description: L3_W221: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ilf2 knockdown (T0221), replicate 2


status: Public on Jul 15 2022

type: SRA

city: Toronto

first: Ulrich

last: Braunschweig

state: Ontario

address: 160 College Street

department: Donnelly Centre

country: Canada

institute: University of Toronto

description: L3_W195: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hes6 knockdown (T0195), replicate 2

library_source: transcriptomic

data_processing:
CASAVA 1.8 was used for base calling.
Fastq files contain demultiplexed reads which were assigned to the appropriate treatment by matching to expected forward and reverse barcodes (sequenced in dedicated reads; not supplied).
Forward and reverse event reads were mapped to custom junction libraries representing all expected splice variants (supplied as processed files), using bowtie with settings --best -v 3 -k 1 --trim3 26 --trim5 10. Trimming was done to remove lower-quality, uninformative ends and because forward reads had a missing base call at position 11 due to a power outage. Junction libraries were first constructed from NCBIm37/mm9 gene annotations, and then refined based on the results of de novo mapping of the reads from one full Illumina lane from each cell line using tophat (default settings with -i 40 and providing Ensembl transcript annotations for NCBIm37), after quality trimming (minimum MAPQ of 33) from the 3'-end with the fastx toolkit. Mapped reads were counted per junction.
Alternative splicing analysis: Percent-spliced-in (PSI) values were calculated for each alternative exon, or part thereof in the case of alternative 5'-/3'-splice sites ('event'), from read tallies as follows: PSI was calculated independently from forward and reverse reads as the percentage of reads supporting inclusion divided by the total number of reads for the event. For alternative 5'/3'-ss events that were part of an alternative exon (Foxm1.A2, Mta1.A1, Uspl1.A3), the PSI was instead calculated with reference to the total reads supporting inclusion of that exon in order to assess independent regulation of alternative splice site usage. Only the read direction in which all reads unambiguously supported either inclusion or exclusion of an event was used, and the average if that applied for both. Exploratory analysis revealed that PSI values showed low-level batch effects per 96-well plate which we moderated by subtracting a weighted plate median in which negative controls (siNT and mock treatment) were given 20x more weight than other samples. To derive variances, and because PSI values are not nearly normally distributed but roughly follow a beta distribution, we elected to fit a beta distribution to each pair of replicate treatments, as well as to all negative controls from both replicates, using maximum-likelihood fitting as implemented in the fitdistr() function from the R package MASS {Venables & Ripley, Modern Applied Statistics with S (2002)}. Iterative optimization of shape parameters was initiated with settings x=PSI, shape1=1, shape2=1, method=”L-BFGS-B”, lower=0.01, and upper=mean number of reads supporting each PSI value. A modified Strictly Standardized Mean Difference (SSMD {Zhang, Genomics (2007)}) was then calculated based on the formula: SSMD = (μt – μc)/SQRT(vart + varc) where μt and μc are the means (corresponding to the PSI), and vart and varc the variances of the beta distributions fitted to the treatment replicates and negative controls, respectively. Events for which not all reads from at least one direction were informative (Mff.A2, Tead1.A2) were excluded from further analysis, as were events in individual treatments with less than 20 reads in one or both replicates (~9% of all event x treatment combinations). Additionally, the following events were removed from further splicing analysis: expression only events or constitutive exons, Fgf4, Gapdh, Srpk2, Srrm4; events with consistently low read counts: Atg13.A1, H2afy.A2, Tcf7l1 (N2A only), Dnmt3b (N2A only); or because measured inclusion was biased by differential length of isoforms:, Fgfr1, Sall4.
Expression analysis: Read counts from all splice variants of each gene were used to estimate relative mRNA expression levels, reads per million reads (RPMs). Differential expression analysis based on raw read counts was performed using the generalized linear models workflow from the R package edgeR. Plate, position (edge/interior) and treatment were used as design factors (where all treatments of each type of control were treated as replicates.) Models fitted using estimateDisp() to estimate the common, trended, and tag-wise dispersion for the CGR8 and N2A data separately. Subsequently, differences attributable to treatment, plate, or position contrasts were extracted with glmLRT() and represented as log2-fold changes with associated FDR. Fold-changes for treatments are relative to the siNT and mock-treatment controls.
Genome_build: mm10
Supplementary_files_format_and_content: Processed files are either tab-delimited  tables (.tab) or FASTA files (.fa).   JunctionLibrary_design.csv contains information about sequence and 1-based coordinates of all elements that make up each event, along with vast-tools ID (vastEVENT) and information about how elements are connected. See https://github.com/UBrau/SPARpipe for information about library design.  Junctions108_11-101_fwd.fa and Junctions108_11-101_rev.fa contain all possible junctions given the event elements and read length for forward and reverse reads, respectively.  Events108_11-101.tab indicates which junctions were used to calculate PSI for each element.  Treatments_fullScreen.csv contains information about all 1536 control and experimental knockdowns.  ExprContrasts_fullScreen.csv contains the design factors for differential expression analysis.  ReadsPerEvents.tab.gz contains raw read counts per treatment and event element.  PSI.raw.tab.gz contains raw PSI for each treatment and event element.  dPSI.norm.tab.gz contains normalized and filtered dPSI.  SSMD.norm.tab.gz contains normalized and filtered SSMD.  Expression.Treatment.tab.gz contains results from differential expression analysis (differential expression due to treatment).

molecule: total RNA

organism: Mus musculus

source_name: Mouse neuroblastoma cells

growth_protocol: Mouse neuroblastoma (N2A) cells were grown in DMEM supplemented with 10% FBS, sodium pyruvate, MEM non-essential amino acids, and penicillin/streptomycin and maintained at 37°C with 5% CO2.

extract_protocol:
Forty-eight hours post-transfection, total RNA were purified from cultured cells using RNeasy Plus 96 Kit (Qiagen), as per the manufacturer’s instructions.
For each sample, a multiplex RT-PCR assay was first applied to simultaneously amplify 108 AS and/or expression events in a single reaction. The multiplex RT-PCR reaction was carried out in 96-well plates using the OneStep RT-PCR kit (Qiagen) as recommended by the manufacturer, with the following changes: reactions were performed in a volume of 20 uL with 2 uL of the purified total RNA as input, and a mixture of 50 pairs of primers was added to each reaction with a final concentration of 0.25 uM for each individual forward and reverse primer. Four identical Veriti 96-well Thermal Cyclers (Applied Biosystems) were used with the following conditions: 50°C for 30 minutes, 95°C for 15 minute, 30 cycles of 94°C for 40 seconds, 58°C for 1 minute (slow ramp rate), 72°C for 3 minutes, and a final extension step at 72°C for 10 minutes. Two sets of barcodes were incorporated into forward and reverse primers, respectively, after the universal adaptors and added to the amplicons in the second PCR reaction to allow demultiplexing all reads that were derived from a particular treatment. Primers sequences were: forward primer, AATGATACGGCGACCACCGAGATCTACACNNNNNNNNACACTCTTTCCCTACACGACGCTCTTCCGATCT (N denotes i5 barcode); reverse primer, CAAGCAGAAGACGGCATACGAGATNNNNNNNNGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT (N denotes i7 primer). The second PCR was performed using Phusion High-Fidelity DNA Polymerase (Thermo Scientific), as per the manufacturer’s instructions. For each 20 uL of reaction, 1 uL of the multiplex RT-PCR reaction products was used as templates. The thermal cycling conditions were as follows: 98°C for 30 seconds, 15 cycles of 98°C for 10 seconds, 65°C for 30 seconds, 72°C for 30 seconds, and a final extension step at 72°C for 5 minutes. The resulting libraries were pooled and sequenced.

treatment_protocol: Twenty-four hours prior to transfection, N2A cells were seeded in 96-well plates at 5000 cells per well. Cells were transfected with the SMARTpool siRNAs at 50 nM final concentration using DharmaFECT1 reagent (Dharmacon), as recommended by the manufacturer.

tag: tissue

value: Mouse neuroblastoma cells

tag: cell line


description: L3_W196: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kif4 knockdown (T0196), replicate 2


description: L3_W189: SPAR-seq of 108 multi-exon gene regions in N2A cells, Chd2 knockdown (T0189), replicate 2


description: L3_W187: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dbp knockdown (T0187), replicate 2


description: L3_W191: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cbx1 knockdown (T0191), replicate 2


description: L3_W186: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dclre1b knockdown (T0186), replicate 2


description: L3_W185: SPAR-seq of 108 multi-exon gene regions in N2A cells, Atf6b knockdown (T0185), replicate 2


description: L3_W202: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ssh1 knockdown (T0202), replicate 2


description: L3_W194: SPAR-seq of 108 multi-exon gene regions in N2A cells, Aktip knockdown (T0194), replicate 2


description: L3_W190: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ep300 knockdown (T0190), replicate 2


description: L3_W199: SPAR-seq of 108 multi-exon gene regions in N2A cells, Foxn2 knockdown (T0199), replicate 2


description: L3_W180: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cirbp knockdown (T0180), replicate 2


description: L3_W183: SPAR-seq of 108 multi-exon gene regions in N2A cells, Chd4 knockdown (T0183), replicate 2


description: L3_W184: SPAR-seq of 108 multi-exon gene regions in N2A cells, Clspn knockdown (T0184), replicate 2


description: L3_W182: SPAR-seq of 108 multi-exon gene regions in N2A cells, Med14 knockdown (T0182), replicate 2


description: L3_W179: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dhx16 knockdown (T0179), replicate 2


description: L3_W181: SPAR-seq of 108 multi-exon gene regions in N2A cells, Med26 knockdown (T0181), replicate 2


description: L3_W176: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ezh2 knockdown (T0176), replicate 2


description: L3_W178: SPAR-seq of 108 multi-exon gene regions in N2A cells, Elavl3 knockdown (T0178), replicate 2


description: L3_W177: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dek knockdown (T0177), replicate 2


description: L3_W216: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prmt1 knockdown (T0216), replicate 2


description: L3_W173: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cenpe knockdown (T0173), replicate 2


description: L3_W174: SPAR-seq of 108 multi-exon gene regions in N2A cells, Celf2 knockdown (T0174), replicate 2


description: L3_W188: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cops5 knockdown (T0188), replicate 2


description: L3_W172: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cdc5l knockdown (T0172), replicate 2


description: L3_W171: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eif3g knockdown (T0171), replicate 2


description: L3_W192: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0192), replicate 2


description: L3_W168: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ahctf1 knockdown (T0168), replicate 2


description: L3_W169: SPAR-seq of 108 multi-exon gene regions in N2A cells, E2f3 knockdown (T0169), replicate 2


description: L3_W164: SPAR-seq of 108 multi-exon gene regions in N2A cells, Csde1 knockdown (T0164), replicate 2


description: L3_W165: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cenpb knockdown (T0165), replicate 2


description: L3_W166: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cbx3 knockdown (T0166), replicate 2


description: L3_W170: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dpf2 knockdown (T0170), replicate 2


description: L3_W158: SPAR-seq of 108 multi-exon gene regions in N2A cells, Bptf knockdown (T0158), replicate 2


description: L3_W156: SPAR-seq of 108 multi-exon gene regions in N2A cells, Crebbp knockdown (T0156), replicate 2


description: L3_W160: SPAR-seq of 108 multi-exon gene regions in N2A cells, Col4a3 knockdown (T0160), replicate 2


description: L3_W167: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cenpc1 knockdown (T0167), replicate 2


description: L3_W175: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dnmt3b knockdown (T0175), replicate 2


description: L3_W163: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dctn3 knockdown (T0163), replicate 2


description: L3_W157: SPAR-seq of 108 multi-exon gene regions in N2A cells, Elavl2 knockdown (T0157), replicate 2


description: L3_W159: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eef1a1 knockdown (T0159), replicate 2


description: L3_W153: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0153), replicate 2


description: L3_W161: SPAR-seq of 108 multi-exon gene regions in N2A cells, Chaf1a knockdown (T0161), replicate 2


description: L3_W152: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eif3b knockdown (T0152), replicate 2


description: L3_W147: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ctnnbl1 knockdown (T0147), replicate 2


description: L3_W150: SPAR-seq of 108 multi-exon gene regions in N2A cells, H2afj knockdown (T0150), replicate 2


description: L3_W146: SPAR-seq of 108 multi-exon gene regions in N2A cells, Elavl1 knockdown (T0146), replicate 2


description: L3_W151: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ddx20 knockdown (T0151), replicate 2


description: L3_W149: SPAR-seq of 108 multi-exon gene regions in N2A cells, Drap1 knockdown (T0149), replicate 2


description: L3_W148: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cnbp knockdown (T0148), replicate 2


description: L3_W162: SPAR-seq of 108 multi-exon gene regions in N2A cells, Elavl4 knockdown (T0162), replicate 2


description: L3_W155: SPAR-seq of 108 multi-exon gene regions in N2A cells, Med23 knockdown (T0155), replicate 2


description: L3_W138: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ubr2 knockdown (T0138), replicate 2


description: L3_W131: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cbx4 knockdown (T0131), replicate 2


description: L3_W137: SPAR-seq of 108 multi-exon gene regions in N2A cells, Fancd2 knockdown (T0137), replicate 2


description: L3_W142: SPAR-seq of 108 multi-exon gene regions in N2A cells, Suz12 knockdown (T0142), replicate 2


description: L3_W133: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dctn2 knockdown (T0133), replicate 2


description: L3_W136: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm45 knockdown (T0136), replicate 2


description: L3_W129: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ewsr1 knockdown (T0129), replicate 2


description: L3_W139: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hdac9 knockdown (T0139), replicate 2


description: L3_W143: SPAR-seq of 108 multi-exon gene regions in N2A cells, Chd1 knockdown (T0143), replicate 2


description: L3_W134: SPAR-seq of 108 multi-exon gene regions in N2A cells, Larp4b knockdown (T0134), replicate 2


description: L3_W141: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0141), replicate 2


description: L3_W119: SPAR-seq of 108 multi-exon gene regions in N2A cells, Clasp2 knockdown (T0119), replicate 2


description: L3_W135: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0135), replicate 2


description: L3_W123: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0123), replicate 2


description: L3_W132: SPAR-seq of 108 multi-exon gene regions in N2A cells, Fubp1 knockdown (T0132), replicate 2


description: L3_W118: SPAR-seq of 108 multi-exon gene regions in N2A cells, Trdmt1 knockdown (T0118), replicate 2


description: L3_W130: SPAR-seq of 108 multi-exon gene regions in N2A cells, Csda knockdown (T0130), replicate 2


description: L3_W127: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ints6 knockdown (T0127), replicate 2


description: L3_W126: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cd2bp2 knockdown (T0126), replicate 2


description: L3_W125: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eed knockdown (T0125), replicate 2


description: L3_W122: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eif3a knockdown (T0122), replicate 2


description: L3_W121: SPAR-seq of 108 multi-exon gene regions in N2A cells, Csad knockdown (T0121), replicate 2


description: L3_W144: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nuf2 knockdown (T0144), replicate 2


description: L3_W128: SPAR-seq of 108 multi-exon gene regions in N2A cells, Daxx knockdown (T0128), replicate 2


description: L3_W117: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ercc2 knockdown (T0117), replicate 2


description: L3_W113: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dnmt1 knockdown (T0113), replicate 2


description: L3_W112: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ezh1 knockdown (T0112), replicate 2


description: L3_W140: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ccnb1 knockdown (T0140), replicate 2


description: L3_W109: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dr1 knockdown (T0109), replicate 2


description: L3_W114: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ccnl1 knockdown (T0114), replicate 2


description: L3_W105: SPAR-seq of 108 multi-exon gene regions in N2A cells, Chrac1 knockdown (T0105), replicate 2


description: L3_W120: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cnot4 knockdown (T0120), replicate 2


description: L3_W104: SPAR-seq of 108 multi-exon gene regions in N2A cells, F630043A04Rik knockdown (T0104), replicate 2


description: L3_W116: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dbr1 knockdown (T0116), replicate 2


description: L3_W099: SPAR-seq of 108 multi-exon gene regions in N2A cells, Celf1 knockdown (T0099), replicate 2


description: L3_W124: SPAR-seq of 108 multi-exon gene regions in N2A cells, Btaf1 knockdown (T0124), replicate 2


description: L3_W097: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0097), replicate 2


description: L3_W110: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kdm1a knockdown (T0110), replicate 2


description: L3_W108: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dctn1 knockdown (T0108), replicate 2


description: L3_W111: SPAR-seq of 108 multi-exon gene regions in N2A cells, E2f6 knockdown (T0111), replicate 2


description: L3_W107: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cenpa knockdown (T0107), replicate 2


description: L3_W115: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ciz1 knockdown (T0115), replicate 2


description: L3_W103: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ctcf knockdown (T0103), replicate 2


description: L3_W102: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dmtf1 knockdown (T0102), replicate 2


description: L3_W092: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smarcc2 knockdown (T0092), replicate 2


description: L3_W089: SPAR-seq of 108 multi-exon gene regions in N2A cells, Htatsf1 knockdown (T0089), replicate 2


description: L3_W101: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dnmt3a knockdown (T0101), replicate 2


description: L3_W106: SPAR-seq of 108 multi-exon gene regions in N2A cells, Esrra knockdown (T0106), replicate 2


description: L3_W088: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cenpn knockdown (T0088), replicate 2


description: L3_W145: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cstf3 knockdown (T0145), replicate 2


description: L3_W100: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cenph knockdown (T0100), replicate 2


description: L3_W087: SPAR-seq of 108 multi-exon gene regions in N2A cells, Add3 knockdown (T0087), replicate 2


description: L3_W083: SPAR-seq of 108 multi-exon gene regions in N2A cells, Klf9 knockdown (T0083), replicate 2


description: L3_W084: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ddx11 knockdown (T0084), replicate 2


description: L3_W093: SPAR-seq of 108 multi-exon gene regions in N2A cells, Brpf1 knockdown (T0093), replicate 2


description: L3_W094: SPAR-seq of 108 multi-exon gene regions in N2A cells, Wbp7 knockdown (T0094), replicate 2


description: L3_W091: SPAR-seq of 108 multi-exon gene regions in N2A cells, Luc7l3 knockdown (T0091), replicate 2


description: L3_W096: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0096), replicate 2


description: L3_W095: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zmynd8 knockdown (T0095), replicate 2


description: L3_W154: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cbx8 knockdown (T0154), replicate 2


description: L3_W098: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cbx5 knockdown (T0098), replicate 2


description: L3_W081: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cebpg knockdown (T0081), replicate 2


description: L3_W079: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mlf1ip knockdown (T0079), replicate 2


description: L3_W085: SPAR-seq of 108 multi-exon gene regions in N2A cells, Aptx knockdown (T0085), replicate 2


description: L3_W077: SPAR-seq of 108 multi-exon gene regions in N2A cells, Top1mt knockdown (T0077), replicate 2


description: L3_W078: SPAR-seq of 108 multi-exon gene regions in N2A cells, Arid4b knockdown (T0078), replicate 2


description: L3_W076: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cebpb knockdown (T0076), replicate 2


description: L3_W090: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppig knockdown (T0090), replicate 2


description: L3_W075: SPAR-seq of 108 multi-exon gene regions in N2A cells, Scaf11 knockdown (T0075), replicate 2


description: L3_W072: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ube2t knockdown (T0072), replicate 2


description: L3_W073: SPAR-seq of 108 multi-exon gene regions in N2A cells, Polr2d knockdown (T0073), replicate 2


description: L3_W069: SPAR-seq of 108 multi-exon gene regions in N2A cells, Bcas2 knockdown (T0069), replicate 2


description: L3_W082: SPAR-seq of 108 multi-exon gene regions in N2A cells, Atf3 knockdown (T0082), replicate 2


description: L3_W070: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbms3 knockdown (T0070), replicate 2


description: L3_W064: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cdyl knockdown (T0064), replicate 2


description: L3_W067: SPAR-seq of 108 multi-exon gene regions in N2A cells, Apc knockdown (T0067), replicate 2


description: L3_W086: SPAR-seq of 108 multi-exon gene regions in N2A cells, Parp3 knockdown (T0086), replicate 2


description: L3_W065: SPAR-seq of 108 multi-exon gene regions in N2A cells, Birc6 knockdown (T0065), replicate 2


description: L3_W080: SPAR-seq of 108 multi-exon gene regions in N2A cells, Baz1b knockdown (T0080), replicate 2


description: L3_W071: SPAR-seq of 108 multi-exon gene regions in N2A cells, Parp2 knockdown (T0071), replicate 2


description: L3_W063: SPAR-seq of 108 multi-exon gene regions in N2A cells, Brd7 knockdown (T0063), replicate 2


description: L3_W062: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp869 knockdown (T0062), replicate 2


description: L3_W059: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nup98 knockdown (T0059), replicate 2


description: L3_W074: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cd2ap knockdown (T0074), replicate 2


description: L3_W061: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ube2o knockdown (T0061), replicate 2


description: L3_W058: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nfrkb knockdown (T0058), replicate 2


description: L3_W055: SPAR-seq of 108 multi-exon gene regions in N2A cells, Aggf1 knockdown (T0055), replicate 2


description: L3_W056: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppp2r1b knockdown (T0056), replicate 2


description: L3_W060: SPAR-seq of 108 multi-exon gene regions in N2A cells, Setd8 knockdown (T0060), replicate 2


description: L3_W057: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0057), replicate 2


description: L3_W051: SPAR-seq of 108 multi-exon gene regions in N2A cells, Bclaf1 knockdown (T0051), replicate 2


description: L3_W053: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snrnp200 knockdown (T0053), replicate 2


description: L3_W054: SPAR-seq of 108 multi-exon gene regions in N2A cells, Parp1 knockdown (T0054), replicate 2


description: L3_W047: SPAR-seq of 108 multi-exon gene regions in N2A cells, Elmod3 knockdown (T0047), replicate 2


description: L3_W052: SPAR-seq of 108 multi-exon gene regions in N2A cells, Chd9 knockdown (T0052), replicate 2


description: L3_W050: SPAR-seq of 108 multi-exon gene regions in N2A cells, Brd8 knockdown (T0050), replicate 2


description: L3_W046: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ube2q1 knockdown (T0046), replicate 2


description: L3_W045: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0045), replicate 2


description: L3_W044: SPAR-seq of 108 multi-exon gene regions in N2A cells, Klf8 knockdown (T0044), replicate 2


description: L3_W043: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pds5b knockdown (T0043), replicate 2


description: L3_W068: SPAR-seq of 108 multi-exon gene regions in N2A cells, Foxn3 knockdown (T0068), replicate 2


description: L3_W048: SPAR-seq of 108 multi-exon gene regions in N2A cells, Atrx knockdown (T0048), replicate 2


description: L3_W039: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0039), replicate 2


description: L3_W040: SPAR-seq of 108 multi-exon gene regions in N2A cells, Brca1 knockdown (T0040), replicate 2


description: L3_W042: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prpf18 knockdown (T0042), replicate 2


description: L3_W049: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hdac4 knockdown (T0049), replicate 2


description: L3_W041: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbbp6 knockdown (T0041), replicate 2


description: L3_W037: SPAR-seq of 108 multi-exon gene regions in N2A cells, Atf6 knockdown (T0037), replicate 2


description: L3_W036: SPAR-seq of 108 multi-exon gene regions in N2A cells, Capn2 knockdown (T0036), replicate 2


description: L3_W038: SPAR-seq of 108 multi-exon gene regions in N2A cells, Gtf2f1 knockdown (T0038), replicate 2


description: L3_W033: SPAR-seq of 108 multi-exon gene regions in N2A cells, Blm knockdown (T0033), replicate 2


description: L3_W030: SPAR-seq of 108 multi-exon gene regions in N2A cells, Banp knockdown (T0030), replicate 2


description: L3_W066: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ranbp3 knockdown (T0066), replicate 2


description: L3_W032: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prpf40b knockdown (T0032), replicate 2


description: L3_W034: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppp1r8 knockdown (T0034), replicate 2


description: L3_W026: SPAR-seq of 108 multi-exon gene regions in N2A cells, Acin1 knockdown (T0026), replicate 2


description: L3_W031: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srsf11 knockdown (T0031), replicate 2


description: L3_W023: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snrnp40 knockdown (T0023), replicate 2


description: L3_W025: SPAR-seq of 108 multi-exon gene regions in N2A cells, Bub3 knockdown (T0025), replicate 2


description: L3_W018: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prdm2 knockdown (T0018), replicate 2


description: L3_W024: SPAR-seq of 108 multi-exon gene regions in N2A cells, Birc5 knockdown (T0024), replicate 2


description: L3_W015: SPAR-seq of 108 multi-exon gene regions in N2A cells, Brd4 knockdown (T0015), replicate 2


description: L3_W014: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ash1l knockdown (T0014), replicate 2


description: L3_W022: SPAR-seq of 108 multi-exon gene regions in N2A cells, Atf2 knockdown (T0022), replicate 2


description: L3_W028: SPAR-seq of 108 multi-exon gene regions in N2A cells, Arid1a knockdown (T0028), replicate 2


description: L3_W016: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cacna1e knockdown (T0016), replicate 2


description: L3_W029: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ehmt2 knockdown (T0029), replicate 2


description: L3_W017: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ints7 knockdown (T0017), replicate 2


description: L3_W010: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hjurp knockdown (T0010), replicate 2


description: L3_W021: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nacc1 knockdown (T0021), replicate 2


description: L3_W008: SPAR-seq of 108 multi-exon gene regions in N2A cells, Aire knockdown (T0008), replicate 2


description: L3_W013: SPAR-seq of 108 multi-exon gene regions in N2A cells, Brd3 knockdown (T0013), replicate 2


description: L3_W035: SPAR-seq of 108 multi-exon gene regions in N2A cells, Igf2bp2 knockdown (T0035), replicate 2


description: L3_W020: SPAR-seq of 108 multi-exon gene regions in N2A cells, Actl6b knockdown (T0020), replicate 2


description: L3_W006: SPAR-seq of 108 multi-exon gene regions in N2A cells, Arl6ip4 knockdown (T0006), replicate 2


description: L3_W004: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tfdp2 knockdown (T0004), replicate 2


description: L3_W009: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tonsl knockdown (T0009), replicate 2


description: L3_W007: SPAR-seq of 108 multi-exon gene regions in N2A cells, Atad2 knockdown (T0007), replicate 2


description: L3_W005: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prpf31 knockdown (T0005), replicate 2


description: L3_W019: SPAR-seq of 108 multi-exon gene regions in N2A cells, Arid3b knockdown (T0019), replicate 2


description: L3_W002: SPAR-seq of 108 multi-exon gene regions in N2A cells, Capn10 knockdown (T0002), replicate 2


description: L2_W766: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1534), replicate 1


description: L3_W011: SPAR-seq of 108 multi-exon gene regions in N2A cells, Akap8l knockdown (T0011), replicate 2


description: L2_W765: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1533), replicate 1


description: L3_W001: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0001), replicate 2


description: L3_W012: SPAR-seq of 108 multi-exon gene regions in N2A cells, Atf1 knockdown (T0012), replicate 2


description: L3_W003: SPAR-seq of 108 multi-exon gene regions in N2A cells, Spc25 knockdown (T0003), replicate 2


description: L2_W764: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ube2a knockdown (T1532), replicate 1


description: L2_W760: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp295 knockdown (T1528), replicate 1


description: L3_W027: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0027), replicate 2


description: L2_W768: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T1536), replicate 1


description: L2_W767: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1535), replicate 1


description: L2_W762: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp97 knockdown (T1530), replicate 1


description: L2_W755: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1523), replicate 1


description: L2_W751: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zc3h3 knockdown (T1519), replicate 1


description: L2_W759: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp617 knockdown (T1527), replicate 1


description: L2_W754: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1522), replicate 1


description: L2_W752: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zscan21 knockdown (T1520), replicate 1


description: L2_W756: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1524), replicate 1


description: L2_W758: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zbtb43 knockdown (T1526), replicate 1


description: L2_W761: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zscan12 knockdown (T1529), replicate 1


description: L2_W757: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zc3h8 knockdown (T1525), replicate 1


description: L2_W753: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbmxl2 knockdown (T1521), replicate 1


description: L2_W746: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ythdf3 knockdown (T1514), replicate 1


description: L2_W745: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp236 knockdown (T1513), replicate 1


description: L2_W748: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp282 knockdown (T1516), replicate 1


description: L2_W750: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp326 knockdown (T1518), replicate 1


description: L2_W737: SPAR-seq of 108 multi-exon gene regions in N2A cells, Wbp4 knockdown (T1505), replicate 1


description: L2_W763: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp553 knockdown (T1531), replicate 1


description: L2_W747: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp263 knockdown (T1515), replicate 1


description: L2_W744: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1512), replicate 1


description: L2_W741: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm44 knockdown (T1509), replicate 1


description: L2_W736: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp451 knockdown (T1504), replicate 1


description: L2_W743: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1511), replicate 1


description: L2_W733: SPAR-seq of 108 multi-exon gene regions in N2A cells, Unk knockdown (T1501), replicate 1


description: L2_W731: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1499), replicate 1


description: L2_W739: SPAR-seq of 108 multi-exon gene regions in N2A cells, Xab2 knockdown (T1507), replicate 1


description: L2_W742: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1510), replicate 1


description: L2_W738: SPAR-seq of 108 multi-exon gene regions in N2A cells, Parp12 knockdown (T1506), replicate 1


description: L2_W729: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T1497), replicate 1


description: L2_W727: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp180 knockdown (T1495), replicate 1


description: L2_W749: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp628 knockdown (T1517), replicate 1


description: L2_W730: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1498), replicate 1


description: L2_W734: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp57 knockdown (T1502), replicate 1


description: L2_W728: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp90 knockdown (T1496), replicate 1


description: L2_W725: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zzz3 knockdown (T1493), replicate 1


description: L2_W724: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp68 knockdown (T1492), replicate 1


description: L2_W726: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cxcl12 knockdown (T1494), replicate 1


description: L2_W735: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp9 knockdown (T1503), replicate 1


description: L2_W740: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp358 knockdown (T1508), replicate 1


description: L2_W723: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zc3hav1 knockdown (T1491), replicate 1


description: L2_W721: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp36l2 knockdown (T1489), replicate 1


description: L2_W719: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1487), replicate 1


description: L2_W718: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1486), replicate 1


description: L2_W722: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp36 knockdown (T1490), replicate 1


description: L2_W714: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp316 knockdown (T1482), replicate 1


description: L2_W716: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp62 knockdown (T1484), replicate 1


description: L2_W712: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp260 knockdown (T1480), replicate 1


description: L2_W710: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp207 knockdown (T1478), replicate 1


description: L2_W713: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp955a knockdown (T1481), replicate 1


description: L2_W732: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1500), replicate 1


description: L2_W708: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1476), replicate 1


description: L2_W715: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp277 knockdown (T1483), replicate 1


description: L2_W709: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp13 knockdown (T1477), replicate 1


description: L2_W711: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T1479), replicate 1


description: L2_W701: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp317 knockdown (T1469), replicate 1


description: L2_W707: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1475), replicate 1


description: L2_W704: SPAR-seq of 108 multi-exon gene regions in N2A cells, U2af2 knockdown (T1472), replicate 1


description: L2_W717: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T1485), replicate 1


description: L2_W702: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zcchc8 knockdown (T1470), replicate 1


description: L2_W705: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nova1 knockdown (T1473), replicate 1


description: L2_W699: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T1467), replicate 1


description: L2_W706: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1474), replicate 1


description: L2_W703: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfr knockdown (T1471), replicate 1


description: L2_W695: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1463), replicate 1


description: L2_W692: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zrsr2 knockdown (T1460), replicate 1


description: L2_W693: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mex3a knockdown (T1461), replicate 1


description: L2_W697: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ythdf2 knockdown (T1465), replicate 1


description: L2_W696: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1464), replicate 1


description: L2_W698: SPAR-seq of 108 multi-exon gene regions in N2A cells, Wtap knockdown (T1466), replicate 1


description: L2_W691: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp467 knockdown (T1459), replicate 1


description: L2_W700: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp239 knockdown (T1468), replicate 1


description: L2_W694: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1462), replicate 1


description: L2_W686: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ythdf1 knockdown (T1454), replicate 1


description: L2_W681: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zmym1 knockdown (T1449), replicate 1


description: L2_W682: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1450), replicate 1


description: L2_W680: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zbtb22 knockdown (T1448), replicate 1


description: L2_W690: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp330 knockdown (T1458), replicate 1


description: L2_W678: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp35 knockdown (T1446), replicate 1


description: L2_W684: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1452), replicate 1


description: L2_W687: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zc3h7a knockdown (T1455), replicate 1


description: L2_W688: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp385a knockdown (T1456), replicate 1


description: L2_W677: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zkscan3 knockdown (T1445), replicate 1


description: L2_W674: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp59 knockdown (T1442), replicate 1


description: L2_W676: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp319 knockdown (T1444), replicate 1


description: L2_W685: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp1 knockdown (T1453), replicate 1


description: L2_W689: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sf1 knockdown (T1457), replicate 1


description: L2_W672: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T1440), replicate 1


description: L2_W720: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1488), replicate 1


description: L2_W670: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tnrc6a knockdown (T1438), replicate 1


description: L2_W673: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T1441), replicate 1


description: L2_W668: SPAR-seq of 108 multi-exon gene regions in N2A cells, Alyref knockdown (T1436), replicate 1


description: L2_W671: SPAR-seq of 108 multi-exon gene regions in N2A cells, Stag1 knockdown (T1439), replicate 1


description: L2_W675: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp46 knockdown (T1443), replicate 1


description: L2_W667: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snrpe knockdown (T1435), replicate 1


description: L2_W666: SPAR-seq of 108 multi-exon gene regions in N2A cells, Thoc3 knockdown (T1434), replicate 1


description: L2_W669: SPAR-seq of 108 multi-exon gene regions in N2A cells, U2af1l4 knockdown (T1437), replicate 1


description: L2_W683: SPAR-seq of 108 multi-exon gene regions in N2A cells, untreated (T1451), replicate 1


description: L2_W664: SPAR-seq of 108 multi-exon gene regions in N2A cells, Stag2 knockdown (T1432), replicate 1


description: L2_W679: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ybx2 knockdown (T1447), replicate 1


description: L2_W659: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sugp1 knockdown (T1427), replicate 1


description: L2_W661: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tnks knockdown (T1429), replicate 1


description: L2_W656: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sugp2 knockdown (T1424), replicate 1


description: L2_W653: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srrm1 knockdown (T1421), replicate 1


description: L2_W655: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sox11 knockdown (T1423), replicate 1


description: L2_W660: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tmpo knockdown (T1428), replicate 1


description: L2_W657: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srsf9 knockdown (T1425), replicate 1


description: L2_W662: SPAR-seq of 108 multi-exon gene regions in N2A cells, Stag3 knockdown (T1430), replicate 1


description: L2_W654: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smc6 knockdown (T1422), replicate 1


description: L2_W652: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srsf6 knockdown (T1420), replicate 1


description: L2_W651: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snrpa knockdown (T1419), replicate 1


description: L2_W649: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smc2 knockdown (T1417), replicate 1


description: L2_W645: SPAR-seq of 108 multi-exon gene regions in N2A cells, Taf9 knockdown (T1413), replicate 1


description: L2_W644: SPAR-seq of 108 multi-exon gene regions in N2A cells, U2af1 knockdown (T1412), replicate 1


description: L2_W647: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sp6 knockdown (T1415), replicate 1


description: L2_W650: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rad54l2 knockdown (T1418), replicate 1


description: L2_W665: SPAR-seq of 108 multi-exon gene regions in N2A cells, Thap1 knockdown (T1433), replicate 1


description: L2_W648: SPAR-seq of 108 multi-exon gene regions in N2A cells, Scand1 knockdown (T1416), replicate 1


description: L2_W642: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kdm6a knockdown (T1410), replicate 1


description: L2_W646: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nhp2l1 knockdown (T1414), replicate 1


description: L2_W643: SPAR-seq of 108 multi-exon gene regions in N2A cells, Shprh knockdown (T1411), replicate 1


description: L2_W663: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tipin knockdown (T1431), replicate 1


description: L2_W639: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rsph1 knockdown (T1407), replicate 1


description: L2_W640: SPAR-seq of 108 multi-exon gene regions in N2A cells, Supt16h knockdown (T1408), replicate 1


description: L2_W641: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srsf1 knockdown (T1409), replicate 1


description: L2_W638: SPAR-seq of 108 multi-exon gene regions in N2A cells, Txnl4a knockdown (T1406), replicate 1


description: L2_W658: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snrpg knockdown (T1426), replicate 1


description: L2_W634: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snapc4 knockdown (T1402), replicate 1


description: L2_W637: SPAR-seq of 108 multi-exon gene regions in N2A cells, Vmn1r11 knockdown (T1405), replicate 1


description: L2_W635: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tra2b knockdown (T1403), replicate 1


description: L2_W632: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cenpk knockdown (T1400), replicate 1


description: L2_W636: SPAR-seq of 108 multi-exon gene regions in N2A cells, Usp39 knockdown (T1404), replicate 1


description: L2_W629: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sept8 knockdown (T1397), replicate 1


description: L2_W630: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sgol1 knockdown (T1398), replicate 1


description: L2_W631: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ssb knockdown (T1399), replicate 1


description: L2_W628: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sox13 knockdown (T1396), replicate 1


description: L2_W625: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snrpa1 knockdown (T1393), replicate 1


description: L2_W627: SPAR-seq of 108 multi-exon gene regions in N2A cells, Adad1 knockdown (T1395), replicate 1


description: L2_W626: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snrpd1 knockdown (T1394), replicate 1


description: L2_W622: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sf3a2 knockdown (T1390), replicate 1


description: L2_W623: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snrpb knockdown (T1391), replicate 1


description: L2_W617: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sf3b4 knockdown (T1385), replicate 1


description: L2_W618: SPAR-seq of 108 multi-exon gene regions in N2A cells, Clasrp knockdown (T1386), replicate 1


description: L2_W624: SPAR-seq of 108 multi-exon gene regions in N2A cells, Stau1 knockdown (T1392), replicate 1


description: L2_W619: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sin3b knockdown (T1387), replicate 1


description: L2_W616: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ttc14 knockdown (T1384), replicate 1


description: L2_W614: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sf3b1 knockdown (T1382), replicate 1


description: L2_W613: SPAR-seq of 108 multi-exon gene regions in N2A cells, Spag5 knockdown (T1381), replicate 1


description: L2_W610: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sirt3 knockdown (T1378), replicate 1


description: L2_W612: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smc5 knockdown (T1380), replicate 1


description: L2_W615: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T1383), replicate 1


description: L2_W607: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tspyl1 knockdown (T1375), replicate 1


description: L2_W606: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smu1 knockdown (T1374), replicate 1


description: L2_W604: SPAR-seq of 108 multi-exon gene regions in N2A cells, Thap7 knockdown (T1372), replicate 1


description: L2_W603: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T1371), replicate 1


description: L2_W605: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sirt6 knockdown (T1373), replicate 1


description: L2_W621: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T1389), replicate 1


description: L2_W596: SPAR-seq of 108 multi-exon gene regions in N2A cells, Stra13 knockdown (T1364), replicate 1


description: L2_W600: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eftud2 knockdown (T1368), replicate 1


description: L2_W620: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snrnp70 knockdown (T1388), replicate 1


description: L2_W633: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T1401), replicate 1


description: L2_W595: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sf3b2 knockdown (T1363), replicate 1


description: L2_W609: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srsf4 knockdown (T1377), replicate 1


description: L2_W594: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dynlt3 knockdown (T1362), replicate 1


description: L2_W602: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sept6 knockdown (T1370), replicate 1


description: L2_W598: SPAR-seq of 108 multi-exon gene regions in N2A cells, Celf3 knockdown (T1366), replicate 1


description: L2_W601: SPAR-seq of 108 multi-exon gene regions in N2A cells, Stau2 knockdown (T1369), replicate 1


description: L2_W590: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sycp3 knockdown (T1358), replicate 1


description: L2_W608: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srsf12 knockdown (T1376), replicate 1


description: L2_W599: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snrpb2 knockdown (T1367), replicate 1


description: L2_W586: SPAR-seq of 108 multi-exon gene regions in N2A cells, Slc11a1 knockdown (T1354), replicate 1


description: L2_W587: SPAR-seq of 108 multi-exon gene regions in N2A cells, Strbp knockdown (T1355), replicate 1


description: L2_W584: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snw1 knockdown (T1352), replicate 1


description: L2_W593: SPAR-seq of 108 multi-exon gene regions in N2A cells, Strap knockdown (T1361), replicate 1


description: L2_W583: SPAR-seq of 108 multi-exon gene regions in N2A cells, Taf8 knockdown (T1351), replicate 1


description: L2_W582: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sirt7 knockdown (T1350), replicate 1


description: L2_W592: SPAR-seq of 108 multi-exon gene regions in N2A cells, Thumpd1 knockdown (T1360), replicate 1


description: L2_W597: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tdrd3 knockdown (T1365), replicate 1


description: L2_W581: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snrpd3 knockdown (T1349), replicate 1


description: L2_W579: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tfip11 knockdown (T1347), replicate 1


description: L2_W591: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srsf5 knockdown (T1359), replicate 1


description: L2_W578: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tdrd1 knockdown (T1346), replicate 1


description: L2_W577: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T1345), replicate 1


description: L2_W585: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snrpc knockdown (T1353), replicate 1


description: L2_W575: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm4 knockdown (T1343), replicate 1


description: L2_W571: SPAR-seq of 108 multi-exon gene regions in N2A cells, Orc3 knockdown (T1339), replicate 1


description: L2_W589: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smyd5 knockdown (T1357), replicate 1


description: L2_W580: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smc1a knockdown (T1348), replicate 1


description: L2_W574: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sec13 knockdown (T1342), replicate 1


description: L2_W576: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T1344), replicate 1


description: L2_W588: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tdrd6 knockdown (T1356), replicate 1


description: L2_W564: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rp9 knockdown (T1332), replicate 1


description: L2_W568: SPAR-seq of 108 multi-exon gene regions in N2A cells, Orc2 knockdown (T1336), replicate 1


description: L2_W570: SPAR-seq of 108 multi-exon gene regions in N2A cells, Orc4 knockdown (T1338), replicate 1


description: L2_W563: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mex3d knockdown (T1331), replicate 1


description: L2_W566: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phf8 knockdown (T1334), replicate 1


description: L2_W562: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rps13 knockdown (T1330), replicate 1


description: L2_W567: SPAR-seq of 108 multi-exon gene regions in N2A cells, Polr2h knockdown (T1335), replicate 1


description: L2_W569: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm17 knockdown (T1337), replicate 1


description: L2_W557: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pole3 knockdown (T1325), replicate 1


description: L2_W561: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rcor2 knockdown (T1329), replicate 1


description: L2_W565: SPAR-seq of 108 multi-exon gene regions in N2A cells, Polr2k knockdown (T1333), replicate 1


description: L2_W560: SPAR-seq of 108 multi-exon gene regions in N2A cells, Repin1 knockdown (T1328), replicate 1


description: L2_W558: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phf15 knockdown (T1326), replicate 1


description: L2_W554: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prr3 knockdown (T1322), replicate 1


description: L2_W572: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phf5a knockdown (T1340), replicate 1


description: L2_W559: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pogk knockdown (T1327), replicate 1


description: L2_W556: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm7 knockdown (T1324), replicate 1


description: L2_W553: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ptbp2 knockdown (T1321), replicate 1


description: L2_W552: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pole4 knockdown (T1320), replicate 1


description: L2_W555: SPAR-seq of 108 multi-exon gene regions in N2A cells, Poldip3 knockdown (T1323), replicate 1


description: L2_W548: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbmxl1 knockdown (T1316), replicate 1


description: L2_W550: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rdm1 knockdown (T1318), replicate 1


description: L2_W547: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm10 knockdown (T1315), replicate 1


description: L2_W611: SPAR-seq of 108 multi-exon gene regions in N2A cells, Thap4 knockdown (T1379), replicate 1


description: L2_W546: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rpa1 knockdown (T1314), replicate 1


description: L2_W545: SPAR-seq of 108 multi-exon gene regions in N2A cells, Scaf8 knockdown (T1313), replicate 1


description: L2_W544: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sfmbt2 knockdown (T1312), replicate 1


description: L2_W543: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ptcd1 knockdown (T1311), replicate 1


description: L2_W540: SPAR-seq of 108 multi-exon gene regions in N2A cells, Papola knockdown (T1308), replicate 1


description: L2_W542: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pold2 knockdown (T1310), replicate 1


description: L2_W541: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pspc1 knockdown (T1309), replicate 1


description: L2_W539: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rps26 knockdown (T1307), replicate 1


description: L2_W551: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbmx knockdown (T1319), replicate 1


description: L2_W536: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pole2 knockdown (T1304), replicate 1


description: L2_W537: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T1305), replicate 1


description: L2_W533: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pola2 knockdown (T1301), replicate 1


description: L2_W528: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pdcd11 knockdown (T1296), replicate 1


description: L2_W538: SPAR-seq of 108 multi-exon gene regions in N2A cells, Polr1b knockdown (T1306), replicate 1


description: L2_W535: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pdcd7 knockdown (T1303), replicate 1


description: L2_W524: SPAR-seq of 108 multi-exon gene regions in N2A cells, Satb1 knockdown (T1292), replicate 1


description: L2_W534: SPAR-seq of 108 multi-exon gene regions in N2A cells, Psip1 knockdown (T1302), replicate 1


description: L2_W531: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rragc knockdown (T1299), replicate 1


description: L2_W526: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rnf41 knockdown (T1294), replicate 1


description: L2_W530: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mex3b knockdown (T1298), replicate 1


description: L2_W549: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppie knockdown (T1317), replicate 1


description: L2_W527: SPAR-seq of 108 multi-exon gene regions in N2A cells, Orc1 knockdown (T1295), replicate 1


description: L2_W523: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rnf2 knockdown (T1291), replicate 1


description: L2_W519: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T1287), replicate 1


description: L2_W518: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm28 knockdown (T1286), replicate 1


description: L2_W517: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rcor3 knockdown (T1285), replicate 1


description: L2_W516: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rnf138 knockdown (T1284), replicate 1


description: L2_W515: SPAR-seq of 108 multi-exon gene regions in N2A cells, Polr2j knockdown (T1283), replicate 1


description: L2_W532: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rrs1 knockdown (T1300), replicate 1


description: L2_W512: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbpms knockdown (T1280), replicate 1


description: L2_W513: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppih knockdown (T1281), replicate 1


description: L2_W514: SPAR-seq of 108 multi-exon gene regions in N2A cells, Raly knockdown (T1282), replicate 1


description: L2_W529: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pmf1 knockdown (T1297), replicate 1


description: L2_W520: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm8a knockdown (T1288), replicate 1


description: L2_W525: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T1293), replicate 1


description: L2_W511: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prpf39 knockdown (T1279), replicate 1


description: L2_W506: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pum2 knockdown (T1274), replicate 1


description: L2_W509: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rnps1 knockdown (T1277), replicate 1


description: L2_W510: SPAR-seq of 108 multi-exon gene regions in N2A cells, Polr2c knockdown (T1278), replicate 1


description: L2_W505: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rpp25 knockdown (T1273), replicate 1


description: L2_W504: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pum1 knockdown (T1272), replicate 1


description: L2_W502: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppil2 knockdown (T1270), replicate 1


description: L2_W497: SPAR-seq of 108 multi-exon gene regions in N2A cells, Orc5 knockdown (T1265), replicate 1


description: L2_W503: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm14 knockdown (T1271), replicate 1


description: L2_W499: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm38 knockdown (T1267), replicate 1


description: L2_W507: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T1275), replicate 1


description: L2_W501: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rufy2 knockdown (T1269), replicate 1


description: L2_W521: SPAR-seq of 108 multi-exon gene regions in N2A cells, Scrt1 knockdown (T1289), replicate 1


description: L2_W573: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rod1 knockdown (T1341), replicate 1


description: L2_W496: SPAR-seq of 108 multi-exon gene regions in N2A cells, Purb knockdown (T1264), replicate 1


description: L2_W494: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppil4 knockdown (T1262), replicate 1


description: L2_W492: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pnpt1 knockdown (T1260), replicate 1


description: L2_W495: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm18 knockdown (T1263), replicate 1


description: L2_W491: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppil3 knockdown (T1259), replicate 1


description: L2_W490: SPAR-seq of 108 multi-exon gene regions in N2A cells, Qk knockdown (T1258), replicate 1


description: L2_W508: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rdbp knockdown (T1276), replicate 1


description: L2_W500: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prpf19 knockdown (T1268), replicate 1


description: L2_W498: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rex2 knockdown (T1266), replicate 1


description: L2_W488: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prpf3 knockdown (T1256), replicate 1


description: L2_W487: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pogz knockdown (T1255), replicate 1


description: L2_W486: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rlim knockdown (T1254), replicate 1


description: L2_W476: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ing5 knockdown (T1244), replicate 1


description: L2_W477: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pabpc5 knockdown (T1245), replicate 1


description: L2_W483: SPAR-seq of 108 multi-exon gene regions in N2A cells, Chmp1a knockdown (T1251), replicate 1


description: L2_W484: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rpa2 knockdown (T1252), replicate 1


description: L2_W482: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm39 knockdown (T1250), replicate 1


description: L2_W474: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eif2d knockdown (T1242), replicate 1


description: L2_W471: SPAR-seq of 108 multi-exon gene regions in N2A cells, Lsm11 knockdown (T1239), replicate 1


description: L2_W479: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phf13 knockdown (T1247), replicate 1


description: L2_W480: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T1248), replicate 1


description: L2_W472: SPAR-seq of 108 multi-exon gene regions in N2A cells, Myef2 knockdown (T1240), replicate 1


description: L2_W473: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mov10l1 knockdown (T1241), replicate 1


description: L2_W469: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ncbp2 knockdown (T1237), replicate 1


description: L2_W470: SPAR-seq of 108 multi-exon gene regions in N2A cells, Morf4l1 knockdown (T1238), replicate 1


description: L2_W478: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kdm5c knockdown (T1246), replicate 1


description: L2_W493: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sart3 knockdown (T1261), replicate 1


description: L2_W475: SPAR-seq of 108 multi-exon gene regions in N2A cells, Myst2 knockdown (T1243), replicate 1


description: L2_W467: SPAR-seq of 108 multi-exon gene regions in N2A cells, Lsm3 knockdown (T1235), replicate 1


description: L2_W466: SPAR-seq of 108 multi-exon gene regions in N2A cells, Lsm4 knockdown (T1234), replicate 1


description: L2_W489: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm3 knockdown (T1257), replicate 1


description: L2_W465: SPAR-seq of 108 multi-exon gene regions in N2A cells, Jdp2 knockdown (T1233), replicate 1


description: L2_W464: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nup155 knockdown (T1232), replicate 1


description: L2_W485: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbfox2 knockdown (T1253), replicate 1


description: L2_W468: SPAR-seq of 108 multi-exon gene regions in N2A cells, Npm3 knockdown (T1236), replicate 1


description: L2_W462: SPAR-seq of 108 multi-exon gene regions in N2A cells, Trmt2a knockdown (T1230), replicate 1


description: L2_W463: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pcbp1 knockdown (T1231), replicate 1


description: L2_W481: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T1249), replicate 1


description: L2_W460: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp870 knockdown (T1228), replicate 1


description: L2_W461: SPAR-seq of 108 multi-exon gene regions in N2A cells, Msi2 knockdown (T1229), replicate 1


description: L2_W459: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nap1l5 knockdown (T1227), replicate 1


description: L2_W458: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mkrn1 knockdown (T1226), replicate 1


description: L2_W456: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pcbp3 knockdown (T1224), replicate 1


description: L2_W455: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nxf2 knockdown (T1223), replicate 1


description: L2_W457: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp637 knockdown (T1225), replicate 1


description: L2_W454: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nup107 knockdown (T1222), replicate 1


description: L2_W452: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kdm4b knockdown (T1220), replicate 1


description: L2_W449: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phax knockdown (T1217), replicate 1


description: L2_W450: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nxf1 knockdown (T1218), replicate 1


description: L2_W451: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mettl3 knockdown (T1219), replicate 1


description: L2_W444: SPAR-seq of 108 multi-exon gene regions in N2A cells, Msi1 knockdown (T1212), replicate 1


description: L2_W453: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mxd3 knockdown (T1221), replicate 1


description: L2_W446: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dpf1 knockdown (T1214), replicate 1


description: L2_W447: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nup160 knockdown (T1215), replicate 1


description: L2_W443: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kdm3b knockdown (T1211), replicate 1


description: L2_W441: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T1209), replicate 1


description: L2_W445: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nol6 knockdown (T1213), replicate 1


description: L2_W448: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prmt8 knockdown (T1216), replicate 1


description: L2_W440: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mynn knockdown (T1208), replicate 1


description: L2_W438: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phf12 knockdown (T1206), replicate 1


description: L2_W437: SPAR-seq of 108 multi-exon gene regions in N2A cells, Khdrbs2 knockdown (T1205), replicate 1


description: L2_W439: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nelf knockdown (T1207), replicate 1


description: L2_W435: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kdm4c knockdown (T1203), replicate 1


description: L2_W434: SPAR-seq of 108 multi-exon gene regions in N2A cells, Lsm2 knockdown (T1202), replicate 1


description: L2_W436: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nsfl1c knockdown (T1204), replicate 1


description: L2_W433: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kdm4a knockdown (T1201), replicate 1


description: L2_W432: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1 knockdown (T1200), replicate 1


description: L2_W430: SPAR-seq of 108 multi-exon gene regions in N2A cells, Myst1 knockdown (T1198), replicate 1


description: L2_W431: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nup133 knockdown (T1199), replicate 1


description: L2_W442: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl2 knockdown (T1210), replicate 1


description: L2_W425: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pabpc1 knockdown (T1193), replicate 1


description: L2_W427: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mov10 knockdown (T1195), replicate 1


description: L2_W424: SPAR-seq of 108 multi-exon gene regions in N2A cells, Luc7l2 knockdown (T1192), replicate 1


description: L2_W423: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T1191), replicate 1


description: L2_W429: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T1197), replicate 1


description: L2_W422: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mkrn3 knockdown (T1190), replicate 1


description: L2_W420: SPAR-seq of 108 multi-exon gene regions in N2A cells, Parn knockdown (T1188), replicate 1


description: L2_W419: SPAR-seq of 108 multi-exon gene regions in N2A cells, Msl3 knockdown (T1187), replicate 1


description: L2_W414: SPAR-seq of 108 multi-exon gene regions in N2A cells, Lin28a knockdown (T1182), replicate 1


description: L2_W418: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nufip1 knockdown (T1186), replicate 1


description: L2_W416: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mkrn2 knockdown (T1184), replicate 1


description: L2_W415: SPAR-seq of 108 multi-exon gene regions in N2A cells, Luc7l knockdown (T1183), replicate 1


description: L2_W421: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nono knockdown (T1189), replicate 1


description: L2_W413: SPAR-seq of 108 multi-exon gene regions in N2A cells, Morf4l2 knockdown (T1181), replicate 1


description: L2_W417: SPAR-seq of 108 multi-exon gene regions in N2A cells, Lsm7 knockdown (T1185), replicate 1


description: L2_W412: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mus81 knockdown (T1180), replicate 1


description: L2_W409: SPAR-seq of 108 multi-exon gene regions in N2A cells, Magoh knockdown (T1177), replicate 1


description: L2_W411: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T1179), replicate 1


description: L2_W408: SPAR-seq of 108 multi-exon gene regions in N2A cells, Myst4 knockdown (T1176), replicate 1


description: L2_W406: SPAR-seq of 108 multi-exon gene regions in N2A cells, Neurog2 knockdown (T1174), replicate 1


description: L2_W407: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nup88 knockdown (T1175), replicate 1


description: L2_W426: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mphosph10 knockdown (T1194), replicate 1


description: L2_W405: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nap1l1 knockdown (T1173), replicate 1


description: L2_W428: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nupl2 knockdown (T1196), replicate 1


description: L2_W404: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mfap1a knockdown (T1172), replicate 1


description: L2_W403: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mga knockdown (T1171), replicate 1


description: L2_W401: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pabpc4 knockdown (T1169), replicate 1


description: L2_W410: SPAR-seq of 108 multi-exon gene regions in N2A cells, Lsm10 knockdown (T1178), replicate 1


description: L2_W398: SPAR-seq of 108 multi-exon gene regions in N2A cells, Naa38 knockdown (T1166), replicate 1


description: L2_W396: SPAR-seq of 108 multi-exon gene regions in N2A cells, Khdrbs3 knockdown (T1164), replicate 1


description: L2_W399: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mcm8 knockdown (T1167), replicate 1


description: L2_W397: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfml knockdown (T1165), replicate 1


description: L2_W393: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nup37 knockdown (T1161), replicate 1


description: L2_W390: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ncl knockdown (T1158), replicate 1


description: L2_W391: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hmgn5 knockdown (T1159), replicate 1


description: L2_W395: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl3 knockdown (T1163), replicate 1


description: L2_W394: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nxf7 knockdown (T1162), replicate 1


description: L2_W389: SPAR-seq of 108 multi-exon gene regions in N2A cells, Klhdc3 knockdown (T1157), replicate 1


description: L2_W387: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nap1l4 knockdown (T1155), replicate 1


description: L2_W392: SPAR-seq of 108 multi-exon gene regions in N2A cells, Lsm5 knockdown (T1160), replicate 1


description: L2_W388: SPAR-seq of 108 multi-exon gene regions in N2A cells, L3mbtl3 knockdown (T1156), replicate 1


description: L2_W385: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T1153), replicate 1


description: L2_W402: SPAR-seq of 108 multi-exon gene regions in N2A cells, L3mbtl2 knockdown (T1170), replicate 1


description: L2_W383: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hnrnpd knockdown (T1151), replicate 1


description: L2_W386: SPAR-seq of 108 multi-exon gene regions in N2A cells, Parg knockdown (T1154), replicate 1


description: L2_W381: SPAR-seq of 108 multi-exon gene regions in N2A cells, Exosc4 knockdown (T1149), replicate 1


description: L2_W382: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ep400 knockdown (T1150), replicate 1


description: L2_W384: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T1152), replicate 1


description: L2_W380: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prmt3 knockdown (T1148), replicate 1


description: L2_W400: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phf10 knockdown (T1168), replicate 1


description: L2_W376: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eif2s2 knockdown (T1144), replicate 1


description: L2_W374: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hnrnpr knockdown (T1142), replicate 1


description: L2_W375: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dido1 knockdown (T1143), replicate 1


description: L2_W373: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dhx38 knockdown (T1141), replicate 1


description: L2_W377: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dync1li1 knockdown (T1145), replicate 1


description: L2_W379: SPAR-seq of 108 multi-exon gene regions in N2A cells, Fer knockdown (T1147), replicate 1


description: L2_W522: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phf17 knockdown (T1290), replicate 1


description: L2_W370: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dnmt3l knockdown (T1138), replicate 1


description: L2_W378: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ino80b knockdown (T1146), replicate 1


description: L2_W367: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hnrpdl knockdown (T1135), replicate 1


description: L2_W369: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hnrnph1 knockdown (T1137), replicate 1


description: L2_W366: SPAR-seq of 108 multi-exon gene regions in N2A cells, Gemin4 knockdown (T1134), replicate 1


description: L2_W365: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dppa5a knockdown (T1133), replicate 1


description: L2_W362: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hnrnpa1 knockdown (T1130), replicate 1


description: L2_W364: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eif2c4 knockdown (T1132), replicate 1


description: L2_W361: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hnrnpm knockdown (T1129), replicate 1


description: L2_W357: SPAR-seq of 108 multi-exon gene regions in N2A cells, Drosha knockdown (T1125), replicate 1


description: L2_W356: SPAR-seq of 108 multi-exon gene regions in N2A cells, G3bp2 knockdown (T1124), replicate 1


description: L2_W363: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hira knockdown (T1131), replicate 1


description: L2_W358: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eif2c3 knockdown (T1126), replicate 1


description: L2_W359: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dnd1 knockdown (T1127), replicate 1


description: L2_W354: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hras1 knockdown (T1122), replicate 1


description: L2_W353: SPAR-seq of 108 multi-exon gene regions in N2A cells, Epb4.1l4a knockdown (T1121), replicate 1


description: L2_W351: SPAR-seq of 108 multi-exon gene regions in N2A cells, Gtl3 knockdown (T1119), replicate 1


description: L2_W352: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ehmt1 knockdown (T1120), replicate 1


description: L2_W372: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hdgfrp3 knockdown (T1140), replicate 1


description: L2_W371: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hells knockdown (T1139), replicate 1


description: L2_W350: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dgcr14 knockdown (T1118), replicate 1


description: L2_W368: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hist1h2bc knockdown (T1136), replicate 1


description: L2_W348: SPAR-seq of 108 multi-exon gene regions in N2A cells, Syf2 knockdown (T1116), replicate 1


description: L2_W347: SPAR-seq of 108 multi-exon gene regions in N2A cells, Frg1 knockdown (T1115), replicate 1


description: L2_W341: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eif2c2 knockdown (T1109), replicate 1


description: L2_W344: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dhx9 knockdown (T1112), replicate 1


description: L2_W342: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cenpt knockdown (T1110), replicate 1


description: L2_W360: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dhx30 knockdown (T1128), replicate 1


description: L2_W349: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hdgfrp2 knockdown (T1117), replicate 1


description: L2_W339: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dhx35 knockdown (T1107), replicate 1


description: L2_W346: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hnrnpc knockdown (T1114), replicate 1


description: L2_W343: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hnrnpu knockdown (T1111), replicate 1


description: L2_W355: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cenpi knockdown (T1123), replicate 1


description: L2_W337: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hnrnpab knockdown (T1105), replicate 1


description: L2_W338: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dmap1 knockdown (T1106), replicate 1


description: L2_W345: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T1113), replicate 1


description: L2_W334: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tspyl2 knockdown (T1102), replicate 1


description: L2_W333: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T1101), replicate 1


description: L2_W330: SPAR-seq of 108 multi-exon gene regions in N2A cells, Thoc5 knockdown (T1098), replicate 1


description: L2_W336: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rcan2 knockdown (T1104), replicate 1


description: L2_W340: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dhx8 knockdown (T1108), replicate 1


description: L2_W329: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hmg20b knockdown (T1097), replicate 1


description: L2_W331: SPAR-seq of 108 multi-exon gene regions in N2A cells, Gpatch1 knockdown (T1099), replicate 1


description: L2_W327: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T1095), replicate 1


description: L2_W332: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zc3h12d knockdown (T1100), replicate 1


description: L2_W326: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hnrnpl knockdown (T1094), replicate 1


description: L2_W325: SPAR-seq of 108 multi-exon gene regions in N2A cells, H3f3a knockdown (T1093), replicate 1


description: L2_W324: SPAR-seq of 108 multi-exon gene regions in N2A cells, Gemin6 knockdown (T1092), replicate 1


description: L2_W322: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eif4a1 knockdown (T1090), replicate 1


description: L2_W320: SPAR-seq of 108 multi-exon gene regions in N2A cells, Exosc3 knockdown (T1088), replicate 1


description: L2_W321: SPAR-seq of 108 multi-exon gene regions in N2A cells, Thumpd3 knockdown (T1089), replicate 1


description: L2_W318: SPAR-seq of 108 multi-exon gene regions in N2A cells, Gtf3a knockdown (T1086), replicate 1


description: L2_W319: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prpf40a knockdown (T1087), replicate 1


description: L2_W317: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp771 knockdown (T1085), replicate 1


description: L2_W315: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T1083), replicate 1


description: L2_W316: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hnrnpa2b1 knockdown (T1084), replicate 1


description: L2_W309: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eif2s1 knockdown (T1077), replicate 1


description: L2_W313: SPAR-seq of 108 multi-exon gene regions in N2A cells, Gemin5 knockdown (T1081), replicate 1


description: L2_W311: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hnrnph2 knockdown (T1079), replicate 1


description: L2_W312: SPAR-seq of 108 multi-exon gene regions in N2A cells, Larp7 knockdown (T1080), replicate 1


description: L2_W335: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eif4b knockdown (T1103), replicate 1


description: L2_W306: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dazap1 knockdown (T1074), replicate 1


description: L2_W305: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dnajc8 knockdown (T1073), replicate 1


description: L2_W323: SPAR-seq of 108 multi-exon gene regions in N2A cells, Incenp knockdown (T1091), replicate 1


description: L2_W308: SPAR-seq of 108 multi-exon gene regions in N2A cells, Flywch1 knockdown (T1076), replicate 1


description: L2_W300: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hemt1 knockdown (T1068), replicate 1


description: L2_W304: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dgcr8 knockdown (T1072), replicate 1


description: L2_W307: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tra2a knockdown (T1075), replicate 1


description: L2_W297: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dhx15 knockdown (T1065), replicate 1


description: L2_W298: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dicer1 knockdown (T1066), replicate 1


description: L2_W301: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hmgb2 knockdown (T1069), replicate 1


description: L2_W303: SPAR-seq of 108 multi-exon gene regions in N2A cells, Exosc5 knockdown (T1071), replicate 1


description: L2_W296: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hmgb1 knockdown (T1064), replicate 1


description: L2_W328: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hp1bp3 knockdown (T1096), replicate 1


description: L2_W314: SPAR-seq of 108 multi-exon gene regions in N2A cells, H1fx knockdown (T1082), replicate 1


description: L2_W299: SPAR-seq of 108 multi-exon gene regions in N2A cells, Gemin7 knockdown (T1067), replicate 1


description: L2_W291: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hist3h2ba knockdown (T1059), replicate 1


description: L2_W292: SPAR-seq of 108 multi-exon gene regions in N2A cells, Grwd1 knockdown (T1060), replicate 1


description: L2_W294: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kat2a knockdown (T1062), replicate 1


description: L2_W295: SPAR-seq of 108 multi-exon gene regions in N2A cells, Esrrb knockdown (T1063), replicate 1


description: L2_W293: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dazl knockdown (T1061), replicate 1


description: L2_W310: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hbp1 knockdown (T1078), replicate 1


description: L2_W286: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp473 knockdown (T1054), replicate 1


description: L2_W288: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T1056), replicate 1


description: L2_W285: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cpne1 knockdown (T1053), replicate 1


description: L2_W289: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T1057), replicate 1


description: L2_W290: SPAR-seq of 108 multi-exon gene regions in N2A cells, Leng9 knockdown (T1058), replicate 1


description: L2_W283: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp828 knockdown (T1051), replicate 1


description: L2_W281: SPAR-seq of 108 multi-exon gene regions in N2A cells, Celf4 knockdown (T1049), replicate 1


description: L2_W284: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbd6 knockdown (T1052), replicate 1


description: L2_W279: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smc3 knockdown (T1047), replicate 1


description: L2_W280: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cherp knockdown (T1048), replicate 1


description: L2_W278: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cstf2t knockdown (T1046), replicate 1


description: L2_W277: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cpeb4 knockdown (T1045), replicate 1


description: L2_W276: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rif1 knockdown (T1044), replicate 1


description: L2_W275: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cxxc1 knockdown (T1043), replicate 1


description: L2_W302: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mms22l knockdown (T1070), replicate 1


description: L2_W287: SPAR-seq of 108 multi-exon gene regions in N2A cells, Crnkl1 knockdown (T1055), replicate 1


description: L2_W272: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cdca8 knockdown (T1040), replicate 1


description: L2_W271: SPAR-seq of 108 multi-exon gene regions in N2A cells, Parp8 knockdown (T1039), replicate 1


description: L2_W274: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cpeb1 knockdown (T1042), replicate 1


description: L2_W273: SPAR-seq of 108 multi-exon gene regions in N2A cells, Capn7 knockdown (T1041), replicate 1


description: L2_W282: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cpped1 knockdown (T1050), replicate 1


description: L2_W268: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cpsf3 knockdown (T1036), replicate 1


description: L2_W269: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ddx5 knockdown (T1037), replicate 1


description: L2_W265: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rcor1 knockdown (T1033), replicate 1


description: L2_W266: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cpeb2 knockdown (T1034), replicate 1


description: L2_W263: SPAR-seq of 108 multi-exon gene regions in N2A cells, C1qbp knockdown (T1031), replicate 1


description: L2_W270: SPAR-seq of 108 multi-exon gene regions in N2A cells, Utp3 knockdown (T1038), replicate 1


description: L2_W267: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nudt21 knockdown (T1035), replicate 1


description: L2_W261: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ddx46 knockdown (T1029), replicate 1


description: L2_W260: SPAR-seq of 108 multi-exon gene regions in N2A cells, Enox1 knockdown (T1028), replicate 1


description: L2_W264: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zcchc10 knockdown (T1032), replicate 1


description: L2_W258: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ccar1 knockdown (T1026), replicate 1


description: L2_W262: SPAR-seq of 108 multi-exon gene regions in N2A cells, Carm1 knockdown (T1030), replicate 1


description: L2_W253: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mysm1 knockdown (T1021), replicate 1


description: L2_W254: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ddx50 knockdown (T1022), replicate 1


description: L2_W255: SPAR-seq of 108 multi-exon gene regions in N2A cells, Clns1a knockdown (T1023), replicate 1


description: L2_W256: SPAR-seq of 108 multi-exon gene regions in N2A cells, Macrod1 knockdown (T1024), replicate 1


description: L2_W259: SPAR-seq of 108 multi-exon gene regions in N2A cells, Samd4b knockdown (T1027), replicate 1


description: L2_W251: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ddx39 knockdown (T1019), replicate 1


description: L2_W257: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cbx7 knockdown (T1025), replicate 1


description: L2_W248: SPAR-seq of 108 multi-exon gene regions in N2A cells, Bicc1 knockdown (T1016), replicate 1


description: L2_W252: SPAR-seq of 108 multi-exon gene regions in N2A cells, Wdhd1 knockdown (T1020), replicate 1


description: L2_W250: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eif4a3 knockdown (T1018), replicate 1


description: L2_W249: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T1017), replicate 1


description: L2_W243: SPAR-seq of 108 multi-exon gene regions in N2A cells, D4Wsu53e knockdown (T1011), replicate 1


description: L2_W244: SPAR-seq of 108 multi-exon gene regions in N2A cells, Slu7 knockdown (T1012), replicate 1


description: L2_W247: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cbx2 knockdown (T1015), replicate 1


description: L2_W245: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cpsf2 knockdown (T1013), replicate 1


description: L2_W246: SPAR-seq of 108 multi-exon gene regions in N2A cells, Setd3 knockdown (T1014), replicate 1


description: L2_W242: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cdyl2 knockdown (T1010), replicate 1


description: L2_W241: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mis18bp1 knockdown (T1009), replicate 1


description: L2_W239: SPAR-seq of 108 multi-exon gene regions in N2A cells, Slx4 knockdown (T1007), replicate 1


description: L2_W236: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cdk2 knockdown (T1004), replicate 1


description: L2_W237: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T1005), replicate 1


description: L2_W240: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cstf1 knockdown (T1008), replicate 1


description: L2_W238: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp12 knockdown (T1006), replicate 1


description: L2_W235: SPAR-seq of 108 multi-exon gene regions in N2A cells, Brms1l knockdown (T1003), replicate 1


description: L2_W230: SPAR-seq of 108 multi-exon gene regions in N2A cells, Capn5 knockdown (T0998), replicate 1


description: L2_W232: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mthfsd knockdown (T1000), replicate 1


description: L2_W233: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sf3b3 knockdown (T1001), replicate 1


description: L2_W231: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0999), replicate 1


description: L2_W229: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ccnl2 knockdown (T0997), replicate 1


description: L2_W228: SPAR-seq of 108 multi-exon gene regions in N2A cells, Enox2 knockdown (T0996), replicate 1


description: L2_W225: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ddx3x knockdown (T0993), replicate 1


description: L2_W226: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zbtb24 knockdown (T0994), replicate 1


description: L2_W223: SPAR-seq of 108 multi-exon gene regions in N2A cells, Clk1 knockdown (T0991), replicate 1


description: L2_W219: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0987), replicate 1


description: L2_W221: SPAR-seq of 108 multi-exon gene regions in N2A cells, D2Ertd750e knockdown (T0989), replicate 1


description: L2_W218: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phf21a knockdown (T0986), replicate 1


description: L2_W222: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zbtb46 knockdown (T0990), replicate 1


description: L2_W224: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm41 knockdown (T0992), replicate 1


description: L2_W217: SPAR-seq of 108 multi-exon gene regions in N2A cells, Deb1 knockdown (T0985), replicate 1


description: L2_W213: SPAR-seq of 108 multi-exon gene regions in N2A cells, Trmt1 knockdown (T0981), replicate 1


description: L2_W215: SPAR-seq of 108 multi-exon gene regions in N2A cells, Bud13 knockdown (T0983), replicate 1


description: L2_W214: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cpeb3 knockdown (T0982), replicate 1


description: L2_W234: SPAR-seq of 108 multi-exon gene regions in N2A cells, Casc3 knockdown (T1002), replicate 1


description: L2_W211: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ddx1 knockdown (T0979), replicate 1


description: L2_W212: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cic knockdown (T0980), replicate 1


description: L2_W216: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zwint knockdown (T0984), replicate 1


description: L2_W210: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm34 knockdown (T0978), replicate 1


description: L2_W206: SPAR-seq of 108 multi-exon gene regions in N2A cells, Csn3 knockdown (T0974), replicate 1


description: L2_W203: SPAR-seq of 108 multi-exon gene regions in N2A cells, Txnl4b knockdown (T0971), replicate 1


description: L2_W208: SPAR-seq of 108 multi-exon gene regions in N2A cells, Chd3 knockdown (T0976), replicate 1


description: L2_W227: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cpsf1 knockdown (T0995), replicate 1


description: L2_W220: SPAR-seq of 108 multi-exon gene regions in N2A cells, D19Bwg1357e knockdown (T0988), replicate 1


description: L2_W202: SPAR-seq of 108 multi-exon gene regions in N2A cells, Carhsp1 knockdown (T0970), replicate 1


description: L2_W198: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cstf2 knockdown (T0966), replicate 1


description: L2_W199: SPAR-seq of 108 multi-exon gene regions in N2A cells, D1Pas1 knockdown (T0967), replicate 1


description: L2_W204: SPAR-seq of 108 multi-exon gene regions in N2A cells, Camk4 knockdown (T0972), replicate 1


description: L2_W200: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zbtb40 knockdown (T0968), replicate 1


description: L2_W201: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp768 knockdown (T0969), replicate 1


description: L2_W197: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ddx19a knockdown (T0965), replicate 1


description: L2_W205: SPAR-seq of 108 multi-exon gene regions in N2A cells, Chd1l knockdown (T0973), replicate 1


description: L2_W194: SPAR-seq of 108 multi-exon gene regions in N2A cells, Lemd2 knockdown (T0962), replicate 1


description: L2_W207: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cpsf4l knockdown (T0975), replicate 1


description: L2_W192: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0960), replicate 1


description: L2_W191: SPAR-seq of 108 multi-exon gene regions in N2A cells, Baz2a knockdown (T0959), replicate 1


description: L2_W195: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ddx41 knockdown (T0963), replicate 1


description: L2_W209: SPAR-seq of 108 multi-exon gene regions in N2A cells, Boll knockdown (T0977), replicate 1


description: L2_W196: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cpsf4 knockdown (T0964), replicate 1


description: L2_W186: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zbtb38 knockdown (T0954), replicate 1


description: L2_W182: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hmgxb3 knockdown (T0950), replicate 1


description: L2_W179: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zgpat knockdown (T0947), replicate 1


description: L2_W181: SPAR-seq of 108 multi-exon gene regions in N2A cells, Adar knockdown (T0949), replicate 1


description: L2_W193: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0961), replicate 1


description: L2_W188: SPAR-seq of 108 multi-exon gene regions in N2A cells, Setd1a knockdown (T0956), replicate 1


description: L2_W189: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp459 knockdown (T0957), replicate 1


description: L2_W171: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tbl1xr1 knockdown (T0939), replicate 1


description: L2_W178: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prmt6 knockdown (T0946), replicate 1


description: L2_W175: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zc3h12a knockdown (T0943), replicate 1


description: L2_W183: SPAR-seq of 108 multi-exon gene regions in N2A cells, Arglu1 knockdown (T0951), replicate 1


description: L2_W172: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srrt knockdown (T0940), replicate 1


description: L2_W184: SPAR-seq of 108 multi-exon gene regions in N2A cells, Setd1b knockdown (T0952), replicate 1


description: L2_W167: SPAR-seq of 108 multi-exon gene regions in N2A cells, 5930416I19Rik knockdown (T0935), replicate 1


description: L2_W176: SPAR-seq of 108 multi-exon gene regions in N2A cells, Raver2 knockdown (T0944), replicate 1


description: L2_W174: SPAR-seq of 108 multi-exon gene regions in N2A cells, Samd14 knockdown (T0942), replicate 1