title: astro_NIL_donor4

city: Montréal

first: Nathalie

last: Arbour

state: Quebec

address: 900 Saint Denis Street

country: Canada

institute: CHUM-University of Montreal

hyb_protocol: After fragmentation and labeling, 2.8 µg DNA target was hybridized on Clariom™S HT, Human (Thermo Fisher Scientific)

scan_protocol: Arrays were scanned on the GeneTitan® Instrument (Thermo Fisher Scientific) for Hyb-Wash-Scan automated workflow.

data_processing: Data was analyzed using R. Normalization of CEL files was done using the function rma from the oligo Bioconductor package. Differential expression analysis was performed using the limma Bioconductor package with linear modeling, accounting for thee paired nature of samples. Significance was assessed  as followed: absolute fold-change > 1.3 and adjusted p-value < 0.15

source_name: Astrocytes, isolated from human fetal brain

label_protocol: Sense-strand cDNA was synthesized from 100 ng of total RNA, and fragmentation and labeling were performed to produce ss-cDNA with the GeneChip® WT Terminal Labeling Kit according to manufacturer’s instructions (Thermo Fisher Scientific).

growth_protocol: Astrocytes from 4 human fetal frain donors were first isolated and put in culture in  Dulbecco's Modified Eagle Medium supplemented with 5% (v/v) FBS, penicillin (100 U/mL), streptomycin (100 ug/mL).

extract_protocol: RNA samples were purified using RNeasy plus mini kit according to the manufacturer’s protocol (Qiagen, Toronto, ON Canada). RNA quality was checked on RNA Nano chips using a 2100 bioanalyser (Agilent Technologies). All samples had a RNA integrity number (RINs) > 8.3.

treatment_protocol: Astrocytes were stimulated or not for 48h with recombinant human IL-1b (20 ng/ml). Astrocytes were subsequently exposed to IL-27 (100 ng/mL) for 24h.

value: Fetal brain

tag: age

value: 18 weeks

tag: stimulation


title: astro_NIL + IL-27_donor3

status: Public on Sep 15 2022

type: RNA

department: Neuroscience

label: biotin

molecule: total RNA

organism: Homo sapiens

tag: tissue

value: 19 weeks


title: astro_NIL + IL-27_donor4


title: astro_IL-1b_donor4


title: astro_IL-1b + IL-27_donor1

value: IL-1beta, then IL-27


title: astro_NIL_donor1


title: astro_IL-1b_donor2


title: astro_IL-1b_donor1


title: astro_NIL + IL-27_donor1


title: astrol_IL-1b + IL-27_donor4


title: astro_IL-1b + IL-27_donor3


title: astro_IL-1b_donor3


title: hPSC early cardiomyocytes at Day 6 of differentiation (D6_D07)_gene

city: Sao Paulo

first: Jose Eduardo

last: Krieger

state: Sao Paulo

address: 44 Av. Dr. Enéas de Carvalho Aguiar

department: Medical School

country: Brazil

institute: University of Sao Paulo

hyb_protocol: Samples were hybridized with GeneChipTM    WT PLUS Reagent Kit (Affymetrix) and scanned at GeneTitan ™ Microarray System

scan_protocol: The entire protocol for processing, running and scanning the samples followed the manufacturer's instruction [GeneChip ™ WT PLUS Reagent Kit Manual] at GeneTitan ™ Microarray System

data_processing: The .CEL files were analyzed using the Transcriptome Analysis Console software (TAC v4.0) from AppliedBiosystems

source_name: hPSC-derived early cardiomyocytes

label_protocol: Samples were enzymatically fragmented and biotinylated using RNA samples for whole transcriptome  expression analysis with GeneChipTM Whole Transcript (WT) Expression Arrays (appliedbiosystems)

growth_protocol: Prior to cardiac differentiation hPSC cells were maintained in E8:mTeSR [(1:1), Stemcell Technologies, #85850] with daily change. Established hPSC-CM were cultivated with RPMI-1640 supplemented with B27 and insulin until the end of protocol.

extract_protocol: We used the RNeasy Micro Kit (Qiagen) for total RNA isolation

treatment_protocol: Cardiac cell differentiation protocol followed Burridge et al., 2014 specifications. No treatment was applied after cell differentiation.

tag: cell type

value: hPSC-derived early cardiomyocytes

tag: cell lineage

value: Coriell Cell Repositories (AICS-0037-172)


title: hPSC early cardiomyocytes at Day 8 of differentiation (D8_E07)_gene


title: hPSC cardiomyocytes at Day 30 of differentiation (D30_G07)_gene

source_name: hPSC-derived cardiomyocytes

value: hPSC-derived cardiomyocytes


title: hPSC progenitor cardiomyocytes at Day 2 of differentiation (D2_B07)_gene

source_name: hPSC-derived cardiac progenitors

value: hPSC-derived cardiac progenitors


title: astro_ NIL_donor2


title: astro_NIL + IL-27_donor2


title: Hela TLN68 rep 3

type: SRA

city: Orsay

first: Olivier

last: Namy

address: Rue Gregor Mendel, bat 400

country: France

institute: CNRS, Université Paris-Sud

description:
polysome extraction
HeLaTln68.3

library_source: transcriptomic

data_processing:
Library strategy: Ribo-seq
RiboDoc package
Sequenced reads were trimmed for adaptor sequence, and size filtered to keep only reads between 25-35nts
Reads are mapped usingHisat2 and bowtie2 on Hg38
Differential expression is obtained using DESeq2 package
metagene analysis of reads distribution to identify readthrough of stop codons
Genome_build: Hg38
Supplementary_files_format_and_content: count_matrix.txt (Matrix table with raw gene counts for every gene and every sample).  RPF.periodicity.zip (metagene analysis of reads distribution to identify readthrough of stop codons).

source_name: HeLa

growth_protocol: Cell lines were grown to a maximum of 50% confluence in a synthetic medium, before adding the drug

extract_protocol:
the extraction is performed as previously published Baudin-Baillieu A et al. Methods Mol. Biol. 2016, 1361:105-24. briefly: Pellet cells by centrifugation at 4 °C, 4000×g for 10 min. resuspend pellet in 10 ml cold Lysis Buffer. Pulverize Cells by adding glass beads and vortexing the mix- ture for 10 min at 4 °C. Remove cells debris by centrifugation at 4 °C, 5000×g for 5 min and transfer the supernatant to chilled 1.5 ml microfuge tubes on ice. The supernatant is clarified by centrifugation at 4 °C, 15,000×g for 15 min. Recover supernatant.
Libraries were prepared according to Illumina's instructions accompanying the TruSeq Small RNA preparation kits
RNAseq

treatment_protocol: G418 is added to the medium at 712µM, TLN68 is added to the medium at 80 µM

tag: cell line

value: HeLa

tag: treatment


title: Hela TLN68 rep 1

description:
polysome extraction
HeLaTln68.1


title: Hela TLN68 rep 2

description:
polysome extraction
HeLaTln68.2


title: hPSC progenitor cardiomyocytes at Day 4 of differentiation (D4_C05)_gene


title: hPSC early cardiomyocytes at Day 8 of differentiation (D8_E05)_gene


title: hPSC progenitor cardiomyocytes at Day 4 of differentiation (D4_C07)_gene


title: hPSC cardiomyocytes at Day 15 of differentiation (D15_F05)_gene


title: hPSC cardiomyocytes at Day 15 of differentiation (D15_F07)_gene


title: hPSC cardiomyocytes at Day 30 of differentiation (D30_G05)_gene


title: hPSC progenitor cardiomyocytes at Day 2 of differentiation (D2_B05)_gene


title: hPSC early cardiomyocytes at Day 6 of differentiation (D6_D05)_gene


title: Hela G418 rep 1

description:
polysome extraction
HeLaG418.1


title: astro_NIL_donor3


title: Hela DMSO rep 3

description:
polysome extraction
HeLa.3

value: DMSO


title: Hela DMSO rep 2

description:
polysome extraction
HeLa.2


title: astro_IL-1b + IL-27_donor2


title: Hela DMSO rep 1

description:
polysome extraction
HeLa.1


title: Hela G418 rep 3

description:
polysome extraction
HeLaG418.3


title: hPSCs at Day 0 of differentiation (D0_A07)_gene

source_name: hPSCs

value: hPSCs


title: R539T_UNT_01

city: Accra

first: Kwesi

middle: Zandoh

last: Tandoh

state: Greater Accra Region

address: WACCBIP, Volta Road, University Of Ghana

department: Department of Biochemistry, Cell and Molecular Biology

country: Ghana

institute: West African Centre for Cell Biology of Infectious Diseases, University of Ghana

description: Aretemisinin resistant transgenic parasite lines (C580R and R539T) were generated using CRISPR/Cas9 genome editing of the PfK13 locus in a DD2 parental line. The ring-stage survival assay was used to establish artemisinin sensitivity phenotype

data_processing:
Illumina NextseqTM 500 software was used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to P. falciparum ASM276v2 reference transcriptome using BWA, version 0.7.17-r1188 with parameters bwa mem -t 8
Reads that mapped equally well (mappability of dataset was 25) to multiple locations were discarded. Mapping and generation of count tables was done using the MapAndGo script (https://github.com/anna-alemany/transcriptomics/tree/master/mapandgo)
Assembly: Plasmodium falciparum ASM276v2 reference transcriptome
Supplementary files format and content: Matrix table with raw transcript counts for every gene transcript and every sample

organism: Plasmodium falciparum

source_name: In vitro cultured cells

growth_protocol: P. falciparum parasites were cultured at 5% hematocrit in human O- red blood cells (RBCs) and culture media comprising RPMI 1640 (Thermo Fisher Scientific) supplemented with 0.5% (w/v) Albumax II (Invitrogen), 50 mg/L hypoxanthine, 0.225% NaHCO3, 25 mM HEPES, and 10 mg/L gentamycin. Parasites were cultured at 37oC in 5% O2, 5% CO2, and 90% N2

extract_protocol:
After 6 hours of DHA or DMSO treatment, we centrifuged the parasite culture mix at 2500rpm for five minutes to harvest the infected erythrocytes. Subsequently, parasites were liberated from host erythrocytes by treatment with 0.015 % (w/v) saponin for five minutes at room temperature. After that, liberated parasites were washed twice with 1x PBS (137mM NaCl, 8mM KCl, 10mM Na2HPO4, 2mM KH2PO4, pH 7.4) to remove any host cell debris and residual drug. The parasites were then pelleted and stored at -80oC in an Eppendorf tube (1.5ml) containing 1mL Trizol reagent (Fisher Scientific, Hampton, NH) before RNA extraction.
Sequencing was performed at Single Cell Discoveries, a sequencing service provider located in the Netherlands using an adapted version of the CEL-seq protocol. Total ribonucleic acid (RNA) was extracted from TRIzol-preserved parasites after thawing at room temperature using the standard TRIzol (Invitrogen) protocol and used for library preparation and sequencing. The extracted RNA was dissolved in 100µl RNase-free water and DNA removed by DNase I digestion, after which the purified DNA was eluted into 50µl RNase-free water. Qubit High Sensitivity RNA assay (Thermo Fisher Scientific) was used to quantify the purified RNA, and RNA integrity was determined on an Agilent Bioanalyzer (Agilent Genomics, Waldbronn, Germany). Messenger RNA (mRNA) was processed as described previously, following an adapted version of the single-cell mRNA sequencing protocol of CEL-Seq (Hashimshony et al., 2012, Simmini et al., 2014). In brief, samples were barcoded with CEL-seq primers during reverse transcription and pooled after second strand synthesis. The resulting complementary DNA (cDNA) was amplified with an overnight in vitro transcription reaction. From this amplified RNA, sequencing libraries were prepared with Illumina Truseq small RNA primers. The DNA library was paired end sequenced on an Illumina NextseqTM 500, high output, with a 1x75 bp Illumina kit (R1: 26 cycles, index read: 6 cycles, R2: 60 cycles). Read 1 was used to identify the Illumina library index and CEL-Seq sample barcode. Read 2 was aligned to the Plasmodium falciparum ASM276v2 reference transcriptome using BWA, version 0.7.17-r1188 (Li and Durbin, 2009).

treatment_protocol: Once parasitemia reached 3-5% parasitemia, unsynchronised parasite cultures were exposed to 700nM DHA or 0.1% (v/v) DMSO solvent control for six hours. Parallel culture plates were also left untreated.

tag: strain

tag: pfk13 allele

tag: artemisinin sensitivity phenotype

value: resistant

value: untreated

tag: experimental batch


title: R539T_UNT_02


title: R539T_DHA_04

value: 700nM DHA added to unsynchronised parasites for 6 hours


title: R539T_DHA_02


title: R539T_DMSO_01

value: 0.1% DMSO vehicle added to unsynchronised parasites for 6 hours


title: R539T_DMSO_02


title: Hela G418 rep 2

description:
polysome extraction
HeLaG418.2


title: hPSCs at Day 0 of differentiation (D0_A05)_gene


title: DD2_DMSO_03

value: wild-type

value: sensitive


title: R539T_DHA_01


title: DD2_DMSO_02


title: DD2_UNT_02


title: R539T_DMSO_03


title: C580R_DMSO_03


title: DD2_DHA_01


title: C580R_DMSO_02


title: C580R_UNT_01


title: DD2_DHA_04


title: R539T_DHA_03


title: C580R_DMSO_01


title: DD2_DHA_03


title: C580R_DHA_01


title: C580R_DHA_04


title: C580R_DHA_03


title: DD2_UNT_01


title: DD2_DHA_02


title: C580R_DHA_02


title: C580R_UNT_02


title: LiverC_Sheep_input

city: Beijing

first: Siqian

last: Chen

address: 2rd, Yuanmingyuan West Road

department: College of Animal Science and Technology

country: China

institute: China Agricultural University

library_source: genomic

data_processing:
We used Trim Galore v0.4.0 and FastQC v0.11.2 software to trim the raw reads and obtain sequence quality reports.
The clean reads were mapping to the corresponding reference genome of each species using BWA-MEM software v0.7.17  with the default parameters,uplicated alignment reads were removed using the Picard Tools v2.25.0 with the parameter “REMOVE_DUPLICATES = true”.
To create ChIP-seq coverage plots, the locations of the mapped ChIP-seq reads were extended to 150 bp to represent sequenced fragments, renormalized (to reads per million, rpm) and reformatted in the bigWig file format.
narrow peaks using MACS2 v2.1.1 with options “-q 0.01”.
bigWig files were generated using deepTools v3.1.1 with the follow parameters “--normalizeUsing CPM”.
Assembly: ARS-UCD1.2, Oar_rambouillet_v1.0, ARS1
Supplementary files format and content: bigWig, narrowPeak (except for Input sample)

molecule: genomic DNA

organism: Ovis aries

source_name: liver

extract_protocol: none provided by the submitter

value: liver

tag: chip antibody


title: LiverA_Sheep_input


title: DD2_DMSO_01


title: LiverB_Sheep_H3K4me3

value: H3K4me3 (Abcam ab85850)


title: LiverA_Sheep_H3K4me3


title: LiverB_Sheep_H3K27ac

value: H3K27ac (Abcam ab4729)


title: LiverB_Sheep_input


title: LiverA_Sheep_H3K27ac


title: LiverC_Sheep_H3K27ac


title: LiverC_Sheep_H3K4me3


title: Liver - CTRL_Fed_ctrl - Rep1

city: Toulouse

first: Hervé

last: Guillou

address: 180 Chemin de Tournefeuille

department: ToxAlim

institute: INRAE

hyb_protocol: 600 ng of Cy3-labelled cRNA (specific activity >6 pmol Cy3/µg cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 25 µl containing 10x Agilent fragmentation buffer and 25x Agilent blocking agent following the manufacturer's instructions (Agilent Technologies, Santa Clara, CA). On completion of the fragmentation reaction, 25 µl of 2x Agilent hybridization buffer was added to the fragmentation mixture and hybridized to SurePrint G3 Mouse GE v2 microarray (8X60K, Design 074809  enclosed in Agilent SureHyb-enabled hybridization chambers for 17 hours at 65°C in a rotating Agilent hybridization oven. After hybridization, microarrays were washed sequentially in Wash buffer 1 (Agilent Technologies, 1 min) and Wash buffer 2 (Agilent Technologies, 37°C, 1 min).

scan_protocol: Slides were scanned immediately after washing on a Agilent G2505C Microarray Scanner with Agilent Scan Control A.8.5.1 software

data_processing: The scanned images were analyzed with Feature Extraction Software 10.10.1.1 (Agilent Technologies, Santa Clara, CA) using default parameters (protocol GE1_1010_Sep10 and Grid: 074809_D_F_20150624). All subsequent data analyses were done under R (www.r-project.org) using packages of Bioconductor (www.bioconductor.org). Raw data (median of pixels intensity) were imported into R using the read.maimages function from the limma package with the following weight function (assigning a weight of 1 or 0 to each spot): myfunw<-function(x) {okType<-x$ControlType==0; okFoundGreen<-x$gIsFound==1; okPos=x$gIsPosAndSignif==1; okWellAbove<- x$gIsWellAboveBG==1; as.numeric(okType & okFoundGreen & okPos & okWellAbove);} We selected the spots with a minimal weight of 1 for 29 out of 36 microarrays or with a minimal weight of 4 per group from at least one experimental group. At this step, 39558 spots out of 62976 were selected.  The mean signal of the 19 first samples and 17 last ones were substracted to individuals signals to correct the batch effect of the 2 serials (characteristics:WashBatch) observed during the microarray washing procedure. Data were then stored in an ExpressionSet object and normalized by the qsmooth method using the qsmooth function from the qsmooth R library. Replicated probes on the array (identical ProbeName) were resolved by taking the median normalized signal of each set of replicated probes. The resulting matrix has 36898 rows each corresponding to a unique ProbeName (provided as data Matrix).

organism: Mus musculus

source_name: Liver

label_protocol: For each sample, Cyanine-3 (Cy3) labeled cRNA was prepared from 200 ng of total RNA using the One-Color Quick Amp Labeling kit (Agilent Technologies, Santa Clara, CA) according to the manufacturer's instructions, followed by Agencourt RNAClean XP (Agencourt Bioscience Corporation, Beverly, Massachusetts) purification. Dye incorporation and cRNA yield were checked using Dropsense™ 96 UV/VIS droplet reader (Trinean, Belgium).

growth_protocol: Mice were fed ad libitum (fed) or fasted for hours (fasted) . For treatment with beta3 agonist receptor agonist:  CL316243 (3 mg/kg body weight; Sigma Aldrich) in vehicle (0.5% carboxymethyl cellulose in sterilized water) was given by gavage at ZT10. All mice were sacrificed at ZT16.

extract_protocol: Total cellular RNA was extracted from liver with TRIzol reagent (Invitrogen).

treatment_protocol: All mice were housed at 21-23°C on a 12-hour light (ZT0-ZT12) 12-hour dark (ZT12-ZT24) cycle and had free access to the standard rodent diet (Safe 04 U8220G10R) and tap water. ZT stands for Zeitgeber time; ZT0 is defined as the time when the lights are turned on. All mice used in this study were males and were sacrificed at ZT16.

tag: genotype

value: CTRL

tag: nutritional status

value: Fed

value: ctrl

tag: gender

value: Male

value: Liver

tag: experimentation

tag: washbatch


title: Liver - CTRL_Fasted_ctrl - Rep4

value: Fasted


title: Liver - CTRL_Fed_beta3 - Rep3


title: Liver - CTRL_Fed_beta3 - Rep6


title: Liver - AAKO_Fasted_ctrl - Rep5

value: AAKO


title: Liver - AAKO_Fasted_ctrl - Rep4


title: Liver - AAKO_Fasted_ctrl - Rep1


title: Liver - AAKO_Fed_ctrl - Rep2


title: Liver - AAKO_Fed_beta3 - Rep5


title: Liver - AAKO_Fed_beta3 - Rep2


title: Liver - CTRL_Fasted_ctrl - Rep1


title: Liver - AAKO_Fed_beta3 - Rep3


title: Liver - CTRL_Fasted_ctrl - Rep2


title: Liver - CTRL_Fed_beta3 - Rep4


title: Liver - AAKO_Fed_ctrl - Rep6


title: Liver - AAKO_Fed_ctrl - Rep5


title: Liver - CTRL_Fed_beta3 - Rep1


title: Liver - AAKO_Fed_beta3 - Rep4


title: Liver - CTRL_Fed_ctrl - Rep3


title: Liver - CTRL_Fed_ctrl - Rep5


title: Liver - CTRL_Fed_ctrl - Rep6


title: Liver - CTRL_Fed_ctrl - Rep4


title: Liver - AAKO_Fasted_ctrl - Rep2


title: Liver - AAKO_Fed_beta3 - Rep1


title: Liver - AAKO_Fasted_ctrl - Rep6


title: Liver - CTRL_Fasted_ctrl - Rep5


title: Liver - AAKO_Fed_ctrl - Rep4


title: Liver - CTRL_Fed_beta3 - Rep2


title: Liver - AAKO_Fed_ctrl - Rep1


title: Liver - CTRL_Fasted_ctrl - Rep6


title: Liver - AAKO_Fed_beta3 - Rep6


title: Liver - AAKO_Fasted_ctrl - Rep3


title: Liver-LKO_Vehicle-Rep2

data_processing: The scanned images were analyzed with Feature Extraction Software 10.10.1.1 (Agilent Technologies, Santa Clara, CA) using default parameters (protocol GE1_1010_Sep10 and Grid: 074809_D_F_20150624). All subsequent data analyses were done under R (www.r-project.org) using packages of Bioconductor (www.bioconductor.org). Raw data (median of pixels intensity) were imported into R using the read.maimages function from the limma package with the following weight function (assigning a weight of 1 or 0 to each spot): myfunw<-function(x) {okType<-x$ControlType==0; okFoundGreen<-x$gIsFound==1; okPos=x$gIsPosAndSignif==1; okWellAbove<- x$gIsWellAboveBG==1; as.numeric(okType & okFoundGreen & okPos & okWellAbove);} We selected the spots with a minimal weight of 1 for 20 out of 24 microarrays or with a minimal weight of 4 per group from at least one experimental group. At this step, 33998 spots out of 62976 were selected. Data were then stored in an ExpressionSet object and normalized by the quantile method using the normalize.quantiles function from the preprocessCore R library. Replicated probes on the array (identical ProbeName) were resolved by taking the median normalized signal of each set of replicated probes. The resulting matrix has 31367 rows each corresponding to a unique ProbeName (provided as data Matrix).

growth_protocol: Mice were fed ad libitum a standard rodent diet. For treatment with beta3 agonist receptor agonist:  CL316243 (3 mg/kg body weight; Sigma Aldrich) in vehicle (0.5% carboxymethyl cellulose in sterilized water) was given by gavage at ZT10. All mice were sacrificed at ZT16.

value: LKO

value: Vehicle


title: Liver-LWT_Beta3-Rep3

value: LWT


title: Liver-LKO_Beta3-Rep6


title: Liver - AAKO_Fed_ctrl - Rep3


title: Liver-LKO_Beta3-Rep4


title: Liver - CTRL_Fasted_ctrl - Rep3


title: Liver - CTRL_Fed_ctrl - Rep2


title: Liver-LWT_Vehicle-Rep4


title: Liver-LWT_Vehicle-Rep5


title: Liver-LWT_Vehicle-Rep1


title: hOB

city: Cheonansi

first: Ji-Young

last: Yoon

state: Chungnam

address: Dandaero 119

department: Nanbiomedical science

country: South Korea

institute: Dankook University

description: F

data_processing:
Illumina Casava1.8 software used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence(using fastx_trimmer), then mapped to hg19 whole genome using Tophat
FPKM calculation using Cufflink
Assembly: hg19
Supplementary files format and content: tab-delimited text files include FPKM values for each Sample

source_name: Osteoblasts

growth_protocol: HDFs were cultured in growth medium (DMEM-HG, 10% FBS, 1% Penicillin-Streptomycin, 1% MEM non-essential amino acids solution, 2 mM Glutamax, and 0.1 mM 2- mercaptoethanol) and the medium was changed every 2-3 days. hOBs (human osteoblasts; C-127220, PromoCell) were cultured  in an osteoblast growth medium (C-27001) supplemented with growth medium SupplementMix (C-39615).

extract_protocol:
For total mRNA bulk sequencing, total RNA was isolated from cells of four groups [aHDF, ciOG, ciOG(M7p) and hOB] using RibospinTM according to manufacturer's instruction.
RNA libraries were prepared for sequencing using the NEBNext Ultra II Directional RNA-Seq Kit standard protocols.

treatment_protocol: ciOG : HDFs were seeded at -1 day in 24 well plates at a density of 60,000 cells/well and cultured in GM. The medium was replaced at 0, 2, and 4 days into an osteogenic medium containing low concentration of FBS (DMEM-HG, 2% FBS, 1% P/S, 50 mg/ml ascorbic acid, 10 mM b-glycerophosphate, and 10 nM dexamethasone) with three chemicals (R, F, P) for 7 days. ciOG(M7p) : The ciOG were then matured to osteoblasts in osteogenic medium with 10% FBS in the presence of phenamil for 7 days. Osteoblasts were cultured in growth medium.

value: Osteoblasts

value: WT

value: Growth medium


title: Liver-LWT_Beta3-Rep1


title: Liver-LWT_Beta3-Rep2


title: Liver-LKO_Beta3-Rep2


title: Liver - CTRL_Fed_beta3 - Rep5


title: Liver-LWT_Vehicle-Rep2


title: Liver-LKO_Vehicle-Rep3


title: Liver-LKO_Beta3-Rep1


title: Liver-LWT_Beta3-Rep5


title: Liver-LKO_Vehicle-Rep1


title: Liver-LKO_Vehicle-Rep4


title: Liver-LKO_Beta3-Rep5


title: Liver-LKO_Vehicle-Rep6


title: Liver-LKO_Vehicle-Rep5


title: Liver-LWT_Beta3-Rep6


title: Liver-LKO_Beta3-Rep3


title: Liver-LWT_Beta3-Rep4


title: Liver-LWT_Vehicle-Rep3


title: ciOG (M7p)

description: E

source_name: Dermal fibroblasts

value: Dermal fibroblasts

value: ciOG(M7p) followed by treatment phenamil under osteogenic medium per 3 days further 7 days from 7th days


title: Fib

description: A


title: ciOG

description: B

value: 3 chemicals (Repsox, Forskolin, Phenamil) treatment at 0, 2, 4 days in the osteogenic medium under low concentration of FBS (2%) for 7 days in fibroblast seeded in tissue culture plate


title: Liver-LWT_Vehicle-Rep6


title: IGF2BP2_input_1

city: Wuhan

first: Dong

state: Hubei

address: 388 GaoXin 2nd Road, East Lake Hi-Tech Development Zone

department: Center for Genome Analysis

institute: ABLife, Inc.

data_processing:
Illumina bcl2fastq software used for basecalling. Raw reads containing more than 2-N bases were first discarded. Then adaptors and low-quality bases were trimmed from raw sequencing reads using FASTX-Toolkit (Version 0.0.13). The short reads less than 16nt were also dropped.
3' adapter (end1:AGATCGGAAGAGC;end2:AGATCGGAAGAGC) and low quality bases trimmed using FASTX-Toolkit (Version 0.0.13). the short reads less than 16nt were also dropped.
Reads were mapped using tophat2 --read-edit-dist 4 -N 4 --b2-N 1 -a 8 -m 0 -g 2 -p 12 --microexon-search --no-coverage-search --report-secondary-alignments. Uniquely mapped reads were remained. One more reads with the same start and end position, only one is considered.
After reads were aligned onto the genome, we analysed the unique reads binding regions of GENE_NAME on genome using “ABLIRC” strategy.
Assembly: GRCh38
Supplementary files format and content: tab-delimited text files include peak information for each group.

source_name: Jurkat

growth_protocol: Jurkat cells were grown at 37℃, 5% CO2 in RPMI-1640 medium (Gibco, USA) supplemented with 10% fetal bovine serum (FBS, Gibco, USA) and 1% penicillin/streptomycin, respectively.

extract_protocol:
The IGF2BP2-bound RNA was isolated from the immunoprecipitation of anti-IGF2BP2 using Trizol (Invitrogen).
Complementary DNA (cDNA) libraries were prepared with the KAPA RNA Hyper Prep Kit (KAPA, KK8541) according to the manufacturer’s procedure and high-throughput sequencing of the cDNA libraries was performed on an Illumina Xtenplatform for 150 bp paired-end sequencing.

value: Jurkat

value: leukemic cell line


title: IGF2BP2_IP_2

tag: antibody


title: IGF2BP2_input_2


title: Bel-7404 cells, N2, Day0

city: Shanghai

first: Yanfeng

last: Xu

address: No.274, Zhijiang Middle Road

institute: Shanghai Hospital of Traditional Chinese Medicine

data_processing:
Trimmomatic ver. 0.36,  Parameters: LEADING:3 TRAILING:3 ILLUMINACLIP:TruSeq3-PE-2.fa:2:30:10:8:true SLIDINGWINDOW:4:15 MINLEN:50
RseQC ver. 2.6.4
fastqc ver. 0.11.5
hisat2 ver. 2.2.1.0, Parameters :--rna-strandness rf --fr
stringtie2 ver. 1.3.3b, Parameters:--rf
Assembly: GRCh38
Supplementary files format and content: tab-delimited text files include FPKM  values for all Samples

growth_protocol: Bel-7402 and Bel-7404 cells were maintained in DMEM supplemented with 10% fetal bovine serum (FBS) and antibiotics in an incubator at 37°C and 5% CO2

extract_protocol:
Total RNA was extracted using TRIzol reagent.
RNA library for RNA-seq were prepared using  mRNA-Seq Library Prep Kit following manufacture's protocols.

treatment_protocol: Bel-7402 and Bel-7404 cells were treated with corosolic acid for 24 hours (designated as day 0)

value: liver cancer cells

value: DMSO treatment


title: Bel-7404 cells, N3, Day0


title: Bel-7402 cells, N2, Day0


title: Bel-7404 cells, C2, Day0

value: Corosolic acid treatment


title: Bel-7402 cells, N3, Day0


title: Bel-7404 cells, N1, Day0


title: Bel-7402 cells, C2, Day0


title: Bel-7402 cells, C3, Day0


title: Bel-7402 cells, C1, Day0


title: Bel-7404 cells, C3, Day0


title: CH12_LAM-HTGTS_C23_rep3

city: Vienna

first: Tobias

last: Neumann

address: Campus-Vienna-Biocenter 1

country: Austria

institute: IMP

description: LAM-HTGTS

data_processing:
Library strategy: LAM-HTGTS
LAM-HTGTS
Base-calling and demultiplexing:
Raw nanopore fast5 files were basecalled using the Guppy basecaller from Oxford Nanopore Technologies (ONT) 3.6.0+98ff765.
Resulting reads were demultiplexed by detecting barcodes with a custom fork of qcat (https://github.com/nanoporetech/qcat) and splitting reads into chunks at every detected barcode site, assigning the resulting subreads to the majority vote of the detected barcode set.
Only reads >= 50 bp were used to remove linker-linker pairs.
Alignment and downsampling:
Reads were aligned using bwa mem v0.7.17-r1188 and primary alignments were retained with samtools -F 0x0100.
Reads mapping to the bait regions (Myc chr15:61794274-61844667; Irf2bp2 chr8:129089061-129140470) were extracted.
Downsampling factors for matched replicates between conditions were calculated and downsampling was performed using picardTools MarkDuplicates (https://broadinstitute.github.io/picard/) v2.18.27.
Translocation and hotspot calling:
The pysam (https://github.com/pysam-developers/pysam)  module was used to extract reads from the bait regions and translocation breakpoints were extracted from all supplementary alignments in the SA bam tag outside the bait region.
Translocations also appearing the respective control samples were subtracted for the final translocation sets.
Hotspots on the resulting translocation bed files were called using hot_scan  (Version from October 17, 2013) with window width 10kb, significance level 0.05 and unadjusted p-values.
Genome_build: NCBI mm9
Supplementary_files_format_and_content: Tab-delimited tables with translocation quantifications and log2-foldchanges on confident hotspot sets.

growth_protocol: CH12 cells cultured in complete RPMI medium wit IL4/CD40/TGF beta stimulation.

extract_protocol:
Genomic DNA was extracted and c-Myc/Irf2bp2 genomic region  was biotin isolated and PCR enriched
Libraries were prepared following the nanopore library preparation protocol Ligation Sequencing Kit SQK-LSK109

treatment_protocol: Cells were infected with pMXAIDER vector and electroporateed with Cas9-sgRNA-Myc/Cas9-sgRNA-Irf2bp2


title: CH12_LAM-HTGTS_C13_rep1

description: LAM-HTGTS


title: CH12_LAM-HTGTS_C23_rep2

description: LAM-HTGTS


title: CH12_LAM-HTGTS_C13_rep3

description: LAM-HTGTS


title: CH12_LAM-HTGTS_C23_ctrl

description: LAM-HTGTS


title: CH12_LAM-HTGTS_C23_rep1

description: LAM-HTGTS


title: Bel-7402 cells, N1, Day0


title: CH12_LAM-HTGTS_WT_rep1

description: LAM-HTGTS


title: CH12_LAM-HTGTS_WT_rep3

description: LAM-HTGTS


title: CH12_LAM-HTGTS_C13_rep2

description: LAM-HTGTS


title: CH12_LAM-HTGTS_shMcm_rep3

description: LAM-HTGTS

value: shMcm


title: CH12_LAM-HTGTS_shMcm_rep2

description: LAM-HTGTS


title: CH12_LAM-HTGTS_shLacZ_rep3

description: LAM-HTGTS

value: shLacZ


title: CH12_LAM-HTGTS_shMcm_rep1

description: LAM-HTGTS


title: CH12_LAM-HTGTS_shLacZ_rep1

description: LAM-HTGTS


title: CH12_LAM-HTGTS_shLacZ_rep2

description: LAM-HTGTS


title: CH12_LAM-HTGTS_shMcm_unstimulated

description: LAM-HTGTS


title: Bel-7404 cells, C1, Day0


title: CH12_LAM-HTGTS_shLacZ_unstimulated

description: LAM-HTGTS


title: CH12_LAM-HTGTS_WT_rep2

description: LAM-HTGTS


title: Ctrl in vitro

city: Seattle

first: Thomas

last: Reh

state: Washington

address: 1959 NE Pacific Street, UW School of Medicine, Seattle, WA 98195

department: Department of Neurobiology and Biophysics

country: USA

institute: University of Washington

library_source: transcriptomic single cell

data_processing:
read demutliplexing and intensity to fastq conversion done using cellranger mkfastq or cellranger-atac mkfastq
(RNA samples only): Gene by cell matricies were created using cellranger count
(ATAC samples only): Reads were alligned, peaks were called, and fragment files and peak x cell matricies were created using cellranger-atac count
(ATAC samples only): Peaks were re-called using Macs2 (through Signac) and new peak x cell matricies were created using Signac::FeatureMatrix()
Downstream processing was preformed in R using Seurat, Signac, ChromVar, and Monocle 3
Assembly: mm10
Supplementary files format and content: filtered_feature_bc_matrix.tar.gz files (gene x cell matricies from 10x output), filtered_peak_bc_matrix.tar.gz files (peak x cell matricies from 10x output), fragments.tsv.gz (10x Tn5 fragment files), Macs2_TFIDF.mtx files (cells x Macs2 peaks), metadata.csv.gz (metadata for samples)

molecule: polyA RNA

source_name: control in vitro mouse muller glia

extract_protocol:
10x Single Cell 3' v3
Tissue was dissociated with papaine and DNase (Worthington), followed by FACS.  Cultured cells were dissociated with Accutase (Sigma).  All dissociated cells spun at 300 g (4C), then resuspended in culture medium at 1000 cells/uL.
10x Chromium Single Cell 3' V3.1 and 10x ATAC

tag: culture

value: in vitro

tag: cellranger version


title: IPA_scATAC

source_name: IPA reprogrammed mouse glia

extract_protocol:
10x ATAC
Tissue was dissociated with papaine and DNase (Worthington), followed by FACS.  Cultured cells were dissociated with Accutase (Sigma).  All dissociated cells spun at 300 g (4C), then resuspended in culture medium at 1000 cells/uL.
10x Chromium Single Cell 3' V3.1 and 10x ATAC

value: in vivo


title: IPA in vitro

source_name: IPA treated cells in vitro


title: Ascl1 in vitro

source_name: Ascl1 treated cells in vitro


title: E14 scATAC

source_name: E14 mouse retina


title: Hippocampus, baseline, Phf21b+/+ [WT7]

city: SYRACUSE

first: Mira

last: Krendel

state: New York

address: 505 Irving Ave

institute: Upstate Medical University

data_processing:
RNA-seq data analysis pipeline
Sequence reads were trimmed for adaptor sequence and remove low-quality sequence/reads using Trimmomatic (v0.39)
Trimmed sequence reads were mapped to GENCODE GRCm38 release M24 Mouse reference genome by using STAR aligner (v2.7.3a)
Reads mapped to genes were summarized by the featureCounts program (57) in subread v1.6.4
Genes were filtered by CPM ≥ 1 in at least 2 samples, and data were normalized to effective library size by edgeR
Assembly: GENCODE GRCm38 release M24 Mouse reference genome
Supplementary files format and content: tab-delimited text files include normalized log2CPM values for each Sample

source_name: hippocampus

extract_protocol:
RNA was harvested using RNeasy mini kit (Qiagen). 500ng total RNA was used for the construction of sequencing libraries.
RNA libraries for RNA-seq were prepared using TruSeq Total RNA Library Prep Ribo-Zero Gold Kit (Illumina) following manufacturer's protocols.

tag: tissue

value: hippocampus

value: Phf21b+/+, WT


title: IPA 6 week in vivo

source_name: IPA treated cells 6 weeks in vivo


title: Hippocampus, baseline, Phf21b+/+ [WT5]


title: Ascl1_scATAC

source_name: Ascl1 reprogrammed mouse glia


title: Hippocampus, baseline, Phf21bΔ4/Δ4 [KO6]


title: Hippocampus, baseline, Phf21b+/+ [WT8]


title: Hippocampus, baseline, Phf21bΔ4/Δ4 [KO2]


title: Hippocampus, baseline, Phf21bΔ4/Δ4 [KO3]


title: IPA 3 week in vivo

source_name: IPA treated cells 3 weeks in vivo


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell220

city: Boston

first: Joana

middle: Graca

last: Marques

state: MA

address: 360 Longwood Avenue

institute: Dana-Farber Cancer Institute

description:
SMART-seq2
SM4C1r5-P3-C04

data_processing:
Raw sequencing reads were aligned by bowtie, and gene counts were quantified using RSEM as transcript-per-million, or TPM.
Expression levels were calculated as Ei,j = log2(TPMi,j/10 + 1) for gene i in sample j. TPM values were divided by 10 for better approximation of the estimated complexity of single-cell libraries.
We filtered out low quality cells with less than 2,500 detected genes or an average housekeeping expression level below 2.5 and removed low expressed genes with TPM greater than 16 in less than 5 cells.
We defined relative expression as centered expression levels, Eri,j = Ei,j − average[Ei,1...n] for the remaining cells and genes.
Assembly: hg19
Supplementary files format and content: TPM values for each gene in each cell and in every condition. Control AAVS1 (CTRL) and SMARCA4 knockout (SM4KO) TPM data are gathered in one csv file per replicate.

growth_protocol: BT869 cells were grown as neurospheres in tumor stem media base supplemented with B27 minus vitamin A (Thermo Fisher Scientific), human growth factors (EGF, FGF, PDGF-AA, PDGF-BB [Shenandoah Biotechnology]) and heparin (Stemcell Technologies) in ultra-low attachment flasks  in humidified atmosphere with 5% CO2 at 37C.

extract_protocol:
Live cells were FACS sorted into 96-well plates containing TCL lysis buffer (Qiagen) and plates were frozen prior to processing for Smart-seq2
SMART-seq2

tag: cell type

value: SMARCA4 knockout

value: nucleofection

tag: time

value: 4 days


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell219

description:
SMART-seq2
SM4C1r5-P3-C03

tag: cell line

tag: treatment


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell208

description:
SMART-seq2
SM4C1r5-P3-B04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell218

description:
SMART-seq2
SM4C1r5-P3-C02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell205

description:
SMART-seq2
SM4C1r5-P3-B01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell217

description:
SMART-seq2
SM4C1r5-P3-C01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell213

description:
SMART-seq2
SM4C1r5-P3-B09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell210

description:
SMART-seq2
SM4C1r5-P3-B06


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell207

description:
SMART-seq2
SM4C1r5-P3-B03


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell215

description:
SMART-seq2
SM4C1r5-P3-B11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell206

description:
SMART-seq2
SM4C1r5-P3-B02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell212

description:
SMART-seq2
SM4C1r5-P3-B08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell211

description:
SMART-seq2
SM4C1r5-P3-B07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell209

description:
SMART-seq2
SM4C1r5-P3-B05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell204

description:
SMART-seq2
SM4C1r5-P3-A12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell203

description:
SMART-seq2
SM4C1r5-P3-A11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell202

description:
SMART-seq2
SM4C1r5-P3-A10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell216

description:
SMART-seq2
SM4C1r5-P3-B12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell214

description:
SMART-seq2
SM4C1r5-P3-B10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell201

description:
SMART-seq2
SM4C1r5-P3-A09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell200

description:
SMART-seq2
SM4C1r5-P3-A08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell199

description:
SMART-seq2
SM4C1r5-P3-A07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell198

description:
SMART-seq2
SM4C1r5-P3-A06


title: IGF2BP2_IP_1


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell196

description:
SMART-seq2
SM4C1r5-P3-A04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell197

description:
SMART-seq2
SM4C1r5-P3-A05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell194

description:
SMART-seq2
SM4C1r5-P3-A02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell195

description:
SMART-seq2
SM4C1r5-P3-A03


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell193

description:
SMART-seq2
SM4C1r5-P3-A01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell192

description:
SMART-seq2
SM4C1r5-P2-H12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell191

description:
SMART-seq2
SM4C1r5-P2-H11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell189

description:
SMART-seq2
SM4C1r5-P2-H09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell187

description:
SMART-seq2
SM4C1r5-P2-H07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell184

description:
SMART-seq2
SM4C1r5-P2-H04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell186

description:
SMART-seq2
SM4C1r5-P2-H06


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell180

description:
SMART-seq2
SM4C1r5-P2-G12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell181

description:
SMART-seq2
SM4C1r5-P2-H01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell182

description:
SMART-seq2
SM4C1r5-P2-H02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell178

description:
SMART-seq2
SM4C1r5-P2-G10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell175

description:
SMART-seq2
SM4C1r5-P2-G07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell166

description:
SMART-seq2
SM4C1r5-P2-F10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell190

description:
SMART-seq2
SM4C1r5-P2-H10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell172

description:
SMART-seq2
SM4C1r5-P2-G04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell167

description:
SMART-seq2
SM4C1r5-P2-F11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell168

description:
SMART-seq2
SM4C1r5-P2-F12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell174

description:
SMART-seq2
SM4C1r5-P2-G06


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell164

description:
SMART-seq2
SM4C1r5-P2-F08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell169

description:
SMART-seq2
SM4C1r5-P2-G01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell188

description:
SMART-seq2
SM4C1r5-P2-H08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell185

description:
SMART-seq2
SM4C1r5-P2-H05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell179

description:
SMART-seq2
SM4C1r5-P2-G11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell170

description:
SMART-seq2
SM4C1r5-P2-G02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell183

description:
SMART-seq2
SM4C1r5-P2-H03


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell176

description:
SMART-seq2
SM4C1r5-P2-G08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell177

description:
SMART-seq2
SM4C1r5-P2-G09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell163

description:
SMART-seq2
SM4C1r5-P2-F07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell162

description:
SMART-seq2
SM4C1r5-P2-F06


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell171

description:
SMART-seq2
SM4C1r5-P2-G03


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell173

description:
SMART-seq2
SM4C1r5-P2-G05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell165

description:
SMART-seq2
SM4C1r5-P2-F09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell157

description:
SMART-seq2
SM4C1r5-P2-F01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell158

description:
SMART-seq2
SM4C1r5-P2-F02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell159

description:
SMART-seq2
SM4C1r5-P2-F03


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell156

description:
SMART-seq2
SM4C1r5-P2-E12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell160

description:
SMART-seq2
SM4C1r5-P2-F04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell152

description:
SMART-seq2
SM4C1r5-P2-E08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell153

description:
SMART-seq2
SM4C1r5-P2-E09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell155

description:
SMART-seq2
SM4C1r5-P2-E11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell150

description:
SMART-seq2
SM4C1r5-P2-E06


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell142

description:
SMART-seq2
SM4C1r5-P2-D10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell144

description:
SMART-seq2
SM4C1r5-P2-D12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell143

description:
SMART-seq2
SM4C1r5-P2-D11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell147

description:
SMART-seq2
SM4C1r5-P2-E03


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell145

description:
SMART-seq2
SM4C1r5-P2-E01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell149

description:
SMART-seq2
SM4C1r5-P2-E05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell151

description:
SMART-seq2
SM4C1r5-P2-E07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell146

description:
SMART-seq2
SM4C1r5-P2-E02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell139

description:
SMART-seq2
SM4C1r5-P2-D07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell148

description:
SMART-seq2
SM4C1r5-P2-E04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell140

description:
SMART-seq2
SM4C1r5-P2-D08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell138

description:
SMART-seq2
SM4C1r5-P2-D06


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell141

description:
SMART-seq2
SM4C1r5-P2-D09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell136

description:
SMART-seq2
SM4C1r5-P2-D04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell137

description:
SMART-seq2
SM4C1r5-P2-D05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell161

description:
SMART-seq2
SM4C1r5-P2-F05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell134

description:
SMART-seq2
SM4C1r5-P2-D02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell135

description:
SMART-seq2
SM4C1r5-P2-D03


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell133

description:
SMART-seq2
SM4C1r5-P2-D01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell154

description:
SMART-seq2
SM4C1r5-P2-E10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell132

description:
SMART-seq2
SM4C1r5-P2-C12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell128

description:
SMART-seq2
SM4C1r5-P2-C08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell131

description:
SMART-seq2
SM4C1r5-P2-C11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell130

description:
SMART-seq2
SM4C1r5-P2-C10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell126

description:
SMART-seq2
SM4C1r5-P2-C06


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell129

description:
SMART-seq2
SM4C1r5-P2-C09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell125

description:
SMART-seq2
SM4C1r5-P2-C05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell120

description:
SMART-seq2
SM4C1r5-P2-B12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell127

description:
SMART-seq2
SM4C1r5-P2-C07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell119

description:
SMART-seq2
SM4C1r5-P2-B11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell118

description:
SMART-seq2
SM4C1r5-P2-B10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell115

description:
SMART-seq2
SM4C1r5-P2-B07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell121

description:
SMART-seq2
SM4C1r5-P2-C01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell116

description:
SMART-seq2
SM4C1r5-P2-B08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell113

description:
SMART-seq2
SM4C1r5-P2-B05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell123

description:
SMART-seq2
SM4C1r5-P2-C03


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell111

description:
SMART-seq2
SM4C1r5-P2-B03


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell110

description:
SMART-seq2
SM4C1r5-P2-B02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell122

description:
SMART-seq2
SM4C1r5-P2-C02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell109

description:
SMART-seq2
SM4C1r5-P2-B01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell108

description:
SMART-seq2
SM4C1r5-P2-A12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell112

description:
SMART-seq2
SM4C1r5-P2-B04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell114

description:
SMART-seq2
SM4C1r5-P2-B06


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell124

description:
SMART-seq2
SM4C1r5-P2-C04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell107

description:
SMART-seq2
SM4C1r5-P2-A11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell104

description:
SMART-seq2
SM4C1r5-P2-A08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell103

description:
SMART-seq2
SM4C1r5-P2-A07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell106

description:
SMART-seq2
SM4C1r5-P2-A10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell105

description:
SMART-seq2
SM4C1r5-P2-A09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell102

description:
SMART-seq2
SM4C1r5-P2-A06


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell100

description:
SMART-seq2
SM4C1r5-P2-A04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell117

description:
SMART-seq2
SM4C1r5-P2-B09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell101

description:
SMART-seq2
SM4C1r5-P2-A05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell98

description:
SMART-seq2
SM4C1r5-P2-A02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell94

description:
SMART-seq2
SM4C1r5-P1-H10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell95

description:
SMART-seq2
SM4C1r5-P1-H11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell92

description:
SMART-seq2
SM4C1r5-P1-H08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell96

description:
SMART-seq2
SM4C1r5-P1-H12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell91

description:
SMART-seq2
SM4C1r5-P1-H07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell87

description:
SMART-seq2
SM4C1r5-P1-H03


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell89

description:
SMART-seq2
SM4C1r5-P1-H05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell86

description:
SMART-seq2
SM4C1r5-P1-H02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell85

description:
SMART-seq2
SM4C1r5-P1-H01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell93

description:
SMART-seq2
SM4C1r5-P1-H09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell90

description:
SMART-seq2
SM4C1r5-P1-H06


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell83

description:
SMART-seq2
SM4C1r5-P1-G11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell79

description:
SMART-seq2
SM4C1r5-P1-G07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell80

description:
SMART-seq2
SM4C1r5-P1-G08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell84

description:
SMART-seq2
SM4C1r5-P1-G12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell76

description:
SMART-seq2
SM4C1r5-P1-G04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell81

description:
SMART-seq2
SM4C1r5-P1-G09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell77

description:
SMART-seq2
SM4C1r5-P1-G05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell78

description:
SMART-seq2
SM4C1r5-P1-G06


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell75

description:
SMART-seq2
SM4C1r5-P1-G03


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell74

description:
SMART-seq2
SM4C1r5-P1-G02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell73

description:
SMART-seq2
SM4C1r5-P1-G01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell99

description:
SMART-seq2
SM4C1r5-P2-A03


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell97

description:
SMART-seq2
SM4C1r5-P2-A01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell72

description:
SMART-seq2
SM4C1r5-P1-F12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell71

description:
SMART-seq2
SM4C1r5-P1-F11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell88

description:
SMART-seq2
SM4C1r5-P1-H04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell82

description:
SMART-seq2
SM4C1r5-P1-G10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell63

description:
SMART-seq2
SM4C1r5-P1-F03


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell62

description:
SMART-seq2
SM4C1r5-P1-F02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell65

description:
SMART-seq2
SM4C1r5-P1-F05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell58

description:
SMART-seq2
SM4C1r5-P1-E10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell67

description:
SMART-seq2
SM4C1r5-P1-F07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell64

description:
SMART-seq2
SM4C1r5-P1-F04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell61

description:
SMART-seq2
SM4C1r5-P1-F01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell68

description:
SMART-seq2
SM4C1r5-P1-F08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell60

description:
SMART-seq2
SM4C1r5-P1-E12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell56

description:
SMART-seq2
SM4C1r5-P1-E08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell55

description:
SMART-seq2
SM4C1r5-P1-E07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell54

description:
SMART-seq2
SM4C1r5-P1-E06


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell51

description:
SMART-seq2
SM4C1r5-P1-E03


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell53

description:
SMART-seq2
SM4C1r5-P1-E05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell70

description:
SMART-seq2
SM4C1r5-P1-F10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell69

description:
SMART-seq2
SM4C1r5-P1-F09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell49

description:
SMART-seq2
SM4C1r5-P1-E01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell48

description:
SMART-seq2
SM4C1r5-P1-D12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell45

description:
SMART-seq2
SM4C1r5-P1-D09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell50

description:
SMART-seq2
SM4C1r5-P1-E02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell43

description:
SMART-seq2
SM4C1r5-P1-D07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell47

description:
SMART-seq2
SM4C1r5-P1-D11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell44

description:
SMART-seq2
SM4C1r5-P1-D08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell46

description:
SMART-seq2
SM4C1r5-P1-D10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell57

description:
SMART-seq2
SM4C1r5-P1-E09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell42

description:
SMART-seq2
SM4C1r5-P1-D06


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell59

description:
SMART-seq2
SM4C1r5-P1-E11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell66

description:
SMART-seq2
SM4C1r5-P1-F06


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell41

description:
SMART-seq2
SM4C1r5-P1-D05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell39

description:
SMART-seq2
SM4C1r5-P1-D03


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell40

description:
SMART-seq2
SM4C1r5-P1-D04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell33

description:
SMART-seq2
SM4C1r5-P1-C09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell52

description:
SMART-seq2
SM4C1r5-P1-E04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell28

description:
SMART-seq2
SM4C1r5-P1-C04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell31

description:
SMART-seq2
SM4C1r5-P1-C07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell29

description:
SMART-seq2
SM4C1r5-P1-C05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell26

description:
SMART-seq2
SM4C1r5-P1-C02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell25

description:
SMART-seq2
SM4C1r5-P1-C01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell27

description:
SMART-seq2
SM4C1r5-P1-C03


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell23

description:
SMART-seq2
SM4C1r5-P1-B11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell22

description:
SMART-seq2
SM4C1r5-P1-B10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell24

description:
SMART-seq2
SM4C1r5-P1-B12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell21

description:
SMART-seq2
SM4C1r5-P1-B09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell20

description:
SMART-seq2
SM4C1r5-P1-B08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell19

description:
SMART-seq2
SM4C1r5-P1-B07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell17

description:
SMART-seq2
SM4C1r5-P1-B05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell16

description:
SMART-seq2
SM4C1r5-P1-B04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell36

description:
SMART-seq2
SM4C1r5-P1-C12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell18

description:
SMART-seq2
SM4C1r5-P1-B06


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell14

description:
SMART-seq2
SM4C1r5-P1-B02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell12

description:
SMART-seq2
SM4C1r5-P1-A12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell32

description:
SMART-seq2
SM4C1r5-P1-C08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell38

description:
SMART-seq2
SM4C1r5-P1-D02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell13

description:
SMART-seq2
SM4C1r5-P1-B01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell15

description:
SMART-seq2
SM4C1r5-P1-B03


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell11

description:
SMART-seq2
SM4C1r5-P1-A11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell37

description:
SMART-seq2
SM4C1r5-P1-D01


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell35

description:
SMART-seq2
SM4C1r5-P1-C11


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell34

description:
SMART-seq2
SM4C1r5-P1-C10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell9

description:
SMART-seq2
SM4C1r5-P1-A09


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell10

description:
SMART-seq2
SM4C1r5-P1-A10


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell8

description:
SMART-seq2
SM4C1r5-P1-A08


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell30

description:
SMART-seq2
SM4C1r5-P1-C06


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell7

description:
SMART-seq2
SM4C1r5-P1-A07


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell5

description:
SMART-seq2
SM4C1r5-P1-A05


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell2

description:
SMART-seq2
SM4C1r5-P1-A02


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell6

description:
SMART-seq2
SM4C1r5-P1-A06


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell4

description:
SMART-seq2
SM4C1r5-P1-A04


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell3

description:
SMART-seq2
SM4C1r5-P1-A03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell382

description:
SMART-seq2
AAVS1r5-P5-H10

value: AAVS1 control knockout


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell381

description:
SMART-seq2
AAVS1r5-P5-H09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell383

description:
SMART-seq2
AAVS1r5-P5-H11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell379

description:
SMART-seq2
AAVS1r5-P5-H07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell380

description:
SMART-seq2
AAVS1r5-P5-H08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell384

description:
SMART-seq2
AAVS1r5-P5-H12


title: scRNAseq_BT869_SMARCA4ko_d4_rep3_cell1

description:
SMART-seq2
SM4C1r5-P1-A01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell377

description:
SMART-seq2
AAVS1r5-P5-H05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell373

description:
SMART-seq2
AAVS1r5-P5-H01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell372

description:
SMART-seq2
AAVS1r5-P5-G12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell370

description:
SMART-seq2
AAVS1r5-P5-G10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell367

description:
SMART-seq2
AAVS1r5-P5-G07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell368

description:
SMART-seq2
AAVS1r5-P5-G08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell371

description:
SMART-seq2
AAVS1r5-P5-G11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell364

description:
SMART-seq2
AAVS1r5-P5-G04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell363

description:
SMART-seq2
AAVS1r5-P5-G03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell362

description:
SMART-seq2
AAVS1r5-P5-G02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell375

description:
SMART-seq2
AAVS1r5-P5-H03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell365

description:
SMART-seq2
AAVS1r5-P5-G05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell366

description:
SMART-seq2
AAVS1r5-P5-G06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell374

description:
SMART-seq2
AAVS1r5-P5-H02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell361

description:
SMART-seq2
AAVS1r5-P5-G01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell357

description:
SMART-seq2
AAVS1r5-P5-F09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell359

description:
SMART-seq2
AAVS1r5-P5-F11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell358

description:
SMART-seq2
AAVS1r5-P5-F10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell356

description:
SMART-seq2
AAVS1r5-P5-F08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell360

description:
SMART-seq2
AAVS1r5-P5-F12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell376

description:
SMART-seq2
AAVS1r5-P5-H04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell378

description:
SMART-seq2
AAVS1r5-P5-H06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell353

description:
SMART-seq2
AAVS1r5-P5-F05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell354

description:
SMART-seq2
AAVS1r5-P5-F06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell355

description:
SMART-seq2
AAVS1r5-P5-F07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell369

description:
SMART-seq2
AAVS1r5-P5-G09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell352

description:
SMART-seq2
AAVS1r5-P5-F04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell350

description:
SMART-seq2
AAVS1r5-P5-F02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell348

description:
SMART-seq2
AAVS1r5-P5-E12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell349

description:
SMART-seq2
AAVS1r5-P5-F01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell351

description:
SMART-seq2
AAVS1r5-P5-F03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell346

description:
SMART-seq2
AAVS1r5-P5-E10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell345

description:
SMART-seq2
AAVS1r5-P5-E09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell347

description:
SMART-seq2
AAVS1r5-P5-E11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell342

description:
SMART-seq2
AAVS1r5-P5-E06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell343

description:
SMART-seq2
AAVS1r5-P5-E07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell344

description:
SMART-seq2
AAVS1r5-P5-E08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell338

description:
SMART-seq2
AAVS1r5-P5-E02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell340

description:
SMART-seq2
AAVS1r5-P5-E04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell337

description:
SMART-seq2
AAVS1r5-P5-E01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell335

description:
SMART-seq2
AAVS1r5-P5-D11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell334

description:
SMART-seq2
AAVS1r5-P5-D10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell336

description:
SMART-seq2
AAVS1r5-P5-D12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell339

description:
SMART-seq2
AAVS1r5-P5-E03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell333

description:
SMART-seq2
AAVS1r5-P5-D09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell331

description:
SMART-seq2
AAVS1r5-P5-D07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell332

description:
SMART-seq2
AAVS1r5-P5-D08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell330

description:
SMART-seq2
AAVS1r5-P5-D06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell328

description:
SMART-seq2
AAVS1r5-P5-D04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell327

description:
SMART-seq2
AAVS1r5-P5-D03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell325

description:
SMART-seq2
AAVS1r5-P5-D01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell323

description:
SMART-seq2
AAVS1r5-P5-C11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell324

description:
SMART-seq2
AAVS1r5-P5-C12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell322

description:
SMART-seq2
AAVS1r5-P5-C10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell326

description:
SMART-seq2
AAVS1r5-P5-D02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell321

description:
SMART-seq2
AAVS1r5-P5-C09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell319

description:
SMART-seq2
AAVS1r5-P5-C07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell341

description:
SMART-seq2
AAVS1r5-P5-E05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell315

description:
SMART-seq2
AAVS1r5-P5-C03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell317

description:
SMART-seq2
AAVS1r5-P5-C05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell316

description:
SMART-seq2
AAVS1r5-P5-C04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell314

description:
SMART-seq2
AAVS1r5-P5-C02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell320

description:
SMART-seq2
AAVS1r5-P5-C08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell312

description:
SMART-seq2
AAVS1r5-P5-B12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell318

description:
SMART-seq2
AAVS1r5-P5-C06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell311

description:
SMART-seq2
AAVS1r5-P5-B11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell310

description:
SMART-seq2
AAVS1r5-P5-B10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell313

description:
SMART-seq2
AAVS1r5-P5-C01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell308

description:
SMART-seq2
AAVS1r5-P5-B08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell329

description:
SMART-seq2
AAVS1r5-P5-D05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell306

description:
SMART-seq2
AAVS1r5-P5-B06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell304

description:
SMART-seq2
AAVS1r5-P5-B04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell305

description:
SMART-seq2
AAVS1r5-P5-B05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell302

description:
SMART-seq2
AAVS1r5-P5-B02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell307

description:
SMART-seq2
AAVS1r5-P5-B07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell300

description:
SMART-seq2
AAVS1r5-P5-A12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell301

description:
SMART-seq2
AAVS1r5-P5-B01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell299

description:
SMART-seq2
AAVS1r5-P5-A11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell298

description:
SMART-seq2
AAVS1r5-P5-A10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell297

description:
SMART-seq2
AAVS1r5-P5-A09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell295

description:
SMART-seq2
AAVS1r5-P5-A07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell296

description:
SMART-seq2
AAVS1r5-P5-A08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell294

description:
SMART-seq2
AAVS1r5-P5-A06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell293

description:
SMART-seq2
AAVS1r5-P5-A05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell291

description:
SMART-seq2
AAVS1r5-P5-A03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell290

description:
SMART-seq2
AAVS1r5-P5-A02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell309

description:
SMART-seq2
AAVS1r5-P5-B09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell289

description:
SMART-seq2
AAVS1r5-P5-A01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell287

description:
SMART-seq2
AAVS1r5-P3-H11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell285

description:
SMART-seq2
AAVS1r5-P3-H09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell284

description:
SMART-seq2
AAVS1r5-P3-H08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell288

description:
SMART-seq2
AAVS1r5-P3-H12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell283

description:
SMART-seq2
AAVS1r5-P3-H07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell282

description:
SMART-seq2
AAVS1r5-P3-H06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell280

description:
SMART-seq2
AAVS1r5-P3-H04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell286

description:
SMART-seq2
AAVS1r5-P3-H10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell278

description:
SMART-seq2
AAVS1r5-P3-H02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell274

description:
SMART-seq2
AAVS1r5-P3-G10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell279

description:
SMART-seq2
AAVS1r5-P3-H03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell281

description:
SMART-seq2
AAVS1r5-P3-H05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell277

description:
SMART-seq2
AAVS1r5-P3-H01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell275

description:
SMART-seq2
AAVS1r5-P3-G11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell271

description:
SMART-seq2
AAVS1r5-P3-G07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell272

description:
SMART-seq2
AAVS1r5-P3-G08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell276

description:
SMART-seq2
AAVS1r5-P3-G12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell303

description:
SMART-seq2
AAVS1r5-P5-B03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell269

description:
SMART-seq2
AAVS1r5-P3-G05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell267

description:
SMART-seq2
AAVS1r5-P3-G03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell292

description:
SMART-seq2
AAVS1r5-P5-A04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell265

description:
SMART-seq2
AAVS1r5-P3-G01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell273

description:
SMART-seq2
AAVS1r5-P3-G09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell266

description:
SMART-seq2
AAVS1r5-P3-G02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell270

description:
SMART-seq2
AAVS1r5-P3-G06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell264

description:
SMART-seq2
AAVS1r5-P3-F12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell263

description:
SMART-seq2
AAVS1r5-P3-F11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell268

description:
SMART-seq2
AAVS1r5-P3-G04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell262

description:
SMART-seq2
AAVS1r5-P3-F10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell261

description:
SMART-seq2
AAVS1r5-P3-F09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell260

description:
SMART-seq2
AAVS1r5-P3-F08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell259

description:
SMART-seq2
AAVS1r5-P3-F07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell258

description:
SMART-seq2
AAVS1r5-P3-F06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell257

description:
SMART-seq2
AAVS1r5-P3-F05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell255

description:
SMART-seq2
AAVS1r5-P3-F03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell256

description:
SMART-seq2
AAVS1r5-P3-F04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell253

description:
SMART-seq2
AAVS1r5-P3-F01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell254

description:
SMART-seq2
AAVS1r5-P3-F02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell252

description:
SMART-seq2
AAVS1r5-P3-E12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell250

description:
SMART-seq2
AAVS1r5-P3-E10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell249

description:
SMART-seq2
AAVS1r5-P3-E09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell247

description:
SMART-seq2
AAVS1r5-P3-E07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell248

description:
SMART-seq2
AAVS1r5-P3-E08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell243

description:
SMART-seq2
AAVS1r5-P3-E03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell244

description:
SMART-seq2
AAVS1r5-P3-E04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell242

description:
SMART-seq2
AAVS1r5-P3-E02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell246

description:
SMART-seq2
AAVS1r5-P3-E06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell240

description:
SMART-seq2
AAVS1r5-P3-D12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell245

description:
SMART-seq2
AAVS1r5-P3-E05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell239

description:
SMART-seq2
AAVS1r5-P3-D11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell238

description:
SMART-seq2
AAVS1r5-P3-D10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell241

description:
SMART-seq2
AAVS1r5-P3-E01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell236

description:
SMART-seq2
AAVS1r5-P3-D08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell235

description:
SMART-seq2
AAVS1r5-P3-D07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell233

description:
SMART-seq2
AAVS1r5-P3-D05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell232

description:
SMART-seq2
AAVS1r5-P3-D04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell231

description:
SMART-seq2
AAVS1r5-P3-D03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell225

description:
SMART-seq2
AAVS1r5-P3-C09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell227

description:
SMART-seq2
AAVS1r5-P3-C11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell226

description:
SMART-seq2
AAVS1r5-P3-C10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell222

description:
SMART-seq2
AAVS1r5-P3-C06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell223

description:
SMART-seq2
AAVS1r5-P3-C07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell251

description:
SMART-seq2
AAVS1r5-P3-E11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell230

description:
SMART-seq2
AAVS1r5-P3-D02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell221

description:
SMART-seq2
AAVS1r5-P3-C05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell220

description:
SMART-seq2
AAVS1r5-P3-C04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell229

description:
SMART-seq2
AAVS1r5-P3-D01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell234

description:
SMART-seq2
AAVS1r5-P3-D06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell218

description:
SMART-seq2
AAVS1r5-P3-C02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell224

description:
SMART-seq2
AAVS1r5-P3-C08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell237

description:
SMART-seq2
AAVS1r5-P3-D09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell215

description:
SMART-seq2
AAVS1r5-P3-B11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell213

description:
SMART-seq2
AAVS1r5-P3-B09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell217

description:
SMART-seq2
AAVS1r5-P3-C01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell211

description:
SMART-seq2
AAVS1r5-P3-B07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell216

description:
SMART-seq2
AAVS1r5-P3-B12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell212

description:
SMART-seq2
AAVS1r5-P3-B08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell214

description:
SMART-seq2
AAVS1r5-P3-B10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell210

description:
SMART-seq2
AAVS1r5-P3-B06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell208

description:
SMART-seq2
AAVS1r5-P3-B04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell206

description:
SMART-seq2
AAVS1r5-P3-B02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell205

description:
SMART-seq2
AAVS1r5-P3-B01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell207

description:
SMART-seq2
AAVS1r5-P3-B03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell228

description:
SMART-seq2
AAVS1r5-P3-C12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell204

description:
SMART-seq2
AAVS1r5-P3-A12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell202

description:
SMART-seq2
AAVS1r5-P3-A10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell201

description:
SMART-seq2
AAVS1r5-P3-A09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell203

description:
SMART-seq2
AAVS1r5-P3-A11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell219

description:
SMART-seq2
AAVS1r5-P3-C03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell199

description:
SMART-seq2
AAVS1r5-P3-A07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell200

description:
SMART-seq2
AAVS1r5-P3-A08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell198

description:
SMART-seq2
AAVS1r5-P3-A06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell197

description:
SMART-seq2
AAVS1r5-P3-A05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell195

description:
SMART-seq2
AAVS1r5-P3-A03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell196

description:
SMART-seq2
AAVS1r5-P3-A04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell194

description:
SMART-seq2
AAVS1r5-P3-A02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell193

description:
SMART-seq2
AAVS1r5-P3-A01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell191

description:
SMART-seq2
AAVS1r5-P2-H11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell209

description:
SMART-seq2
AAVS1r5-P3-B05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell192

description:
SMART-seq2
AAVS1r5-P2-H12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell189

description:
SMART-seq2
AAVS1r5-P2-H09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell186

description:
SMART-seq2
AAVS1r5-P2-H06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell187

description:
SMART-seq2
AAVS1r5-P2-H07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell190

description:
SMART-seq2
AAVS1r5-P2-H10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell188

description:
SMART-seq2
AAVS1r5-P2-H08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell185

description:
SMART-seq2
AAVS1r5-P2-H05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell183

description:
SMART-seq2
AAVS1r5-P2-H03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell184

description:
SMART-seq2
AAVS1r5-P2-H04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell180

description:
SMART-seq2
AAVS1r5-P2-G12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell182

description:
SMART-seq2
AAVS1r5-P2-H02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell179

description:
SMART-seq2
AAVS1r5-P2-G11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell178

description:
SMART-seq2
AAVS1r5-P2-G10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell177

description:
SMART-seq2
AAVS1r5-P2-G09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell176

description:
SMART-seq2
AAVS1r5-P2-G08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell175

description:
SMART-seq2
AAVS1r5-P2-G07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell174

description:
SMART-seq2
AAVS1r5-P2-G06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell173

description:
SMART-seq2
AAVS1r5-P2-G05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell170

description:
SMART-seq2
AAVS1r5-P2-G02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell171

description:
SMART-seq2
AAVS1r5-P2-G03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell172

description:
SMART-seq2
AAVS1r5-P2-G04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell168

description:
SMART-seq2
AAVS1r5-P2-F12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell166

description:
SMART-seq2
AAVS1r5-P2-F10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell165

description:
SMART-seq2
AAVS1r5-P2-F09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell169

description:
SMART-seq2
AAVS1r5-P2-G01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell167

description:
SMART-seq2
AAVS1r5-P2-F11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell162

description:
SMART-seq2
AAVS1r5-P2-F06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell164

description:
SMART-seq2
AAVS1r5-P2-F08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell163

description:
SMART-seq2
AAVS1r5-P2-F07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell181

description:
SMART-seq2
AAVS1r5-P2-H01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell155

description:
SMART-seq2
AAVS1r5-P2-E11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell156

description:
SMART-seq2
AAVS1r5-P2-E12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell157

description:
SMART-seq2
AAVS1r5-P2-F01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell158

description:
SMART-seq2
AAVS1r5-P2-F02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell161

description:
SMART-seq2
AAVS1r5-P2-F05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell160

description:
SMART-seq2
AAVS1r5-P2-F04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell154

description:
SMART-seq2
AAVS1r5-P2-E10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell151

description:
SMART-seq2
AAVS1r5-P2-E07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell153

description:
SMART-seq2
AAVS1r5-P2-E09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell150

description:
SMART-seq2
AAVS1r5-P2-E06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell148

description:
SMART-seq2
AAVS1r5-P2-E04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell145

description:
SMART-seq2
AAVS1r5-P2-E01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell144

description:
SMART-seq2
AAVS1r5-P2-D12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell149

description:
SMART-seq2
AAVS1r5-P2-E05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell141

description:
SMART-seq2
AAVS1r5-P2-D09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell147

description:
SMART-seq2
AAVS1r5-P2-E03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell139

description:
SMART-seq2
AAVS1r5-P2-D07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell143

description:
SMART-seq2
AAVS1r5-P2-D11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell140

description:
SMART-seq2
AAVS1r5-P2-D08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell159

description:
SMART-seq2
AAVS1r5-P2-F03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell138

description:
SMART-seq2
AAVS1r5-P2-D06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell136

description:
SMART-seq2
AAVS1r5-P2-D04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell134

description:
SMART-seq2
AAVS1r5-P2-D02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell137

description:
SMART-seq2
AAVS1r5-P2-D05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell133

description:
SMART-seq2
AAVS1r5-P2-D01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell135

description:
SMART-seq2
AAVS1r5-P2-D03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell132

description:
SMART-seq2
AAVS1r5-P2-C12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell131

description:
SMART-seq2
AAVS1r5-P2-C11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell152

description:
SMART-seq2
AAVS1r5-P2-E08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell130

description:
SMART-seq2
AAVS1r5-P2-C10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell125

description:
SMART-seq2
AAVS1r5-P2-C05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell124

description:
SMART-seq2
AAVS1r5-P2-C04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell122

description:
SMART-seq2
AAVS1r5-P2-C02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell129

description:
SMART-seq2
AAVS1r5-P2-C09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell126

description:
SMART-seq2
AAVS1r5-P2-C06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell128

description:
SMART-seq2
AAVS1r5-P2-C08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell146

description:
SMART-seq2
AAVS1r5-P2-E02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell142

description:
SMART-seq2
AAVS1r5-P2-D10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell121

description:
SMART-seq2
AAVS1r5-P2-C01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell118

description:
SMART-seq2
AAVS1r5-P2-B10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell115

description:
SMART-seq2
AAVS1r5-P2-B07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell117

description:
SMART-seq2
AAVS1r5-P2-B09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell114

description:
SMART-seq2
AAVS1r5-P2-B06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell116

description:
SMART-seq2
AAVS1r5-P2-B08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell111

description:
SMART-seq2
AAVS1r5-P2-B03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell112

description:
SMART-seq2
AAVS1r5-P2-B04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell110

description:
SMART-seq2
AAVS1r5-P2-B02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell127

description:
SMART-seq2
AAVS1r5-P2-C07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell109

description:
SMART-seq2
AAVS1r5-P2-B01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell106

description:
SMART-seq2
AAVS1r5-P2-A10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell123

description:
SMART-seq2
AAVS1r5-P2-C03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell108

description:
SMART-seq2
AAVS1r5-P2-A12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell105

description:
SMART-seq2
AAVS1r5-P2-A09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell104

description:
SMART-seq2
AAVS1r5-P2-A08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell103

description:
SMART-seq2
AAVS1r5-P2-A07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell107

description:
SMART-seq2
AAVS1r5-P2-A11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell102

description:
SMART-seq2
AAVS1r5-P2-A06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell101

description:
SMART-seq2
AAVS1r5-P2-A05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell98

description:
SMART-seq2
AAVS1r5-P2-A02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell95

description:
SMART-seq2
AAVS1r5-P1-H11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell97

description:
SMART-seq2
AAVS1r5-P2-A01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell100

description:
SMART-seq2
AAVS1r5-P2-A04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell99

description:
SMART-seq2
AAVS1r5-P2-A03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell96

description:
SMART-seq2
AAVS1r5-P1-H12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell94

description:
SMART-seq2
AAVS1r5-P1-H10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell120

description:
SMART-seq2
AAVS1r5-P2-B12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell119

description:
SMART-seq2
AAVS1r5-P2-B11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell113

description:
SMART-seq2
AAVS1r5-P2-B05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell93

description:
SMART-seq2
AAVS1r5-P1-H09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell92

description:
SMART-seq2
AAVS1r5-P1-H08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell90

description:
SMART-seq2
AAVS1r5-P1-H06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell91

description:
SMART-seq2
AAVS1r5-P1-H07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell86

description:
SMART-seq2
AAVS1r5-P1-H02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell82

description:
SMART-seq2
AAVS1r5-P1-G10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell80

description:
SMART-seq2
AAVS1r5-P1-G08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell79

description:
SMART-seq2
AAVS1r5-P1-G07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell84

description:
SMART-seq2
AAVS1r5-P1-G12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell81

description:
SMART-seq2
AAVS1r5-P1-G09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell71

description:
SMART-seq2
AAVS1r5-P1-F11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell73

description:
SMART-seq2
AAVS1r5-P1-G01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell69

description:
SMART-seq2
AAVS1r5-P1-F09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell75

description:
SMART-seq2
AAVS1r5-P1-G03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell70

description:
SMART-seq2
AAVS1r5-P1-F10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell63

description:
SMART-seq2
AAVS1r5-P1-F03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell67

description:
SMART-seq2
AAVS1r5-P1-F07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell87

description:
SMART-seq2
AAVS1r5-P1-H03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell65

description:
SMART-seq2
AAVS1r5-P1-F05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell68

description:
SMART-seq2
AAVS1r5-P1-F08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell77

description:
SMART-seq2
AAVS1r5-P1-G05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell89

description:
SMART-seq2
AAVS1r5-P1-H05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell66

description:
SMART-seq2
AAVS1r5-P1-F06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell74

description:
SMART-seq2
AAVS1r5-P1-G02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell83

description:
SMART-seq2
AAVS1r5-P1-G11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell64

description:
SMART-seq2
AAVS1r5-P1-F04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell88

description:
SMART-seq2
AAVS1r5-P1-H04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell72

description:
SMART-seq2
AAVS1r5-P1-F12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell76

description:
SMART-seq2
AAVS1r5-P1-G04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell78

description:
SMART-seq2
AAVS1r5-P1-G06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell61

description:
SMART-seq2
AAVS1r5-P1-F01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell85

description:
SMART-seq2
AAVS1r5-P1-H01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell62

description:
SMART-seq2
AAVS1r5-P1-F02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell60

description:
SMART-seq2
AAVS1r5-P1-E12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell58

description:
SMART-seq2
AAVS1r5-P1-E10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell59

description:
SMART-seq2
AAVS1r5-P1-E11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell57

description:
SMART-seq2
AAVS1r5-P1-E09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell56

description:
SMART-seq2
AAVS1r5-P1-E08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell55

description:
SMART-seq2
AAVS1r5-P1-E07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell54

description:
SMART-seq2
AAVS1r5-P1-E06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell52

description:
SMART-seq2
AAVS1r5-P1-E04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell51

description:
SMART-seq2
AAVS1r5-P1-E03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell47

description:
SMART-seq2
AAVS1r5-P1-D11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell42

description:
SMART-seq2
AAVS1r5-P1-D06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell46

description:
SMART-seq2
AAVS1r5-P1-D10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell41

description:
SMART-seq2
AAVS1r5-P1-D05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell48

description:
SMART-seq2
AAVS1r5-P1-D12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell50

description:
SMART-seq2
AAVS1r5-P1-E02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell39

description:
SMART-seq2
AAVS1r5-P1-D03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell43

description:
SMART-seq2
AAVS1r5-P1-D07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell34

description:
SMART-seq2
AAVS1r5-P1-C10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell44

description:
SMART-seq2
AAVS1r5-P1-D08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell38

description:
SMART-seq2
AAVS1r5-P1-D02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell45

description:
SMART-seq2
AAVS1r5-P1-D09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell37

description:
SMART-seq2
AAVS1r5-P1-D01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell32

description:
SMART-seq2
AAVS1r5-P1-C08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell36

description:
SMART-seq2
AAVS1r5-P1-C12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell33

description:
SMART-seq2
AAVS1r5-P1-C09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell35

description:
SMART-seq2
AAVS1r5-P1-C11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell31

description:
SMART-seq2
AAVS1r5-P1-C07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell30

description:
SMART-seq2
AAVS1r5-P1-C06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell29

description:
SMART-seq2
AAVS1r5-P1-C05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell28

description:
SMART-seq2
AAVS1r5-P1-C04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell27

description:
SMART-seq2
AAVS1r5-P1-C03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell26

description:
SMART-seq2
AAVS1r5-P1-C02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell53

description:
SMART-seq2
AAVS1r5-P1-E05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell24

description:
SMART-seq2
AAVS1r5-P1-B12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell25

description:
SMART-seq2
AAVS1r5-P1-C01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell49

description:
SMART-seq2
AAVS1r5-P1-E01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell40

description:
SMART-seq2
AAVS1r5-P1-D04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell23

description:
SMART-seq2
AAVS1r5-P1-B11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell22

description:
SMART-seq2
AAVS1r5-P1-B10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell21

description:
SMART-seq2
AAVS1r5-P1-B09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell19

description:
SMART-seq2
AAVS1r5-P1-B07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell20

description:
SMART-seq2
AAVS1r5-P1-B08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell17

description:
SMART-seq2
AAVS1r5-P1-B05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell15

description:
SMART-seq2
AAVS1r5-P1-B03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell18

description:
SMART-seq2
AAVS1r5-P1-B06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell13

description:
SMART-seq2
AAVS1r5-P1-B01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell14

description:
SMART-seq2
AAVS1r5-P1-B02


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell12

description:
SMART-seq2
AAVS1r5-P1-A12


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell11

description:
SMART-seq2
AAVS1r5-P1-A11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell6

description:
SMART-seq2
AAVS1r5-P1-A06


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell9

description:
SMART-seq2
AAVS1r5-P1-A09


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell8

description:
SMART-seq2
AAVS1r5-P1-A08


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell16

description:
SMART-seq2
AAVS1r5-P1-B04


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell7

description:
SMART-seq2
AAVS1r5-P1-A07


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell5

description:
SMART-seq2
AAVS1r5-P1-A05


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell10

description:
SMART-seq2
AAVS1r5-P1-A10


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell1

description:
SMART-seq2
AAVS1r5-P1-A01


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell2

description:
SMART-seq2
AAVS1r5-P1-A02


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell379

description:
SMART-seq2
SM4KOB1-P1-H07


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell381

description:
SMART-seq2
SM4KOB1-P1-H09


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell378

description:
SMART-seq2
SM4KOB1-P1-H06


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell384

description:
SMART-seq2
SM4KOB1-P1-H12


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell380

description:
SMART-seq2
SM4KOB1-P1-H08


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell382

description:
SMART-seq2
SM4KOB1-P1-H10


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell383

description:
SMART-seq2
SM4KOB1-P1-H11


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell377

description:
SMART-seq2
SM4KOB1-P1-H05


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell375

description:
SMART-seq2
SM4KOB1-P1-H03


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell373

description:
SMART-seq2
SM4KOB1-P1-H01


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell374

description:
SMART-seq2
SM4KOB1-P1-H02


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell372

description:
SMART-seq2
SM4KOB1-P1-G12


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell371

description:
SMART-seq2
SM4KOB1-P1-G11


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell4

description:
SMART-seq2
AAVS1r5-P1-A04


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell366

description:
SMART-seq2
SM4KOB1-P1-G06


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell368

description:
SMART-seq2
SM4KOB1-P1-G08


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell370

description:
SMART-seq2
SM4KOB1-P1-G10


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell369

description:
SMART-seq2
SM4KOB1-P1-G09


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell367

description:
SMART-seq2
SM4KOB1-P1-G07


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell364

description:
SMART-seq2
SM4KOB1-P1-G04


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell363

description:
SMART-seq2
SM4KOB1-P1-G03


title: scRNAseq_BT869_AAVS1ko_d4_rep3_cell3

description:
SMART-seq2
AAVS1r5-P1-A03


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell359

description:
SMART-seq2
SM4KOB1-P1-F11


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell365

description:
SMART-seq2
SM4KOB1-P1-G05


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell358

description:
SMART-seq2
SM4KOB1-P1-F10


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell362

description:
SMART-seq2
SM4KOB1-P1-G02


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell360

description:
SMART-seq2
SM4KOB1-P1-F12


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell376

description:
SMART-seq2
SM4KOB1-P1-H04


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell354

description:
SMART-seq2
SM4KOB1-P1-F06


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell355

description:
SMART-seq2
SM4KOB1-P1-F07


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell351

description:
SMART-seq2
SM4KOB1-P1-F03


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell353

description:
SMART-seq2
SM4KOB1-P1-F05


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell356

description:
SMART-seq2
SM4KOB1-P1-F08


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell357

description:
SMART-seq2
SM4KOB1-P1-F09


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell352

description:
SMART-seq2
SM4KOB1-P1-F04


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell361

description:
SMART-seq2
SM4KOB1-P1-G01


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell350

description:
SMART-seq2
SM4KOB1-P1-F02


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell347

description:
SMART-seq2
SM4KOB1-P1-E11


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell345

description:
SMART-seq2
SM4KOB1-P1-E09


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell348

description:
SMART-seq2
SM4KOB1-P1-E12


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell349

description:
SMART-seq2
SM4KOB1-P1-F01


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell346

description:
SMART-seq2
SM4KOB1-P1-E10


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell343

description:
SMART-seq2
SM4KOB1-P1-E07


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell344

description:
SMART-seq2
SM4KOB1-P1-E08


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell341

description:
SMART-seq2
SM4KOB1-P1-E05


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell342

description:
SMART-seq2
SM4KOB1-P1-E06


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell340

description:
SMART-seq2
SM4KOB1-P1-E04


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell339

description:
SMART-seq2
SM4KOB1-P1-E03


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell336

description:
SMART-seq2
SM4KOB1-P1-D12


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell335

description:
SMART-seq2
SM4KOB1-P1-D11


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell337

description:
SMART-seq2
SM4KOB1-P1-E01


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell330

description:
SMART-seq2
SM4KOB1-P1-D06


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell334

description:
SMART-seq2
SM4KOB1-P1-D10


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell333

description:
SMART-seq2
SM4KOB1-P1-D09


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell332

description:
SMART-seq2
SM4KOB1-P1-D08


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell328

description:
SMART-seq2
SM4KOB1-P1-D04


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell326

description:
SMART-seq2
SM4KOB1-P1-D02


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell324

description:
SMART-seq2
SM4KOB1-P1-C12


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell329

description:
SMART-seq2
SM4KOB1-P1-D05


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell327

description:
SMART-seq2
SM4KOB1-P1-D03


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell323

description:
SMART-seq2
SM4KOB1-P1-C11


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell322

description:
SMART-seq2
SM4KOB1-P1-C10


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell325

description:
SMART-seq2
SM4KOB1-P1-D01


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell319

description:
SMART-seq2
SM4KOB1-P1-C07


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell321

description:
SMART-seq2
SM4KOB1-P1-C09


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell320

description:
SMART-seq2
SM4KOB1-P1-C08


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell315

description:
SMART-seq2
SM4KOB1-P1-C03


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell316

description:
SMART-seq2
SM4KOB1-P1-C04


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell318

description:
SMART-seq2
SM4KOB1-P1-C06


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell312

description:
SMART-seq2
SM4KOB1-P1-B12


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell338

description:
SMART-seq2
SM4KOB1-P1-E02


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell314

description:
SMART-seq2
SM4KOB1-P1-C02


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell317

description:
SMART-seq2
SM4KOB1-P1-C05


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell310

description:
SMART-seq2
SM4KOB1-P1-B10


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell311

description:
SMART-seq2
SM4KOB1-P1-B11


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell308

description:
SMART-seq2
SM4KOB1-P1-B08


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell313

description:
SMART-seq2
SM4KOB1-P1-C01


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell307

description:
SMART-seq2
SM4KOB1-P1-B07


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell331

description:
SMART-seq2
SM4KOB1-P1-D07


title: scRNAseq_BT869_SMARCA4ko_d4_rep2_cell309

description:
SMART-seq2
SM4KOB1-P1-B09


title: Triple-negative breast cancer cell line MDA-MB-468 infected with IRAK2 knockdown vector, biological replicate 3

city: Aachen

first: Jochen

last: Maurer

state: NRW

address: Pauwelsstraße 30

country: Germany

institute: RWTH Uniklinik Aachen

data_processing:
FASTQ files were generated using bcl2fastq (Illumina). To facilitate reproducible analysis, samples were processed using the publicly available nf-core/RNA-seq pipeline version 3.4 implemented in Nextflow 21.04.0 using Docker 20.10.8 with the minimal command.
Lane-level reads were trimmed using Trim Galore 0.6.7  and aligned to the human genome (GRCh38.p13) using STAR 2.7.9a. The gene-level assignment was performed using Salmon v1.5.2.
Analysis was performed using custom scripts in R version 4.1.1 using the DESeq2 v.1.32.0 framework. Differential expression analysis was done with DESEQ2 package in R and following the instruction for Salmon quantification.
Processed data files are in bigWig format which were generated by bedGraphToBigWig in nfcore/rnaseq pipeline.
Assembly: GRCh38.p13
Supplementary files format and content: bigWig
Supplementary files format and content: salmon.merged.gene_counts.xlsx

source_name: Derived from metastatic site: Pleural effusion

extract_protocol:
RNA was extracted from cells pellet using miRNeasy® mini kit (Qiagen, 1038703).
The library preparation method used was Invitrogen™ Collibri™ 3’ mRNA Library Prep Kit.

value: Derived from metastatic site:Pleural effusion

value: Triple-negative breast cancer cell

value: IRAK2 knockdown

value: Lentivirally transduced with IRAK2 inducible knockdown vector


title: Triple-negative breast cancer cell line MDA-MB-468 infected with IRAK2 knockdown vector, biological replicate 2


title: Triple-negative breast cancer cell line MDA-MB-468 infected with control vector, biological replicate 1

value: Control

value: Lentivirally transduced with inducible control vector


title: Triple-negative breast cancer cell line MDA-MB-468 infected with IRAK2 knockdown vector, biological replicate 1


title: Triple-negative breast cancer primary cell line BCSC3 infected with IRAK2 knockdown vector, biological replicate 3

source_name: Isolated from triple-negative breast cancer tumor

value: Breast cancer stem cell


title: Triple-negative breast cancer cell line MDA-MB-468 infected with control vector, biological replicate 2


title: Triple-negative breast cancer cell line MDA-MB-468 infected with control vector, biological replicate 3