title: WT (w/o KH2PO4, w/o K2HPO4, 13.08 mM D(-)3-phosphogylceric acid) vs. WT-rep2

description: Biological replicate 2 of 2

value: WT harvested during exponential growth phase, CGXII glucose w/o KH2PO4, w/o K2HPO4, 13.08 mM D(-)3-phosphogylceric acid, date of experiment:2002-04

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2002-04


title: Control Mint-ChIP-seq from effector memory CD8-positive, alpha-beta T cell (ENCLB479ECN)

status: Public on Jul 22 2022

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR995LKY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR995LKY
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB479ECN

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens male adult (36 years) effector memory CD8-positive, alpha-beta T primary cell

value: primary cell

tag: biosample encode accession

tag: age

value: 36 year

tag: Sex

value: male

tag: dev stage

value: adult

tag: lab

value: Bradley Bernstein, Broad

tag: source

value: John Stamatoyannopoulos

tag: link

value: ENCBS527GUI at ENCODE; https://www.encodeproject.org/ENCBS527GUI/

value: Derived from ENCODE donor ENCDO424UPQ; https://www.encodeproject.org/ENCDO424UPQ/


title: WT (750 mM NaCl, harvest after 180 min) vs. WT-rep2

type: RNA

city: Juelich

first: Tino

last: Polen

state: NRW

address: Wilhelm-Johnen-Str 1

department: IBG-1: Biotechnology

country: Germany

institute: Forschungszentrum Jülich GmbH

description: Biological replicate 2 of 3

hyb_protocol: Gene expression changes were compared using self-made PCR-product based DNA microarrays (Lange et al. 2003), custom-made DNA microarrays with 70-mer oligonucleotides obtained from Operon Biotechnologies (Cologne, Germany) or custom-made 4x44K 60mer DNA microarrays from Agilent Technologies (Waldbronn, Germany). Hybridization of mixtures of Cy3- and Cy5-labelled cDNA on the arrays and washing of the arrays were performed as described by Frunzke et al. 2008, Polen & Wendisch 2003, and Vogt et al. 2014.

scan_protocol: The fluorescence of DNA microarrays was determined at 532 nm (Cy2-dUTP) and 635 nm (Cy5-dUTP) at 5 or 10 µm resolution with a GenePix 4000B laser scanner and GenePix Pro Software (Molecular Devices, Sunnyvale, USA).

data_processing: The raw results were saved as GPR-files and processed and normalized using the BioConductor R packages limma and marray (http://www.bioconductor.org). For further analysis, loess-normalized data were saved in the in-house DNA microarray database (Polen et al. 2004) including detailed information about each experiment following MIAME standards (Brazma et al. 2009). Normalized ratios of medians reflecting the relative mRNA level were filtered for a signal-to-noise ratio ((F635Median/B635Median) or (F532Median/B532Median)) higher than 3. Statistical analysis for calculation of p-values was performed with a paired Student´s t-test comparing relative RNA levels for a gene to the relative RNA levels of all other genes in the replicates.

molecule: total RNA

organism: Corynebacterium glutamicum

source_name: wild type

label_protocol: Equal amounts of RNA (15-30 µg) were used for random hexamer primed synthesis of fluorescently labelled cDNA using the nucleotide analogous Cy3-dUTP or Cy5-dUTP (GE Healthcare, Eindhoven, Netherlands).

extract_protocol: Total RNA was isolated using the RNeasy Kit (Qiagen, Hilden, Germany) or as described by Wendisch et al. 2001.

tag: condition

value: WT harvested during exponential growth phase 3 h after addition of NaCl, CGXII glucose, date of experiment:2001-12/2002-11

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2001-12/2002-11


title: Histone ChIP-seq from heart right ventricle (ENCLB462SOO)

description:
https://www.encodeproject.org/experiments/ENCSR175ABH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR175ABH
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR597PTH
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB462SOO
size range: 200-600

source_name: Homo sapiens male adult (55 years) heart right ventricle tissue

tag: antibody

value: heart right ventricle

value: tissue

value: 55 year

tag: health state

value: ischemic (EF 25% LVEDD 6.9; RV normal size, moderate dysfunction)

value: Shin Lin

value: ENCBS377GPP at ENCODE; https://www.encodeproject.org/ENCBS377GPP/

value: Derived from ENCODE donor ENCDO439CAZ; https://www.encodeproject.org/ENCDO439CAZ/


title: Mint-ChIP-seq from Caco-2 (ENCLB127KXY)

description:
https://www.encodeproject.org/experiments/ENCSR995MHN/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR995MHN
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR662AMW
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB127KXY

source_name: Homo sapiens Caco-2 cell line

tag: line

value: cell line

value: 72 year

value: colorectal adenocarcinoma

value: Mats Ljungman

value: ENCBS257JWV at ENCODE; https://www.encodeproject.org/ENCBS257JWV/

value: Derived from ENCODE donor ENCDO000ACR; https://www.encodeproject.org/ENCDO000ACR/


title: Control Mint-ChIP-seq from CD14-positive monocyte (ENCLB478NAQ)

description:
https://www.encodeproject.org/experiments/ENCSR173UJQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR173UJQ
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB478NAQ

source_name: Homo sapiens male adult (51 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: 51 year

value: male

value: adult

value: Bradley Bernstein, Broad

value: Charles Lee

value: ENCBS409NZS at ENCODE; https://www.encodeproject.org/ENCBS409NZS/

value: Derived from ENCODE donor ENCDO346BRO; https://www.encodeproject.org/ENCDO346BRO/


title: WT (w/o KH2PO4, w/o K2HPO4, 13.08 mM glucose-6-phosphate) vs. WT-rep2

description: Biological replicate 2 of 2

value: WT harvested during exponential growth phase, CGXII glucose w/o KH2PO4, w/o K2HPO4, 13.08 mM glucose-6-phosphate, date of experiment:2002-04

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2002-04


title: Control Mint-ChIP-seq from activated T-cell (ENCLB476KJJ)

description:
https://www.encodeproject.org/experiments/ENCSR798SDW/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR798SDW
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-04-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB476KJJ

source_name: Homo sapiens female adult (21 years) activated T-cell primary cell treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours

value: activated T-cell

value: 21 year

value: female

value: John Stamatoyannopoulos

tag: treatments

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:72; duration_units:hour; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:72; duration_units:hour;

value: ENCBS649QNF at ENCODE; https://www.encodeproject.org/ENCBS649QNF/

value: Derived from ENCODE donor ENCDO282XZV; https://www.encodeproject.org/ENCDO282XZV/


title: Control Mint-ChIP-seq from CD14-positive monocyte (ENCLB796QGR)

description:
https://www.encodeproject.org/experiments/ENCSR173UJQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR173UJQ
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB796QGR

value: CD14-positive monocyte

value: primary cell


title: Mint-ChIP-seq from activated T-cell (ENCLB441UDK)

description:
https://www.encodeproject.org/experiments/ENCSR782NON/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR782NON
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR798SDW
encode release date: 2022-04-29
lab: Bradley Bernstein, Broad
library encode accession: ENCLB441UDK


title: Mint-ChIP-seq from activated T-cell (ENCLB698QMD)

description:
https://www.encodeproject.org/experiments/ENCSR782NON/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR782NON
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR798SDW
encode release date: 2022-04-29
lab: Bradley Bernstein, Broad
library encode accession: ENCLB698QMD


title: Mint-ChIP-seq from HCT116 (ENCLB669WPR)

description:
https://www.encodeproject.org/experiments/ENCSR392PXT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR392PXT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR853IEG
encode release date: 2022-06-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB669WPR

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens MED14

value: cell line

value: 48 year

value: male

value: colorectal carcinoma

value: Erez Aiden

value: ENCBS828BDT at ENCODE; https://www.encodeproject.org/ENCBS828BDT/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: WT (750 mM NaCl, harvest after 60 min) vs. WT-rep2

description: Biological replicate 2 of 3

value: WT harvested during exponential growth phase 1 h after addition of NaCl, CGXII glucose, date of experiment:2001-11/2002-11

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2001-11/2002-11


title: WT (750 mM NaCl, harvest after 120 min) vs. WT-rep2

description: Biological replicate 2 of 3

value: WT harvested during exponential growth phase 2 h after addition of NaCl, CGXII glucose, date of experiment:2001-12/2002-11

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2001-12/2002-11


title: Mint-ChIP-seq from HCT116 (ENCLB663ILL)

description:
https://www.encodeproject.org/experiments/ENCSR392PXT/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR392PXT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR853IEG
encode release date: 2022-06-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB663ILL

value: adult

value: Bradley Bernstein, Broad


title: WT (750 mM NaCl, harvest after 60 min) vs. WT-rep3

description: Biological replicate 3 of 3


title: WT (750 mM NaCl, harvest after 120 min) vs. WT-rep3

description: Biological replicate 3 of 3


title: TF ChIP-seq from placenta (ENCLB110YHH)

description:
https://www.encodeproject.org/experiments/ENCSR782BSY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR782BSY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR918ESG
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB110YHH
size range: 200-600

source_name: Homo sapiens male embryo placenta tissue

value: CTCF

value: placenta

value: tissue

value: unknown

value: embryonic

value: John Stamatoyannopoulos

value: ENCBS834VHU at ENCODE; https://www.encodeproject.org/ENCBS834VHU/

value: Derived from ENCODE donor ENCDO225QCT; https://www.encodeproject.org/ENCDO225QCT/


title: WT (750 mM NaCl, harvest after 30 min) vs. WT-rep2

description: Biological replicate 2 of 3

value: WT harvested during exponential growth phase 30 min after addition of NaCl, CGXII glucose, date of experiment:2002-04

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2002-04


title: WT (750 mM NaCl, harvest after 30 min) vs. WT-rep3

description: Biological replicate 3 of 3


title: WT (750 mM NaCl, harvest after 60 min) vs. WT-rep1

description: Biological replicate 1 of 3


title: TF ChIP-seq from placenta (ENCLB943DVO)

description:
https://www.encodeproject.org/experiments/ENCSR782BSY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR782BSY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR918ESG
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB943DVO
size range: 200-600

value: male


title: Control ChIP-seq from middle frontal area 46 (ENCLB116FUW)

description:
https://www.encodeproject.org/experiments/ENCSR993YSN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR993YSN
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-06-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB116FUW
size range: 200-600

source_name: Homo sapiens female adult (89 years) with Alzheimer's disease; middle frontal area 46 tissue

value: middle frontal area 46

value: 89 year

value: female

value: Rush University

value: ENCBS748EGF at ENCODE; https://www.encodeproject.org/ENCBS748EGF/

value: Derived from ENCODE donor ENCDO843TIL; https://www.encodeproject.org/ENCDO843TIL/


title: WT (750 mM NaCl, harvest after 120 min) vs. WT-rep1

description: Biological replicate 1 of 3

value: WT harvested during exponential growth phase 2 h after addition of NaCl, CGXII glucose, date of experiment:2001-12/2002-11

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2001-12/2002-11


title: WT (750 mM NaCl, harvest after 15 min) vs. WT-rep2

description: Biological replicate 2 of 3

value: WT harvested during exponential growth phase 15 min after addition of NaCl, CGXII glucose, date of experiment:2002-04/2002-11

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2002-04/2002-11


title: Control ChIP-seq from middle frontal area 46 (ENCLB086MKW)

description:
https://www.encodeproject.org/experiments/ENCSR993YSN/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR993YSN
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-06-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB086MKW
size range: 200-600

value: tissue

value: adult

value: Bradley Bernstein, Broad


title: WT (750 mM NaCl, harvest after 15 min) vs. WT-rep1

description: Biological replicate 1 of 3


title: Mint-ChIP-seq from HCT116 (ENCLB954VFO)

description:
https://www.encodeproject.org/experiments/ENCSR993EBE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR993EBE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR933ZIE
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB954VFO

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens POLR2A

value: cell line

value: 48 year

value: colorectal carcinoma

value: Erez Aiden

value: ENCBS169OGM at ENCODE; https://www.encodeproject.org/ENCBS169OGM/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: WT (750 mM NaCl, harvest after 15 min) vs. WT-rep3

description: Biological replicate 3 of 3


title: Histone ChIP-seq from middle frontal area 46 (ENCLB195QZK)

description:
https://www.encodeproject.org/experiments/ENCSR581KPP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on middle frontal area 46 tissue male adult (83 years)
experiment encode accession: ENCSR581KPP
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR772LYM
encode release date: 2022-01-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB195QZK
size range: 200-600

source_name: Homo sapiens male adult (83 years) middle frontal area 46 tissue

value: middle frontal area 46

value: 83 year

value: male

value: ENCBS485UEI at ENCODE; https://www.encodeproject.org/ENCBS485UEI/

value: Derived from ENCODE donor ENCDO736YJH; https://www.encodeproject.org/ENCDO736YJH/


title: Mint-ChIP-seq from HCT116 (ENCLB551UZV)

description:
https://www.encodeproject.org/experiments/ENCSR993EBE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR993EBE
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR933ZIE
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB551UZV


title: WT (750 mM NaCl, harvest after 5 min) vs. WT-rep1

description: Biological replicate 1 of 2

value: WT harvested during exponential growth phase 5 min after addition of NaCl, CGXII glucose, date of experiment:2002-04

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2002-04


title: Control ChIP-seq from middle frontal area 46 (ENCLB156MKQ)

description:
https://www.encodeproject.org/experiments/ENCSR576VXL/
***************
biological replicate number: 2
technical replicate number: 2
description: Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years).
experiment encode accession: ENCSR576VXL
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB156MKQ
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue

value: 90 or above year

value: female

value: Rush University

value: ENCBS630ZNN at ENCODE; https://www.encodeproject.org/ENCBS630ZNN/

value: Derived from ENCODE donor ENCDO218FFZ; https://www.encodeproject.org/ENCDO218FFZ/


title: WT (500 µg/mL ethambutol, harvest at OD 5) vs. WT-rep3

description: Biological replicate 3 of 3

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2009-01/2009-02/2009-03

value: WT harvested during late exponential growth phase, CGXII glucose, date of experiment:2009-01/2009-02/2009-03


title: Control ChIP-seq from middle frontal area 46 (ENCLB114HSE)

description:
https://www.encodeproject.org/experiments/ENCSR576VXL/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years).
experiment encode accession: ENCSR576VXL
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB114HSE
size range: 200-600

value: tissue

value: adult

value: Bradley Bernstein, Broad


title: WT (750 mM NaCl, harvest after 30 min) vs. WT-rep1

description: Biological replicate 1 of 3

value: WT harvested during exponential growth phase 30 min after addition of NaCl, CGXII glucose, date of experiment:2002-04


title: WT (500 µg/mL ethambutol, harvest at OD 5) vs. WT-rep1

description: Biological replicate 1 of 3


title: Control ChIP-seq from middle frontal area 46 (ENCLB623WKF)

description:
https://www.encodeproject.org/experiments/ENCSR576VXL/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years).
experiment encode accession: ENCSR576VXL
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB623WKF
size range: 200-600

value: middle frontal area 46

value: ENCBS227KZL at ENCODE; https://www.encodeproject.org/ENCBS227KZL/


title: WT (500 µg/mL ethambutol, harvest at 10 h) vs. WT-rep2

description: Biological replicate 2 of 2

value: WT harvested during exponential growth phase 10 h after addition of ethambutol, CGXII glucose, date of experiment:2003-05/2003-08

value: WT harvested during late exponential growth phase, CGXII glucose, date of experiment:2003-05/2003-08


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB157QTW)

description:
https://www.encodeproject.org/experiments/ENCSR168YYI/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR168YYI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR569JUB
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB157QTW

source_name: Homo sapiens male adult (36 years) naive thymus-derived CD8-positive, alpha-beta T primary cell

value: primary cell

value: 36 year

value: male

value: John Stamatoyannopoulos

value: ENCBS793QJH at ENCODE; https://www.encodeproject.org/ENCBS793QJH/

value: Derived from ENCODE donor ENCDO424UPQ; https://www.encodeproject.org/ENCDO424UPQ/


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB704BGW)

description:
https://www.encodeproject.org/experiments/ENCSR168YYI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR168YYI
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR569JUB
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB704BGW


title: WT (750 mM NaCl, harvest after 5 min) vs. WT-rep2

description: Biological replicate 2 of 2

value: WT harvested during exponential growth phase 5 min after addition of NaCl, CGXII glucose, date of experiment:2002-04

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2002-04


title: Histone ChIP-seq from right lobe of liver (ENCLB514UDP)

description:
https://www.encodeproject.org/experiments/ENCSR779ISJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR779ISJ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR886ATT
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB514UDP
size range: 200-600

source_name: Homo sapiens female adult (47 years) right lobe of liver tissue

value: right lobe of liver

value: 47 year

value: female

value: DM:no; HTN:yes; CAD:no

value: Shin Lin

value: ENCBS025MJZ at ENCODE; https://www.encodeproject.org/ENCBS025MJZ/

value: Derived from ENCODE donor ENCDO912EIY; https://www.encodeproject.org/ENCDO912EIY/


title: WT (500 µg/mL ethambutol, harvest at 10 h) vs. WT-rep1

description: Biological replicate 1 of 2

value: WT harvested during exponential growth phase 10 h after addition of ethambutol, CGXII glucose, date of experiment:2003-05/2003-08


title: Mint-ChIP-seq from HCT116 (ENCLB792ZFX)

description:
https://www.encodeproject.org/experiments/ENCSR391PCO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR391PCO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR642FUX
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB792ZFX

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens RAD21

value: cell line

value: 48 year

value: colorectal carcinoma

value: adult

value: Bradley Bernstein, Broad

value: Erez Aiden

value: ENCBS891BUF at ENCODE; https://www.encodeproject.org/ENCBS891BUF/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: WT (500 µg/mL ethambutol, harvest at 8 h) vs. WT-rep2

description: Biological replicate 2 of 2

value: WT harvested during exponential growth phase 8 h after addition of ethambutol, CGXII glucose, date of experiment:2003-05/2003-08

value: WT harvested during late exponential growth phase, CGXII glucose, date of experiment:2003-05/2003-08


title: Control Mint-ChIP-seq from stimulated activated naive B cell (ENCLB150LOZ)

description:
https://www.encodeproject.org/experiments/ENCSR390KLC/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR390KLC
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB150LOZ

source_name: Homo sapiens male adult (40 years) stimulated activated naive B primary cell treated with 1ug/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10ug/mL anti-IgM for 72 hours

value: stimulated activated naive B cell

value: primary cell

value: 40 year

value: male

value: John Stamatoyannopoulos

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:72; duration_units:hour; temperature:37; temperature_units:Celsius; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:72; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:72; duration_units:hour; temperature:37; temperature_units:Celsius;

value: ENCBS304VHM at ENCODE; https://www.encodeproject.org/ENCBS304VHM/

value: Derived from ENCODE donor ENCDO512FEI; https://www.encodeproject.org/ENCDO512FEI/


title: WT (500 µg/mL ethambutol, harvest at 6.5 h) vs. WT-rep6

description: Biological replicate 6 of 6

value: WT harvested during exponential growth phase 6.5 h after addition of ethambutol, CGXII glucose, date of experiment:2002-12/2003-01/2003-02

value: WT harvested during late exponential growth phase, CGXII glucose, date of experiment:2002-12/2003-01/2003-02


title: Mint-ChIP-seq from HCT116 (ENCLB824RWM)

description:
https://www.encodeproject.org/experiments/ENCSR391PCO/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR391PCO
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR642FUX
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB824RWM

value: cell line

value: 48 year

value: colorectal carcinoma

value: adult


title: Control Mint-ChIP-seq from stimulated activated naive B cell (ENCLB442GCX)

description:
https://www.encodeproject.org/experiments/ENCSR390KLC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR390KLC
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB442GCX

value: Bradley Bernstein, Broad


title: WT (500 µg/mL ethambutol, harvest at 6.5 h) vs. WT-rep4

description: Biological replicate 4 of 6


title: WT (500 µg/mL ethambutol, harvest at 6.5 h) vs. WT-rep5

description: Biological replicate 5 of 6


title: WT (500 µg/mL ethambutol, harvest at 6.5 h) vs. WT-rep3

description: Biological replicate 3 of 6


title: WT (500 µg/mL ethambutol, harvest at 6 h) vs. WT-rep2

description: Biological replicate 2 of 2

value: WT harvested during exponential growth phase 6 h after addition of ethambutol, CGXII glucose, date of experiment:2003-05/2003-08


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB494RVX)

description:
https://www.encodeproject.org/experiments/ENCSR993CTA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR993CTA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR963EAC
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB494RVX

source_name: Homo sapiens with multiple sclerosis; CD4-positive, CD25-positive, alpha-beta regulatory T primary cell, preserved by cryopreservation

tag: description

value: Treg CD3+ CD4+ CD8- CD25+ CD127-

value: not collected

value: multiple sclerosis

value: unknown

value: David Hafler

value: ENCBS781DHR at ENCODE; https://www.encodeproject.org/ENCBS781DHR/

value: Derived from ENCODE donor ENCDO157PKH; https://www.encodeproject.org/ENCDO157PKH/


title: WT (500 µg/mL ethambutol, harvest at 6.5 h) vs. WT-rep1

description: Biological replicate 1 of 6


title: Mint-ChIP-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB816KQB)

description:
https://www.encodeproject.org/experiments/ENCSR993CTA/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR993CTA
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR963EAC
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB816KQB

value: primary cell


title: WT (500 µg/mL ethambutol, harvest at OD 5) vs. WT-rep2

description: Biological replicate 2 of 3

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2009-01/2009-02/2009-03

value: WT harvested during late exponential growth phase, CGXII glucose, date of experiment:2009-01/2009-02/2009-03


title: WT (500 µg/mL ethambutol, harvest at 4 h) vs. WT-rep2

description: Biological replicate 2 of 2

value: WT harvested during exponential growth phase 4 h after addition of ethambutol, CGXII glucose, date of experiment:2003-05/2003-08

value: WT harvested during late exponential growth phase, CGXII glucose, date of experiment:2003-05/2003-08


title: Control ChIP-seq from middle frontal area 46 (ENCLB102IHF)

description:
https://www.encodeproject.org/experiments/ENCSR576VXL/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on middle frontal area 46 tissue female adult (90 or above years).
experiment encode accession: ENCSR576VXL
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB102IHF
size range: 200-600

value: middle frontal area 46

value: tissue

value: 90 or above year

value: female

value: Rush University

value: ENCBS227KZL at ENCODE; https://www.encodeproject.org/ENCBS227KZL/

value: Derived from ENCODE donor ENCDO218FFZ; https://www.encodeproject.org/ENCDO218FFZ/


title: Mint-ChIP-seq from naive B cell (ENCLB075YWF)

description:
https://www.encodeproject.org/experiments/ENCSR389NJT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR389NJT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR056PPJ
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB075YWF

source_name: Homo sapiens male adult (40 years) naive B primary cell

value: naive B cell

value: 40 year

value: male

value: adult

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: ENCBS857XIR at ENCODE; https://www.encodeproject.org/ENCBS857XIR/

value: Derived from ENCODE donor ENCDO512FEI; https://www.encodeproject.org/ENCDO512FEI/


title: Mint-ChIP-seq from naive B cell (ENCLB410QKN)

description:
https://www.encodeproject.org/experiments/ENCSR389NJT/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR389NJT
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR056PPJ
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB410QKN

value: primary cell


title: WT (500 µg/mL ethambutol, harvest at 2 h) vs. WT-rep1

description: Biological replicate 1 of 2

source_name: wild type

value: WT harvested during exponential growth phase 2 h after addition of ethambutol, CGXII glucose, date of experiment:2003-05/2003-06

value: WT harvested during late exponential growth phase, CGXII glucose, date of experiment:2003-05/2003-06


title: TF ChIP-seq from WTC11 (ENCLB194OLZ)

description:
https://www.encodeproject.org/experiments/ENCSR992XTY/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR992XTY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR463ZLQ
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB194OLZ
size range: 200-600

source_name: Homo sapiens WTC11 cell line

value: CTCF

value: cell line

value: 30 year

value: Yin Shen

tag: passage number

value: ENCBS532TBS at ENCODE; https://www.encodeproject.org/ENCBS532TBS/

value: Derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: TF ChIP-seq from upper lobe of right lung (ENCLB855SQL)

description:
https://www.encodeproject.org/experiments/ENCSR164ASX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR164ASX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR750BQT
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB855SQL
size range: 200-600

source_name: Homo sapiens male adult (60 years) upper lobe of right lung tissue

value: upper lobe of right lung

value: tissue

value: 60 year

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: Shin Lin

value: ENCBS339XRG at ENCODE; https://www.encodeproject.org/ENCBS339XRG/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: TF ChIP-seq from WTC11 (ENCLB748OQC)

description:
https://www.encodeproject.org/experiments/ENCSR992XTY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR992XTY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR463ZLQ
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB748OQC
size range: 200-600

value: male

value: adult

value: Bradley Bernstein, Broad

value: ENCBS869UGY at ENCODE; https://www.encodeproject.org/ENCBS869UGY/


title: WT (500 µg/mL ethambutol, harvest at 6 h) vs. WT-rep1

description: Biological replicate 1 of 2

value: WT harvested during exponential growth phase 6 h after addition of ethambutol, CGXII glucose, date of experiment:2003-05/2003-08

value: WT harvested during late exponential growth phase, CGXII glucose, date of experiment:2003-05/2003-08


title: WT (500 µg/mL ethambutol, harvest at 4 h) vs. WT-rep1

description: Biological replicate 1 of 2

value: WT harvested during exponential growth phase 4 h after addition of ethambutol, CGXII glucose, date of experiment:2003-05/2003-08


title: TF ChIP-seq from upper lobe of right lung (ENCLB458ESB)

description:
https://www.encodeproject.org/experiments/ENCSR164ASX/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR164ASX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR750BQT
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB458ESB
size range: 200-600

value: CTCF


title: WT (500 µg/mL ethambutol, harvest at 0 h) vs. WT-rep2

description: Biological replicate 2 of 2

value: WT harvested during exponential growth phase before additon of ethambutol, CGXII glucose, date of experiment:2003-05/2003-09

value: WT harvested during late exponential growth phase, CGXII glucose, date of experiment:2003-05/2003-09


title: WT (500 µg/mL ethambutol, harvest at 2 h) vs. WT-rep2

description: Biological replicate 2 of 2

value: WT harvested during exponential growth phase 2 h after addition of ethambutol, CGXII glucose, date of experiment:2003-05/2003-06

value: WT harvested during late exponential growth phase, CGXII glucose, date of experiment:2003-05/2003-06


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB790ZZX)

description:
https://www.encodeproject.org/experiments/ENCSR162RMW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR162RMW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR173UJQ
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB790ZZX

source_name: Homo sapiens male adult (51 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: 51 year

value: Charles Lee

value: ENCBS409NZS at ENCODE; https://www.encodeproject.org/ENCBS409NZS/

value: Derived from ENCODE donor ENCDO346BRO; https://www.encodeproject.org/ENCDO346BRO/


title: Mint-ChIP-seq from CD14-positive monocyte (ENCLB375TDQ)

description:
https://www.encodeproject.org/experiments/ENCSR162RMW/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR162RMW
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR173UJQ
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB375TDQ

value: male

value: adult


title: WT (500 µg/mL ethambutol, harvest at 6.5 h) vs. WT-rep2

description: Biological replicate 2 of 6

value: WT harvested during exponential growth phase 6.5 h after addition of ethambutol, CGXII glucose, date of experiment:2002-12/2003-01/2003-02

value: WT harvested during late exponential growth phase, CGXII glucose, date of experiment:2002-12/2003-01/2003-02


title: WT (2g/L Tween40, OD 12) vs. WT (OD 18)-rep2

description: Biological replicate 2 of 2

value: WT harvested during late exponential growth phase, CGXII Tween40, date of experiment:2003-04

value: WT harvested during late exponential growth phase, CGXII glucose, date of experiment:2003-04


title: WT (2g/L Tween40, OD 12) vs. WT (OD 18)-rep1

description: Biological replicate 1 of 2


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB667LEC)

description:
https://www.encodeproject.org/experiments/ENCSR388HWB/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR388HWB
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR569JUB
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB667LEC

value: 36 year

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: ENCBS793QJH at ENCODE; https://www.encodeproject.org/ENCBS793QJH/

value: Derived from ENCODE donor ENCDO424UPQ; https://www.encodeproject.org/ENCDO424UPQ/


title: WT (2g/L Tween40, OD 10) vs. WT (OD 13)-rep3

description: Biological replicate 3 of 4

value: WT harvested during late exponential growth phase, CGXII Tween40, date of experiment:2003-04/2003-05/2003-12

value: WT harvested during late exponential growth phase, CGXII glucose, date of experiment:2003-04/2003-05/2003-12


title: WT (2g/L Tween40, OD 10) vs. WT (OD 13)-rep4

description: Biological replicate 4 of 4


title: WT (1 µg/L biotin) vs. WT-rep4

description: Biological replicate 4 of 4

value: WT harvested during exponential growth phase, CGXII biotin, date of experiment:2004-12

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2004-12


title: WT (2g/L Tween40, OD 10) vs. WT (OD 13)-rep2

description: Biological replicate 2 of 4


title: TF ChIP-seq from WTC11 (ENCLB670INK)

description:
https://www.encodeproject.org/experiments/ENCSR992XTY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR992XTY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR463ZLQ
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB670INK
size range: 200-600

value: CTCF

value: cell line

value: 30 year

value: Yin Shen

value: ENCBS532TBS at ENCODE; https://www.encodeproject.org/ENCBS532TBS/

value: Derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: WT (2g/L Tween40, OD 10) vs. WT (OD 13)-rep1

description: Biological replicate 1 of 4


title: TF ChIP-seq from WTC11 (ENCLB373LXJ)

description:
https://www.encodeproject.org/experiments/ENCSR992XTY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR992XTY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR463ZLQ
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB373LXJ
size range: 200-600

value: male

value: adult

value: ENCBS869UGY at ENCODE; https://www.encodeproject.org/ENCBS869UGY/


title: WT (1 µg/L biotin) vs. WT-rep3

description: Biological replicate 3 of 4


title: WT (500 µg/mL ethambutol, harvest at 0 h) vs. WT-rep1

description: Biological replicate 1 of 2

value: WT harvested during exponential growth phase before additon of ethambutol, CGXII glucose, date of experiment:2003-05/2003-09

value: WT harvested during late exponential growth phase, CGXII glucose, date of experiment:2003-05/2003-09


title: TF ChIP-seq from CD14-positive monocyte (ENCLB154VZQ)

description:
https://www.encodeproject.org/experiments/ENCSR162KZY/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR162KZY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR660UYR
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB154VZQ
size range: 200-600

source_name: Homo sapiens male adult (30 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: Bradley Bernstein, Broad

value: Charles Lee

value: ENCBS640YHQ at ENCODE; https://www.encodeproject.org/ENCBS640YHQ/

value: Derived from ENCODE donor ENCDO544CHQ; https://www.encodeproject.org/ENCDO544CHQ/


title: Histone ChIP-seq from right lobe of liver (ENCLB720PYM)

description:
https://www.encodeproject.org/experiments/ENCSR779ISJ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR779ISJ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR886ATT
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB720PYM
size range: 200-600

value: right lobe of liver

value: tissue

value: 47 year

value: female

value: DM:no; HTN:yes; CAD:no

value: Shin Lin

value: ENCBS025MJZ at ENCODE; https://www.encodeproject.org/ENCBS025MJZ/

value: Derived from ENCODE donor ENCDO912EIY; https://www.encodeproject.org/ENCDO912EIY/


title: WT (1 µg/L biotin) vs. WT-rep2

description: Biological replicate 2 of 4

value: WT harvested during exponential growth phase, CGXII biotin, date of experiment:2004-12

value: WT harvested during exponential growth phase, CGXII glucose, date of experiment:2004-12


title: WT (1 µg/L biotin) vs. WT-rep1

description: Biological replicate 1 of 4


title: WT (750 U/L penicillin) vs. WT-rep2

description: Biological replicate 2 of 2

value: WT harvested during exponential growth phase, CGXII penicillin, date of experiment:2003-02/2003-04

value: WT harvested during exponential growth phase, CGXII, date of experiment:2003-02/2003-04


title: TF ChIP-seq from CD14-positive monocyte (ENCLB535CMU)

description:
https://www.encodeproject.org/experiments/ENCSR162KZY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR162KZY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR660UYR
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB535CMU
size range: 200-600

value: CTCF

value: CD14-positive monocyte

value: primary cell

value: 30 year

value: male

value: adult


title: Control Mint-ChIP-seq from naive B cell (ENCLB779QJM)

description:
https://www.encodeproject.org/experiments/ENCSR575ZCX/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR575ZCX
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB779QJM

source_name: Homo sapiens female adult (39 years) naive B primary cell

value: naive B cell

value: 39 year

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: ENCBS531INH at ENCODE; https://www.encodeproject.org/ENCBS531INH/

value: Derived from ENCODE donor ENCDO352FHC; https://www.encodeproject.org/ENCDO352FHC/


title: TF ChIP-seq from CD14-positive monocyte (ENCLB055BIF)

description:
https://www.encodeproject.org/experiments/ENCSR162KZY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR162KZY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR660UYR
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB055BIF
size range: 200-600

value: Charles Lee

value: ENCBS640YHQ at ENCODE; https://www.encodeproject.org/ENCBS640YHQ/

value: Derived from ENCODE donor ENCDO544CHQ; https://www.encodeproject.org/ENCDO544CHQ/


title: WT (1% ethanol) vs. WT (1% potassium acetate)-rep3

description: Biological replicate 3 of 3

value: WT harvest during exponential growth phase, CGXII ethanol, date of experiment:2002-07/2002-09/2002-10

value: WT harvest during exponential growth phase, CGXII potassium acetat, date of experiment:2002-07/2002-09/2002-10


title: WT (750 U/L penicillin) vs. WT-rep1

description: Biological replicate 1 of 2

value: WT harvested during exponential growth phase, CGXII penicillin, date of experiment:2003-02/2003-04

value: WT harvested during exponential growth phase, CGXII, date of experiment:2003-02/2003-04


title: Control Mint-ChIP-seq from natural killer cell (ENCLB413FUX)

description:
https://www.encodeproject.org/experiments/ENCSR387IEL/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR387IEL
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-04-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB413FUX

source_name: Homo sapiens male adult (47 years) natural killer primary cell treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 7...

value: natural killer cell

value: primary cell

value: 47 year

value: treatment_term_id:UniProtKB:Q14116; treatment_term_name:Interleukin-18; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P29460; treatment_term_name:Interleukin-12 subunit beta; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:72; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:72; duration_units:hour;

value: ENCBS177IBD at ENCODE; https://www.encodeproject.org/ENCBS177IBD/

value: Derived from ENCODE donor ENCDO311UBW; https://www.encodeproject.org/ENCDO311UBW/


title: Control Mint-ChIP-seq from natural killer cell (ENCLB613QKR)

description:
https://www.encodeproject.org/experiments/ENCSR387IEL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR387IEL
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-04-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB613QKR

value: male

value: adult

value: Bradley Bernstein, Broad


title: WT (500 µg/mL ethambutol, harvest at 8 h) vs. WT-rep1

description: Biological replicate 1 of 2

value: WT harvested during exponential growth phase 8 h after addition of ethambutol, CGXII glucose, date of experiment:2003-05/2003-08

value: WT harvested during late exponential growth phase, CGXII glucose, date of experiment:2003-05/2003-08


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB512EWD)

description:
https://www.encodeproject.org/experiments/ENCSR574IOP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR574IOP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR404OWA
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB512EWD

source_name: Homo sapiens male adult (38 years) naive thymus-derived CD4-positive, alpha-beta T primary cell

value: 38 year

value: John Stamatoyannopoulos

value: ENCBS995TBT at ENCODE; https://www.encodeproject.org/ENCBS995TBT/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: WT (1% ethanol) vs. WT (4% glucose)-rep3

description: Biological replicate 3 of 3

value: WT harvest during exponential growth phase, CGXII ethanol, date of experiment:2002-07

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2002-07


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB945YAK)

description:
https://www.encodeproject.org/experiments/ENCSR573OQH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR573OQH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR404OWA
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB945YAK


title: Control Mint-ChIP-seq from naive B cell (ENCLB090GSN)

description:
https://www.encodeproject.org/experiments/ENCSR575ZCX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR575ZCX
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB090GSN

value: naive B cell

value: 39 year

value: female

value: ENCBS531INH at ENCODE; https://www.encodeproject.org/ENCBS531INH/

value: Derived from ENCODE donor ENCDO352FHC; https://www.encodeproject.org/ENCDO352FHC/


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB677URG)

description:
https://www.encodeproject.org/experiments/ENCSR573OQH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR573OQH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR404OWA
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB677URG

value: primary cell


title: WT (1% ethanol) vs. WT (1% potassium acetate)-rep1

description: Biological replicate 1 of 3

value: WT harvest during exponential growth phase, CGXII ethanol, date of experiment:2002-07/2002-09/2002-10

value: WT harvest during exponential growth phase, CGXII potassium acetat, date of experiment:2002-07/2002-09/2002-10


title: Histone ChIP-seq from upper lobe of right lung (ENCLB297HZQ)

description:
https://www.encodeproject.org/experiments/ENCSR385YCN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR385YCN
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR750BQT
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB297HZQ
size range: 200-600

value: upper lobe of right lung

value: tissue

value: 60 year

value: male

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: adult

value: Bradley Bernstein, Broad

value: Shin Lin

value: ENCBS339XRG at ENCODE; https://www.encodeproject.org/ENCBS339XRG/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: WT (1% ethanol) vs. WT (1% potassium acetate)-rep2

description: Biological replicate 2 of 3


title: WT (1% ethanol) vs. WT (4% glucose)-rep1

description: Biological replicate 1 of 3

value: WT harvest during exponential growth phase, CGXII ethanol, date of experiment:2002-07

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2002-07


title: WT (1% ethanol) vs. WT (4% glucose)-rep2

description: Biological replicate 2 of 3


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB269ZGY)

description:
https://www.encodeproject.org/experiments/ENCSR574IOP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR574IOP
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR404OWA
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB269ZGY

value: 38 year

value: John Stamatoyannopoulos

value: ENCBS995TBT at ENCODE; https://www.encodeproject.org/ENCBS995TBT/

value: Derived from ENCODE donor ENCDO923WRX; https://www.encodeproject.org/ENCDO923WRX/


title: WT (100 mM valine) vs. WT-rep2

description: Biological replicate 2 of 3

value: WT harvest during exponential growth phase, CGXII valine, date of experiment:2001-04

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2001-04


title: Control ChIP-seq from middle frontal area 46 (ENCLB431UOD)

description:
https://www.encodeproject.org/experiments/ENCSR772LYM/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on middle frontal area 46 tissue male adult (83 years).
experiment encode accession: ENCSR772LYM
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB431UOD
size range: 200-600

value: middle frontal area 46

value: tissue

value: 83 year

value: Rush University

value: ENCBS485UEI at ENCODE; https://www.encodeproject.org/ENCBS485UEI/

value: Derived from ENCODE donor ENCDO736YJH; https://www.encodeproject.org/ENCDO736YJH/


title: Control ChIP-seq from middle frontal area 46 (ENCLB416BKH)

description:
https://www.encodeproject.org/experiments/ENCSR772LYM/
***************
biological replicate number: 1
technical replicate number: 2
description: Control ChIP-seq on middle frontal area 46 tissue male adult (83 years).
experiment encode accession: ENCSR772LYM
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2021-09-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB416BKH
size range: 200-600

value: male

value: adult

value: Bradley Bernstein, Broad


title: Mint-ChIP-seq from activated T-helper 17 cell (ENCLB799TXS)

description:
https://www.encodeproject.org/experiments/ENCSR385UWM/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR385UWM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR122NDV
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB799TXS

source_name: Homo sapiens male adult (50 years) activated T-helper 17 primary cell treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours

value: activated T-helper 17 cell

value: primary cell

value: 50 year

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:72; duration_units:hour; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:72; duration_units:hour;

value: ENCBS307XMP at ENCODE; https://www.encodeproject.org/ENCBS307XMP/

value: Derived from ENCODE donor ENCDO641WTL; https://www.encodeproject.org/ENCDO641WTL/


title: WT (100 mM leucine) vs. WT-rep5

description: Biological replicate 5 of 5

value: WT harvest during exponential growth phase, CGXII leucine, date of experiment:2001-08/2001-09

value: WT harvest during early exponential growth phase, CGXII glucose, date of experiment:2001-08/2001-09


title: WT (100 mM valine) vs. WT-rep3

description: Biological replicate 3 of 3

value: WT harvest during exponential growth phase, CGXII valine, date of experiment:2001-04

value: WT harvest during exponential growth phase, CGXII glucose, date of experiment:2001-04


title: Histone ChIP-seq from upper lobe of right lung (ENCLB006QSN)

description:
https://www.encodeproject.org/experiments/ENCSR385YCN/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR385YCN
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR750BQT
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB006QSN
size range: 200-600

value: upper lobe of right lung

value: tissue

value: 60 year

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: Shin Lin

value: ENCBS339XRG at ENCODE; https://www.encodeproject.org/ENCBS339XRG/

value: Derived from ENCODE donor ENCDO520EJG; https://www.encodeproject.org/ENCDO520EJG/


title: WT (100 mM valine) vs. WT-rep1

description: Biological replicate 1 of 3


title: WT (100 mM leucine) vs. WT-rep3

description: Biological replicate 3 of 5


title: Control Mint-ChIP-seq from dendritic cell (ENCLB545MFH)

description:
https://www.encodeproject.org/experiments/ENCSR992JBX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR992JBX
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB545MFH

source_name: Homo sapiens male adult (51 years) dendritic primary cell

value: dendritic cell

value: 51 year

value: male

value: adult

value: Bradley Bernstein, Broad

value: Charles Lee

value: ENCBS682CBV at ENCODE; https://www.encodeproject.org/ENCBS682CBV/

value: Derived from ENCODE donor ENCDO346BRO; https://www.encodeproject.org/ENCDO346BRO/


title: Control Mint-ChIP-seq from dendritic cell (ENCLB684TWK)

description:
https://www.encodeproject.org/experiments/ENCSR992JBX/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR992JBX
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB684TWK

value: primary cell


title: Mint-ChIP-seq from HCT116 (ENCLB874TAL)

description:
https://www.encodeproject.org/experiments/ENCSR991JSQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR991JSQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR861TAI
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB874TAL

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens SUPT16H treated with 1uM 5-Phenyl-1H-indole-3-acetic acid for 6 hours

value: cell line

value: 48 year

value: colorectal carcinoma

value: Erez Aiden

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS456IZA at ENCODE; https://www.encodeproject.org/ENCBS456IZA/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: WT (100 mM leucine) vs. WT-rep1

description: Biological replicate 1 of 5

value: WT harvest during exponential growth phase, CGXII leucine, date of experiment:2001-08/2001-09

value: WT harvest during early exponential growth phase, CGXII glucose, date of experiment:2001-08/2001-09


title: WT (100 mM leucine) vs. WT-rep4

description: Biological replicate 4 of 5


title: TF ChIP-seq from colonic mucosa (ENCLB326XAS)

description:
https://www.encodeproject.org/experiments/ENCSR380WJL/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on colonic mucosa tissue female adult (41 years)
experiment encode accession: ENCSR380WJL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR557RJE
encode release date: 2022-02-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB326XAS
size range: 200-600

source_name: Homo sapiens female adult (41 years) colonic mucosa tissue

value: CTCF

value: colonic mucosa

value: tissue

value: female

value: 41 year

value: Shin Lin

value: DM:no; HTN:no; CAD:no

value: ENCBS312CUX at ENCODE; https://www.encodeproject.org/ENCBS312CUX/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: Mint-ChIP-seq from activated T-helper 17 cell (ENCLB513UPC)

description:
https://www.encodeproject.org/experiments/ENCSR573MYS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR573MYS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR122NDV
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB513UPC

value: activated T-helper 17 cell

value: primary cell

value: 50 year

value: male

value: adult

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:72; duration_units:hour; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:72; duration_units:hour;

value: ENCBS307XMP at ENCODE; https://www.encodeproject.org/ENCBS307XMP/

value: Derived from ENCODE donor ENCDO641WTL; https://www.encodeproject.org/ENCDO641WTL/


title: WT (100 mM isoleucine) vs. WT-rep9

description: Biological replicate 9 of 9

value: WT harvest during exponential growth phase, CGXII isoleucine, date of experiment:2001-05/2001-06/2001-07

value: WT harvest during early exponential growth phase, CGXII glucose, date of experiment:2001-05/2001-06/2001-07


title: TF ChIP-seq from colonic mucosa (ENCLB063FXY)

description:
https://www.encodeproject.org/experiments/ENCSR380WJL/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on colonic mucosa tissue female adult (41 years)
experiment encode accession: ENCSR380WJL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR557RJE
encode release date: 2022-02-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB063FXY
size range: 200-600

value: CTCF

value: colonic mucosa

value: tissue

value: female

value: 41 year


title: Mint-ChIP-seq from activated T-helper 17 cell (ENCLB626FUU)

description:
https://www.encodeproject.org/experiments/ENCSR573MYS/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR573MYS
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR122NDV
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB626FUU

value: activated T-helper 17 cell


title: WT (100 mM isoleucine) vs. WT-rep8

description: Biological replicate 8 of 9


title: WT (100 mM isoleucine) vs. WT-rep7

description: Biological replicate 7 of 9


title: WT (100 mM isoleucine) vs. WT-rep6

description: Biological replicate 6 of 9


title: WT (100 mM isoleucine) vs. WT-rep5

description: Biological replicate 5 of 9


title: Mint-ChIP-seq from stimulated activated naive B cell (ENCLB198ILJ)

description:
https://www.encodeproject.org/experiments/ENCSR380BRV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR380BRV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR546DAT
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB198ILJ

source_name: Homo sapiens female adult (39 years) stimulated activated naive B primary cell treated with 1ug/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10ug/mL anti-IgM for 72 hours

value: stimulated activated naive B cell

value: primary cell

value: 39 year

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:72; duration_units:hour; temperature:37; temperature_units:Celsius; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:72; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:72; duration_units:hour; temperature:37; temperature_units:Celsius;

value: ENCBS218KXX at ENCODE; https://www.encodeproject.org/ENCBS218KXX/

value: Derived from ENCODE donor ENCDO352FHC; https://www.encodeproject.org/ENCDO352FHC/


title: Mint-ChIP-seq from stimulated activated naive B cell (ENCLB341FGA)

description:
https://www.encodeproject.org/experiments/ENCSR380BRV/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR380BRV
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR546DAT
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB341FGA

value: adult

value: Bradley Bernstein, Broad

value: John Stamatoyannopoulos


title: Mint-ChIP-seq from activated T-helper 17 cell (ENCLB311RCG)

description:
https://www.encodeproject.org/experiments/ENCSR385UWM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR385UWM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR122NDV
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB311RCG

value: 50 year

value: male

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:72; duration_units:hour; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:72; duration_units:hour;

value: ENCBS307XMP at ENCODE; https://www.encodeproject.org/ENCBS307XMP/

value: Derived from ENCODE donor ENCDO641WTL; https://www.encodeproject.org/ENCDO641WTL/


title: Mint-ChIP-seq from HCT116 (ENCLB651RLN)

description:
https://www.encodeproject.org/experiments/ENCSR991JSQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR991JSQ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR861TAI
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB651RLN

value: cell line

value: 48 year

value: colorectal carcinoma

value: Erez Aiden

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS456IZA at ENCODE; https://www.encodeproject.org/ENCBS456IZA/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: WT (100 mM isoleucine) vs. WT-rep4

description: Biological replicate 4 of 9

value: WT harvest during exponential growth phase, CGXII isoleucine, date of experiment:2001-05/2001-06/2001-07

value: WT harvest during early exponential growth phase, CGXII glucose, date of experiment:2001-05/2001-06/2001-07


title: Mint-ChIP-seq from activated T-helper 17 cell (ENCLB975ERD)

description:
https://www.encodeproject.org/experiments/ENCSR989FGD/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR989FGD
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR122NDV
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB975ERD

value: activated T-helper 17 cell

value: primary cell

value: adult


title: WT (100 mM isoleucine) vs. WT-rep2

description: Biological replicate 2 of 9


title: Control ChIP-seq from middle frontal area 46 (ENCLB188SSW)

description:
https://www.encodeproject.org/experiments/ENCSR572GRM/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR572GRM
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-06-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB188SSW
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) with Alzheimer's disease; middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: 90 or above year

value: female

value: Bradley Bernstein, Broad

value: Rush University

value: ENCBS454HCI at ENCODE; https://www.encodeproject.org/ENCBS454HCI/

value: Derived from ENCODE donor ENCDO470GFA; https://www.encodeproject.org/ENCDO470GFA/


title: WT (100 mM leucine) vs. WT-rep2

description: Biological replicate 2 of 5

value: WT harvest during exponential growth phase, CGXII leucine, date of experiment:2001-08/2001-09

value: WT harvest during early exponential growth phase, CGXII glucose, date of experiment:2001-08/2001-09


title: WT (100 mM isoleucine) vs. WT-rep3

description: Biological replicate 3 of 9


title: WT (100 mM isoleucine) vs. WT-rep1

description: Biological replicate 1 of 9


title: Mint-ChIP-seq from activated T-helper 17 cell (ENCLB999JUB)

description:
https://www.encodeproject.org/experiments/ENCSR989FGD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR989FGD
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR122NDV
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB999JUB

value: 50 year

value: male

value: John Stamatoyannopoulos

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:72; duration_units:hour; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:72; duration_units:hour;

value: ENCBS307XMP at ENCODE; https://www.encodeproject.org/ENCBS307XMP/

value: Derived from ENCODE donor ENCDO641WTL; https://www.encodeproject.org/ENCDO641WTL/


title: Control ChIP-seq from middle frontal area 46 (ENCLB009NVX)

description:
https://www.encodeproject.org/experiments/ENCSR572GRM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR572GRM
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-06-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB009NVX
size range: 200-600

value: adult


title: WT (100 mM glucose, 100 mM glutamate) vs. WT (100 mM glucose)-rep4

description: Biological replicate 4 of 4

value: WT harvest during exponential growth phase, CGXII glucose, glutamate, date of experiment:2003-10

value: WT harvest during exponential growth phase, OD 5, CGXII glucose, date of experiment:2003-10


title: WT (100 mM glucose, 100 mM glutamate) vs. WT (100 mM glucose)-rep3

description: Biological replicate 3 of 4


title: Control ChIP-seq from middle frontal area 46 (ENCLB953QYD)

description:
https://www.encodeproject.org/experiments/ENCSR572GRM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR572GRM
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-06-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB953QYD
size range: 200-600

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: 90 or above year

value: ENCBS965OCN at ENCODE; https://www.encodeproject.org/ENCBS965OCN/


title: Control ChIP-seq from middle frontal area 46 (ENCLB636EZP)

description:
https://www.encodeproject.org/experiments/ENCSR572GRM/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR572GRM
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-06-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB636EZP
size range: 200-600

value: female

value: Bradley Bernstein, Broad

value: Rush University


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB867PZH)

description:
https://www.encodeproject.org/experiments/ENCSR571YYX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR571YYX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR569JUB
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB867PZH

source_name: Homo sapiens male adult (36 years) naive thymus-derived CD8-positive, alpha-beta T primary cell

value: primary cell

value: 36 year

value: ENCBS793QJH at ENCODE; https://www.encodeproject.org/ENCBS793QJH/

value: Derived from ENCODE donor ENCDO424UPQ; https://www.encodeproject.org/ENCDO424UPQ/


title: WT (100 mM glucose, 100 mM glutamate) vs. WT (100 mM glucose)-rep2

description: Biological replicate 2 of 4


title: WT (100 mM glucose, 100 mM glutamate) vs. WT (100 mM glucose)-rep1

description: Biological replicate 1 of 4


title: WT (LB, 50 mM sucrose) vs. WT (LB, 100 mM glucose)-rep5

description: Biological replicate 5 of 5

value: WT harvested during exponential growth phase, LB sucrose, date of experiment:2003-07/2003-08/2003-09

value: WT harvested during exponential growth phase, OD 5, LB glucose, date of experiment:2003-07/2003-08/2003-09


title: WT (LB, 50 mM sucrose) vs. WT (LB, 100 mM glucose)-rep4

description: Biological replicate 4 of 5


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB584KHP)

description:
https://www.encodeproject.org/experiments/ENCSR571YYX/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR571YYX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR569JUB
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB584KHP

value: male

value: John Stamatoyannopoulos


title: Mint-ChIP-seq from Caco-2 (ENCLB693XIF)

description:
https://www.encodeproject.org/experiments/ENCSR571QQB/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR571QQB
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR662AMW
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB693XIF

source_name: Homo sapiens Caco-2 cell line

value: cell line

value: 72 year

value: colorectal adenocarcinoma

value: adult

value: Mats Ljungman

value: ENCBS257JWV at ENCODE; https://www.encodeproject.org/ENCBS257JWV/

value: Derived from ENCODE donor ENCDO000ACR; https://www.encodeproject.org/ENCDO000ACR/


title: Mint-ChIP-seq from Caco-2 (ENCLB301BLO)

description:
https://www.encodeproject.org/experiments/ENCSR571QQB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR571QQB
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR662AMW
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB301BLO

value: Bradley Bernstein, Broad


title: Histone ChIP-seq from middle frontal area 46 (ENCLB845SRF)

description:
https://www.encodeproject.org/experiments/ENCSR987FAM/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27ac ChIP-seq on middle frontal area 46 tissue female adult (82 years)
experiment encode accession: ENCSR987FAM
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR405BDN
encode release date: 2022-01-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB845SRF
size range: 200-600

source_name: Homo sapiens female adult (82 years) middle frontal area 46 tissue

value: middle frontal area 46

value: tissue

value: 82 year

value: female

value: Rush University

value: ENCBS712RMD at ENCODE; https://www.encodeproject.org/ENCBS712RMD/

value: Derived from ENCODE donor ENCDO290OPS; https://www.encodeproject.org/ENCDO290OPS/


title: WT (LB, 50 mM sucrose) vs. WT (LB, 100 mM glucose)-rep3

description: Biological replicate 3 of 5

source_name: wild type

value: WT harvested during exponential growth phase, LB sucrose, date of experiment:2003-07/2003-08/2003-09

value: WT harvested during exponential growth phase, OD 5, LB glucose, date of experiment:2003-07/2003-08/2003-09


title: Histone ChIP-seq from middle frontal area 46 (ENCLB273TLC)

description:
https://www.encodeproject.org/experiments/ENCSR987FAM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on middle frontal area 46 tissue female adult (82 years)
experiment encode accession: ENCSR987FAM
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR405BDN
encode release date: 2022-01-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB273TLC
size range: 200-600


title: TF ChIP-seq from psoas muscle (ENCLB940IPT)

description:
https://www.encodeproject.org/experiments/ENCSR984IUE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR984IUE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR456AMX
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB940IPT
size range: 200-600

source_name: Homo sapiens female adult (41 years) psoas muscle tissue

value: CTCF

value: psoas muscle

value: 41 year

value: DM:no; HTN:no; CAD:no

value: Shin Lin

value: ENCBS168AIQ at ENCODE; https://www.encodeproject.org/ENCBS168AIQ/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: WT (LB, 50 mM sucrose) vs. WT (LB, 100 mM glucose)-rep2

description: Biological replicate 2 of 5


title: WT (LB, 50 mM sucrose) vs. WT (LB, 100 mM glucose)-rep1

description: Biological replicate 1 of 5


title: TF ChIP-seq from psoas muscle (ENCLB803ZCP)

description:
https://www.encodeproject.org/experiments/ENCSR984IUE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR984IUE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR456AMX
encode release date: 2022-06-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB803ZCP
size range: 200-600

value: adult

value: Bradley Bernstein, Broad


title: WT (LB, 50 mM sucrose) vs. WT (LB)-rep3

description: Biological replicate 3 of 3

value: WT harvested during exponential growth phase, LB sucrose, date of experiment:2004-04

value: WT harvested during exponential growth phase, OD 5, LB, date of experiment:2004-04


title: WT (LB, 50 mM sucrose) vs. WT (LB)-rep1

description: Biological replicate 1 of 3


title: Mint-ChIP-seq from HCT116 (ENCLB480QFR)

description:
https://www.encodeproject.org/experiments/ENCSR766IIG/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR766IIG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR898CSY
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB480QFR

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens POLR2A treated with 1uM 5-Phenyl-1H-indole-3-acetic acid for 6 hours

value: cell line

value: 48 year

value: male

value: colorectal carcinoma

value: Erez Aiden

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS929EFP at ENCODE; https://www.encodeproject.org/ENCBS929EFP/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: Mint-ChIP-seq from HCT116 (ENCLB076OVP)

description:
https://www.encodeproject.org/experiments/ENCSR571CNF/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR571CNF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR704TRV
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB076OVP

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens CDK7

value: ENCBS982XND at ENCODE; https://www.encodeproject.org/ENCBS982XND/


title: Mint-ChIP-seq from HCT116 (ENCLB396UXG)

description:
https://www.encodeproject.org/experiments/ENCSR766IIG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR766IIG
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR898CSY
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB396UXG


title: WT (LB, 50 mM sucrose) vs. WT (LB)-rep2

description: Biological replicate 2 of 3


title: Mint-ChIP-seq from T-helper 17 cell (ENCLB640BNB)

description:
https://www.encodeproject.org/experiments/ENCSR982WMJ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR982WMJ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR104DYP
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB640BNB

source_name: Homo sapiens male adult (50 years) T-helper 17 primary cell

value: T-helper 17 cell

value: primary cell

value: 50 year

value: John Stamatoyannopoulos

value: ENCBS720LKW at ENCODE; https://www.encodeproject.org/ENCBS720LKW/

value: Derived from ENCODE donor ENCDO641WTL; https://www.encodeproject.org/ENCDO641WTL/


title: Mint-ChIP-seq from HCT116 (ENCLB775WRX)

description:
https://www.encodeproject.org/experiments/ENCSR571CNF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR571CNF
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR704TRV
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB775WRX

value: adult

value: Bradley Bernstein, Broad


title: WT (50 mM glucose, 50 mM fructose) vs. WT (100 mM glucose)-rep5

description: Biological replicate 5 of 5

value: WT harvested during exponential growth phase, CGXII glucose fructose, date of experiment:2003-07/2003-08/2003-09

value: WT harvested during exponential growth phase, OD 5, CGXII glucose, date of experiment:2003-07/2003-08/2003-09


title: WT (50 mM glucose, 50 mM fructose) vs. WT (100 mM glucose)-rep4

description: Biological replicate 4 of 5


title: Mint-ChIP-seq from T-helper 17 cell (ENCLB349JYK)

description:
https://www.encodeproject.org/experiments/ENCSR982WMJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR982WMJ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR104DYP
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB349JYK

value: male


title: WT (50 mM glucose, 50 mM fructose) vs. WT (100 mM glucose)-rep3

description: Biological replicate 3 of 5


title: WT (50 mM glucose, 50 mM fructose) vs. WT (100 mM glucose)-rep2

description: Biological replicate 2 of 5


title: Control Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB138ISW)

description:
https://www.encodeproject.org/experiments/ENCSR569JUB/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR569JUB
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB138ISW

value: 36 year

value: ENCBS793QJH at ENCODE; https://www.encodeproject.org/ENCBS793QJH/

value: Derived from ENCODE donor ENCDO424UPQ; https://www.encodeproject.org/ENCDO424UPQ/


title: WT (50 mM glucose, 50 mM fructose) vs. WT (100 mM glucose)-rep1

description: Biological replicate 1 of 5


title: WT (100 mM fructose) vs. WT (100 mM glucose)-rep4

description: Biological replicate 4 of 4

value: WT harvested during exponential growth phase, CGXII fructose, date of experiment:2003-07/2003-08/2003-09


title: Control Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB665HUH)

description:
https://www.encodeproject.org/experiments/ENCSR569JUB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR569JUB
assay title: Control Mint-ChIP-seq
assembly: GRCh38
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB665HUH


title: WT (100 mM fructose) vs. WT (100 mM glucose)-rep3

description: Biological replicate 3 of 4


title: Histone ChIP-seq from middle frontal area 46 (ENCLB453BDH)

description:
https://www.encodeproject.org/experiments/ENCSR567VAB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years)
experiment encode accession: ENCSR567VAB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR836KPL
encode release date: 2022-02-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB453BDH
size range: 200-600

value: middle frontal area 46

value: tissue

value: female

value: 90 or above year

value: Rush University

value: ENCBS464LBN at ENCODE; https://www.encodeproject.org/ENCBS464LBN/

value: Derived from ENCODE donor ENCDO006DAA; https://www.encodeproject.org/ENCDO006DAA/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB134HWY)

description:
https://www.encodeproject.org/experiments/ENCSR567VAB/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years)
experiment encode accession: ENCSR567VAB
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR836KPL
encode release date: 2022-02-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB134HWY
size range: 200-600


title: WT (100 mM fructose) vs. WT (100 mM glucose)-rep2

description: Biological replicate 2 of 4


title: Histone ChIP-seq from middle frontal area 46 (ENCLB022SIL)

description:
https://www.encodeproject.org/experiments/ENCSR981TFL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years)
experiment encode accession: ENCSR981TFL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR576VXL
encode release date: 2022-01-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB022SIL
size range: 200-600

value: ENCBS227KZL at ENCODE; https://www.encodeproject.org/ENCBS227KZL/

value: Derived from ENCODE donor ENCDO218FFZ; https://www.encodeproject.org/ENCDO218FFZ/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB840WDU)

description:
https://www.encodeproject.org/experiments/ENCSR981TFL/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years)
experiment encode accession: ENCSR981TFL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR576VXL
encode release date: 2022-01-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB840WDU
size range: 200-600

value: adult

value: Bradley Bernstein, Broad


title: WT (LB, 100 mM fructose) vs. WT (LB, 100 mM glucose)-rep2

description: Biological replicate 2 of 2

value: WT harvested during exponential growth phase, LB fructose, date of experiment:2004-07

value: WT harvested during exponential growth phase, OD 5, LB glucose, date of experiment:2004-07


title: Histone ChIP-seq from middle frontal area 46 (ENCLB211PZA)

description:
https://www.encodeproject.org/experiments/ENCSR981TFL/
***************
biological replicate number: 2
technical replicate number: 2
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years)
experiment encode accession: ENCSR981TFL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR576VXL
encode release date: 2022-01-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB211PZA
size range: 200-600

value: ENCBS630ZNN at ENCODE; https://www.encodeproject.org/ENCBS630ZNN/


title: WT (LB, 100 mM fructose) vs. WT (LB, 100 mM glucose)-rep1

description: Biological replicate 1 of 2


title: WT (LB, 100 mM fructose) vs. WT (LB)-rep3

description: Biological replicate 3 of 3

value: WT harvested during exponential growth phase, LB fructose, date of experiment:2004-03

value: WT harvested during exponential growth phase, OD 5, LB, date of experiment:2004-03


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB555YVU)

description:
https://www.encodeproject.org/experiments/ENCSR979YHL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR979YHL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR069ZFG
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB555YVU

source_name: Homo sapiens male adult (35 years) CD4-positive naive resting alpha-beta T primary cell

value: primary cell

value: male

value: 35 year

value: Yijun Ruan, JAX

value: AllCells

value: ENCBS417NZZ at ENCODE; https://www.encodeproject.org/ENCBS417NZZ/

value: Derived from ENCODE donor ENCDO374BBL; https://www.encodeproject.org/ENCDO374BBL/


title: Histone ChIP-seq from middle frontal area 46 (ENCLB713AMF)

description:
https://www.encodeproject.org/experiments/ENCSR981TFL/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on middle frontal area 46 tissue female adult (90 or above years)
experiment encode accession: ENCSR981TFL
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR576VXL
encode release date: 2022-01-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB713AMF
size range: 200-600

value: middle frontal area 46

value: tissue

value: 90 or above year

value: female

value: Rush University


title: WT (LB, 100 mM glucose) vs. WT (LB)-rep3

description: Biological replicate 3 of 3

value: WT harvested during exponential growth phase, LB glucose, date of experiment:2003-10/2003-12

value: WT harvested during exponential growth phase, OD 5, LB, date of experiment:2003-10/2003-12


title: WT (100 mM fructose) vs. WT (100 mM glucose)-rep1

description: Biological replicate 1 of 4

value: WT harvested during exponential growth phase, CGXII fructose, date of experiment:2003-07/2003-08/2003-09

value: WT harvested during exponential growth phase, OD 5, CGXII fructose, date of experiment:2003-07/2003-08/2003-09


title: Mint-ChIP-seq from naive thymus-derived CD4-positive, alpha-beta T cell (ENCLB677VSB)

description:
https://www.encodeproject.org/experiments/ENCSR979YHL/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR979YHL
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR069ZFG
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB677VSB

value: adult


title: WT (LB, 100 mM glucose) vs. WT (LB)-rep2

description: Biological replicate 2 of 3


title: Histone ChIP-seq from middle frontal area 46 (ENCLB666CDN)

description:
https://www.encodeproject.org/experiments/ENCSR762RMQ/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K27me3 ChIP-seq on middle frontal area 46 tissue female adult (82 years)
experiment encode accession: ENCSR762RMQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR405BDN
encode release date: 2022-02-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB666CDN
size range: 200-600

value: 82 year

value: Bradley Bernstein, Broad

value: ENCBS712RMD at ENCODE; https://www.encodeproject.org/ENCBS712RMD/

value: Derived from ENCODE donor ENCDO290OPS; https://www.encodeproject.org/ENCDO290OPS/


title: WT (LB, 100 mM fructose) vs. WT (LB)-rep1

description: Biological replicate 1 of 3

value: WT harvested during exponential growth phase, LB fructose, date of experiment:2004-03

value: WT harvested during exponential growth phase, OD 5, LB, date of experiment:2004-03


title: WT (LB, 100 mM glucose) vs. WT (LB)-rep1

description: Biological replicate 1 of 3


title: Histone ChIP-seq from middle frontal area 46 (ENCLB396XLY)

description:
https://www.encodeproject.org/experiments/ENCSR762RMQ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on middle frontal area 46 tissue female adult (82 years)
experiment encode accession: ENCSR762RMQ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR405BDN
encode release date: 2022-02-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB396XLY
size range: 200-600


title: Mint-ChIP-seq from stimulated activated memory B cell (ENCLB279MHT)

description:
https://www.encodeproject.org/experiments/ENCSR157WAJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR157WAJ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR655TYY
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB279MHT

source_name: Homo sapiens male adult (40 years) stimulated activated memory B primary cell treated with 1ug/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10ug/mL anti-IgM for 72 hours

value: stimulated activated memory B cell

value: primary cell

value: 40 year

value: male

value: John Stamatoyannopoulos

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:72; duration_units:hour; temperature:37; temperature_units:Celsius; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:72; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:72; duration_units:hour; temperature:37; temperature_units:Celsius;

value: ENCBS619HZC at ENCODE; https://www.encodeproject.org/ENCBS619HZC/

value: Derived from ENCODE donor ENCDO512FEI; https://www.encodeproject.org/ENCDO512FEI/


title: WT (4% myo-inositol) vs. WT (4% glucose)-rep3

description: Biological replicate 3 of 3

value: WT harvested during exponential growth phase, CGXII myo-insositol, date of experiment:2002-09/2002-10

value: WT harvested during exponential growth phase, OD 5, CGXII glucose, date of experiment:2002-09/2002-10


title: Mint-ChIP-seq from stimulated activated memory B cell (ENCLB880UJC)

description:
https://www.encodeproject.org/experiments/ENCSR157WAJ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR157WAJ
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR655TYY
encode release date: 2022-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB880UJC

value: adult


title: WT (4% myo-inositol) vs. WT (4% glucose)-rep2

description: Biological replicate 2 of 3


title: Mint-ChIP-seq from HCT116 (ENCLB590YRK)

description:
https://www.encodeproject.org/experiments/ENCSR977QGX/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR977QGX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR848XKY
encode release date: 2022-06-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB590YRK

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens SMARCA5

value: cell line

value: 48 year

value: colorectal carcinoma

value: Erez Aiden

value: ENCBS599GGB at ENCODE; https://www.encodeproject.org/ENCBS599GGB/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: WT (4% myo-inositol) vs. WT (4% glucose)-rep1

description: Biological replicate 1 of 3


title: Mint-ChIP-seq from HCT116 (ENCLB253TRF)

description:
https://www.encodeproject.org/experiments/ENCSR977QGX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR977QGX
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR848XKY
encode release date: 2022-06-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB253TRF

value: Bradley Bernstein, Broad


title: WT (LB, 50 mM maltose) vs. WT (LB)-rep2

description: Biological replicate 2 of 3

value: WT harvested during exponential growth phase, LB maltose, date of experiment:2004-09

value: WT harvested during exponential growth phase, OD 5, LB, date of experiment:2004-09


title: WT (LB, 100 mM fructose) vs. WT (LB)-rep2

description: Biological replicate 2 of 3

value: WT harvested during exponential growth phase, LB fructose, date of experiment:2004-03

value: WT harvested during exponential growth phase, OD 5, LB, date of experiment:2004-03


title: WT (LB, 50 mM maltose) vs. WT (LB)-rep3

description: Biological replicate 3 of 3


title: Mint-ChIP-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB484TUO)

description:
https://www.encodeproject.org/experiments/ENCSR976RUD/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR976RUD
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR239ZVK
encode release date: 2022-03-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB484TUO

source_name: Homo sapiens male adult (33 years) naive thymus-derived CD8-positive, alpha-beta T primary cell

value: primary cell

value: 33 year

value: male

value: John Stamatoyannopoulos

value: ENCBS538USD at ENCODE; https://www.encodeproject.org/ENCBS538USD/

value: Derived from ENCODE donor ENCDO830ROH; https://www.encodeproject.org/ENCDO830ROH/