title: s1435_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1339


title: s1434_mouse5_HBRX2344_Metastases_1cells

status: Public on May 13 2022

type: SRA

city: Basel

first: Mohamed

last: Bentires-Alj

address: Hebelstrasse 20

department: DBM

country: Switzerland

institute: University Hospital Basel

description:
Fluidigm C1 platform
well1338

library_source: transcriptomic single cell

data_processing:
Reads were aligned to human genom with STAR. Following observation under the microscope, wells containing more than 1 cell or debris were marked and removed from further analyses.
Following observation under the microscope, wells containing more than 1 cell or debris were marked and removed from further analyses.
Cell cycle of individual cells were inferred using sets of known cell cycle-regulated genes known to peak in transcription at given cell cycle stages obtained from (PMID: 12058064, PMID:11416145)
The cell cycle and library complexity (percentage of detected genes) were modeled as covariates and regressed out of the log-normalized counts using glm.fit (R package glm).
Differential gene expression between single cell clusters was performed using pairwise t-test implemented in FindMarkers function from R package scran.
Gene set enrichment was performed with bioconductor packages fgsea and msigdb
Assembly: hg38
Supplementary files format and content: counts_raw.csv is a matrix containing raw counts after alignment. counts_afterQC are counts for the cells passing QC. Cccorected_logcounts.csv contains logcounts  of the cells that passed QC after the cell-cycle correction. metadata.csv contains addition information on the column names of counts_raw.csv  and CCcorected_logcounts.csv.

molecule: polyA RNA

organism: Homo sapiens

source_name: Metastases

growth_protocol: MDA-MB-231 and PDX models were implanted in the 4th mammary fat pad (cleared) of 4-8 week-old NSG mice. Primary tumors were resected. Lung metastasis cells were isolated out of the dissected lung at a later time (when mice reached ethical endpoints)

extract_protocol:
Primary tumors and lung metastases were mechanically and enzymatically digested with a collagenase/hyaluronidase solution (Stem Cell Technologies, 07912). Human cancer cells were recovered by FACS sorting, based CD298 or GFP expression.
Single cell isolation was performed on the Fluidigm C1 platform according to  manufacturer protocol. mRNA was isolated with the Takara SMART-Seq Ultra Low RNA kit (Takara Bio; 634833) . Libraries for Illumina sequencing were prepared with the Nextera XT DNA Library Preparation Kit (Illumina; FC-131-1096).

tag: tissue

value: Metastases

tag: cell line

tag: cell type

value: cancer cells


title: s1440_mouse6_HBRX2353_Metastases_2cells

description:
Fluidigm C1 platform
well1344


title: s1437_mouse6_HBRX2353_Metastases_0cells

description:
Fluidigm C1 platform
well1341


title: s1430_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1334


title: s1432_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1336


title: s1428_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1332


title: s1427_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1331


title: s1449_mouse6_HBRX2353_Metastases_debriscells

description:
Fluidigm C1 platform
well1353


title: s1431_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1335


title: s1426_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1330


title: s1425_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1329


title: s1424_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1328


title: s1441_mouse6_HBRX2353_Metastases_2cells

description:
Fluidigm C1 platform
well1345


title: s1423_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1327


title: s1418_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1322


title: s1420_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1324


title: s1417_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1321


title: s1421_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1325


title: s1419_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1323


title: s1415_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1319


title: s1416_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1320


title: s1413_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1317


title: s1414_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1318


title: s1412_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1316


title: s1409_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1313


title: s1410_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1314


title: s1411_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1315


title: s1407_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1311


title: s1406_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1310


title: s1408_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1312


title: s1429_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1333


title: s1404_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1308


title: s1401_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1305


title: s1403_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1307


title: s1402_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1306


title: s1399_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1303


title: s1397_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1301


title: s1396_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1300


title: s1398_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1302


title: s1400_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1304


title: s1422_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1326


title: s1395_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1299


title: s1393_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1297


title: s1392_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1296


title: s1390_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1294


title: s1388_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1292


title: s1391_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1295


title: s1394_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1298


title: s1389_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1293


title: s1387_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1291


title: s1385_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1289


title: s1405_mouse5_HBRX2344_Metastases_2cells

description:
Fluidigm C1 platform
well1309


title: s1382_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1286


title: s1383_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1287


title: s1384_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1288


title: s1381_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1285


title: s1379_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1283


title: s1380_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1284


title: s1377_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1281


title: s1376_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1280


title: s1378_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1282


title: s1375_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1279


title: s1374_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1278


title: s1372_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1276


title: s1373_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1277


title: s1371_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1275


title: s1369_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1273


title: s1368_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1272


title: s1370_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1274


title: s1367_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1271


title: s1386_mouse5_HBRX2344_Metastases_5cells

description:
Fluidigm C1 platform
well1290


title: s1366_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1270


title: s1364_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1268


title: s1365_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1269


title: s1360_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1264


title: s1362_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1266


title: s1363_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1267


title: s1358_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1262


title: s1359_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1263


title: s1357_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1261


title: s1353_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1257


title: s1355_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1259


title: s1356_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1260


title: s1354_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1258


title: s1351_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1255


title: s1350_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1254


title: s1347_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1251


title: s1345_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1249


title: s1349_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1253


title: s1348_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1252


title: s1346_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1250


title: s1344_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1248


title: s1340_mouse4_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1244


title: s1361_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1265


title: s1338_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1242


title: s1337_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1241


title: s1335_mouse4_HBRX2344_Metastases_5cells

description:
Fluidigm C1 platform
well1239


title: s1333_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1237


title: s1336_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1240


title: s1334_mouse4_HBRX2344_Metastases_0cells

description:
Fluidigm C1 platform
well1238


title: s1332_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1236


title: s1331_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1235


title: s1352_mouse5_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1256


title: s1329_mouse4_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1233


title: s1327_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1231


title: s1328_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1232


title: s1325_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1229


title: s1322_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1226


title: s1343_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1247


title: s1323_mouse4_HBRX2344_Metastases_2cells

description:
Fluidigm C1 platform
well1227


title: s1326_mouse4_HBRX2344_Metastases_0cells

description:
Fluidigm C1 platform
well1230


title: s1324_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1228


title: s1318_mouse4_HBRX2344_Metastases_0cells

description:
Fluidigm C1 platform
well1222


title: s1321_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1225


title: s1316_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1220


title: s1342_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1246


title: s1319_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1223


title: s1341_mouse5_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1245


title: s1315_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1219


title: s1339_mouse4_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1243


title: s1314_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1218


title: s1312_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1216


title: s1313_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1217


title: s1330_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1234


title: s1311_mouse4_HBRX2344_Metastases_0cells

description:
Fluidigm C1 platform
well1215


title: s1309_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1213


title: s1310_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1214


title: s1308_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1212


title: s1306_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1210


title: s1305_mouse4_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1209


title: s1304_mouse4_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1208


title: s1299_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1203


title: s1320_mouse4_HBRX2344_Metastases_2cells

description:
Fluidigm C1 platform
well1224


title: s1302_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1206


title: s1317_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1221


title: s1303_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1207


title: s1298_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1202


title: s1301_mouse4_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1205


title: s1297_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1201


title: s1296_mouse4_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1200


title: s1294_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1198


title: s1295_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1199


title: s1293_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1197


title: s1290_mouse4_HBRX2344_Metastases_2cells

description:
Fluidigm C1 platform
well1194


title: s1289_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1193


title: s1292_mouse4_HBRX2344_Metastases_0cells

description:
Fluidigm C1 platform
well1196


title: s1291_mouse4_HBRX2344_Metastases_0cells

description:
Fluidigm C1 platform
well1195


title: s1285_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1189


title: s1307_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1211


title: s1283_mouse4_HBRX2344_Metastases_debriscells

description:
Fluidigm C1 platform
well1187


title: s1286_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1190


title: s1284_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1188


title: s1282_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1186


title: s1279_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1183


title: s1281_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1185


title: s1288_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1192


title: s1277_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1181


title: s1276_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1180


title: s1275_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1179


title: s1274_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1178


title: s1287_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1191


title: s1271_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1175


title: s1272_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1176


title: s1278_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1182


title: s1268_mouse4_HBRX2344_Metastases_2cells

description:
Fluidigm C1 platform
well1172


title: s1267_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1171


title: s1270_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1174


title: s1264_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1168


title: s1263_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1167


title: s1265_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1169


title: s1261_mouse4_HBRX2344_Metastases_0cells

description:
Fluidigm C1 platform
well1165


title: s1273_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1177


title: s1260_mouse4_HBRX2344_Metastases_0cells

description:
Fluidigm C1 platform
well1164


title: s1266_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1170


title: s1280_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1184


title: s1258_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1162


title: s1262_mouse4_HBRX2344_Metastases_0cells

description:
Fluidigm C1 platform
well1166


title: s1259_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1163


title: s1257_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1161


title: s1256_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1160


title: s1255_mouse4_HBRX2344_Metastases_0cells

description:
Fluidigm C1 platform
well1159


title: s1254_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1158


title: s1251_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1155


title: s1252_mouse4_HBRX2344_Metastases_0cells

description:
Fluidigm C1 platform
well1156


title: s1253_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1157


title: s1250_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1154


title: s1249_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1153


title: s1269_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1173


title: s1248_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1152


title: s1247_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1151


title: s1244_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1148

source_name: Tumor

value: Tumor


title: s1245_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1149


title: s1246_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1150


title: s1241_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1145


title: s1239_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1143


title: s1240_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1144


title: s1236_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1140


title: s1237_mouse9_HBRX1921_Tumor_2cells

description:
Fluidigm C1 platform
well1141


title: s1234_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1138


title: s1235_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1139


title: s1233_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1137


title: s1231_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1135


title: s1229_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1133


title: s1230_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1134


title: s1226_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1130


title: s1227_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1131


title: s1228_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1132


title: s1225_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1129


title: s1223_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1127


title: s1224_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1128


title: s1243_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1147


title: s1221_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1125


title: s1242_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1146


title: s1222_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1126


title: s1217_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1121


title: s1216_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1120


title: s1220_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1124


title: s1219_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1123


title: s1238_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1142


title: s1218_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1122


title: s1215_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1119


title: s1212_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1116


title: s1232_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1136


title: s1209_mouse9_HBRX1921_Tumor_3cells

description:
Fluidigm C1 platform
well1113


title: s1210_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1114


title: s1213_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1117


title: s1211_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1115


title: s1208_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1112


title: s1214_mouse9_HBRX1921_Tumor_2cells

description:
Fluidigm C1 platform
well1118


title: s1207_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1111


title: s1206_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1110


title: s1205_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1109


title: s1203_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1107


title: s1201_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1105


title: s1204_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1108


title: s1202_mouse9_HBRX1921_Tumor_2cells

description:
Fluidigm C1 platform
well1106


title: s1197_mouse9_HBRX1921_Tumor_2cells

description:
Fluidigm C1 platform
well1101


title: s1198_mouse9_HBRX1921_Tumor_2cells

description:
Fluidigm C1 platform
well1102


title: s1196_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1100


title: s1194_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1098


title: s1191_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1095


title: s1195_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1099


title: s1193_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1097


title: s1199_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1103


title: s1189_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1093


title: s1188_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1092


title: s1182_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1086


title: s1184_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1088


title: s1185_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1089


title: s1186_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1090


title: s1183_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1087


title: s1180_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1084


title: s1178_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1082


title: s1181_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1085


title: s1200_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1104


title: s1179_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1083


title: s1177_mouse9_HBRX1921_Tumor_2cells

description:
Fluidigm C1 platform
well1081


title: s1174_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1078


title: s1176_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1080


title: s1175_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1079


title: s1192_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1096


title: s1171_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1075


title: s1190_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1094


title: s1172_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1076


title: s1173_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1077


title: s1168_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1072


title: s1165_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1069


title: s1187_mouse9_HBRX1921_Tumor_2cells

description:
Fluidigm C1 platform
well1091


title: s1170_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1074


title: s1166_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1070


title: s1163_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1067


title: s1167_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1071


title: s1169_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1073


title: s1161_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1065


title: s1162_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1066


title: s1164_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1068


title: s1156_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1060


title: s1159_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1063


title: s1157_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1061


title: s1158_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1062


title: s1154_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1058


title: s1151_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1055


title: s1153_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1057


title: s1155_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1059


title: s1152_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1056


title: s1149_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1053


title: s1150_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1054


title: s1146_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1050


title: s1147_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1051


title: s1145_mouse8_HBRX1921_Tumor_2cells

description:
Fluidigm C1 platform
well1049


title: s1142_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1046


title: s1144_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1048


title: s1140_mouse8_HBRX1921_Tumor_2cells

description:
Fluidigm C1 platform
well1044


title: s1160_mouse9_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1064


title: s1139_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1043


title: s1136_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1040


title: s1137_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1041


title: s1143_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1047


title: s1135_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1039


title: s1141_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1045


title: s1138_mouse8_HBRX1921_Tumor_2cells

description:
Fluidigm C1 platform
well1042


title: s1131_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1035


title: s1130_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1034


title: s1133_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1037


title: s1129_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1033


title: s1148_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1052


title: s1127_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1031


title: s1126_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1030


title: s1128_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1032


title: s1125_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1029


title: s1122_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1026


title: s1123_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1027


title: s1121_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1025


title: s1120_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1024


title: s1118_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1022


title: s1134_mouse8_HBRX1921_Tumor_0cells

description:
Fluidigm C1 platform
well1038


title: s1119_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1023


title: s1117_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1021


title: s1114_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1018


title: s1111_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1015


title: s1113_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1017


title: s1115_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1019


title: s1109_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1013


title: s1132_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1036


title: s1112_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1016


title: s1110_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1014


title: s1108_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1012


title: s1124_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1028


title: s1105_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1009


title: s1107_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1011


title: s1300_mouse4_HBRX2344_Metastases_1cells

description:
Fluidigm C1 platform
well1204


title: s1104_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1008


title: s1102_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1006


title: s1100_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1004


title: s1101_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1005


title: s1099_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1003


title: s1098_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1002


title: s1097_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1001


title: s1095_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well999


title: s1096_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1000


title: s1116_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1020


title: s1094_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well998


title: s1093_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well997


title: s1091_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well995


title: s1089_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well993


title: s1092_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well996


title: s1090_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well994


title: s1088_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well992


title: s1106_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1010


title: s1086_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well990


title: s1087_mouse8_HBRX1921_Tumor_2cells

description:
Fluidigm C1 platform
well991


title: s1084_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well988


title: s1085_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well989


title: s1083_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well987


title: s1103_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well1007


title: s1082_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well986


title: s1081_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well985


title: s1080_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well984


title: s1076_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well980


title: s1077_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well981


title: s1079_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well983


title: s1078_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well982


title: s1074_mouse8_HBRX1921_Tumor_2cells

description:
Fluidigm C1 platform
well978


title: s1075_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well979


title: s1073_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well977


title: s1071_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well975


title: s1072_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well976


title: s1066_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well970


title: s1067_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well971


title: s1069_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well973


title: s1063_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well967


title: s1065_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well969


title: s1062_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well966


title: s1064_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well968


title: s1056_mouse8_HBRX1921_Tumor_2cells

description:
Fluidigm C1 platform
well960


title: s1058_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well962


title: s1055_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well959


title: s1061_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well965


title: s1060_mouse8_HBRX1921_Tumor_2cells

description:
Fluidigm C1 platform
well964


title: s1057_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well961


title: s1059_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well963


title: s1053_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well957


title: s1052_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well956


title: s1054_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well958


title: s1051_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well955


title: s1049_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well953


title: s1048_mouse7_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well952


title: s1045_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well949


title: s1047_mouse7_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well951


title: s1050_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well954


title: s1068_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well972


title: s1044_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well948


title: s1070_mouse8_HBRX1921_Tumor_1cells

description:
Fluidigm C1 platform
well974


title: s1042_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well946


title: s1043_mouse7_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well947


title: s1046_mouse7_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well950


title: s1041_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well945


title: s1039_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well943


title: s1040_mouse7_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well944


title: s1037_mouse7_HBRX2353_Tumor_debriscells

description:
Fluidigm C1 platform
well941


title: s1036_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well940


title: s1038_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well942


title: s1033_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well937


title: s1035_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well939


title: s1034_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well938


title: s1029_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well933


title: s1032_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well936


title: s1031_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well935


title: s1028_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well932


title: s1027_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well931


title: s1026_mouse7_HBRX2353_Tumor_debriscells

description:
Fluidigm C1 platform
well930


title: s1025_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well929


title: s1024_mouse7_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well928


title: s1018_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well922


title: s1021_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well925


title: s1016_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well920


title: s1012_mouse7_HBRX2353_Tumor_debriscells

description:
Fluidigm C1 platform
well916


title: s1015_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well919


title: s1013_mouse7_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well917


title: s1017_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well921


title: s1019_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well923


title: s1014_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well918


title: s1030_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well934


title: s1009_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well913


title: s1008_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well912


title: s1010_mouse7_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well914


title: s1003_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well907


title: s1007_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well911


title: s1023_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well927


title: s0997_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well901


title: s1004_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well908


title: s1005_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well909


title: s0995_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well899


title: s0994_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well898


title: s0998_mouse7_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well902


title: s0991_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well895


title: s1020_mouse7_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well924


title: s1002_mouse7_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well906


title: s1011_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well915


title: s0990_mouse7_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well894


title: s1022_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well926


title: s1001_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well905


title: s0999_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well903


title: s0985_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well889


title: s0996_mouse7_HBRX2353_Tumor_3cells

description:
Fluidigm C1 platform
well900


title: s0981_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well885


title: s0992_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well896


title: s0984_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well888


title: s0983_mouse7_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well887


title: s0982_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well886


title: s0986_mouse7_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well890


title: s0993_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well897


title: s0988_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well892


title: s0979_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well883


title: s0977_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well881


title: s0976_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well880


title: s0980_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well884


title: s0989_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well893


title: s1006_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well910


title: s0974_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well878


title: s0975_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well879


title: s0971_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well875


title: s0972_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well876


title: s0987_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well891


title: s1000_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well904


title: s0967_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well871


title: s0964_mouse7_HBRX2353_Tumor_debriscells

description:
Fluidigm C1 platform
well868


title: s0960_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well864


title: s0962_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well866


title: s0959_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well863


title: s0978_mouse7_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well882


title: s0961_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well865


title: s0970_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well874


title: s0973_mouse7_HBRX2353_Tumor_debriscells

description:
Fluidigm C1 platform
well877


title: s0957_mouse7_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well861


title: s0958_mouse7_HBRX2353_Tumor_3cells

description:
Fluidigm C1 platform
well862


title: s0953_mouse6_HBRX2353_Tumor_debriscells

description:
Fluidigm C1 platform
well857


title: s0951_mouse6_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well855


title: s0950_mouse6_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well854


title: s0952_mouse6_HBRX2353_Tumor_3cells

description:
Fluidigm C1 platform
well856


title: s0945_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well849


title: s0969_mouse7_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well873


title: s0956_mouse6_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well860


title: s0965_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well869


title: s0955_mouse6_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well859


title: s0944_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well848


title: s0966_mouse7_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well870


title: s0946_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well850


title: s0954_mouse6_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well858


title: s0948_mouse6_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well852


title: s0943_mouse6_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well847


title: s0949_mouse6_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well853


title: s0968_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well872


title: s0963_mouse7_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well867


title: s0942_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well846


title: s0939_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well843


title: s0941_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well845


title: s0937_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well841


title: s0935_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well839


title: s0936_mouse6_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well840


title: s0947_mouse6_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well851


title: s0934_mouse6_HBRX2353_Tumor_3cells

description:
Fluidigm C1 platform
well838


title: s0938_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well842


title: s0929_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well833


title: s0933_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well837


title: s0932_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well836


title: s0931_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well835


title: s0925_mouse6_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well829


title: s0930_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well834


title: s0923_mouse6_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well827


title: s0920_mouse6_HBRX2353_Tumor_debriscells

description:
Fluidigm C1 platform
well824


title: s0921_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well825


title: s0926_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well830


title: s0922_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well826


title: s0919_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well823


title: s0924_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well828


title: s0940_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well844


title: s0916_mouse6_HBRX2353_Tumor_debriscells

description:
Fluidigm C1 platform
well820


title: s0917_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well821


title: s0915_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well819


title: s0913_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well817


title: s0912_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well816


title: s0907_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well811


title: s0908_mouse6_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well812


title: s0906_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well810


title: s0905_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well809


title: s0927_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well831


title: s0904_mouse6_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well808


title: s0903_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well807


title: s0902_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well806


title: s0901_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well805


title: s0900_mouse6_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well804


title: s0899_mouse6_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well803


title: s0897_mouse6_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well801


title: s0898_mouse6_HBRX2353_Tumor_debriscells

description:
Fluidigm C1 platform
well802


title: s0895_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well799


title: s0893_mouse6_HBRX2353_Tumor_3cells

description:
Fluidigm C1 platform
well797


title: s0891_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well795


title: s0928_mouse6_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well832


title: s0892_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well796


title: s0896_mouse6_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well800


title: s0918_mouse6_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well822


title: s0888_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well792


title: s0890_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well794


title: s0889_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well793


title: s0887_mouse6_HBRX2353_Tumor_3cells

description:
Fluidigm C1 platform
well791


title: s0911_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well815


title: s0910_mouse6_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well814


title: s0909_mouse6_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well813


title: s0914_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well818


title: s0883_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well787


title: s0885_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well789


title: s0884_mouse6_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well788


title: s0881_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well785


title: s0882_mouse6_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well786


title: s0880_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well784


title: s0894_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well798


title: s0878_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well782


title: s0877_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well781


title: s0876_mouse6_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well780


title: s0873_mouse6_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well777


title: s0874_mouse6_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well778


title: s0871_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well775


title: s0872_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well776


title: s0870_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well774


title: s0869_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well773


title: s0886_mouse6_HBRX2353_Tumor_0cells

description:
Fluidigm C1 platform
well790


title: s0864_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well768


title: s0862_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well766


title: s0868_mouse6_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well772


title: s0865_mouse6_HBRX2353_Tumor_2cells

description:
Fluidigm C1 platform
well769


title: s0866_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well770


title: s0867_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well771


title: s0863_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well767


title: s0861_mouse6_HBRX2353_Tumor_3cells

description:
Fluidigm C1 platform
well765


title: s0860_mouse5_HBRX2344_Tumor_0cells

description:
Fluidigm C1 platform
well764


title: s0859_mouse5_HBRX2344_Tumor_0cells

description:
Fluidigm C1 platform
well763


title: s0879_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well783


title: s0856_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well760


title: s0858_mouse5_HBRX2344_Tumor_0cells

description:
Fluidigm C1 platform
well762


title: s0857_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well761


title: s0875_mouse6_HBRX2353_Tumor_1cells

description:
Fluidigm C1 platform
well779


title: s0855_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well759


title: s0851_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well755


title: s0849_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well753


title: s0852_mouse5_HBRX2344_Tumor_0cells

description:
Fluidigm C1 platform
well756


title: s0854_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well758


title: s0850_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well754


title: s0848_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well752


title: s0845_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well749


title: s0846_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well750


title: s0847_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well751


title: s0843_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well747


title: s0842_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well746


title: s0844_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well748


title: s0836_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well740


title: s0837_mouse5_HBRX2344_Tumor_2cells

description:
Fluidigm C1 platform
well741


title: s0840_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well744


title: s0841_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well745


title: s0839_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well743


title: s0834_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well738


title: s0833_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well737


title: s0838_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well742


title: s0853_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well757


title: s0832_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well736


title: s0829_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well733


title: s0828_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well732


title: s0830_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well734


title: s0831_mouse5_HBRX2344_Tumor_2cells

description:
Fluidigm C1 platform
well735


title: s0827_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well731


title: s0826_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well730


title: s0824_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well728


title: s0820_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well724


title: s0822_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well726


title: s0821_mouse5_HBRX2344_Tumor_2cells

description:
Fluidigm C1 platform
well725


title: s0819_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well723


title: s0818_mouse5_HBRX2344_Tumor_3cells

description:
Fluidigm C1 platform
well722


title: s0817_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well721


title: s0816_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well720


title: s0835_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well739


title: s0814_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well718


title: s0813_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well717


title: s0815_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well719


title: s0808_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well712


title: s0809_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well713


title: s0811_mouse5_HBRX2344_Tumor_2cells

description:
Fluidigm C1 platform
well715


title: s0812_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well716


title: s0810_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well714


title: s0806_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well710


title: s0807_mouse5_HBRX2344_Tumor_2cells

description:
Fluidigm C1 platform
well711


title: s0803_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well707


title: s0802_mouse5_HBRX2344_Tumor_2cells

description:
Fluidigm C1 platform
well706


title: s0805_mouse5_HBRX2344_Tumor_2cells

description:
Fluidigm C1 platform
well709


title: s0823_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well727


title: s0798_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well702


title: s0800_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well704


title: s0825_mouse5_HBRX2344_Tumor_2cells

description:
Fluidigm C1 platform
well729


title: s0801_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well705


title: s0797_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well701


title: s0804_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well708


title: s0799_mouse5_HBRX2344_Tumor_2cells

description:
Fluidigm C1 platform
well703


title: s0793_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well697


title: s0796_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well700


title: s0794_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well698


title: s0791_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well695


title: s0790_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well694


title: s0788_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well692


title: s0789_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well693


title: s0786_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well690


title: s0784_mouse5_HBRX2344_Tumor_3cells

description:
Fluidigm C1 platform
well688


title: s0785_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well689


title: s0783_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well687


title: s0782_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well686


title: s0776_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well680


title: s0779_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well683


title: s0778_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well682


title: s0792_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well696


title: s0777_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well681


title: s0769_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well673


title: s0771_mouse5_HBRX2344_Tumor_3cells

description:
Fluidigm C1 platform
well675


title: s0795_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well699


title: s0775_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well679


title: s0780_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well684


title: s0774_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well678


title: s0770_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well674


title: s0767_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well671


title: s0772_mouse5_HBRX2344_Tumor_2cells

description:
Fluidigm C1 platform
well676


title: s0787_mouse5_HBRX2344_Tumor_2cells

description:
Fluidigm C1 platform
well691


title: s0768_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well672


title: s0764_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well668


title: s0765_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well669


title: s0766_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well670


title: s0763_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well667


title: s0760_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well664


title: s0762_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well666


title: s0761_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well665


title: s0757_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well661


title: s0759_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well663


title: s0758_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well662


title: s0781_mouse5_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well685


title: s0773_mouse5_HBRX2344_Tumor_3cells

description:
Fluidigm C1 platform
well677


title: s0756_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well660


title: s0755_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well659


title: s0754_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well658


title: s0753_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well657


title: s0749_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well653


title: s0752_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well656


title: s0747_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well651


title: s0751_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well655


title: s0748_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well652


title: s0742_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well646


title: s0743_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well647


title: s0744_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well648


title: s0741_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well645


title: s0746_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well650


title: s0745_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well649


title: s0736_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well640


title: s0740_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well644


title: s0737_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well641


title: s0735_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well639


title: s0738_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well642


title: s0739_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well643


title: s0733_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well637


title: s0731_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well635


title: s0732_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well636


title: s0728_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well632


title: s0730_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well634


title: s0729_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well633


title: s0726_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well630


title: s0750_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well654


title: s0727_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well631


title: s0721_mouse4_HBRX2344_Tumor_2cells

description:
Fluidigm C1 platform
well625


title: s0724_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well628


title: s0722_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well626


title: s0720_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well624


title: s0718_mouse4_HBRX2344_Tumor_2cells

description:
Fluidigm C1 platform
well622


title: s0717_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well621


title: s0723_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well627


title: s0715_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well619


title: s0714_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well618


title: s0734_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well638


title: s0716_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well620


title: s0712_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well616


title: s0713_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well617


title: s0709_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well613


title: s0710_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well614


title: s0711_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well615


title: s0706_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well610


title: s0707_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well611


title: s0719_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well623


title: s0725_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well629


title: s0703_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well607


title: s0704_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well608


title: s0702_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well606


title: s0708_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well612


title: s0700_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well604


title: s0699_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well603


title: s0705_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well609


title: s0698_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well602


title: s0697_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well601


title: s0694_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well598


title: s0695_mouse4_HBRX2344_Tumor_debriscells

description:
Fluidigm C1 platform
well599


title: DMSO vehicle control parasites 48 hpi time point

type: RNA

city: STATE COLLEGE

first: Timothy

middle: J

last: Russell

state: PA

address: W122 Millennium Science Complex

country: USA

institute: Pennsylvania State University

description:
DMSO vehicle control parasites time point 7 of 7. Biological replicate 1 of 1.
DMSO_48

hyb_protocol: Painter, H. J., Altenhofen, L. M., Kafsack, B. F. C. & Llinás, M. Whole-genome analysis of Plasmodium spp. Utilizing a new agilent technologies DNA microarray platform. Methods Mol. Biol. 923, 213–219 (2013).

scan_protocol: Scanned on an Axon 4200A Scanner Agilent Feature Extraction Software version 11.0.1.1 was used to extract signal intensities

data_processing: LIMMA was used to normalize and extract signal intensities. Arrays were normalized using robust splines normalization and gene expression values were averaged across probes.

molecule: total RNA

organism: Plasmodium falciparum

source_name: Asexual blood stage parasites

growth_protocol: Plasmodium falciparum parasites were cultured at 37 C under standard conditions in the presence of 5% CO2 and 6% O2 in RPMI 1640 media. The media was supplemented with HEPES, NaHCO3, hypoxanthine, 2.5% (w/v) Albumax II, and gentamycin (50 ug/ml).

extract_protocol: Total RNA was extracted using Trizol following manufacturer's instructions

tag: age

value: 48 hpi

tag: treatment

tag: strain

value: 3D7 wildtype

source_name: pooled asexual blood stage P. falciparum total RNA


title: s0693_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well597


title: s0691_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well595


title: s0692_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well596


title: DMSO vehicle control parasites 42 hpi time point

description:
DMSO vehicle control parasites time point 6 of 7. Biological replicate 1 of 1.
DMSO_42

label_protocol: Painter, H. J., Altenhofen, L. M., Kafsack, B. F. C. & Llinás, M. Whole-genome analysis of Plasmodium spp. Utilizing a new agilent technologies DNA microarray platform. Methods Mol. Biol. 923, 213–219 (2013).

value: 42 hpi


title: DMSO vehicle control parasites 18 hpi time point

description:
DMSO vehicle control parasites time point 3 of 7. Biological replicate 1 of 1.
DMSO_18

value: 18 hpi


title: s0690_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well594


title: DMSO vehicle control parasites 24 hpi time point

description:
DMSO vehicle control parasites time point 4 of 7. Biological replicate 1 of 1.
DMSO_24

value: 24 hpi


title: DMSO vehicle control parasites 30 hpi time point

description:
DMSO vehicle control parasites time point 5 of 7. Biological replicate 1 of 1.
DMSO_30

value: 30 hpi


title: DMSO vehicle control parasites 12 hpi time point

description:
DMSO vehicle control parasites time point 2 of 7. Biological replicate 1 of 1.
DMSO_12

value: 12 hpi


title: s0701_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well605


title: Lgr4+/+ 2mo Hp  vs. Lgr4fl/fl 2mo Hp

city: Berlin

first: Hans-Joachim

last: Mollenkopf

address: Charitéplatz 1

country: Germany

institute: Max-Planck-Institute for Infection Biology

description: polarity(+)

hyb_protocol: Whole mouse genome 4x44k microarrays were done according to the supplier’s protocol (Agilent Technologies).

scan_protocol: Scanning of microarrays was performed with 5 µm resolution and extended range (XDR)  using a DNA microarray laser scanner (Agilent Technologies)

data_processing: Raw microarray image data were analyzed with the Image Analysis / Feature Extraction software G2567AA (Version A.11.5.1.1, Agilent). The extracted MAGE-ML files were analyzed with the Rosetta Resolver Biosoftware (Rosetta Biosoftware). Intra-array data were normalized with the GE2_1105_Oct12 extraction protocol and interarray normalization was done by the mean of trimmed positive non-flagged/non-control reporters.

organism: Mus musculus

source_name: Lgr4+/+ 2mo Hp

label_protocol: RNA labeling was performed with the Quick-Amp Labeling Kit  (Agilent Technologies) according supplier's instructions.

growth_protocol: All animals were maintained in autoclaved microisolator cages and provided with sterile drinking water and chow ad libitum. Male, 6- to 8-week-old mice were used for this study.

extract_protocol: Total RNA was isolated by the Trizol (Invitrogen) method according the manufacturer´s protocol.

treatment_protocol: Tamoxifen (Sigma) was injected intraperitoneally into mice to induce floxed genes (fl/fl) mutant allel knock out.

value: Lgr4 wildtype allel

tag: experiment

value: 2 month infected with H. pylori

source_name: Lgr4fl/fl 2mo Hp

value: Lgr4 loxP conditional homozygote mutat allel


title: s0689_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well593


title: Compound C treated parasites 48 hpi time point

description:
Compound C treated parasites time point 7 of 7. Biological replicate 1 of 1.
Compound_C_48


title: Compound C treated parasites 42 hpi time point

description:
Compound C treated parasites time point 6 of 7. Biological replicate 1 of 1.
Compound_C_42


title: DMSO vehicle control parasites 6 hpi time point

description:
DMSO vehicle control parasites time point 1 of 7. Biological replicate 1 of 1.
DMSO_6

value: 6 hpi


title: Lgr4fl/fl 2mo Hp  vs. Lgr4+/+ 2mo Hp

description: polarity(-)


title: s0688_mouse4_HBRX2344_Tumor_debriscells

description:
Fluidigm C1 platform
well592


title: s0696_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well600


title: Non-target control rep2

city: Worcester

first: Magnolia

last: Pak

state: MA

address: 364 Plantation Street

department: Molecular, Cell and Cancer Biology

institute: University of Massachusetts Medical School

library_source: transcriptomic

data_processing:
Aligned with star_2.5.3a.     STAR --runThreadN 16 \  --genomeDir $genome_idx \  --sjdbGTFfile $gtf \  --readFilesCommand zcat \  --readFilesIn $R1 \  --outFileNamePrefix ../star/$name. \  --outFilterType BySJout \  --outFilterMultimapNmax 20  \  --alignSJoverhangMin 8  \  --alignSJDBoverhangMin 1  \  --outFilterMismatchNmax 999  \  --outFilterMismatchNoverReadLmax 0.04  \  --alignIntronMin 20  \  --alignIntronMax 1000000  \  --alignMatesGapMax 1000000  \  --outFilterIntronMotifs RemoveNoncanonical  \  --outSAMstrandField intronMotif \  --outSAMtype BAM SortedByCoordinate \  --quantMode GeneCounts \  --outReadsUnmapped Fastx
Calculated gene expression with featureCounts_1.5.2.     featureCounts -a $gtf \  -o ../featureCount/counts.gene_id.txt \  -g gene_id \  -s 0 \  -M -Q 20 -T 4 Genome_build: hg38; ENSEMBL GRCh38 annotation release 89
Supplementary_files_format_and_content: Rui

growth_protocol: MCF10AT cells were maintained in DMEM/F12 supplemented with 5% donor horse serum, 20 ng/ml epidermal growth factor, 10 µg/ml insulin, 1 ng/ml cholera toxin, 100 µg/ml hydrocortisone, 50 U/ml penicillin, and 50 µg/ml streptomycin.

extract_protocol:
RNA was harvested using Trizol reagent.  Illumina TruSeq Stranded mRNA Library Prep Kit was used with 2 ug of total RNA for the construction of sequencing libraries.
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: For stable shRNA knockdowns, 1 × 105 cells were seeded in a six-well plate 24 hours prior to transducing with 1 ml lentiviral particles expressing shRNAs in a total volume of 2 ml of appropriate media supplemented with 10 µg/ml polybrene for 16 hours.  Cells were then subjected to puromycin selection (1 µg/ml) for 3 days, and maintained in normal growth media afterward.

tag: genotype/variation

value: Non-target control

value: Mammary epithelial cells transformed by HRasG12V


title: Compound C treated parasites 18 hpi time point

description:
Compound C treated parasites time point 3 of 7. Biological replicate 1 of 1.
Compound_C_18


title: Compound C treated parasites 24 hpi time point

description:
Compound C treated parasites time point 4 of 7. Biological replicate 1 of 1.
Compound_C_24


title: Bromo+/- rep2

value: Bromo+/-


title: s0686_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well590


title: s0684_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well588


title: s0685_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well589


title: s0687_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well591


title: Non-target control rep1


title: Bromo+/- rep1


title: s0682_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well586


title: s0680_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well584


title: s0681_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well585


title: Compound C treated parasites 30 hpi time point

description:
Compound C treated parasites time point 5 of 7. Biological replicate 1 of 1.
Compound_C_30


title: Compound C treated parasites 12 hpi time point

description:
Compound C treated parasites time point 2 of 7. Biological replicate 1 of 1.
Compound_C_12


title: s0679_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well583


title: WGBS KO27_3

city: Planegg

first: Tatjana

last: Kleine

address: Großhaderner Straße 2

department: Biologie I, Botanik

institute: Ludwig-Maximilians-Universität München

library_source: genomic

data_processing:
Galaxy platform
adaptors were removed with Trimmomatic (Bolger et al., 2014)
sequencing quality was accessed with FastQC (http://www.bioinformatics.babraham.ac.uk/projects/fastqc/)
The Bismark software (Krueger and Andrews, 2011) was used to perform alignments against the TAIR10 genome with standard settings
After removing duplicates, differential methylated regions (DMRs) have been determined with an in-house script of Novogene, or were determined with MethylDackel (https://github.com/dpryan79/MethylDackel) and subsequent usage of Metilene (Juhling et al., 2016).
Genome_build: TAIR10
Supplementary_files_format_and_content: xls file contains DMR (differential methylated regions) of KO27 versus Col-0

molecule: genomic DNA

organism: Arabidopsis thaliana

source_name: 26-d-old rbp-ko-1, grown under LD conditions

growth_protocol: The Arabidopsis plants were grown on soil for 26 days under long-day conditions (16 h light, 8 h dark)

extract_protocol:
Genomic DNA was extracted from 26-d-old plants grown under LD condition using the Qiagen Dneasy Plant Mini Kit.
DNA fragments were treated twice with bisulfite using EZ DNA Methylation-GoldTM Kit (Zymo Research). The resulting single-stranded DNA fragments were PCR amplified using KAPA HiFi HotStart Uracil + ReadyMix (2x).

tag: genotype


title: WGBS Col-0_3

source_name: 26-d-old Col-0, grown under LD conditions


title: WGBS KO27_1


title: WGBS KO27_2


title: WGBS Col-0_2


title: s0677_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well581


title: WGBS Col-0_1


title: rbp-ko-2_2

data_processing:
Galaxy platform
adaptors were removed with Trimmomatic (Bolger et al., 2014)
sequencing quality was accessed with FastQC (http://www.bioinformatics.babraham.ac.uk/projects/fastqc/)
Reads were mapped to the Arabidopsis genome (TAIR10) with the gapped-read mapper RNA STAR (Dobin et al., 2013).
Reads were counted with featureCounts (Liao et al., 2014) with the help of the gene annotation in Araport11 (www.araport.org/data/araport11).
Genome_build: TAIR10
Supplementary_files_format_and_content: tab-delimited files include read count values for each sample

source_name: 26-d-old rbp-ko-2, grown under LD conditions

growth_protocol: The Arabidopsis Col-0 and mutant plants were grown on soil for 26 days under long-day conditions (16 h light, 8 h dark)

extract_protocol:
Total RNA from plants was isolated using Trizol (Invitrogen, Carlsbad, USA) and purified using Direct-zol™ RNA MiniPrep Plus columns (Zymo Research, Irvine, USA) according to the manufacturer’s instructions. RNA integrity and quality was assessed by an Agilent 2100 Bioanalyzer (Agilent, Santa Clara, USA).
Illumina Tru-Seq

value: leaves


title: s0683_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well587

value: cancer cells


title: rbp-ko-2_3


title: s0675_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well579

value: Tumor


title: Compound C treated parasites 6 hpi time point

description:
Compound C treated parasites time point 1 of 7. Biological replicate 1 of 1.
Compound_C_6


title: rbp-ko-2_1


title: rbb-ko-1_1


title: s0674_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well578


title: s0672_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well576


title: s0678_mouse4_HBRX2344_Tumor_2cells

description:
Fluidigm C1 platform
well582


title: s0671_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well575


title: rbb-ko-1_3


title: s0673_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well577


title: rbb-ko-1_2


title: s0669_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well573


title: s0676_mouse4_HBRX2344_Tumor_1cells

description:
Fluidigm C1 platform
well580


title: Col-0_control_3


title: Col-0_control_2


title: s0670_mouse4_HBRX2344_Tumor_3cells

description:
Fluidigm C1 platform
well574


title: s0665_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well569

value: Metastases


title: s0668_mouse3_MDAMB231_Metastases_3cells

description:
Fluidigm C1 platform
well572


title: s0667_mouse3_MDAMB231_Metastases_0cells

description:
Fluidigm C1 platform
well571


title: Col-0_control_1


title: Idh2R172K/+ #1

city: Toronto

first: Tak

last: Mak

state: ON

address: 610 University Ave

department: The Campbell Family Institute for Breast Cancer Research

country: Canada

institute: Princess Margaret Cancer Centre, University Health Network

data_processing:
The raw sequencing reads were processed for quality control, mapping (to mouse genome build GRCm38), and UMI (unique molecular identifier) count matrix assembly using the CellRanger bioinformatics pipeline v2.1.0 provided by 10xGenomics.
Seurat version 2.1.0 was used for normalization, dimensionality reduction, and clustering analysis. At later stages, we also took advantage of the improved visualization features of a more recent Seurat version (3.2.3).
Assembly: mm10
Supplementary files format and content: Barcode, gene, and expression matrix

source_name: Lin-cKit+Sca1+  cells

extract_protocol:
To isolate LSK cells, the femur, tibia and humerus bones were dissected from mice with genotypes of interest. The bone marrow cells were isolated by flushing in 5 mL MACS buffer (phosphate-buffered saline without MgCl2 and CaCl2, supplemented with 0.5% bovine serum albumin and 2mM EDTA pH8.0) using syringes with 26 gauge needles. The isolated cells were filtered through a 70 µm nylon mesh. The cells were centrifuged at 300 x g for 5 minutes at 4°C, and resuspended in 1 mL red blood cell lysis buffer (Sigma) followed by incubation for 5 minutes at ambient temperature. 10 mL cold buffer was added, the cells were centrifuged at 300 x g for 5 minutes a 4°C, and resuspended in 1 mL cold buffer prior to counting on a ViCell Counter. The cells were then washed with 5 mL buffer, centrifuged at 300 x g for 5 minutes a 4°C, and process for lineage depletion using the Mouse Lineage Cell Depletion Kit (Miltenyi Biotec # 130-090-858), following the manufacturer’s instructions: cells were resuspended at 2.5 x 108 cells/mL in MACS buffer, and 10 µl of biotinylated mouse lineage antibody cocktail was added per 10 million cells, followed by incubation on ice for 15 minutes. 30 µl of MACS buffer and 20 µl of streptavidin-conjugated magnetic microbeads were added per 10 million cells, followed by incubation ice for 15 minutes, and filtering through a 30 µm nylon mesh in 10 mL cold MACS buffer. The cells were centrifuged at 300 x g for 5 minutes at 4°C, resuspended in 1 mL cold MACS buffer, and processed for lineage separation using an AutoMACS Pro instrument (Miltenyi Biotec) using the “Deplete” settings. Lineage-negative cells were collected.  Cells were incubated for 15 minutes on ice with MACS buffer containing 1:100 Fc blocking antibody (Tonbo Biosciences # 70-0161-M001). Cells were stained with the following antibodies in FACS or MACS buffer for 30 minutes on ice: cKIT-PE/Cy7 (BioLegend # 105814; 1:100), SCA1-FITC (BioLegend # 122505, 1:100), STREPTAVIDIN- APC/Cy7 (BioLegend # 405208; 1:50), alongside DAPI (2ug/mL). After staining, cells were washed twice with cold buffer, resuspended, and sorted using a FACSAria II fluorescence-activated cell sorter (BD Biosciences) into MACS buffer at 4°C.
Libraries were prepared using the 10X Genomics Chromium Single Cell 3’ v2 Chemistry Reagent Kit, as per the parameters recommended by 10X Genomics.

value: Bone marrow


title: Idh2R140Q/+ #2


title: Idh2R172K/+ #2


title: s0663_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well567


title: s0662_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well566


title: Idh2R140Q/+ #1


title: WT #2

value: +/+;Vav-Cre


title: Idh1R132H/+ #2


title: s0661_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well565


title: s0664_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well568


title: s0659_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well563


title: Idh1R132H/+ #1


title: G-CSF_rep1

city: Suita

first: Daisuke

last: Okuzaki

state: Osaka

address: Yamadaoka 3-1

department: Immunology Frontier Research Center

country: Japan

institute: Osaka univ.

description: in vitro MDSCs differentiated with G-CSF

data_processing:
Sequencing was performed on an Illumina HiSeq2500 platform in a 75-base single-end mode.
The sequenced reads were mapped to the mouse reference genome sequences (mm10) using TopHat version 2.0.13 in combination with Bowtie2 version 2.2.3 and SAMtools version 0.1.19.
The fragments per kilobase of exon per million mapped fragments (FPKMs) were calculated using Cufflinks version 2.2.1.
Genome_build: mm10
Supplementary_files_format_and_content: FPKM processed value in csv file

extract_protocol:
Total RNA was isolated from the liver tissues using the Rneasy® Mini Kit (QIAGEN, Hilden, Germany)。
Library preparation was performed using a TruSeq stranded mRNA sample prep kit (Illumina, San Diego, CA) according to the manufacturer’s instructions.

value: Myeloid-derived suppressor cells


title: s0666_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well570


title: G-CSF_rep2

source_name: in vitro MDSCs differentiated with G-CSF


title: Ctrl_rep2

description: in vitro MDSCs differentiated without G-CSF


title: WT #1


title: s0656_mouse3_MDAMB231_Metastases_3cells

description:
Fluidigm C1 platform
well560


title: Ctrl_rep1

source_name: in vitro MDSCs differentiated without G-CSF


title: s0657_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well561


title: s0658_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well562


title: monoculture_HUVEC_EV_3

city: New Orleans

first: Tina

middle: M

last: O'Grady

state: LA

address: 1430 Tulane Ave., SL79

department: Pathology

institute: Tulane Health Sciences Center

description: small RNA

data_processing:
Cutadapt to remove adaptors and first 3 nucleotides. Only reads of at least 15 nt after trimming were retained.
Reads were aligned to RefSeq human rRNA sequences with STAR v.2.5.2b and rRNA-mapping reads were discarded.
Using mirDeep2 v.0.0.8 reads were mapped to the human genome (GRCh38) and reads mapping to miRBase miRs were quantified.
Genome_build: GRCh38
Supplementary_files_format_and_content: miRDeep2 output .csv files with miR read counts

source_name: HUVEC EV

growth_protocol: Cells were amplified in a 37°C incubator with 5% CO2 in endothelial growth media-2 (EGM-2) with 5% FBS and 5 ng/ml rhFGF and without heparin. Cells between passages 2 and 8 were used for all experiments.

extract_protocol:
QIAGEN miRNeasy kit
SMARTer smRNA-Seq Kit

treatment_protocol: Twenty-four hours before initiating coculture, HUVEC cells were rinsed with DPBS and placed in EGM-2 media with 1% exosome-depleted FBS and 5 ng/ml rhFGF and without heparin, and MDA-MB-231 cells were rinsed with DPBS and placed in DMEM with 5% exosome-depleted FBS. To initiate coculture, MDA-MB-231 cells were treated with trypsin, rinsed twice in DPBS and resuspended in EGM-2 media with 1% exosome-depleted FBS and 5 ng/ml rhFGF and without heparin. HUVEC cells were rinsed twice in DPBS and placed in EGM-2 media with 1% exosome-depleted FBS and 5 ng/ml rhFGF and without heparin. MDA-MB-231 cells were added to plates of adherent HUVEC cells in a 1:1 ratio of near-confluent plates. EVs were purified by ultracentrifugation from the conditioned media after 48 hours.  To purify HUVEC cells and their EVs from mixed populations Dynabeads CD31 Endothelial Cell magnetic beads were used. Cells were purified according to manufacturer’s instructions. CD31+ EVs were purified by resuspending the ultracentrifugation EV pellet in Dynabeads Isolation buffer, adding to 50 µl of washed beads per T-175 of culture, incubating overnight at 4°C with rotation, washing twice with Isolation buffer, then resuspending beads with attached EVs in lysis buffer.

value: monoculture

tag: compartment

value: extracellular vesicles

value: HUVEC


title: s0654_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well558


title: s0655_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well559


title: monoculture_HUVEC_EV_1

description: small RNA


title: s0652_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well556


title: s0653_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well557


title: s0651_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well555


title: s0660_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well564


title: hCM-HAND1OE_ChIP_HAND1

city: Guangzhou

first: Lei

last: Jiang

address: No.106 Zhongshan 2nd Road

country: France

institute: Guangdong Provincial People's Hospital

data_processing:
Illumina Casava1.7 software used for basecalling.
Single-end reads were mapped to the hg19 reference genome using the bwa2 mem. The duplicated reads were removed using the Picard Toolkit (https://broadinstitute.github.io/picard/), whereas the reads with a quality lower than 20 were filtered. The ChIP-seq peaks were called using the default (narrow) setting in MACS2.
Genome_build: hg19
Supplementary_files_format_and_content: hic forrmat for visualization in Juicebox
Supplementary_files_format_and_content: bigwig format for visualization in IGV or washU Genome Browser

source_name: iPSC-derived cardiomyocyte

growth_protocol: The left ventricular (LV) heart samples were collected from DCM patients during surgery and the LV tissues were immediately dissected and snap frozen in liquid nitrogen.

extract_protocol: ChIP-seq: Chromatin (8 μg) was precleared with protein A agarose beads (Invitrogen). Genomic DNA regions of interest were precipitated using 4 μg of antibody against H3K27Ac (Active Motif, Cat# 39133) or 10 μg of antibody again HAND1 (Abconal, Cat#A9855). The complexes were washed, eluted from the beads with 1% SDS buffer and subjected to RNase and proteinase K treatment overnight at 65°C. The ChIPed DNA was purified by phenol-chloroform extraction and ethanol precipitation. Genomic DNA (Input) was prepared by treating aliquots of chromatin with RNase, proteinase K in a similar way as ChIPed DNA. Illumina sequencing libraries were prepared from the ChIP products by the standard consecutive enzymatic steps of end-repair, A tailing, and adaptor ligation using the KAPA Hyper Prep Kit (Roche, CKK8504). Following a final PCR amplification step, the PCR products were purified and the size was selected by 0.5X SPRI followed by 0.9X SPRI beads.

value: iPSC-derived cardiomyocyte

tag: method

value: ChIP-Seq

tag: factor

tag: condition

value: Transfected with HAND1 overexpressing adenovirus


title: s0650_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well554


title: hCM-Ctrl_ChIP_HAND1

value: Transfected with control adenovirus


title: coculture_HUVEC_EV_2

description: small RNA

value: coculture


title: s0649_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well553


title: s0644_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well548


title: hCM-Ctrl_ChIP_H3k27ac_rep2


title: s0645_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well549


title: s0648_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well552


title: s0643_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well547


title: coculture_HUVEC_EV_3

description: small RNA


title: s0642_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well546


title: s0641_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well545


title: s0647_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well551


title: monoculture_HUVEC_EV_2

description: small RNA


title: hCM-Ctrl_RNA_rep2

data_processing:
Illumina Casava1.7 software used for basecalling.
The reads were mapped to hg19 using STAR. The reads mapped to gene exon regions were counted using featureCounts. Differential expression was determined using DESeq2
Genome_build: hg19
Supplementary_files_format_and_content: hic forrmat for visualization in Juicebox
Supplementary_files_format_and_content: bigwig format for visualization in IGV or washU Genome Browser

extract_protocol: RNA-seq: Total RNA was extracted using Trizol (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions. Approximately 1 µg total RNA per sample was depleted from rRNA with the Ribo-Zero™ Magnetic Kit (Epicentre). The retrieved RNA was subjected to fragmentation by adding the First Strand Master Mix (Invitrogen). First-strand cDNA was generated using random primers and reverse transcription, followed by a second-strand cDNA synthesis. The synthesized cDNA was subjected to end-repair and was 3’ adenylated. The adapters were ligated to the ends of these 3’ adenylated cDNA fragments. A total of 10 rounds of PCR with PCR Primer Cocktail and PCR Master Mix were performed to amplify the cDNA fragments. The PCR products were purified and size selected by 0.5X SPRI beads followed by 0.9X SPRI beads. The identity of the final library was verified by the distribution of the fragments size using the Agilent 2100 bioanalyzer and quantified by the Qubit High sensitivity assay. The Qualified libraries were sequenced pair end on the Illumina HiSeq Xten (150 bp, pair-end).

value: RNA-Seq


title: hCM-Ctrl_ChIP_H3K27ac_rep1


title: hCM-HAND1OE_RNA_rep2


title: coculture_HUVEC_EV_1

description: small RNA


title: hCM-HAND1OE_RNA_rep1


title: s0639_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well543


title: s0638_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well542


title: s0637_mouse3_MDAMB231_Metastases_5cells

description:
Fluidigm C1 platform
well541


title: hCM-Ctrl_RNA_rep1


title: DCM-7_ChIP

source_name: heart tissue

value: heart

value: dilated cardiomyopathy


title: DCM-10_ChIP


title: DCM-9_ChIP


title: DCM-5_ChIP


title: s0634_mouse3_MDAMB231_Metastases_3cells

description:
Fluidigm C1 platform
well538

value: cancer cells


title: DCM-4_ChIP


title: s0635_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well539


title: DCM-6_ChIP


title: s0636_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well540


title: s0640_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well544


title: s0631_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well535


title: s0633_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well537


title: s0632_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well536


title: DCM-2_ChIP


title: DCM-1_ChIP


title: DCM-3_ChIP


title: NF-10_ChIP


title: DCM-8_ChIP


title: s0630_mouse3_MDAMB231_Metastases_0cells

description:
Fluidigm C1 platform
well534


title: s0627_mouse3_MDAMB231_Metastases_2cells

description:
Fluidigm C1 platform
well531


title: s0629_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well533


title: NF-8_ChIP

value: non-failing


title: NF-9_ChIP


title: s0626_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well530

value: Metastases


title: NF-7_ChIP


title: s0625_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well529


title: NF-5_ChIP


title: NF-6_ChIP


title: s0624_mouse3_MDAMB231_Metastases_0cells

description:
Fluidigm C1 platform
well528


title: s0623_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well527


title: s0622_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well526


title: s0646_mouse3_MDAMB231_Metastases_3cells

description:
Fluidigm C1 platform
well550


title: s0621_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well525


title: NF-3_ChIP


title: s0628_mouse3_MDAMB231_Metastases_3cells

description:
Fluidigm C1 platform
well532


title: NF-4_ChIP


title: NF-1_ChIP


title: HKC-RNA-08102018

city: Houston

first: Cheryl

middle: L

last: Walker

state: TX

address: 1 Baylor Plaza

department: Center for Precision Environmental Health

institute: Baylor College of Medicine

data_processing:
Samples were trimmed using TrimGalore!
After trimming samples were aligned to hg38 using HISAT2
Features were quantified using featureCounts
Genome_build: hg38
Supplementary_files_format_and_content: tab-delimited text files include featureCounts values for each Sample

source_name: normal kidney cells

growth_protocol: Cells grown in Dulbecco's Modified Eagle Medium (DMEM, Gibco) supplemented with 10% Fetal Bovine Serum (FBS).

extract_protocol:
Total RNA was extracted using TRIzol reagent (Ambion) and cleaned up using RNeasy Mini Kit (Qiagen) according to the manufacturer’s instructions.
RNA libraries were prepared with QIAseq Stranded Total RNA library Kit (Qiagen) using 100 ng input RNA

value: Wild-type

value: HKC


title: D7-RNA-08092018


title: NF-2_ChIP


title: D7-RNA-08102018


title: s0616_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well520


title: HKC-RNA-08092018


title: s0618_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well522


title: s0620_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well524


title: s0614_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well518


title: s0619_mouse3_MDAMB231_Metastases_1cells

description:
Fluidigm C1 platform
well523


title: E5-RNA-08092018

source_name: clear-cell renal cell carcinoma (ccRCC) cells