAGGACGA_S118


title: resFOP-ActA 24hr-3

source_name: resFOP-ML stimulated by Activin-A for 24hr


title: resFOP-LPS 4hr-2


title: resFOP-LPS 12hr-2


title: FOP-CTRL-2


title: resFOP-ActA 4hr-3

source_name: resFOP-ML stimulated by Activin-A for 4hr


title: Lineage_wATAC-p10A8

description:
lineage_profiles_wATAC.txt
A8-TARGp10_GATCAGTCAT_S104


title: resFOP-LPS 24hr-2


title: Lineage_wATAC-p10A7

description:
lineage_profiles_wATAC.txt
A7-TARGp10_TTAGATTCCG_S103


title: resFOP-ActA 12hr-2


title: Lineage_wATAC-p10A4

description:
lineage_profiles_wATAC.txt
A4-TARGp10_CTCGTCTAGG_S100


title: resFOP-ActA 24hr-2


title: Lineage_wATAC-p10B1

description:
lineage_profiles_wATAC.txt
B1-TARGp10_TTAACGTACC_S109


title: Lineage_wATAC-p10A6

description:
lineage_profiles_wATAC.txt
A6-TARGp10_TGATAGAACG_S102


title: Lineage_wATAC-p10A3

description:
lineage_profiles_wATAC.txt
A3-TARGp10_GTTGACGGCC_S99


title: Lineage_wATAC-p10B11

description:
lineage_profiles_wATAC.txt
B11-TARGp10_TTGAGTATCA_S119


title: FOP-LPS 24hr-3

description: Gene expression data from FOP-ML stimulated by LPS for 24hr

source_name: FOP-ML stimulated by LPS for 24hr


title: resFOP-CTRL-1

description: Gene expression data from resFOP-ML without stimulation


title: FOP-LPS 4hr-3

description: Gene expression data from FOP-ML stimulated by LPS for 4hr

source_name: FOP-ML stimulated by LPS for 4hr


title: FOP-LPS 4hr-2


title: FOP-ActA 4hr-3

description: Gene expression data from FOP-ML stimulated by Activin-A for 4hr

source_name: FOP-ML stimulated by Activin-A for 4hr


title: FOP-LPS 24hr-2


title: resFOP-ActA 4hr-2

description: Gene expression data from resFOP-ML stimulated by Activin-A for 4hr


title: FOP-LPS 12hr-2

description: Gene expression data from FOP-ML stimulated by LPS for 12hr

source_name: FOP-ML stimulated by LPS for 12hr


title: Lineage_wATAC-p10A1

description:
lineage_profiles_wATAC.txt
A1-TARGp10_CTCGATGGAG_S97


title: Lineage_wATAC-p10A2

description:
lineage_profiles_wATAC.txt
A2-TARGp10_CGACTACCAA_S98


title: Lineage_wATAC-p10A11

description:
lineage_profiles_wATAC.txt
A11-TARGp10_TTGGTCATAA_S107


title: FOP-ActA 24hr-3

description: Gene expression data from FOP-ML stimulated by Activin-A for 24hr

source_name: FOP-ML stimulated by Activin-A for 24hr


title: FOP-LPS 12hr-3


title: Lineage_wATAC-p10A12

description:
lineage_profiles_wATAC.txt
A12-TARGp10_AACGGACCAA_S108


title: Lineage_wATAC-p1H9

description:
lineage_profiles_wATAC.txt
H9-TARGp1_GATTGCAGAC_S93


title: Lineage_wATAC-p1H8

description:
lineage_profiles_wATAC.txt
H8-TARGp1_CCTATAAGCT_S92


title: Lineage_wATAC-p10A5

description:
lineage_profiles_wATAC.txt
A5-TARGp10_GCTCTAACGA_S101


title: Lineage_wATAC-p1H7

description:
lineage_profiles_wATAC.txt
H7-TARGp1_AGATCCTATA_S91


title: FOP-ActA 12hr-3

description: Gene expression data from FOP-ML stimulated by Activin-A for 12hr

source_name: FOP-ML stimulated by Activin-A for 12hr


title: Lineage_wATAC-p1H6

description:
lineage_profiles_wATAC.txt
H6-TARGp1_TCATCTAATC_S90


title: Lineage_wATAC-p1H4

description:
lineage_profiles_wATAC.txt
H4-TARGp1_TGCCAGATGG_S88


title: Lineage_wATAC-p1H5

description:
lineage_profiles_wATAC.txt
H5-TARGp1_AACTTATAAG_S89


title: FOP-ActA 4hr-2


title: FOP-ActA 12hr-2


title: Lineage_wATAC-p1H1

description:
lineage_profiles_wATAC.txt
H1-TARGp1_TTCTACGCCA_S85


title: Lineage_wATAC-p1H3

description:
lineage_profiles_wATAC.txt
H3-TARGp1_CCAAGCTGAA_S87


title: FOP-LPS 12hr-1


title: FOP-LPS 4hr-1

description: Gene expression data from FOP-ML stimulated by LPS for 4hr


title: FOP-ActA 12hr-1


title: FOP-LPS 24hr-1

description: Gene expression data from FOP-ML stimulated by LPS for 24hr


title: FOP-ActA 24hr-1


title: Lineage_wATAC-p1G9

description:
lineage_profiles_wATAC.txt
G9-TARGp1_CAAGCTTGGC_S81


title: Lineage_wATAC-p1H10

description:
lineage_profiles_wATAC.txt
H10-TARGp1_ATAAGAGGCG_S94


title: Lineage_wATAC-p1H12

description:
lineage_profiles_wATAC.txt
H12-TARGp1_CTGCAATCGC_S96


title: Lineage_wATAC-p1H11

description:
lineage_profiles_wATAC.txt
H11-TARGp1_AAGATCCAAC_S95


title: Lineage_wATAC-p1G8

description:
lineage_profiles_wATAC.txt
G8-TARGp1_TTGGAGTCGG_S80


title: FOP-ActA 4hr-1

description: Gene expression data from FOP-ML stimulated by Activin-A for 4hr


title: Lineage_wATAC-p1H2

description:
lineage_profiles_wATAC.txt
H2-TARGp1_TGGCCGCAAT_S86


title: FOP-ActA 24hr-2

description: Gene expression data from FOP-ML stimulated by Activin-A for 24hr


title: Lineage_wATAC-p1G7

description:
lineage_profiles_wATAC.txt
G7-TARGp1_TCTATAAGGA_S79


title: Lineage_wATAC-p1G6

description:
lineage_profiles_wATAC.txt
G6-TARGp1_CATTATTACC_S78


title: Lineage_wATAC-p1G5

description:
lineage_profiles_wATAC.txt
G5-TARGp1_TGATACGAGT_S77


title: HEKa_EBC-1013_48h

city: Brisbane

first: Glen

middle: M

last: Boyle

state: Queensland

address: 300 Herston Road Herston

department: Department of Cell and Molecular Biology, Cancer Program

country: Australia

institute: QIMR Berghofer Medical Research Insitute

hyb_protocol: Labelled cRNA was hybridized to HumanHT-12 v4 BeadChip Arrays (Illumina Inc, San Diego, CA, USA), and then washed and scanned according to standard Illumina protocols.

data_processing: Data were extracted in GenomeStudio (Illumina) using default analysis settings and no normalization method.  Resulting data were imported into GeneSpring GX (Agilent Technologies, Santa Clara, CA, USA).  Expression values were normalized using quantile normalization with default settings.

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with 100 ng/ml EBC-1013 for 48h

label_protocol: Biotinylated cRNA was prepared with the Illumina TotalPrep RNA Amplification Kit (Ambion, Austin, TX, USA).

growth_protocol: Adult human epidermal keratinocytes (HEKa, ThermoFisher Scientific) were cultured in EpiLife Basal Medium supplemented with S7, gentamicin/amphotericin B.  T25 flasks (Nunc) were coated with a Coating Matrix kit (ThermoFisher Scientific) for 0.5 h at room temperature prior to HEKa culture.  Cells were maintained in a humidified incubator (37°C, 5% CO2) and passaged using tryspin/versene at 80% confluency.  All cells were confirmed mycoplasma negative prior to use using MycoAlert (Promega).  HEKa were used between p3 and p10 for all assays.

extract_protocol: RNA was extracted using Qiagen RNeasy mini kit as per manufacturer’s instructions, then DNase treated and purified.  RNA concentration was determined using the NanoDrop 2000 (Thermo Scientific, Wilmington, DE, USA).

treatment_protocol: HEKa were seeded into T25 flasks (Nunc) at a density of 2.5 × 104 cells per flask (5 ml).  After reaching 80% confluency, the growth medium was aspirated and replaced with 5 ml of fresh medium containing vehicle (ethanol) or 100 ng/ml EBC-1013.  At 0, 0.5, 1, 2, 4, 8, 24, 48 and 72 h, the growth medium was aspirated, cells washed twice with fresh medium before RNA extraction.

tag: cell

tag: time

tag: treatment


title: HEKa_EBC-1013_04h

scan_protocol: Labelled cRNA was hybridized to HumanHT-12 v4 BeadChip Arrays (Illumina Inc, San Diego, CA, USA), and then washed and scanned according to standard Illumina protocols.

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with 100 ng/ml EBC-1013 for 4h

value: 4 h


title: HEKa_EBC-1013_01h

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with 100 ng/ml EBC-1013 for 1h

value: 1 h


title: HEKa_EBC-1013_0h

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with 100 ng/ml EBC-1013 for 0h

value: 0 h


title: HEKa_EBC-1013_0.5h

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with 100 ng/ml EBC-1013 for 0.5h


title: HEKa_EBC-1013_72h

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with 100 ng/ml EBC-1013 for 72h


title: Lineage_wATAC-p1G4

description:
lineage_profiles_wATAC.txt
G4-TARGp1_ACGCAACTCC_S76


title: HEKa_EBC-1013_24h

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with 100 ng/ml EBC-1013 for 24h


title: HEKa_EBC-1013_02h

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with 100 ng/ml EBC-1013 for 2h

value: 2 h


title: HEKa_EBC-1013_08h

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with 100 ng/ml EBC-1013 for 8h

value: 8 h


title: Lineage_wATAC-p1G3

description:
lineage_profiles_wATAC.txt
G3-TARGp1_CAAGATTAAG_S75


title: Lineage_wATAC-p1G1

description:
lineage_profiles_wATAC.txt
G1-TARGp1_GACCGTAGCA_S73


title: Lineage_wATAC-p1G12

description:
lineage_profiles_wATAC.txt
G12-TARGp1_ACTGAATTCC_S84


title: Lineage_wATAC-p1G11

description:
lineage_profiles_wATAC.txt
G11-TARGp1_TGGCGTAGGT_S83


title: Lineage_wATAC-p1F9

description:
lineage_profiles_wATAC.txt
F9-TARGp1_AACCTAGCTT_S69


title: Lineage_wATAC-p1G2

description:
lineage_profiles_wATAC.txt
G2-TARGp1_GTCATTGCGC_S74


title: Lineage_wATAC-p1G10

description:
lineage_profiles_wATAC.txt
G10-TARGp1_ATAGGATATG_S82


title: HEKa_Vehicle_48h

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with vehicle (ethanol) for 48h

value: Vehicle


title: G_3T3-L1_Adipocyte_1

city: Seoul

first: Jae Bum

last: Kim

address: Bldg 105-Rm. 333, Seoul National University, San 56-1, Sillim Dong, Kwanak-Gu

department: Biological Sciences

country: South Korea

institute: Seoul National University

library_source: genomic

data_processing:
MethylDackel v0.4.0 was used to extract methylation levels of CpGs from the read alignments with minimum mapping quality 10
DMRs between preadipocytes and differentiated adipocytes were called with CpG_MPs
Methylation level thresholds for unmethylated and methylated hotspot calling were set to 0.4 and 0.6, respectively.
Genome_build: mm10
Supplementary_files_format_and_content: BedGraph

molecule: genomic DNA

organism: Mus musculus

source_name: Adipocyte

growth_protocol: 10% BCS media, DMI, 10% FBS

extract_protocol:
DNA was isolated using phenol-chloroform extraction.
Sequencing libraries were prepared using TruSeq DNA Methylation Library Preparation Kits

tag: strain

tag: tissue

value: Embryo

tag: source cell type

value: fibroblast

tag: derived cell type

value: adipocytes


title: Lineage_wATAC-p1F8

description:
lineage_profiles_wATAC.txt
F8-TARGp1_AGGATTACCA_S68


title: G_3T3-L1_Pre_Adipocyte_1

value: preadipocytes


title: HEKa_Vehicle_24h

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with vehicle (ethanol) for 24h


title: Lineage_wATAC-p1F7

description:
lineage_profiles_wATAC.txt
F7-TARGp1_TATAACTTCC_S67


title: HEKa_Vehicle_08h

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with vehicle (ethanol) for 8h


title: HEKa_Vehicle_0.5h

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with vehicle (ethanol) for 0.5h


title: HEKa_Vehicle_72h

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with vehicle (ethanol) for 72h


title: HEKa_Vehicle_01h

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with vehicle (ethanol) for 1h


title: HEKa_Vehicle_04h

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with vehicle (ethanol) for 4h


title: HEKa_Vehicle_0h

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with vehicle (ethanol) for 0h


title: HEKa_Vehicle_02h

source_name: Adult human epidermal keratinocytes (HEKa) cells treated with vehicle (ethanol) for 2h


title: 3T3-L1_Adipocyte_3

data_processing:
RNA expression levels were quantified by RSEM based on bowtie2 mapper
Read pairs were aligned using Bowtie to the Mus musculus genome (GRCm38/mm10).
DESeq2 was used to compute statistics for differential expression from the resulting gene expression profiles
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each Sample

extract_protocol:
RNA was isolated using phenol-chloroform extraction.
RNA libraries were prepared for sequencing using standard Illumina protocols.

value: 3T3-L1 adipocyte


title: Lineage_wATAC-p1F6

description:
lineage_profiles_wATAC.txt
F6-TARGp1_ACGAGGACCT_S66


title: 3T3-L1_Adipocyte_2


title: Lineage_wATAC-p1F5

description:
lineage_profiles_wATAC.txt
F5-TARGp1_ACGTTCAACC_S65


title: 3T3-L1_Pre_Adipocyte_2

value: 3T3-L1 preadipocyte


title: 3T3-L1_Adipocyte_1


title: Lineage_wATAC-p1F4

description:
lineage_profiles_wATAC.txt
F4-TARGp1_AACGAGGCTA_S64


title: 3T3-L1_Pre_Adipocyte_3


title: Lineage_wATAC-p1F3

description:
lineage_profiles_wATAC.txt
F3-TARGp1_GGTCCAGGAG_S63


title: Lineage_wATAC-p1F11

description:
lineage_profiles_wATAC.txt
F11-TARGp1_ACTATCCGCA_S71


title: Lineage_wATAC-p1F2

description:
lineage_profiles_wATAC.txt
F2-TARGp1_CGTCCGTCCT_S62


title: 3T3-L1_Pre_Adipocyte_1


title: Lineage_wATAC-p1F12

description:
lineage_profiles_wATAC.txt
F12-TARGp1_CGAGCTGCCA_S72


title: Lineage_wATAC-p1F1

description:
lineage_profiles_wATAC.txt
F1-TARGp1_AACTACCGAC_S61


title: Lineage_wATAC-p1F10

description:
lineage_profiles_wATAC.txt
F10-TARGp1_AGTCCGCGGA_S70


title: Lineage_wATAC-p1E8

description:
lineage_profiles_wATAC.txt
E8-TARGp1_ACCGTTACGA_S56


title: Lineage_wATAC-p1E7

description:
lineage_profiles_wATAC.txt
E7-TARGp1_TCCGGTAATC_S55


title: Lineage_wATAC-p1E6

description:
lineage_profiles_wATAC.txt
E6-TARGp1_CATGCATCTC_S54


title: Lineage_wATAC-p1E5

description:
lineage_profiles_wATAC.txt
E5-TARGp1_CTCCGGTTCT_S53


title: Lineage_wATAC-p1E4

description:
lineage_profiles_wATAC.txt
E4-TARGp1_AAGCCGGCTG_S52


title: Lineage_wATAC-p1E9

description:
lineage_profiles_wATAC.txt
E9-TARGp1_TCCGTCGCCA_S57


title: Lineage_wATAC-p1E1

description:
lineage_profiles_wATAC.txt
E1-TARGp1_GCTCTCGCCT_S49


title: Lineage_wATAC-p1E2

description:
lineage_profiles_wATAC.txt
E2-TARGp1_ACTATCTTGA_S50


title: Lineage_wATAC-p1E12

description:
lineage_profiles_wATAC.txt
E12-TARGp1_ACTTCCGAAT_S60


title: Lineage_wATAC-p1E11

description:
lineage_profiles_wATAC.txt
E11-TARGp1_TGGACTTGAC_S59


title: Lineage_wATAC-p1E10

description:
lineage_profiles_wATAC.txt
E10-TARGp1_GGCTATGACT_S58


title: Lineage_wATAC-p1E3

description:
lineage_profiles_wATAC.txt
E3-TARGp1_AGGTCAATTA_S51


title: E12.5, Control Male Replicate 3

city: RTP

first: NIEHS

last: Microarray Core

state: NC

address: 111 T.W. Alexander Drive

department: DIR

institute: NIEHS

description: Gene expression data from control E12.5 testis

hyb_protocol: Five and one-half micrograms (5.5 μg) of amplified biotin-cDNAs were fragmented and hybridized to each array for 18 hours at 45 C in a rotating hybridization oven. Array slides were stained with streptavidin/phycoerythrin utilizing a double-antibody staining procedure and then washed for antibody amplification per the GeneChip Hybridization, Wash and Stain Kit and user manual following protocol FS450-0001

scan_protocol: Arrays were scanned in an Affymetrix Scanner 3000.

data_processing: Data was obtained using TAC Software.

source_name: Control E12.5 testis

label_protocol: Gene expression analysis was conducted using Affymetrix Mouse Transcriptome Clariom D arrays (Affymetrix, Santa Clara, CA). Four microliters (4 ul) of total RNA was amplified as directed in the Nugen WT-Ovation Pico RNA Amplification System protocol and labeling with biotin following the Nugen Encore Biotin Module protocol.

extract_protocol: Arcturus PicoPure RNA isolation Kit

treatment_protocol: Amh+/-; Inhbb+/- crosses were time-mated and embryos were collected at embryonic day 12.5. Gonads were snapped frozen and stored at -80C until RNA extraction.

value: testis

value: wild type

tag: age


title: E12.5, Control Male Replicate 2


title: E12.5, Control Male Replicate 1


title: E15.5, Control Female Replicate 2

description: gene expression data from embryonic day 15.5 ovaries from wild type female litter mates

hyb_protocol: Five and one half micrograms (5.5 μg) of amplified biotin-cDNAs were fragmented and hybridized to each array for 16 hours at 45°C in a rotating hybridization oven.  Array slides were stained with streptavidin/phycoerythrin utilizing a double-antibody staining procedure and then washed for antibody amplification per the GeneChip Hybridization, Wash and Stain Kit and user manual following protocol FS450-0001.

data_processing: Data was obtained using the GeneChip® Command Console software.

source_name: Control E15.5 ovary

label_protocol: Fifty (50) ng of total RNA was amplified as directed in the Nugen WT-Ovation Pico RNA Amplification System protocol and labeling with biotin following the Nugen Encore Biotin Module protocol

treatment_protocol: Amh+/-; Inhbb+/- crosses were time-mated and embryos were collected at embryonic day 15.5. Gonads were snapped frozen and stored at -80C until RNA extraction.

value: ovary


title: Lineage_wATAC-p1D8

description:
lineage_profiles_wATAC.txt
D8-TARGp1_CGATCATTAC_S44

value: Targeted lineage amplicon captured alongside sci-ATAC-seq


title: Lineage_wATAC-p1D7

description:
lineage_profiles_wATAC.txt
D7-TARGp1_ACCAAGATCT_S43


title: E15.5, Control Female Replicate 5


title: Lineage_wATAC-p1D6

description:
lineage_profiles_wATAC.txt
D6-TARGp1_CTAACTCCAA_S42


title: E12.5, Control Male Replicate 4


title: Lineage_wATAC-p1D9

description:
lineage_profiles_wATAC.txt
D9-TARGp1_GACCTCTCTG_S45


title: E12.5, Control Female Replicate 4

description: Gene expression data from control E12.5 ovary

source_name: Control E12.5 ovary


title: E12.5, Control Female Replicate 1


title: E12.5, Control Female Replicate 2


title: E12.5, dKO Male Replicate 1

description: Gene expression data from dKO E12.5 testis

source_name: dKO E12.5 testis

value: Amh Inhbb (Activin B) dKO


title: E15.5, Control Female Replicate 4


title: Lineage_wATAC-p10A10

description:
lineage_profiles_wATAC.txt
A10-TARGp10_CCAGGTCTAC_S106


title: E12.5, Control Female Replicate 3


title: E15.5, Control Female Replicate 3


title: E12.5, dKO Male Replicate 2


title: E15.5, Control Female Replicate 1


title: E12.5, dKO Male Replicate 4


title: Lineage_wATAC-p1D2

description:
lineage_profiles_wATAC.txt
D2-TARGp1_CAAGTACTGG_S38


title: Lineage_wATAC-p1D1

description:
lineage_profiles_wATAC.txt
D1-TARGp1_CGCCGCCTCC_S37


title: Lineage_wATAC-p1D3

description:
lineage_profiles_wATAC.txt
D3-TARGp1_CGGCGAGACC_S39


title: Lineage_wATAC-p1D5

description:
lineage_profiles_wATAC.txt
D5-TARGp1_TCTAGAACTA_S41


title: E15.5, Control Male Replicate 5

description: gene expression data from embryonic day 15.5 testes from wild type male litter mates

source_name: Control E15.5 testis


title: E12.5, dKO Male Replicate 3


title: Lineage_wATAC-p1D10

description:
lineage_profiles_wATAC.txt
D10-TARGp1_GGCTAATTAA_S46


title: Lineage_wATAC-p1D11

description:
lineage_profiles_wATAC.txt
D11-TARGp1_CGAGTTAGAG_S47


title: Lineage_wATAC-p1C9

description:
lineage_profiles_wATAC.txt
C9-TARGp1_GCAACTGGCA_S33


title: Lineage_wATAC-p1C8

description:
lineage_profiles_wATAC.txt
C8-TARGp1_AATTGCCTAC_S32


title: E15.5, Control Male Replicate 3


title: Lineage_wATAC-p1C7

description:
lineage_profiles_wATAC.txt
C7-TARGp1_TCGTAGGCTT_S31


title: E15.5, Control Male Replicate 2


title: Lineage_wATAC-p1C6

description:
lineage_profiles_wATAC.txt
C6-TARGp1_AGTTGCATCT_S30


title: Lineage_wATAC-p1C5

description:
lineage_profiles_wATAC.txt
C5-TARGp1_CCTAGCGCCT_S29


title: E15.5, Control Male Replicate 1


title: Lineage_wATAC-p1D12

description:
lineage_profiles_wATAC.txt
D12-TARGp1_GATGATCGTA_S48


title: Lineage_wATAC-p1C4

description:
lineage_profiles_wATAC.txt
C4-TARGp1_CTGCTTCGAC_S28


title: Lineage_wATAC-p1C3

description:
lineage_profiles_wATAC.txt
C3-TARGp1_GACTAGTCTA_S27


title: E15.5, dKO Male Replicate 5

description: gene expression data from embryonic day 15.5 testes from Amh Inhbb (Activin B) dKO mice

source_name: dKO E15.5 testis

value: dKO  (Amh-/-; Inhbb-/-)


title: Lineage_wATAC-p1C2

description:
lineage_profiles_wATAC.txt
C2-TARGp1_TCATCTCGAT_S26


title: E15.5, dKO Male Replicate 4


title: E15.5, Control Male Replicate 4


title: E15.5, dKO Male Replicate 3


title: Lineage_wATAC-p1D4

description:
lineage_profiles_wATAC.txt
D4-TARGp1_GACCTCCGCC_S40


title: macrophage pool 3, MPL(PHAD)

city: Baltimore

first: Katharina

last: Richard

state: MD

address: 685 W. Baltimore St. HSFI-380

department: Microbiology and Immunology

institute: University of Maryland School of Medicine

description: macrophage pool 3, MPL(PHAD)

hyb_protocol: 5.2 ug of Fragmented and Biotin labeled cDNA (23 ng/uL final concentration) were hybridized for 16 hr at 45C on Affymetrix Clariom D Mouse Arrays. Array chips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: Clariom D Mouse Array chips were scanned using AffyMetrix GeneArray Scanner GCS 3000 System.

data_processing: CEL files were imported into Transcriptome Analysis Console (TAC) 4.0 software (Thermo Fisher Scientific). Expression signals of all genes (probe sets) were calculated using the RMA algorithm (default settings).

source_name: mouse macrophages 100ng/mL sMPL(PHAD) 2h

label_protocol: Biotinylated cDNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

growth_protocol: Mouse thioglycollate-elicited peritoneal exudate cells were harvested by peritoneal lavage in sterile saline, pooled from two mice, pelleted at 1000rpm for 5 min, and allowed to adhere at 4 x 10^6 cells/well in 6-well tissue culture dishes (three wells per biological replicate) in culture media (RPMI 1640 supplemented with 2% FBS, 2 mM L-glutamine, and 1% Penicilin/Streptomycin) in a humidified 37 deg. C, 5% CO2 incubator. Wells were washed three times with culture media every two hours to remove non-adherent cells and then incubated overnight. The following day, cells were washed twice and then treated as indicated.

extract_protocol: After two hours, supernatants were decanted and total RNA harvested by Roche High Pure RNA isolation kit, according to manufacturer's instructions. RNA integrity numbers (RIN) values of the nine samples ranged from 8.4 to 10.0

treatment_protocol: In the third wash step, one well per biological replicate continued to be cultured in culture media (see recipe above), one was supplemented with 100 ng/mL of synthetic TLR4 agonist E6020 (Eisai, Inc.; stock solution made at 10 mg/mL in sterile PBS), and one with 100ng/mL of synthetic MPL (Avanti Polar Lipids, PHAD(R); stock solution made at 1 mg/mL in sterile saline with 0.02% triethylamine (Sigma) and brief sonication). Cells were returned to the incubator for two hours.

tag: gender

value: female

value: 6-8 weeks

value: 100ng/mL sMPL(PHAD) 2h


title: macrophage pool 3, media control

description: macrophage pool 3, media control

source_name: mouse macrophages unstimulated 2h

value: unstimulated 2h


title: Lineage_wATAC-p1C1

description:
lineage_profiles_wATAC.txt
C1-TARGp1_GTTCCGACGA_S25


title: E15.5, dKO Male Replicate 1


title: polyAscanlib_5min

first: Taekjip

last: Ha

state: Maryland

address: 3400 N. Charles Street

institute: Johns Hopkins University

data_processing:
Trim Illumina adaptor using Trim Galore software
Merge the pair-end reads with FLASh software
Reads alignment with Bowtie2 software
Calling the sequence identity and DNA cleavage location by using custom python script
Data imputation by linear regression with custom python script
Supplementary files format and content: .data file including estimated nucleosome positioning scores and cleavage counts for each sequence in the library

organism: synthetic construct

source_name: poly(dA:dT) tract library

growth_protocol: nucleosome libraries are reconstituted by salt-dialysis methods from synthetic DNA pools with Xenopus laevis histone octamers

extract_protocol:
phenol chloroform extraction of DNA
single-stranded 3’ end DNA fragments were converted into double-stranded DNA by Bst polymerase (NEB Bst 2.0 WarmStart). And NGS library was prepared with NEBUltraII kit (NEBNext Ultra II DNA Library Prep Kit) for Illumina sequecing.

treatment_protocol: nucleosomal DNA was photo-crosslinked site-specifically and cleavaged by alkaline treatment

tag: base sequence

value: Widom 601 DNA

tag: perturbation type

value: poly(dA:dT) tract

tag: chd1 sliding

value: 5 min Chd1 sliding


title: Lineage_wATAC-p1C12

description:
lineage_profiles_wATAC.txt
C12-TARGp1_CTCGGTCAAT_S36


title: Lineage_wATAC-p1C11

description:
lineage_profiles_wATAC.txt
C11-TARGp1_GGTAGGTCTC_S35


title: polyAscanlib_0min

value: No Chd1 sliding


title: 601_5min

source_name: Widom 601 DNA

value: No perturbation


title: Lineage_wATAC-p1C10

description:
lineage_profiles_wATAC.txt
C10-TARGp1_GATACCTAAG_S34


title: Lineage_wATAC-p1B9

description:
lineage_profiles_wATAC.txt
B9-TARGp1_AGCGTCAATG_S21


title: macrophage pool 3, E6020

description: macrophage pool 3, E6020

source_name: mouse macrophages 100ng/mL E6020 2h


title: macrophage pool 2, MPL(PHAD)

description: macrophage pool 2, MPL(PHAD)


title: macrophage pool 1, E6020

description: macrophage pool 1, E6020


title: macrophage pool 2, media control

description: macrophage pool 2, media control


title: Lineage_wATAC-p1B7

description:
lineage_profiles_wATAC.txt
B7-TARGp1_TGATTCCTCA_S19


title: macrophage pool 2, E6020

description: macrophage pool 2, E6020


title: macrophage pool 1, media control

description: macrophage pool 1, media control


title: E15.5, dKO Male Replicate 2


title: 601_0min


title: Lineage_wATAC-p1B6

description:
lineage_profiles_wATAC.txt
B6-TARGp1_GTCGCTCAGT_S18


title: Lineage_wATAC-p1B8

description:
lineage_profiles_wATAC.txt
B8-TARGp1_CCGTCGGAGG_S20