description: L4_W219: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0987), replicate 2


status: Public on Jul 15 2022

type: SRA

city: Toronto

first: Ulrich

last: Braunschweig

state: Ontario

address: 160 College Street

department: Donnelly Centre

country: Canada

institute: University of Toronto

description: L4_W212: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cic knockdown (T0980), replicate 2

library_source: transcriptomic

data_processing:
CASAVA 1.8 was used for base calling.
Fastq files contain demultiplexed reads which were assigned to the appropriate treatment by matching to expected forward and reverse barcodes (sequenced in dedicated reads; not supplied).
Forward and reverse event reads were mapped to custom junction libraries representing all expected splice variants (supplied as processed files), using bowtie with settings --best -v 3 -k 1 --trim3 26 --trim5 10. Trimming was done to remove lower-quality, uninformative ends and because forward reads had a missing base call at position 11 due to a power outage. Junction libraries were first constructed from NCBIm37/mm9 gene annotations, and then refined based on the results of de novo mapping of the reads from one full Illumina lane from each cell line using tophat (default settings with -i 40 and providing Ensembl transcript annotations for NCBIm37), after quality trimming (minimum MAPQ of 33) from the 3'-end with the fastx toolkit. Mapped reads were counted per junction.
Alternative splicing analysis: Percent-spliced-in (PSI) values were calculated for each alternative exon, or part thereof in the case of alternative 5'-/3'-splice sites ('event'), from read tallies as follows: PSI was calculated independently from forward and reverse reads as the percentage of reads supporting inclusion divided by the total number of reads for the event. For alternative 5'/3'-ss events that were part of an alternative exon (Foxm1.A2, Mta1.A1, Uspl1.A3), the PSI was instead calculated with reference to the total reads supporting inclusion of that exon in order to assess independent regulation of alternative splice site usage. Only the read direction in which all reads unambiguously supported either inclusion or exclusion of an event was used, and the average if that applied for both. Exploratory analysis revealed that PSI values showed low-level batch effects per 96-well plate which we moderated by subtracting a weighted plate median in which negative controls (siNT and mock treatment) were given 20x more weight than other samples. To derive variances, and because PSI values are not nearly normally distributed but roughly follow a beta distribution, we elected to fit a beta distribution to each pair of replicate treatments, as well as to all negative controls from both replicates, using maximum-likelihood fitting as implemented in the fitdistr() function from the R package MASS {Venables & Ripley, Modern Applied Statistics with S (2002)}. Iterative optimization of shape parameters was initiated with settings x=PSI, shape1=1, shape2=1, method=”L-BFGS-B”, lower=0.01, and upper=mean number of reads supporting each PSI value. A modified Strictly Standardized Mean Difference (SSMD {Zhang, Genomics (2007)}) was then calculated based on the formula: SSMD = (μt – μc)/SQRT(vart + varc) where μt and μc are the means (corresponding to the PSI), and vart and varc the variances of the beta distributions fitted to the treatment replicates and negative controls, respectively. Events for which not all reads from at least one direction were informative (Mff.A2, Tead1.A2) were excluded from further analysis, as were events in individual treatments with less than 20 reads in one or both replicates (~9% of all event x treatment combinations). Additionally, the following events were removed from further splicing analysis: expression only events or constitutive exons, Fgf4, Gapdh, Srpk2, Srrm4; events with consistently low read counts: Atg13.A1, H2afy.A2, Tcf7l1 (N2A only), Dnmt3b (N2A only); or because measured inclusion was biased by differential length of isoforms:, Fgfr1, Sall4.
Expression analysis: Read counts from all splice variants of each gene were used to estimate relative mRNA expression levels, reads per million reads (RPMs). Differential expression analysis based on raw read counts was performed using the generalized linear models workflow from the R package edgeR. Plate, position (edge/interior) and treatment were used as design factors (where all treatments of each type of control were treated as replicates.) Models fitted using estimateDisp() to estimate the common, trended, and tag-wise dispersion for the CGR8 and N2A data separately. Subsequently, differences attributable to treatment, plate, or position contrasts were extracted with glmLRT() and represented as log2-fold changes with associated FDR. Fold-changes for treatments are relative to the siNT and mock-treatment controls.
Genome_build: mm10
Supplementary_files_format_and_content: Processed files are either tab-delimited  tables (.tab) or FASTA files (.fa).   JunctionLibrary_design.csv contains information about sequence and 1-based coordinates of all elements that make up each event, along with vast-tools ID (vastEVENT) and information about how elements are connected. See https://github.com/UBrau/SPARpipe for information about library design.  Junctions108_11-101_fwd.fa and Junctions108_11-101_rev.fa contain all possible junctions given the event elements and read length for forward and reverse reads, respectively.  Events108_11-101.tab indicates which junctions were used to calculate PSI for each element.  Treatments_fullScreen.csv contains information about all 1536 control and experimental knockdowns.  ExprContrasts_fullScreen.csv contains the design factors for differential expression analysis.  ReadsPerEvents.tab.gz contains raw read counts per treatment and event element.  PSI.raw.tab.gz contains raw PSI for each treatment and event element.  dPSI.norm.tab.gz contains normalized and filtered dPSI.  SSMD.norm.tab.gz contains normalized and filtered SSMD.  Expression.Treatment.tab.gz contains results from differential expression analysis (differential expression due to treatment).

molecule: total RNA

organism: Mus musculus

source_name: Mouse neuroblastoma cells

growth_protocol: Mouse neuroblastoma (N2A) cells were grown in DMEM supplemented with 10% FBS, sodium pyruvate, MEM non-essential amino acids, and penicillin/streptomycin and maintained at 37°C with 5% CO2.

extract_protocol:
Forty-eight hours post-transfection, total RNA were purified from cultured cells using RNeasy Plus 96 Kit (Qiagen), as per the manufacturer’s instructions.
For each sample, a multiplex RT-PCR assay was first applied to simultaneously amplify 108 AS and/or expression events in a single reaction. The multiplex RT-PCR reaction was carried out in 96-well plates using the OneStep RT-PCR kit (Qiagen) as recommended by the manufacturer, with the following changes: reactions were performed in a volume of 20 uL with 2 uL of the purified total RNA as input, and a mixture of 50 pairs of primers was added to each reaction with a final concentration of 0.25 uM for each individual forward and reverse primer. Four identical Veriti 96-well Thermal Cyclers (Applied Biosystems) were used with the following conditions: 50°C for 30 minutes, 95°C for 15 minute, 30 cycles of 94°C for 40 seconds, 58°C for 1 minute (slow ramp rate), 72°C for 3 minutes, and a final extension step at 72°C for 10 minutes. Two sets of barcodes were incorporated into forward and reverse primers, respectively, after the universal adaptors and added to the amplicons in the second PCR reaction to allow demultiplexing all reads that were derived from a particular treatment. Primers sequences were: forward primer, AATGATACGGCGACCACCGAGATCTACACNNNNNNNNACACTCTTTCCCTACACGACGCTCTTCCGATCT (N denotes i5 barcode); reverse primer, CAAGCAGAAGACGGCATACGAGATNNNNNNNNGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT (N denotes i7 primer). The second PCR was performed using Phusion High-Fidelity DNA Polymerase (Thermo Scientific), as per the manufacturer’s instructions. For each 20 uL of reaction, 1 uL of the multiplex RT-PCR reaction products was used as templates. The thermal cycling conditions were as follows: 98°C for 30 seconds, 15 cycles of 98°C for 10 seconds, 65°C for 30 seconds, 72°C for 30 seconds, and a final extension step at 72°C for 5 minutes. The resulting libraries were pooled and sequenced.

treatment_protocol: Twenty-four hours prior to transfection, N2A cells were seeded in 96-well plates at 5000 cells per well. Cells were transfected with the SMARTpool siRNAs at 50 nM final concentration using DharmaFECT1 reagent (Dharmacon), as recommended by the manufacturer.

tag: tissue

value: Mouse neuroblastoma cells

tag: cell line


description: L4_W217: SPAR-seq of 108 multi-exon gene regions in N2A cells, Deb1 knockdown (T0985), replicate 2


description: L4_W214: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cpeb3 knockdown (T0982), replicate 2


description: L4_W230: SPAR-seq of 108 multi-exon gene regions in N2A cells, Capn5 knockdown (T0998), replicate 2


description: L4_W210: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm34 knockdown (T0978), replicate 2


description: L4_W207: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cpsf4l knockdown (T0975), replicate 2


description: L4_W226: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zbtb24 knockdown (T0994), replicate 2


description: L4_W211: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ddx1 knockdown (T0979), replicate 2


description: L4_W236: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cdk2 knockdown (T1004), replicate 2


description: L4_W206: SPAR-seq of 108 multi-exon gene regions in N2A cells, Csn3 knockdown (T0974), replicate 2


description: L4_W208: SPAR-seq of 108 multi-exon gene regions in N2A cells, Chd3 knockdown (T0976), replicate 2


description: L4_W205: SPAR-seq of 108 multi-exon gene regions in N2A cells, Chd1l knockdown (T0973), replicate 2


description: L4_W218: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phf21a knockdown (T0986), replicate 2


description: L4_W204: SPAR-seq of 108 multi-exon gene regions in N2A cells, Camk4 knockdown (T0972), replicate 2


description: L4_W202: SPAR-seq of 108 multi-exon gene regions in N2A cells, Carhsp1 knockdown (T0970), replicate 2


description: L4_W209: SPAR-seq of 108 multi-exon gene regions in N2A cells, Boll knockdown (T0977), replicate 2


description: L4_W201: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp768 knockdown (T0969), replicate 2


description: L4_W199: SPAR-seq of 108 multi-exon gene regions in N2A cells, D1Pas1 knockdown (T0967), replicate 2


description: L4_W195: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ddx41 knockdown (T0963), replicate 2


description: L4_W197: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ddx19a knockdown (T0965), replicate 2


description: L4_W220: SPAR-seq of 108 multi-exon gene regions in N2A cells, D19Bwg1357e knockdown (T0988), replicate 2


description: L4_W200: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zbtb40 knockdown (T0968), replicate 2


description: L4_W196: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cpsf4 knockdown (T0964), replicate 2


description: L4_W203: SPAR-seq of 108 multi-exon gene regions in N2A cells, Txnl4b knockdown (T0971), replicate 2


description: L4_W213: SPAR-seq of 108 multi-exon gene regions in N2A cells, Trmt1 knockdown (T0981), replicate 2


description: L4_W192: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0960), replicate 2


description: L4_W198: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cstf2 knockdown (T0966), replicate 2


description: L4_W193: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0961), replicate 2


description: L4_W194: SPAR-seq of 108 multi-exon gene regions in N2A cells, Lemd2 knockdown (T0962), replicate 2


description: L4_W190: SPAR-seq of 108 multi-exon gene regions in N2A cells, Esrp2 knockdown (T0958), replicate 2


description: L4_W189: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp459 knockdown (T0957), replicate 2


description: L4_W185: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ercc6l knockdown (T0953), replicate 2


description: L4_W184: SPAR-seq of 108 multi-exon gene regions in N2A cells, Setd1b knockdown (T0952), replicate 2


description: L4_W188: SPAR-seq of 108 multi-exon gene regions in N2A cells, Setd1a knockdown (T0956), replicate 2


description: L4_W186: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zbtb38 knockdown (T0954), replicate 2


description: L4_W181: SPAR-seq of 108 multi-exon gene regions in N2A cells, Adar knockdown (T0949), replicate 2


description: L4_W187: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dhx57 knockdown (T0955), replicate 2


description: L4_W183: SPAR-seq of 108 multi-exon gene regions in N2A cells, Arglu1 knockdown (T0951), replicate 2


description: L4_W182: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hmgxb3 knockdown (T0950), replicate 2


description: L4_W179: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zgpat knockdown (T0947), replicate 2


description: L4_W180: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srbd1 knockdown (T0948), replicate 2


description: L4_W178: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prmt6 knockdown (T0946), replicate 2


description: L4_W177: SPAR-seq of 108 multi-exon gene regions in N2A cells, Gemin8 knockdown (T0945), replicate 2


description: L4_W176: SPAR-seq of 108 multi-exon gene regions in N2A cells, Raver2 knockdown (T0944), replicate 2


description: L4_W175: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zc3h12a knockdown (T0943), replicate 2


description: L4_W191: SPAR-seq of 108 multi-exon gene regions in N2A cells, Baz2a knockdown (T0959), replicate 2


description: L4_W174: SPAR-seq of 108 multi-exon gene regions in N2A cells, Samd14 knockdown (T0942), replicate 2


description: L4_W169: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eme1 knockdown (T0937), replicate 2


description: L4_W172: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srrt knockdown (T0940), replicate 2


description: L4_W167: SPAR-seq of 108 multi-exon gene regions in N2A cells, 5930416I19Rik knockdown (T0935), replicate 2


description: L4_W173: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zbtb44 knockdown (T0941), replicate 2


description: L4_W168: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp958 knockdown (T0936), replicate 2


description: L4_W170: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tmem63a knockdown (T0938), replicate 2


description: L4_W166: SPAR-seq of 108 multi-exon gene regions in N2A cells, Morn4 knockdown (T0934), replicate 2


description: L4_W165: SPAR-seq of 108 multi-exon gene regions in N2A cells, Actr8 knockdown (T0933), replicate 2


description: L4_W162: SPAR-seq of 108 multi-exon gene regions in N2A cells, Suv420h2 knockdown (T0930), replicate 2


description: L4_W163: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ap1s3 knockdown (T0931), replicate 2


description: L4_W156: SPAR-seq of 108 multi-exon gene regions in N2A cells, Aqr knockdown (T0924), replicate 2


description: L4_W161: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp934 knockdown (T0929), replicate 2


description: L4_W153: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0921), replicate 2


description: L4_W154: SPAR-seq of 108 multi-exon gene regions in N2A cells, Baz1a knockdown (T0922), replicate 2


description: L4_W171: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tbl1xr1 knockdown (T0939), replicate 2


description: L4_W157: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sfr1 knockdown (T0925), replicate 2


description: L4_W158: SPAR-seq of 108 multi-exon gene regions in N2A cells, Arrdc1 knockdown (T0926), replicate 2


description: L4_W149: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp445 knockdown (T0917), replicate 2


description: L4_W148: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm47 knockdown (T0916), replicate 2


description: L4_W151: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ankrd17 knockdown (T0919), replicate 2


description: L4_W152: SPAR-seq of 108 multi-exon gene regions in N2A cells, AI314976 knockdown (T0920), replicate 2


description: L4_W150: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zc3h10 knockdown (T0918), replicate 2


description: L4_W137: SPAR-seq of 108 multi-exon gene regions in N2A cells, Bend3 knockdown (T0905), replicate 2


description: L4_W134: SPAR-seq of 108 multi-exon gene regions in N2A cells, Asf1b knockdown (T0902), replicate 2


description: L4_W147: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp871 knockdown (T0915), replicate 2


description: L4_W144: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zbtb12 knockdown (T0912), replicate 2


description: L4_W135: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0903), replicate 2


description: L4_W141: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0909), replicate 2


description: L4_W143: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ash2l knockdown (T0911), replicate 2


description: L4_W142: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prmt7 knockdown (T0910), replicate 2


description: L4_W140: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp652 knockdown (T0908), replicate 2


description: L4_W160: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srek1 knockdown (T0928), replicate 2


description: L4_W159: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbfox1 knockdown (T0927), replicate 2


description: L4_W139: SPAR-seq of 108 multi-exon gene regions in N2A cells, Celf6 knockdown (T0907), replicate 2


description: L4_W138: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp574 knockdown (T0906), replicate 2


description: L4_W164: SPAR-seq of 108 multi-exon gene regions in N2A cells, Asf1a knockdown (T0932), replicate 2


description: L4_W136: SPAR-seq of 108 multi-exon gene regions in N2A cells, Klhdc4 knockdown (T0904), replicate 2


description: L4_W155: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp668 knockdown (T0923), replicate 2


description: L4_W127: SPAR-seq of 108 multi-exon gene regions in N2A cells, Arid5b knockdown (T0895), replicate 2


description: L4_W128: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ncapd3 knockdown (T0896), replicate 2


description: L4_W125: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ddx39b knockdown (T0893), replicate 2


description: L4_W126: SPAR-seq of 108 multi-exon gene regions in N2A cells, Arid2 knockdown (T0894), replicate 2


description: L4_W145: SPAR-seq of 108 multi-exon gene regions in N2A cells, Arrb2 knockdown (T0913), replicate 2


description: L4_W123: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0891), replicate 2


description: L4_W146: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp629 knockdown (T0914), replicate 2


description: L4_W130: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zmym6 knockdown (T0898), replicate 2


description: L4_W133: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snrnp48 knockdown (T0901), replicate 2


description: L4_W129: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ncaph knockdown (T0897), replicate 2


description: L4_W124: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cpsf7 knockdown (T0892), replicate 2


description: L4_W121: SPAR-seq of 108 multi-exon gene regions in N2A cells, Banf1 knockdown (T0889), replicate 2


description: L4_W120: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cobra1 knockdown (T0888), replicate 2


description: L4_W132: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp646 knockdown (T0900), replicate 2


description: L4_W131: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp825 knockdown (T0899), replicate 2


description: L4_W117: SPAR-seq of 108 multi-exon gene regions in N2A cells, Adarb1 knockdown (T0885), replicate 2


description: L4_W119: SPAR-seq of 108 multi-exon gene regions in N2A cells, Adarb2 knockdown (T0887), replicate 2


description: L4_W115: SPAR-seq of 108 multi-exon gene regions in N2A cells, Anks1 knockdown (T0883), replicate 2


description: L4_W113: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mau2 knockdown (T0881), replicate 2


description: L4_W110: SPAR-seq of 108 multi-exon gene regions in N2A cells, Csdc2 knockdown (T0878), replicate 2


description: L4_W111: SPAR-seq of 108 multi-exon gene regions in N2A cells, Gpank1 knockdown (T0879), replicate 2


description: L4_W116: SPAR-seq of 108 multi-exon gene regions in N2A cells, Arrdc4 knockdown (T0884), replicate 2


description: L4_W112: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sun2 knockdown (T0880), replicate 2


description: L4_W109: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pif1 knockdown (T0877), replicate 2


description: L4_W104: SPAR-seq of 108 multi-exon gene regions in N2A cells, Bbx knockdown (T0872), replicate 2


description: L4_W102: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dus3l knockdown (T0870), replicate 2


description: L4_W101: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snrnp35 knockdown (T0869), replicate 2


description: L4_W106: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zc3hav1l knockdown (T0874), replicate 2


description: L4_W108: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cwc22 knockdown (T0876), replicate 2


description: L4_W122: SPAR-seq of 108 multi-exon gene regions in N2A cells, Actr5 knockdown (T0890), replicate 2


description: L4_W099: SPAR-seq of 108 multi-exon gene regions in N2A cells, Adam5 knockdown (T0867), replicate 2


description: L4_W105: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zc3h11a knockdown (T0873), replicate 2


description: L4_W118: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snd1 knockdown (T0886), replicate 2


description: L4_W098: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp809 knockdown (T0866), replicate 2


description: L4_W100: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ino80e knockdown (T0868), replicate 2


description: L4_W097: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0865), replicate 2


description: L4_W095: SPAR-seq of 108 multi-exon gene regions in N2A cells, Celf5 knockdown (T0863), replicate 2


description: L4_W088: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ska1 knockdown (T0856), replicate 2


description: L4_W096: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0864), replicate 2


description: L4_W094: SPAR-seq of 108 multi-exon gene regions in N2A cells, Apitd1 knockdown (T0862), replicate 2


description: L4_W093: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zcrb1 knockdown (T0861), replicate 2


description: L4_W107: SPAR-seq of 108 multi-exon gene regions in N2A cells, Clp1 knockdown (T0875), replicate 2


description: L4_W086: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp593 knockdown (T0854), replicate 2


description: L4_W089: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zc3h15 knockdown (T0857), replicate 2


description: L4_W087: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zc3h6 knockdown (T0855), replicate 2


description: L4_W085: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tspyl4 knockdown (T0853), replicate 2


description: L4_W080: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zcchc17 knockdown (T0848), replicate 2


description: L4_W083: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smchd1 knockdown (T0851), replicate 2


description: L4_W079: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nsun6 knockdown (T0847), replicate 2


description: L4_W074: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zkscan17 knockdown (T0842), replicate 2


description: L4_W075: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rnf181 knockdown (T0843), replicate 2


description: L4_W092: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nkap knockdown (T0860), replicate 2


description: L4_W082: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zcchc12 knockdown (T0850), replicate 2


description: L4_W084: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phf14 knockdown (T0852), replicate 2


description: L4_W078: SPAR-seq of 108 multi-exon gene regions in N2A cells, Isy1 knockdown (T0846), replicate 2


description: L4_W077: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp566 knockdown (T0845), replicate 2


description: L4_W072: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zcchc7 knockdown (T0840), replicate 2


description: L4_W076: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zmat5 knockdown (T0844), replicate 2


description: L4_W090: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phf23 knockdown (T0858), replicate 2


description: L4_W091: SPAR-seq of 108 multi-exon gene regions in N2A cells, 2810432D09Rik knockdown (T0859), replicate 2


description: L4_W103: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pstk knockdown (T0871), replicate 2


description: L4_W114: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp868 knockdown (T0882), replicate 2


description: L4_W070: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp672 knockdown (T0838), replicate 2


description: L4_W081: SPAR-seq of 108 multi-exon gene regions in N2A cells, Spty2d1 knockdown (T0849), replicate 2


description: L4_W069: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zc3h13 knockdown (T0837), replicate 2


description: L4_W067: SPAR-seq of 108 multi-exon gene regions in N2A cells, 2410141K09Rik knockdown (T0835), replicate 2


description: L4_W071: SPAR-seq of 108 multi-exon gene regions in N2A cells, Skiv2l2 knockdown (T0839), replicate 2


description: L4_W065: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp954 knockdown (T0833), replicate 2


description: L4_W066: SPAR-seq of 108 multi-exon gene regions in N2A cells, 2610305D13Rik knockdown (T0834), replicate 2


description: L4_W068: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cenpm knockdown (T0836), replicate 2


description: L4_W063: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dscc1 knockdown (T0831), replicate 2


description: L4_W053: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp799 knockdown (T0821), replicate 2


description: L4_W057: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0825), replicate 2


description: L4_W054: SPAR-seq of 108 multi-exon gene regions in N2A cells, N6amt2 knockdown (T0822), replicate 2


description: L4_W062: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prpf6 knockdown (T0830), replicate 2


description: L4_W060: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rnpc3 knockdown (T0828), replicate 2


description: L4_W058: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm42 knockdown (T0826), replicate 2


description: L4_W059: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cdkn2aip knockdown (T0827), replicate 2


description: L4_W051: SPAR-seq of 108 multi-exon gene regions in N2A cells, N6amt1 knockdown (T0819), replicate 2


description: L4_W052: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hnrnpa3 knockdown (T0820), replicate 2


description: L4_W064: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hnrnpf knockdown (T0832), replicate 2


description: L4_W056: SPAR-seq of 108 multi-exon gene regions in N2A cells, Spc24 knockdown (T0824), replicate 2


description: L4_W055: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hormad1 knockdown (T0823), replicate 2


description: L4_W047: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tox4 knockdown (T0815), replicate 2


description: L4_W050: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mis12 knockdown (T0818), replicate 2


description: L4_W048: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ube2f knockdown (T0816), replicate 2


description: L4_W049: SPAR-seq of 108 multi-exon gene regions in N2A cells, Specc1l knockdown (T0817), replicate 2


description: L4_W073: SPAR-seq of 108 multi-exon gene regions in N2A cells, Gpatch4 knockdown (T0841), replicate 2


description: L4_W042: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbmx2 knockdown (T0810), replicate 2


description: L4_W040: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm12b knockdown (T0808), replicate 2


description: L4_W039: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0807), replicate 2


description: L4_W045: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0813), replicate 2


description: L4_W043: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pabpc6 knockdown (T0811), replicate 2


description: L4_W061: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppwd1 knockdown (T0829), replicate 2


description: L4_W041: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sohlh2 knockdown (T0809), replicate 2


description: L4_W038: SPAR-seq of 108 multi-exon gene regions in N2A cells, Wdr77 knockdown (T0806), replicate 2


description: L4_W037: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hnrpll knockdown (T0805), replicate 2


description: L4_W033: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sltm knockdown (T0801), replicate 2


description: L4_W034: SPAR-seq of 108 multi-exon gene regions in N2A cells, Larp6 knockdown (T0802), replicate 2


description: L4_W036: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cdca5 knockdown (T0804), replicate 2


description: L4_W030: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hepacam knockdown (T0798), replicate 2


description: L4_W024: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cenpq knockdown (T0792), replicate 2


description: L4_W026: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nsl1 knockdown (T0794), replicate 2


description: L4_W027: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0795), replicate 2


description: L4_W044: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm4b knockdown (T0812), replicate 2


description: L4_W032: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ccdc99 knockdown (T0800), replicate 2


description: L4_W017: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ddx26b knockdown (T0785), replicate 2


description: L4_W025: SPAR-seq of 108 multi-exon gene regions in N2A cells, Noa1 knockdown (T0793), replicate 2


description: L4_W031: SPAR-seq of 108 multi-exon gene regions in N2A cells, Toe1 knockdown (T0799), replicate 2


description: L4_W028: SPAR-seq of 108 multi-exon gene regions in N2A cells, 2610101N10Rik knockdown (T0796), replicate 2


description: L4_W016: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mphosph8 knockdown (T0784), replicate 2


description: L4_W023: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srek1ip1 knockdown (T0791), replicate 2


description: L4_W046: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snrnp25 knockdown (T0814), replicate 2


description: L4_W020: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ddx17 knockdown (T0788), replicate 2


description: L4_W019: SPAR-seq of 108 multi-exon gene regions in N2A cells, Chd8 knockdown (T0787), replicate 2


description: L4_W021: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp710 knockdown (T0789), replicate 2


description: L4_W018: SPAR-seq of 108 multi-exon gene regions in N2A cells, Setd5 knockdown (T0786), replicate 2


description: L4_W015: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp688 knockdown (T0783), replicate 2


description: L4_W035: SPAR-seq of 108 multi-exon gene regions in N2A cells, Swi5 knockdown (T0803), replicate 2


description: L4_W022: SPAR-seq of 108 multi-exon gene regions in N2A cells, Paf1 knockdown (T0790), replicate 2


description: L4_W014: SPAR-seq of 108 multi-exon gene regions in N2A cells, Stox2 knockdown (T0782), replicate 2


description: L4_W029: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rcc2 knockdown (T0797), replicate 2


description: L4_W013: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nup43 knockdown (T0781), replicate 2


description: L4_W012: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ncapd2 knockdown (T0780), replicate 2


description: L4_W011: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zmat2 knockdown (T0779), replicate 2


description: L4_W009: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm25 knockdown (T0777), replicate 2


description: L4_W010: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mael knockdown (T0778), replicate 2


description: L4_W001: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0769), replicate 2


description: L3_W767: SPAR-seq of 108 multi-exon gene regions in N2A cells, 0610007P08Rik knockdown (T0767), replicate 2


description: L4_W005: SPAR-seq of 108 multi-exon gene regions in N2A cells, 2610027L16Rik knockdown (T0773), replicate 2


description: L4_W008: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp647 knockdown (T0776), replicate 2


description: L3_W765: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mapk1 knockdown (T0765), replicate 2


description: L4_W007: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zbtb8a knockdown (T0775), replicate 2


description: L3_W764: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zcchc18 knockdown (T0764), replicate 2


description: L4_W003: SPAR-seq of 108 multi-exon gene regions in N2A cells, Puf60 knockdown (T0771), replicate 2


description: L4_W004: SPAR-seq of 108 multi-exon gene regions in N2A cells, Glyr1 knockdown (T0772), replicate 2


description: L3_W762: SPAR-seq of 108 multi-exon gene regions in N2A cells, Syce2 knockdown (T0762), replicate 2


description: L3_W759: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zwilch knockdown (T0759), replicate 2


description: L3_W758: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sarnp knockdown (T0758), replicate 2


description: L3_W760: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mak16 knockdown (T0760), replicate 2


description: L3_W768: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0768), replicate 2


description: L3_W766: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srpk1 knockdown (T0766), replicate 2


description: L3_W763: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ftsjd2 knockdown (T0763), replicate 2


description: L3_W756: SPAR-seq of 108 multi-exon gene regions in N2A cells, Thap3 knockdown (T0756), replicate 2


description: L3_W752: SPAR-seq of 108 multi-exon gene regions in N2A cells, Raver1 knockdown (T0752), replicate 2


description: L4_W006: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp623 knockdown (T0774), replicate 2


description: L3_W750: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mfsd11 knockdown (T0750), replicate 2


description: L3_W757: SPAR-seq of 108 multi-exon gene regions in N2A cells, Arrb1 knockdown (T0757), replicate 2


description: L3_W761: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ints12 knockdown (T0761), replicate 2


description: L3_W755: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ralyl knockdown (T0755), replicate 2


description: L3_W743: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm15b knockdown (T0743), replicate 2


description: L3_W754: SPAR-seq of 108 multi-exon gene regions in N2A cells, Gsg2 knockdown (T0754), replicate 2


description: L3_W741: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm43 knockdown (T0741), replicate 2


description: L3_W740: SPAR-seq of 108 multi-exon gene regions in N2A cells, Plk1 knockdown (T0740), replicate 2


description: L4_W002: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tut1 knockdown (T0770), replicate 2


description: L3_W738: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sf3b5 knockdown (T0738), replicate 2


description: L3_W737: SPAR-seq of 108 multi-exon gene regions in N2A cells, Thoc7 knockdown (T0737), replicate 2


description: L3_W751: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prpf38a knockdown (T0751), replicate 2


description: L3_W735: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mapk3 knockdown (T0735), replicate 2


description: L3_W753: SPAR-seq of 108 multi-exon gene regions in N2A cells, Lrwd1 knockdown (T0753), replicate 2


description: L3_W748: SPAR-seq of 108 multi-exon gene regions in N2A cells, Gsk3b knockdown (T0748), replicate 2


description: L3_W749: SPAR-seq of 108 multi-exon gene regions in N2A cells, Akt1 knockdown (T0749), replicate 2


description: L3_W745: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cir1 knockdown (T0745), replicate 2


description: L3_W732: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mcmbp knockdown (T0732), replicate 2


description: L3_W744: SPAR-seq of 108 multi-exon gene regions in N2A cells, Magohb knockdown (T0744), replicate 2


description: L3_W747: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rnf113a2 knockdown (T0747), replicate 2


description: L3_W746: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pbrm1 knockdown (T0746), replicate 2


description: L3_W736: SPAR-seq of 108 multi-exon gene regions in N2A cells, Wdr83 knockdown (T0736), replicate 2


description: L3_W727: SPAR-seq of 108 multi-exon gene regions in N2A cells, 0610009D07Rik knockdown (T0727), replicate 2


description: L3_W734: SPAR-seq of 108 multi-exon gene regions in N2A cells, 2310004I24Rik knockdown (T0734), replicate 2


description: L3_W721: SPAR-seq of 108 multi-exon gene regions in N2A cells, Plk3 knockdown (T0721), replicate 2


description: L3_W742: SPAR-seq of 108 multi-exon gene regions in N2A cells, Raf1 knockdown (T0742), replicate 2


description: L3_W733: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prpf4b knockdown (T0733), replicate 2


description: L3_W729: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0729), replicate 2


description: L3_W724: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbpms2 knockdown (T0724), replicate 2


description: L3_W731: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rrp7a knockdown (T0731), replicate 2


description: L3_W717: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0717), replicate 2


description: L3_W726: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rab43 knockdown (T0726), replicate 2


description: L3_W739: SPAR-seq of 108 multi-exon gene regions in N2A cells, 2310036O22Rik knockdown (T0739), replicate 2


description: L3_W715: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dnajc17 knockdown (T0715), replicate 2


description: L3_W725: SPAR-seq of 108 multi-exon gene regions in N2A cells, Meaf6 knockdown (T0725), replicate 2


description: L3_W713: SPAR-seq of 108 multi-exon gene regions in N2A cells, 1500010J02Rik knockdown (T0713), replicate 2


description: L3_W728: SPAR-seq of 108 multi-exon gene regions in N2A cells, Iws1 knockdown (T0728), replicate 2


description: L3_W714: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm19 knockdown (T0714), replicate 2


description: L3_W719: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tdrd12 knockdown (T0719), replicate 2


description: L3_W720: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pik3r1 knockdown (T0720), replicate 2


description: L3_W722: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dsn1 knockdown (T0722), replicate 2


description: L3_W711: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0711), replicate 2


description: L3_W718: SPAR-seq of 108 multi-exon gene regions in N2A cells, Map2k2 knockdown (T0718), replicate 2


description: L3_W707: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tjp2 knockdown (T0707), replicate 2


description: L3_W716: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppp2cb knockdown (T0716), replicate 2


description: L3_W723: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cwc25 knockdown (T0723), replicate 2


description: L3_W709: SPAR-seq of 108 multi-exon gene regions in N2A cells, Calcoco1 knockdown (T0709), replicate 2


description: L3_W730: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nip7 knockdown (T0730), replicate 2


description: L3_W710: SPAR-seq of 108 multi-exon gene regions in N2A cells, Esco2 knockdown (T0710), replicate 2


description: L3_W705: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rsrc1 knockdown (T0705), replicate 2


description: L3_W708: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cwc15 knockdown (T0708), replicate 2


description: L3_W706: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rrp8 knockdown (T0706), replicate 2


description: L3_W699: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0699), replicate 2


description: L3_W696: SPAR-seq of 108 multi-exon gene regions in N2A cells, Atr knockdown (T0696), replicate 2


description: L3_W704: SPAR-seq of 108 multi-exon gene regions in N2A cells, Map2k3 knockdown (T0704), replicate 2


description: L3_W702: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prpf38b knockdown (T0702), replicate 2


description: L3_W695: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prkra knockdown (T0695), replicate 2


description: L3_W689: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kti12 knockdown (T0689), replicate 2


description: L3_W690: SPAR-seq of 108 multi-exon gene regions in N2A cells, Telo2 knockdown (T0690), replicate 2


description: L3_W691: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mapk14 knockdown (T0691), replicate 2


description: L3_W703: SPAR-seq of 108 multi-exon gene regions in N2A cells, 2310079F23Rik knockdown (T0703), replicate 2


description: L3_W712: SPAR-seq of 108 multi-exon gene regions in N2A cells, Map2k6 knockdown (T0712), replicate 2


description: L3_W701: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snrnp27 knockdown (T0701), replicate 2


description: L3_W698: SPAR-seq of 108 multi-exon gene regions in N2A cells, Unkl knockdown (T0698), replicate 2


description: L3_W700: SPAR-seq of 108 multi-exon gene regions in N2A cells, Obfc1 knockdown (T0700), replicate 2


description: L3_W697: SPAR-seq of 108 multi-exon gene regions in N2A cells, Larp1b knockdown (T0697), replicate 2


description: L3_W692: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eif2ak2 knockdown (T0692), replicate 2


description: L3_W680: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srpk3 knockdown (T0680), replicate 2


description: L3_W694: SPAR-seq of 108 multi-exon gene regions in N2A cells, Seh1l knockdown (T0694), replicate 2


description: L3_W682: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppp2ca knockdown (T0682), replicate 2


description: L3_W688: SPAR-seq of 108 multi-exon gene regions in N2A cells, Suds3 knockdown (T0688), replicate 2


description: L3_W687: SPAR-seq of 108 multi-exon gene regions in N2A cells, Leprel4 knockdown (T0687), replicate 2


description: L3_W693: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srpk2 knockdown (T0693), replicate 2


description: L3_W678: SPAR-seq of 108 multi-exon gene regions in N2A cells, Map2k1 knockdown (T0678), replicate 2


description: L3_W685: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm26 knockdown (T0685), replicate 2


description: L3_W671: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zkscan5 knockdown (T0671), replicate 2


description: L3_W675: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nsmce2 knockdown (T0675), replicate 2


description: L3_W686: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tctex1d2 knockdown (T0686), replicate 2


description: L3_W673: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0673), replicate 2


description: L3_W684: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smndc1 knockdown (T0684), replicate 2


description: L3_W681: SPAR-seq of 108 multi-exon gene regions in N2A cells, Fam33a knockdown (T0681), replicate 2


description: L3_W676: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pno1 knockdown (T0676), replicate 2


description: L3_W674: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srrm4 knockdown (T0674), replicate 2


description: L3_W677: SPAR-seq of 108 multi-exon gene regions in N2A cells, Esrp1 knockdown (T0677), replicate 2


description: L3_W683: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cenpp knockdown (T0683), replicate 2


description: L3_W672: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0672), replicate 2


description: L3_W679: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp830 knockdown (T0679), replicate 2


description: L3_W670: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ube2b knockdown (T0670), replicate 2


description: L3_W667: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mknk2 knockdown (T0667), replicate 2


description: L3_W669: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cdk4 knockdown (T0669), replicate 2


description: L3_W665: SPAR-seq of 108 multi-exon gene regions in N2A cells, Csnk1a1 knockdown (T0665), replicate 2


description: L3_W662: SPAR-seq of 108 multi-exon gene regions in N2A cells, Whsc1 knockdown (T0662), replicate 2


description: L3_W668: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ubtf knockdown (T0668), replicate 2


description: L3_W663: SPAR-seq of 108 multi-exon gene regions in N2A cells, Patz1 knockdown (T0663), replicate 2


description: L3_W661: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dapk3 knockdown (T0661), replicate 2


description: L3_W664: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zbtb7a knockdown (T0664), replicate 2


description: L3_W647: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp422 knockdown (T0647), replicate 2


description: L3_W644: SPAR-seq of 108 multi-exon gene regions in N2A cells, Exosc10 knockdown (T0644), replicate 2


description: L3_W650: SPAR-seq of 108 multi-exon gene regions in N2A cells, Uhrf1 knockdown (T0650), replicate 2


description: L3_W656: SPAR-seq of 108 multi-exon gene regions in N2A cells, Whsc1l1 knockdown (T0656), replicate 2


description: L3_W649: SPAR-seq of 108 multi-exon gene regions in N2A cells, Xrcc5 knockdown (T0649), replicate 2


description: L3_W652: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp7 knockdown (T0652), replicate 2


description: L3_W641: SPAR-seq of 108 multi-exon gene regions in N2A cells, Fn3krp knockdown (T0641), replicate 2


description: L3_W642: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ube2v2 knockdown (T0642), replicate 2


description: L3_W658: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ttf2 knockdown (T0658), replicate 2


description: L3_W651: SPAR-seq of 108 multi-exon gene regions in N2A cells, Dgkq knockdown (T0651), replicate 2


description: L3_W646: SPAR-seq of 108 multi-exon gene regions in N2A cells, Aurkb knockdown (T0646), replicate 2


description: L3_W653: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ube2g1 knockdown (T0653), replicate 2


description: L3_W648: SPAR-seq of 108 multi-exon gene regions in N2A cells, Trim24 knockdown (T0648), replicate 2


description: L3_W654: SPAR-seq of 108 multi-exon gene regions in N2A cells, Akap1 knockdown (T0654), replicate 2


description: L3_W657: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cdk13 knockdown (T0657), replicate 2


description: L3_W659: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cdk12 knockdown (T0659), replicate 2


description: L3_W666: SPAR-seq of 108 multi-exon gene regions in N2A cells, Taf1 knockdown (T0666), replicate 2


description: L3_W643: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zeb2 knockdown (T0643), replicate 2


description: L3_W660: SPAR-seq of 108 multi-exon gene regions in N2A cells, Atm knockdown (T0660), replicate 2


description: L3_W655: SPAR-seq of 108 multi-exon gene regions in N2A cells, Xpo1 knockdown (T0655), replicate 2


description: L3_W645: SPAR-seq of 108 multi-exon gene regions in N2A cells, Yy1 knockdown (T0645), replicate 2


description: L3_W640: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pik3ca knockdown (T0640), replicate 2


description: L3_W639: SPAR-seq of 108 multi-exon gene regions in N2A cells, Uhmk1 knockdown (T0639), replicate 2


description: L3_W638: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ube2m knockdown (T0638), replicate 2


description: L3_W634: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zw10 knockdown (T0634), replicate 2


description: L3_W617: SPAR-seq of 108 multi-exon gene regions in N2A cells, Csnk2a1 knockdown (T0617), replicate 2


description: L3_W625: SPAR-seq of 108 multi-exon gene regions in N2A cells, Chek1 knockdown (T0625), replicate 2


description: L3_W628: SPAR-seq of 108 multi-exon gene regions in N2A cells, Aurkc knockdown (T0628), replicate 2


description: L3_W629: SPAR-seq of 108 multi-exon gene regions in N2A cells, Clk3 knockdown (T0629), replicate 2


description: L3_W621: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0621), replicate 2


description: L3_W635: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp36l1 knockdown (T0635), replicate 2


description: L3_W626: SPAR-seq of 108 multi-exon gene regions in N2A cells, Brd2 knockdown (T0626), replicate 2


description: L3_W618: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tpr knockdown (T0618), replicate 2


description: L3_W613: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mknk1 knockdown (T0613), replicate 2


description: L3_W624: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tubg1 knockdown (T0624), replicate 2


description: L3_W630: SPAR-seq of 108 multi-exon gene regions in N2A cells, Trim33 knockdown (T0630), replicate 2


description: L3_W631: SPAR-seq of 108 multi-exon gene regions in N2A cells, Traf6 knockdown (T0631), replicate 2


description: L3_W637: SPAR-seq of 108 multi-exon gene regions in N2A cells, Brwd1 knockdown (T0637), replicate 2


description: L3_W636: SPAR-seq of 108 multi-exon gene regions in N2A cells, Uhrf2 knockdown (T0636), replicate 2


description: L3_W614: SPAR-seq of 108 multi-exon gene regions in N2A cells, Usf2 knockdown (T0614), replicate 2


description: L3_W627: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp523 knockdown (T0627), replicate 2


description: L3_W612: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zmat3 knockdown (T0612), replicate 2


description: L3_W619: SPAR-seq of 108 multi-exon gene regions in N2A cells, Akt2 knockdown (T0619), replicate 2


description: L3_W620: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ube2d2 knockdown (T0620), replicate 2


description: L3_W622: SPAR-seq of 108 multi-exon gene regions in N2A cells, Bub1 knockdown (T0622), replicate 2


description: L3_W611: SPAR-seq of 108 multi-exon gene regions in N2A cells, Clk4 knockdown (T0611), replicate 2


description: L3_W632: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pfkfb3 knockdown (T0632), replicate 2


description: L3_W633: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0633), replicate 2


description: L3_W615: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0615), replicate 2


description: L3_W616: SPAR-seq of 108 multi-exon gene regions in N2A cells, Akap8 knockdown (T0616), replicate 2


description: L3_W623: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zmynd11 knockdown (T0623), replicate 2


description: L3_W609: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zic3 knockdown (T0609), replicate 2


description: L3_W610: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zbtb17 knockdown (T0610), replicate 2


description: L3_W607: SPAR-seq of 108 multi-exon gene regions in N2A cells, Clk2 knockdown (T0607), replicate 2


description: L3_W606: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp161 knockdown (T0606), replicate 2


description: L3_W608: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ube2r2 knockdown (T0608), replicate 2


description: L3_W600: SPAR-seq of 108 multi-exon gene regions in N2A cells, Wt1 knockdown (T0600), replicate 2


description: L3_W604: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ube2c knockdown (T0604), replicate 2


description: L3_W605: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nek2 knockdown (T0605), replicate 2


description: L3_W602: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ube2l6 knockdown (T0602), replicate 2


description: L3_W599: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ube2h knockdown (T0599), replicate 2


description: L3_W596: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp191 knockdown (T0596), replicate 2


description: L3_W601: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ube2s knockdown (T0601), replicate 2


description: L3_W597: SPAR-seq of 108 multi-exon gene regions in N2A cells, Braf knockdown (T0597), replicate 2


description: L3_W589: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp41 knockdown (T0589), replicate 2


description: L3_W590: SPAR-seq of 108 multi-exon gene regions in N2A cells, Xbp1 knockdown (T0590), replicate 2


description: L3_W603: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0603), replicate 2


description: L3_W592: SPAR-seq of 108 multi-exon gene regions in N2A cells, Uchl5 knockdown (T0592), replicate 2


description: L3_W584: SPAR-seq of 108 multi-exon gene regions in N2A cells, Trp53 knockdown (T0584), replicate 2


description: L3_W586: SPAR-seq of 108 multi-exon gene regions in N2A cells, Bub1b knockdown (T0586), replicate 2


description: L3_W598: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ube2e1 knockdown (T0598), replicate 2


description: L3_W593: SPAR-seq of 108 multi-exon gene regions in N2A cells, Trim28 knockdown (T0593), replicate 2


description: L3_W587: SPAR-seq of 108 multi-exon gene regions in N2A cells, Cdk11b knockdown (T0587), replicate 2


description: L3_W594: SPAR-seq of 108 multi-exon gene regions in N2A cells, Eif4h knockdown (T0594), replicate 2


description: L3_W591: SPAR-seq of 108 multi-exon gene regions in N2A cells, Usp3 knockdown (T0591), replicate 2


description: L3_W581: SPAR-seq of 108 multi-exon gene regions in N2A cells, Trp53bp1 knockdown (T0581), replicate 2


description: L3_W588: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfx knockdown (T0588), replicate 2


description: L3_W583: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zfp238 knockdown (T0583), replicate 2


description: L3_W580: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tnpo1 knockdown (T0580), replicate 2


description: L3_W577: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0577), replicate 2


description: L3_W582: SPAR-seq of 108 multi-exon gene regions in N2A cells, Xrcc1 knockdown (T0582), replicate 2


description: L3_W595: SPAR-seq of 108 multi-exon gene regions in N2A cells, Usf1 knockdown (T0595), replicate 2


description: L3_W572: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smarcd1 knockdown (T0572), replicate 2


description: L3_W585: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zbtb7b knockdown (T0585), replicate 2


description: L3_W570: SPAR-seq of 108 multi-exon gene regions in N2A cells, Taf15 knockdown (T0570), replicate 2


description: L3_W576: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0576), replicate 2


description: L3_W567: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ssrp1 knockdown (T0567), replicate 2


description: L3_W569: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tdrd7 knockdown (T0569), replicate 2


description: L3_W575: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tfap4 knockdown (T0575), replicate 2


description: L3_W573: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tardbp knockdown (T0573), replicate 2


description: L3_W564: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smyd2 knockdown (T0564), replicate 2


description: L3_W559: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tia1 knockdown (T0559), replicate 2


description: L3_W556: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tfpt knockdown (T0556), replicate 2


description: L3_W562: SPAR-seq of 108 multi-exon gene regions in N2A cells, Synj2 knockdown (T0562), replicate 2


description: L3_W563: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tcf3 knockdown (T0563), replicate 2


description: L3_W561: SPAR-seq of 108 multi-exon gene regions in N2A cells, Top2a knockdown (T0561), replicate 2


description: L3_W553: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smarcd2 knockdown (T0553), replicate 2


description: L3_W558: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srf knockdown (T0558), replicate 2


description: L3_W578: SPAR-seq of 108 multi-exon gene regions in N2A cells, Csnk2a2 knockdown (T0578), replicate 2


description: L3_W560: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sept2 knockdown (T0560), replicate 2


description: L3_W579: SPAR-seq of 108 multi-exon gene regions in N2A cells, Araf knockdown (T0579), replicate 2


description: L3_W566: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smc4 knockdown (T0566), replicate 2


description: L3_W565: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tinf2 knockdown (T0565), replicate 2


description: L3_W554: SPAR-seq of 108 multi-exon gene regions in N2A cells, Supt6h knockdown (T0554), replicate 2


description: L3_W555: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smn1 knockdown (T0555), replicate 2


description: L3_W571: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tiparp knockdown (T0571), replicate 2


description: L3_W574: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smarce1 knockdown (T0574), replicate 2


description: L3_W568: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sox9 knockdown (T0568), replicate 2


description: L3_W557: SPAR-seq of 108 multi-exon gene regions in N2A cells, Syn1 knockdown (T0557), replicate 2


description: L3_W545: SPAR-seq of 108 multi-exon gene regions in N2A cells, Setd7 knockdown (T0545), replicate 2


description: L3_W552: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tbl1x knockdown (T0552), replicate 2


description: L3_W543: SPAR-seq of 108 multi-exon gene regions in N2A cells, Suv39h1 knockdown (T0543), replicate 2


description: L3_W542: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tef knockdown (T0542), replicate 2


description: L3_W541: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tbx3 knockdown (T0541), replicate 2


description: L3_W544: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tial1 knockdown (T0544), replicate 2


description: L3_W551: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snrpn knockdown (T0551), replicate 2


description: L3_W539: SPAR-seq of 108 multi-exon gene regions in N2A cells, Top3a knockdown (T0539), replicate 2


description: L3_W546: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sox4 knockdown (T0546), replicate 2


description: L3_W549: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tada3 knockdown (T0549), replicate 2


description: L3_W547: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tcf12 knockdown (T0547), replicate 2


description: L3_W548: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tax1bp1 knockdown (T0548), replicate 2


description: L3_W540: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srrm2 knockdown (T0540), replicate 2


description: L3_W550: SPAR-seq of 108 multi-exon gene regions in N2A cells, Terf2 knockdown (T0550), replicate 2


description: L3_W530: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sox8 knockdown (T0530), replicate 2


description: L3_W528: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tcerg1 knockdown (T0528), replicate 2


description: L3_W527: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tfam knockdown (T0527), replicate 2


description: L3_W533: SPAR-seq of 108 multi-exon gene regions in N2A cells, Slc6a8 knockdown (T0533), replicate 2


description: L3_W535: SPAR-seq of 108 multi-exon gene regions in N2A cells, Syncrip knockdown (T0535), replicate 2


description: L3_W537: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0537), replicate 2


description: L3_W524: SPAR-seq of 108 multi-exon gene regions in N2A cells, Terf2ip knockdown (T0524), replicate 2


description: L3_W526: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tarbp2 knockdown (T0526), replicate 2


description: L3_W532: SPAR-seq of 108 multi-exon gene regions in N2A cells, Top2b knockdown (T0532), replicate 2


description: L3_W536: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smarcc1 knockdown (T0536), replicate 2


description: L3_W538: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sos1 knockdown (T0538), replicate 2


description: L3_W520: SPAR-seq of 108 multi-exon gene regions in N2A cells, Stat6 knockdown (T0520), replicate 2


description: L3_W523: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tlr5 knockdown (T0523), replicate 2


description: L3_W518: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tcp1 knockdown (T0518), replicate 2


description: L3_W534: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sox2 knockdown (T0534), replicate 2


description: L3_W525: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0525), replicate 2


description: L3_W515: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tcf4 knockdown (T0515), replicate 2


description: L3_W531: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prmt5 knockdown (T0531), replicate 2


description: L3_W519: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0519), replicate 2


description: L3_W521: SPAR-seq of 108 multi-exon gene regions in N2A cells, Set knockdown (T0521), replicate 2


description: L3_W517: SPAR-seq of 108 multi-exon gene regions in N2A cells, Timeless knockdown (T0517), replicate 2


description: L3_W512: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tfdp1 knockdown (T0512), replicate 2


description: L3_W509: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sp3 knockdown (T0509), replicate 2


description: L3_W507: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0507), replicate 2


description: L3_W516: SPAR-seq of 108 multi-exon gene regions in N2A cells, Supt5h knockdown (T0516), replicate 2


description: L3_W506: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sp1 knockdown (T0506), replicate 2


description: L3_W513: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sip1 knockdown (T0513), replicate 2


description: L3_W508: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tbx1 knockdown (T0508), replicate 2


description: L3_W529: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sp2 knockdown (T0529), replicate 2


description: L3_W511: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sox15 knockdown (T0511), replicate 2


description: L3_W522: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tbx2 knockdown (T0522), replicate 2


description: L3_W514: SPAR-seq of 108 multi-exon gene regions in N2A cells, Taf12 knockdown (T0514), replicate 2


description: L3_W504: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tcf7l1 knockdown (T0504), replicate 2


description: L3_W500: SPAR-seq of 108 multi-exon gene regions in N2A cells, Son knockdown (T0500), replicate 2


description: L3_W495: SPAR-seq of 108 multi-exon gene regions in N2A cells, Top1 knockdown (T0495), replicate 2


description: L3_W494: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sirt1 knockdown (T0494), replicate 2


description: L3_W510: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smarcal1 knockdown (T0510), replicate 2


description: L3_W499: SPAR-seq of 108 multi-exon gene regions in N2A cells, Terf1 knockdown (T0499), replicate 2


description: L3_W503: SPAR-seq of 108 multi-exon gene regions in N2A cells, Suv39h2 knockdown (T0503), replicate 2


description: L3_W498: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tcf15 knockdown (T0498), replicate 2


description: L3_W502: SPAR-seq of 108 multi-exon gene regions in N2A cells, Taf11 knockdown (T0502), replicate 2


description: L3_W505: SPAR-seq of 108 multi-exon gene regions in N2A cells, Top3b knockdown (T0505), replicate 2


description: L3_W489: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tcea3 knockdown (T0489), replicate 2


description: L3_W492: SPAR-seq of 108 multi-exon gene regions in N2A cells, Topors knockdown (T0492), replicate 2


description: L3_W485: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tcfl5 knockdown (T0485), replicate 2


description: L3_W487: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tcea1 knockdown (T0487), replicate 2


description: L3_W483: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sin3a knockdown (T0483), replicate 2


description: L3_W496: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tada2a knockdown (T0496), replicate 2


description: L3_W488: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smarcb1 knockdown (T0488), replicate 2


description: L3_W491: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tcf7 knockdown (T0491), replicate 2


description: L3_W479: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ran knockdown (T0479), replicate 2


description: L3_W497: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tceb3 knockdown (T0497), replicate 2


description: L3_W490: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tlr2 knockdown (T0490), replicate 2


description: L3_W480: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0480), replicate 2


description: L3_W493: SPAR-seq of 108 multi-exon gene regions in N2A cells, Thrap3 knockdown (T0493), replicate 2


description: L3_W477: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbbp7 knockdown (T0477), replicate 2


description: L3_W476: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rad54l knockdown (T0476), replicate 2


description: L3_W486: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sept7 knockdown (T0486), replicate 2


description: L3_W501: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sirt2 knockdown (T0501), replicate 2


description: L3_W482: SPAR-seq of 108 multi-exon gene regions in N2A cells, Thoc1 knockdown (T0482), replicate 2


description: L3_W469: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rhobtb2 knockdown (T0469), replicate 2


description: L3_W484: SPAR-seq of 108 multi-exon gene regions in N2A cells, Topbp1 knockdown (T0484), replicate 2


description: L3_W470: SPAR-seq of 108 multi-exon gene regions in N2A cells, Zbtb32 knockdown (T0470), replicate 2


description: L3_W467: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rpl5 knockdown (T0467), replicate 2


description: L3_W473: SPAR-seq of 108 multi-exon gene regions in N2A cells, Psen1 knockdown (T0473), replicate 2


description: L3_W478: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ring1 knockdown (T0478), replicate 2


description: L3_W464: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rest knockdown (T0464), replicate 2


description: L3_W474: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm11 knockdown (T0474), replicate 2


description: L3_W461: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rnpep knockdown (T0461), replicate 2


description: L3_W475: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm15 knockdown (T0475), replicate 2


description: L3_W472: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rxrb knockdown (T0472), replicate 2


description: L3_W468: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppp1cc knockdown (T0468), replicate 2


description: L3_W466: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rad50 knockdown (T0466), replicate 2


description: L3_W481: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0481), replicate 2


description: L3_W455: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hltf knockdown (T0455), replicate 2


description: L3_W471: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pole knockdown (T0471), replicate 2


description: L3_W456: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm6 knockdown (T0456), replicate 2


description: L3_W465: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pms1 knockdown (T0465), replicate 2


description: L3_W452: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbm5 knockdown (T0452), replicate 2


description: L3_W454: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prdm5 knockdown (T0454), replicate 2


description: L3_W460: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srsf7 knockdown (T0460), replicate 2


description: L3_W448: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sart1 knockdown (T0448), replicate 2


description: L3_W459: SPAR-seq of 108 multi-exon gene regions in N2A cells, Setdb1 knockdown (T0459), replicate 2


description: L3_W451: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sall1 knockdown (T0451), replicate 2


description: L3_W457: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pcgf2 knockdown (T0457), replicate 2


description: L3_W462: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smarcad1 knockdown (T0462), replicate 2


description: L3_W453: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppp4r2 knockdown (T0453), replicate 2


description: L3_W458: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pot1a knockdown (T0458), replicate 2


description: L3_W463: SPAR-seq of 108 multi-exon gene regions in N2A cells, Upf1 knockdown (T0463), replicate 2


description: L3_W450: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pola1 knockdown (T0450), replicate 2


description: L3_W445: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pop7 knockdown (T0445), replicate 2


description: L3_W444: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srsf2 knockdown (T0444), replicate 2


description: L3_W446: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppp2r5c knockdown (T0446), replicate 2


description: L3_W449: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbms2 knockdown (T0449), replicate 2


description: L3_W443: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rec8 knockdown (T0443), replicate 2


description: L3_W447: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pold1 knockdown (T0447), replicate 2


description: L3_W440: SPAR-seq of 108 multi-exon gene regions in N2A cells, Polr2b knockdown (T0440), replicate 2


description: L3_W438: SPAR-seq of 108 multi-exon gene regions in N2A cells, Slbp knockdown (T0438), replicate 2


description: L3_W442: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srsf3 knockdown (T0442), replicate 2


description: L3_W431: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rad21 knockdown (T0431), replicate 2


description: L3_W432: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rarg knockdown (T0432), replicate 2


description: L3_W435: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ruvbl2 knockdown (T0435), replicate 2


description: L3_W439: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rara knockdown (T0439), replicate 2


description: L3_W429: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0429), replicate 2


description: L3_W434: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rad18 knockdown (T0434), replicate 2


description: L3_W437: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppp1r9b knockdown (T0437), replicate 2


description: L3_W433: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sall4 knockdown (T0433), replicate 2


description: L3_W425: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ptbp1 knockdown (T0425), replicate 2


description: L3_W430: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rfc1 knockdown (T0430), replicate 2


description: L3_W441: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0441), replicate 2


description: L3_W421: SPAR-seq of 108 multi-exon gene regions in N2A cells, Piwil2 knockdown (T0421), replicate 2


description: L3_W426: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rps3 knockdown (T0426), replicate 2


description: L3_W419: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rad17 knockdown (T0419), replicate 2


description: L3_W420: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppp1r10 knockdown (T0420), replicate 2


description: L3_W423: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0423), replicate 2


description: L3_W422: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smarca2 knockdown (T0422), replicate 2


description: L3_W427: SPAR-seq of 108 multi-exon gene regions in N2A cells, Snupn knockdown (T0427), replicate 2


description: L3_W418: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbmy1a1 knockdown (T0418), replicate 2


description: L3_W414: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sfswap knockdown (T0414), replicate 2


description: L3_W417: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sub1 knockdown (T0417), replicate 2


description: L3_W413: SPAR-seq of 108 multi-exon gene regions in N2A cells, Psen2 knockdown (T0413), replicate 2


description: L3_W416: SPAR-seq of 108 multi-exon gene regions in N2A cells, Jmjd6 knockdown (T0416), replicate 2


description: L3_W415: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sall3 knockdown (T0415), replicate 2


description: L3_W436: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sf3a3 knockdown (T0436), replicate 2


description: L3_W412: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppp2r1a knockdown (T0412), replicate 2


description: L3_W428: SPAR-seq of 108 multi-exon gene regions in N2A cells, Polb knockdown (T0428), replicate 2


description: L3_W411: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0411), replicate 2


description: L3_W410: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pnn knockdown (T0410), replicate 2


description: L3_W424: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pprc1 knockdown (T0424), replicate 2


description: L3_W408: SPAR-seq of 108 multi-exon gene regions in N2A cells, Polr2g knockdown (T0408), replicate 2


description: L3_W404: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppp2r5a knockdown (T0404), replicate 2


description: L3_W405: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rfc4 knockdown (T0405), replicate 2


description: L3_W409: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbbp4 knockdown (T0409), replicate 2


description: L3_W406: SPAR-seq of 108 multi-exon gene regions in N2A cells, Riok2 knockdown (T0406), replicate 2


description: L3_W401: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rad51 knockdown (T0401), replicate 2


description: L3_W402: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rbms1 knockdown (T0402), replicate 2


description: L3_W407: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rnf8 knockdown (T0407), replicate 2


description: L3_W397: SPAR-seq of 108 multi-exon gene regions in N2A cells, Piwil1 knockdown (T0397), replicate 2


description: L3_W396: SPAR-seq of 108 multi-exon gene regions in N2A cells, Poll knockdown (T0396), replicate 2


description: L3_W399: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prpf8 knockdown (T0399), replicate 2


description: L3_W392: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smarca5 knockdown (T0392), replicate 2


description: L3_W391: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pinx1 knockdown (T0391), replicate 2


description: L3_W398: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rev3l knockdown (T0398), replicate 2


description: L3_W393: SPAR-seq of 108 multi-exon gene regions in N2A cells, Polr2a knockdown (T0393), replicate 2


description: L3_W400: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pou2f1 knockdown (T0400), replicate 2


description: L3_W390: SPAR-seq of 108 multi-exon gene regions in N2A cells, Plrg1 knockdown (T0390), replicate 2


description: L3_W395: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sfpq knockdown (T0395), replicate 2


description: L3_W394: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rangap1 knockdown (T0394), replicate 2


description: L3_W389: SPAR-seq of 108 multi-exon gene regions in N2A cells, Sf3a1 knockdown (T0389), replicate 2


description: L3_W387: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prpf4 knockdown (T0387), replicate 2


description: L3_W386: SPAR-seq of 108 multi-exon gene regions in N2A cells, Smarca4 knockdown (T0386), replicate 2


description: L3_W388: SPAR-seq of 108 multi-exon gene regions in N2A cells, Rorc knockdown (T0388), replicate 2


description: L3_W384: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0384), replicate 2


description: L3_W385: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0385), replicate 2


description: L3_W383: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pabpn1 knockdown (T0383), replicate 2


description: L3_W380: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppil1 knockdown (T0380), replicate 2


description: L3_W403: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppp1r12a knockdown (T0403), replicate 2


description: L3_W382: SPAR-seq of 108 multi-exon gene regions in N2A cells, Npas1 knockdown (T0382), replicate 2


description: L3_W377: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppargc1a knockdown (T0377), replicate 2


description: L3_W372: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phox2a knockdown (T0372), replicate 2


description: L3_W378: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mtf2 knockdown (T0378), replicate 2


description: L3_W376: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mxi1 knockdown (T0376), replicate 2


description: L3_W375: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbd1 knockdown (T0375), replicate 2


description: L3_W363: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pcbp2 knockdown (T0363), replicate 2


description: L3_W365: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ncoa3 knockdown (T0365), replicate 2


description: L3_W368: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppan knockdown (T0368), replicate 2


description: L3_W367: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nfe2l2 knockdown (T0367), replicate 2


description: L3_W366: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppm1g knockdown (T0366), replicate 2


description: L3_W379: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nbn knockdown (T0379), replicate 2


description: L3_W374: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mecp2 knockdown (T0374), replicate 2


description: L3_W360: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mcm6 knockdown (T0360), replicate 2


description: L3_W371: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mcm3 knockdown (T0371), replicate 2


description: L3_W370: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nr1h2 knockdown (T0370), replicate 2


description: L3_W381: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nr2f2 knockdown (T0381), replicate 2


description: L3_W356: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prkrir knockdown (T0356), replicate 2


description: L3_W350: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nusap1 knockdown (T0350), replicate 2


description: L3_W359: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nr6a1 knockdown (T0359), replicate 2


description: L3_W352: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pcna knockdown (T0352), replicate 2


description: L3_W369: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nol3 knockdown (T0369), replicate 2


description: L3_W373: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prim1 knockdown (T0373), replicate 2


description: L3_W354: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nfe2l1 knockdown (T0354), replicate 2


description: L3_W348: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mcm7 knockdown (T0348), replicate 2


description: L3_W349: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mef2d knockdown (T0349), replicate 2


description: L3_W355: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ndel1 knockdown (T0355), replicate 2


description: L3_W351: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phf2 knockdown (T0351), replicate 2


description: L3_W357: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nr1d1 knockdown (T0357), replicate 2


description: L3_W353: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mcm4 knockdown (T0353), replicate 2


description: L3_W364: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mnt knockdown (T0364), replicate 2


description: L3_W361: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nsd1 knockdown (T0361), replicate 2


description: L3_W358: SPAR-seq of 108 multi-exon gene regions in N2A cells, Msh3 knockdown (T0358), replicate 2


description: L3_W347: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mlh1 knockdown (T0347), replicate 2


description: L3_W345: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0345), replicate 2


description: L3_W342: SPAR-seq of 108 multi-exon gene regions in N2A cells, Spen knockdown (T0342), replicate 2


description: L3_W339: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pcbp4 knockdown (T0339), replicate 2


description: L3_W340: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mcts1 knockdown (T0340), replicate 2


description: L3_W362: SPAR-seq of 108 multi-exon gene regions in N2A cells, Matr3 knockdown (T0362), replicate 2


description: L3_W337: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbd2 knockdown (T0337), replicate 2


description: L3_W341: SPAR-seq of 108 multi-exon gene regions in N2A cells, Orc6 knockdown (T0341), replicate 2


description: L3_W336: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ncor1 knockdown (T0336), replicate 2


description: L3_W343: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ndrg2 knockdown (T0343), replicate 2


description: L3_W344: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ybx1 knockdown (T0344), replicate 2


description: L3_W334: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prim2 knockdown (T0334), replicate 2


description: L3_W338: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mre11a knockdown (T0338), replicate 2


description: L3_W335: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pou6f1 knockdown (T0335), replicate 2


description: L3_W333: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0333), replicate 2


description: L3_W346: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ncor2 knockdown (T0346), replicate 2


description: L3_W331: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ndrg1 knockdown (T0331), replicate 2


description: L3_W330: SPAR-seq of 108 multi-exon gene regions in N2A cells, Paxip1 knockdown (T0330), replicate 2


description: L3_W329: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nr1d2 knockdown (T0329), replicate 2


description: L3_W328: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mcm5 knockdown (T0328), replicate 2


description: L3_W325: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nr2f6 knockdown (T0325), replicate 2


description: L3_W326: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nras knockdown (T0326), replicate 2


description: L3_W323: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbtd1 knockdown (T0323), replicate 2


description: L3_W327: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0327), replicate 2


description: L3_W324: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbd3 knockdown (T0324), replicate 2


description: L3_W320: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phip knockdown (T0320), replicate 2


description: L3_W322: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mef2a knockdown (T0322), replicate 2


description: L3_W321: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nfyb knockdown (T0321), replicate 2


description: L3_W319: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mll1 knockdown (T0319), replicate 2


description: L3_W317: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nde1 knockdown (T0317), replicate 2


description: L3_W332: SPAR-seq of 108 multi-exon gene regions in N2A cells, Msh6 knockdown (T0332), replicate 2


description: L3_W315: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0315), replicate 2


description: L3_W314: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mki67ip knockdown (T0314), replicate 2


description: L3_W316: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mcm2 knockdown (T0316), replicate 2


description: L3_W313: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nfil3 knockdown (T0313), replicate 2


description: L3_W312: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phox2b knockdown (T0312), replicate 2


description: L3_W309: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nfyc knockdown (T0309), replicate 2


description: L3_W310: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mxd4 knockdown (T0310), replicate 2


description: L3_W308: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ppargc1b knockdown (T0308), replicate 2


description: L3_W306: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kat2b knockdown (T0306), replicate 2


description: L3_W304: SPAR-seq of 108 multi-exon gene regions in N2A cells, Tgs1 knockdown (T0304), replicate 2


description: L3_W311: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mcm3ap knockdown (T0311), replicate 2


description: L3_W302: SPAR-seq of 108 multi-exon gene regions in N2A cells, Npm1 knockdown (T0302), replicate 2


description: L3_W307: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hspa4l knockdown (T0307), replicate 2


description: L3_W305: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mdm4 knockdown (T0305), replicate 2


description: L3_W303: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mllt10 knockdown (T0303), replicate 2


description: L3_W301: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pbx3 knockdown (T0301), replicate 2


description: L3_W296: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phf1 knockdown (T0296), replicate 2


description: L3_W298: SPAR-seq of 108 multi-exon gene regions in N2A cells, Phc1 knockdown (T0298), replicate 2


description: L3_W299: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pes1 knockdown (T0299), replicate 2


description: L3_W318: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nr4a1 knockdown (T0318), replicate 2


description: L3_W297: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nxt1 knockdown (T0297), replicate 2


description: L3_W294: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbd4 knockdown (T0294), replicate 2


description: L3_W289: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0289), replicate 2


description: L3_W288: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0288), replicate 2


description: L3_W287: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hspa8 knockdown (T0287), replicate 2


description: L3_W295: SPAR-seq of 108 multi-exon gene regions in N2A cells, Nktr knockdown (T0295), replicate 2


description: L3_W290: SPAR-seq of 108 multi-exon gene regions in N2A cells, Msh2 knockdown (T0290), replicate 2


description: L3_W291: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pbx2 knockdown (T0291), replicate 2


description: L3_W285: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hmgn1 knockdown (T0285), replicate 2


description: L3_W292: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mybl2 knockdown (T0292), replicate 2


description: L3_W286: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kin knockdown (T0286), replicate 2


description: L3_W300: SPAR-seq of 108 multi-exon gene regions in N2A cells, Pafah1b1 knockdown (T0300), replicate 2


description: L3_W277: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hnrnpul1 knockdown (T0277), replicate 2


description: L3_W280: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kras knockdown (T0280), replicate 2


description: L3_W282: SPAR-seq of 108 multi-exon gene regions in N2A cells, Foxd1 knockdown (T0282), replicate 2


description: L3_W279: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kif2c knockdown (T0279), replicate 2


description: L3_W275: SPAR-seq of 108 multi-exon gene regions in N2A cells, Foxj2 knockdown (T0275), replicate 2


description: L3_W293: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mki67 knockdown (T0293), replicate 2


description: L3_W281: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kifap3 knockdown (T0281), replicate 2


description: L3_W272: SPAR-seq of 108 multi-exon gene regions in N2A cells, Krr1 knockdown (T0272), replicate 2


description: L3_W274: SPAR-seq of 108 multi-exon gene regions in N2A cells, H2afx knockdown (T0274), replicate 2


description: L3_W273: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kifc5b knockdown (T0273), replicate 2


description: L3_W283: SPAR-seq of 108 multi-exon gene regions in N2A cells, Foxd3 knockdown (T0283), replicate 2


description: L3_W270: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kdm5a knockdown (T0270), replicate 2


description: L3_W269: SPAR-seq of 108 multi-exon gene regions in N2A cells, Fxr1 knockdown (T0269), replicate 2


description: L3_W278: SPAR-seq of 108 multi-exon gene regions in N2A cells, Id2 knockdown (T0278), replicate 2


description: L3_W267: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hdac5 knockdown (T0267), replicate 2


description: L3_W265: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kif22 knockdown (T0265), replicate 2


description: L3_W284: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ivns1abp knockdown (T0284), replicate 2


description: L3_W262: SPAR-seq of 108 multi-exon gene regions in N2A cells, Prmt2 knockdown (T0262), replicate 2


description: L3_W261: SPAR-seq of 108 multi-exon gene regions in N2A cells, Foxm1 knockdown (T0261), replicate 2


description: L3_W260: SPAR-seq of 108 multi-exon gene regions in N2A cells, G3bp1 knockdown (T0260), replicate 2


description: L3_W258: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hivep2 knockdown (T0258), replicate 2


description: L3_W264: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hdac7 knockdown (T0264), replicate 2


description: L3_W252: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hdac11 knockdown (T0252), replicate 2


description: L3_W266: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ndc80 knockdown (T0266), replicate 2


description: L3_W268: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hand2 knockdown (T0268), replicate 2


description: L3_W276: SPAR-seq of 108 multi-exon gene regions in N2A cells, Foxh1 knockdown (T0276), replicate 2


description: L3_W245: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hdac6 knockdown (T0245), replicate 2


description: L3_W247: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hat1 knockdown (T0247), replicate 2


description: L3_W271: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ing1 knockdown (T0271), replicate 2


description: L3_W257: SPAR-seq of 108 multi-exon gene regions in N2A cells, H2afz knockdown (T0257), replicate 2


description: L3_W243: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ilf3 knockdown (T0243), replicate 2


description: L3_W240: SPAR-seq of 108 multi-exon gene regions in N2A cells, Khdrbs1 knockdown (T0240), replicate 2


description: L3_W254: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hmga1 knockdown (T0254), replicate 2


description: L3_W256: SPAR-seq of 108 multi-exon gene regions in N2A cells, Fxr2 knockdown (T0256), replicate 2


description: L3_W249: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0249), replicate 2


description: L3_W250: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hspa2 knockdown (T0250), replicate 2


description: L3_W237: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0237), replicate 2


description: L3_W236: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kif23 knockdown (T0236), replicate 2


description: L3_W248: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hmgxb4 knockdown (T0248), replicate 2


description: L3_W235: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kdm5b knockdown (T0235), replicate 2


description: L3_W253: SPAR-seq of 108 multi-exon gene regions in N2A cells, Khsrp knockdown (T0253), replicate 2


description: L3_W244: SPAR-seq of 108 multi-exon gene regions in N2A cells, Jund knockdown (T0244), replicate 2


description: L3_W251: SPAR-seq of 108 multi-exon gene regions in N2A cells, Klf4 knockdown (T0251), replicate 2


description: L3_W242: SPAR-seq of 108 multi-exon gene regions in N2A cells, H2afy2 knockdown (T0242), replicate 2


description: L3_W241: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hdac1 knockdown (T0241), replicate 2


description: L3_W246: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ing3 knockdown (T0246), replicate 2


description: L3_W232: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hr knockdown (T0232), replicate 2


description: L3_W239: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ing4 knockdown (T0239), replicate 2


description: L3_W263: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hnrnpk knockdown (T0263), replicate 2


description: L3_W230: SPAR-seq of 108 multi-exon gene regions in N2A cells, Junb knockdown (T0230), replicate 2


description: L3_W228: SPAR-seq of 108 multi-exon gene regions in N2A cells, Fmr1 knockdown (T0228), replicate 2


description: L3_W226: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ing2 knockdown (T0226), replicate 2


description: L3_W259: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hist1h1c knockdown (T0259), replicate 2


description: L3_W238: SPAR-seq of 108 multi-exon gene regions in N2A cells, Fus knockdown (T0238), replicate 2


description: L3_W255: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hmbs knockdown (T0255), replicate 2


description: L3_W234: SPAR-seq of 108 multi-exon gene regions in N2A cells, Men1 knockdown (T0234), replicate 2


description: L3_W223: SPAR-seq of 108 multi-exon gene regions in N2A cells, H2afy knockdown (T0223), replicate 2


description: L3_W225: SPAR-seq of 108 multi-exon gene regions in N2A cells, Jun knockdown (T0225), replicate 2


description: L3_W231: SPAR-seq of 108 multi-exon gene regions in N2A cells, Mbnl1+2 knockdown (T0231), replicate 2


description: L3_W222: SPAR-seq of 108 multi-exon gene regions in N2A cells, Gtf2f2 knockdown (T0222), replicate 2


description: L3_W220: SPAR-seq of 108 multi-exon gene regions in N2A cells, H3f3b knockdown (T0220), replicate 2


description: L3_W218: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hdlbp knockdown (T0218), replicate 2


description: L3_W233: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hmgn3 knockdown (T0233), replicate 2


description: L3_W214: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hmgb3 knockdown (T0214), replicate 2


description: L3_W217: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hlcs knockdown (T0217), replicate 2


description: L3_W219: SPAR-seq of 108 multi-exon gene regions in N2A cells, mock control (T0219), replicate 2


description: L3_W213: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hdac2 knockdown (T0213), replicate 2


description: L3_W212: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hmgn2 knockdown (T0212), replicate 2


description: L3_W229: SPAR-seq of 108 multi-exon gene regions in N2A cells, Klf13 knockdown (T0229), replicate 2


description: L3_W208: SPAR-seq of 108 multi-exon gene regions in N2A cells, Kat5 knockdown (T0208), replicate 2


description: L3_W211: SPAR-seq of 108 multi-exon gene regions in N2A cells, Fosl2 knockdown (T0211), replicate 2


description: L3_W209: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hdac3 knockdown (T0209), replicate 2


description: L3_W210: SPAR-seq of 108 multi-exon gene regions in N2A cells, Ik knockdown (T0210), replicate 2


description: L3_W227: SPAR-seq of 108 multi-exon gene regions in N2A cells, Srsf10 knockdown (T0227), replicate 2


description: L3_W206: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hmg20a knockdown (T0206), replicate 2


description: L3_W207: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hdgf knockdown (T0207), replicate 2


description: L3_W205: SPAR-seq of 108 multi-exon gene regions in N2A cells, Igf2bp3 knockdown (T0205), replicate 2


description: L3_W204: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hspa5 knockdown (T0204), replicate 2


description: L3_W224: SPAR-seq of 108 multi-exon gene regions in N2A cells, Xrcc6 knockdown (T0224), replicate 2


description: L3_W201: SPAR-seq of 108 multi-exon gene regions in N2A cells, Jarid2 knockdown (T0201), replicate 2


description: L3_W200: SPAR-seq of 108 multi-exon gene regions in N2A cells, Hdac10 knockdown (T0200), replicate 2


description: L3_W203: SPAR-seq of 108 multi-exon gene regions in N2A cells, Grsf1 knockdown (T0203), replicate 2


description: L3_W198: SPAR-seq of 108 multi-exon gene regions in N2A cells, Aff2 knockdown (T0198), replicate 2


description: L3_W215: SPAR-seq of 108 multi-exon gene regions in N2A cells, Igf2bp1 knockdown (T0215), replicate 2


description: L3_W197: SPAR-seq of 108 multi-exon gene regions in N2A cells, Myod1 knockdown (T0197), replicate 2


description: L3_W193: SPAR-seq of 108 multi-exon gene regions in N2A cells, control non-targeting knockdown (T0193), replicate 2