title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB094IRF)

description:
https://www.encodeproject.org/experiments/ENCSR829ZLX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR829ZLX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR239ZVK
encode release date: 2022-07-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB094IRF

source_name: Homo sapiens male adult (33 years) naive thymus-derived CD8-positive, alpha-beta T primary cell

value: 33 year

value: ENCBS538USD at ENCODE; https://www.encodeproject.org/ENCBS538USD/

value: Derived from ENCODE donor ENCDO830ROH; https://www.encodeproject.org/ENCDO830ROH/


title: Mint-ChIP-seq from activated naive CD8-positive, alpha-beta T cell (ENCLB372AHG)

status: Public on Jul 22 2022

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR626ZPK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR626ZPK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR803FCO
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB372AHG

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens male adult (30 years) activated CD8-positive, naive alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads

tag: antibody

value: primary cell

tag: biosample encode accession

tag: Sex

value: male

tag: dev stage

value: adult

tag: age

value: 30 year

tag: lab

value: Yijun Ruan, JAX

tag: source

value: AllCells

tag: treatments

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

tag: link

value: ENCBS777LNY at ENCODE; https://www.encodeproject.org/ENCBS777LNY/

value: Derived from ENCODE donor ENCDO166AGR; https://www.encodeproject.org/ENCDO166AGR/


type: RNA

city: Juelich

first: Tino

last: Polen

state: NRW

address: Wilhelm-Johnen-Str 1

department: IBG-1: Biotechnology

country: Germany

institute: Forschungszentrum Jülich GmbH

description:
WT (5 mM 4-hydroxybenzoic acid, 30 min) vs. WT-rep2
Biological replicate 2 of 2
original platform:
GPL22561

hyb_protocol: Gene expression changes were compared using self-made PCR-product based DNA microarrays (Lange et al. 2003), custom-made DNA microarrays with 70-mer oligonucleotides obtained from Operon Biotechnologies (Cologne, Germany) or custom-made 4x44K 60mer DNA microarrays from Agilent Technologies (Waldbronn, Germany). Hybridization of mixtures of Cy3- and Cy5-labelled cDNA on the arrays and washing of the arrays were performed as described by Frunzke et al. 2008, Polen & Wendisch 2003, and Vogt et al. 2014.

scan_protocol: The fluorescence of DNA microarrays was determined at 532 nm (Cy2-dUTP) and 635 nm (Cy5-dUTP) at 5 or 10 µm resolution with a GenePix 4000B laser scanner and GenePix Pro Software (Molecular Devices, Sunnyvale, USA).

data_processing:
The raw results were saved as GPR-files and processed and normalized using the BioConductor R packages limma and marray (http://www.bioconductor.org). For further analysis, loess-normalized data were saved in the in-house DNA microarray database (Polen et al. 2004) including detailed information about each experiment following MIAME standards (Brazma et al. 2009). Normalized ratios of medians reflecting the relative mRNA level were filtered for a signal-to-noise ratio ((F635Median/B635Median) or (F532Median/B532Median)) higher than 3. Statistical analysis for calculation of p-values was performed with a paired Student´s t-test comparing relative RNA levels for a gene to the relative RNA levels of all other genes in the replicates.
All listed GAL files are included in a tar archive on the SERIES record. The 'ID' field of the GAL files includes the Biomax IDs. A supplementary file provides the CG IDs for the Biomax IDs.

molecule: total RNA

organism: Corynebacterium glutamicum

source_name: WT (5 mM 4-hydroxybenzoic acid, 30 min)

label_protocol: Equal amounts of RNA (15-30 µg) were used for random hexamer primed synthesis of fluorescently labelled cDNA using the nucleotide analogous Cy3-dUTP or Cy5-dUTP (GE Healthcare, Eindhoven, Netherlands).

extract_protocol: Total RNA was isolated using the RNeasy Kit (Qiagen, Hilden, Germany) or as described by Wendisch et al. 2001.

tag: genotype

value: wild type

tag: condition

value: WT harvested during exponential growth phase 30 min after addition of 5 mM 4-hydroxybenzoic acid, CGXII glucose, date of experiment:2015-01, GEO:GSE69413

source_name: WT

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2015-01, GEO:GSE69413


description:
WT (5 mM coumaric acid,  0.2 mM citrate, 30 min) vs. WT-rep2
Biological replicate 2 of 2
original platform:
GPL22792

value: WT harvested during exponential growth phase 30 min after addition of 5 mM coumaric acid and 0.2 mM citrate, CGXII glucose, date of experiment:2014-02

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2014-02


description:
WT (5 mM coumaric acid,  0.2 mM citrate, 30 min) vs. WT-rep1
Biological replicate 1 of 2
original platform:
GPL22792


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB832IZG)

description:
https://www.encodeproject.org/experiments/ENCSR829ZLX/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR829ZLX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR239ZVK
encode release date: 2022-07-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB832IZG

value: 33 year

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos


description:
WT (5 mM caffeic acid, 30 min) vs. WT-rep2
Biological replicate 2 of 2
original platform:
GPL22561

source_name: WT (5 mM caffeic acid, 30 min)

value: WT harvested during exponential growth phase 30 min after addition of 5 mM caffeic acid, CGXII glucose, date of experiment:2014-07, GEO:GSE69413

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2014-07, GEO:GSE69413


description:
WT (5 mM caffeic acid, 30 min) vs. WT-rep1
Biological replicate 1 of 2
original platform:
GPL22561


description:
WT (5 mM coumaric acid, w/o PCA, 30 min) vs. WT (w/o PCA)-rep2
Biological replicate 2 of 2
original platform:
GPL22792

value: WT harvested during exponential growth phase 30 min after addition of 5 mM coumaric acid, CGXII glucose w/o protocatechuic acid, date of experiment:2014-01

source_name: WT (w/o PCA)

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2014-01


title: TF ChIP-seq from middle frontal area 46 (ENCLB428HJL)

description:
https://www.encodeproject.org/experiments/ENCSR251BHU/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on middle frontal area 46 tissue female adult (82 years)
experiment encode accession: ENCSR251BHU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR405BDN
encode release date: 2022-01-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB428HJL
size range: 200-600

source_name: Homo sapiens female adult (82 years) middle frontal area 46 tissue

value: CTCF

value: middle frontal area 46

value: tissue

value: 82 year

value: female

value: adult

value: Rush University

value: ENCBS712RMD at ENCODE; https://www.encodeproject.org/ENCBS712RMD/

value: Derived from ENCODE donor ENCDO290OPS; https://www.encodeproject.org/ENCDO290OPS/


description:
WT (5 mM coumaric acid,  30 min) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL22792

source_name: WT (5 mM coumaric acid,  30 min)

value: wild type

value: WT harvested during exponential growth phase 30 min after addition of 5 mM coumaric acid, CGXII glucose, date of experiment:2014-01/2015-01, GEO:GSE69413

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2014-01/2015-01, GEO:GSE69413


title: TF ChIP-seq from middle frontal area 46 (ENCLB488RIY)

description:
https://www.encodeproject.org/experiments/ENCSR251BHU/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on middle frontal area 46 tissue female adult (82 years)
experiment encode accession: ENCSR251BHU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR405BDN
encode release date: 2022-01-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB488RIY
size range: 200-600

value: Bradley Bernstein, Broad


description:
WT (5 mM coumaric acid,  30 min) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL22792


title: Histone ChIP-seq from right lobe of liver (ENCLB546FBC)

description:
https://www.encodeproject.org/experiments/ENCSR249KTU/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR249KTU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR886ATT
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB546FBC
size range: 200-600

source_name: Homo sapiens female adult (47 years) right lobe of liver tissue

value: right lobe of liver

value: 47 year

tag: health state

value: DM:no; HTN:yes; CAD:no

value: Shin Lin

value: ENCBS025MJZ at ENCODE; https://www.encodeproject.org/ENCBS025MJZ/

value: Derived from ENCODE donor ENCDO912EIY; https://www.encodeproject.org/ENCDO912EIY/


description:
WT (5 mM 3-(4-hydroxyphenyl) propionic acid, 30 min) vs. WT-rep2
Biological replicate 2 of 2
original platform:
GPL22561

value: WT harvested during exponential growth phase 30 min after addition of 5 mM 3-(4-hydroxyphenyl) propionic acid, CGXII glucose, date of experiment:2015-01, GEO:GSE69413

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2015-01, GEO:GSE69413


description:
WT (5 mM ferulic acid, 30 min) vs. WT-rep2
Biological replicate 2 of 2
original platform:
GPL22561

source_name: WT (5 mM ferulic acid, 30 min)

value: WT harvested during exponential growth phase 30 min after addition of 5 mM ferulic acid, CGXII glucose, date of experiment:2014-09, GEO:GSE69413

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment: 2014-09, GEO:GSE69413


title: Mint-ChIP-seq from HCT116 (ENCLB857JQR)

description:
https://www.encodeproject.org/experiments/ENCSR626SDX/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR626SDX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR614CRT
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB857JQR

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens BRD4 treated with 1uM 5-Phenyl-1H-indole-3-acetic acid for 6 hours

tag: line

value: cell line

value: 48 year

value: male

value: colorectal carcinoma

value: adult

value: Erez Aiden

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS087RNX at ENCODE; https://www.encodeproject.org/ENCBS087RNX/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: Histone ChIP-seq from right lobe of liver (ENCLB073VWX)

description:
https://www.encodeproject.org/experiments/ENCSR249KTU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR249KTU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR886ATT
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB073VWX
size range: 200-600

value: right lobe of liver

value: tissue

value: 47 year

value: female

value: DM:no; HTN:yes; CAD:no

value: Bradley Bernstein, Broad


description:
WT (5 mM coumaric acid, w/o PCA, 30 min) vs. WT (w/o PCA)-rep1
Biological replicate 1 of 2
original platform:
GPL22792

value: wild type

value: WT harvested during exponential growth phase 30 min after addition of 5 mM coumaric acid, CGXII glucose w/o protocatechuic acid, date of experiment:2014-01

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2014-01


description:
WT (5 mM cinnamic acid, 30 min) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL22561

source_name: WT (5 mM cinnamic acid, 30 min)

value: WT harvested during exponential growth phase 30 min after addition of 5 mM cinnamic acid, CGXII glucose, date of experiment:2014-09/2015-01, GEO:GSE69413

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2014-09/2015-01, GEO:GSE69413


description:
WT (5 mM cinnamic acid, 30 min) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL22561


title: Mint-ChIP-seq from HCT116 (ENCLB559NAX)

description:
https://www.encodeproject.org/experiments/ENCSR825HFI/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR825HFI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR071RJS
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB559NAX

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens BRD4

value: cell line

value: 48 year

value: male

value: colorectal carcinoma

value: ENCBS816ZRZ at ENCODE; https://www.encodeproject.org/ENCBS816ZRZ/


title: Mint-ChIP-seq from HCT116 (ENCLB170TJI)

description:
https://www.encodeproject.org/experiments/ENCSR825HFI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR825HFI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR071RJS
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB170TJI

value: adult

value: Erez Aiden

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: Mint-ChIP-seq from activated naive CD4-positive, alpha-beta T cell (ENCLB524MNV)

description:
https://www.encodeproject.org/experiments/ENCSR432JJQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR432JJQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR885JZJ
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB524MNV

source_name: Homo sapiens male adult (50 years) activated naive CD4-positive, alpha-beta T primary cell treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours

value: primary cell

value: 50 year

value: John Stamatoyannopoulos

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:72; duration_units:hour; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:72; duration_units:hour;

value: ENCBS572PDL at ENCODE; https://www.encodeproject.org/ENCBS572PDL/

value: Derived from ENCODE donor ENCDO641WTL; https://www.encodeproject.org/ENCDO641WTL/


description:
WT (5 mM coumaric acid,  30 min) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL22792

value: wild type

value: WT harvested during exponential growth phase 30 min after addition of 5 mM coumaric acid, CGXII glucose, date of experiment:2014-01/2015-01, GEO:GSE69413

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2014-01/2015-01, GEO:GSE69413


description:
WT (0.5 mM cumene hydroperoxide) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL15451

source_name: WT (0.5 mM cumene hydroperoxide)

value: WT harvested during exponential growth phase, CGXII glucose + 0.5 mM cumene hydroperoxide, date of experiment:2008-05/2008-07

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2008-05/2008-07


title: Mint-ChIP-seq from HCT116 (ENCLB967CEP)

description:
https://www.encodeproject.org/experiments/ENCSR626JLT/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR626JLT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR071RJS
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB967CEP

value: cell line

value: 48 year

value: male

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from HCT116 (ENCLB439TYJ)

description:
https://www.encodeproject.org/experiments/ENCSR626JLT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR626JLT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR071RJS
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB439TYJ

value: colorectal carcinoma

value: adult

value: Erez Aiden

value: ENCBS816ZRZ at ENCODE; https://www.encodeproject.org/ENCBS816ZRZ/


description:
WT (0.5 mM cumene hydroperoxide) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL15451


title: Mint-ChIP-seq from HCT116 (ENCLB514KHG)

description:
https://www.encodeproject.org/experiments/ENCSR626SDX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR626SDX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR614CRT
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB514KHG

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS087RNX at ENCODE; https://www.encodeproject.org/ENCBS087RNX/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


description:
WT (0.5 mM cumene hydroperoxide) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL15451


title: Histone ChIP-seq from middle frontal area 46 (ENCLB316PUK)

description:
https://www.encodeproject.org/experiments/ENCSR245QRV/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR245QRV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR103IXF
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB316PUK
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) with Alzheimer's disease; middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: 90 or above year

value: female

value: Rush University

value: ENCBS112RAT at ENCODE; https://www.encodeproject.org/ENCBS112RAT/

value: Derived from ENCODE donor ENCDO597SRH; https://www.encodeproject.org/ENCDO597SRH/


description:
WT (5 mM ferulic acid, 30 min) vs. WT-rep1
Biological replicate 1 of 2
original platform:
GPL22561

value: wild type

value: WT harvested during exponential growth phase 30 min after addition of 5 mM ferulic acid, CGXII glucose, date of experiment:2014-09, GEO:GSE69413

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment: 2014-09, GEO:GSE69413


description:
WT (2% acetate, w/o (KH2PO4, K2HPO4), 90 min) vs. WT (4% glucose, w/o (KH2PO4, K2HPO4), 90 min)-rep1
Biological replicate 1 of 2
GAL file:
CG_GAL_PCR_Layout_05.gal

value: WT harvested during exponential growth phase 90 min after switch to phosphate starvation, CGXII 2% acetate, w/o KH2PO4, K2HPO4, date of experiment:2005-10

value: WT harvested during exponential growth phase 90 min after switch to phosphate starvation, CGXII 4% glucose, w/o KH2PO4, K2HPO4, date of experiment:2005-08


description:
WT (2% acetate, w/o (KH2PO4, K2HPO4), 90 min) vs. WT (1% glucose, w/o (KH2PO4, K2HPO4), 90 min)-rep3
Biological replicate 3 of 3
GAL file:
CG_GAL_PCR_Layout_00.gal

value: WT harvested during exponential growth phase 90 min after switch to phosphate starvation, CGXII 2% acetate, w/o KH2PO4, K2HPO4, date of experiment:2005-08

value: WT harvested during exponential growth phase 90 min after switch to phosphate starvation, CGXII 1% glucose, w/o KH2PO4, K2HPO4, date of experiment:2005-08


description:
WT (2% acetate, w/o (KH2PO4, K2HPO4), 90 min) vs. WT (4% glucose, w/o (KH2PO4, K2HPO4), 90 min)-rep2
Biological replicate 2 of 2
GAL file:
CG_GAL_PCR_Layout_05.gal


description:
WT (2% acetate, w/o (KH2PO4, K2HPO4), 90 min) vs. WT (1% glucose, w/o (KH2PO4, K2HPO4), 90 min)-rep1
Biological replicate 1 of 3
GAL file:
CG_GAL_PCR_Layout_00.gal


title: Histone ChIP-seq from middle frontal area 46 (ENCLB450AEI)

description:
https://www.encodeproject.org/experiments/ENCSR245QRV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR245QRV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR103IXF
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB450AEI
size range: 200-600

value: adult

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from stimulated activated naive B cell (ENCLB334LVP)

description:
https://www.encodeproject.org/experiments/ENCSR432BPP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR432BPP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR390KLC
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB334LVP

source_name: Homo sapiens male adult (40 years) stimulated activated naive B primary cell treated with 1ug/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10ug/mL anti-IgM for 72 hours

value: stimulated activated naive B cell

value: primary cell

value: 40 year

value: male

value: John Stamatoyannopoulos

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:72; duration_units:hour; temperature:37; temperature_units:Celsius; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:72; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:72; duration_units:hour; temperature:37; temperature_units:Celsius;

value: ENCBS304VHM at ENCODE; https://www.encodeproject.org/ENCBS304VHM/

value: Derived from ENCODE donor ENCDO512FEI; https://www.encodeproject.org/ENCDO512FEI/


description:
WT (2% acetate, w/o (KH2PO4, K2HPO4), 90 min) vs. WT (1% glucose, w/o (KH2PO4, K2HPO4), 90 min)-rep2
Biological replicate 2 of 3
GAL file:
CG_GAL_PCR_Layout_00.gal

value: wild type


title: Mint-ChIP-seq from HCT116 (ENCLB779FAL)

description:
https://www.encodeproject.org/experiments/ENCSR824SFU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR824SFU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR099TYF
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB779FAL

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens CTCF treated with 1uM 5-Phenyl-1H-indole-3-acetic acid for 6 hours

value: cell line

value: 48 year

value: colorectal carcinoma

value: Erez Aiden

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS033MSP at ENCODE; https://www.encodeproject.org/ENCBS033MSP/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB278NHT)

description:
https://www.encodeproject.org/experiments/ENCSR245QRV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR245QRV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR103IXF
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB278NHT
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: 90 or above year

value: female

value: adult

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS825MDV at ENCODE; https://www.encodeproject.org/ENCBS825MDV/

value: Derived from ENCODE donor ENCDO597SRH; https://www.encodeproject.org/ENCDO597SRH/


title: Mint-ChIP-seq from stimulated activated naive B cell (ENCLB545LPE)

description:
https://www.encodeproject.org/experiments/ENCSR432BPP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR432BPP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR390KLC
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB545LPE

value: stimulated activated naive B cell

value: primary cell

value: 40 year

value: male

value: John Stamatoyannopoulos

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:72; duration_units:hour; temperature:37; temperature_units:Celsius; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:72; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:72; duration_units:hour; temperature:37; temperature_units:Celsius;

value: ENCBS304VHM at ENCODE; https://www.encodeproject.org/ENCBS304VHM/

value: Derived from ENCODE donor ENCDO512FEI; https://www.encodeproject.org/ENCDO512FEI/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB167VBQ)

description:
https://www.encodeproject.org/experiments/ENCSR245QRV/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR245QRV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR103IXF
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB167VBQ
size range: 200-600

value: middle frontal area 46


title: WT (0.5 mM FeSO4) vs. WT-rep2

description:
WT (0.5 mM FeSO4) vs. WT-rep2
Biological replicate 2 of 3
GAL file:
CG_GAL_PCR_Layout_02.gal

source_name: WT (0.5 mM FeSO4)

value: wild type

value: WT harvested during exponential growth phase, CGXII glucose + 0.5 mM FeSO4, date of experiment:2002-12/2003-01

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2002-12/2003-01


title: Mint-ChIP-seq from activated naive CD4-positive, alpha-beta T cell (ENCLB769SLR)

description:
https://www.encodeproject.org/experiments/ENCSR432JJQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR432JJQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR885JZJ
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB769SLR

value: 50 year

value: adult

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:72; duration_units:hour; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:72; duration_units:hour;

value: ENCBS572PDL at ENCODE; https://www.encodeproject.org/ENCBS572PDL/

value: Derived from ENCODE donor ENCDO641WTL; https://www.encodeproject.org/ENCDO641WTL/


description:
WT (5 mM cinnamic acid, 30 min) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL22561

value: WT harvested during exponential growth phase 30 min after addition of 5 mM cinnamic acid, CGXII glucose, date of experiment:2014-09/2015-01, GEO:GSE69413

source_name: WT

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2014-09/2015-01, GEO:GSE69413


description:
WT (2.5 µM heme) vs. WT (2.5 µM FeSO4)-rep2
Biological replicate 2 of 3
original platform:
GPL15451

source_name: WT (2.5 µM heme)

value: WT harvested during exponential growth phase, CGXII glucose + 2.5 µM heme, date of experiment:2009-12/2010-01/2010-02, GEO:GSE26122

source_name: WT (2.5 µM FeSO4)

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2009-12/2010-01/2010-02, GEO:GSE26122


description:
WT (2.5 µM heme) vs. WT (2.5 µM FeSO4)-rep3
Biological replicate 3 of 3
original platform:
GPL15451


title: WT (0.5 mM FeSO4) vs. WT-rep1

description:
WT (0.5 mM FeSO4) vs. WT-rep1
Biological replicate 1 of 3
GAL file:
CG_GAL_PCR_Layout_02.gal


title: Mint-ChIP-seq from stimulated activated naive CD8-positive, alpha-beta T cell (ENCLB147LVA)

description:
https://www.encodeproject.org/experiments/ENCSR625QYU/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR625QYU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR414ZUR
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB147LVA

source_name: Homo sapiens male adult (36 years) stimulated activated naive CD8-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours

value: primary cell

value: 36 year

value: male

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:72; duration_units:hour;

value: ENCBS253TXN at ENCODE; https://www.encodeproject.org/ENCBS253TXN/

value: Derived from ENCODE donor ENCDO424UPQ; https://www.encodeproject.org/ENCDO424UPQ/


description:
WT (1 µM FeSO4, harvest OD 15) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL22794

source_name: WT (1 µM FeSO4, har

value: wild type

value: WT harvested during stationary growth phase, CGXII glucose + 1 µM FeSO4, date of experiment:2016-03/2016-09, GEO:GSE92359

source_name: est OD 15)

value: WT harvested during stationary growth phase, CGXII glucose, date of experiment:2016-03/2016-09, GEO:GSE92359


description:
WT (2.5 µM heme) vs. WT (2.5 µM FeSO4)-rep1
Biological replicate 1 of 3
original platform:
GPL15451


title: WT (0.5 mM FeSO4) vs. WT-rep3

description:
WT (0.5 mM FeSO4) vs. WT-rep3
Biological replicate 3 of 3
GAL file:
CG_GAL_PCR_Layout_02.gal

value: WT harvested during exponential growth phase, CGXII glucose + 0.5 mM FeSO4, date of experiment:2002-12/2003-01

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2002-12/2003-01


title: Mint-ChIP-seq from stimulated activated naive CD8-positive, alpha-beta T cell (ENCLB706GBJ)

description:
https://www.encodeproject.org/experiments/ENCSR625QYU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR625QYU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR414ZUR
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB706GBJ

value: adult


title: Mint-ChIP-seq from naive B cell (ENCLB875UFY)

description:
https://www.encodeproject.org/experiments/ENCSR243UDR/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR243UDR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR575ZCX
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB875UFY

source_name: Homo sapiens female adult (39 years) naive B primary cell

value: naive B cell

value: 39 year

value: female

value: ENCBS531INH at ENCODE; https://www.encodeproject.org/ENCBS531INH/

value: Derived from ENCODE donor ENCDO352FHC; https://www.encodeproject.org/ENCDO352FHC/


description:
WT (1 µM FeSO4, harvest OD 15) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL22794


title: Mint-ChIP-seq from natural killer cell (ENCLB971RUO)

description:
https://www.encodeproject.org/experiments/ENCSR823HHN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR823HHN
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR294RLP
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB971RUO

source_name: Homo sapiens female adult (41 years) natural killer primary cell

value: natural killer cell

value: primary cell

value: 41 year

value: ENCBS543UGM at ENCODE; https://www.encodeproject.org/ENCBS543UGM/

value: Derived from ENCODE donor ENCDO911LCI; https://www.encodeproject.org/ENCDO911LCI/


title: Mint-ChIP-seq from naive B cell (ENCLB904JOR)

description:
https://www.encodeproject.org/experiments/ENCSR243UDR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR243UDR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR575ZCX
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB904JOR

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos


description:
WT (1 µM FeSO4, harvest OD 15) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL22794

value: wild type

value: WT harvested during stationary growth phase, CGXII glucose + 1 µM FeSO4, date of experiment:2016-03/2016-09, GEO:GSE92359


title: Mint-ChIP-seq from HCT116 (ENCLB726PIN)

description:
https://www.encodeproject.org/experiments/ENCSR824SFU/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR824SFU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR099TYF
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB726PIN

value: cell line

value: 48 year

value: male

value: colorectal carcinoma

value: Erez Aiden

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS033MSP at ENCODE; https://www.encodeproject.org/ENCBS033MSP/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


description:
WT (1 µM FeSO4, harvest OD 2.5) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL22792

value: WT harvested during exponential growth phase (OD 2.5), CGXII glucose + 1 µM FeSO4, date of experiment:2013-02, GEO:GSE92348

source_name: est OD 2.5)

value: WT harvested during exponential growth phase (OD 2.5), CGXII glucose, date of experiment:2013-02, GEO:GSE92348


title: Mint-ChIP-seq from HCT116 (ENCLB347WJQ)

description:
https://www.encodeproject.org/experiments/ENCSR624FOD/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR624FOD
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR848XKY
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB347WJQ

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens SMARCA5

value: adult

value: ENCBS599GGB at ENCODE; https://www.encodeproject.org/ENCBS599GGB/


title: Histone ChIP-seq from upper lobe of right lung (ENCLB976POQ)

description:
https://www.encodeproject.org/experiments/ENCSR430ZIQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR430ZIQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR750BQT
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB976POQ
size range: 200-600

source_name: Homo sapiens male adult (60 years) upper lobe of right lung tissue

value: upper lobe of right lung

value: tissue

value: 60 year

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: Shin Lin

value: ENCBS339XRG at ENCODE; https://www.encodeproject.org/ENCBS339XRG/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


description:
WT (1 µM FeSO4, harvest OD 2.5) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL22792

value: wild type


title: Mint-ChIP-seq from HCT116 (ENCLB448WXY)

description:
https://www.encodeproject.org/experiments/ENCSR624FOD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR624FOD
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR848XKY
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB448WXY

value: cell line

value: 48 year

value: male

value: colorectal carcinoma

value: Bradley Bernstein, Broad


description:
WT (1 µM FeSO4, harvest OD 1.7) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL22561

value: WT harvested during exponential growth phase (OD 1.7), CGXII glucose + 1 µM FeSO4, date of experiment:2014-12

source_name: est OD 1.7)

value: WT harvested during exponential growth phase (OD 1.7), CGXII glucose, date of experiment:2014-12


description:
WT (1 µM FeSO4, harvest OD 2.5) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL22792

value: WT harvested during exponential growth phase (OD 2.5), CGXII glucose + 1 µM FeSO4, date of experiment:2013-02, GEO:GSE92348

value: WT harvested during exponential growth phase (OD 2.5), CGXII glucose, date of experiment:2013-02, GEO:GSE92348


description:
WT (1 µM FeSO4, harvest OD 1.7) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL22561


description:
WT (1 µM FeSO4, harvest OD 1.7) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL22561


title: Histone ChIP-seq from upper lobe of right lung (ENCLB704ZOP)

description:
https://www.encodeproject.org/experiments/ENCSR430ZIQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR430ZIQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR750BQT
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB704ZOP
size range: 200-600

value: upper lobe of right lung

value: adult


title: Mint-ChIP-seq from natural killer cell (ENCLB172MRI)

description:
https://www.encodeproject.org/experiments/ENCSR823HHN/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR823HHN
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR294RLP
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB172MRI

value: natural killer cell

value: primary cell

value: 41 year

value: female

value: John Stamatoyannopoulos

value: ENCBS543UGM at ENCODE; https://www.encodeproject.org/ENCBS543UGM/

value: Derived from ENCODE donor ENCDO911LCI; https://www.encodeproject.org/ENCDO911LCI/


title: Mint-ChIP-seq from natural killer cell (ENCLB864ARK)

description:
https://www.encodeproject.org/experiments/ENCSR822WVQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR822WVQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR430XVL
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB864ARK

source_name: Homo sapiens female adult (41 years) natural killer primary cell treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for...

value: treatment_term_id:UniProtKB:Q14116; treatment_term_name:Interleukin-18; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P29460; treatment_term_name:Interleukin-12 subunit beta; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:72; duration_units:hour;

value: ENCBS623MIU at ENCODE; https://www.encodeproject.org/ENCBS623MIU/


title: Mint-ChIP-seq from natural killer cell (ENCLB932RNE)

description:
https://www.encodeproject.org/experiments/ENCSR822WVQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR822WVQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR430XVL
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB932RNE


title: Mint-ChIP-seq from natural killer cell (ENCLB953HJN)

description:
https://www.encodeproject.org/experiments/ENCSR822WVQ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR822WVQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR430XVL
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB953HJN

value: ENCBS492DTF at ENCODE; https://www.encodeproject.org/ENCBS492DTF/


title: Control ChIP-seq from middle frontal area 46 (ENCLB718YJX)

description:
https://www.encodeproject.org/experiments/ENCSR243LHN/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR243LHN
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-06-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB718YJX
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) with Alzheimer's disease; middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: 90 or above year

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS708DHS at ENCODE; https://www.encodeproject.org/ENCBS708DHS/

value: Derived from ENCODE donor ENCDO223NTQ; https://www.encodeproject.org/ENCDO223NTQ/


title: WT (20 µM CuSO4) vs. WT-rep2

description:
WT (20 µM CuSO4) vs. WT-rep2
Biological replicate 2 of 4
original platform:
GPL9860

source_name: WT (20 µM CuSO4)

value: wild type

value: WT harvested during exponential growth phase, CGXII glucose + 20 µM CuSO4, date of experiment:2007-10/2007-12/2008-01, GEO:GSE27510

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2007-10/2007-12/2008-01, GEO:GSE27510


title: WT (20 µM CuSO4) vs. WT-rep3

description:
WT (20 µM CuSO4) vs. WT-rep3
Biological replicate 3 of 4
original platform:
GPL9860


title: Mint-ChIP-seq from natural killer cell (ENCLB227CAF)

description:
https://www.encodeproject.org/experiments/ENCSR240IEK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR240IEK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR457FTM
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB227CAF

source_name: Homo sapiens male adult (33 years) natural killer primary cell

value: natural killer cell

value: primary cell

value: 33 year

value: male

value: adult

value: Charles Lee

value: ENCBS358EEP at ENCODE; https://www.encodeproject.org/ENCBS358EEP/

value: Derived from ENCODE donor ENCDO195VEA; https://www.encodeproject.org/ENCDO195VEA/


title: Control Mint-ChIP-seq from natural killer cell (ENCLB436ZUC)

description:
https://www.encodeproject.org/experiments/ENCSR430XVL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR430XVL
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-04-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB436ZUC

value: 41 year

value: female

value: John Stamatoyannopoulos

value: treatment_term_id:UniProtKB:Q14116; treatment_term_name:Interleukin-18; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P29460; treatment_term_name:Interleukin-12 subunit beta; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:72; duration_units:hour;

value: ENCBS623MIU at ENCODE; https://www.encodeproject.org/ENCBS623MIU/

value: Derived from ENCODE donor ENCDO911LCI; https://www.encodeproject.org/ENCDO911LCI/


title: Mint-ChIP-seq from natural killer cell (ENCLB692ZOQ)

description:
https://www.encodeproject.org/experiments/ENCSR240IEK/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR240IEK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR457FTM
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB692ZOQ

value: Bradley Bernstein, Broad


title: WT (20 µM CuSO4) vs. WT-rep1

description:
WT (20 µM CuSO4) vs. WT-rep1
Biological replicate 1 of 4
original platform:
GPL9860

value: wild type

value: WT harvested during exponential growth phase, CGXII glucose + 20 µM CuSO4, date of experiment:2007-10/2007-12/2008-01, GEO:GSE27510


title: WT (w/o CuSO4 + 150 µM BCS) vs. WT-rep2

description:
WT (w/o CuSO4 + 150 µM BCS) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL15451

source_name: WT (w/o CuSO4 + 150 µM BCS)

value: WT harvested during exponential growth phase, CGXII glucose w/o CuSO4 + 150 µM r bathocuproine disulfonate (BCS), date of experiment:2012-08, GEO:GSE117530

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2012-08, GEO:GSE117530


title: Control ChIP-seq from middle frontal area 46 (ENCLB685LPM)

description:
https://www.encodeproject.org/experiments/ENCSR243LHN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR243LHN
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-06-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB685LPM
size range: 200-600

value: middle frontal area 46

value: tissue

value: 90 or above year

value: Rush University

value: ENCBS708DHS at ENCODE; https://www.encodeproject.org/ENCBS708DHS/

value: Derived from ENCODE donor ENCDO223NTQ; https://www.encodeproject.org/ENCDO223NTQ/


title: Control Mint-ChIP-seq from natural killer cell (ENCLB463IKM)

description:
https://www.encodeproject.org/experiments/ENCSR430XVL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR430XVL
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-04-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB463IKM

value: natural killer cell

value: primary cell

value: 41 year

value: adult

value: ENCBS492DTF at ENCODE; https://www.encodeproject.org/ENCBS492DTF/


title: Mint-ChIP-seq from natural killer cell (ENCLB073MCM)

description:
https://www.encodeproject.org/experiments/ENCSR822WVQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR822WVQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR430XVL
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB073MCM

value: female

value: John Stamatoyannopoulos

value: treatment_term_id:UniProtKB:Q14116; treatment_term_name:Interleukin-18; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P29460; treatment_term_name:Interleukin-12 subunit beta; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:72; duration_units:hour;

value: Derived from ENCODE donor ENCDO911LCI; https://www.encodeproject.org/ENCDO911LCI/


title: WT (w/o CuSO4 + 150 µM BCS) vs. WT-rep3

description:
WT (w/o CuSO4 + 150 µM BCS) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL15451

value: wild type

value: WT harvested during exponential growth phase, CGXII glucose w/o CuSO4 + 150 µM r bathocuproine disulfonate (BCS), date of experiment:2012-08, GEO:GSE117530

source_name: WT


title: WT (w/o CuSO4 + 150 µM BCS) vs. WT-rep1

description:
WT (w/o CuSO4 + 150 µM BCS) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL15451

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2012-08, GEO:GSE117530


title: Control Mint-ChIP-seq from natural killer cell (ENCLB825DKO)

description:
https://www.encodeproject.org/experiments/ENCSR430XVL/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR430XVL
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-04-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB825DKO

value: Bradley Bernstein, Broad

value: ENCBS623MIU at ENCODE; https://www.encodeproject.org/ENCBS623MIU/


title: Mint-ChIP-seq from HCT116 (ENCLB633GUV)

description:
https://www.encodeproject.org/experiments/ENCSR623XKX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR623XKX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR933ZIE
encode release date: 2022-06-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB633GUV

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens POLR2A

value: cell line

value: 48 year

value: male

value: colorectal carcinoma

value: Erez Aiden

value: ENCBS169OGM at ENCODE; https://www.encodeproject.org/ENCBS169OGM/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: Control Mint-ChIP-seq from memory B cell (ENCLB022UMD)

description:
https://www.encodeproject.org/experiments/ENCSR430DND/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR430DND
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB022UMD

source_name: Homo sapiens male adult (40 years) memory B primary cell

value: memory B cell

value: primary cell

value: 40 year

value: adult

value: ENCBS880QZN at ENCODE; https://www.encodeproject.org/ENCBS880QZN/

value: Derived from ENCODE donor ENCDO512FEI; https://www.encodeproject.org/ENCDO512FEI/


title: Mint-ChIP-seq from HCT116 (ENCLB119XHG)

description:
https://www.encodeproject.org/experiments/ENCSR623XKX/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR623XKX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR933ZIE
encode release date: 2022-06-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB119XHG


title: WT (20 µM CuSO4) vs. WT-rep4

description:
WT (20 µM CuSO4) vs. WT-rep4
Biological replicate 4 of 4
original platform:
GPL9860

value: wild type

value: WT harvested during exponential growth phase, CGXII glucose + 20 µM CuSO4, date of experiment:2007-10/2007-12/2008-01, GEO:GSE27510

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2007-10/2007-12/2008-01, GEO:GSE27510


description:
WT (w/o CuSO4, harvest OD 5) vs. WT (harvest OD 5)-rep2
Biological replicate 2 of 4
original platform:
GPL15451

source_name: WT (w/o CuSO4, har

value: WT harvested during exponential growth phase, CGXII glucose w/o CuSO4, date of experiment:2009-04/2009-05/2009-06

source_name: est OD 5)

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2009-04/2009-05/2009-06


title: Control Mint-ChIP-seq from natural killer cell (ENCLB588HIJ)

description:
https://www.encodeproject.org/experiments/ENCSR430XVL/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR430XVL
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-04-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB588HIJ

value: natural killer cell

value: 41 year

value: female

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: treatment_term_id:UniProtKB:Q14116; treatment_term_name:Interleukin-18; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P29460; treatment_term_name:Interleukin-12 subunit beta; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:72; duration_units:hour;

value: ENCBS492DTF at ENCODE; https://www.encodeproject.org/ENCBS492DTF/

value: Derived from ENCODE donor ENCDO911LCI; https://www.encodeproject.org/ENCDO911LCI/


description:
WT (w/o CuSO4, harvest OD 20) vs. WT (harvest OD 20)-rep4
Biological replicate 4 of 4
original platform:
GPL15451

value: WT harvested during stationary growth phase, CGXII glucose w/o CuSO4, date of experiment:2009-04/2009-05/2009-06/2009-08

source_name: est OD 20)

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2009-04/2009-05/2009-06/2009-08


description:
WT (w/o CuSO4, harvest OD 5) vs. WT (harvest OD 5)-rep4
Biological replicate 4 of 4
original platform:
GPL15451


description:
WT (w/o CuSO4, harvest OD 20) vs. WT (harvest OD 20)-rep3
Biological replicate 3 of 4
original platform:
GPL15451


description:
WT (w/o CuSO4, harvest OD 20) vs. WT (harvest OD 20)-rep1
Biological replicate 1 of 4
original platform:
GPL15451


title: Control Mint-ChIP-seq from memory B cell (ENCLB371XEW)

description:
https://www.encodeproject.org/experiments/ENCSR430DND/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR430DND
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB371XEW

value: memory B cell

value: primary cell

value: 40 year

value: male

value: adult

value: ENCBS880QZN at ENCODE; https://www.encodeproject.org/ENCBS880QZN/


description:
WT (w/o CuSO4, harvest OD 20) vs. WT (harvest OD 20)-rep2
Biological replicate 2 of 4
original platform:
GPL15451

value: wild type


title: Control Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB196YZK)

description:
https://www.encodeproject.org/experiments/ENCSR239ZVK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR239ZVK
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB196YZK

source_name: Homo sapiens male adult (33 years) naive thymus-derived CD8-positive, alpha-beta T primary cell

value: 33 year

value: ENCBS538USD at ENCODE; https://www.encodeproject.org/ENCBS538USD/

value: Derived from ENCODE donor ENCDO830ROH; https://www.encodeproject.org/ENCDO830ROH/


description:
WT (0.6 µM mitomycin C, harvest after 6 h) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL16988

source_name: WT (0.6 µM mitomycin C, har

value: WT harvested during exponential growth phase 6 h after addition of mitomycin C, CGXII glucose, date of experiment:2012-06/2012-08, GEO:GSE45907

source_name: est after 6 h)

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2012-06/2012-08, GEO:GSE45907


title: Control Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB098TCZ)

description:
https://www.encodeproject.org/experiments/ENCSR239ZVK/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR239ZVK
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB098TCZ

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos


title: Mint-ChIP-seq from natural killer cell (ENCLB422BLS)

description:
https://www.encodeproject.org/experiments/ENCSR237OOE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR237OOE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR294RLP
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB422BLS

source_name: Homo sapiens female adult (41 years) natural killer primary cell

value: natural killer cell

value: 41 year

value: female

value: ENCBS543UGM at ENCODE; https://www.encodeproject.org/ENCBS543UGM/

value: Derived from ENCODE donor ENCDO911LCI; https://www.encodeproject.org/ENCDO911LCI/


title: Mint-ChIP-seq from natural killer cell (ENCLB140VKK)

description:
https://www.encodeproject.org/experiments/ENCSR237OOE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR237OOE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR294RLP
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB140VKK

value: primary cell


description:
WT (0.6 µM mitomycin C, harvest after 6 h) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL16988


description:
WT (0.6 µM mitomycin C, harvest after 6 h) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL16988


description:
WT (0.6 µM mitomycin C, harvest after 3 h) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL16988

value: WT harvested during exponential growth phase 3 h after addition of mitomycin C, CGXII glucose, date of experiment:2012-06/2012-08, GEO:GSE45907

source_name: est after 3 h)


title: TF ChIP-seq from middle frontal area 46 (ENCLB552OYB)

description:
https://www.encodeproject.org/experiments/ENCSR819WDZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR819WDZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR405NKC
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB552OYB
size range: 200-600

value: CTCF

value: middle frontal area 46

value: tissue

value: 90 or above year

value: adult

value: Rush University

value: ENCBS873GIH at ENCODE; https://www.encodeproject.org/ENCBS873GIH/

value: Derived from ENCODE donor ENCDO730UYW; https://www.encodeproject.org/ENCDO730UYW/


title: TF ChIP-seq from middle frontal area 46 (ENCLB541RHA)

description:
https://www.encodeproject.org/experiments/ENCSR819WDZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR819WDZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR405NKC
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB541RHA
size range: 200-600

value: Bradley Bernstein, Broad


description:
WT (0.6 µM mitomycin C, harvest after 3 h) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL16988

value: wild type

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2012-06/2012-08, GEO:GSE45907


description:
WT (w/o CuSO4, harvest OD 5) vs. WT (harvest OD 5)-rep3
Biological replicate 3 of 4
original platform:
GPL15451

value: WT harvested during exponential growth phase, CGXII glucose w/o CuSO4, date of experiment:2009-04/2009-05/2009-06

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2009-04/2009-05/2009-06


description:
WT (0.6 µM mitomycin C, harvest after 1 h) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL22792

value: WT harvested during exponential growth phase 1 h after addition of mitomycin C, CGXII glucose, date of experiment:2012-06/2012-08, GEO:GSE45907

source_name: est after 1 h)


title: Mint-ChIP-seq from T-helper 17 cell (ENCLB921OXE)

description:
https://www.encodeproject.org/experiments/ENCSR819NCZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR819NCZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR104DYP
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB921OXE

source_name: Homo sapiens male adult (50 years) T-helper 17 primary cell

value: T-helper 17 cell

value: 50 year

value: male

value: John Stamatoyannopoulos

value: ENCBS720LKW at ENCODE; https://www.encodeproject.org/ENCBS720LKW/

value: Derived from ENCODE donor ENCDO641WTL; https://www.encodeproject.org/ENCDO641WTL/


title: Histone ChIP-seq from heart right ventricle (ENCLB523MVR)

description:
https://www.encodeproject.org/experiments/ENCSR427TBJ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 ChIP-seq on heart right ventricle tissue male adult (43 years).
experiment encode accession: ENCSR427TBJ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR481QDJ
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB523MVR
size range: 200-600

source_name: Homo sapiens male adult (43 years) heart right ventricle tissue

value: heart right ventricle

value: tissue

value: 43 year

value: Shin Lin

value: nonischemic (EF 23%, LVEDD 6.1; RV moderate dilation, normal function)

value: ENCBS096INK at ENCODE; https://www.encodeproject.org/ENCBS096INK/

value: Derived from ENCODE donor ENCDO967KID; https://www.encodeproject.org/ENCDO967KID/


title: Mint-ChIP-seq from HCT116 (ENCLB290HOZ)

description:
https://www.encodeproject.org/experiments/ENCSR236UEE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR236UEE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR099TYF
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB290HOZ

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens CTCF treated with 1uM 5-Phenyl-1H-indole-3-acetic acid for 6 hours

value: cell line

value: 48 year

value: colorectal carcinoma

value: adult

value: Bradley Bernstein, Broad

value: Erez Aiden

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS033MSP at ENCODE; https://www.encodeproject.org/ENCBS033MSP/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


description:
WT (w/o CuSO4, harvest OD 5) vs. WT (harvest OD 5)-rep1
Biological replicate 1 of 4
original platform:
GPL15451

value: wild type

value: WT harvested during exponential growth phase, CGXII glucose w/o CuSO4, date of experiment:2009-04/2009-05/2009-06

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2009-04/2009-05/2009-06


title: Histone ChIP-seq from heart right ventricle (ENCLB448IQR)

description:
https://www.encodeproject.org/experiments/ENCSR427TBJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on heart right ventricle tissue male adult (43 years).
experiment encode accession: ENCSR427TBJ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR481QDJ
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB448IQR
size range: 200-600

value: heart right ventricle

value: tissue

value: male

value: 43 year


title: Mint-ChIP-seq from T-helper 17 cell (ENCLB784OGQ)

description:
https://www.encodeproject.org/experiments/ENCSR819NCZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR819NCZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR104DYP
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB784OGQ

value: T-helper 17 cell

value: primary cell

value: 50 year

value: John Stamatoyannopoulos

value: ENCBS720LKW at ENCODE; https://www.encodeproject.org/ENCBS720LKW/

value: Derived from ENCODE donor ENCDO641WTL; https://www.encodeproject.org/ENCDO641WTL/


title: WT (1 µg/mL bacitracin) vs. WT-rep2

description:
WT (1 µg/mL bacitracin) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL9860

source_name: WT (1 µg/mL bacitracin)

value: WT harvested during exponential growth phase, CGXII bacitracin, date of experiment:2011-08, GEO:GSE97961

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2011-08, GEO:GSE97961


description:
WT (0.6 µM mitomycin C, harvest after 1 h) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL22792

value: WT harvested during exponential growth phase 1 h after addition of mitomycin C, CGXII glucose, date of experiment:2012-06/2012-08, GEO:GSE45907

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2012-06/2012-08, GEO:GSE45907


title: WT (1 µg/mL bacitracin) vs. WT-rep1

description:
WT (1 µg/mL bacitracin) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL9860

value: wild type


description:
WT (0.6 µM mitomycin C, harvest after 30 min) vs. WT-rep2
Biological replicate 2 of 2
original platform:
GPL22792

value: WT harvested during exponential growth phase 30 min after addition of mitomycin C, CGXII glucose, date of experiment:2012-08

source_name: est after 30 min)

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2012-08


title: Mint-ChIP-seq from HCT116 (ENCLB197SPZ)

description:
https://www.encodeproject.org/experiments/ENCSR236UEE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR236UEE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR099TYF
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB197SPZ

value: cell line

value: 48 year

value: colorectal carcinoma

value: adult

value: Bradley Bernstein, Broad

value: Erez Aiden

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS033MSP at ENCODE; https://www.encodeproject.org/ENCBS033MSP/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


description:
WT (0.6 µM mitomycin C, harvest after 1 h) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL22792


title: Histone ChIP-seq from middle frontal area 46 (ENCLB023YZL)

description:
https://www.encodeproject.org/experiments/ENCSR817PGE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR817PGE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR572GRM
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB023YZL
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: 90 or above year

value: female

value: Rush University

value: ENCBS965OCN at ENCODE; https://www.encodeproject.org/ENCBS965OCN/

value: Derived from ENCODE donor ENCDO470GFA; https://www.encodeproject.org/ENCDO470GFA/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB905UEE)

description:
https://www.encodeproject.org/experiments/ENCSR622MUH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR622MUH
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR018KWK
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB905UEE
size range: 200-600

source_name: Homo sapiens male adult (90 or above years) with Alzheimer's disease; middle frontal area 46 tissue

value: male

value: ENCBS641FUL at ENCODE; https://www.encodeproject.org/ENCBS641FUL/

value: Derived from ENCODE donor ENCDO197QVG; https://www.encodeproject.org/ENCDO197QVG/


description:
WT (0.6 µM mitomycin C, harvest after 30 min) vs. WT-rep1
Biological replicate 1 of 2
original platform:
GPL22792

value: wild type

value: WT harvested during exponential growth phase 30 min after addition of mitomycin C, CGXII glucose, date of experiment:2012-08

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2012-08


title: WT (1 µg/mL bacitracin) vs. WT-rep3

description:
WT (1 µg/mL bacitracin) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL9860

value: WT harvested during exponential growth phase, CGXII bacitracin, date of experiment:2011-08, GEO:GSE97961

source_name: WT

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2011-08, GEO:GSE97961


title: Histone ChIP-seq from middle frontal area 46 (ENCLB699IMD)

description:
https://www.encodeproject.org/experiments/ENCSR817PGE/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR817PGE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR572GRM
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB699IMD
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) with Alzheimer's disease; middle frontal area 46 tissue

value: adult

value: Bradley Bernstein, Broad

value: ENCBS454HCI at ENCODE; https://www.encodeproject.org/ENCBS454HCI/


title: WT (2 mM glyphosate) vs. WT-rep1

description:
WT (2 mM glyphosate) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL22794

source_name: WT (2 mM glyphosate)

value: WT harvested during exponential growth phase, CGXII glyphosate, date of experiment:2015-07/2015-08

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2015-07/2015-08


title: WT (2 mM glyphosate) vs. WT-rep3

description:
WT (2 mM glyphosate) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL22794


title: Histone ChIP-seq from middle frontal area 46 (ENCLB495DYH)

description:
https://www.encodeproject.org/experiments/ENCSR817PGE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR817PGE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR572GRM
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB495DYH
size range: 200-600

value: middle frontal area 46

value: tissue

value: 90 or above year

value: female


title: WT (2 mM glyphosate) vs. WT-rep2

description:
WT (2 mM glyphosate) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL22794


title: Mint-ChIP-seq from naive B cell (ENCLB565OHQ)

description:
https://www.encodeproject.org/experiments/ENCSR232AXS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR232AXS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR056PPJ
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB565OHQ

source_name: Homo sapiens male adult (40 years) naive B primary cell

value: naive B cell

value: primary cell

value: 40 year

value: male

value: John Stamatoyannopoulos

value: ENCBS857XIR at ENCODE; https://www.encodeproject.org/ENCBS857XIR/

value: Derived from ENCODE donor ENCDO512FEI; https://www.encodeproject.org/ENCDO512FEI/


title: WT (250 µM bromoresveratol) vs. WT-rep2

description:
WT (250 µM bromoresveratol) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL22794

source_name: WT (250 µM bromores

value: wild type

value: WT harvested during exponential growth phase, CGXII bromoresveratol, date of experiment:2015-06

source_name: eratol)

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2015-06


title: Histone ChIP-seq from middle frontal area 46 (ENCLB203CJX)

description:
https://www.encodeproject.org/experiments/ENCSR622MUH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR622MUH
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR018KWK
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB203CJX
size range: 200-600

value: adult

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS641FUL at ENCODE; https://www.encodeproject.org/ENCBS641FUL/

value: Derived from ENCODE donor ENCDO197QVG; https://www.encodeproject.org/ENCDO197QVG/


title: WT (250 µM bromoresveratol) vs. WT-rep3

description:
WT (250 µM bromoresveratol) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL22794


title: WT (250 µM bromoresveratol) vs. WT-rep1

description:
WT (250 µM bromoresveratol) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL22794


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB705YJM)

description:
https://www.encodeproject.org/experiments/ENCSR425UPH/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 Mint-ChIP-seq on human naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR425UPH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR881SIP
encode release date: 2021-11-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB705YJM
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500

source_name: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T primary cell

tag: description

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: healthy

value: unknown

value: David Hafler

value: ENCBS135XFB at ENCODE; https://www.encodeproject.org/ENCBS135XFB/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: WT (100 µM bromoresveratol) vs. WT-rep1

description:
WT (100 µM bromoresveratol) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL22794

source_name: WT (100 µM bromores


title: WT (50 µM riboflavin) vs. WT-rep1

description:
WT (50 µM riboflavin) vs. WT-rep1
Biological replicate 1 of 2
original platform:
GPL15451

source_name: WT (50 µM ribofla

value: WT harvested during exponential growth phase, CGXII riboflavin, date of experiment:2007-09

source_name: in)

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2007-09


description:
WT (0.6 µM mitomycin C, harvest after 3 h) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL16988

source_name: WT (0.6 µM mitomycin C, har

value: wild type

value: WT harvested during exponential growth phase 3 h after addition of mitomycin C, CGXII glucose, date of experiment:2012-06/2012-08, GEO:GSE45907

source_name: est after 3 h)

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2012-06/2012-08, GEO:GSE45907


title: WT (100 µM bromoresveratol) vs. WT-rep3

description:
WT (100 µM bromoresveratol) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL22794

value: WT harvested during exponential growth phase, CGXII bromoresveratol, date of experiment:2015-06

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2015-06


title: Histone ChIP-seq from heart right ventricle (ENCLB795FAZ)

description:
https://www.encodeproject.org/experiments/ENCSR621ECQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR621ECQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR597PTH
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB795FAZ
size range: 200-600

source_name: Homo sapiens male adult (55 years) heart right ventricle tissue

value: heart right ventricle

value: tissue

value: 55 year

value: male

value: ischemic (EF 25% LVEDD 6.9; RV normal size, moderate dysfunction)

value: adult

value: Bradley Bernstein, Broad

value: Shin Lin

value: ENCBS377GPP at ENCODE; https://www.encodeproject.org/ENCBS377GPP/

value: Derived from ENCODE donor ENCDO439CAZ; https://www.encodeproject.org/ENCDO439CAZ/


title: Mint-ChIP-seq from naive B cell (ENCLB475JIA)

description:
https://www.encodeproject.org/experiments/ENCSR232AXS/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR232AXS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR056PPJ
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB475JIA

value: naive B cell

value: primary cell

value: 40 year

value: John Stamatoyannopoulos

value: ENCBS857XIR at ENCODE; https://www.encodeproject.org/ENCBS857XIR/

value: Derived from ENCODE donor ENCDO512FEI; https://www.encodeproject.org/ENCDO512FEI/


title: WT (Fe2S, w/o (NH4)2SO4) vs. WT-rep3

description:
WT (Fe2S, w/o (NH4)2SO4) vs. WT-rep3
Biological replicate 3 of 4
original platform:
GPL22792

source_name: WT (Fe2S, w/o (NH4)2SO4)

value: wild type

value: WT harvested during exponential growth phase, CGXII glucose, Fe2S, w/o (NH4)2SO4, date of experiment:2014-04

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2014-04


title: WT (100 µM bromoresveratol) vs. WT-rep2

description:
WT (100 µM bromoresveratol) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL22794

value: WT harvested during exponential growth phase, CGXII bromoresveratol, date of experiment:2015-06

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2015-06


title: Histone ChIP-seq from middle frontal area 46 (ENCLB244UIW)

description:
https://www.encodeproject.org/experiments/ENCSR817PGE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR817PGE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR572GRM
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB244UIW
size range: 200-600

value: middle frontal area 46

value: tissue

value: 90 or above year

value: female

value: Rush University

value: ENCBS454HCI at ENCODE; https://www.encodeproject.org/ENCBS454HCI/

value: Derived from ENCODE donor ENCDO470GFA; https://www.encodeproject.org/ENCDO470GFA/


title: Histone ChIP-seq from right lobe of liver (ENCLB995EMI)

description:
https://www.encodeproject.org/experiments/ENCSR423SEX/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR423SEX
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR683VJG
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB995EMI
size range: 200-600

source_name: Homo sapiens female child (16 years) right lobe of liver tissue

value: right lobe of liver

value: 16 year

value: DM:no; HTN:no; CAD:no

value: child

value: Bradley Bernstein, Broad

value: Shin Lin

value: ENCBS374JJR at ENCODE; https://www.encodeproject.org/ENCBS374JJR/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: Histone ChIP-seq from right lobe of liver (ENCLB135BMZ)

description:
https://www.encodeproject.org/experiments/ENCSR423SEX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR423SEX
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR683VJG
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB135BMZ
size range: 200-600


title: Histone ChIP-seq from heart right ventricle (ENCLB368SNB)

description:
https://www.encodeproject.org/experiments/ENCSR621ECQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR621ECQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR597PTH
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB368SNB
size range: 200-600

value: heart right ventricle

value: 55 year

value: male

value: ischemic (EF 25% LVEDD 6.9; RV normal size, moderate dysfunction)

value: adult

value: ENCBS377GPP at ENCODE; https://www.encodeproject.org/ENCBS377GPP/

value: Derived from ENCODE donor ENCDO439CAZ; https://www.encodeproject.org/ENCDO439CAZ/


title: WT (50 µM riboflavin) vs. WT-rep2

description:
WT (50 µM riboflavin) vs. WT-rep2
Biological replicate 2 of 2
original platform:
GPL15451

value: wild type

value: WT harvested during exponential growth phase, CGXII riboflavin, date of experiment:2007-09

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2007-09


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB950EOE)

description:
https://www.encodeproject.org/experiments/ENCSR231XJT/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq of CD8-positive naive resting alpha-beta T cell male adult (30 years)
experiment encode accession: ENCSR231XJT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR761HQT
encode release date: 2021-11-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB950EOE
fragmentation methods: none

source_name: Homo sapiens male adult (30 years) CD8-positive naive resting alpha-beta T primary cell

value: primary cell

value: 30 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS845PJM at ENCODE; https://www.encodeproject.org/ENCBS845PJM/

value: Derived from ENCODE donor ENCDO166AGR; https://www.encodeproject.org/ENCDO166AGR/


title: WT (Fe2S, w/o (NH4)2SO4) vs. WT-rep4

description:
WT (Fe2S, w/o (NH4)2SO4) vs. WT-rep4
Biological replicate 4 of 4
original platform:
GPL22792

value: WT harvested during exponential growth phase, CGXII glucose, Fe2S, w/o (NH4)2SO4, date of experiment:2014-04

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2014-04


title: WT (3 mM Na2S) vs. WT-rep3

description:
WT (3 mM Na2S) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL16988

source_name: WT (3 mM Na2S)

value: WT harvested during exponential growth phase, CGXII Na2S, date of experiment:2012-10

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2012-10


title: WT (Fe2S, w/o (NH4)2SO4) vs. WT-rep2

description:
WT (Fe2S, w/o (NH4)2SO4) vs. WT-rep2
Biological replicate 2 of 4
original platform:
GPL22792

source_name: WT


title: WT (Fe2S, w/o (NH4)2SO4) vs. WT-rep1

description:
WT (Fe2S, w/o (NH4)2SO4) vs. WT-rep1
Biological replicate 1 of 4
original platform:
GPL22792


title: WT (3 mM Na2S) vs. WT-rep2

description:
WT (3 mM Na2S) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL16988


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB799YQH)

description:
https://www.encodeproject.org/experiments/ENCSR231COZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR231COZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR173UJQ
encode release date: 2022-04-29
lab: Bradley Bernstein, Broad
library encode accession: ENCLB799YQH

source_name: Homo sapiens male adult (51 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: 51 year

value: male

value: Bradley Bernstein, Broad

value: Charles Lee

value: ENCBS409NZS at ENCODE; https://www.encodeproject.org/ENCBS409NZS/

value: Derived from ENCODE donor ENCDO346BRO; https://www.encodeproject.org/ENCDO346BRO/


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB509QWJ)

description:
https://www.encodeproject.org/experiments/ENCSR231COZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR231COZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR173UJQ
encode release date: 2022-04-29
lab: Bradley Bernstein, Broad
library encode accession: ENCLB509QWJ

value: primary cell

value: adult


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB381HVQ)

description:
https://www.encodeproject.org/experiments/ENCSR231XJT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq of CD8-positive naive resting alpha-beta T cell male adult (30 years)
experiment encode accession: ENCSR231XJT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR761HQT
encode release date: 2021-11-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB381HVQ
fragmentation methods: none

value: 30 year

value: Yijun Ruan, JAX


title: TF ChIP-seq from brain (ENCLB702QTA)

description:
https://www.encodeproject.org/experiments/ENCSR423MQG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR423MQG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR076IYM
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB702QTA
size range: 200-600

source_name: Homo sapiens male adult (53 years) brain organoid

value: CTCF

value: brain

value: organoid

value: brain organoids created by Arlotta lab using new protocol to create more reliable organoids.

value: 53 year

value: Paola Arlotta

value: ENCBS858UKR at ENCODE; https://www.encodeproject.org/ENCBS858UKR/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB663UZV)

description:
https://www.encodeproject.org/experiments/ENCSR425UPH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 Mint-ChIP-seq on human naive thymus-derived CD8-positive, alpha-beta T cell
experiment encode accession: ENCSR425UPH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR881SIP
encode release date: 2021-11-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB663UZV
fragmentation methods: none
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500

value: supplied by Hafler lab as part of Encode4 project starting July2017

value: not collected

value: healthy

value: unknown

value: David Hafler

value: ENCBS135XFB at ENCODE; https://www.encodeproject.org/ENCBS135XFB/

value: Derived from ENCODE donor ENCDO836ICQ; https://www.encodeproject.org/ENCDO836ICQ/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB792HVB)

description:
https://www.encodeproject.org/experiments/ENCSR230LWW/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR230LWW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR569JUB
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB792HVB

source_name: Homo sapiens male adult (36 years) naive thymus-derived CD8-positive, alpha-beta T primary cell

value: primary cell

value: 36 year

value: male

value: adult

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: ENCBS793QJH at ENCODE; https://www.encodeproject.org/ENCBS793QJH/

value: Derived from ENCODE donor ENCDO424UPQ; https://www.encodeproject.org/ENCDO424UPQ/


title: WT (3 mM Na2S) vs. WT-rep1

description:
WT (3 mM Na2S) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL16988

value: wild type

value: WT harvested during exponential growth phase, CGXII Na2S, date of experiment:2012-10

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2012-10


title: WT (0.3 mM Na2S) vs. WT-rep4

description:
WT (0.3 mM Na2S) vs. WT-rep4
Biological replicate 4 of 4
original platform:
GPL22792

source_name: WT (0.3 mM Na2S)

value: WT harvested during exponential growth phase, CGXII Na2S, date of experiment:2013-09

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2013-09


title: WT (0.3 mM Na2S) vs. WT-rep1

description:
WT (0.3 mM Na2S) vs. WT-rep1
Biological replicate 1 of 4
original platform:
GPL22792


title: WT (0.3 mM Na2S) vs. WT-rep3

description:
WT (0.3 mM Na2S) vs. WT-rep3
Biological replicate 3 of 4
original platform:
GPL22792


title: WT (5 mM KNO3) vs. WT-rep3

description:
WT (5 mM KNO3) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL15451

source_name: WT (5 mM KNO3)

value: WT harvested during exponential growth phase, CGXII KNO3, date of experiment:2009-08/2010-04

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2009-08/2010-04


title: WT (5 mM KNO3) vs. WT-rep1

description:
WT (5 mM KNO3) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL15451


title: WT (0.3 mM Na2S) vs. WT-rep2

description:
WT (0.3 mM Na2S) vs. WT-rep2
Biological replicate 2 of 4
original platform:
GPL22792


title: TF ChIP-seq from middle frontal area 46 (ENCLB666GUW)

description:
https://www.encodeproject.org/experiments/ENCSR619WGF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR619WGF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR993YSN
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB666GUW
size range: 200-600

source_name: Homo sapiens female adult (89 years) with Alzheimer's disease; middle frontal area 46 tissue

value: CTCF

value: middle frontal area 46

value: tissue

value: 89 year

value: female

value: Rush University

value: ENCBS748EGF at ENCODE; https://www.encodeproject.org/ENCBS748EGF/

value: Derived from ENCODE donor ENCDO843TIL; https://www.encodeproject.org/ENCDO843TIL/


title: Histone ChIP-seq from heart left ventricle (ENCLB441DYO)

description:
https://www.encodeproject.org/experiments/ENCSR229CNU/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 ChIP-seq on heart left ventricle tissue male adult (55 years).
experiment encode accession: ENCSR229CNU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR979YKY
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB441DYO
size range: 200-600

source_name: Homo sapiens male adult (55 years) heart left ventricle tissue

value: heart left ventricle

value: male

value: adult

value: 55 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: ischemic (EF 25% LVEDD 6.9; RV normal size, moderate dysfunction)

value: ENCBS471DJO at ENCODE; https://www.encodeproject.org/ENCBS471DJO/

value: Derived from ENCODE donor ENCDO439CAZ; https://www.encodeproject.org/ENCDO439CAZ/


title: Histone ChIP-seq from heart left ventricle (ENCLB956ICH)

description:
https://www.encodeproject.org/experiments/ENCSR817JNE/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me1 ChIP-seq on heart left ventricle tissue male adult (66 years).
experiment encode accession: ENCSR817JNE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR061EXX
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB956ICH
size range: 200-600

source_name: Homo sapiens male adult (66 years) heart left ventricle tissue

value: ischemic (EF 29% LVEDD 5.4; RV normal size, mild dysfunction)

value: 66 year

value: ENCBS966SZA at ENCODE; https://www.encodeproject.org/ENCBS966SZA/

value: Derived from ENCODE donor ENCDO926KEV; https://www.encodeproject.org/ENCDO926KEV/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB632MWM)

description:
https://www.encodeproject.org/experiments/ENCSR619TOU/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR619TOU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR018KWK
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB632MWM
size range: 200-600

source_name: Homo sapiens male adult (90 or above years) with Alzheimer's disease; middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: 90 or above year

value: ENCBS641FUL at ENCODE; https://www.encodeproject.org/ENCBS641FUL/

value: Derived from ENCODE donor ENCDO197QVG; https://www.encodeproject.org/ENCDO197QVG/


title: TF ChIP-seq from middle frontal area 46 (ENCLB463NYM)

description:
https://www.encodeproject.org/experiments/ENCSR619WGF/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR619WGF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR993YSN
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB463NYM
size range: 200-600

value: CTCF

value: 89 year

value: female

value: Rush University

value: ENCBS748EGF at ENCODE; https://www.encodeproject.org/ENCBS748EGF/

value: Derived from ENCODE donor ENCDO843TIL; https://www.encodeproject.org/ENCDO843TIL/


title: Histone ChIP-seq from heart left ventricle (ENCLB492ZKE)

description:
https://www.encodeproject.org/experiments/ENCSR229CNU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on heart left ventricle tissue male adult (55 years).
experiment encode accession: ENCSR229CNU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR979YKY
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB492ZKE
size range: 200-600

value: heart left ventricle

value: male

value: adult

value: 55 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: ischemic (EF 25% LVEDD 6.9; RV normal size, moderate dysfunction)

value: ENCBS471DJO at ENCODE; https://www.encodeproject.org/ENCBS471DJO/


title: WT (5 mM KNO3) vs. WT-rep2

description:
WT (5 mM KNO3) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL15451

value: wild type

value: WT harvested during exponential growth phase, CGXII KNO3, date of experiment:2009-08/2010-04

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2009-08/2010-04


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB793IAR)

description:
https://www.encodeproject.org/experiments/ENCSR230LWW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR230LWW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR569JUB
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB793IAR

value: primary cell

value: 36 year

value: John Stamatoyannopoulos

value: ENCBS793QJH at ENCODE; https://www.encodeproject.org/ENCBS793QJH/

value: Derived from ENCODE donor ENCDO424UPQ; https://www.encodeproject.org/ENCDO424UPQ/


title: Control Mint-ChIP-seq from stimulated activated naive CD8-positive, alpha-beta T cell (ENCLB617LUJ)

description:
https://www.encodeproject.org/experiments/ENCSR414ZUR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR414ZUR
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB617LUJ

source_name: Homo sapiens male adult (36 years) stimulated activated naive CD8-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:72; duration_units:hour;

value: ENCBS253TXN at ENCODE; https://www.encodeproject.org/ENCBS253TXN/


title: WT (10 mM KNO2) vs. WT-rep2

description:
WT (10 mM KNO2) vs. WT-rep2
Biological replicate 2 of 2
original platform:
GPL15451

source_name: WT (10 mM KNO2)

value: WT harvested during exponential growth phase, CGXII KNO2, date of experiment:2012-01

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2012-01


title: Control Mint-ChIP-seq from stimulated activated naive CD8-positive, alpha-beta T cell (ENCLB621VBK)

description:
https://www.encodeproject.org/experiments/ENCSR414ZUR/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR414ZUR
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB621VBK

value: male

value: adult


title: WT (10 mM KNO2) vs. WT-rep1

description:
WT (10 mM KNO2) vs. WT-rep1
Biological replicate 1 of 2
original platform:
GPL15451