title: nasal_prox1_854

description: Nasal Prox1+ cells


title: YSH004

status: Public on Jul 12 2022

type: SRA

city: Suwon

first: Hyun Goo

last: Woo

address: 164 Worldcup-ro Yeongtong-gu

country: South Korea

institute: Ajou University School of Medicine

description: Liver cancer

library_source: transcriptomic

data_processing:
The low quality sequence reads with less than 30 PHRED score and adapter sequence reads were trimmed using a Trim Galore tool
Sequence reads were mapped to the human reference genome (hg38) using TopHat2 tool with default parameters
RNA abundance was estimated by as the FPKM values according to GENCODE database (version 27) using Cufflinks tool
Genome_build: GRCh38
Supplementary_files_format_and_content: Tab-delimited text files include log2(FPKM+1) values for each sample
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

molecule: total RNA

organism: Homo sapiens

source_name: Hepatocellular carcinoma

extract_protocol:
Total RNA was extracted from each sample using the RNeasy total RNA extraction kit (Qiagen) according to manufacturer’s instruction
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: tissue

value: Liver

tag: molecular subtype

tag: disease state

value: HCC


title: YSH026

description: Liver cancer


title: nasal_prox1_936

city: Daejeon

first: Myung Jin

last: Yang

institute: Institute for Basic Science

description: Nasal Prox1+ cells

library_source: transcriptomic single cell

data_processing:
Demultiplexed fastq files were aligned to mm10 mouse reference genome by STAR aligner.
Raw read count matrix were made by featureCounts from Subread package
Raw read count matrix were read by Seurat (v3.1.1). Then, low quality cells (expressing less than 1000 genes), potential dead cells (>10% mitochondrial gene percentage) and contaminating Prox1- cells were removed for EC datasets. Also, genes that are only expressed in less than 3 cells were discarded.
After quality control. Matrices were log normalized and variables such as number of UMIs and mitochondrial gene percentage were regressed out and scaled with Seurat to produce processed data files.
Dimensionality reduction, clustering and differential expression testing were performed using R package Seurat
Assembly: mm10
Supplementary files format and content: Cell-gene expression matrix of log normalized UMI counts for nasal Prox1+ cells from Prox1-GFP mouse

organism: Mus musculus

source_name: Nasal Prox1+ cells

growth_protocol: Smart-Seq3 single-cell RNA libraries

extract_protocol:
FACS sorted nasal Prox1+ cells were processed by Smart-Seq3 protocol
Libraries were generated following Smart-Seq3 protocol (Hagemann-Jensen M et al.,Single-cell RNA counting at allele and isoform resolution using Smartseq3. Nat Biotechnol 2020)

tag: cell type

value: Nasal Prox1+ cells

tag: strain

value: FVB


title: YSH052

description: Liver cancer


title: nasal_prox1_851

description: Nasal Prox1+ cells


title: nasal_prox1_850

description: Nasal Prox1+ cells


title: nasal_prox1_848

description: Nasal Prox1+ cells


title: nasal_prox1_849

description: Nasal Prox1+ cells


title: GC0713574_S291

city: Bethesda

first: Keji

last: Zhao

state: MD

address: Building 10 Room 7B06A

department: National Heart, Lung, and Blood Institute

country: USA

institute: national Institute of Health

description:
genomic DNA and RNA
scPCOR-seq

library_source: genomic

data_processing:
Library strategy: scPCOR-seq
Basecalls performed
Pairs of reads were considered to be valid if read2 contain the exact linker sequences “AGAACCATGTCGTCAGTGT”.  The valid pairs of read will be further separated into either RNA part or chromatin occupancy part. If the linker sequences “GAGCG” for not-so-random primers or the linker sequences “CCTGCAGG” for oligodT were found in the location within 7-11th and 7- 14th base of read1, the pair of reads were belonged to RNA. The remaining valid pairs were belonged to chromatin occupancy. Using the information of the cell barcodes located at 5’ of read 2, both pairs of reads belonging to RNA and chromatin occupancy were separated into 96 sets of FASTQ files, respectively. The 96 pairs are shown in barcode_96.txt.  Reads were mapped to the human reference genome hg19 using Bowtie2 Duplicates using different trimming parameters. Finally, the mapping results were combined, and Duplicated reads were removed based on mapping position and UMI for the reads belonging to chromatin occupancy.
The top 30 barcodes are selected from each well based on read count, so 30 nuclei are sorted for each well with doublets removed, where the number removed was calculated based on the collision rate like in (Science. 2015 May 22; 348(6237): 910–914). These are denoted as single cells because of the low likelihood of two cells in the same well having the same barcode. We required that qualifying cells have more than 1000 reads. With these requirements, 2347 cells were obtained . For each cell, we calculated the RNA and PolII reads that were located within the gene body and stored the results in a matrix, which can be found from the file “RNA_count.txt.gz” and “POlII count.txt.gz”
Genome_build: hg19
Supplementary_files_format_and_content: barcode_96.txt: one column  refers to a DNA barcode starting from the 3' .
Supplementary_files_format_and_content: RNA_count.txt.gz: This file contains read count data for single cells in text format.  First column) Transcript ID, Second column) Chromosome, Third column) Start, Fourth column) End, Fifth column) Strand, Sixth column) RNA length, Seventh column) copies of transcript annotation in the genome, Eighth column) annotation information, other columns) readcount. The rows refer to genes. Reading the matrix results in a 65572 x 2355 matrix.
Supplementary_files_format_and_content: PolII_count.txt.gz: This file contains normalized read count data for single cells in text format. The rows refer to genes while the column refer to single cells. Reading the matrix results in a 68987 x 2348 matrix.

molecule: other

source_name: 293T and H1 cells

extract_protocol:
The fixed cells were thawed on ice. To prepare PA-MNase and antibody complex, 1 μl antibody and 3 μl PA-MNase were pre-incubated on ice in 4 μl antibody binding buffer (10 mM Tris-Cl (pH 7.5), 1 mM EDTA, 150 mM sodium chloride, 0.1% Triton X-100) for 30 min. Meanwhile, H1 fixed cells (1 million) and HEK 293T fixed cells (1 million) were resuspended in 100 μl antibody binding buffer. Then, cell suspension was added to the PA-MNase and antibody complex, incubated on ice for 1 hour. Cells were washed three times with high salt buffer (10 mM Tris-Cl (pH 7.5), 1 mM EDTA, 400 mM sodium chloride and 1% (v/v) Triton X-100), followed by washing once with rinsing buffer (10 mM Tris pH7.5, 10 mM sodium chloride and 0.1% (v/v) Triton X-100). Then the cells were resuspended in 40 μl reaction solution buffer (10 mM Tris-Cl (pH 7.4), 10 mM sodium chloride, 0.1% (v/v) Triton X-100, 2 mM CaCl2), incubated at 37°C for 3min in water bath. The reaction was stopped by adding 4.4 μl 100mM EGTA. After washing twice with rinsing buffer, the cells were end-repaired by T4 Polynucleotide Kinase (PNK) in 150 μl reaction buffer (1 x PNK buffer, 1mM ATP, 150 unites PNK) at 37°C for 30min, followed by washing twice with rinsing buffer to stop the reaction.The cells were resuspended in 25 μl reverse transcription buffer (5 μl 10 x Maxima H Minus reverse transcription buffer, 1.25 μl 10% NP40, 16.75 μl H2O, 1 μl 100 μm not-so-random primer, 1 μl 10ng/μl Oligo dT22 primer (NNNNNNGAGCGTTTTTTTTTTTTTTTTTTTTTTVN)). After incubated at 65°C for 1min, the reaction was immediately put on ice, while the enzyme mix is prepared (8.75 μl H2O, 5 μl 10 x Maxima H Minus reverse transcription buffer, 8 μl 10 mM dNTPs, 2 μl Maxima H Minus reverse transcriptase, 0.625 μl SUPERase• In™ RNase Inhibitor, 0.625 μl RNaseOUT™ Recombinant Ribonuclease Inhibitor) and added into the reaction. The reverse transcription is performed as described in [15] (50 °C × 10 min; 3 cycles for the following: 8°C × 12s, 15°C × 45s, 20°C × 45s, 30°C × 30s, 42°C × 2min, 50°C × 5 min; 50 °C × 10 min and hold at 4 °C). The cells were washed twice with rinsing buffer, resuspended in 50 μl reaction buffer (5 μl 10 × Exo I buffer, 1 μl Exo I, 44 μl H2O) and incubated at 37°C for 20min. This is to remove the excess primers left after reverse transcription. After digestion, the cells were washed twice with rinsing buffer to stop the reaction.
96 barcode-P7 adaptors (10 μM) stored in a 96 well plate were thawed at 4 °C, then 1 μl of each was added to the corresponding well in a new 96 well plate with multichannel pipette. Downstream library construction was performed as described previously. Briefly, the cells were suspended with nuclei suspension buffer and mixed with enzyme dilution buffer, followed by aliquoted into 10 μl in 96 wells, mixing with the added barcode-P7 adaptors. The plate was sealed completely and incubated at 37°C for 60min. After incubation, the cells were pooled together in a solution trough containing 500 μl stop buffer, resuspended with 800 μl 1× PBS and send to flow cytometry core. 30 cells were sorted in each well of a new 96 well plate which contain 13 μl buffer mixture per well (3 μl reverse-crosslink buffer, 10 μl PBS containing 0.1% NP40). The plate was sealed completely and incubated at 65°C for 6 hours and 80°C for 10 min. After reverse crosslink, indexed PCR1 was performed by adding 13 μl 2x Phusion® High-Fidelity PCR Master Mix with HF Buffer (New England BioLabs) and 1 μl 2 μM index primer with the following condition: 98 °C 3 min, 12 cycles of 65 °C 30s, 72 °C 30s, followed by 72 °C 5 min. Then the libraries were pooled together, digested with Exo I and purified by MinElute® Reaction Cleanup Kit (Qiagen). Downstream A-tailing and P5 adaptor ligation were performed as described previously. PCR2 amplification with i5 index primer and P7-cs2 primer was set in the following condition:  98 °C 3 min, 57 °C 3 min, 72 °C 1 min, 7 cycles of 98 °C 10s, 65 °C 15s, 72 °C 30s, followed by 72 °C 5 min. The PCR products were run on the 2% E-Gel® EX Agarose Gel (Invitrogen). The fragments between 250–600 base pair (bp) were isolated and purified by the MinElute Gel Extraction Kit (Qiagen). The concentration of the library was measured by Qubit dsDNA HS kit (Thermo Fisher Scientific). The paired-end sequencing was performed on Illumina Hiseq 2500

tag: cell lines

value: 293T and H1 cells


title: GC0713575_S292

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713576_S293

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_847

description: Nasal Prox1+ cells


title: GC0713572_S289

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713571_S288

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_856

description: Nasal Prox1+ cells


title: YSH050

description: Liver cancer


title: nasal_prox1_844

description: Nasal Prox1+ cells


title: GC0713570_S287

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_846

description: Nasal Prox1+ cells


title: GC0713569_S286

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_843

description: Nasal Prox1+ cells


title: nasal_prox1_842

description: Nasal Prox1+ cells


title: nasal_prox1_845

description: Nasal Prox1+ cells


title: GC0713568_S285

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713567_S284

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_840

description: Nasal Prox1+ cells


title: nasal_prox1_841

description: Nasal Prox1+ cells


title: nasal_prox1_839

description: Nasal Prox1+ cells


title: GC0713565_S282

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713573_S290

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_838

description: Nasal Prox1+ cells


title: GC0713564_S281

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713566_S283

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_837

description: Nasal Prox1+ cells


title: GC0713562_S279

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713560_S277

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713561_S278

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_836

description: Nasal Prox1+ cells


title: nasal_prox1_834

description: Nasal Prox1+ cells


title: nasal_prox1_833

description: Nasal Prox1+ cells


title: nasal_prox1_835

description: Nasal Prox1+ cells


title: nasal_prox1_832

description: Nasal Prox1+ cells


title: GC0713558_S275

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713557_S274

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713563_S280

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713559_S276

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_830

description: Nasal Prox1+ cells


title: nasal_prox1_829

description: Nasal Prox1+ cells


title: GC0713556_S273

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713554_S271

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713555_S272

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713553_S270

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713552_S269

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_828

description: Nasal Prox1+ cells


title: GC0713549_S266

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713550_S267

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713551_S268

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_825

description: Nasal Prox1+ cells


title: nasal_prox1_831

description: Nasal Prox1+ cells


title: nasal_prox1_821

description: Nasal Prox1+ cells


title: GC0713547_S264

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_826

description: Nasal Prox1+ cells


title: GC0713548_S265

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_819

description: Nasal Prox1+ cells


title: GC0713544_S261

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_824

description: Nasal Prox1+ cells


title: nasal_prox1_823

description: Nasal Prox1+ cells


title: nasal_prox1_827

description: Nasal Prox1+ cells


title: nasal_prox1_818

description: Nasal Prox1+ cells


title: nasal_prox1_820

description: Nasal Prox1+ cells


title: GC0713543_S260

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_815

description: Nasal Prox1+ cells


title: nasal_prox1_822

description: Nasal Prox1+ cells


title: GC0713539_S256

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713542_S259

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_817

description: Nasal Prox1+ cells


title: GC0713546_S263

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713545_S262

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_816

description: Nasal Prox1+ cells


title: nasal_prox1_812

description: Nasal Prox1+ cells


title: GC0713540_S257

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713541_S258

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713537_S254

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_813

description: Nasal Prox1+ cells


title: GC0713535_S252

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_811

description: Nasal Prox1+ cells


title: nasal_prox1_810

description: Nasal Prox1+ cells


title: GC0713538_S255

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713533_S250

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713534_S251

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713532_S249

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713531_S248

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_808

description: Nasal Prox1+ cells


title: nasal_prox1_805

description: Nasal Prox1+ cells


title: nasal_prox1_809

description: Nasal Prox1+ cells


title: GC0713530_S247

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_814

description: Nasal Prox1+ cells


title: GC0713529_S246

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713536_S253

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713528_S245

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_803

description: Nasal Prox1+ cells


title: nasal_prox1_806

description: Nasal Prox1+ cells


title: nasal_prox1_807

description: Nasal Prox1+ cells


title: nasal_prox1_802

description: Nasal Prox1+ cells


title: nasal_prox1_801

description: Nasal Prox1+ cells


title: GC0713527_S244

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713524_S241

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713526_S243

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713525_S242

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_800

description: Nasal Prox1+ cells


title: nasal_prox1_799

description: Nasal Prox1+ cells


title: GC0713523_S240

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713522_S239

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_797

description: Nasal Prox1+ cells


title: GC0713521_S238

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713520_S237

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_795

description: Nasal Prox1+ cells


title: GC0713518_S235

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713519_S236

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_794

description: Nasal Prox1+ cells


title: nasal_prox1_793

description: Nasal Prox1+ cells


title: GC0713517_S234

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_790

description: Nasal Prox1+ cells


title: nasal_prox1_792

description: Nasal Prox1+ cells


title: GC0713516_S233

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_804

description: Nasal Prox1+ cells


title: nasal_prox1_789

description: Nasal Prox1+ cells


title: GC0713515_S232

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713513_S230

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713514_S231

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_788

description: Nasal Prox1+ cells


title: GC0713512_S229

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_787

description: Nasal Prox1+ cells


title: nasal_prox1_798

description: Nasal Prox1+ cells


title: nasal_prox1_796

description: Nasal Prox1+ cells


title: nasal_prox1_786

description: Nasal Prox1+ cells


title: nasal_prox1_784

description: Nasal Prox1+ cells


title: nasal_prox1_783

description: Nasal Prox1+ cells


title: GC0713511_S228

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_785

description: Nasal Prox1+ cells


title: GC0713509_S226

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713510_S227

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_791

description: Nasal Prox1+ cells


title: nasal_prox1_782

description: Nasal Prox1+ cells


title: GC0713508_S225

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_781

description: Nasal Prox1+ cells


title: GC0713507_S224

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_778

description: Nasal Prox1+ cells


title: nasal_prox1_777

description: Nasal Prox1+ cells


title: nasal_prox1_779

description: Nasal Prox1+ cells


title: GC0713506_S223

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713505_S222

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_780

description: Nasal Prox1+ cells


title: GC0713503_S220

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713502_S219

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_776

description: Nasal Prox1+ cells


title: nasal_prox1_775

description: Nasal Prox1+ cells


title: GC0713500_S217

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713504_S221

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_774

description: Nasal Prox1+ cells


title: GC0713497_S214

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713501_S218

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713496_S213

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713498_S215

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713495_S212

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713493_S210

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713494_S211

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_772

description: Nasal Prox1+ cells


title: nasal_prox1_769

description: Nasal Prox1+ cells


title: nasal_prox1_767

description: Nasal Prox1+ cells


title: nasal_prox1_768

description: Nasal Prox1+ cells


title: nasal_prox1_773

description: Nasal Prox1+ cells


title: GC0713499_S216

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713490_S207

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713491_S208

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_766

description: Nasal Prox1+ cells


title: GC0713489_S206

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_763

description: Nasal Prox1+ cells


title: nasal_prox1_764

description: Nasal Prox1+ cells


title: nasal_prox1_771

description: Nasal Prox1+ cells


title: nasal_prox1_770

description: Nasal Prox1+ cells


title: GC0713487_S204

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_762

description: Nasal Prox1+ cells


title: GC0713483_S200

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713492_S209

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_758

description: Nasal Prox1+ cells


title: nasal_prox1_759

description: Nasal Prox1+ cells


title: GC0713486_S203

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_757

description: Nasal Prox1+ cells


title: nasal_prox1_760

description: Nasal Prox1+ cells


title: nasal_prox1_761

description: Nasal Prox1+ cells


title: GC0713484_S201

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_754

description: Nasal Prox1+ cells


title: GC0713488_S205

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_756

description: Nasal Prox1+ cells


title: GC0713482_S199

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713485_S202

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713479_S196

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713478_S195

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_755

description: Nasal Prox1+ cells


title: GC0713481_S198

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_753

description: Nasal Prox1+ cells


title: nasal_prox1_765

description: Nasal Prox1+ cells


title: GC0713477_S194

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_751

description: Nasal Prox1+ cells


title: nasal_prox1_752

description: Nasal Prox1+ cells


title: nasal_prox1_750

description: Nasal Prox1+ cells


title: nasal_prox1_748

description: Nasal Prox1+ cells


title: GC0713476_S193

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713480_S197

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_745

description: Nasal Prox1+ cells


title: GC0713470_S187

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713473_S190

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713471_S188

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713474_S191

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713472_S189

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_749

description: Nasal Prox1+ cells


title: nasal_prox1_743

description: Nasal Prox1+ cells


title: nasal_prox1_744

description: Nasal Prox1+ cells


title: nasal_prox1_747

description: Nasal Prox1+ cells


title: GC0713468_S185

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713469_S186

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_742

description: Nasal Prox1+ cells


title: nasal_prox1_739

description: Nasal Prox1+ cells


title: GC0713466_S183

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_741

description: Nasal Prox1+ cells


title: GC0713465_S182

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713475_S192

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713467_S184

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_738

description: Nasal Prox1+ cells


title: nasal_prox1_740

description: Nasal Prox1+ cells


title: nasal_prox1_737

description: Nasal Prox1+ cells


title: nasal_prox1_736

description: Nasal Prox1+ cells


title: nasal_prox1_746

description: Nasal Prox1+ cells


title: nasal_prox1_735

description: Nasal Prox1+ cells


title: GC0713463_S180

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_734

description: Nasal Prox1+ cells


title: GC0713457_S174

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_733

description: Nasal Prox1+ cells


title: GC0713456_S173

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_732

description: Nasal Prox1+ cells


title: GC0713458_S175

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713459_S176

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713460_S177

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713461_S178

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713455_S172

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713464_S181

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713462_S179

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_726

description: Nasal Prox1+ cells


title: nasal_prox1_728

description: Nasal Prox1+ cells


title: nasal_prox1_730

description: Nasal Prox1+ cells


title: nasal_prox1_731

description: Nasal Prox1+ cells


title: nasal_prox1_724

description: Nasal Prox1+ cells


title: nasal_prox1_723

description: Nasal Prox1+ cells


title: GC0713448_S165

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713454_S171

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713447_S164

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713452_S169

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713451_S168

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713450_S167

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713449_S166

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_729

description: Nasal Prox1+ cells


title: nasal_prox1_722

description: Nasal Prox1+ cells


title: nasal_prox1_720

description: Nasal Prox1+ cells


title: nasal_prox1_721

description: Nasal Prox1+ cells


title: nasal_prox1_719

description: Nasal Prox1+ cells


title: GC0713446_S163

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713445_S162

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713453_S170

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_727

description: Nasal Prox1+ cells


title: Formed

city: New Orleans

first: Alejandra

last: Martinez Lege

state: United States

address: 1430 Tulane Ave

department: Neurosurgery

institute: Tulane University

description: scRNA-seq

data_processing:
10x Cell Ranger V.4.0 was used to generate Fastq files, perform alignment,filtering,barcode counting,UMI counting and aggregation.
Seurat V.4.02 for scRNA-seq
Genome_build: mm10
Supplementary_files_format_and_content: H5 file filtered-gene-barcode-matrix can be deconvoluted to tsv and mtx files

source_name: Circle of Willis

extract_protocol:
total RNA
Libraries were prepared from individual cells using the droplet-based method as was outlined by 10x Genomics. Indexed libraries were sequenced on a NextSeq 2000 (Illumina) sequencer using P3 flow cell
v3.chemistry 10X Genomics

value: vessels from circle of Willis

tag: age

value: 8 weeks

tag: genotype

value: wild type


title: Ruptured

description: scRNA-seq


title: nasal_prox1_718

description: Nasal Prox1+ cells


title: GC0713443_S160

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_717

description: Nasal Prox1+ cells


title: GC0713444_S161

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_725

description: Nasal Prox1+ cells


title: nasal_prox1_716

description: Nasal Prox1+ cells


title: Sham

description: scRNA-seq


title: nasal_prox1_715

description: Nasal Prox1+ cells


title: nasal_prox1_714

description: Nasal Prox1+ cells


title: nasal_prox1_713

description: Nasal Prox1+ cells


title: GC0713442_S159

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_711

description: Nasal Prox1+ cells


title: nasal_prox1_712

description: Nasal Prox1+ cells


title: nasal_prox1_710

description: Nasal Prox1+ cells


title: nasal_prox1_709

description: Nasal Prox1+ cells


title: nasal_prox1_704

description: Nasal Prox1+ cells


title: nasal_prox1_708

description: Nasal Prox1+ cells


title: nasal_prox1_705

description: Nasal Prox1+ cells


title: P38i_K27_2

city: Ann Arbor

first: Bioinformatics

last: Core

state: MI

address: BRCF Bioinformatics Core, 2800 Plymouth Rd

institute: University of Michigan

data_processing:
We use FastQC (FastQC) (v0.11.8) to assess the overall quality of each sequenced sample.
We use TrimGalore (TrimGalore) (v0.4.5) and cutadapt (Martin) (v1.15) with the following parameters: –nextera -e 0.1 –stringency 6 –length 20 –nextseq 20.
We align trimmed reads to hg38 with Bowtie2 (Langmead and Salzberg, 2012) (v2.3.4.1) using default parameters with the exception of the following flags: -X 2000.
Duplicate reads are marked with Picard (Picard) (v2.20.2).
Alignments are filtered with samtools (Li et al., 2009) (v1.2) using the flags: -F4 -F8 -f3 -q10 -F1024.
Alignments completely overlapping blacklisted regions (ENCODE Blacklist Regions) are removed with bedtools (Quinlan and Hall, 2010) (v2.28.0).
Sample-wise peaks are called with epic2 (Stovner and Sætrom, 2019), a re-implementation of SICER (Zang et al., 2009), with flags: –false-discovery-rate-cutoff 0.05 –effective-genome-fraction 0.95 –guess-bampe.
Assembly: hg38
Supplementary files format and content: bigWig
Supplementary files format and content: BED (does not apply to IgG samples)

molecule: genomic DNA

growth_protocol: MDAMB231 cells were growth in  10% fetal bovine serum, 2mM glutamine, 1x penicillin/streptomycin. Cells were cultured at 37C at 5% CO2.

extract_protocol:
Cells were fixed with 1% formaldehyde, quenched with glycine, and frozen as a pellet. A total of 1 million cells per condition was used. We used the Diagenode ChIPmentation kit with dual indices, and followed the manufacturer’s protocol. Briefly, the cells were lysed and resuspended in 130ul of chromatin shearing. Shearing was done in a Covaris S2 instrument. A 15ul aliquot of the sheared chromatin was taken for assessment of the shearing size. The remaining sheared chromatin split for immunoprecipitation in the presence of H3K27me3 antibody (purchased Cell Signaling, provided by the investigator) and IgG as input. Four ug of each antibody was used per immunoprecipitation. Immunoprecipitation was done overnight at 4C with rotation. The immunoprecipitates were next washed before on-bead tagmentation at 37C for 10 minutes with agitation. The reaction was stopped by putting the samples on ice and additional washes, before processing for stripping, end filling and reverse crosslinking. qPCR was used to determine the optimal cycle number for enrichment PCR, according to the manufacturer’s protocol. The final amplified libraries were cleaned using AMPure XP beads at a 1.8:1 bead:DNA ratio, quantitated with Qubit HS dsDNA, and fragment size assessed on a TapeStation HS D1000 kit. The libraries were qPCR quantitated for pooling using the KAPA Illumina qPCR quantitation kit, and sequenced PE-50 on two NextSeq2000 P2 flow cells at the UM Advanced Genomics Core.
ChIPmentation

tag: chip antibody

value: H3K27me3 (Cell Signaling C36B11 #9733, Lot 16 )

tag: cell line

value: triple-negative breast cancer (TNBC) cell

tag: treatment


title: GC0713440_S157

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_706

description: Nasal Prox1+ cells


title: P38i_IgG_4

value: IgG (Diagenode RIG001)


title: nasal_prox1_707

description: Nasal Prox1+ cells


title: P38i_K27_3


title: P38i_K27_4


title: nasal_prox1_703

description: Nasal Prox1+ cells


title: nasal_prox1_701

description: Nasal Prox1+ cells


title: nasal_prox1_702

description: Nasal Prox1+ cells


title: P38i_K27_1


title: GC0713439_S156

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713438_S155

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713441_S158

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713437_S154

description:
genomic DNA and RNA
scPCOR-seq


title: P38i_IgG_2


title: nasal_prox1_700

description: Nasal Prox1+ cells


title: GC0713436_S153

description:
genomic DNA and RNA
scPCOR-seq


title: P38i_IgG_1


title: EP7_K27_4

value: EPZ


title: P38i_IgG_3


title: GC0713433_S150

description:
genomic DNA and RNA
scPCOR-seq


title: EP7_K27_3


title: nasal_prox1_699

description: Nasal Prox1+ cells


title: EP7_K27_2


title: GC0713434_S151

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_691

description: Nasal Prox1+ cells


title: nasal_prox1_690

description: Nasal Prox1+ cells


title: GC0713435_S152

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_688

description: Nasal Prox1+ cells


title: nasal_prox1_696

description: Nasal Prox1+ cells


title: nasal_prox1_694

description: Nasal Prox1+ cells


title: nasal_prox1_689

description: Nasal Prox1+ cells


title: nasal_prox1_685

description: Nasal Prox1+ cells


title: nasal_prox1_692

description: Nasal Prox1+ cells


title: GC0713427_S144

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713430_S147

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_695

description: Nasal Prox1+ cells


title: nasal_prox1_686

description: Nasal Prox1+ cells


title: nasal_prox1_697

description: Nasal Prox1+ cells


title: nasal_prox1_698

description: Nasal Prox1+ cells


title: GC0713429_S146

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713428_S145

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713432_S149

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_682

description: Nasal Prox1+ cells


title: GC0713431_S148

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713426_S143

description:
genomic DNA and RNA
scPCOR-seq


title: EP7_IgG_1


title: nasal_prox1_683

description: Nasal Prox1+ cells


title: EP7_IgG_4


title: Control_K27_4


title: nasal_prox1_693

description: Nasal Prox1+ cells


title: EP7_K27_1


title: nasal_prox1_681

description: Nasal Prox1+ cells


title: EP7_IgG_3


title: nasal_prox1_687

description: Nasal Prox1+ cells


title: EP7_IgG_2


title: nasal_prox1_679

description: Nasal Prox1+ cells


title: GC0713425_S142

description:
genomic DNA and RNA
scPCOR-seq


title: Control_K27_3


title: nasal_prox1_680

description: Nasal Prox1+ cells


title: nasal_prox1_684

description: Nasal Prox1+ cells


title: GC0713424_S141

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_676

description: Nasal Prox1+ cells


title: nasal_prox1_678

description: Nasal Prox1+ cells


title: GC0713423_S140

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_677

description: Nasal Prox1+ cells


title: nasal_prox1_675

description: Nasal Prox1+ cells


title: Control_IgG_4


title: nasal_prox1_673

description: Nasal Prox1+ cells


title: Control_K27_2


title: Control_K27_1


title: nasal_prox1_671

description: Nasal Prox1+ cells


title: nasal_prox1_672

description: Nasal Prox1+ cells


title: nasal_prox1_669

description: Nasal Prox1+ cells


title: nasal_prox1_670

description: Nasal Prox1+ cells


title: nasal_prox1_667

description: Nasal Prox1+ cells


title: nasal_prox1_674

description: Nasal Prox1+ cells


title: GC0713420_S137

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713422_S139

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713419_S136

description:
genomic DNA and RNA
scPCOR-seq


title: Control_IgG_2


title: GC0713417_S134

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713418_S135

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_666

description: Nasal Prox1+ cells


title: Combo_K27_4

value: Combo (EPZ + P38i)


title: nasal_prox1_664

description: Nasal Prox1+ cells


title: GC0713416_S133

description:
genomic DNA and RNA
scPCOR-seq


title: Combo_K27_3


title: nasal_prox1_662

description: Nasal Prox1+ cells


title: GC0713415_S132

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_661

description: Nasal Prox1+ cells


title: nasal_prox1_659

description: Nasal Prox1+ cells


title: Control_IgG_3


title: GC0713421_S138

description:
genomic DNA and RNA
scPCOR-seq


title: Control_IgG_1


title: nasal_prox1_665

description: Nasal Prox1+ cells


title: nasal_prox1_655

description: Nasal Prox1+ cells


title: Combo_K27_2


title: nasal_prox1_657

description: Nasal Prox1+ cells


title: Combo_IgG_3


title: nasal_prox1_658

description: Nasal Prox1+ cells


title: nasal_prox1_660

description: Nasal Prox1+ cells


title: nasal_prox1_668

description: Nasal Prox1+ cells


title: GC0713412_S129

description:
genomic DNA and RNA
scPCOR-seq


title: Combo_IgG_4


title: Combo_K27_1


title: GC0713413_S130

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_656

description: Nasal Prox1+ cells


title: nasal_prox1_663

description: Nasal Prox1+ cells


title: nasal_prox1_652

description: Nasal Prox1+ cells


title: nasal_prox1_651

description: Nasal Prox1+ cells


title: GC0713414_S131

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_650

description: Nasal Prox1+ cells


title: nasal_prox1_648

description: Nasal Prox1+ cells


title: nasal_prox1_653

description: Nasal Prox1+ cells


title: Combo_IgG_2


title: nasal_prox1_654

description: Nasal Prox1+ cells


title: nasal_prox1_646

description: Nasal Prox1+ cells


title: stage III, Exp #3, cell lineage

city: Shanghai

first: Zhiwen

last: You

address: 320 Yueyang Road

department: Institute of Neuroscience

country: China

institute: Chinese Academy of Sciences

description: Cell lineage barcode

library_source: other

data_processing:
scRNA-seq data were aligned with the human reference genome, GRCh38-3.0.0, and demultiplexed using the default parameters of Cellranger software (10x Genomics, v3.0.2 or v4.0.0). Obtained filtered count matrix was used for downstream analysis.The filtered count matrix was analyzed and processed using Seurat (v3.1.4) and Scanpy (v3.0.46), including data filtering, normalization, highly variable genes selection, scaling, dimension reduction, and clustering.
Assembly: GRCh38-3.0.0
Supplementary files format and content: Tab-separated values files and matrix files

extract_protocol:
For scRNA-seq, the neuro-spheres were digested by TrypLE Enzyme at 37℃ for 10 minutes and dissociated into single cells. After 35-µm cell sieve filtering, the digested cells were sorted by FACS to collected EGFP-positive cells, which were then concentrated by centrifuge at 400 g for 5 minutes. All the sorted EGFP-positive cells were used to construct single cell library using Chromium Single Cell 3' Reagent Kits (v2 and v3) following the manufacturer’s guidelines (10X Genomics).
scRNA-seq library was performed according to the manufacter’s instructions (single cell 3’ v2 and v3 protocol, 10x Genomics). Briefly, GCs were resuspended in the master mix and loaded together with partitioning oil and gel beads into the chip to generate the gel bead-in-emulsion (GEM). The poly-A RNA from the cell lysate contained in every single GEM was retrotranscripted to cDNA, which contains an Ilumina R1 primer sequence, Unique Molecular Identifier (UMI) and the 10x Barcode. The pooled barcoded cDNA was then cleaned up with Silane DynaBeads, amplified by PCR and the apropiated sized fragments were selected with SPRIselect reagent for subsequent library construction. During the library construction Ilumina R2 primer sequence, paired-end constructs with P5 and P7 sequences and a sample index were added. For barcoded viral library, we designed primer pairs with illumina adaptors to amplify the random barcode sequences from the retroviral barcode library plasmid pool (Forward, AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTTATTCGGAGGACGACCCTATTTG; Reverse, CAAGCAGAAGACGGCATACGAGATAGGATTCGGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGGATCACTCTCGGCATGGACG) with the following PCR program: 1, 98 °C, 3 min; 2, 98 °C, 10 s; 3, 60 °C, 10 s; 4, 72 °C, 25 s; 5, repeat steps 2–4 15 times; 6, 72 °C, 3 min; 7, 4 °C, hold. The PCR products were purified by 0.85× left-sided size selection using Ampure XP bead (Beckman Coulter, catalogue number A63880) and then sequenced on Illumina HiSeq PE150. For cell lineage barcode recovered from single cell transcriptome, following the reverse transcription of mRNA and first strand cDNA amplification, 50 ng of the unfragmented cDNA libraries were used as templates to specifically amplify cell barcodes and virus barcodes with primers pairs: AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTC and CAAGCAGAAGACGGCATACGAGATAGGATTCGGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGGCATGGACGAGCTGTACAAATAA, using the following program: 1, 98 °C, 3 min; 2, 98 °C, 10 s; 3, 60 °C, 15 s; 4, 72 °C, 1 min; 5, repeat steps 2–4 20 times; 6, 72 °C, 3 min; 7, 4 °C, hold. The PCR products were then purified by 0.8-0.6× dual-sided size selection using Ampure XP bead and sequenced using Illumina HiSeq PE150.

value: H9-derive neural progenitors

value: WT

value: stage III (day 30)


title: stage III, Exp #2, cell lineage

description: Cell lineage barcode


title: GC0713411_S128

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_645

description: Nasal Prox1+ cells


title: GC0713410_S127

description:
genomic DNA and RNA
scPCOR-seq


title: Combo_IgG_1


title: GC0713407_S124

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713406_S123

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713409_S126

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713405_S122

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_640

description: Nasal Prox1+ cells


title: stage I, Exp #1, cell lineage

description: Cell lineage barcode

value: stage I (day 13)


title: stage IV, Exp #3, cell lineage

description: Cell lineage barcode

value: stage IV (day 45)


title: nasal_prox1_647

description: Nasal Prox1+ cells


title: GC0713408_S125

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713403_S120

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_644

description: Nasal Prox1+ cells


title: nasal_prox1_636

description: Nasal Prox1+ cells


title: nasal_prox1_637

description: Nasal Prox1+ cells


title: nasal_prox1_634

description: Nasal Prox1+ cells


title: nasal_prox1_641

description: Nasal Prox1+ cells


title: GC0713401_S118

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_632

description: Nasal Prox1+ cells


title: stage II, Exp #2, cell lineage

description: Cell lineage barcode

value: stage II (day 21)


title: nasal_prox1_633

description: Nasal Prox1+ cells

value: Nasal Prox1+ cells


title: nasal_prox1_643

description: Nasal Prox1+ cells

value: FVB


title: stage IV, Exp #3, scRNAseq

description: 10x Genomics


title: stage III, Exp #3, scRNAseq

description: 10x Genomics


title: stage II, Exp #1, scRNAseq

description: 10x Genomics


title: nasal_prox1_642

description: Nasal Prox1+ cells


title: stage II, Exp #1, cell lineage

description: Cell lineage barcode


title: GC0713399_S116

description:
genomic DNA and RNA
scPCOR-seq

value: 293T and H1 cells


title: nasal_prox1_649

description: Nasal Prox1+ cells


title: GC0713404_S121

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713398_S115

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_626

description: Nasal Prox1+ cells


title: nasal_prox1_627

description: Nasal Prox1+ cells


title: nasal_prox1_625

description: Nasal Prox1+ cells


title: GC0713400_S117

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_631

description: Nasal Prox1+ cells


title: nasal_prox1_624

description: Nasal Prox1+ cells


title: female_2_nasal_ec

description: human Nasal EC

data_processing:
Cell Ranger (v3.0.0) was used to process single cell 3' RNA-seq ouput. First, cell ranger mkfastq demultiplexed illumina BCLs into fastq files.
Then, using cell ranger count, reads were aligned to GRCh38 human reference genome.
Aligned reads were then read by Seurat (v3.1.1) and cell-gene raw expression matrices were made. Then, low quality cells (expressing less than 1000 genes), potential dead cells (>10% mitochondrial gene percentage) and contaminating CD31- cells were removed. Also, genes that are only expressed in less than 3 cells were discarded.
Expression matrices were made after quality control. Matrices were log normalized and variables such as number of UMIs and mitochondrial gene percentage were regressed out and scaled with Seurat to produce processed data files.
Dimensionality reduction, clustering and differential expression testing were performed using R package Seurat
Assembly: GRCh38
Supplementary files format and content: Cell-gene expression matrix of log normalized UMI counts for human nasal ECs

source_name: nasal endothelial cells (EC)s

extract_protocol:
FACS sorted endothelial cells were processed on the 10X chromium system following the manufacturer's protocols
Using 10x single cell RNA sequencing 3' NEXT GEM v3.1 reagent Kit (10X genomics), cDNA libraries were constructed

value: nasal endothelial cells (EC)s

tag: Sex

value: female


title: nasal_prox1_638

description: Nasal Prox1+ cells


title: GC0713402_S119

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713396_S113

description:
genomic DNA and RNA
scPCOR-seq


title: stage III, Exp #2, scRNAseq

description: 10x Genomics


title: male_1_nasal_ec

description: human Nasal EC

growth_protocol: 10x single cell RNA sequencing 3' NEXT GEM v3.1

value: male


title: nasal_prox1_621

description: Nasal Prox1+ cells


title: nasal_prox1_639

description: Nasal Prox1+ cells


title: stage II, Exp #2, scRNAseq

description: 10x Genomics


title: nasal_prox1_628

description: Nasal Prox1+ cells


title: nasal_prox1_629

description: Nasal Prox1+ cells


title: nasal_prox1_618

description: Nasal Prox1+ cells


title: GC0713394_S111

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_630

description: Nasal Prox1+ cells


title: nasal_prox1_617

description: Nasal Prox1+ cells


title: GC0713393_S110

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_616

description: Nasal Prox1+ cells


title: stage I, Exp #1, scRNAseq

description: 10x Genomics


title: nasal_prox1_614

description: Nasal Prox1+ cells


title: NC_PKU-34

city: Beijing

first: Zhi

middle: John

last: Lu

address: Shuangqing Road

department: School of Life Sciences

institute: Tsinghua University

description:
cell-free RNA
RNA-seq of homo sapiens: Healthy donor's plasma; Provided by Peking University First Affiliated Hospital; Constructed by SMARTer Stranded Total RNA-Seq Kit - Pico Input Mammalian, SMARTer smRNA-Seq Kit for Illumina, PNK treatment+SMARTer smRNA-Seq Kit for Illumina, NEBNext Multiplex Small RNA Library Prep Set for Illumina; Purpose: To explore novel plasma extracellular RNA biomarkers for cancer diagnosis; To evaluate 5 different library construction methods

data_processing:
Adaptors and low-quality sequences in the raw sequencing data were trimmed using cutadapt version 2.3. Remeined reads were mapped to ERCC's spike-in sequences, NCBI's UniVec sequences and human rRNA sequences sequentially. GC oligos introduced in reverse transcription were trimmed off, after which reads shorter than 30 nt were discarded.
STAR (version 2.5.3a_modified) was used to map clean reads to the hg38 genome index built with the GENCODE v27 annotation
Duplicates in the aligned reads were removed using Picard Tools MarkDuplicates (version 2.20.0)
The count matrix was constructed using featureCounts11 v1.6.2 with the GENCODE v27 annotation, transcripts with uncertain coding potential annotation extracted from mitranscriptome, circular RNA annotation from circBase, Promoter, enhancer and repeat regions frm UCSC Genome Browser. Reads mapped to mitochondrial RNAs were excluded.
Genome_build: hg38
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

source_name: plasma

extract_protocol:
cfRNAs were extracted from 1 mL of plasma using the Plasma/Serum Circulating RNA and Exosomal Purification kit (Norgen)
SMARTer® Stranded Total RNA-Seq Kit - Pico Input Mammalian

tag: gender

tag: disease

value: Healthy donor


title: NC_PKU-2397512


title: female_1_nasal_ec

description: human Nasal EC


title: GC0713397_S114

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_612

description: Nasal Prox1+ cells


title: NC_PKU-2392860


title: nasal_prox1_622

description: Nasal Prox1+ cells


title: GC0713391_S108

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_623

description: Nasal Prox1+ cells


title: nasal_prox1_611

description: Nasal Prox1+ cells


title: male_2_nasal_ec

description: human Nasal EC


title: nasal_prox1_620

description: Nasal Prox1+ cells


title: GC0713395_S112

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713390_S107

description:
genomic DNA and RNA
scPCOR-seq


title: NC_ChQ-58

description:
cell-free RNA
RNA-seq of homo sapiens: Healthy donor's plasma; Provided by Southwest Hospital; Constructed by SMARTer Stranded Total RNA-Seq Kit - Pico Input Mammalian, SMARTer smRNA-Seq Kit for Illumina; Purpose: To explore novel plasma extracellular RNA biomarkers for cancer diagnosis; To evaluate 5 different library construction methods


title: nasal_prox1_610

description: Nasal Prox1+ cells


title: nasal_prox1_619

description: Nasal Prox1+ cells


title: nasal_prox1_609

description: Nasal Prox1+ cells


title: nasal_prox1_635

description: Nasal Prox1+ cells


title: nasal_prox1_608

description: Nasal Prox1+ cells


title: NC_ChQ-49


title: NC_PKU-50


title: nasal_prox1_607

description: Nasal Prox1+ cells


title: nasal_prox1_606

description: Nasal Prox1+ cells


title: nasal_prox1_605

description: Nasal Prox1+ cells


title: nasal_prox1_604

description: Nasal Prox1+ cells


title: nasal_prox1_615

description: Nasal Prox1+ cells


title: GC0713387_S104

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_602

description: Nasal Prox1+ cells


title: GC0713389_S106

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_601

description: Nasal Prox1+ cells


title: nasal_prox1_600

description: Nasal Prox1+ cells


title: nasal_prox1_613

description: Nasal Prox1+ cells


title: NC_ChQ-21


title: nasal_prox1_598

description: Nasal Prox1+ cells


title: NC_ChQ-25


title: NC_ChQ-28


title: GC0713388_S105

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713392_S109

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_603

description: Nasal Prox1+ cells


title: nasal_prox1_595

description: Nasal Prox1+ cells


title: nasal_prox1_596

description: Nasal Prox1+ cells


title: nasal_prox1_599

description: Nasal Prox1+ cells


title: nasal_prox1_594

description: Nasal Prox1+ cells


title: NC_ShH-1903250135

description:
cell-free RNA
RNA-seq of homo sapiens: Healthy donor's plasma; Provided by Second Military Medical University; Constructed by SMARTer Stranded Total RNA-Seq Kit - Pico Input Mammalian; Purpose: To explore novel plasma extracellular RNA biomarkers for cancer diagnosis


title: GC0713385_S102

description:
genomic DNA and RNA
scPCOR-seq


title: NC_ShH-1903250204


title: GC0713384_S101

description:
genomic DNA and RNA
scPCOR-seq


title: NC_ShH-1903250374


title: nasal_prox1_597

description: Nasal Prox1+ cells


title: NC_ChQ-23


title: GC0713386_S103

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_591

description: Nasal Prox1+ cells


title: GC0713381_S98

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_593

description: Nasal Prox1+ cells


title: NC_PKU-8111237

description:
cell-free RNA
RNA-seq of homo sapiens: Healthy donor's plasma; Provided by Peking University First Affiliated Hospital; Constructed by SMARTer Stranded Total RNA-Seq Kit - Pico Input Mammalian; Purpose: To explore novel plasma extracellular RNA biomarkers for cancer diagnosis


title: GC0713383_S100

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_589

description: Nasal Prox1+ cells


title: NC_PKU-48


title: GC0713380_S97

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713379_S96

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713382_S99

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713378_S95

description:
genomic DNA and RNA
scPCOR-seq


title: NC_PKU-37


title: NC_PKU-56


title: nasal_prox1_587

description: Nasal Prox1+ cells


title: nasal_prox1_588

description: Nasal Prox1+ cells


title: nasal_prox1_584

description: Nasal Prox1+ cells


title: NC_PKU-33


title: nasal_prox1_581

description: Nasal Prox1+ cells


title: nasal_prox1_586

description: Nasal Prox1+ cells


title: nasal_prox1_590

description: Nasal Prox1+ cells


title: GC0713375_S92

description:
genomic DNA and RNA
scPCOR-seq


title: NC_PKU-28


title: nasal_prox1_585

description: Nasal Prox1+ cells


title: nasal_prox1_579

description: Nasal Prox1+ cells


title: GC0713374_S91

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713377_S94

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713376_S93

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_592

description: Nasal Prox1+ cells


title: nasal_prox1_577

description: Nasal Prox1+ cells


title: nasal_prox1_582

description: Nasal Prox1+ cells


title: nasal_prox1_583

description: Nasal Prox1+ cells


title: NC_PKU-69


title: nasal_prox1_580

description: Nasal Prox1+ cells


title: nasal_prox1_573

description: Nasal Prox1+ cells


title: NC_PKU-2399728


title: nasal_prox1_578

description: Nasal Prox1+ cells


title: NC_PKU-2394780


title: NC_PKU-2392993


title: nasal_prox1_571

description: Nasal Prox1+ cells


title: nasal_prox1_570

description: Nasal Prox1+ cells


title: nasal_prox1_569

description: Nasal Prox1+ cells


title: GC0713370_S87

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713373_S90

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_568

description: Nasal Prox1+ cells


title: nasal_prox1_567

description: Nasal Prox1+ cells


title: NC_PKU-2397878


title: nasal_prox1_576

description: Nasal Prox1+ cells


title: GC0713372_S89

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_575

description: Nasal Prox1+ cells


title: nasal_prox1_565

description: Nasal Prox1+ cells


title: nasal_prox1_574

description: Nasal Prox1+ cells


title: nasal_prox1_564

description: Nasal Prox1+ cells


title: GC0713371_S88

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_572

description: Nasal Prox1+ cells


title: nasal_prox1_563

description: Nasal Prox1+ cells


title: nasal_prox1_560

description: Nasal Prox1+ cells


title: nasal_prox1_561

description: Nasal Prox1+ cells


title: NC_HaiB-3

description:
cell-free RNA
RNA-seq of homo sapiens: Healthy donor's plasma; Provided by Southwest Hospital; Constructed by SMARTer Stranded Total RNA-Seq Kit - Pico Input Mammalian; Purpose: To explore novel plasma extracellular RNA biomarkers for cancer diagnosis


title: nasal_prox1_562

description: Nasal Prox1+ cells


title: GC0713369_S86

description:
genomic DNA and RNA
scPCOR-seq


title: NC_PKU-2392932


title: GC0713368_S85

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_566

description: Nasal Prox1+ cells


title: nasal_prox1_558

description: Nasal Prox1+ cells


title: GC0713364_S81

description:
genomic DNA and RNA
scPCOR-seq


title: NC_ChQ-71


title: NC_HaiB-1


title: NC_PKU-2392931


title: nasal_prox1_555

description: Nasal Prox1+ cells


title: GC0713362_S79

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713366_S83

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713367_S84

description:
genomic DNA and RNA
scPCOR-seq


title: NC_PKU-2359973


title: GC0713365_S82

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_552

description: Nasal Prox1+ cells


title: NC_ChQ-65


title: nasal_prox1_559

description: Nasal Prox1+ cells


title: NC_HaiB-2


title: NC_ChQ-61


title: nasal_prox1_557

description: Nasal Prox1+ cells


title: GC0713363_S80

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713360_S77

description:
genomic DNA and RNA
scPCOR-seq


title: NC_PKU-2396996


title: nasal_prox1_556

description: Nasal Prox1+ cells


title: NC_ChQ-70


title: nasal_prox1_547

description: Nasal Prox1+ cells


title: nasal_prox1_545

description: Nasal Prox1+ cells


title: nasal_prox1_554

description: Nasal Prox1+ cells


title: nasal_prox1_553

description: Nasal Prox1+ cells


title: nasal_prox1_544

description: Nasal Prox1+ cells


title: nasal_prox1_551

description: Nasal Prox1+ cells


title: nasal_prox1_543

description: Nasal Prox1+ cells


title: GC0713361_S78

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_548

description: Nasal Prox1+ cells


title: nasal_prox1_549

description: Nasal Prox1+ cells


title: NC_ChQ-35


title: nasal_prox1_541

description: Nasal Prox1+ cells


title: nasal_prox1_540

description: Nasal Prox1+ cells


title: nasal_prox1_546

description: Nasal Prox1+ cells


title: GC0713358_S75

description:
genomic DNA and RNA
scPCOR-seq


title: NC_ChQ-52


title: NC_ChQ-51


title: GC0713357_S74

description:
genomic DNA and RNA
scPCOR-seq


title: NC_ChQ-29


title: NC_ChQ-40


title: GC0713354_S71

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713355_S72

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_537

description: Nasal Prox1+ cells


title: NC_ChQ-27


title: GC0713353_S70

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_534

description: Nasal Prox1+ cells


title: NC_ChQ-26


title: GC0713356_S73

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_533

description: Nasal Prox1+ cells


title: nasal_prox1_550

description: Nasal Prox1+ cells


title: nasal_prox1_538

description: Nasal Prox1+ cells


title: nasal_prox1_530

description: Nasal Prox1+ cells


title: NC_ChQ-11


title: nasal_prox1_529

description: Nasal Prox1+ cells


title: nasal_prox1_539

description: Nasal Prox1+ cells


title: nasal_prox1_542

description: Nasal Prox1+ cells


title: nasal_prox1_536

description: Nasal Prox1+ cells


title: nasal_prox1_528

description: Nasal Prox1+ cells


title: GC0713352_S69

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713348_S65

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713347_S64

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713349_S66

description:
genomic DNA and RNA
scPCOR-seq


title: NC_ChQ-36


title: CRC-2384076

description:
cell-free RNA
RNA-seq of homo sapiens: Colorectal Cancer patient's plasma; Provided by Peking University First Affiliated Hospital; Constructed by SMARTer Stranded Total RNA-Seq Kit - Pico Input Mammalian, PNK treatment+NEBNext Multiplex Small RNA Library Prep Set for Illumina; Purpose: To explore novel plasma extracellular RNA biomarkers for cancer diagnosis; To evaluate 5 different library construction methods

value: Colorectal Cancer patient


title: GC0713346_S63

description:
genomic DNA and RNA
scPCOR-seq


title: NC_ChQ-24


title: GC0713359_S76

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_523

description: Nasal Prox1+ cells


title: nasal_prox1_532

description: Nasal Prox1+ cells


title: GC0713351_S68

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713350_S67

description:
genomic DNA and RNA
scPCOR-seq


title: CRC-2380493

description:
cell-free RNA
RNA-seq of homo sapiens: Colorectal Cancer patient's plasma; Provided by Peking University First Affiliated Hospital; Constructed by SMARTer Stranded Total RNA-Seq Kit - Pico Input Mammalian, SMARTer smRNA-Seq Kit for Illumina; Purpose: To explore novel plasma extracellular RNA biomarkers for cancer diagnosis; To evaluate 5 different library construction methods


title: NC_ChQ-10


title: nasal_prox1_531

description: Nasal Prox1+ cells


title: nasal_prox1_535

description: Nasal Prox1+ cells


title: nasal_prox1_521

description: Nasal Prox1+ cells


title: GC0713345_S62

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_527

description: Nasal Prox1+ cells


title: nasal_prox1_517

description: Nasal Prox1+ cells


title: GC0713344_S61

description:
genomic DNA and RNA
scPCOR-seq


title: CRC-2412048

description:
cell-free RNA
RNA-seq of homo sapiens: Colorectal Cancer patient's plasma; Provided by Peking University First Affiliated Hospital; Constructed by SMARTer Stranded Total RNA-Seq Kit - Pico Input Mammalian; Purpose: To explore novel plasma extracellular RNA biomarkers for cancer diagnosis


title: nasal_prox1_516

description: Nasal Prox1+ cells


title: nasal_prox1_518

description: Nasal Prox1+ cells


title: nasal_prox1_526

description: Nasal Prox1+ cells


title: CRC-2384226

description:
cell-free RNA
RNA-seq of homo sapiens: Colorectal Cancer patient's plasma; Provided by Peking University First Affiliated Hospital; Constructed by SMARTer Stranded Total RNA-Seq Kit - Pico Input Mammalian, PNK treatment+SMARTer smRNA-Seq Kit for Illumina; Purpose: To explore novel plasma extracellular RNA biomarkers for cancer diagnosis; To evaluate 5 different library construction methods


title: nasal_prox1_525

description: Nasal Prox1+ cells


title: GC0713342_S59

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713341_S58

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_524

description: Nasal Prox1+ cells


title: nasal_prox1_520

description: Nasal Prox1+ cells


title: nasal_prox1_512

description: Nasal Prox1+ cells


title: nasal_prox1_522

description: Nasal Prox1+ cells


title: nasal_prox1_519

description: Nasal Prox1+ cells


title: CRC-9299429


title: CRC-2412066


title: CRC-2410759


title: CRC-2411896


title: nasal_prox1_514

description: Nasal Prox1+ cells


title: nasal_prox1_513

description: Nasal Prox1+ cells


title: nasal_prox1_504

description: Nasal Prox1+ cells


title: CRC-2408346


title: nasal_prox1_511

description: Nasal Prox1+ cells


title: CRC-2411883


title: CRC-2410966


title: nasal_prox1_509

description: Nasal Prox1+ cells


title: nasal_prox1_510

description: Nasal Prox1+ cells


title: CRC-2408206


title: nasal_prox1_508

description: Nasal Prox1+ cells


title: GC0713336_S53

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713343_S60

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713339_S56

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_507

description: Nasal Prox1+ cells


title: nasal_prox1_506

description: Nasal Prox1+ cells


title: CRC-2408784


title: nasal_prox1_498

description: Nasal Prox1+ cells


title: GC0713334_S51

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713338_S55

description:
genomic DNA and RNA
scPCOR-seq


title: CRC-2408137


title: nasal_prox1_497

description: Nasal Prox1+ cells


title: GC0713337_S54

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_495

description: Nasal Prox1+ cells


title: nasal_prox1_496

description: Nasal Prox1+ cells


title: CRC-2407821


title: nasal_prox1_515

description: Nasal Prox1+ cells


title: GC0713335_S52

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_501

description: Nasal Prox1+ cells


title: nasal_prox1_503

description: Nasal Prox1+ cells


title: CRC-2408162


title: nasal_prox1_500

description: Nasal Prox1+ cells


title: nasal_prox1_502

description: Nasal Prox1+ cells


title: nasal_prox1_493

description: Nasal Prox1+ cells


title: nasal_prox1_491

description: Nasal Prox1+ cells


title: GC0713340_S57

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_494

description: Nasal Prox1+ cells


title: CRC-2406552


title: nasal_prox1_492

description: Nasal Prox1+ cells


title: nasal_prox1_488

description: Nasal Prox1+ cells


title: GC0713332_S49

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713331_S48

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_499

description: Nasal Prox1+ cells


title: CRC-2406345


title: GC0713330_S47

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_489

description: Nasal Prox1+ cells


title: CRC-2405108


title: nasal_prox1_490

description: Nasal Prox1+ cells


title: GC0713333_S50

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713329_S46

description:
genomic DNA and RNA
scPCOR-seq


title: CRC-2399129


title: nasal_prox1_505

description: Nasal Prox1+ cells


title: nasal_prox1_486

description: Nasal Prox1+ cells


title: nasal_prox1_487

description: Nasal Prox1+ cells


title: CRC-2398897


title: CRC-2397180


title: GC0713327_S44

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_484

description: Nasal Prox1+ cells


title: nasal_prox1_485

description: Nasal Prox1+ cells


title: nasal_prox1_483

description: Nasal Prox1+ cells


title: CRC-2396837


title: GC0713328_S45

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713325_S42

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_481

description: Nasal Prox1+ cells


title: nasal_prox1_480

description: Nasal Prox1+ cells


title: CRC-2396217


title: GC0713326_S43

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_478

description: Nasal Prox1+ cells


title: nasal_prox1_477

description: Nasal Prox1+ cells


title: GC0713324_S41

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_476

description: Nasal Prox1+ cells


title: nasal_prox1_479

description: Nasal Prox1+ cells


title: nasal_prox1_475

description: Nasal Prox1+ cells


title: GC0713323_S40

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_482

description: Nasal Prox1+ cells


title: nasal_prox1_471

description: Nasal Prox1+ cells


title: CRC-2393807


title: nasal_prox1_470

description: Nasal Prox1+ cells


title: nasal_prox1_469

description: Nasal Prox1+ cells


title: CRC-2391097


title: CRC-2390716


title: nasal_prox1_474

description: Nasal Prox1+ cells


title: nasal_prox1_468

description: Nasal Prox1+ cells


title: nasal_prox1_472

description: Nasal Prox1+ cells


title: GC0713322_S39

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_464

description: Nasal Prox1+ cells


title: CRC-2389212


title: GC0713320_S37

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713319_S36

description:
genomic DNA and RNA
scPCOR-seq


title: CRC-2390502


title: GC0713321_S38

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_462

description: Nasal Prox1+ cells


title: nasal_prox1_463

description: Nasal Prox1+ cells


title: nasal_prox1_473

description: Nasal Prox1+ cells


title: nasal_prox1_467

description: Nasal Prox1+ cells


title: CRC-2390539


title: nasal_prox1_461

description: Nasal Prox1+ cells


title: CRC-2388859


title: GC0713315_S32

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713316_S33

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713318_S35

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713317_S34

description:
genomic DNA and RNA
scPCOR-seq


title: CRC-2387327


title: nasal_prox1_459

description: Nasal Prox1+ cells


title: nasal_prox1_466

description: Nasal Prox1+ cells


title: CRC-2388932


title: nasal_prox1_465

description: Nasal Prox1+ cells


title: nasal_prox1_460

description: Nasal Prox1+ cells


title: CRC-2386412


title: nasal_prox1_457

description: Nasal Prox1+ cells


title: nasal_prox1_456

description: Nasal Prox1+ cells


title: nasal_prox1_455

description: Nasal Prox1+ cells


title: nasal_prox1_458

description: Nasal Prox1+ cells


title: CRC-2384548


title: GC0713312_S29

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713311_S28

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_453

description: Nasal Prox1+ cells


title: CRC-2386612


title: nasal_prox1_454

description: Nasal Prox1+ cells


title: CRC-2384796


title: GC0713314_S31

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_451

description: Nasal Prox1+ cells


title: nasal_prox1_452

description: Nasal Prox1+ cells


title: GC0713309_S26

description:
genomic DNA and RNA
scPCOR-seq


title: CRC-2384272


title: CRC-2384541


title: GC0713310_S27

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713313_S30

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_450

description: Nasal Prox1+ cells


title: GC0713307_S24

description:
genomic DNA and RNA
scPCOR-seq


title: CRC-2384422


title: nasal_prox1_445

description: Nasal Prox1+ cells


title: nasal_prox1_448

description: Nasal Prox1+ cells


title: nasal_prox1_446

description: Nasal Prox1+ cells


title: CRC-2384377


title: nasal_prox1_447

description: Nasal Prox1+ cells


title: CRC-2384108


title: nasal_prox1_444

description: Nasal Prox1+ cells


title: GC0713306_S23

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_442

description: Nasal Prox1+ cells


title: GC0713305_S22

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_440

description: Nasal Prox1+ cells


title: nasal_prox1_449

description: Nasal Prox1+ cells


title: CRC-2383730


title: nasal_prox1_441

description: Nasal Prox1+ cells


title: CRC-2384058


title: nasal_prox1_439

description: Nasal Prox1+ cells


title: nasal_prox1_438

description: Nasal Prox1+ cells


title: GC0713304_S21

description:
genomic DNA and RNA
scPCOR-seq


title: CRC-2383555


title: nasal_prox1_437

description: Nasal Prox1+ cells


title: nasal_prox1_436

description: Nasal Prox1+ cells


title: GC0713303_S20

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_435

description: Nasal Prox1+ cells


title: CRC-2383420


title: nasal_prox1_430

description: Nasal Prox1+ cells


title: GC0713301_S18

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713302_S19

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713308_S25

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_434

description: Nasal Prox1+ cells


title: CRC-2383387


title: nasal_prox1_432

description: Nasal Prox1+ cells


title: CRC-2383018


title: nasal_prox1_428

description: Nasal Prox1+ cells


title: nasal_prox1_431

description: Nasal Prox1+ cells


title: CRC-2382513


title: CRC-2372270


title: nasal_prox1_433

description: Nasal Prox1+ cells


title: nasal_prox1_429

description: Nasal Prox1+ cells


title: nasal_prox1_427

description: Nasal Prox1+ cells


title: nasal_prox1_424

description: Nasal Prox1+ cells


title: GC0713300_S17

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713299_S16

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713297_S14

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713296_S13

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_426

description: Nasal Prox1+ cells


title: CRC-2362297


title: nasal_prox1_419

description: Nasal Prox1+ cells


title: CRC-2327118


title: GC0713294_S11

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_425

description: Nasal Prox1+ cells


title: nasal_prox1_418

description: Nasal Prox1+ cells


title: CRC-2334660


title: nasal_prox1_417

description: Nasal Prox1+ cells


title: nasal_prox1_423

description: Nasal Prox1+ cells


title: nasal_prox1_416

description: Nasal Prox1+ cells


title: GC0713293_S10

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_443

description: Nasal Prox1+ cells


title: nasal_prox1_421

description: Nasal Prox1+ cells


title: nasal_prox1_422

description: Nasal Prox1+ cells


title: GC0713290_S7

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713292_S9

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713295_S12

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713291_S8

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_420

description: Nasal Prox1+ cells


title: nasal_prox1_414

description: Nasal Prox1+ cells


title: STAD-2416091

description:
cell-free RNA
RNA-seq of homo sapiens: Stomach Cancer patient's plasma; Provided by Peking University First Affiliated Hospital; Constructed by SMARTer Stranded Total RNA-Seq Kit - Pico Input Mammalian; Purpose: To explore novel plasma extracellular RNA biomarkers for cancer diagnosis

value: Stomach Cancer patient


title: CRC-2280766


title: nasal_prox1_413

description: Nasal Prox1+ cells


title: nasal_prox1_412

description: Nasal Prox1+ cells


title: GC0713289_S6

description:
genomic DNA and RNA
scPCOR-seq


title: STAD-2415291


title: STAD-2416272


title: nasal_prox1_408

description: Nasal Prox1+ cells


title: STAD-2414774


title: nasal_prox1_415

description: Nasal Prox1+ cells


title: nasal_prox1_407

description: Nasal Prox1+ cells


title: nasal_prox1_410

description: Nasal Prox1+ cells


title: STAD-2414120


title: nasal_prox1_406

description: Nasal Prox1+ cells


title: GC0713288_S5

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_409

description: Nasal Prox1+ cells


title: nasal_prox1_411

description: Nasal Prox1+ cells


title: STAD-2414108


title: STAD-2414426


title: GC0713287_S4

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_405

description: Nasal Prox1+ cells


title: nasal_prox1_403

description: Nasal Prox1+ cells


title: nasal_prox1_404

description: Nasal Prox1+ cells


title: STAD-2412941


title: STAD-2412938


title: nasal_prox1_401

description: Nasal Prox1+ cells


title: nasal_prox1_399

description: Nasal Prox1+ cells


title: nasal_prox1_402

description: Nasal Prox1+ cells


title: GC0713286_S3

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_397

description: Nasal Prox1+ cells


title: nasal_prox1_400

description: Nasal Prox1+ cells


title: STAD-2412284


title: STAD-2406523


title: GC0713284_S1

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_398

description: Nasal Prox1+ cells


title: nasal_prox1_396

description: Nasal Prox1+ cells


title: GC0713298_S15

description:
genomic DNA and RNA
scPCOR-seq


title: STAD-2411921


title: GC0713282_S282

description:
genomic DNA and RNA
scPCOR-seq


title: STAD-2406754


title: nasal_prox1_393

description: Nasal Prox1+ cells


title: GC0713281_S281

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713280_S280

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_392

description: Nasal Prox1+ cells


title: nasal_prox1_389

description: Nasal Prox1+ cells


title: nasal_prox1_391

description: Nasal Prox1+ cells


title: STAD-2402396


title: GC0713279_S279

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713285_S2

description:
genomic DNA and RNA
scPCOR-seq


title: STAD-2396557


title: GC0713283_S283

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_388

description: Nasal Prox1+ cells


title: nasal_prox1_387

description: Nasal Prox1+ cells


title: STAD-2394727


title: nasal_prox1_394

description: Nasal Prox1+ cells


title: nasal_prox1_386

description: Nasal Prox1+ cells


title: nasal_prox1_385

description: Nasal Prox1+ cells


title: nasal_prox1_384

description: Nasal Prox1+ cells


title: nasal_prox1_390

description: Nasal Prox1+ cells


title: nasal_prox1_382

description: Nasal Prox1+ cells


title: STAD-2393829


title: nasal_prox1_395

description: Nasal Prox1+ cells


title: nasal_prox1_381

description: Nasal Prox1+ cells


title: GC0713278_S278

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_383

description: Nasal Prox1+ cells


title: nasal_prox1_379

description: Nasal Prox1+ cells


title: nasal_prox1_378

description: Nasal Prox1+ cells


title: GC0713276_S276

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713273_S273

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_377

description: Nasal Prox1+ cells


title: GC0713275_S275

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713274_S274

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713272_S272

description:
genomic DNA and RNA
scPCOR-seq


title: STAD-2390003


title: nasal_prox1_373

description: Nasal Prox1+ cells


title: GC0713271_S271

description:
genomic DNA and RNA
scPCOR-seq


title: STAD-2391832


title: nasal_prox1_372

description: Nasal Prox1+ cells


title: STAD-2386451


title: STAD-2393878


title: nasal_prox1_380

description: Nasal Prox1+ cells


title: STAD-2384513


title: STAD-2387809


title: STAD-2384103


title: nasal_prox1_368

description: Nasal Prox1+ cells


title: nasal_prox1_376

description: Nasal Prox1+ cells


title: STAD-2386653


title: nasal_prox1_367

description: Nasal Prox1+ cells


title: STAD-2383723


title: GC0713277_S277

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_365

description: Nasal Prox1+ cells


title: GC0713269_S269

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_374

description: Nasal Prox1+ cells


title: STAD-2387639


title: nasal_prox1_364

description: Nasal Prox1+ cells


title: STAD-2383652


title: nasal_prox1_370

description: Nasal Prox1+ cells


title: nasal_prox1_366

description: Nasal Prox1+ cells


title: nasal_prox1_361

description: Nasal Prox1+ cells


title: nasal_prox1_375

description: Nasal Prox1+ cells


title: nasal_prox1_360

description: Nasal Prox1+ cells


title: STAD-2381588


title: STAD-2380893


title: nasal_prox1_354

description: Nasal Prox1+ cells


title: nasal_prox1_371

description: Nasal Prox1+ cells


title: GC0713270_S270

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_352

description: Nasal Prox1+ cells


title: nasal_prox1_363

description: Nasal Prox1+ cells


title: GC0713268_S268

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_351

description: Nasal Prox1+ cells


title: GC0713265_S265

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713266_S266

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_362

description: Nasal Prox1+ cells


title: nasal_prox1_356

description: Nasal Prox1+ cells


title: GC0713267_S267

description:
genomic DNA and RNA
scPCOR-seq


title: STAD-2374161


title: STAD-2382823


title: nasal_prox1_359

description: Nasal Prox1+ cells


title: STAD-2244628


title: nasal_prox1_347

description: Nasal Prox1+ cells


title: STAD-2383295


title: nasal_prox1_369

description: Nasal Prox1+ cells


title: STAD-2382676


title: nasal_prox1_355

description: Nasal Prox1+ cells


title: nasal_prox1_357

description: Nasal Prox1+ cells


title: HCC-ShHW-352598

description:
cell-free RNA
RNA-seq of homo sapiens: Liver Cancer patient's plasma; Provided by National Center for Liver Cancer; Constructed by SMARTer Stranded Total RNA-Seq Kit - Pico Input Mammalian; Purpose: To explore novel plasma extracellular RNA biomarkers for cancer diagnosis

value: Liver Cancer patient


title: GC0713257_S257

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_344

description: Nasal Prox1+ cells


title: GC0713264_S264

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713263_S263

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_342

description: Nasal Prox1+ cells


title: nasal_prox1_341

description: Nasal Prox1+ cells


title: nasal_prox1_358

description: Nasal Prox1+ cells


title: GC0713259_S259

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_343

description: Nasal Prox1+ cells


title: GC0713262_S262

description:
genomic DNA and RNA
scPCOR-seq


title: HCC-ShHW-352272


title: GC0713261_S261

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_339

description: Nasal Prox1+ cells


title: nasal_prox1_353

description: Nasal Prox1+ cells


title: nasal_prox1_338

description: Nasal Prox1+ cells


title: GC0713254_S254

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_350

description: Nasal Prox1+ cells


title: nasal_prox1_348

description: Nasal Prox1+ cells


title: nasal_prox1_336

description: Nasal Prox1+ cells


title: STAD-2163710


title: GC0713260_S260

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713253_S253

description:
genomic DNA and RNA
scPCOR-seq


title: HCC-ShHW-351556


title: nasal_prox1_346

description: Nasal Prox1+ cells


title: GC0713258_S258

description:
genomic DNA and RNA
scPCOR-seq


title: HCC-ShHW-225484


title: STAD-2121836


title: nasal_prox1_334

description: Nasal Prox1+ cells


title: nasal_prox1_349

description: Nasal Prox1+ cells


title: GC0713252_S252

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713256_S256

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_340

description: Nasal Prox1+ cells


title: GC0713250_S250

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713255_S255

description:
genomic DNA and RNA
scPCOR-seq


title: HCC-ShHW-352347


title: nasal_prox1_331

description: Nasal Prox1+ cells


title: nasal_prox1_332

description: Nasal Prox1+ cells


title: nasal_prox1_345

description: Nasal Prox1+ cells


title: nasal_prox1_328

description: Nasal Prox1+ cells


title: HCC_ShHW-225050


title: GC0713249_S249

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_337

description: Nasal Prox1+ cells


title: GC0713248_S248

description:
genomic DNA and RNA
scPCOR-seq


title: HCC-ShHW-225464


title: nasal_prox1_333

description: Nasal Prox1+ cells


title: GC0713251_S251

description:
genomic DNA and RNA
scPCOR-seq


title: HCC-ShHW-224934


title: nasal_prox1_321

description: Nasal Prox1+ cells


title: nasal_prox1_320

description: Nasal Prox1+ cells


title: HCC_ShHW-225048


title: HCC_ShHW-225315


title: HCC-ShHW-224900


title: GC0713244_S244

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_323

description: Nasal Prox1+ cells


title: nasal_prox1_317

description: Nasal Prox1+ cells


title: nasal_prox1_325

description: Nasal Prox1+ cells


title: nasal_prox1_316

description: Nasal Prox1+ cells


title: nasal_prox1_327

description: Nasal Prox1+ cells


title: GC0713243_S243

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713247_S247

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_324

description: Nasal Prox1+ cells


title: nasal_prox1_329

description: Nasal Prox1+ cells


title: HCC_ShHW-224990


title: nasal_prox1_335

description: Nasal Prox1+ cells


title: nasal_prox1_326

description: Nasal Prox1+ cells


title: HCC_ShH-216287

description:
cell-free RNA
RNA-seq of homo sapiens: Liver Cancer patient's plasma; Provided by Eastern Hepatobiliary Surgery Hospital, Second Military Medical University; Constructed by SMARTer Stranded Total RNA-Seq Kit - Pico Input Mammalian; Purpose: To explore novel plasma extracellular RNA biomarkers for cancer diagnosis


title: GC0713246_S246

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713245_S245

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_322

description: Nasal Prox1+ cells


title: nasal_prox1_310

description: Nasal Prox1+ cells


title: HCC_ShH-216224


title: nasal_prox1_307

description: Nasal Prox1+ cells


title: nasal_prox1_318

description: Nasal Prox1+ cells


title: nasal_prox1_315

description: Nasal Prox1+ cells


title: HCC_ChQ-91244930

description:
cell-free RNA
RNA-seq of homo sapiens: Liver Cancer patient's plasma; Provided by Southwest Hospital; Constructed by SMARTer Stranded Total RNA-Seq Kit - Pico Input Mammalian; Purpose: To explore novel plasma extracellular RNA biomarkers for cancer diagnosis


title: nasal_prox1_306

description: Nasal Prox1+ cells


title: GC0713238_S238

description:
genomic DNA and RNA
scPCOR-seq


title: HCC-ShHW-223960


title: GC0713242_S242

description:
genomic DNA and RNA
scPCOR-seq


title: HCC-ShHW-224995


title: nasal_prox1_314

description: Nasal Prox1+ cells


title: HCC_ShHW-161444


title: nasal_prox1_313

description: Nasal Prox1+ cells


title: GC0713237_S237

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_304

description: Nasal Prox1+ cells


title: HCC_ChQ-8002020781


title: HCC_ShH-216176


title: GC0713241_S241

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713239_S239

description:
genomic DNA and RNA
scPCOR-seq


title: HCC_ShHW-225181


title: nasal_prox1_309

description: Nasal Prox1+ cells


title: GC0713240_S240

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_311

description: Nasal Prox1+ cells


title: nasal_prox1_301

description: Nasal Prox1+ cells


title: nasal_prox1_308

description: Nasal Prox1+ cells


title: nasal_prox1_305

description: Nasal Prox1+ cells


title: nasal_prox1_302

description: Nasal Prox1+ cells


title: nasal_prox1_312

description: Nasal Prox1+ cells


title: nasal_prox1_300

description: Nasal Prox1+ cells


title: HCC_ChQ-7000014337


title: GC0713236_S236

description:
genomic DNA and RNA
scPCOR-seq


title: HCC_ChQ-8002011290


title: HCC_ChQ-5


title: nasal_prox1_303

description: Nasal Prox1+ cells


title: nasal_prox1_297

description: Nasal Prox1+ cells


title: nasal_prox1_295

description: Nasal Prox1+ cells


title: nasal_prox1_298

description: Nasal Prox1+ cells


title: GC0713233_S233

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713234_S234

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_293

description: Nasal Prox1+ cells


title: nasal_prox1_294

description: Nasal Prox1+ cells


title: GC0713231_S231

description:
genomic DNA and RNA
scPCOR-seq


title: HCC_ChQ-4


title: GC0713232_S232

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_296

description: Nasal Prox1+ cells


title: HCC_ChQ-33630257


title: GC0713235_S235

description:
genomic DNA and RNA
scPCOR-seq


title: HCC_ChQ-10


title: nasal_prox1_299

description: Nasal Prox1+ cells


title: nasal_prox1_290

description: Nasal Prox1+ cells


title: GC0713229_S229

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713230_S230

description:
genomic DNA and RNA
scPCOR-seq


title: LUAD-2394433

description:
cell-free RNA
RNA-seq of homo sapiens: Lung Cancer patient's plasma; Provided by Peking University First Affiliated Hospital; Constructed by SMARTer Stranded Total RNA-Seq Kit - Pico Input Mammalian; Purpose: To explore novel plasma extracellular RNA biomarkers for cancer diagnosis

value: Lung Cancer patient


title: nasal_prox1_288

description: Nasal Prox1+ cells


title: nasal_prox1_291

description: Nasal Prox1+ cells


title: nasal_prox1_287

description: Nasal Prox1+ cells


title: nasal_prox1_286

description: Nasal Prox1+ cells


title: LUAD-2391958


title: nasal_prox1_284

description: Nasal Prox1+ cells


title: LUAD-2388850


title: nasal_prox1_289

description: Nasal Prox1+ cells


title: nasal_prox1_283

description: Nasal Prox1+ cells


title: nasal_prox1_285

description: Nasal Prox1+ cells


title: nasal_prox1_280

description: Nasal Prox1+ cells


title: nasal_prox1_292

description: Nasal Prox1+ cells


title: GC0713227_S227

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_281

description: Nasal Prox1+ cells


title: LUAD-2386387


title: GC0713226_S226

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_282

description: Nasal Prox1+ cells


title: GC0713225_S225

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_279

description: Nasal Prox1+ cells


title: GC0713228_S228

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_277

description: Nasal Prox1+ cells


title: nasal_prox1_274

description: Nasal Prox1+ cells


title: nasal_prox1_273

description: Nasal Prox1+ cells


title: GC0713221_S221

description:
genomic DNA and RNA
scPCOR-seq


title: LUAD-2384360


title: LUAD-2386375


title: LUAD-2384356


title: nasal_prox1_270

description: Nasal Prox1+ cells


title: nasal_prox1_276

description: Nasal Prox1+ cells


title: nasal_prox1_278

description: Nasal Prox1+ cells


title: nasal_prox1_275

description: Nasal Prox1+ cells


title: GC0713220_S220

description:
genomic DNA and RNA
scPCOR-seq


title: LUAD-2386178


title: LUAD-2387760


title: LUAD-2384340


title: nasal_prox1_272

description: Nasal Prox1+ cells


title: GC0713219_S219

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713218_S218

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713223_S223

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_268

description: Nasal Prox1+ cells


title: GC0713224_S224

description:
genomic DNA and RNA
scPCOR-seq


title: LUAD-2386025


title: nasal_prox1_269

description: Nasal Prox1+ cells


title: nasal_prox1_271

description: Nasal Prox1+ cells


title: nasal_prox1_319

description: Nasal Prox1+ cells


title: GC0713217_S217

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713216_S216

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_263

description: Nasal Prox1+ cells


title: LUAD-2383900


title: nasal_prox1_267

description: Nasal Prox1+ cells


title: GC0713215_S215

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_266

description: Nasal Prox1+ cells


title: nasal_prox1_265

description: Nasal Prox1+ cells


title: LUAD-2384213


title: nasal_prox1_264

description: Nasal Prox1+ cells


title: nasal_prox1_262

description: Nasal Prox1+ cells


title: LUAD-2384220


title: GC0713214_S214

description:
genomic DNA and RNA
scPCOR-seq


title: LUAD-2382462


title: nasal_prox1_330

description: Nasal Prox1+ cells


title: nasal_prox1_258

description: Nasal Prox1+ cells


title: LUAD-2383484


title: nasal_prox1_261

description: Nasal Prox1+ cells


title: LUAD-2382392


title: nasal_prox1_260

description: Nasal Prox1+ cells


title: nasal_prox1_254

description: Nasal Prox1+ cells


title: nasal_prox1_255

description: Nasal Prox1+ cells


title: LUAD-2382186


title: GC0713213_S213

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_253

description: Nasal Prox1+ cells


title: nasal_prox1_256

description: Nasal Prox1+ cells


title: LUAD-2382152


title: nasal_prox1_257

description: Nasal Prox1+ cells


title: nasal_prox1_251

description: Nasal Prox1+ cells


title: LUAD-2381787


title: nasal_prox1_250

description: Nasal Prox1+ cells


title: nasal_prox1_249

description: Nasal Prox1+ cells


title: nasal_prox1_252

description: Nasal Prox1+ cells


title: GC0713209_S209

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713210_S210

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_248

description: Nasal Prox1+ cells


title: LUAD-2381602


title: GC0713212_S212

description:
genomic DNA and RNA
scPCOR-seq


title: LUAD-2381280


title: nasal_prox1_247

description: Nasal Prox1+ cells


title: nasal_prox1_246

description: Nasal Prox1+ cells


title: GC0713207_S207

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_244

description: Nasal Prox1+ cells


title: nasal_prox1_242

description: Nasal Prox1+ cells


title: nasal_prox1_245

description: Nasal Prox1+ cells


title: GC0713211_S211

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713206_S206

description:
genomic DNA and RNA
scPCOR-seq


title: LUAD-2381001


title: nasal_prox1_241

description: Nasal Prox1+ cells


title: LUAD-2380982


title: LUAD-2386185


title: nasal_prox1_240

description: Nasal Prox1+ cells


title: GC0713205_S205

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713222_S222

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_238

description: Nasal Prox1+ cells


title: GC0713204_S204

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_239

description: Nasal Prox1+ cells


title: GC0713203_S203

description:
genomic DNA and RNA
scPCOR-seq


title: LUAD-2380731


title: GC0713208_S208

description:
genomic DNA and RNA
scPCOR-seq


title: LUAD-2381036


title: nasal_prox1_237

description: Nasal Prox1+ cells


title: LUAD-2379275


title: LUAD-2379223


title: nasal_prox1_243

description: Nasal Prox1+ cells


title: GC0713201_S201

description:
genomic DNA and RNA
scPCOR-seq


title: LUAD-2379197


title: nasal_prox1_259

description: Nasal Prox1+ cells


title: GC0713202_S202

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713200_S200

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_228

description: Nasal Prox1+ cells


title: nasal_prox1_233

description: Nasal Prox1+ cells


title: nasal_prox1_231

description: Nasal Prox1+ cells


title: nasal_prox1_232

description: Nasal Prox1+ cells


title: nasal_prox1_230

description: Nasal Prox1+ cells


title: LUAD-2379000


title: LUAD-2359535


title: nasal_prox1_227

description: Nasal Prox1+ cells


title: GC0713197_S197

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713199_S199

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_236

description: Nasal Prox1+ cells


title: nasal_prox1_235

description: Nasal Prox1+ cells


title: LUAD-2378877


title: nasal_prox1_223

description: Nasal Prox1+ cells


title: nasal_prox1_224

description: Nasal Prox1+ cells


title: GC0713195_S195

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713198_S198

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_234

description: Nasal Prox1+ cells


title: ESCA_XieH-1630872

description:
cell-free RNA
RNA-seq of homo sapiens: Esophagus Cancer patient's plasma; Provided by Chinese Academy of Medical Sciences and Peking Union Medical College.; Constructed by SMARTer Stranded Total RNA-Seq Kit - Pico Input Mammalian; Purpose: To explore novel plasma extracellular RNA biomarkers for cancer diagnosis

value: Esophagus Cancer patient


title: LUAD-2238350


title: nasal_prox1_220

description: Nasal Prox1+ cells


title: nasal_prox1_226

description: Nasal Prox1+ cells


title: GC0713196_S196

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713194_S194

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_222

description: Nasal Prox1+ cells


title: LUAD-2359570


title: nasal_prox1_221

description: Nasal Prox1+ cells


title: nasal_prox1_219

description: Nasal Prox1+ cells


title: nasal_prox1_217

description: Nasal Prox1+ cells


title: GC0713193_S193

description:
genomic DNA and RNA
scPCOR-seq


title: ESCA_XieH-1630667


title: nasal_prox1_229

description: Nasal Prox1+ cells


title: nasal_prox1_216

description: Nasal Prox1+ cells


title: ESCA_UnionH-1631432


title: GC0713191_S191

description:
genomic DNA and RNA
scPCOR-seq


title: ESCA_UnionH-1628973


title: nasal_prox1_215

description: Nasal Prox1+ cells


title: nasal_prox1_225

description: Nasal Prox1+ cells


title: GC0713190_S190

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713189_S189

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_211

description: Nasal Prox1+ cells


title: nasal_prox1_218

description: Nasal Prox1+ cells


title: nasal_prox1_208

description: Nasal Prox1+ cells


title: ESCA_UnionH-1629817


title: nasal_prox1_214

description: Nasal Prox1+ cells


title: nasal_prox1_213

description: Nasal Prox1+ cells


title: nasal_prox1_210

description: Nasal Prox1+ cells


title: ESCA_UnionH-1626626


title: nasal_prox1_206

description: Nasal Prox1+ cells


title: nasal_prox1_209

description: Nasal Prox1+ cells


title: GC0713187_S187

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713192_S192

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_207

description: Nasal Prox1+ cells


title: GC0713188_S188

description:
genomic DNA and RNA
scPCOR-seq


title: ESCA_UnionH-1626151


title: nasal_prox1_204

description: Nasal Prox1+ cells


title: nasal_prox1_212

description: Nasal Prox1+ cells


title: ESCA_UnionH-1620241


title: nasal_prox1_205

description: Nasal Prox1+ cells


title: nasal_prox1_200

description: Nasal Prox1+ cells


title: ESCA_PKU-2418551

description:
cell-free RNA
RNA-seq of homo sapiens: Esophagus Cancer patient's plasma; Provided by Peking University First Affiliated Hospital; Constructed by SMARTer Stranded Total RNA-Seq Kit - Pico Input Mammalian; Purpose: To explore novel plasma extracellular RNA biomarkers for cancer diagnosis


title: GC0713184_S184

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_199

description: Nasal Prox1+ cells


title: nasal_prox1_197

description: Nasal Prox1+ cells


title: ESCA_PKU-2418615


title: nasal_prox1_203

description: Nasal Prox1+ cells


title: GC0713186_S186

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_202

description: Nasal Prox1+ cells


title: ESCA_PKU-2415457


title: ESCA_PKU-2414854


title: GC0713181_S181

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_193

description: Nasal Prox1+ cells


title: ESCA_PKU-2414682


title: GC0713185_S185

description:
genomic DNA and RNA
scPCOR-seq


title: ESCA_PKU-2415974


title: GC0713180_S180

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_194

description: Nasal Prox1+ cells


title: nasal_prox1_190

description: Nasal Prox1+ cells


title: nasal_prox1_192

description: Nasal Prox1+ cells


title: nasal_prox1_198

description: Nasal Prox1+ cells


title: ESCA_PKU-2415469


title: ESCA_PKU-2414413


title: GC0713182_S182

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_186

description: Nasal Prox1+ cells


title: nasal_prox1_191

description: Nasal Prox1+ cells


title: nasal_prox1_201

description: Nasal Prox1+ cells


title: nasal_prox1_185

description: Nasal Prox1+ cells


title: nasal_prox1_189

description: Nasal Prox1+ cells


title: ESCA_PKU-2414466


title: GC0713183_S183

description:
genomic DNA and RNA
scPCOR-seq


title: GC0713177_S177

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_188

description: Nasal Prox1+ cells


title: GC0713179_S179

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_196

description: Nasal Prox1+ cells


title: nasal_prox1_181

description: Nasal Prox1+ cells


title: ESCA_PKU-2414433


title: nasal_prox1_195

description: Nasal Prox1+ cells


title: nasal_prox1_187

description: Nasal Prox1+ cells


title: nasal_prox1_179

description: Nasal Prox1+ cells


title: GC0713174_S174

description:
genomic DNA and RNA
scPCOR-seq


title: nasal_prox1_178

description: Nasal Prox1+ cells


title: nasal_prox1_184

description: Nasal Prox1+ cells


title: nasal_prox1_182

description: Nasal Prox1+ cells


title: ESCA_PKU-2412866


title: nasal_prox1_177

description: Nasal Prox1+ cells


title: nasal_prox1_183

description: Nasal Prox1+ cells


title: GC0713176_S176

description:
genomic DNA and RNA
scPCOR-seq


title: ESCA_PKU-2412565


title: ESCA_PKU-2412347


title: nasal_prox1_175

description: Nasal Prox1+ cells