title: E5_B008645_B008945


title: E1_B008647_B008702

status: Public on Aug 15 2022

type: SRA

city: San Francisco

first: Juliane

last: Winkler

address: 513 Parnassus Avenue

department: Department of Cell and Tissue Biology

country: USA

institute: University of California, San Francisco

library_source: transcriptomic single cell

data_processing:
Sequences from the NovaSeq or NextSeq were de-multiplexed using bcl2fastq v.2.19.0.316. Reads were aligned to the gencode V30 genome using STAR v.2.5.2b with parameters TK. Gene counts were produced using HTSEQ v.0.6.1p1 with default parameters, except ‘stranded’ was set to ‘false’, and ‘mode’ was set to ‘intersection-nonempty’.
Gene count tables were combined with the metadata variables using the Scanpy Python package version 1.8.1. We removed the genes that were not expressed in at least 5 cells. Cells with less than 5000 counts and 500 detected genes were removed. Additionally, we removed cells with more than 50% mitochondrial genes and 20% ERCC reads.  The data were then normalized using size factor normalization such that every cell has 10,000 counts and log-transformed. We selected the top 2000 genes with the highest standardized variance as the highly variable genes by using VST method from Seurat V3, which is also implemented in Scanpy. Cell-cycle regression was performed after calculating the score of S and G2M phases for each cell. The data was then scaled to a maximum value of 10. We then computed principal component (PC) analysis, neighborhood graph and clustered the data using Louvain and Leiden methods. The data was visualized using UMAP projection.
Assembly: genecode V30
Supplementary files format and content: csv
Supplementary files format and content: comma seperated values file for meta data, raw gene count matrix, and normalized and log-transformed gene count matrix

molecule: total RNA

organism: Homo sapiens

extract_protocol:
Live, LIN-/hDC298+ single breast primary tumor and metastatic cells from lung were sorted into 384 well plates followed by cDNA preparation using modified SmartSeq2.
SmartSeq2 for preparation of cDNA followed by library preparation using a homebrew adapted version.

tag: tissue

value: patient-derived-xenograft

tag: cell type

value: tumor

tag: strain

value: NSG


title: E19_B008647_B008702


title: MOLM13_JQ1_BRD4

city: La Jolla

first: Michael

last: Erb

state: CA

address: 10650 N Torrey Pines Rd

department: Department of Chemistry

institute: The Scripps Research Institute

library_source: genomic

data_processing:
Sequenced reads were aligned to hg19 and either mm9 or dm3 reference genomes with bowtie2 using default parameters except for 'k -1'.
Alignment files were sorted and indexed with Samtools -sort and -index.
Peaks were called using MACS (1.4.2) with p-val = 1e-9 cutoff used.
Bedgraphs were made from bams using Bedtools genomecov with -bg option.
Read density was calculated using Bamliquidator (v1.0, http://github.com/BradnerLab/pipeline/wiki/bamliquidator) and were normalized by dividing by the number of reads that aligned to the spike-in (mm9 or dm3) genome.
Assembly: hg19
Supplementary files format and content: bedgraph files and bed files of MACS peaks

molecule: genomic DNA

growth_protocol: MOLM-13 cells were cultured in RPMI supplemented with 10% FBS, penicillin, and streptomycin. HL-60 cells were cultured in RPMI supplemented with 10% FBS, penicillin, and streptomycin.

extract_protocol:
Fixed numbers of mouse or drosophila cells were spiked-in to treated cells. Cells were then lysed. Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody.
Libraries were prepared with Takara ThruPLEX® DNA-Seq Kit (Cat. No. R400674) according to manufacturer's instructions.

treatment_protocol: Cells were treated with 3 µM A-485 or DMSO for 2 hours.

tag: cell line

value: acute myeloid leukemia

tag: chip antibody

value: BRD4 (Bethyl Laboratories, # A301-985A100)


title: MOLM13_BRD4_Input


title: MOLM13_DMSO_BRD4


title: E20_B008647_B008702


title: MOLM13_A485_BRD4


title: E22_B008647_B008702


title: MOLM13_DMSO_ENL

value: ENL (Cell Signaling Technology, #14893)


title: MOLM13_A485_ENL


title: MOLM13_A485_RNAPol2

value: RNA Polymerase II (Diagenode, #C15100055)


title: MOLM13_ENL_Input


title: E21_B008647_B008702


title: E2_B008647_B008702


title: MOLM13_DMSO_RNAPol2


title: E3_B008647_B008702


title: E4_B008647_B008702


title: MOLM13_RNAPol2_Input


title: E5_B008647_B008702


title: K14_B008647_B008702


title: MOLM13_H3K27ac_Input


title: MOLM13_DMSO_H3K27ac

value: H3K27ac (Abcam, ab4729)


title: MOLM13_A485_H3K27ac


title: F3_B008645_B008945


title: K15_B008647_B008702


title: K17_B008647_B008702


title: MOLM13_A485_H3K18ac

value: H3K18ac (EMD Millipore, #07-354)


title: K19_B008647_B008702


title: MOLM13_SR0813_ENL


title: MOLM13_DMSO_H3K18ac


title: K1_B008647_B008702


title: K21_B008647_B008702


title: MOLM13_H3K18ac_Input


title: P. donghuensis P482, M9glc Tomato exudates_3

city: Gdansk

first: Dorota

middle: Magdalena

last: Krzyzanowska

state: Pomeranian

address: Abrahama 58

department: Intercollegiate Faculty of Biotechnology UG&MUG

country: Poland

institute: University of Gdansk

description: DGE_Tomato with Control as ref.txt

library_source: transcriptomic

data_processing:
Data processing up to differential gene analysis and functional annotation was performed at Baseclear B.V (The Netherlands), and the description is derived from the official Report by the company.
FASTQ read sequence files were generated using bcl2fastq2 version 2.18.
Initial quality assessment was based on data passing the Illumina Chastity filtering.
Rreads containing PhiX control signal were removed using an in-house filtering protocol.
Reads containing (partial) adapters were clipped (up to a minimum read length of 50 bp).
The second quality assessment was based on the remaining reads using the FASTQC quality control tool version 0.11.5.
For reference alignment, the reads were adapter trimmed and quality-checked using Trim_Galore version 0.6.2.
Next, RNA-seq reads were mapped to the reference genome reference using STAR aligner version 2.7.1 (Dobin et al 2013).
Assignment of mapped reads to genomic features (counting) was performed with featureCounts version 1.6.3.
The normalized counts per sample were calculated using the TPM method that takes into account the gene length and the sequencing library size.
Differential gene expression analysis was performed using DESeq2 version 1.22.2 (Love et al 2014).
Functional annotation was assigned to genes with the (eggNOG database) (version 5.0) using the eggNOG-mapper (version 2.0.0) to align the protein sequences to the eggnog protein database with default settings.
Assembly: JHTS00000000.1
Supplementary files format and content: Excel file includes DESeq2 output with differential gene expression (DGE), with eggNOG annotations; Control samples were used as a reference for the Tomato and Maize treatments.

organism: Pseudomonas donghuensis

growth_protocol: P482 cells from an overnight culture at 28C in M9 medium with 0.4% glucose (0.8 in McF) were used to inoculate (1:50) fresh medium, with the addition of root exudates (treatments) or without (control), and cultured in a 96-well format with continous monitoring of OD600 till reaching stationary phase.

extract_protocol:
RNA was isolated from cells fixed with fixRNA (Eurx) usingRNeasy Mini Kit (Qiagen). rRNA was depleted with MICROBExpress Bacterial mRNA Enrichment Kit (Thermo Fisher Scientific).
RNA libraries for RNA-seq were prepared using a Bacterial mRNA prep (according to Baseclear B.V., The Netherlands)

treatment_protocol: The applied treatments included the addition of freeze-dried root exudates of either tomato or maize (0.2 mg L-1), water-collected from plants grown in gnotobiotic conditions.

value: bacterial cells

tag: genotype

value: WT

tag: treatment

value: tomato exudates

tag: time

value: early stationary growth phase


title: P. donghuensis P482, M9glc Maize exudates_1

description: DGE_Maize with Control as ref.txt

value: maize exudates


title: K8_B008647_B008702


title: K4_B008647_B008702


title: P. donghuensis P482, M9glc Control_3


title: P. donghuensis P482, M9glc Tomato exudates_1

description: DGE_Tomato with Control as ref.txt


title: K5_B008647_B008702


title: P. donghuensis P482, M9glc Control_2


title: L11_B008647_B008702


title: K9_B008647_B008702


title: P. donghuensis P482, M9glc Control_1


title: L18_B008647_B008702


title: L21_B008647_B008702


title: P. donghuensis P482, M9glc Maize exudates_3

description: DGE_Maize with Control as ref.txt


title: K20_B008647_B008702


title: P. donghuensis P482, M9glc Maize exudates_2

description: DGE_Maize with Control as ref.txt


title: K2_B008647_B008702


title: N21_B008647_B008702


title: L8_B008647_B008702


title: P. donghuensis P482, M9glc Tomato exudates_2

description: DGE_Tomato with Control as ref.txt


title: L3_B008647_B008702


title: N3_B008647_B008702


title: N7_B008647_B008702


title: F5_B008645_B008945


title: N4_B008647_B008702


title: L20_B008647_B008702


title: N8_B008647_B008702


title: F7_B008645_B008945


title: 44hAPF ATAC Rep3

city: Ann Arbor

first: Elizabeth

last: Fogarty

state: MI

address: 1105 N. University Ave

institute: University of Michigan

data_processing:
Adaptors and low-quality bases trimmed with cutadapt version 1.18, -q 20, -m 25
Alignment to Wolbachia genome ASM802v1, --local --very-sensitive -X 1000
Alignment to Drosophila genome dm6, --local --very-sensitive -X 1000
PCR duplicates marked with Picard version 2.8.1 MarkDuplicates
Bam file generation, sub-nucleosomal fragments selected, downsampling, sorting, and indexing with samtools version 1.5
Bigwig file generation with Deeptools bamCoverage --binsize 10 --extendreads --normalizeUsing CPM --ignoreForNormalization chrM
Peaks called using macs2 verison 2.1.2 callpeak
Read coverage in peaks quantified by subread version 1.6.0 featurecounts
Assembly: dm6
Supplementary files format and content: BigWig

organism: Drosophila melanogaster

source_name: wing

growth_protocol: Animals were raised at 25°C on Bloomington Cornmeal media without malt extract

extract_protocol:
Dissect 10 larval wing discs or pupal wings per sample in Wash+ solution (20 mM HEPES, pH 7.5, 150 mM NaCl, 0.1% BSA, 0.5 mM Spermidine and Roche complete Protease Inhibitor Tablet: 1 tablet per 50 mL). Pipet 100ul of dissected tissues in Wash+ solution directly into 100µL 2X Collagenase/Dispase solution. Incubate at 23C for 30 minutes, shaking at 500 rpm. Vortex for 10 seconds at 60% max speed on a benchtop vortexer. Incubate another 10 minutes at 23C, shaking at 500 rpm. Vortex again for 10 seconds at 60% speed. From here, we use the Omni-ATAC Protocol (Corces et al., 2017). Spin down at 800 x g, 5 minutes, at 4C. Remove supernatant and wash in 200 µL 1X PBS. Repeat 4C spin and remove supernatant. Resuspend cell pellet in 50 µl cold ATAC-RSB (10mM Tris-HCl pH 7.4, 10 mM NaCl, 3mM MgCl2) supplemented with 0.1% NP40, 0.1% Tween-20, and 0.01% Digitonin. Pipette up and down 3 times. Incubate on ice 3 minutes. Add 1 mL cold ATAC-RSB containing 0.1% Tween-20 without NP40 or Digitonin. Invert tube 3 times. Spin down at 800 x g for 10 minutes, 4°C. Discard supernatant and resuspend nuclei in 50 µL transposition reaction mix: 25 µl 2x TDE1 Buffer, 3.5 µl Tn5 Enzyme, 16.5 µl PBS, 0.5 µL 1% Digitonin, 0.5 µL 10% Tween-20, 5 µL water. Incubate at 37°C for 30 minutes shaking at 1000 rpm.Purify using a Qiagen MinElute kit according to manufacturer’s protocol. Elute in 21 µl Elution Buffer (10 mM Tris buffer pH 8.0).
Library amplification was performed with NEBNext High-Fidelity 2X PCR Master Mix, according to cycling conditions described in Corces et al., 2017, and qPCR side reactions to optimize the number of PCR cycles for each sample. Libraries were assessed on an Agilent Bioanalyzer prior to sequencing

treatment_protocol: Larval samples were dissected from wandering larvae isolated from uncrowded vials. Vials with more than ~100 larvae were diluted into fresh vials to keep larvae uncrowded. Pupa were collected from vials at the White Pre-pupa stage (WPP) as described (Flegel et al., 2013), which was taken as 0h After Puparium Formation (APF) and reared on damp Kimwipes at 25°C to the indicated hours APF.

value: wing

value: y,w,hsflp/w ; + ; +

tag: Sex

value: female

value: 44 hours APF

value: Dissociated


title: 44hAPF ATAC Rep2


title: N9_B008647_B008702

value: patient-derived-xenograft

value: tumor

value: NSG


title: HSF1-siRNA 2#-3

type: RNA

city: Weifang City

first: Jiaqiu

last: Li

state: 省/直辖市

address: No. 2428, Yuhe Road, Kuiwen District

country: China

institute: weifang medical university

hyb_protocol: The labeled cRNAs were hybridized onto the Arraystar Human lncRNA Arrays (4x44K, Arraystar), and incubated for 17 hours at 65°C in an Agilent Hybridization Oven.

scan_protocol: After washing, slides were scanned with the Agilent Scanner G2505C.

data_processing: Data was extracted using Agilent Feature Extraction software.A series of data processing including quantile normalization were performed using the R software package. The lncRNAs that at least 7 out of 14 samples have flags in P or M (defined by GeneSpring software) were retained for further differential analyses. Differentially expressed lncRNAs with statistical significance between the two groups were identified through Volcano Plot filtering. The lncRNA/microRNA interaction was predicted with Arraystar's home-made miRNA target prediction software. All the differentially expressed lncRNAs were annotated  in detail with the lncRNA/miRNA interaction information. The lncRNA/microRNA interaction was predicted with Arraystar's home-made miRNA target prediction software. All the differentially expressed lncRNAs were annotated  in detail with the lncRNA/miRNA interaction information.

source_name: HCT116 cell

label_protocol: Total RNA from each sample was amplified and transcribed into fluorescent cRNA utilizing ramdom primer according to Arraystar Super RNA Labeling protocol (Arraystar, Inc.)

growth_protocol: HCT116 was cultured in McCOY’s 5A medium supplemented with 10% bovine serum at 37ºC with 5% CO2.

extract_protocol: After HSF1 knockdown, total RNA was isolated using Trizol reagent. Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: HCT116 cell was transfected with HSF1 specific small interfering RNA (siRNA) using Lipofectamine RNAiMax (Invitrogen).

tag: cell

tag: genotype/variation

value: HSF1-siRNA 2

tag: molecule subtype

value: lncRNA and mRNA


title: HSF1-siRNA 2#-2


title: 44hAPF ATAC Rep1


title: HSF1-siRNA 1#-1

value: HSF1-siRNA 1


title: 24hAPF ATAC Rep3

value: 24 hours APF


title: HSF1-siRNA 2#-1


title: O11_B008647_B008702


title: 24hAPF ATAC Rep2


title: NC-3

value: NC


title: O1_B008647_B008702


title: HSF1-siRNA 1#-2


title: HSF1-siRNA 1#-3


title: O3_B008647_B008702


title: O5_B008647_B008702


title: L3 ATAC Rep1

source_name: wing disc

value: wing disc


title: L3 ATAC Rep2


title: activated muscle stem cells, mfn2-/-, rep 3

city: Dallas

first: Prashant

last: Mishra

state: TX

address: 5323 Harry Hines Blvd

institute: University of Texas Southwestern Medical Center

data_processing:
Data was processed using the BICF RNASeq Analysis Workflow (ssh://git@git.biohpc.swmed.edu/BICF/Astrocyte/rnaseq.git) provided by the UTSouthwestern Bioinformatics Core Facility.
Reads were trimmed (trimgalore), and aligned to the reference genome using HiSAT2.
Readcounts were calculated using featureCounts.
Differential expression analysis was performed using DeSeq2.
Genome_build: mm9
Supplementary_files_format_and_content: Tab delimited text files including logCPM counts for each sample.

organism: Mus musculus

source_name: activated muscle stem cells

growth_protocol: Animals were maintained on standard chow diet, ad libitum, under a standard 12 hr light-dark cycle.

extract_protocol:
Skeletal muscle was dissected and digested with Collagenase II and Dispase at 37C for 30 minutes. Mononucleated cells were collected through a 70micron cell strainer. Activatd MuSCs were FACS purified as CD34-, Dendra2+, DAPI- populations. Total RNA was purified using the RNeasy Micro Kit (Qiagen #74004).
Libraries were constructed using the SMARTer stranded pico input total RNA-seq kit (Takara, #63411) following manufacturer instructions.

treatment_protocol: Tamoxifen (75mg/kg, once per day x 5 days) was adminstered by intraperitoneal injection to mice containing the mito-Dendra2 allele drived by a Pax7-Cre(ERT2) driver. Two days after the last tamoxifen dose, muscle injury was induced by BaCl2 administration (50 uL of 1.2% solution) into the tibialis anterior muscle. Two days after injury, activated muscle stem cells were isolated from tibailis anterior muscles.

value: Activated muscle stem cells, purified from injured mouse tibialis anterior muscle


title: activated muscle stem cells, mfn2-/-, rep 4


title: activated muscle stem cells, mfn2-/-, rep 2


title: 24hAPF ATAC Rep1


title: G13_B008645_B008945


title: O9_B008647_B008702


title: NC-1


title: activated muscle stem cells, wild-type, rep 4

value: wild-type


title: G16_B008645_B008945


title: activated muscle stem cells, mfn2-/-, rep 1


title: F9_B008645_B008945


title: activated muscle stem cells, wild-type, rep 3


title: A6_B008645_B008945


title: NC-2


title: activated muscle stem cells, wild-type, rep 2


title: G20_B008645_B008945


title: L9_B008645_B008945


title: G21_B008638_B010276


title: L5_B008645_B008945


title: activated muscle stem cells, wild-type, rep 1


city: Basel

first: Arne

last: Wehling

state: Basel-Stadt

address: Mattenstrasse 24

department: Department of Biosystems Science and Engineering

country: Switzerland

institute: ETH Zurich

description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120926_HG5YFBGXB_1_H9_Plate4_Seq5_CCTAAGAC_TTATGCGA_S360_R1_001_MM_1

data_processing:
Illumina RTA Version: 2.4.11 used for basecalling.
Sequenced reads were mapped to M21 musmusculus whole genome using star 2.5.3a with --quantMode GeneCounts.
The resulting sam files were converted into bam files with samtools. R
Raw counts were extracted from bam files using  subread version 1.5.0 featureCount with parameters:-t gene -g gene_id
M21 (ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M21)
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

molecule: polyA RNA

source_name: HSC daughter cell

extract_protocol:
Single HSC daughter cells were isolated with a micromanipulator and immediately placed into lysis buffer at 4 degree Celsius. Then Smart-Seq2 in adaption from https://www.nature.com/articles/s41467-018-05347-6
Nextera DNA Flex Library Prep
Nextera Illumina IDT

value: bone marrow

tag: age

value: 12 - 19 weeks

value: wild type


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120894_HG5YFBGXB_1_H5_Plate4_Seq5_TACGCTGC_TTATGCGA_S328_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120870_HG5YFBGXB_1_H2_Plate4_Seq5_GGAGCTAC_TTATGCGA_S304_R1_001_MM_1


title: L7_B008645_B008945


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120909_HG5YFBGXB_1_G7_Plate4_Seq5_TAGCGCTC_GAGCCTTA_S343_R1_001_MM_1


title: B13_B008645_B008945


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120885_HG5YFBGXB_1_G4_Plate4_Seq5_CGGAGCCT_GAGCCTTA_S319_R1_001_MM_1


title: M10_B008645_B008945


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120893_HG5YFBGXB_1_G5_Plate4_Seq5_TACGCTGC_GAGCCTTA_S327_R1_001_MM_1


title: M11_B008645_B008945


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120861_HG5YFBGXB_1_G1_Plate4_Seq5_ACTCGCTA_GAGCCTTA_S295_R1_001_MM_1


title: M14_B008645_B008945


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120877_HG5YFBGXB_1_G3_Plate4_Seq5_GCGTAGTA_GAGCCTTA_S311_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120924_HG5YFBGXB_1_F9_Plate4_Seq5_CCTAAGAC_AAGGCTAT_S358_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120869_HG5YFBGXB_1_G2_Plate4_Seq5_GGAGCTAC_GAGCCTTA_S303_R1_001_MM_1


title: M16_B008638_B010276


title: M15_B008645_B008945


title: G18_B008645_B008945


title: M19_B008638_B010276


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120900_HG5YFBGXB_1_F6_Plate4_Seq5_ATGCGCAG_AAGGCTAT_S334_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120908_HG5YFBGXB_1_F7_Plate4_Seq5_TAGCGCTC_AAGGCTAT_S342_R1_001_MM_1


title: M21_B008645_B008945


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120892_HG5YFBGXB_1_F5_Plate4_Seq5_TACGCTGC_AAGGCTAT_S326_R1_001_MM_1


title: M9_B008645_B008945


title: M2_B008638_B010276


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120884_HG5YFBGXB_1_F4_Plate4_Seq5_CGGAGCCT_AAGGCTAT_S318_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120860_HG5YFBGXB_1_F1_Plate4_Seq5_ACTCGCTA_AAGGCTAT_S294_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120876_HG5YFBGXB_1_F3_Plate4_Seq5_GCGTAGTA_AAGGCTAT_S310_R1_001_MM_1


title: N15_B008645_B008945


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120923_HG5YFBGXB_1_E9_Plate4_Seq5_CCTAAGAC_CTATTAAG_S357_R1_001_MM_1


title: B14_B008638_B010276


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120916_HG5YFBGXB_1_F8_Plate4_Seq5_ACTGAGCG_AAGGCTAT_S350_R1_001_MM_1


title: N10_B008645_B008945


title: N1_B008645_B008945


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120907_HG5YFBGXB_1_E7_Plate4_Seq5_TAGCGCTC_CTATTAAG_S341_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120915_HG5YFBGXB_1_E8_Plate4_Seq5_ACTGAGCG_CTATTAAG_S349_R1_001_MM_1


title: N21_B008645_B008945


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120891_HG5YFBGXB_1_E5_Plate4_Seq5_TACGCTGC_CTATTAAG_S325_R1_001_MM_1


title: N3_B008645_B008945


title: M1_B008638_B010276


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120883_HG5YFBGXB_1_E4_Plate4_Seq5_CGGAGCCT_CTATTAAG_S317_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120899_HG5YFBGXB_1_E6_Plate4_Seq5_ATGCGCAG_CTATTAAG_S333_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120867_HG5YFBGXB_1_E2_Plate4_Seq5_GGAGCTAC_CTATTAAG_S301_R1_001_MM_1


title: O10_B008645_B008945


title: N7_B008645_B008945


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120859_HG5YFBGXB_1_E1_Plate4_Seq5_ACTCGCTA_CTATTAAG_S293_R1_001_MM_1


title: O13_B008638_B010276


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120914_HG5YFBGXB_1_D8_Plate4_Seq5_ACTGAGCG_GCGTAAGA_S348_R1_001_MM_1


title: O12_B008645_B008945


title: B14_B008645_B008945


title: O14_B008638_B010276


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120898_HG5YFBGXB_1_D6_Plate4_Seq5_ATGCGCAG_GCGTAAGA_S332_R1_001_MM_1


title: O19_B008645_B008945


title: N17_B008645_B008945


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120882_HG5YFBGXB_1_D4_Plate4_Seq5_CGGAGCCT_GCGTAAGA_S316_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120858_HG5YFBGXB_1_D1_Plate4_Seq5_ACTCGCTA_GCGTAAGA_S292_R1_001_MM_1


title: O5_B008645_B008945


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120921_HG5YFBGXB_1_C9_Plate4_Seq5_CCTAAGAC_CCTAGAGT_S355_R1_001_MM_1


title: O6_B008645_B008945


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120897_HG5YFBGXB_1_C6_Plate4_Seq5_ATGCGCAG_CCTAGAGT_S331_R1_001_MM_1


title: P13_B008645_B008945


title: P15_B008645_B008945


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120866_HG5YFBGXB_1_D2_Plate4_Seq5_GGAGCTAC_GCGTAAGA_S300_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120889_HG5YFBGXB_1_C5_Plate4_Seq5_TACGCTGC_CCTAGAGT_S323_R1_001_MM_1


title: P1_B008645_B008945


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120913_HG5YFBGXB_1_C8_Plate4_Seq5_ACTGAGCG_CCTAGAGT_S347_R1_001_MM_1


title: O20_B008645_B008945


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120873_HG5YFBGXB_1_C3_Plate4_Seq5_GCGTAGTA_CCTAGAGT_S307_R1_001_MM_1


title: P2_B008645_B008945


title: B15_B008638_B010276


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120857_HG5YFBGXB_1_C1_Plate4_Seq5_ACTCGCTA_CCTAGAGT_S291_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120912_HG5YFBGXB_1_B8_Plate4_Seq5_ACTGAGCG_TTCTAGCT_S346_R1_001_MM_1


title: P3_B008645_B008945


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120888_HG5YFBGXB_1_B5_Plate4_Seq5_TACGCTGC_TTCTAGCT_S322_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120896_HG5YFBGXB_1_B6_Plate4_Seq5_ATGCGCAG_TTCTAGCT_S330_R1_001_MM_1


title: P4_B008645_B008945


title: A11_B008880_B106232_S11


title: D7_D088223_B106234_S79


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120880_HG5YFBGXB_1_B4_Plate4_Seq5_CGGAGCCT_TTCTAGCT_S314_R1_001_MM_1


title: D8_D088223_B106234_S80


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120864_HG5YFBGXB_1_B2_Plate4_Seq5_GGAGCTAC_TTCTAGCT_S298_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120872_HG5YFBGXB_1_B3_Plate4_Seq5_GCGTAGTA_TTCTAGCT_S306_R1_001_MM_1


title: P11_B008645_B008945


title: D9_D088223_B106234_S81


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120856_HG5YFBGXB_1_B1_Plate4_Seq5_ACTCGCTA_TTCTAGCT_S290_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120919_HG5YFBGXB_1_A9_Plate4_Seq5_CCTAAGAC_TCGACTAG_S353_R1_001_MM_1


title: E10_D088223_B106234_S106


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120881_HG5YFBGXB_1_C4_Plate4_Seq5_CGGAGCCT_CCTAGAGT_S315_R1_001_MM_1


title: E12_D088223_B106234_S108


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120911_HG5YFBGXB_1_A8_Plate4_Seq5_ACTGAGCG_TCGACTAG_S345_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120903_HG5YFBGXB_1_A7_Plate4_Seq5_TAGCGCTC_TCGACTAG_S337_R1_001_MM_1


title: E13_D088223_B106234_S109


title: E14_D088223_B106234_S110


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120895_HG5YFBGXB_1_A6_Plate4_Seq5_ATGCGCAG_TCGACTAG_S329_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120887_HG5YFBGXB_1_A5_Plate4_Seq5_TACGCTGC_TCGACTAG_S321_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120879_HG5YFBGXB_1_A4_Plate4_Seq5_CGGAGCCT_TCGACTAG_S313_R1_001_MM_1


title: E16_D088223_B106234_S112


title: E17_D088223_B106234_S113


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120871_HG5YFBGXB_1_A3_Plate4_Seq5_GCGTAGTA_TCGACTAG_S305_R1_001_MM_1


title: E19_D088223_B106234_S115


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120855_HG5YFBGXB_1_A1_Plate4_Seq5_ACTCGCTA_TCGACTAG_S289_R1_001_MM_1


title: E20_D088223_B106234_S116


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120765_HG5YFBGXB_1_G1_Plate3_Seq5_TAAGGCGA_GAGCCTTA_S199_R1_001_MM_1


title: E1_D088223_B106234_S97


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120780_HG5YFBGXB_1_F3_Plate3_Seq5_AGGCAGAA_AAGGCTAT_S214_R1_001_MM_1


title: E22_D088223_B106234_S118


title: E2_D088223_B106234_S98


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120764_HG5YFBGXB_1_F1_Plate3_Seq5_TAAGGCGA_AAGGCTAT_S198_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120772_HG5YFBGXB_1_F2_Plate3_Seq5_CGTACTAG_AAGGCTAT_S206_R1_001_MM_1


title: E5_D088223_B106234_S101


title: E3_D088223_B106234_S99


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120787_HG5YFBGXB_1_E4_Plate3_Seq5_TCCTGAGC_CTATTAAG_S221_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120779_HG5YFBGXB_1_E3_Plate3_Seq5_AGGCAGAA_CTATTAAG_S213_R1_001_MM_1


title: E6_D088223_B106234_S102


title: E7_D088223_B106234_S103


title: F10_D088223_B106234_S130


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120763_HG5YFBGXB_1_E1_Plate3_Seq5_TAAGGCGA_CTATTAAG_S197_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120771_HG5YFBGXB_1_E2_Plate3_Seq5_CGTACTAG_CTATTAAG_S205_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120786_HG5YFBGXB_1_D4_Plate3_Seq5_TCCTGAGC_GCGTAAGA_S220_R1_001_MM_1


title: C16_B008638_B010276


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120781_HG5YFBGXB_1_G3_Plate3_Seq5_AGGCAGAA_GAGCCTTA_S215_R1_001_MM_1


title: E9_D088223_B106234_S105


title: C1_B008638_B010276


title: F11_D088223_B106234_S131


title: F15_D088223_B106234_S135


title: F12_D088223_B106234_S132


title: F19_D088223_B106234_S139


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120762_HG5YFBGXB_1_D1_Plate3_Seq5_TAAGGCGA_GCGTAAGA_S196_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120793_HG5YFBGXB_1_C5_Plate3_Seq5_GGACTCCT_CCTAGAGT_S227_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120785_HG5YFBGXB_1_C4_Plate3_Seq5_TCCTGAGC_CCTAGAGT_S219_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120770_HG5YFBGXB_1_D2_Plate3_Seq5_CGTACTAG_GCGTAAGA_S204_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120777_HG5YFBGXB_1_C3_Plate3_Seq5_AGGCAGAA_CCTAGAGT_S211_R1_001_MM_1


title: F17_D088223_B106234_S137


title: F20_D088223_B106234_S140


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120769_HG5YFBGXB_1_C2_Plate3_Seq5_CGTACTAG_CCTAGAGT_S203_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120761_HG5YFBGXB_1_C1_Plate3_Seq5_TAAGGCGA_CCTAGAGT_S195_R1_001_MM_1


title: F21_D088223_B106234_S141


title: F3_D088223_B106234_S123


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120784_HG5YFBGXB_1_B4_Plate3_Seq5_TCCTGAGC_TTCTAGCT_S218_R1_001_MM_1


title: F4_D088223_B106234_S124


title: F22_D088223_B106234_S142


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120778_HG5YFBGXB_1_D3_Plate3_Seq5_AGGCAGAA_GCGTAAGA_S212_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120792_HG5YFBGXB_1_B5_Plate3_Seq5_GGACTCCT_TTCTAGCT_S226_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120776_HG5YFBGXB_1_B3_Plate3_Seq5_AGGCAGAA_TTCTAGCT_S210_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120768_HG5YFBGXB_1_B2_Plate3_Seq5_CGTACTAG_TTCTAGCT_S202_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120760_HG5YFBGXB_1_B1_Plate3_Seq5_TAAGGCGA_TTCTAGCT_S194_R1_001_MM_1


title: A1_B008645_B008945


title: C20_B008645_B008945


title: F6_D088223_B106234_S126


title: F5_D088223_B106234_S125


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120783_HG5YFBGXB_1_A4_Plate3_Seq5_TCCTGAGC_TCGACTAG_S217_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120815_HG5YFBGXB_1_A8_Plate3_Seq5_CGAGGCTG_TCGACTAG_S249_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120775_HG5YFBGXB_1_A3_Plate3_Seq5_AGGCAGAA_TCGACTAG_S209_R1_001_MM_1


title: F9_D088223_B106234_S129


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120767_HG5YFBGXB_1_A2_Plate3_Seq5_CGTACTAG_TCGACTAG_S201_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120759_HG5YFBGXB_1_A1_Plate3_Seq5_TAAGGCGA_TCGACTAG_S193_R1_001_MM_1


title: G11_D088223_B106234_S155


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120710_HG5YFBGXB_1_H6_Plate2_Seq5_ATGCGCAG_TCTCTCCG_S144_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120734_HG5YFBGXB_1_H9_Plate2_Seq5_CCTAAGAC_TCTCTCCG_S168_R1_001_MM_1


title: G13_D088223_B106234_S157


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120702_HG5YFBGXB_1_H5_Plate2_Seq5_TACGCTGC_TCTCTCCG_S136_R1_001_MM_1


title: G14_D088223_B106234_S158


title: G15_D088223_B106234_S159


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120686_HG5YFBGXB_1_H3_Plate2_Seq5_GCGTAGTA_TCTCTCCG_S120_R1_001_MM_1


title: G16_D088223_B106234_S160


title: C4_B008638_B010276


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120670_HG5YFBGXB_1_H1_Plate2_Seq5_ACTCGCTA_TCTCTCCG_S104_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120733_HG5YFBGXB_1_G9_Plate2_Seq5_CCTAAGAC_CGTCTAAT_S167_R1_001_MM_1


title: F8_D088223_B106234_S128


title: O7_B008647_B008702


title: G20_D088223_B106234_S164


title: G17_D088223_B106234_S161


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120709_HG5YFBGXB_1_G6_Plate2_Seq5_ATGCGCAG_CGTCTAAT_S143_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120701_HG5YFBGXB_1_G5_Plate2_Seq5_TACGCTGC_CGTCTAAT_S135_R1_001_MM_1


title: G21_D088223_B106234_S165


title: G2_D088223_B106234_S146


title: G10_D088223_B106234_S154


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120685_HG5YFBGXB_1_G3_Plate2_Seq5_GCGTAGTA_CGTCTAAT_S119_R1_001_MM_1


title: G18_D088223_B106234_S162


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120693_HG5YFBGXB_1_G4_Plate2_Seq5_CGGAGCCT_CGTCTAAT_S127_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120708_HG5YFBGXB_1_F6_Plate2_Seq5_ATGCGCAG_CTAAGCCT_S142_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120678_HG5YFBGXB_1_H2_Plate2_Seq5_GGAGCTAC_TCTCTCCG_S112_R1_001_MM_1


title: G12_D088223_B106234_S156


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120668_HG5YFBGXB_1_F1_Plate2_Seq5_ACTCGCTA_CTAAGCCT_S102_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120723_HG5YFBGXB_1_E8_Plate2_Seq5_ACTGAGCG_AAGGAGTA_S157_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120700_HG5YFBGXB_1_F5_Plate2_Seq5_TACGCTGC_CTAAGCCT_S134_R1_001_MM_1


title: A8_B008647_B008702


title: E1_B008645_B008945


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120707_HG5YFBGXB_1_E6_Plate2_Seq5_ATGCGCAG_AAGGAGTA_S141_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120699_HG5YFBGXB_1_E5_Plate2_Seq5_TACGCTGC_AAGGAGTA_S133_R1_001_MM_1


title: J1_B008651_B008698


title: A9_B008647_B008702


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120691_HG5YFBGXB_1_E4_Plate2_Seq5_CGGAGCCT_AAGGAGTA_S125_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120669_HG5YFBGXB_1_G1_Plate2_Seq5_ACTCGCTA_CGTCTAAT_S103_R1_001_MM_1


title: B11_B008647_B008702


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120683_HG5YFBGXB_1_E3_Plate2_Seq5_GCGTAGTA_AAGGAGTA_S117_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120675_HG5YFBGXB_1_E2_Plate2_Seq5_GGAGCTAC_AAGGAGTA_S109_R1_001_MM_1


title: G4_D088223_B106234_S148


title: G11_B008647_B008702


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120667_HG5YFBGXB_1_E1_Plate2_Seq5_ACTCGCTA_AAGGAGTA_S101_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120676_HG5YFBGXB_1_F2_Plate2_Seq5_GGAGCTAC_CTAAGCCT_S110_R1_001_MM_1


title: F8_B008647_B008702


title: G3_D088223_B106234_S147


title: I8_B008651_B008698


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120690_HG5YFBGXB_1_D4_Plate2_Seq5_CGGAGCCT_ACTGCATA_S124_R1_001_MM_1


title: F7_B008647_B008702


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120682_HG5YFBGXB_1_D3_Plate2_Seq5_GCGTAGTA_ACTGCATA_S116_R1_001_MM_1


title: G10_B008647_B008702


title: J6_B008651_B008698


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120674_HG5YFBGXB_1_D2_Plate2_Seq5_GGAGCTAC_ACTGCATA_S108_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120666_HG5YFBGXB_1_D1_Plate2_Seq5_ACTCGCTA_ACTGCATA_S100_R1_001_MM_1


title: F10_B008645_B008945


title: B10_B008647_B008702


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120729_HG5YFBGXB_1_C9_Plate2_Seq5_CCTAAGAC_GTAAGGAG_S163_R1_001_MM_1


title: G14_B008647_B008702


title: G13_B008647_B008702


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120721_HG5YFBGXB_1_C8_Plate2_Seq5_ACTGAGCG_GTAAGGAG_S155_R1_001_MM_1


title: G15_B008647_B008702


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120705_HG5YFBGXB_1_C6_Plate2_Seq5_ATGCGCAG_GTAAGGAG_S139_R1_001_MM_1


title: G19_B008647_B008702


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120713_HG5YFBGXB_1_C7_Plate2_Seq5_TAGCGCTC_GTAAGGAG_S147_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120697_HG5YFBGXB_1_C5_Plate2_Seq5_TACGCTGC_GTAAGGAG_S131_R1_001_MM_1


title: F6_B008647_B008702


title: G20_B008647_B008702


title: G1_B008647_B008702


title: G21_B008647_B008702


title: G22_B008647_B008702


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120673_HG5YFBGXB_1_C2_Plate2_Seq5_GGAGCTAC_GTAAGGAG_S107_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120720_HG5YFBGXB_1_B8_Plate2_Seq5_ACTGAGCG_TATCCTCT_S154_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120665_HG5YFBGXB_1_C1_Plate2_Seq5_ACTCGCTA_GTAAGGAG_S99_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120704_HG5YFBGXB_1_B6_Plate2_Seq5_ATGCGCAG_TATCCTCT_S138_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120696_HG5YFBGXB_1_B5_Plate2_Seq5_TACGCTGC_TATCCTCT_S130_R1_001_MM_1


title: G6_B008647_B008702


title: G4_B008647_B008702


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120688_HG5YFBGXB_1_B4_Plate2_Seq5_CGGAGCCT_TATCCTCT_S122_R1_001_MM_1


title: G2_B008647_B008702


title: F12_B008645_B008945


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120681_HG5YFBGXB_1_C3_Plate2_Seq5_GCGTAGTA_GTAAGGAG_S115_R1_001_MM_1


title: G8_B008647_B008702


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120698_HG5YFBGXB_1_D5_Plate2_Seq5_TACGCTGC_ACTGCATA_S132_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120672_HG5YFBGXB_1_B2_Plate2_Seq5_GGAGCTAC_TATCCTCT_S106_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120727_HG5YFBGXB_1_A9_Plate2_Seq5_CCTAAGAC_CTCTCTAT_S161_R1_001_MM_1


title: H11_B008647_B008702


title: G9_B008647_B008702


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120664_HG5YFBGXB_1_B1_Plate2_Seq5_ACTCGCTA_TATCCTCT_S98_R1_001_MM_1


title: H10_B008647_B008702


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120711_HG5YFBGXB_1_A7_Plate2_Seq5_TAGCGCTC_CTCTCTAT_S145_R1_001_MM_1


title: H12_B008647_B008702


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120671_HG5YFBGXB_1_A2_Plate2_Seq5_GGAGCTAC_CTCTCTAT_S105_R1_001_MM_1


title: H15_B008647_B008702


title: F14_B008638_B010276


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120622_HG5YFBGXB_1_H7_Plate1_Seq5_CTCTCTAC_TCTCTCCG_S56_R1_001_MM_1


title: H17_B008647_B008702


title: H19_B008647_B008702


title: H20_B008647_B008702


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120606_HG5YFBGXB_1_H5_Plate1_Seq5_GGACTCCT_TCTCTCCG_S40_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120598_HG5YFBGXB_1_H4_Plate1_Seq5_TCCTGAGC_TCTCTCCG_S32_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120680_HG5YFBGXB_1_B3_Plate2_Seq5_GCGTAGTA_TATCCTCT_S114_R1_001_MM_1


title: H22_B008647_B008702


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120590_HG5YFBGXB_1_H3_Plate1_Seq5_AGGCAGAA_TCTCTCCG_S24_R1_001_MM_1


title: H21_B008647_B008702


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120582_HG5YFBGXB_1_H2_Plate1_Seq5_CGTACTAG_TCTCTCCG_S16_R1_001_MM_1


title: H14_B008647_B008702


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120695_HG5YFBGXB_1_A5_Plate2_Seq5_TACGCTGC_CTCTCTAT_S129_R1_001_MM_1


title: H7_B008647_B008702


title: H8_B008647_B008702


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120605_HG5YFBGXB_1_G5_Plate1_Seq5_GGACTCCT_CGTCTAAT_S39_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120574_HG5YFBGXB_1_H1_Plate1_Seq5_TAAGGCGA_TCTCTCCG_S8_R1_001_MM_1


title: H5_B008647_B008702


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120597_HG5YFBGXB_1_G4_Plate1_Seq5_TCCTGAGC_CGTCTAAT_S31_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120613_HG5YFBGXB_1_G6_Plate1_Seq5_TAGGCATG_CGTCTAAT_S47_R1_001_MM_1


title: H3_B008647_B008702


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120679_HG5YFBGXB_1_A3_Plate2_Seq5_GCGTAGTA_CTCTCTAT_S113_R1_001_MM_1


title: H16_B008647_B008702


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120663_HG5YFBGXB_1_A1_Plate2_Seq5_ACTCGCTA_CTCTCTAT_S97_R1_001_MM_1


title: F14_B008645_B008945


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120589_HG5YFBGXB_1_G3_Plate1_Seq5_AGGCAGAA_CGTCTAAT_S23_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120614_HG5YFBGXB_1_H6_Plate1_Seq5_TAGGCATG_TCTCTCCG_S48_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120573_HG5YFBGXB_1_G1_Plate1_Seq5_TAAGGCGA_CGTCTAAT_S7_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120620_HG5YFBGXB_1_F7_Plate1_Seq5_CTCTCTAC_CTAAGCCT_S54_R1_001_MM_1


title: I11_B008647_B008702


title: G22_B008645_B008945


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120612_HG5YFBGXB_1_F6_Plate1_Seq5_TAGGCATG_CTAAGCCT_S46_R1_001_MM_1


title: H2_B008647_B008702


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120604_HG5YFBGXB_1_F5_Plate1_Seq5_GGACTCCT_CTAAGCCT_S38_R1_001_MM_1


title: G3_B008638_B010276


title: G4_B008638_B010276


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120588_HG5YFBGXB_1_F3_Plate1_Seq5_AGGCAGAA_CTAAGCCT_S22_R1_001_MM_1


title: G4_B008645_B008945


title: G5_B008638_B010276


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120596_HG5YFBGXB_1_F4_Plate1_Seq5_TCCTGAGC_CTAAGCCT_S30_R1_001_MM_1


title: G5_B008645_B008945


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120580_HG5YFBGXB_1_F2_Plate1_Seq5_CGTACTAG_CTAAGCCT_S14_R1_001_MM_1


title: H9_B008647_B008702


title: G6_B008645_B008945


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120572_HG5YFBGXB_1_F1_Plate1_Seq5_TAAGGCGA_CTAAGCCT_S6_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120619_HG5YFBGXB_1_E7_Plate1_Seq5_CTCTCTAC_AAGGAGTA_S53_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120611_HG5YFBGXB_1_E6_Plate1_Seq5_TAGGCATG_AAGGAGTA_S45_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120579_HG5YFBGXB_1_E2_Plate1_Seq5_CGTACTAG_AAGGAGTA_S13_R1_001_MM_1


title: A7_B008645_B008945


title: G7_B008638_B010276


title: H10_B008645_B008945


title: G8_B008645_B008945


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120571_HG5YFBGXB_1_E1_Plate1_Seq5_TAAGGCGA_AAGGAGTA_S5_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120610_HG5YFBGXB_1_D6_Plate1_Seq5_TAGGCATG_ACTGCATA_S44_R1_001_MM_1


title: H17_B008645_B008945


title: H11_B008638_B010276


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120602_HG5YFBGXB_1_D5_Plate1_Seq5_GGACTCCT_ACTGCATA_S36_R1_001_MM_1


title: H19_B008645_B008945


title: H15_B008645_B008945


title: H22_B008638_B010276


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120586_HG5YFBGXB_1_D3_Plate1_Seq5_AGGCAGAA_ACTGCATA_S20_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120570_HG5YFBGXB_1_D1_Plate1_Seq5_TAAGGCGA_ACTGCATA_S4_R1_001_MM_1


title: H22_B008645_B008945


title: H6_B008638_B010276


title: H3_B008645_B008945


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120617_HG5YFBGXB_1_C7_Plate1_Seq5_CTCTCTAC_GTAAGGAG_S51_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120609_HG5YFBGXB_1_C6_Plate1_Seq5_TAGGCATG_GTAAGGAG_S43_R1_001_MM_1


title: H8_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120603_HG5YFBGXB_1_E5_Plate1_Seq5_GGACTCCT_AAGGAGTA_S37_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120601_HG5YFBGXB_1_C5_Plate1_Seq5_GGACTCCT_GTAAGGAG_S35_R1_001_MM_1


title: H9_B008640_B010275


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120587_HG5YFBGXB_1_E3_Plate1_Seq5_AGGCAGAA_AAGGAGTA_S21_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120585_HG5YFBGXB_1_C3_Plate1_Seq5_AGGCAGAA_GTAAGGAG_S19_R1_001_MM_1


title: I22_B008640_B010275


title: L2_B008640_B010275


title: L16_B008640_B010275


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120600_HG5YFBGXB_1_B5_Plate1_Seq5_GGACTCCT_TATCCTCT_S34_R1_001_MM_1


title: M15_B008640_B010275


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120569_HG5YFBGXB_1_C1_Plate1_Seq5_TAAGGCGA_GTAAGGAG_S3_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120608_HG5YFBGXB_1_B6_Plate1_Seq5_TAGGCATG_TATCCTCT_S42_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120594_HG5YFBGXB_1_D4_Plate1_Seq5_TCCTGAGC_ACTGCATA_S28_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120584_HG5YFBGXB_1_B3_Plate1_Seq5_AGGCAGAA_TATCCTCT_S18_R1_001_MM_1


title: B14_B008640_B010275


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120592_HG5YFBGXB_1_B4_Plate1_Seq5_TCCTGAGC_TATCCTCT_S26_R1_001_MM_1


title: N5_B008640_B010275


title: A12_B008648_B008695


title: A13_B008648_B008695


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120576_HG5YFBGXB_1_B2_Plate1_Seq5_CGTACTAG_TATCCTCT_S10_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120568_HG5YFBGXB_1_B1_Plate1_Seq5_TAAGGCGA_TATCCTCT_S2_R1_001_MM_1


title: A14_B008648_B008695


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120615_HG5YFBGXB_1_A7_Plate1_Seq5_CTCTCTAC_CTCTCTAT_S49_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120599_HG5YFBGXB_1_A5_Plate1_Seq5_GGACTCCT_CTCTCTAT_S33_R1_001_MM_1


title: A1_B008648_B008695


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120607_HG5YFBGXB_1_A6_Plate1_Seq5_TAGGCATG_CTCTCTAT_S41_R1_001_MM_1


title: A15_B008648_B008695


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq5.csv
BSSE_QGF_120583_HG5YFBGXB_1_A3_Plate1_Seq5_AGGCAGAA_CTCTCTAT_S17_R1_001_MM_1


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120575_HG5YFBGXB_1_A2_Plate1_Seq5_CGTACTAG_CTCTCTAT_S9_R1_001_MM_1


title: A2_B008648_B008695


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120577_HG5YFBGXB_1_C2_Plate1_Seq5_CGTACTAG_GTAAGGAG_S11_R1_001_MM_1


title: A6_B008648_B008695


title: A7_B008648_B008695


description:
For kinship info see Metadata_Seq5
CountMatrix_Seq5.csv
BSSE_QGF_120567_HG5YFBGXB_1_A1_Plate1_Seq5_TAAGGCGA_CTCTCTAT_S1_R1_001_MM_1


title: M7_B008648_B008695


title: M3_B008648_B008695


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118858_HCKFFBGXB_1_H7_Plate4_Seq4_TAGCGCTC_TTATGCGA_S344_R1_001_MM_1


title: C7_B008640_B010275


title: M9_B008648_B008695


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118834_HCKFFBGXB_1_H4_Plate4_Seq4_CGGAGCCT_TTATGCGA_S320_R1_001_MM_1


title: N14_B008648_B008695


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118850_HCKFFBGXB_1_H6_Plate4_Seq4_ATGCGCAG_TTATGCGA_S336_R1_001_MM_1


title: N16_B008648_B008695


title: N17_B008648_B008695


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118842_HCKFFBGXB_1_H5_Plate4_Seq4_TACGCTGC_TTATGCGA_S328_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118826_HCKFFBGXB_1_H3_Plate4_Seq4_GCGTAGTA_TTATGCGA_S312_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118865_HCKFFBGXB_1_G8_Plate4_Seq4_ACTGAGCG_GAGCCTTA_S351_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118810_HCKFFBGXB_1_H1_Plate4_Seq4_ACTCGCTA_TTATGCGA_S296_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118818_HCKFFBGXB_1_H2_Plate4_Seq4_GGAGCTAC_TTATGCGA_S304_R1_001_MM_1


title: A21_B008648_B008695


title: N22_B008648_B008695


title: N4_B008648_B008695


title: N21_B008648_B008695


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118841_HCKFFBGXB_1_G5_Plate4_Seq4_TACGCTGC_GAGCCTTA_S327_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118857_HCKFFBGXB_1_G7_Plate4_Seq4_TAGCGCTC_GAGCCTTA_S343_R1_001_MM_1


title: N8_B008648_B008695


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118866_HCKFFBGXB_1_H8_Plate4_Seq4_ACTGAGCG_TTATGCGA_S352_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118833_HCKFFBGXB_1_G4_Plate4_Seq4_CGGAGCCT_GAGCCTTA_S319_R1_001_MM_1


title: O11_B008648_B008695


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118849_HCKFFBGXB_1_G6_Plate4_Seq4_ATGCGCAG_GAGCCTTA_S335_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118825_HCKFFBGXB_1_G3_Plate4_Seq4_GCGTAGTA_GAGCCTTA_S311_R1_001_MM_1


title: O14_B008648_B008695


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118817_HCKFFBGXB_1_G2_Plate4_Seq4_GGAGCTAC_GAGCCTTA_S303_R1_001_MM_1


title: O16_B008648_B008695


title: C8_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118809_HCKFFBGXB_1_G1_Plate4_Seq4_ACTCGCTA_GAGCCTTA_S295_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118856_HCKFFBGXB_1_F7_Plate4_Seq4_TAGCGCTC_AAGGCTAT_S342_R1_001_MM_1


title: O22_B008648_B008695


title: O5_B008648_B008695


title: O2_B008648_B008695


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118840_HCKFFBGXB_1_F5_Plate4_Seq4_TACGCTGC_AAGGCTAT_S326_R1_001_MM_1


title: O18_B008648_B008695


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118824_HCKFFBGXB_1_F3_Plate4_Seq4_GCGTAGTA_AAGGCTAT_S310_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118816_HCKFFBGXB_1_F2_Plate4_Seq4_GGAGCTAC_AAGGCTAT_S302_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118808_HCKFFBGXB_1_F1_Plate4_Seq4_ACTCGCTA_AAGGCTAT_S294_R1_001_MM_1


title: G3_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118855_HCKFFBGXB_1_E7_Plate4_Seq4_TAGCGCTC_CTATTAAG_S341_R1_001_MM_1


title: E17_B008640_B010275


title: G3_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118863_HCKFFBGXB_1_E8_Plate4_Seq4_ACTGAGCG_CTATTAAG_S349_R1_001_MM_1


title: G7_B008649_B008703


title: G4_B008639_B008701


title: G6_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118847_HCKFFBGXB_1_E6_Plate4_Seq4_ATGCGCAG_CTATTAAG_S333_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118839_HCKFFBGXB_1_E5_Plate4_Seq4_TACGCTGC_CTATTAAG_S325_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118823_HCKFFBGXB_1_E3_Plate4_Seq4_GCGTAGTA_CTATTAAG_S309_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118848_HCKFFBGXB_1_F6_Plate4_Seq4_ATGCGCAG_AAGGCTAT_S334_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118807_HCKFFBGXB_1_E1_Plate4_Seq4_ACTCGCTA_CTATTAAG_S293_R1_001_MM_1


title: H17_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118870_HCKFFBGXB_1_D9_Plate4_Seq4_CCTAAGAC_GCGTAAGA_S356_R1_001_MM_1


title: H16_B008639_B008701


title: O15_B008648_B008695


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118815_HCKFFBGXB_1_E2_Plate4_Seq4_GGAGCTAC_CTATTAAG_S301_R1_001_MM_1


title: H14_B008649_B008703


title: H21_B008639_B008701


title: H20_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118862_HCKFFBGXB_1_D8_Plate4_Seq4_ACTGAGCG_GCGTAAGA_S348_R1_001_MM_1


title: H15_B008649_B008703


title: H19_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118830_HCKFFBGXB_1_D4_Plate4_Seq4_CGGAGCCT_GCGTAAGA_S316_R1_001_MM_1


title: H2_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118854_HCKFFBGXB_1_D7_Plate4_Seq4_TAGCGCTC_GCGTAAGA_S340_R1_001_MM_1


title: H4_B008649_B008703


title: E18_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118814_HCKFFBGXB_1_D2_Plate4_Seq4_GGAGCTAC_GCGTAAGA_S300_R1_001_MM_1


title: H8_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118822_HCKFFBGXB_1_D3_Plate4_Seq4_GCGTAGTA_GCGTAAGA_S308_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118861_HCKFFBGXB_1_C8_Plate4_Seq4_ACTGAGCG_CCTAGAGT_S347_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118806_HCKFFBGXB_1_D1_Plate4_Seq4_ACTCGCTA_GCGTAAGA_S292_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118869_HCKFFBGXB_1_C9_Plate4_Seq4_CCTAAGAC_CCTAGAGT_S355_R1_001_MM_1


title: I11_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118853_HCKFFBGXB_1_C7_Plate4_Seq4_TAGCGCTC_CCTAGAGT_S339_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118845_HCKFFBGXB_1_C6_Plate4_Seq4_ATGCGCAG_CCTAGAGT_S331_R1_001_MM_1


title: I16_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118821_HCKFFBGXB_1_C3_Plate4_Seq4_GCGTAGTA_CCTAGAGT_S307_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118805_HCKFFBGXB_1_C1_Plate4_Seq4_ACTCGCTA_CCTAGAGT_S291_R1_001_MM_1


title: E4_B008640_B010275


title: K1_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118852_HCKFFBGXB_1_B7_Plate4_Seq4_TAGCGCTC_TTCTAGCT_S338_R1_001_MM_1


title: K2_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118846_HCKFFBGXB_1_D6_Plate4_Seq4_ATGCGCAG_GCGTAAGA_S332_R1_001_MM_1


title: K5_B008649_B008703


title: K5_B008639_B008701


title: K4_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118836_HCKFFBGXB_1_B5_Plate4_Seq4_TACGCTGC_TTCTAGCT_S322_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118828_HCKFFBGXB_1_B4_Plate4_Seq4_CGGAGCCT_TTCTAGCT_S314_R1_001_MM_1


title: K8_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118844_HCKFFBGXB_1_B6_Plate4_Seq4_ATGCGCAG_TTCTAGCT_S330_R1_001_MM_1


title: K2_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118820_HCKFFBGXB_1_B3_Plate4_Seq4_GCGTAGTA_TTCTAGCT_S306_R1_001_MM_1


title: L11_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118812_HCKFFBGXB_1_B2_Plate4_Seq4_GGAGCTAC_TTCTAGCT_S298_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118843_HCKFFBGXB_1_A6_Plate4_Seq4_ATGCGCAG_TCGACTAG_S329_R1_001_MM_1


title: L12_B008639_B008701


title: I11_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118835_HCKFFBGXB_1_A5_Plate4_Seq4_TACGCTGC_TCGACTAG_S321_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118827_HCKFFBGXB_1_A4_Plate4_Seq4_CGGAGCCT_TCGACTAG_S313_R1_001_MM_1


title: L14_B008649_B008703


title: E5_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118813_HCKFFBGXB_1_C2_Plate4_Seq4_GGAGCTAC_CCTAGAGT_S299_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118819_HCKFFBGXB_1_A3_Plate4_Seq4_GCGTAGTA_TCGACTAG_S305_R1_001_MM_1


title: L15_B008639_B008701


title: A2_B008640_B010275


title: L15_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118811_HCKFFBGXB_1_A2_Plate4_Seq4_GGAGCTAC_TCGACTAG_S297_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118778_HCKFFBGXB_1_H9_Plate3_Seq4_AAGAGGCA_TTATGCGA_S264_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118770_HCKFFBGXB_1_H8_Plate3_Seq4_CGAGGCTG_TTATGCGA_S256_R1_001_MM_1


title: L18_B008639_B008701


title: L22_B008639_B008701


title: L5_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118746_HCKFFBGXB_1_H5_Plate3_Seq4_GGACTCCT_TTATGCGA_S232_R1_001_MM_1


title: L8_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118762_HCKFFBGXB_1_H7_Plate3_Seq4_CTCTCTAC_TTATGCGA_S248_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118754_HCKFFBGXB_1_H6_Plate3_Seq4_TAGGCATG_TTATGCGA_S240_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118730_HCKFFBGXB_1_H3_Plate3_Seq4_AGGCAGAA_TTATGCGA_S216_R1_001_MM_1


title: O6_B008649_B008703


title: P10_B008639_B008701


title: P11_B008639_B008701


title: O8_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118714_HCKFFBGXB_1_H1_Plate3_Seq4_TAAGGCGA_TTATGCGA_S200_R1_001_MM_1


title: O6_B008639_B008701


title: P16_B008639_B008701


title: P16_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118786_HCKFFBGXB_1_H10_Plate3_Seq4_GTAGAGGA_TTATGCGA_S272_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118722_HCKFFBGXB_1_H2_Plate3_Seq4_CGTACTAG_TTATGCGA_S208_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118738_HCKFFBGXB_1_H4_Plate3_Seq4_TCCTGAGC_TTATGCGA_S224_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118777_HCKFFBGXB_1_G9_Plate3_Seq4_AAGAGGCA_GAGCCTTA_S263_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118737_HCKFFBGXB_1_G4_Plate3_Seq4_TCCTGAGC_GAGCCTTA_S223_R1_001_MM_1


title: L6_B008649_B008703


title: P3_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118721_HCKFFBGXB_1_G2_Plate3_Seq4_CGTACTAG_GAGCCTTA_S207_R1_001_MM_1


title: P3_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118761_HCKFFBGXB_1_G7_Plate3_Seq4_CTCTCTAC_GAGCCTTA_S247_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118753_HCKFFBGXB_1_G6_Plate3_Seq4_TAGGCATG_GAGCCTTA_S239_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118768_HCKFFBGXB_1_F8_Plate3_Seq4_CGAGGCTG_AAGGCTAT_S254_R1_001_MM_1


title: F19_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118745_HCKFFBGXB_1_G5_Plate3_Seq4_GGACTCCT_GAGCCTTA_S231_R1_001_MM_1


title: P5_B008649_B008703


title: P18_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118729_HCKFFBGXB_1_G3_Plate3_Seq4_AGGCAGAA_GAGCCTTA_S215_R1_001_MM_1


title: F1_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118752_HCKFFBGXB_1_F6_Plate3_Seq4_TAGGCATG_AAGGCTAT_S238_R1_001_MM_1


title: A10_D088224_B106233_S10


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118785_HCKFFBGXB_1_G10_Plate3_Seq4_GTAGAGGA_GAGCCTTA_S271_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118736_HCKFFBGXB_1_F4_Plate3_Seq4_TCCTGAGC_AAGGCTAT_S222_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118720_HCKFFBGXB_1_F2_Plate3_Seq4_CGTACTAG_AAGGCTAT_S206_R1_001_MM_1


title: P4_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118784_HCKFFBGXB_1_F10_Plate3_Seq4_GTAGAGGA_AAGGCTAT_S270_R1_001_MM_1


title: P7_B008649_B008703


title: I13_D088224_B106233_S205


title: P1_B008649_B008703


title: I20_D088224_B106233_S212


title: I14_D088224_B106233_S206


title: Root tip, 45 days after fertilization [SAMPLE9_RT]

city: Irapuato

first: Alejandro

last: Aragon Raygoza

state: Guanajuato

address: Km. 9.6 Libramiento Norte Carretera. Irapuato-León

department: UGA/Langebio

country: Mexico

institute: Cinvestav Unidad Irapuato

description: Root tip, replicate 3

data_processing:
Data quality of the raw and proccessed sequencing data with FastQC v.0.11.2
Data was then processed using Trimmomatic v0.32 to discard unpaired reads, reads with a size <60 bp, reads with a quality <20, and to remove the adapters.
Sequencing data from all libraries was used to generate a complete de novo transcriptome from Ceratopteris richardii young sporophyte.
The transcriptome was assembled with Trinity v2.4.0 in the default setting without reads normalization.
The transcript abundance from each sample was quantified with kallisto v.0.44.0 from processed reads against the final version of Ceratopteris transcriptome.
Assembly: Genes were removed according based on low read counts across all samples by using filterByExpr() function and normalized read counts according to the effective library size for each sample using the package edgeR.
Supplementary files format and content: CeratopterisTranscriptome_FilteredGenes_kalisto.edgeR_TPM.txt.gz

organism: Ceratopteris richardii

source_name: Root tip

growth_protocol: Young sporophytes from 15 days after fertilization (daf) were sub-culture in CFM (C-Fern Medium) plus 2% sucrose, 0.5 g/L MES, 200 mg/L CaCl2, 200 mg/L MgSO4·7H2O, pH 6.0, 0.4% Gellan Gum. Plants were grown vertically at 25 ºC with a photoperiod of 16 h/8 h light/dark until the third stem-borne root emerged.

extract_protocol:
Plant organs were grounded in the presence of liquid nitrogen to a fine powder. Samples were transferred to PureLink® Plant RNA Reagent and mixed by inversion until no visible clumps of tissue were observed. We followed the recommended method from the manufacturer, except for the overnight incubation of the aqueous phase with isopropyl alcohol at 4 ºC.
RNA was isolated from plant samples with the to PureLink® Plant RNA Reagent. Samples were resuspended in 50 uL of DEPC-treated water. We sent at least 3 ug of RNA per sample to the Laboratorio de Servicios Genómicos (LABSERGEN) from the Advanced Genomics Unit (LANGEBIO) for library preparation and sequencing.
RNA libraries for RNA-seq were prepared using TruSeq RNA Library Prep Kit v2 following manufacturer's protocols.

value: Hn-n

value: Root tip

value: 45 days after fertilization


title: P8_B008649_B008703

value: patient-derived-xenograft


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118744_HCKFFBGXB_1_F5_Plate3_Seq4_GGACTCCT_AAGGCTAT_S230_R1_001_MM_1


title: Root tip, 45 days after fertilization [SAMPLE8_RT]

description: Root tip, replicate 2


title: P9_B008649_B008703

value: tumor


title: I15_D088224_B106233_S207

value: NSG


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118767_HCKFFBGXB_1_E8_Plate3_Seq4_CGAGGCTG_CTATTAAG_S253_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118728_HCKFFBGXB_1_F3_Plate3_Seq4_AGGCAGAA_AAGGCTAT_S214_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118727_HCKFFBGXB_1_E3_Plate3_Seq4_AGGCAGAA_CTATTAAG_S213_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118759_HCKFFBGXB_1_E7_Plate3_Seq4_CTCTCTAC_CTATTAAG_S245_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118719_HCKFFBGXB_1_E2_Plate3_Seq4_CGTACTAG_CTATTAAG_S205_R1_001_MM_1


title: Root tip, 45 days after fertilization [SAMPLE7_RT]

description: Root tip, replicate 1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118712_HCKFFBGXB_1_F1_Plate3_Seq4_TAAGGCGA_AAGGCTAT_S198_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118760_HCKFFBGXB_1_F7_Plate3_Seq4_CTCTCTAC_AAGGCTAT_S246_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118783_HCKFFBGXB_1_E10_Plate3_Seq4_GTAGAGGA_CTATTAAG_S269_R1_001_MM_1


title: I19_D088224_B106233_S211


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118743_HCKFFBGXB_1_E5_Plate3_Seq4_GGACTCCT_CTATTAAG_S229_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118751_HCKFFBGXB_1_E6_Plate3_Seq4_TAGGCATG_CTATTAAG_S237_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118711_HCKFFBGXB_1_E1_Plate3_Seq4_TAAGGCGA_CTATTAAG_S197_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118735_HCKFFBGXB_1_E4_Plate3_Seq4_TCCTGAGC_CTATTAAG_S221_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118774_HCKFFBGXB_1_D9_Plate3_Seq4_AAGAGGCA_GCGTAAGA_S260_R1_001_MM_1


title: Shoot, 45 days after fertilization [SAMPLE2_SH]

description: Leaves and stem, without any trace of root tissue, replicate 2

source_name: Shoot

value: Shoot


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118766_HCKFFBGXB_1_D8_Plate3_Seq4_CGAGGCTG_GCGTAAGA_S252_R1_001_MM_1


title: Differentiated root, 45 days after fertilization [SAMPLE6_DT]

description: Root tissue without the tip, replicate 3

source_name: Differentiated root

value: Differentiated root


title: A11_D088224_B106233_S11


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118758_HCKFFBGXB_1_D7_Plate3_Seq4_CTCTCTAC_GCGTAAGA_S244_R1_001_MM_1


title: Differentiated root, 45 days after fertilization [SAMPLE5_DT]

description: Root tissue without the tip, replicate 2


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118750_HCKFFBGXB_1_D6_Plate3_Seq4_TAGGCATG_GCGTAAGA_S236_R1_001_MM_1


title: Differentiated root, 45 days after fertilization [SAMPLE4_DT]

description: Root tissue without the tip, replicate 1


title: I8_D088224_B106233_S200


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118710_HCKFFBGXB_1_D1_Plate3_Seq4_TAAGGCGA_GCGTAAGA_S196_R1_001_MM_1


title: J12_D088224_B106233_S228


title: G10_B008640_B010275


title: Shoot, 45 days after fertilization [SAMPLE1_SH]

description: Leaves and stem, without any trace of root tissue, replicate 1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118742_HCKFFBGXB_1_D5_Plate3_Seq4_GGACTCCT_GCGTAAGA_S228_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118773_HCKFFBGXB_1_C9_Plate3_Seq4_AAGAGGCA_CCTAGAGT_S259_R1_001_MM_1


title: I22_D088224_B106233_S214


title: J16_D088224_B106233_S232


title: I2_D088224_B106233_S194


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118734_HCKFFBGXB_1_D4_Plate3_Seq4_TCCTGAGC_GCGTAAGA_S220_R1_001_MM_1


title: J18_D088224_B106233_S234


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118765_HCKFFBGXB_1_C8_Plate3_Seq4_CGAGGCTG_CCTAGAGT_S251_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118749_HCKFFBGXB_1_C6_Plate3_Seq4_TAGGCATG_CCTAGAGT_S235_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118741_HCKFFBGXB_1_C5_Plate3_Seq4_GGACTCCT_CCTAGAGT_S227_R1_001_MM_1


title: G14_B008640_B010275


title: I5_D088224_B106233_S197


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118726_HCKFFBGXB_1_D3_Plate3_Seq4_AGGCAGAA_GCGTAAGA_S212_R1_001_MM_1


title: I6_D088224_B106233_S198


title: Shoot, 45 days after fertilization [SAMPLE3_SH]

description: Leaves and stem, without any trace of root tissue, replicate 3


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118733_HCKFFBGXB_1_C4_Plate3_Seq4_TCCTGAGC_CCTAGAGT_S219_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118782_HCKFFBGXB_1_D10_Plate3_Seq4_GTAGAGGA_GCGTAAGA_S268_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118718_HCKFFBGXB_1_D2_Plate3_Seq4_CGTACTAG_GCGTAAGA_S204_R1_001_MM_1


title: J15_D088224_B106233_S231


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118725_HCKFFBGXB_1_C3_Plate3_Seq4_AGGCAGAA_CCTAGAGT_S211_R1_001_MM_1


title: J19_D088224_B106233_S235


title: J22_D088224_B106233_S238


title: J2_D088224_B106233_S218


title: J8_D088224_B106233_S224


title: J6_D088224_B106233_S222


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118781_HCKFFBGXB_1_C10_Plate3_Seq4_GTAGAGGA_CCTAGAGT_S267_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118709_HCKFFBGXB_1_C1_Plate3_Seq4_TAAGGCGA_CCTAGAGT_S195_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118757_HCKFFBGXB_1_C7_Plate3_Seq4_CTCTCTAC_CCTAGAGT_S243_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118772_HCKFFBGXB_1_B9_Plate3_Seq4_AAGAGGCA_TTCTAGCT_S258_R1_001_MM_1


title: K11_D088224_B106233_S251


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118713_HCKFFBGXB_1_G1_Plate3_Seq4_TAAGGCGA_GAGCCTTA_S199_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118764_HCKFFBGXB_1_B8_Plate3_Seq4_CGAGGCTG_TTCTAGCT_S250_R1_001_MM_1


title: K17_D088224_B106233_S257


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118756_HCKFFBGXB_1_B7_Plate3_Seq4_CTCTCTAC_TTCTAGCT_S242_R1_001_MM_1


title: K18_D088224_B106233_S258


title: M6_D088224_B106233_S294


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118748_HCKFFBGXB_1_B6_Plate3_Seq4_TAGGCATG_TTCTAGCT_S234_R1_001_MM_1


title: M9_D088224_B106233_S297


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118732_HCKFFBGXB_1_B4_Plate3_Seq4_TCCTGAGC_TTCTAGCT_S218_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118724_HCKFFBGXB_1_B3_Plate3_Seq4_AGGCAGAA_TTCTAGCT_S210_R1_001_MM_1


title: N10_D088224_B106233_S322


title: N14_D088224_B106233_S326


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118780_HCKFFBGXB_1_B10_Plate3_Seq4_GTAGAGGA_TTCTAGCT_S266_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118708_HCKFFBGXB_1_B1_Plate3_Seq4_TAAGGCGA_TTCTAGCT_S194_R1_001_MM_1


title: J4_D088224_B106233_S220


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118717_HCKFFBGXB_1_C2_Plate3_Seq4_CGTACTAG_CCTAGAGT_S203_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118716_HCKFFBGXB_1_B2_Plate3_Seq4_CGTACTAG_TTCTAGCT_S202_R1_001_MM_1


title: N15_D088224_B106233_S327


title: K13_D088224_B106233_S253


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118771_HCKFFBGXB_1_A9_Plate3_Seq4_AAGAGGCA_TCGACTAG_S257_R1_001_MM_1


title: N18_D088224_B106233_S330


title: G1_B008640_B010275


title: N19_D088224_B106233_S331


title: K14_D088224_B106233_S254


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118763_HCKFFBGXB_1_A8_Plate3_Seq4_CGAGGCTG_TCGACTAG_S249_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118755_HCKFFBGXB_1_A7_Plate3_Seq4_CTCTCTAC_TCGACTAG_S241_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118747_HCKFFBGXB_1_A6_Plate3_Seq4_TAGGCATG_TCGACTAG_S233_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118740_HCKFFBGXB_1_B5_Plate3_Seq4_GGACTCCT_TTCTAGCT_S226_R1_001_MM_1


title: N21_D088224_B106233_S333


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118739_HCKFFBGXB_1_A5_Plate3_Seq4_GGACTCCT_TCGACTAG_S225_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118723_HCKFFBGXB_1_A3_Plate3_Seq4_AGGCAGAA_TCGACTAG_S209_R1_001_MM_1


title: N22_D088224_B106233_S334


title: N20_D088224_B106233_S332


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118731_HCKFFBGXB_1_A4_Plate3_Seq4_TCCTGAGC_TCGACTAG_S217_R1_001_MM_1


title: N2_D088224_B106233_S314


title: N5_D088224_B106233_S317


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118779_HCKFFBGXB_1_A10_Plate3_Seq4_GTAGAGGA_TCGACTAG_S265_R1_001_MM_1


title: N7_D088224_B106233_S319


title: N13_D088224_B106233_S325


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118707_HCKFFBGXB_1_A1_Plate3_Seq4_TAAGGCGA_TCGACTAG_S193_R1_001_MM_1


title: O17_D088224_B106233_S353


title: A4_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118682_HCKFFBGXB_1_H9_Plate2_Seq4_CCTAAGAC_TCTCTCCG_S168_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118666_HCKFFBGXB_1_H7_Plate2_Seq4_TAGCGCTC_TCTCTCCG_S152_R1_001_MM_1


title: O18_D088224_B106233_S354


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118658_HCKFFBGXB_1_H6_Plate2_Seq4_ATGCGCAG_TCTCTCCG_S144_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118650_HCKFFBGXB_1_H5_Plate2_Seq4_TACGCTGC_TCTCTCCG_S136_R1_001_MM_1


title: O1_D088224_B106233_S337


title: O19_D088224_B106233_S355


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118642_HCKFFBGXB_1_H4_Plate2_Seq4_CGGAGCCT_TCTCTCCG_S128_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118690_HCKFFBGXB_1_H10_Plate2_Seq4_CGATCAGT_TCTCTCCG_S176_R1_001_MM_1


title: O21_D088224_B106233_S357


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118634_HCKFFBGXB_1_H3_Plate2_Seq4_GCGTAGTA_TCTCTCCG_S120_R1_001_MM_1


title: O20_D088224_B106233_S356


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118618_HCKFFBGXB_1_H1_Plate2_Seq4_ACTCGCTA_TCTCTCCG_S104_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118715_HCKFFBGXB_1_A2_Plate3_Seq4_CGTACTAG_TCGACTAG_S201_R1_001_MM_1


title: O5_D088224_B106233_S341


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118681_HCKFFBGXB_1_G9_Plate2_Seq4_CCTAAGAC_CGTCTAAT_S167_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118673_HCKFFBGXB_1_G8_Plate2_Seq4_ACTGAGCG_CGTCTAAT_S159_R1_001_MM_1


title: O22_D088224_B106233_S358


title: G22_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118657_HCKFFBGXB_1_G6_Plate2_Seq4_ATGCGCAG_CGTCTAAT_S143_R1_001_MM_1


title: D20_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118641_HCKFFBGXB_1_G4_Plate2_Seq4_CGGAGCCT_CGTCTAAT_S127_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118649_HCKFFBGXB_1_G5_Plate2_Seq4_TACGCTGC_CGTCTAAT_S135_R1_001_MM_1


title: C8_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118625_HCKFFBGXB_1_G2_Plate2_Seq4_GGAGCTAC_CGTCTAAT_S111_R1_001_MM_1


title: D15_B008649_B008703


title: G21_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118633_HCKFFBGXB_1_G3_Plate2_Seq4_GCGTAGTA_CGTCTAAT_S119_R1_001_MM_1


title: D10_B008639_B008701


title: D11_B008649_B008703


title: D16_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118689_HCKFFBGXB_1_G10_Plate2_Seq4_CGATCAGT_CGTCTAAT_S175_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118617_HCKFFBGXB_1_G1_Plate2_Seq4_ACTCGCTA_CGTCTAAT_S103_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118680_HCKFFBGXB_1_F9_Plate2_Seq4_CCTAAGAC_CTAAGCCT_S166_R1_001_MM_1


title: D17_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118664_HCKFFBGXB_1_F7_Plate2_Seq4_TAGCGCTC_CTAAGCCT_S150_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118672_HCKFFBGXB_1_F8_Plate2_Seq4_ACTGAGCG_CTAAGCCT_S158_R1_001_MM_1


title: D18_B008649_B008703


title: D1_B008639_B008701


title: D21_B008639_B008701


title: D21_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118665_HCKFFBGXB_1_G7_Plate2_Seq4_TAGCGCTC_CGTCTAAT_S151_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118648_HCKFFBGXB_1_F5_Plate2_Seq4_TACGCTGC_CTAAGCCT_S134_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118656_HCKFFBGXB_1_F6_Plate2_Seq4_ATGCGCAG_CTAAGCCT_S142_R1_001_MM_1


title: G3_B008640_B010275


title: I17_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118640_HCKFFBGXB_1_F4_Plate2_Seq4_CGGAGCCT_CTAAGCCT_S126_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118632_HCKFFBGXB_1_F3_Plate2_Seq4_GCGTAGTA_CTAAGCCT_S118_R1_001_MM_1


title: I18_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118624_HCKFFBGXB_1_F2_Plate2_Seq4_GGAGCTAC_CTAAGCCT_S110_R1_001_MM_1


title: I19_B008649_B008703


title: I18_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118688_HCKFFBGXB_1_F10_Plate2_Seq4_CGATCAGT_CTAAGCCT_S174_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118679_HCKFFBGXB_1_E9_Plate2_Seq4_CCTAAGAC_AAGGAGTA_S165_R1_001_MM_1


title: I20_B008649_B008703


title: I1_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118616_HCKFFBGXB_1_F1_Plate2_Seq4_ACTCGCTA_CTAAGCCT_S102_R1_001_MM_1


title: I22_B008649_B008703


title: E20_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118663_HCKFFBGXB_1_E7_Plate2_Seq4_TAGCGCTC_AAGGAGTA_S149_R1_001_MM_1


title: I2_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118655_HCKFFBGXB_1_E6_Plate2_Seq4_ATGCGCAG_AAGGAGTA_S141_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118647_HCKFFBGXB_1_E5_Plate2_Seq4_TACGCTGC_AAGGAGTA_S133_R1_001_MM_1


title: I2_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118639_HCKFFBGXB_1_E4_Plate2_Seq4_CGGAGCCT_AAGGAGTA_S125_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118623_HCKFFBGXB_1_E2_Plate2_Seq4_GGAGCTAC_AAGGAGTA_S109_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118631_HCKFFBGXB_1_E3_Plate2_Seq4_GCGTAGTA_AAGGAGTA_S117_R1_001_MM_1


title: I9_B008639_B008701


title: J10_B008639_B008701


title: I5_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118615_HCKFFBGXB_1_E1_Plate2_Seq4_ACTCGCTA_AAGGAGTA_S101_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118678_HCKFFBGXB_1_D9_Plate2_Seq4_CCTAAGAC_ACTGCATA_S164_R1_001_MM_1


title: J12_B008649_B008703


title: J14_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118687_HCKFFBGXB_1_E10_Plate2_Seq4_CGATCAGT_AAGGAGTA_S173_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118654_HCKFFBGXB_1_D6_Plate2_Seq4_ATGCGCAG_ACTGCATA_S140_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118662_HCKFFBGXB_1_D7_Plate2_Seq4_TAGCGCTC_ACTGCATA_S148_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118671_HCKFFBGXB_1_E8_Plate2_Seq4_ACTGAGCG_AAGGAGTA_S157_R1_001_MM_1


title: J16_B008649_B008703


title: J15_B008649_B008703


title: E21_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118646_HCKFFBGXB_1_D5_Plate2_Seq4_TACGCTGC_ACTGCATA_S132_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118638_HCKFFBGXB_1_D4_Plate2_Seq4_CGGAGCCT_ACTGCATA_S124_R1_001_MM_1


title: L9_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118630_HCKFFBGXB_1_D3_Plate2_Seq4_GCGTAGTA_ACTGCATA_S116_R1_001_MM_1


title: M11_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118622_HCKFFBGXB_1_D2_Plate2_Seq4_GGAGCTAC_ACTGCATA_S108_R1_001_MM_1


title: L9_B008649_B008703


title: E7_B008640_B010275


title: M12_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118686_HCKFFBGXB_1_D10_Plate2_Seq4_CGATCAGT_ACTGCATA_S172_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118670_HCKFFBGXB_1_D8_Plate2_Seq4_ACTGAGCG_ACTGCATA_S156_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118614_HCKFFBGXB_1_D1_Plate2_Seq4_ACTCGCTA_ACTGCATA_S100_R1_001_MM_1


title: J11_B008649_B008703


title: M14_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118677_HCKFFBGXB_1_C9_Plate2_Seq4_CCTAAGAC_GTAAGGAG_S163_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118661_HCKFFBGXB_1_C7_Plate2_Seq4_TAGCGCTC_GTAAGGAG_S147_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118669_HCKFFBGXB_1_C8_Plate2_Seq4_ACTGAGCG_GTAAGGAG_S155_R1_001_MM_1


title: M15_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118645_HCKFFBGXB_1_C5_Plate2_Seq4_TACGCTGC_GTAAGGAG_S131_R1_001_MM_1


title: M2_B008639_B008701


title: M1_B008649_B008703


title: M21_B008639_B008701


title: M4_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118637_HCKFFBGXB_1_C4_Plate2_Seq4_CGGAGCCT_GTAAGGAG_S123_R1_001_MM_1


title: MT-2

city: Houston

first: Tamer

last: Mohamed

address: 6770 Bertner Avenue

institute: Baylor College of Medicine

data_processing:
Original image data file from Illumina is transformed to raw reads by CASAVA base recognition (Base Calling). Raw data are stored in FASTQ(fq) format files, which contain sequences of reads and corresponding base quality. Each read has four descriptive lines, as indicated below:
HISAT2 is selected to map the filtered sequenced reads to the reference genome Sscrofa11.1. In general, HISAT2 supports genomes of any size, including those larger than 4 billion bases and most of the parameters are set to default.Spliced reads of RNA Seq data can be effictively aligned using HISAT2, which is the fastest system currently available, with equal or better accuracy than any other method. The process is shown by the following figure:
The abundance of transcript reflects gene expression level directly. Gene expression level is estimated by the abundance of transcripts (count of sequencing) that mapped to genome or exon. Read counts is proportional to gene expression level, gene length and sequencing depth. FPKM (short for the expected number of Fragments Per Kilobase of transcript sequence per Millions base pairs sequenced) is the most common method of estimating gene expression levels, which takes the effects into consideration of both sequencing depth and gene length on counting of fragments (Mortazavi et al. 2008).
Assembly: Sscrofa11.1

organism: Sus scrofa

source_name: Pig heart

growth_protocol: Heart slices from pig hearts cultured in Biomimetic Cardiac Tissue Culture Model (CTCM)

extract_protocol:
RNA from hiPS-CMs were isolated using the Qiagen, miRNeasy Micro Kit, #210874, following homogenization of the tissue in QIAzol (Qiagen).
Using the Ovation RNA-seq System v2 Kit (NuGEN),

treatment_protocol: 100 nM tri-iodothyronine (T3) and 1 μM dexamethasone (Dex)

value: Pig heart

tag: treatment group

value: Heart slices cultured for 12 days in mechanical culture with added dexamethazone and T4


title: MT-1

value: Heart slices cultured for 12 days in mechanical culture with added dexamethazone and T3


title: M3_B008639_B008701


title: MC-2

value: Heart slices cultured for 12 days in mechanical culture


title: F12_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118629_HCKFFBGXB_1_C3_Plate2_Seq4_GCGTAGTA_GTAAGGAG_S115_R1_001_MM_1


title: M5_B008649_B008703


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118621_HCKFFBGXB_1_C2_Plate2_Seq4_GGAGCTAC_GTAAGGAG_S107_R1_001_MM_1


title: M6_B008649_B008703


title: M18_B008649_B008703


title: TD-4

value: Heart slices cultured for 12 days in static culture with added dexamethazone and T3


title: M7_B008639_B008701


title: TD-3


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118676_HCKFFBGXB_1_B9_Plate2_Seq4_CCTAAGAC_TATCCTCT_S162_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118653_HCKFFBGXB_1_C6_Plate2_Seq4_ATGCGCAG_GTAAGGAG_S139_R1_001_MM_1


title: M9_B008639_B008701


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118613_HCKFFBGXB_1_C1_Plate2_Seq4_ACTCGCTA_GTAAGGAG_S99_R1_001_MM_1


title: N11_B008639_B008701


title: A1_D088224_B106233_S1


title: I6_B008639_B008701


title: A19_D088224_B106233_S19


title: MC-1


title: M20_B008639_B008701


title: TD-2


title: A20_D088224_B106233_S20


title: A7_D088224_B106233_S7


title: A22_D088224_B106233_S22


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118644_HCKFFBGXB_1_B5_Plate2_Seq4_TACGCTGC_TATCCTCT_S130_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118660_HCKFFBGXB_1_B7_Plate2_Seq4_TAGCGCTC_TATCCTCT_S146_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118652_HCKFFBGXB_1_B6_Plate2_Seq4_ATGCGCAG_TATCCTCT_S138_R1_001_MM_1


title: Ctrl-4

value: Heart slices cultured for 12 days in static culture


title: B19_D088224_B106233_S43


title: Ctrl-3


title: A8_D088224_B106233_S8


title: B10_D088224_B106233_S34


title: B6_D088224_B106233_S30


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118628_HCKFFBGXB_1_B3_Plate2_Seq4_GCGTAGTA_TATCCTCT_S114_R1_001_MM_1

value: bone marrow


title: Ctrl-2


title: B8_D088224_B106233_S32


title: B9_D088224_B106233_S33


title: D0-2

value: Fresh heart slice before culture


title: C12_D088224_B106233_S60


title: C13_D088224_B106233_S61


title: C14_D088224_B106233_S62


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118675_HCKFFBGXB_1_A9_Plate2_Seq4_CCTAAGAC_CTCTCTAT_S161_R1_001_MM_1

value: 12 - 19 weeks

value: wild type


title: C15_D088224_B106233_S63


title: TD-1


title: D0-1


title: Ctrl-1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118659_HCKFFBGXB_1_A7_Plate2_Seq4_TAGCGCTC_CTCTCTAT_S145_R1_001_MM_1


title: C18_D088224_B106233_S66


title: C17_D088224_B106233_S65


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118620_HCKFFBGXB_1_B2_Plate2_Seq4_GGAGCTAC_TATCCTCT_S106_R1_001_MM_1


title: C16_D088224_B106233_S64


title: C21_D088224_B106233_S69


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118667_HCKFFBGXB_1_A8_Plate2_Seq4_ACTGAGCG_CTCTCTAT_S153_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118651_HCKFFBGXB_1_A6_Plate2_Seq4_ATGCGCAG_CTCTCTAT_S137_R1_001_MM_1


title: F21_B008640_B010275


title: C4_D088224_B106233_S52


title: Tunicamycin donor2

city: New York

first: HSS Genomics

last: Research Center

state: New York

address: 535 E 70th St

department: Research

institute: Hospital for Special Surgery

data_processing:
fastp -q 15 -n 10 -l 20  -i target_R1.fastq (fastp v0.19.10)
STAR --readFilesIn target_R1.fastq --outSAMtype BAM Unsorted --outFilterMultimapNmax 4 --outFilterType BySJout --outSAMmultNmax 1 --outFilterMismatchNoverReadLmax 0.1 --outSAMstrandField intronMotif --sjdbGTFfile gencode.gtf --outReadsUnmapped Fastx (STAR v2.7.3a)
samtools sort -n target_STAR.Aligned.out.bam | samtools fixmate -rm - - | samtools sort - > target_STAR.Aligned.sortedByCoord.out.bam (samtools v1.9)
featureCounts -p -a gencode.gtf -s 2 -o reverse_stranded.txt target_STAR.Aligned.sortedByCoord.out.bam (featureCounts v2.0.1)
Assembly: hg38
Supplementary files format and content: Tab delimited file containing reads per gene across samples

source_name: blood

extract_protocol:
RNA was extracted using RNA Qiagen extraction kit
Library was prepared using NEB Next single cell/Low input RNA library

value: blood

value: pDCs

tag: disease state

value: healthy

value: Tunicamycin


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118643_HCKFFBGXB_1_A5_Plate2_Seq4_TACGCTGC_CTCTCTAT_S129_R1_001_MM_1


title: TLR9-L (C274) donor2


title: Medium donor2

value: medium


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118635_HCKFFBGXB_1_A4_Plate2_Seq4_CGGAGCCT_CTCTCTAT_S121_R1_001_MM_1


title: C6_D088224_B106233_S54

value: patient-derived-xenograft

value: tumor

value: NSG


title: Thapsigargin donor1

value: Thapsigargin


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118627_HCKFFBGXB_1_A3_Plate2_Seq4_GCGTAGTA_CTCTCTAT_S113_R1_001_MM_1


title: F20_B008640_B010275


title: C8_D088224_B106233_S56


title: C7_D088224_B106233_S55


title: TLR9-L (C274)+Tunicamycin donor1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118619_HCKFFBGXB_1_A2_Plate2_Seq4_GGAGCTAC_CTCTCTAT_S105_R1_001_MM_1


title: C9_D088224_B106233_S57


title: D16_D088224_B106233_S88


title: Tunicamycin donor1


title: G4_B008640_B010275


title: C5_D088224_B106233_S53


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118683_HCKFFBGXB_1_A10_Plate2_Seq4_CGATCAGT_CTCTCTAT_S169_R1_001_MM_1


title: G5_B008640_B010275


title: Thapsigargin donor3


title: TLR9-L (C274)+Tunicamycin donor3


title: TLR9-L (C274) donor1


title: Tunicamycin donor3


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118586_HCKFFBGXB_1_H9_Plate1_Seq4_AAGAGGCA_TCTCTCCG_S72_R1_001_MM_1


title: G8_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118578_HCKFFBGXB_1_H8_Plate1_Seq4_CGAGGCTG_TCTCTCCG_S64_R1_001_MM_1


title: H10_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118570_HCKFFBGXB_1_H7_Plate1_Seq4_CTCTCTAC_TCTCTCCG_S56_R1_001_MM_1


title: G9_B008640_B010275


title: H11_B008640_B010275


title: A9_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118562_HCKFFBGXB_1_H6_Plate1_Seq4_TAGGCATG_TCTCTCCG_S48_R1_001_MM_1


title: TLR9-L (C274) donor3


title: H12_B008640_B010275


title: H13_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118554_HCKFFBGXB_1_H5_Plate1_Seq4_GGACTCCT_TCTCTCCG_S40_R1_001_MM_1


title: H17_B008640_B010275


title: H15_B008640_B010275


title: Thapsigargin donor2


title: G7_B008640_B010275


title: H19_B008640_B010275


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118530_HCKFFBGXB_1_H2_Plate1_Seq4_CGTACTAG_TCTCTCCG_S16_R1_001_MM_1


title: H18_B008640_B010275


title: G6_B008640_B010275


title: H20_B008640_B010275


title: H1_B008640_B010275


title: TLR9-L (C274)+Tunicamycin donor2


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118522_HCKFFBGXB_1_H1_Plate1_Seq4_TAAGGCGA_TCTCTCCG_S8_R1_001_MM_1


description:
For kinship info see Metadata_Seq4
CountMatrix_Seq4.csv
BSSE_QGF_118585_HCKFFBGXB_1_G9_Plate1_Seq4_AAGAGGCA_CGTCTAAT_S71_R1_001_MM_1


title: H22_B008640_B010275


title: B12_B008640_B010275


title: Medium donor3


title: E19_B008648_B008695


title: E22_B008648_B008695


title: RS-rep1

city: Beijing

first: Qiao

last: Song

address: No.45 Changchun Street

department: Department of Clinical laboratory

institute: Xuanwu Hospital, Capital Medical University

data_processing:
Data quality was controlled using FastQC (v.0.11.9, www.bioinformatics.babraham.ac.uk/projects/fastqc). After trimming the adaptor and removing low-quality reads, the obtained clean data were aligned to human genome hg38 by the Burrows–Wheeler Aligner tool (v.0.7.10). A peak calling analysis was conducted using MASC2 (v.2,2) with the following parameters: macs2 callpeak - nomodel - f BAMPE–keep - dup 1 - q 0.05 - B–SPMR.
Assembly: hg38

source_name: cell line

extract_protocol:
After 50,000 2BS cells were counted, Tn5 transposase was used to simultaneously cut the hierarchically folded DNA. Native nuclei were purified by MinElute PCR Purification Kit (Qiagen, 28004) and amplified by six cycles of quantitative real-time PCR. Genomic DNA of 10 ng was used as input control.
ATAC-seq libraries were sequenced on the Illumina Hiseq PE150 sequencer or BGISEQ-500 to obtain 60–130 million of 2 × 150 bp paired-end sequencing reads per sample.

value: cell line

tag: phenotype

value: Senescence


title: RS-Growing-rep1

value: Growing


title: C13_B008640_B010275


title: E7_B008648_B008695