title: Histone ChIP-seq from heart left ventricle (ENCLB889KKA)

description:
https://www.encodeproject.org/experiments/ENCSR817JNE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on heart left ventricle tissue male adult (66 years).
experiment encode accession: ENCSR817JNE
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR061EXX
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB889KKA
size range: 200-600

value: heart left ventricle

value: tissue

value: ischemic (EF 29% LVEDD 5.4; RV normal size, mild dysfunction)

value: 66 year

value: Bradley Bernstein, Broad

value: Shin Lin

value: ENCBS966SZA at ENCODE; https://www.encodeproject.org/ENCBS966SZA/

value: Derived from ENCODE donor ENCDO926KEV; https://www.encodeproject.org/ENCDO926KEV/


title: WT (0.2 mM resveratol) vs. WT-rep2

status: Public on Jul 22 2022

type: RNA

city: Juelich

first: Tino

last: Polen

state: NRW

address: Wilhelm-Johnen-Str 1

department: IBG-1: Biotechnology

country: Germany

institute: Forschungszentrum Jülich GmbH

description:
WT (0.2 mM resveratol) vs. WT-rep2
Biological replicate 2 of 2
original platform:
GPL22561

hyb_protocol: Gene expression changes were compared using self-made PCR-product based DNA microarrays (Lange et al. 2003), custom-made DNA microarrays with 70-mer oligonucleotides obtained from Operon Biotechnologies (Cologne, Germany) or custom-made 4x44K 60mer DNA microarrays from Agilent Technologies (Waldbronn, Germany). Hybridization of mixtures of Cy3- and Cy5-labelled cDNA on the arrays and washing of the arrays were performed as described by Frunzke et al. 2008, Polen & Wendisch 2003, and Vogt et al. 2014.

scan_protocol: The fluorescence of DNA microarrays was determined at 532 nm (Cy2-dUTP) and 635 nm (Cy5-dUTP) at 5 or 10 µm resolution with a GenePix 4000B laser scanner and GenePix Pro Software (Molecular Devices, Sunnyvale, USA).

data_processing:
The raw results were saved as GPR-files and processed and normalized using the BioConductor R packages limma and marray (http://www.bioconductor.org). For further analysis, loess-normalized data were saved in the in-house DNA microarray database (Polen et al. 2004) including detailed information about each experiment following MIAME standards (Brazma et al. 2009). Normalized ratios of medians reflecting the relative mRNA level were filtered for a signal-to-noise ratio ((F635Median/B635Median) or (F532Median/B532Median)) higher than 3. Statistical analysis for calculation of p-values was performed with a paired Student´s t-test comparing relative RNA levels for a gene to the relative RNA levels of all other genes in the replicates.
All listed GAL files are included in a tar archive on the SERIES record. The 'ID' field of the GAL files includes the Biomax IDs. A supplementary file provides the CG IDs for the Biomax IDs.

molecule: total RNA

organism: Corynebacterium glutamicum

source_name: WT (0.2 mM res

label_protocol: Equal amounts of RNA (15-30 µg) were used for random hexamer primed synthesis of fluorescently labelled cDNA using the nucleotide analogous Cy3-dUTP or Cy5-dUTP (GE Healthcare, Eindhoven, Netherlands).

extract_protocol: Total RNA was isolated using the RNeasy Kit (Qiagen, Hilden, Germany) or as described by Wendisch et al. 2001.

tag: genotype

value: wild type

tag: condition

value: WT harvest during exponential growth phase, CGXII resveratol, date of experiment:2015-01

source_name: eratol)

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2015-01


title: WT (3 mM KNO2) vs. WT-rep1

description:
WT (3 mM KNO2) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL15451

source_name: WT (3 mM KNO2)

value: WT harvested during exponential growth phase, CGXII KNO2, date of experiment:2009-08/2010-04

source_name: WT

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2009-08/2010-04


title: WT (3 mM KNO2) vs. WT-rep2

description:
WT (3 mM KNO2) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL15451


title: Histone ChIP-seq from heart right ventricle (ENCLB812EDK)

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR221EIS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR221EIS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR597PTH
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB812EDK
size range: 200-600

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens male adult (55 years) heart right ventricle tissue

tag: antibody

value: heart right ventricle

tag: biosample encode accession

tag: age

value: 55 year

tag: Sex

value: male

tag: health state

value: ischemic (EF 25% LVEDD 6.9; RV normal size, moderate dysfunction)

tag: dev stage

value: adult

tag: lab

tag: source

tag: link

value: ENCBS377GPP at ENCODE; https://www.encodeproject.org/ENCBS377GPP/

value: Derived from ENCODE donor ENCDO439CAZ; https://www.encodeproject.org/ENCDO439CAZ/


title: Histone ChIP-seq from heart right ventricle (ENCLB473JPA)

description:
https://www.encodeproject.org/experiments/ENCSR221EIS/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR221EIS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR597PTH
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB473JPA
size range: 200-600

value: tissue


title: WT (3 mM KNO2) vs. WT-rep3

description:
WT (3 mM KNO2) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL15451


title: Histone ChIP-seq from lower lobe of right lung (ENCLB713NCD)

description:
https://www.encodeproject.org/experiments/ENCSR816HJO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR816HJO
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR454FJM
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB713NCD
size range: 200-600

source_name: Homo sapiens male adult (60 years) lower lobe of right lung tissue

value: lower lobe of right lung

value: 60 year

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: Bradley Bernstein, Broad

value: ENCBS706XDW at ENCODE; https://www.encodeproject.org/ENCBS706XDW/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB332PKG)

description:
https://www.encodeproject.org/experiments/ENCSR414RIE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR414RIE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR212ZBB
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB332PKG

source_name: Homo sapiens male adult (50 years) naive thymus-derived CD4-positive, alpha-beta T primary cell

value: primary cell

value: 50 year

value: John Stamatoyannopoulos

value: ENCBS552ZBM at ENCODE; https://www.encodeproject.org/ENCBS552ZBM/

value: Derived from ENCODE donor ENCDO641WTL; https://www.encodeproject.org/ENCDO641WTL/


title: WT (0.2 mM resveratol) vs. WT-rep1

description:
WT (0.2 mM resveratol) vs. WT-rep1
Biological replicate 1 of 2
original platform:
GPL22561

value: wild type

value: WT harvest during exponential growth phase, CGXII resveratol, date of experiment:2015-01

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2015-01


title: WT (5 mM nitrate) vs. WT-rep1

description:
WT (5 mM nitrate) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL15451

source_name: WT (5 mM nitrate)

value: WT harvest during exponential growth phase, CGXII nitrate, date of experiment:2009-11

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2009-11


title: WT (5 mM nitrate) vs. WT-rep2

description:
WT (5 mM nitrate) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL15451


title: Histone ChIP-seq from lower lobe of right lung (ENCLB504IHM)

description:
https://www.encodeproject.org/experiments/ENCSR816HJO/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR816HJO
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR454FJM
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB504IHM
size range: 200-600

value: tissue

value: male

value: adult

value: Shin Lin


title: Control Mint-ChIP-seq from activated T-cell (ENCLB006ZWI)

description:
https://www.encodeproject.org/experiments/ENCSR619MIA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR619MIA
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-04-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB006ZWI

source_name: Homo sapiens male adult (43 years) activated T-cell primary cell treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours

value: activated T-cell

value: 43 year

value: Bradley Bernstein, Broad

tag: treatments

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:72; duration_units:hour; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:72; duration_units:hour;

value: ENCBS496KUK at ENCODE; https://www.encodeproject.org/ENCBS496KUK/

value: Derived from ENCODE donor ENCDO106CDP; https://www.encodeproject.org/ENCDO106CDP/


title: WT (5 mM nitrate) vs. WT-rep3

description:
WT (5 mM nitrate) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL15451


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB729ALS)

description:
https://www.encodeproject.org/experiments/ENCSR414RIE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR414RIE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR212ZBB
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB729ALS

value: primary cell

value: 50 year

value: John Stamatoyannopoulos

value: ENCBS552ZBM at ENCODE; https://www.encodeproject.org/ENCBS552ZBM/


title: Control Mint-ChIP-seq from activated T-cell (ENCLB609GQP)

description:
https://www.encodeproject.org/experiments/ENCSR619MIA/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR619MIA
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-04-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB609GQP


title: Histone ChIP-seq from middle frontal area 46 (ENCLB917TKE)

description:
https://www.encodeproject.org/experiments/ENCSR619TOU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR619TOU
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR018KWK
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB917TKE
size range: 200-600

source_name: Homo sapiens male adult (90 or above years) with Alzheimer's disease; middle frontal area 46 tissue

value: middle frontal area 46

value: 90 or above year

value: Rush University

value: ENCBS641FUL at ENCODE; https://www.encodeproject.org/ENCBS641FUL/

value: Derived from ENCODE donor ENCDO197QVG; https://www.encodeproject.org/ENCDO197QVG/


title: WT (3 mM nitrite) vs. WT-rep2

description:
WT (3 mM nitrite) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL15451

source_name: WT (3 mM nitrite)

value: wild type

value: WT harvest during exponential growth phase, CGXII nitrite, date of experiment:2009-11

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2009-11


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB437SKP)

description:
https://www.encodeproject.org/experiments/ENCSR617NSY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR617NSY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR173UJQ
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB437SKP

source_name: Homo sapiens male adult (51 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: 51 year

value: male

value: adult

value: Charles Lee

value: ENCBS409NZS at ENCODE; https://www.encodeproject.org/ENCBS409NZS/

value: Derived from ENCODE donor ENCDO346BRO; https://www.encodeproject.org/ENCDO346BRO/


title: WT (harvest in ethanol) vs. WT-rep1

description:
WT (harvest in ethanol) vs. WT-rep1
Biological replicate 1 of 2
original platform:
GPL15451

source_name: WT (har

value: WT harvest during exponential growth phase in ice-cold ethanol, CGXII glucose, date of experiment:2011-08

source_name: est in ethanol)

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2011-08, GEO:GSE49936


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB963TAX)

description:
https://www.encodeproject.org/experiments/ENCSR617NSY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR617NSY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR173UJQ
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB963TAX

value: primary cell

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB205DVL)

description:
https://www.encodeproject.org/experiments/ENCSR217KVU/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR217KVU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR890AQB
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB205DVL

source_name: Homo sapiens male adult (30 years) CD8-positive, alpha-beta memory T primary cell

value: CD8-positive, alpha-beta memory T cell

value: 30 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS122NLR at ENCODE; https://www.encodeproject.org/ENCBS122NLR/

value: Derived from ENCODE donor ENCDO166AGR; https://www.encodeproject.org/ENCDO166AGR/


title: WT (3 mM nitrite) vs. WT-rep1

description:
WT (3 mM nitrite) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL15451

value: wild type

value: WT harvest during exponential growth phase, CGXII nitrite, date of experiment:2009-11

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2009-11


title: WT (3 mM nitrite) vs. WT-rep3

description:
WT (3 mM nitrite) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL15451


title: WT (harvest in ethanol) vs. WT-rep2

description:
WT (harvest in ethanol) vs. WT-rep2
Biological replicate 2 of 2
original platform:
GPL15451


description:
WT (111 mM glucose, 100 mM methanol) vs. WT (111 mM glucose)-rep3
Biological replicate 3 of 3
original platform:
GPL15451

source_name: WT (111 mM glucose, 100 mM methanol)

value: WT harvest during exponential growth phase, CGXII glucose methanol, date of experiment:2011-08, GEO:GSE49936

source_name: WT (111 mM glucose)


title: Mint-ChIP-seq from naive B cell (ENCLB881PWF)

description:
https://www.encodeproject.org/experiments/ENCSR414JJE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR414JJE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR575ZCX
encode release date: 2022-07-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB881PWF

source_name: Homo sapiens female adult (39 years) naive B primary cell

value: naive B cell

value: 39 year

value: female

value: adult

value: John Stamatoyannopoulos

value: ENCBS531INH at ENCODE; https://www.encodeproject.org/ENCBS531INH/

value: Derived from ENCODE donor ENCDO352FHC; https://www.encodeproject.org/ENCDO352FHC/


description:
WT (w/o glucose, 100 mM methanol) vs. WT (w/o glucose)-rep2
Biological replicate 2 of 2
original platform:
GPL15451

source_name: WT (w/o glucose, 100 mM methanol)

value: WT harvest during exponential growth phase, CGXII methanol, date of experiment:2011-08, GEO:GSE49936

source_name: WT (w/o glucose)

value: WT harvest during exponential growth phase, CGXII w/o glucose, date of experiment:2011-08, GEO:GSE49936


title: Mint-ChIP-seq from naive B cell (ENCLB315YBU)

description:
https://www.encodeproject.org/experiments/ENCSR414JJE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR414JJE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR575ZCX
encode release date: 2022-07-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB315YBU

value: primary cell

value: Bradley Bernstein, Broad


description:
WT (w/o glucose, 100 mM methanol) vs. WT (w/o glucose)-rep1
Biological replicate 1 of 2
original platform:
GPL15451


title: Mint-ChIP-seq from IgD-negative memory B cell (ENCLB931QSH)

description:
https://www.encodeproject.org/experiments/ENCSR617NOD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR617NOD
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR737MLQ
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB931QSH

source_name: Homo sapiens IgD-negative memory B primary cell, preserved by cryopreservation

value: IgD-negative memory B cell

tag: description

value: B memory CD3- CD14- CD19+ CD27+ IgD-

value: not collected

value: healthy

value: unknown

value: David Hafler

value: ENCBS793OUV at ENCODE; https://www.encodeproject.org/ENCBS793OUV/

value: Derived from ENCODE donor ENCDO976NED; https://www.encodeproject.org/ENCDO976NED/


title: Mint-ChIP-seq from IgD-negative memory B cell (ENCLB386TCN)

description:
https://www.encodeproject.org/experiments/ENCSR617NOD/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR617NOD
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR737MLQ
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB386TCN


title: Mint-ChIP-seq from CD8-positive, alpha-beta memory T cell (ENCLB407RQT)

description:
https://www.encodeproject.org/experiments/ENCSR217KVU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR217KVU
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR890AQB
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB407RQT

value: CD8-positive, alpha-beta memory T cell

value: male

value: 30 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS122NLR at ENCODE; https://www.encodeproject.org/ENCBS122NLR/

value: Derived from ENCODE donor ENCDO166AGR; https://www.encodeproject.org/ENCDO166AGR/


description:
WT (111 mM glucose, 100 mM methanol) vs. WT (111 mM glucose)-rep2
Biological replicate 2 of 3
original platform:
GPL15451

value: wild type

value: WT harvest during exponential growth phase, CGXII glucose methanol, date of experiment:2011-08, GEO:GSE49936

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2011-08, GEO:GSE49936


title: WT (50 mM serine) vs. WT-rep2

description:
WT (50 mM serine) vs. WT-rep2
Biological replicate 2 of 2
GAL file:
CG_GAL_PCR_Layout_05.gal

source_name: WT (50 mM serine)

value: WT harvest during exponential growth phase, CGXII serine, date of experiment:2005-10/2006-03

source_name: WT

value: WT harvest during exponential growth phase, CGXII glucose#, date of experiment:2005-10/2006-03


title: Mint-ChIP-seq from effector memory CD8-positive, alpha-beta T cell (ENCLB566ZIO)

description:
https://www.encodeproject.org/experiments/ENCSR215JNV/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR215JNV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR809CJF
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB566ZIO

source_name: Homo sapiens male adult (33 years) effector memory CD8-positive, alpha-beta T primary cell

value: primary cell

value: 33 year

value: adult

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: ENCBS509OFL at ENCODE; https://www.encodeproject.org/ENCBS509OFL/

value: Derived from ENCODE donor ENCDO830ROH; https://www.encodeproject.org/ENCDO830ROH/


title: Mint-ChIP-seq from effector memory CD8-positive, alpha-beta T cell (ENCLB826SRR)

description:
https://www.encodeproject.org/experiments/ENCSR215JNV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR215JNV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR809CJF
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB826SRR

value: male


title: Mint-ChIP-seq from HCT116 (ENCLB985WVL)

description:
https://www.encodeproject.org/experiments/ENCSR815PYO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR815PYO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR853IEG
encode release date: 2022-06-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB985WVL

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens MED14

tag: line

value: cell line

value: 48 year

value: colorectal carcinoma

value: Erez Aiden

value: ENCBS828BDT at ENCODE; https://www.encodeproject.org/ENCBS828BDT/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: Mint-ChIP-seq from HCT116 (ENCLB662YWW)

description:
https://www.encodeproject.org/experiments/ENCSR815PYO/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR815PYO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR853IEG
encode release date: 2022-06-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB662YWW


title: WT (50 mM sodium oleat) vs. WT-rep2

description:
WT (50 mM sodium oleat) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL22792

source_name: WT (50 mM sodium oleat)

value: wild type

value: WT harvest during exponential growth phase, CGXII sodium oleate, date of experiment:2013-05

value: WT harvest during early exponential growth phase, CGXII glucose, date of experiment:2013-04


description:
WT (111 mM glucose, 100 mM methanol) vs. WT (111 mM glucose)-rep1
Biological replicate 1 of 3
original platform:
GPL15451

value: WT harvest during exponential growth phase, CGXII glucose methanol, date of experiment:2011-08, GEO:GSE49936

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2011-08, GEO:GSE49936


title: WT (50 mM serine) vs. WT-rep1

description:
WT (50 mM serine) vs. WT-rep1
Biological replicate 1 of 2
GAL file:
CG_GAL_PCR_Layout_05.gal

value: WT harvest during exponential growth phase, CGXII serine, date of experiment:2005-10/2006-03

value: WT harvest during exponential growth phase, CGXII glucose#, date of experiment:2005-10/2006-03


title: WT (50 mM sodium oleat) vs. WT-rep3

description:
WT (50 mM sodium oleat) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL22792

value: WT harvest during exponential growth phase, CGXII sodium oleate, date of experiment:2013-06


title: WT (50 mM sodium oleat) vs. WT-rep1

description:
WT (50 mM sodium oleat) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL22792

value: WT harvest during exponential growth phase, CGXII sodium oleate, date of experiment:2013-04


title: Control Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB652IZO)

description:
https://www.encodeproject.org/experiments/ENCSR212ZBB/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR212ZBB
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-04-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB652IZO

source_name: Homo sapiens male adult (50 years) naive thymus-derived CD4-positive, alpha-beta T primary cell

value: primary cell

value: 50 year

value: adult

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: ENCBS552ZBM at ENCODE; https://www.encodeproject.org/ENCBS552ZBM/

value: Derived from ENCODE donor ENCDO641WTL; https://www.encodeproject.org/ENCDO641WTL/


title: Mint-ChIP-seq from effector memory CD8-positive, alpha-beta T cell (ENCLB677IEO)

description:
https://www.encodeproject.org/experiments/ENCSR210UDG/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR210UDG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR995LKY
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB677IEO

source_name: Homo sapiens male adult (36 years) effector memory CD8-positive, alpha-beta T primary cell

value: 36 year

value: male

value: ENCBS527GUI at ENCODE; https://www.encodeproject.org/ENCBS527GUI/

value: Derived from ENCODE donor ENCDO424UPQ; https://www.encodeproject.org/ENCDO424UPQ/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB892VPM)

description:
https://www.encodeproject.org/experiments/ENCSR814QIV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR814QIV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR572GRM
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB892VPM
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) with Alzheimer's disease; middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: 90 or above year

value: female

value: Rush University

value: ENCBS454HCI at ENCODE; https://www.encodeproject.org/ENCBS454HCI/

value: Derived from ENCODE donor ENCDO470GFA; https://www.encodeproject.org/ENCDO470GFA/


title: Mint-ChIP-seq from effector memory CD8-positive, alpha-beta T cell (ENCLB701NJJ)

description:
https://www.encodeproject.org/experiments/ENCSR210UDG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR210UDG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR995LKY
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB701NJJ

value: primary cell


title: Mint-ChIP-seq from stimulated activated naive CD8-positive, alpha-beta T cell (ENCLB811QEA)

description:
https://www.encodeproject.org/experiments/ENCSR617DUK/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR617DUK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR457KLD
encode release date: 2022-04-29
lab: Bradley Bernstein, Broad
library encode accession: ENCLB811QEA

source_name: Homo sapiens male adult (33 years) stimulated activated naive CD8-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours

value: 33 year

value: adult

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:72; duration_units:hour;

value: ENCBS261THR at ENCODE; https://www.encodeproject.org/ENCBS261THR/

value: Derived from ENCODE donor ENCDO830ROH; https://www.encodeproject.org/ENCDO830ROH/


title: Mint-ChIP-seq from stimulated activated naive CD8-positive, alpha-beta T cell (ENCLB256KWJ)

description:
https://www.encodeproject.org/experiments/ENCSR617DUK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR617DUK
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR457KLD
encode release date: 2022-04-29
lab: Bradley Bernstein, Broad
library encode accession: ENCLB256KWJ

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos


description:
WT (100 mM formate, early stationary phase) vs. WT (early stationary phase)-rep1
Biological replicate 1 of 3
original platform:
GPL15451

value: wild type

value: WT harvest during early stationary growth phase, CGXII formate, date of experiment:2008-10/2010-02

source_name: WT (early stationary phase)

value: WT harvest during early stationary growth phase, CGXII glucose, date of experiment:2008-10/2010-02


description:
WT (100 mM formate, early stationary phase) vs. WT (early stationary phase)-rep3
Biological replicate 3 of 3
original platform:
GPL15451


description:
WT (100 mM formate, early stationary phase) vs. WT (early stationary phase)-rep2
Biological replicate 2 of 3
original platform:
GPL15451


title: Histone ChIP-seq from middle frontal area 46 (ENCLB781OOP)

description:
https://www.encodeproject.org/experiments/ENCSR814QIV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR814QIV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR572GRM
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB781OOP
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: ENCBS965OCN at ENCODE; https://www.encodeproject.org/ENCBS965OCN/


title: Control Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB630VSN)

description:
https://www.encodeproject.org/experiments/ENCSR212ZBB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR212ZBB
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-04-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB630VSN

value: 50 year

value: male

value: ENCBS552ZBM at ENCODE; https://www.encodeproject.org/ENCBS552ZBM/

value: Derived from ENCODE donor ENCDO641WTL; https://www.encodeproject.org/ENCDO641WTL/


title: WT (50 mM oxoadipate) vs. WT-rep3

description:
WT (50 mM oxoadipate) vs. WT-rep3
Biological replicate 3 of 3
original platform:
GPL15451

source_name: WT (50 mM oxoadipate)

value: WT harvest during exponential growth phase, CGXII oxoadipate, date of experiment:2009-11

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2009-11


title: WT (50 mM oxoadipate) vs. WT-rep2

description:
WT (50 mM oxoadipate) vs. WT-rep2
Biological replicate 2 of 3
original platform:
GPL15451


title: WT (50 mM oxoadipate) vs. WT-rep1

description:
WT (50 mM oxoadipate) vs. WT-rep1
Biological replicate 1 of 3
original platform:
GPL15451


title: Histone ChIP-seq from middle frontal area 46 (ENCLB128RTV)

description:
https://www.encodeproject.org/experiments/ENCSR814QIV/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR814QIV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR572GRM
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB128RTV
size range: 200-600

value: 90 or above year

value: female

value: adult

value: Rush University

value: Derived from ENCODE donor ENCDO470GFA; https://www.encodeproject.org/ENCDO470GFA/


title: Mint-ChIP-seq from activated T-cell (ENCLB281JOK)

description:
https://www.encodeproject.org/experiments/ENCSR209EXZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR209EXZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR619MIA
encode release date: 2022-04-29
lab: Bradley Bernstein, Broad
library encode accession: ENCLB281JOK

source_name: Homo sapiens male adult (43 years) activated T-cell primary cell treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours

value: activated T-cell

value: primary cell

value: 43 year

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:72; duration_units:hour; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:72; duration_units:hour;

value: ENCBS496KUK at ENCODE; https://www.encodeproject.org/ENCBS496KUK/

value: Derived from ENCODE donor ENCDO106CDP; https://www.encodeproject.org/ENCDO106CDP/


title: Control Mint-ChIP-seq from HCT116 (ENCLB745CER)

description:
https://www.encodeproject.org/experiments/ENCSR614CRT/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR614CRT
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-04-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB745CER

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens BRD4 treated with 1uM 5-Phenyl-1H-indole-3-acetic acid for 6 hours

value: cell line

value: 48 year

value: male

value: colorectal carcinoma

value: Erez Aiden

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS087RNX at ENCODE; https://www.encodeproject.org/ENCBS087RNX/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: Mint-ChIP-seq from activated T-cell (ENCLB388GTB)

description:
https://www.encodeproject.org/experiments/ENCSR209EXZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR209EXZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR619MIA
encode release date: 2022-04-29
lab: Bradley Bernstein, Broad
library encode accession: ENCLB388GTB

value: adult


title: WT (50 mM adipate) vs. WT-rep4

description:
WT (50 mM adipate) vs. WT-rep4
Biological replicate 4 of 4
original platform:
GPL15451

source_name: WT (50 mM adipate)

value: wild type

value: WT harvest during exponential growth phase, CGXII adipate, date of experiment:2008-12/2009-02

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2008-12/2009-02


title: WT (50 mM adipate) vs. WT-rep3

description:
WT (50 mM adipate) vs. WT-rep3
Biological replicate 3 of 4
original platform:
GPL15451


title: Control Mint-ChIP-seq from HCT116 (ENCLB646DYF)

description:
https://www.encodeproject.org/experiments/ENCSR614CRT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR614CRT
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-04-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB646DYF

value: Bradley Bernstein, Broad


title: WT (50 mM adipate) vs. WT-rep1

description:
WT (50 mM adipate) vs. WT-rep1
Biological replicate 1 of 4
original platform:
GPL15451


description:
WT (100 mM formate, early exponential phase) vs. WT (early exponential phase)-rep2
Biological replicate 2 of 3
original platform:
GPL15451

value: WT harvest during early exponential growth phase, CGXII formate, date of experiment:2010-01/2010-02

source_name: WT (early exponential phase)

value: WT harvest during early exponential growth phase, CGXII glucose, date of experiment:2010-01/2010-02


description:
WT (50 mM sodium-citrate) vs. WT (50 mM glucose)-rep2
Biological replicate 2 of 2
original platform:
GPL15451

source_name: WT (50 mM sodium-citrate)

value: WT harvest during exponential growth phase, CGXII sodium-citrate, date of experiment:2002-11

source_name: WT (50 mM glucose)

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2002-11


title: WT (50 mM adipate) vs. WT-rep2

description:
WT (50 mM adipate) vs. WT-rep2
Biological replicate 2 of 4
original platform:
GPL15451

source_name: WT


description:
WT (100 mM formate, early exponential phase) vs. WT (early exponential phase)-rep1
Biological replicate 1 of 3
original platform:
GPL15451


description:
WT (100 mM formate, early exponential phase) vs. WT (early exponential phase)-rep3
Biological replicate 3 of 3
original platform:
GPL15451


title: Histone ChIP-seq from middle frontal area 46 (ENCLB255EYX)

description:
https://www.encodeproject.org/experiments/ENCSR814QIV/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR814QIV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR572GRM
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB255EYX
size range: 200-600

value: middle frontal area 46

value: tissue

value: 90 or above year

value: female

value: Rush University

value: ENCBS454HCI at ENCODE; https://www.encodeproject.org/ENCBS454HCI/

value: Derived from ENCODE donor ENCDO470GFA; https://www.encodeproject.org/ENCDO470GFA/


title: Histone ChIP-seq from right lobe of liver (ENCLB797NMS)

description:
https://www.encodeproject.org/experiments/ENCSR611CHC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR611CHC
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR683VJG
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB797NMS
size range: 200-600

source_name: Homo sapiens female child (16 years) right lobe of liver tissue

value: right lobe of liver

value: 16 year

value: DM:no; HTN:no; CAD:no

value: child

value: Shin Lin

value: ENCBS374JJR at ENCODE; https://www.encodeproject.org/ENCBS374JJR/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: Mint-ChIP-seq from effector memory CD8-positive, alpha-beta T cell (ENCLB447FLY)

description:
https://www.encodeproject.org/experiments/ENCSR412YYV/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR412YYV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR995LKY
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB447FLY

value: primary cell

value: 36 year

value: male

value: adult

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: ENCBS527GUI at ENCODE; https://www.encodeproject.org/ENCBS527GUI/

value: Derived from ENCODE donor ENCDO424UPQ; https://www.encodeproject.org/ENCDO424UPQ/


title: Histone ChIP-seq from heart left ventricle (ENCLB567BVI)

description:
https://www.encodeproject.org/experiments/ENCSR611SRO/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K9me3 ChIP-seq on heart left ventricle tissue male adult (66 years).
experiment encode accession: ENCSR611SRO
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR061EXX
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB567BVI
size range: 200-600

source_name: Homo sapiens male adult (66 years) heart left ventricle tissue

value: heart left ventricle

value: tissue

value: ischemic (EF 29% LVEDD 5.4; RV normal size, mild dysfunction)

value: 66 year

value: ENCBS966SZA at ENCODE; https://www.encodeproject.org/ENCBS966SZA/

value: Derived from ENCODE donor ENCDO926KEV; https://www.encodeproject.org/ENCDO926KEV/


description:
WT (25 mM glucose, 25 mM citrate) vs. WT (50 mM glucose)-rep1
Biological replicate 1 of 3
GAL file:
CG_GAL_PCR_Layout_02.gal

source_name: WT (25 mM glucose, 25 mM citrate)

value: wild type

value: WT harvest during exponential growth phase, CGXII glucose, citrate, date of experiment:2003-06/2003-09

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2003-06/2003-09


title: Histone ChIP-seq from right lobe of liver (ENCLB690PYM)

description:
https://www.encodeproject.org/experiments/ENCSR611CHC/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR611CHC
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR683VJG
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB690PYM
size range: 200-600

value: right lobe of liver

value: 16 year

value: female

value: DM:no; HTN:no; CAD:no

value: child

value: Shin Lin

value: ENCBS374JJR at ENCODE; https://www.encodeproject.org/ENCBS374JJR/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


description:
WT (50 mM sodium-citrate) vs. WT (50 mM glucose)-rep1
Biological replicate 1 of 2
original platform:
GPL15451

value: WT harvest during exponential growth phase, CGXII sodium-citrate, date of experiment:2002-11

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2002-11


title: Control Mint-ChIP-seq from HCT116 (ENCLB222XXI)

description:
https://www.encodeproject.org/experiments/ENCSR608WUK/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR608WUK
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB222XXI

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens SUPT16H

value: cell line

value: 48 year

value: male

value: colorectal carcinoma

value: adult

value: Bradley Bernstein, Broad

value: Erez Aiden

value: ENCBS456GWO at ENCODE; https://www.encodeproject.org/ENCBS456GWO/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


description:
WT (25 mM glucose, 25 mM citrate) vs. WT (50 mM glucose)-rep3
Biological replicate 3 of 3
GAL file:
CG_GAL_PCR_Layout_04.gal

value: wild type

value: WT harvest during exponential growth phase, CGXII glucose, citrate, date of experiment:2003-06/2003-09

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2003-06/2003-09


title: Mint-ChIP-seq from effector memory CD8-positive, alpha-beta T cell (ENCLB170HUM)

description:
https://www.encodeproject.org/experiments/ENCSR412YYV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR412YYV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR995LKY
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB170HUM

source_name: Homo sapiens male adult (36 years) effector memory CD8-positive, alpha-beta T primary cell

value: primary cell

value: 36 year

value: John Stamatoyannopoulos

value: ENCBS527GUI at ENCODE; https://www.encodeproject.org/ENCBS527GUI/

value: Derived from ENCODE donor ENCDO424UPQ; https://www.encodeproject.org/ENCDO424UPQ/


description:
WT (25 mM glucose, 25 mM citrate) vs. WT (50 mM glucose)-rep2
Biological replicate 2 of 3
GAL file:
CG_GAL_PCR_Layout_03.gal


description:
WT (LB, 50 mM citrate) vs. WT (LB, 50 mM glucose)-rep3
Biological replicate 3 of 3
GAL file:
CG_GAL_PCR_Layout_01.gal

source_name: WT (LB, 50 mM citrate)

value: WT harvest during exponential growth phase, LB, citrate, date of experiment:2004-07

source_name: WT (LB, 50 mM glucose)

value: WT harvest during exponential growth phase, LB, glucose, date of experiment:2004-07


title: Histone ChIP-seq from heart left ventricle (ENCLB393ZEG)

description:
https://www.encodeproject.org/experiments/ENCSR611SRO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on heart left ventricle tissue male adult (66 years).
experiment encode accession: ENCSR611SRO
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR061EXX
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB393ZEG
size range: 200-600

value: heart left ventricle

value: tissue

value: male

value: ischemic (EF 29% LVEDD 5.4; RV normal size, mild dysfunction)

value: 66 year

value: Shin Lin

value: ENCBS966SZA at ENCODE; https://www.encodeproject.org/ENCBS966SZA/

value: Derived from ENCODE donor ENCDO926KEV; https://www.encodeproject.org/ENCDO926KEV/


description:
WT (CGXII, 50 mM citrate) vs. WT (CGXII, 50 mM glucose)-rep1
Biological replicate 1 of 3
GAL file:
CG_GAL_PCR_Layout_02.gal

source_name: WT (CGXII, 50 mM citrate)

value: wild type

value: WT harvest during exponential growth phase, CGXII citrate, date of experiment:2003-06/2003-09

source_name: WT (CGXII, 50 mM glucose)


description:
WT (CGXII, 50 mM citrate) vs. WT (CGXII, 50 mM glucose)-rep2
Biological replicate 2 of 3
GAL file:
CG_GAL_PCR_Layout_03.gal

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2003-06/2003-09


description:
WT (CGXII, 50 mM citrate) vs. WT (CGXII, 50 mM glucose)-rep3
Biological replicate 3 of 3
GAL file:
CG_GAL_PCR_Layout_04.gal


description:
WT (LB, 50 mM citrate) vs. WT (LB, 50 mM glucose)-rep2
Biological replicate 2 of 3
GAL file:
CG_GAL_PCR_Layout_01.gal


title: Histone ChIP-seq from right lobe of liver (ENCLB133AJG)

description:
https://www.encodeproject.org/experiments/ENCSR810PYW/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR810PYW
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR309LQG
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB133AJG
size range: 200-600

source_name: Homo sapiens female adult (41 years) right lobe of liver tissue

value: right lobe of liver

value: 41 year

value: female

value: DM:no; HTN:no; CAD:no

value: adult

value: Bradley Bernstein, Broad

value: ENCBS971GGI at ENCODE; https://www.encodeproject.org/ENCBS971GGI/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB202ABY)

description:
https://www.encodeproject.org/experiments/ENCSR607IHY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR607IHY
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR243LHN
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB202ABY
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) with Alzheimer's disease; middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: 90 or above year

value: Rush University

value: ENCBS708DHS at ENCODE; https://www.encodeproject.org/ENCBS708DHS/

value: Derived from ENCODE donor ENCDO223NTQ; https://www.encodeproject.org/ENCDO223NTQ/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB504INK)

description:
https://www.encodeproject.org/experiments/ENCSR607IHY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR607IHY
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR243LHN
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB504INK
size range: 200-600


description:
WT (LB, 50 mM citrate) vs. WT (LB, 50 mM glucose)-rep1
Biological replicate 1 of 3
GAL file:
CG_GAL_PCR_Layout_01.gal

value: wild type

value: WT harvest during exponential growth phase, LB, citrate, date of experiment:2004-07

value: WT harvest during exponential growth phase, LB, glucose, date of experiment:2004-07


description:
WT (50 mM glucose, 50 mM methylmalonic acid) vs. WT (100 mM glucose)-rep2
Biological replicate 2 of 2
original platform:
GPL15451

value: WT harvest during exponential growth phase, CGXII glucose, methylmalonic acid, date of experiment:2007-05

source_name: WT (100 mM glucose)

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2007-05


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB492OPG)

description:
https://www.encodeproject.org/experiments/ENCSR606IXH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR606IXH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR239ZVK
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB492OPG

source_name: Homo sapiens male adult (33 years) naive thymus-derived CD8-positive, alpha-beta T primary cell

value: primary cell

value: 33 year

value: male

value: John Stamatoyannopoulos

value: ENCBS538USD at ENCODE; https://www.encodeproject.org/ENCBS538USD/

value: Derived from ENCODE donor ENCDO830ROH; https://www.encodeproject.org/ENCDO830ROH/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB581XOH)

description:
https://www.encodeproject.org/experiments/ENCSR606IXH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR606IXH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR239ZVK
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB581XOH

value: adult

value: Bradley Bernstein, Broad


title: Control Mint-ChIP-seq from HCT116 (ENCLB030WPM)

description:
https://www.encodeproject.org/experiments/ENCSR608WUK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR608WUK
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB030WPM

value: cell line

value: 48 year

value: colorectal carcinoma

value: Erez Aiden

value: ENCBS456GWO at ENCODE; https://www.encodeproject.org/ENCBS456GWO/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: Mint-ChIP-seq from HCT116 (ENCLB859MKT)

description:
https://www.encodeproject.org/experiments/ENCSR809YOX/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR809YOX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR704TRV
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB859MKT

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens CDK7

value: ENCBS982XND at ENCODE; https://www.encodeproject.org/ENCBS982XND/


description:
WT (50 mM glucose, 50 mM methylmalonic acid) vs. WT (100 mM glucose)-rep1
Biological replicate 1 of 2
original platform:
GPL15451

value: wild type

value: WT harvest during exponential growth phase, CGXII glucose, methylmalonic acid, date of experiment:2007-05


title: Mint-ChIP-seq from HCT116 (ENCLB248OMP)

description:
https://www.encodeproject.org/experiments/ENCSR809YOX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR809YOX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR704TRV
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB248OMP


description:
WT (100 mM lactate) vs. WT (100 mM glucose)-rep1
Biological replicate 1 of 3
original platform:
GPL15451

source_name: WT (100 mM lactate)

value: WT harvest during exponential growth phase, CGXII lactate, date of experiment:2007-04/2007-05/2007-08

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2007-04/2007-05/2007-08


description:
WT (100 mM lactate) vs. WT (100 mM glucose)-rep3
Biological replicate 3 of 3
original platform:
GPL15451


title: Mint-ChIP-seq from HCT116 (ENCLB040ERP)

description:
https://www.encodeproject.org/experiments/ENCSR412FVA/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR412FVA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR642FUX
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB040ERP

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens RAD21

value: male

value: ENCBS891BUF at ENCODE; https://www.encodeproject.org/ENCBS891BUF/


title: Histone ChIP-seq from right lobe of liver (ENCLB486HOI)

description:
https://www.encodeproject.org/experiments/ENCSR810PYW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR810PYW
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR309LQG
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB486HOI
size range: 200-600

value: right lobe of liver

value: tissue

value: 41 year

value: female

value: DM:no; HTN:no; CAD:no

value: Shin Lin

value: ENCBS971GGI at ENCODE; https://www.encodeproject.org/ENCBS971GGI/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Mint-ChIP-seq from stimulated activated naive CD8-positive, alpha-beta T cell (ENCLB226PYF)

description:
https://www.encodeproject.org/experiments/ENCSR207ZAR/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR207ZAR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR414ZUR
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB226PYF

source_name: Homo sapiens male adult (36 years) stimulated activated naive CD8-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours

value: primary cell

value: 36 year

value: adult

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:72; duration_units:hour;

value: ENCBS253TXN at ENCODE; https://www.encodeproject.org/ENCBS253TXN/

value: Derived from ENCODE donor ENCDO424UPQ; https://www.encodeproject.org/ENCDO424UPQ/


title: Mint-ChIP-seq from HCT116 (ENCLB843CPW)

description:
https://www.encodeproject.org/experiments/ENCSR412FVA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR412FVA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR642FUX
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB843CPW

value: cell line

value: 48 year

value: male

value: colorectal carcinoma

value: Erez Aiden

value: ENCBS891BUF at ENCODE; https://www.encodeproject.org/ENCBS891BUF/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: Mint-ChIP-seq from stimulated activated naive CD8-positive, alpha-beta T cell (ENCLB252YGZ)

description:
https://www.encodeproject.org/experiments/ENCSR207ZAR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR207ZAR
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR414ZUR
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB252YGZ


description:
WT (100 mM pyruvate) vs. WT (100 mM lactate)-rep4
Biological replicate 4 of 6
GAL file:
CG_GAL_PCR_Layout_00.gal

source_name: WT (100 mM pyru

value: wild type

value: WT harvest during exponential growth phase, CGXII pyruvate, date of experiment:2005-01

source_name: ate)

value: WT  harvest during exponential growth phase, CGXII lactate, date of experiment:2005-01


description:
WT (100 mM pyruvate) vs. WT (100 mM lactate)-rep6
Biological replicate 6 of 6
GAL file:
CG_GAL_PCR_Layout_00.gal


title: Control Mint-ChIP-seq from effector memory CD8-positive, alpha-beta T cell (ENCLB377RUT)

description:
https://www.encodeproject.org/experiments/ENCSR809CJF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR809CJF
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB377RUT

source_name: Homo sapiens male adult (33 years) effector memory CD8-positive, alpha-beta T primary cell

value: primary cell

value: 33 year

value: ENCBS509OFL at ENCODE; https://www.encodeproject.org/ENCBS509OFL/

value: Derived from ENCODE donor ENCDO830ROH; https://www.encodeproject.org/ENCDO830ROH/


title: Control Mint-ChIP-seq from effector memory CD8-positive, alpha-beta T cell (ENCLB028FCK)

description:
https://www.encodeproject.org/experiments/ENCSR809CJF/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR809CJF
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB028FCK

value: adult

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos


description:
WT (100 mM pyruvate) vs. WT (100 mM lactate)-rep3
Biological replicate 3 of 6
GAL file:
CG_GAL_PCR_Layout_00.gal


description:
WT (250 mM GABA, 20 mM K2SO4, w/o (NH4)2SO4 and urea) vs. WT (250 mM GABA,  w/o urea)-rep4
Biological replicate 4 of 4
original platform:
GPL22794

value: WT harvest during exponential growth phase, CGXII GABA, K2SO4, w/o (NH4)2SO4 and urea, date of experiment:2018-04

source_name: WT (250 mM GABA,  w/o urea)

value: WT harvest during exponential growth phase, OD 5, CGXII GABA,  w/o urea, date of experiment:2018-04


title: Mint-ChIP-seq from HCT116 (ENCLB537YMH)

description:
https://www.encodeproject.org/experiments/ENCSR808WHQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR808WHQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR846UXS
encode release date: 2022-06-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB537YMH

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens RAD21 treated with 1uM 5-Phenyl-1H-indole-3-acetic acid for 6 hours

value: cell line

value: 48 year

value: male

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS720OOT at ENCODE; https://www.encodeproject.org/ENCBS720OOT/


description:
WT (100 mM pyruvate) vs. WT (100 mM lactate)-rep1
Biological replicate 1 of 6
GAL file:
CG_GAL_PCR_Layout_00.gal

value: wild type


description:
WT (100 mM lactate) vs. WT (100 mM glucose)-rep2
Biological replicate 2 of 3
original platform:
GPL15451

value: WT harvest during exponential growth phase, CGXII lactate, date of experiment:2007-04/2007-05/2007-08

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2007-04/2007-05/2007-08


title: Mint-ChIP-seq from HCT116 (ENCLB506QHM)

description:
https://www.encodeproject.org/experiments/ENCSR411QUG/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR411QUG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR846UXS
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB506QHM

value: colorectal carcinoma

value: Erez Aiden

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


description:
WT (100 mM pyruvate) vs. WT (100 mM lactate)-rep5
Biological replicate 5 of 6
GAL file:
CG_GAL_PCR_Layout_00.gal

value: WT harvest during exponential growth phase, CGXII pyruvate, date of experiment:2005-01

value: WT  harvest during exponential growth phase, CGXII lactate, date of experiment:2005-01


title: Mint-ChIP-seq from HCT116 (ENCLB120QUP)

description:
https://www.encodeproject.org/experiments/ENCSR411QUG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR411QUG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR846UXS
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB120QUP

value: adult

value: Bradley Bernstein, Broad


description:
WT (250 mM GABA, 20 mM K2SO4, w/o (NH4)2SO4 and urea) vs. WT (250 mM GABA,  w/o urea)-rep3
Biological replicate 3 of 4
original platform:
GPL22794

value: WT harvest during exponential growth phase, CGXII GABA, K2SO4, w/o (NH4)2SO4 and urea, date of experiment:2018-04


description:
WT (250 mM GABA, 20 mM K2SO4, w/o (NH4)2SO4 and urea) vs. WT (250 mM GABA,  w/o urea)-rep2
Biological replicate 2 of 4
original platform:
GPL22794

value: WT harvest during exponential growth phase, OD 5, CGXII GABA,  w/o urea, date of experiment:2018-04


description:
WT (250 mM GABA, 20 mM K2SO4, w/o (NH4)2SO4 and urea) vs. WT (250 mM GABA,  w/o urea)-rep1
Biological replicate 1 of 4
original platform:
GPL22794


title: 44_WT 250mM GABA vs WT_250mM glucose-rep4

description:
WT (250 mM GABA, 20 mM K2SO4, w/o (NH4)2SO4, 83 mM urea) vs. WT (250 mM glucose, 20 mM K2SO4, w/o (NH4)2SO4, 83 mM urea)-rep4
Biological replicate 4 of 4
original platform:
GPL22794

value: WT harvest during exponential growth phase, CGXII GABA, K2SO4, w/o (NH4)2SO4, 83 mM urea, date of experiment:2018-05, GEO:GSE138828

value: WT harvest during exponential growth phase, OD 5, CGXII glucose, K2SO4, w/o (NH4)2SO4, 83 mM urea, date of experiment:2018-05, GEO:GSE138828


description:
WT (100 mM pyruvate) vs. WT (100 mM lactate)-rep2
Biological replicate 2 of 6
GAL file:
CG_GAL_PCR_Layout_00.gal


title: TF ChIP-seq from activated CD4-positive, alpha-beta T cell (ENCLB577HMI)

description:
https://www.encodeproject.org/experiments/ENCSR806WWX/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR806WWX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR515GMO
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB577HMI
size range: 200-600

source_name: Homo sapiens male adult (20 years) activated CD4-positive, alpha-beta T primary cell

value: CTCF

value: primary cell

value: 20 year

value: male

value: Charles Lee

value: ENCBS326GDW at ENCODE; https://www.encodeproject.org/ENCBS326GDW/

value: Derived from ENCODE donor ENCDO394DKX; https://www.encodeproject.org/ENCDO394DKX/


title: Mint-ChIP-seq from natural killer cell (ENCLB926AHR)

description:
https://www.encodeproject.org/experiments/ENCSR806KBO/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR806KBO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR430XVL
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB926AHR

source_name: Homo sapiens female adult (41 years) natural killer primary cell treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for...

value: natural killer cell

value: 41 year

value: female

value: John Stamatoyannopoulos

value: treatment_term_id:UniProtKB:Q14116; treatment_term_name:Interleukin-18; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P29460; treatment_term_name:Interleukin-12 subunit beta; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:72; duration_units:hour;

value: ENCBS623MIU at ENCODE; https://www.encodeproject.org/ENCBS623MIU/

value: Derived from ENCODE donor ENCDO911LCI; https://www.encodeproject.org/ENCDO911LCI/


title: TF ChIP-seq from activated CD4-positive, alpha-beta T cell (ENCLB110JHX)

description:
https://www.encodeproject.org/experiments/ENCSR806WWX/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR806WWX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR515GMO
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB110JHX
size range: 200-600

value: adult

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from natural killer cell (ENCLB805FHA)

description:
https://www.encodeproject.org/experiments/ENCSR806KBO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR806KBO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR430XVL
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB805FHA

value: ENCBS492DTF at ENCODE; https://www.encodeproject.org/ENCBS492DTF/


title: Mint-ChIP-seq from HCT116 (ENCLB550SPG)

description:
https://www.encodeproject.org/experiments/ENCSR808WHQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR808WHQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR846UXS
encode release date: 2022-06-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB550SPG

value: cell line

value: 48 year

value: colorectal carcinoma

value: Erez Aiden

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS720OOT at ENCODE; https://www.encodeproject.org/ENCBS720OOT/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: Mint-ChIP-seq from HCT116 (ENCLB136YYF)

description:
https://www.encodeproject.org/experiments/ENCSR409WPE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR409WPE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR704TRV
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB136YYF

value: male

value: ENCBS982XND at ENCODE; https://www.encodeproject.org/ENCBS982XND/


title: TF ChIP-seq from activated CD4-positive, alpha-beta T cell (ENCLB524XTI)

description:
https://www.encodeproject.org/experiments/ENCSR806WWX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR806WWX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR515GMO
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB524XTI
size range: 200-600

value: CTCF

value: primary cell

value: 20 year

value: Charles Lee

value: ENCBS326GDW at ENCODE; https://www.encodeproject.org/ENCBS326GDW/

value: Derived from ENCODE donor ENCDO394DKX; https://www.encodeproject.org/ENCDO394DKX/


title: Mint-ChIP-seq from natural killer cell (ENCLB928IUD)

description:
https://www.encodeproject.org/experiments/ENCSR806KBO/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR806KBO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR430XVL
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB928IUD

value: natural killer cell

value: 41 year

value: female

value: adult

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: treatment_term_id:UniProtKB:Q14116; treatment_term_name:Interleukin-18; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P29460; treatment_term_name:Interleukin-12 subunit beta; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:72; duration_units:hour;

value: Derived from ENCODE donor ENCDO911LCI; https://www.encodeproject.org/ENCDO911LCI/


title: Mint-ChIP-seq from natural killer cell (ENCLB719NLO)

description:
https://www.encodeproject.org/experiments/ENCSR806KBO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR806KBO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR430XVL
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB719NLO

value: ENCBS623MIU at ENCODE; https://www.encodeproject.org/ENCBS623MIU/


description:
WT (70 mM glutamate, w/o (NH4)2SO4 and urea) vs. WT  (70 mM glutamine, w/o (NH4)2SO4 and w/o urea)-rep2
Biological replicate 2 of 2
original platform:
GPL15451

value: wild type

value: WT harvested during exponential growth phase, CGXII glutamate, w/o (NH4)2SO4 and urea, date of experiment:2007-03/2007-05

value: WT harvested during exponential phase, OD 5, CGXII glutamine, w/o (NH4)2SO4 and w/o urea, date of experiment:2007-03/2007-05


title: Mint-ChIP-seq from progenitor cell of endocrine pancreas (ENCLB070SAS)

description:
https://www.encodeproject.org/experiments/ENCSR409VPZ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on progenitor cell of endocrine pancreas
experiment encode accession: ENCSR409VPZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR546XZC
encode release date: 2022-04-29
lab: Bradley Bernstein, Broad
library encode accession: ENCLB070SAS

source_name: Homo sapiens female embryo (5 days) progenitor of endocrine pancreas in vitro differentiated cells

value: progenitor cell of endocrine pancreas

value: in vitro differentiated cells

value: WA09 derived pancreatic progenitor cells

value: embryonic

value: 5 day

value: SESCC

value: healthy

value: ENCBS832MSN at ENCODE; https://www.encodeproject.org/ENCBS832MSN/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: Mint-ChIP-seq from progenitor cell of endocrine pancreas (ENCLB308AGF)

description:
https://www.encodeproject.org/experiments/ENCSR409VPZ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on progenitor cell of endocrine pancreas
experiment encode accession: ENCSR409VPZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR546XZC
encode release date: 2022-04-29
lab: Bradley Bernstein, Broad
library encode accession: ENCLB308AGF

source_name: Homo sapiens female embryo (5 days) progenitor of endocrine pancreas in vitro differentiated cells originated from progenitor cell of endocrine pancreas

value: female

value: Bradley Bernstein, Broad

value: ENCBS825BIV at ENCODE; https://www.encodeproject.org/ENCBS825BIV/


title: 41_WT 250mM GABA vs WT_250mM glucose-rep1

description:
WT (250 mM GABA, 20 mM K2SO4, w/o (NH4)2SO4, 83 mM urea) vs. WT (250 mM glucose, 20 mM K2SO4, w/o (NH4)2SO4, 83 mM urea)-rep1
Biological replicate 1 of 4
original platform:
GPL22794

value: WT harvest during exponential growth phase, CGXII GABA, K2SO4, w/o (NH4)2SO4, 83 mM urea, date of experiment:2018-05, GEO:GSE138828

value: WT harvest during exponential growth phase, OD 5, CGXII glucose, K2SO4, w/o (NH4)2SO4, 83 mM urea, date of experiment:2018-05, GEO:GSE138828


title: 43_WT 250mM GABA vs WT_250mM glucose-rep3

description:
WT (250 mM GABA, 20 mM K2SO4, w/o (NH4)2SO4, 83 mM urea) vs. WT (250 mM glucose, 20 mM K2SO4, w/o (NH4)2SO4, 83 mM urea)-rep3
Biological replicate 3 of 4
original platform:
GPL22794

value: wild type


title: 42_WT 250mM GABA vs WT_250mM glucose-rep2

description:
WT (250 mM GABA, 20 mM K2SO4, w/o (NH4)2SO4, 83 mM urea) vs. WT (250 mM glucose, 20 mM K2SO4, w/o (NH4)2SO4, 83 mM urea)-rep2
Biological replicate 2 of 4
original platform:
GPL22794


description:
WT (70 mM oxoproline, w/o (NH4)2SO4 and w/o urea) vs. WT (70 mM glutamine, w/o (NH4)2SO4 and w/o urea)-rep2
Biological replicate 2 of 2
original platform:
GPL15451

value: WT harvested during exponential growth phase, CGXII oxoproline, w/o (NH4)2SO4 and w/o urea, date of experiment:2007-03/2007-05


description:
WT (500 mM GABA) vs. WT (500 mM glucose)-rep1
Biological replicate 1 of 4
original platform:
GPL22561

source_name: WT (500 mM GABA)

value: WT harvest during exponential growth phase, CGXII GABA, date of experiment:2017-06

source_name: WT (500 mM glucose)

value: WT harvest during exponential growth phase, OD 5, CGXII glucose, date of experiment:2017-06


description:
WT (500 mM GABA) vs. WT (500 mM glucose)-rep2
Biological replicate 2 of 4
original platform:
GPL22561


description:
WT (500 mM GABA) vs. WT (500 mM glucose)-rep4
Biological replicate 4 of 4
original platform:
GPL22561


description:
WT (70 mM glutamate, w/o (NH4)2SO4 and urea) vs. WT  (70 mM glutamine, w/o (NH4)2SO4 and w/o urea)-rep1
Biological replicate 1 of 2
original platform:
GPL15451

value: WT harvested during exponential growth phase, CGXII glutamate, w/o (NH4)2SO4 and urea, date of experiment:2007-03/2007-05

value: WT harvested during exponential phase, OD 5, CGXII glutamine, w/o (NH4)2SO4 and w/o urea, date of experiment:2007-03/2007-05


description:
WT (500 mM GABA) vs. WT (500 mM glucose)-rep3
Biological replicate 3 of 4
original platform:
GPL22561


description:
WT (70 mM oxoproline, w/o (NH4)2SO4 and w/o urea) vs. WT (70 mM glutamine, w/o (NH4)2SO4 and w/o urea)-rep1
Biological replicate 1 of 2
original platform:
GPL15451


description:
WT (70 mM glutamine, 70 mM oxoproline, w/o (NH4)2SO4 and urea, ) vs. WT (w/o (NH4)2SO4 and urea, 70 mM glutamine)-rep3
Biological replicate 3 of 3
original platform:
GPL15451

value: WT harvested during exponential growth phase, CGXII glutamine, oxoproline, w/o (NH4)2SO4 and urea, date of experiment:2007-05

value: WT harvested during exponential phase, OD 5, CGXII w/o (NH4)2SO4 and urea, 70 mM glutamine, date of experiment:2007-05


description:
WT (70 mM glutamine, 70 mM oxoproline, w/o (NH4)2SO4 and urea, ) vs. WT (w/o (NH4)2SO4 and urea, 70 mM glutamine)-rep2
Biological replicate 2 of 3
original platform:
GPL15451


title: Mint-ChIP-seq from HCT116 (ENCLB408MXG)

description:
https://www.encodeproject.org/experiments/ENCSR409WPE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR409WPE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR704TRV
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB408MXG

value: cell line

value: 48 year

value: male

value: colorectal carcinoma

value: adult

value: Erez Aiden

value: ENCBS982XND at ENCODE; https://www.encodeproject.org/ENCBS982XND/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: Mint-ChIP-seq from natural killer cell (ENCLB503MFR)

description:
https://www.encodeproject.org/experiments/ENCSR201OQC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR201OQC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR387IEL
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB503MFR

source_name: Homo sapiens male adult (47 years) natural killer primary cell treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 7...

value: natural killer cell

value: primary cell

value: 47 year

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: treatment_term_id:UniProtKB:Q14116; treatment_term_name:Interleukin-18; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P29460; treatment_term_name:Interleukin-12 subunit beta; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:72; duration_units:hour;

value: ENCBS177IBD at ENCODE; https://www.encodeproject.org/ENCBS177IBD/

value: Derived from ENCODE donor ENCDO311UBW; https://www.encodeproject.org/ENCDO311UBW/


title: Mint-ChIP-seq from natural killer cell (ENCLB446WGI)

description:
https://www.encodeproject.org/experiments/ENCSR201OQC/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR201OQC
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR387IEL
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB446WGI


description:
WT (70 mM glutamine, 70 mM oxoproline, w/o (NH4)2SO4 and urea, ) vs. WT (w/o (NH4)2SO4 and urea, 70 mM glutamine)-rep1
Biological replicate 1 of 3
original platform:
GPL15451

value: wild type

value: WT harvested during exponential growth phase, CGXII glutamine, oxoproline, w/o (NH4)2SO4 and urea, date of experiment:2007-05

value: WT harvested during exponential phase, OD 5, CGXII w/o (NH4)2SO4 and urea, 70 mM glutamine, date of experiment:2007-05


title: Mint-ChIP-seq from activated naive CD4-positive, alpha-beta T cell (ENCLB008DEV)

description:
https://www.encodeproject.org/experiments/ENCSR603AQY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR603AQY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR007JEX
encode release date: 2022-04-29
lab: Bradley Bernstein, Broad
library encode accession: ENCLB008DEV

source_name: Homo sapiens male adult (38 years) activated naive CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours

value: 38 year

value: male

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS567USS at ENCODE; https://www.encodeproject.org/ENCBS567USS/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: Mint-ChIP-seq from activated naive CD4-positive, alpha-beta T cell (ENCLB160VCP)

description:
https://www.encodeproject.org/experiments/ENCSR603AQY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR603AQY
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR007JEX
encode release date: 2022-04-29
lab: Bradley Bernstein, Broad
library encode accession: ENCLB160VCP

value: adult


title: Control ChIP-seq from heart right ventricle (ENCLB447ZXX)

description:
https://www.encodeproject.org/experiments/ENCSR597PTH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR597PTH
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-06-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB447ZXX
size range: 200-600

source_name: Homo sapiens male adult (55 years) heart right ventricle tissue

value: heart right ventricle

value: tissue

value: 55 year

value: ischemic (EF 25% LVEDD 6.9; RV normal size, moderate dysfunction)

value: Shin Lin

value: ENCBS377GPP at ENCODE; https://www.encodeproject.org/ENCBS377GPP/

value: Derived from ENCODE donor ENCDO439CAZ; https://www.encodeproject.org/ENCDO439CAZ/


title: Control ChIP-seq from heart right ventricle (ENCLB158LSY)

description:
https://www.encodeproject.org/experiments/ENCSR597PTH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR597PTH
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-06-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB158LSY
size range: 200-600

value: Bradley Bernstein, Broad


description:
WT (70 mM glutamine, w/o (NH4)2SO4 and urea) vs. WT (w/o (NH4)2SO4 and urea)-rep3
Biological replicate 3 of 3
original platform:
GPL15451

value: wild type

value: WT harvested during exponential growth phase, CGXII glutamine, w/o (NH4)2SO4 and urea, date of experiment:2007-01

source_name: WT (w/o (NH4)2SO4 and urea)

value: WT harvested during exponential growth phase, OD 5, CGXII w/o (NH4)2SO4 and urea, date of experiment:2007-01


description:
WT (70 mM glutamine, w/o (NH4)2SO4 and urea) vs. WT (w/o (NH4)2SO4 and urea)-rep2
Biological replicate 2 of 3
original platform:
GPL15451


description:
WT (70 mM glutamine, w/o (NH4)2SO4 and urea) vs. WT (w/o urea)-rep2
Biological replicate 2 of 2
original platform:
GPL9860

value: WT harvested during exponential growth phase, CGXII glutamine, w/o (NH4)2SO4 and urea, date of experiment:2006-09, GEO:GSE19779

source_name: WT (w/o urea)

value: WT harvested during exponential phase, OD 5, CGXII glutamine, w/o urea, date of experiment:2006-09, GEO:GSE19779


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB357WBY)

description:
https://www.encodeproject.org/experiments/ENCSR596FCE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR596FCE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR111BQQ
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB357WBY

source_name: Homo sapiens male adult (38 years) CD4-positive, CD25-positive, alpha-beta regulatory T primary cell

value: primary cell

value: 38 year

value: male

value: John Stamatoyannopoulos

value: ENCBS879HBS at ENCODE; https://www.encodeproject.org/ENCBS879HBS/


title: Mint-ChIP-seq from progenitor cell of endocrine pancreas (ENCLB573UZC)

description:
https://www.encodeproject.org/experiments/ENCSR409VPZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on progenitor cell of endocrine pancreas
experiment encode accession: ENCSR409VPZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR546XZC
encode release date: 2022-04-29
lab: Bradley Bernstein, Broad
library encode accession: ENCLB573UZC

value: progenitor cell of endocrine pancreas

value: in vitro differentiated cells

value: WA09 derived pancreatic progenitor cells

value: female

value: embryonic

value: 5 day

value: SESCC

value: healthy

value: ENCBS832MSN at ENCODE; https://www.encodeproject.org/ENCBS832MSN/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


description:
WT (70 mM glutamine, w/o (NH4)2SO4 and urea) vs. WT (w/o urea)-rep1
Biological replicate 1 of 2
original platform:
GPL9860

value: wild type

value: WT harvested during exponential growth phase, CGXII glutamine, w/o (NH4)2SO4 and urea, date of experiment:2006-09, GEO:GSE19779


title: Mint-ChIP-seq from activated naive CD4-positive, alpha-beta T cell (ENCLB485SOG)

description:
https://www.encodeproject.org/experiments/ENCSR200AAX/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR200AAX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR007JEX
encode release date: 2022-04-29
lab: Bradley Bernstein, Broad
library encode accession: ENCLB485SOG

value: primary cell

value: adult

value: Bradley Bernstein, Broad

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS567USS at ENCODE; https://www.encodeproject.org/ENCBS567USS/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: Mint-ChIP-seq from activated naive CD4-positive, alpha-beta T cell (ENCLB884GAR)

description:
https://www.encodeproject.org/experiments/ENCSR200AAX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR200AAX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR007JEX
encode release date: 2022-04-29
lab: Bradley Bernstein, Broad
library encode accession: ENCLB884GAR

value: 38 year

value: male

value: John Stamatoyannopoulos


title: WT (anaerob 120 min) vs. WT-rep4

description:
WT (anaerob 120 min) vs. WT-rep4
Biological replicate 4 of 4
original platform:
GPL17304

source_name: WT (anaerob 120 min)

value: WT harvested after anaerobic cultivation for 120 min, CGXII glucose w/o MOPS + 15 g/l tryptone, date of experiment:2012-05/2015-06

source_name: WT

value: WT harvested during exponential growth phase, OD 5, CGXII glucose w/o MOPS + 15 g/l tryptone, date of experiment:2012-05/2015-06


title: Mint-ChIP-seq from stimulated activated naive B cell (ENCLB078GMV)

description:
https://www.encodeproject.org/experiments/ENCSR594ZHO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR594ZHO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR390KLC
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB078GMV

source_name: Homo sapiens male adult (40 years) stimulated activated naive B primary cell treated with 1ug/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10ug/mL anti-IgM for 72 hours

value: stimulated activated naive B cell

value: 40 year

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:72; duration_units:hour; temperature:37; temperature_units:Celsius; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:72; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:72; duration_units:hour; temperature:37; temperature_units:Celsius;

value: ENCBS304VHM at ENCODE; https://www.encodeproject.org/ENCBS304VHM/

value: Derived from ENCODE donor ENCDO512FEI; https://www.encodeproject.org/ENCDO512FEI/


title: WT (anaerob 120 min) vs. WT-rep1

description:
WT (anaerob 120 min) vs. WT-rep1
Biological replicate 1 of 4
original platform:
GPL17304

value: wild type


title: WT (anaerob 30 min) vs. WT-rep4

description:
WT (anaerob 30 min) vs. WT-rep4
Biological replicate 4 of 4
original platform:
GPL17304

source_name: WT (anaerob 30 min)

value: WT harvested after anaerobic cultivation for 30 min, CGXII glucose w/o MOPS + 15 g/l tryptone, date of experiment:2012-05/2015-06


title: Mint-ChIP-seq from stimulated activated naive B cell (ENCLB714PTW)

description:
https://www.encodeproject.org/experiments/ENCSR594ZHO/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR594ZHO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR390KLC
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB714PTW

value: primary cell

value: adult


title: WT (anaerob 120 min) vs. WT-rep3

description:
WT (anaerob 120 min) vs. WT-rep3
Biological replicate 3 of 4
original platform:
GPL17304


title: WT (anaerob 30 min) vs. WT-rep2

description:
WT (anaerob 30 min) vs. WT-rep2
Biological replicate 2 of 4
original platform:
GPL17304


title: WT (anaerob 30 min) vs. WT-rep3

description:
WT (anaerob 30 min) vs. WT-rep3
Biological replicate 3 of 4
original platform:
GPL17304


title: WT (anaerob 120 min) vs. WT-rep2

description:
WT (anaerob 120 min) vs. WT-rep2
Biological replicate 2 of 4
original platform:
GPL17304


title: Mint-ChIP-seq from Calu3 (ENCLB682HAR)

description:
https://www.encodeproject.org/experiments/ENCSR198AUP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR198AUP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR372VUZ
encode release date: 2022-06-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB682HAR

source_name: Homo sapiens Calu3 cell line

value: cell line

value: 25 year

value: Lung adenocarcinoma

value: Bradley Bernstein, Broad

value: Mats Ljungman

value: ENCBS827USO at ENCODE; https://www.encodeproject.org/ENCBS827USO/

value: Derived from ENCODE donor ENCDO109DGE; https://www.encodeproject.org/ENCDO109DGE/


title: Mint-ChIP-seq from progenitor cell of endocrine pancreas (ENCLB724OFD)

description:
https://www.encodeproject.org/experiments/ENCSR409VPZ/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on progenitor cell of endocrine pancreas
experiment encode accession: ENCSR409VPZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR546XZC
encode release date: 2022-04-29
lab: Bradley Bernstein, Broad
library encode accession: ENCLB724OFD

value: progenitor cell of endocrine pancreas

value: in vitro differentiated cells

value: WA09 derived pancreatic progenitor cells

value: female

value: healthy

value: embryonic

value: 5 day

value: SESCC

value: ENCBS825BIV at ENCODE; https://www.encodeproject.org/ENCBS825BIV/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: WT (anaerob 10 min) vs. WT_operon-rep3

description:
WT (anaerob 10 min) vs. WT_operon-rep3
Biological replicate 3 of 3
original platform:
GPL15451

source_name: WT (anaerob 10 min)

value: wild type

value: WT harvested after anaerobic cultivation for 10 min, CGXII glucose w/o MOPS + 15 g/l tryptone, date of experiment:2010-09

value: WT harvested during exponential growth phase, OD 5, CGXII glucose w/o MOPS + 15 g/l tryptone, date of experiment:2010-09


title: Mint-ChIP-seq from Calu3 (ENCLB601FFZ)

description:
https://www.encodeproject.org/experiments/ENCSR198AUP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR198AUP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR372VUZ
encode release date: 2022-06-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB601FFZ

value: cell line

value: 25 year

value: male

value: Lung adenocarcinoma

value: adult

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB008YYW)

description:
https://www.encodeproject.org/experiments/ENCSR596FCE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR596FCE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR111BQQ
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB008YYW

value: primary cell

value: 38 year

value: John Stamatoyannopoulos

value: ENCBS879HBS at ENCODE; https://www.encodeproject.org/ENCBS879HBS/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


description:
WT (70 mM glutamine, w/o (NH4)2SO4 and urea) vs. WT (w/o (NH4)2SO4 and urea)-rep1
Biological replicate 1 of 3
original platform:
GPL15451

value: WT harvested during exponential growth phase, CGXII glutamine, w/o (NH4)2SO4 and urea, date of experiment:2007-01

value: WT harvested during exponential growth phase, OD 5, CGXII w/o (NH4)2SO4 and urea, date of experiment:2007-01


title: Mint-ChIP-seq from stimulated activated memory B cell (ENCLB197WRV)

description:
https://www.encodeproject.org/experiments/ENCSR406YIZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR406YIZ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR655TYY
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB197WRV

source_name: Homo sapiens male adult (40 years) stimulated activated memory B primary cell treated with 1ug/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10ug/mL anti-IgM for 72 hours

value: stimulated activated memory B cell

value: 40 year

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:72; duration_units:hour; temperature:37; temperature_units:Celsius; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:72; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:72; duration_units:hour; temperature:37; temperature_units:Celsius;

value: ENCBS619HZC at ENCODE; https://www.encodeproject.org/ENCBS619HZC/

value: Derived from ENCODE donor ENCDO512FEI; https://www.encodeproject.org/ENCDO512FEI/


title: Histone ChIP-seq from right lobe of liver (ENCLB252MPD)

description:
https://www.encodeproject.org/experiments/ENCSR590AJV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR590AJV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR683VJG
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB252MPD
size range: 200-600

source_name: Homo sapiens female child (16 years) right lobe of liver tissue

value: right lobe of liver

value: tissue

value: 16 year

value: female

value: DM:no; HTN:no; CAD:no

value: child

value: Shin Lin

value: ENCBS374JJR at ENCODE; https://www.encodeproject.org/ENCBS374JJR/

value: Derived from ENCODE donor ENCDO575EGL; https://www.encodeproject.org/ENCDO575EGL/


title: Histone ChIP-seq from right lobe of liver (ENCLB674TIN)

description:
https://www.encodeproject.org/experiments/ENCSR590AJV/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR590AJV
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR683VJG
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB674TIN
size range: 200-600

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB427FSU)

description:
https://www.encodeproject.org/experiments/ENCSR197UDN/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR197UDN
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR173UJQ
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB427FSU

source_name: Homo sapiens male adult (51 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: 51 year

value: male

value: adult

value: Charles Lee

value: ENCBS409NZS at ENCODE; https://www.encodeproject.org/ENCBS409NZS/

value: Derived from ENCODE donor ENCDO346BRO; https://www.encodeproject.org/ENCDO346BRO/


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB354YFG)

description:
https://www.encodeproject.org/experiments/ENCSR197UDN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR197UDN
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR173UJQ
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB354YFG


title: WT (anaerob 30 min) vs. WT-rep1

description:
WT (anaerob 30 min) vs. WT-rep1
Biological replicate 1 of 4
original platform:
GPL17304

value: wild type

value: WT harvested after anaerobic cultivation for 30 min, CGXII glucose w/o MOPS + 15 g/l tryptone, date of experiment:2012-05/2015-06

value: WT harvested during exponential growth phase, OD 5, CGXII glucose w/o MOPS + 15 g/l tryptone, date of experiment:2012-05/2015-06


title: Mint-ChIP-seq from HCT116 (ENCLB987JOY)

description:
https://www.encodeproject.org/experiments/ENCSR197PUB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR197PUB
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR861TAI
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB987JOY

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens SUPT16H treated with 1uM 5-Phenyl-1H-indole-3-acetic acid for 6 hours

value: cell line

value: 48 year

value: colorectal carcinoma

value: Erez Aiden

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS456IZA at ENCODE; https://www.encodeproject.org/ENCBS456IZA/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/