title: LeafBlade_Nipponbare_49DAT_LP_2016

description: Gene expression of leaf blade of Nipponbare at 49 days after transplanting under low available phosphate condition in 2016

source_name: Leaf blade, Nipponbare, 49 days after transplanting, low available phosphate, 2016


title: LeafBlade_Nipponbare_27DAT_HP_2015

status: Public on Nov 08 2022

type: RNA

city: Tsukuba

first: Hinako

last: Takehisa

address: 2-1-2 Kannondai

country: Japan

institute: National Institute of Agrobiological Sciences (NIAS)

description: Gene expression of leaf blade of Nipponbare at 27 days after transplanting under high available phosphate condition in 2015

hyb_protocol: For hybridization, 1650 ng of cyanine 3-labeled cRNA is fragmented and hybridized on the slide of rice 4x44K microarray RAP-DB (G2519F#15241) at 65°C for 17 hours using the Agilent Gene Expression Hybridization Kit.

scan_protocol: Slides were scanned on an Agilent G2505B DNA microarray scanner using one-color scan setting for 4x44K array slides (Scan Area 61x21.6 mm, Scan resolution 5um,  Dye channel is set to Green PMT: XDR Hi 100%; XDR Lo 10%).

data_processing: The scanned images were analyzed with Feature Extraction Software 11.5.1.1 (Agilent) using default parameters to obtain background subtracted and spatially detrended processed signal intensities. The processed signal intensities were used for 75 percentile normalization and log2 transformation.

molecule: total RNA

organism: Oryza sativa Japonica Group

source_name: Leaf blade, Nipponbare, 27 days after transplanting, high available phosphate, 2015

label_protocol: 400 ng of total RNA was added with one-color spike-mix and labeling was performed using Quick Amp Labeling Kit, One-Color (Agilent) in the presence of cyanine-3-CTP accoring to the manufacturer's protocol. The cyanine-3-labeled cRNA was purified by RNeasy Mini Kit (QIAGEN), and quantified using NanoDrop ND-1000 UV-VIS spectrophotometer.

growth_protocol: All plants were grown in paddy field in Tsukuba, Japan (~36o N latitude) during a normal rice growing season in 2012, 2014, 2015 and 2016.

extract_protocol: Total RNA was extracted using RNeasy Plant Mini Kit (QIAGEN) according to the manufacturer's protocol, quantitied using NanoDrop ND-1000 UV-VIS spectrophotometer (NanoDrop) and quality-checked using Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA, USA).

tag: cultivar

value: Nipponbare

tag: organ/tissue

value: Leaf blade

tag: growth stage

value: 27 days after transplanting

tag: field soil type

value: high available phosphate

tag: year


title: LeafBlade_Nipponbare_14DAT_LP_2016

description: Gene expression of leaf blade of Nipponbare at 14 days after transplanting under low available phosphate condition in 2016

source_name: Leaf blade, Nipponbare, 14 days after transplanting, low available phosphate, 2016

value: 14 days after transplanting

value: low available phosphate


title: LeafBlade_Nipponbare_35DAT_LP_2016

description: Gene expression of leaf blade of Nipponbare at 35 days after transplanting under low available phosphate condition in 2016

source_name: Leaf blade, Nipponbare, 35 days after transplanting, low available phosphate, 2016

value: 35 days after transplanting


title: LeafBlade_Nipponbare_21DAT_HP_2015

description: Gene expression of leaf blade of Nipponbare at 21 days after transplanting under high available phosphate condition in 2015

source_name: Leaf blade, Nipponbare, 21 days after transplanting, high available phosphate, 2015

value: 21 days after transplanting


title: LeafBlade_Nipponbare_13DAT_HP_2015

description: Gene expression of leaf blade of Nipponbare at 13 days after transplanting under high available phosphate condition in 2015

source_name: Leaf blade, Nipponbare, 13 days after transplanting, high available phosphate, 2015

value: 13 days after transplanting


title: LeafBlade_Nipponbare_77DAT_LP_2016

description: Gene expression of leaf blade of Nipponbare at 77 days after transplanting under low available phosphate condition in 2016

source_name: Leaf blade, Nipponbare, 77 days after transplanting, low available phosphate, 2016

value: 77 days after transplanting


title: LeafBlade_Nipponbare_42DAT_HP_2016

description: Gene expression of leaf blade of Nipponbare at 42 days after transplanting under high available phosphate condition in 2016

source_name: Leaf blade, Nipponbare, 42 days after transplanting, high available phosphate, 2016

value: 42 days after transplanting


title: LeafBlade_Nipponbare_54DAT_HP_2015

description: Gene expression of leaf blade of Nipponbare at 54 days after transplanting under high available phosphate condition in 2015

source_name: Leaf blade, Nipponbare, 54 days after transplanting, high available phosphate, 2015

value: 54 days after transplanting


title: LeafBlade_Nipponbare_34DAT_HP_2015

description: Gene expression of leaf blade of Nipponbare at 34 days after transplanting under high available phosphate condition in 2015

source_name: Leaf blade, Nipponbare, 34 days after transplanting, high available phosphate, 2015

value: 34 days after transplanting


title: LeafBlade_Nipponbare_28DAT_HP_2016

description: Gene expression of leaf blade of Nipponbare at 28 days after transplanting under high available phosphate condition in 2016

source_name: Leaf blade, Nipponbare, 28 days after transplanting, high available phosphate, 2016

value: 28 days after transplanting


title: LeafBlade_Nipponbare_62DAT_LP_2015

description: Gene expression of leaf blade of Nipponbare at 62 days after transplanting under low available phosphate condition in 2015

source_name: Leaf blade, Nipponbare, 62 days after transplanting, low available phosphate, 2015

value: 62 days after transplanting


title: LeafBlade_Nipponbare_69DAT_LP_2015

description: Gene expression of leaf blade of Nipponbare at 69 days after transplanting under low available phosphate condition in 2015

source_name: Leaf blade, Nipponbare, 69 days after transplanting, low available phosphate, 2015

value: 69 days after transplanting


title: LeafBlade_Nipponbare_28DAT_LP_2016

description: Gene expression of leaf blade of Nipponbare at 28 days after transplanting under low available phosphate condition in 2016

source_name: Leaf blade, Nipponbare, 28 days after transplanting, low available phosphate, 2016


title: LeafBlade_Nipponbare_41DAT_HP_2015

description: Gene expression of leaf blade of Nipponbare at 41 days after transplanting under high available phosphate condition in 2015

source_name: Leaf blade, Nipponbare, 41 days after transplanting, high available phosphate, 2015

value: 41 days after transplanting


title: LeafBlade_Nipponbare_20DAT_HP_2014

description: Gene expression of leaf blade of Nipponbare at 20 days after transplanting under high available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 20 days after transplanting, high available phosphate, 2014

value: Nipponbare

value: 20 days after transplanting


title: LeafBlade_Nipponbare_69DAT_HP_2014

description: Gene expression of leaf blade of Nipponbare at 69 days after transplanting under high available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 69 days after transplanting, high available phosphate, 2014

value: Leaf blade


title: LeafBlade_Nipponbare_55DAT_HP_2014

description: Gene expression of leaf blade of Nipponbare at 55 days after transplanting under high available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 55 days after transplanting, high available phosphate, 2014

value: 55 days after transplanting

value: high available phosphate


title: LeafBlade_Nipponbare_41DAT_HP_2014

description: Gene expression of leaf blade of Nipponbare at 41 days after transplanting under high available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 41 days after transplanting, high available phosphate, 2014


title: LeafBlade_Nipponbare_76DAT_HP_2014

description: Gene expression of leaf blade of Nipponbare at 76 days after transplanting under high available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 76 days after transplanting, high available phosphate, 2014

value: 76 days after transplanting


title: LeafBlade_Nipponbare_14DAT_LP_2015

description: Gene expression of leaf blade of Nipponbare at 14 days after transplanting under low available phosphate condition in 2015

source_name: Leaf blade, Nipponbare, 14 days after transplanting, low available phosphate, 2015

value: 14 days after transplanting

value: low available phosphate


title: LeafBlade_Nipponbare_34DAT_HP_2014

description: Gene expression of leaf blade of Nipponbare at 34 days after transplanting under high available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 34 days after transplanting, high available phosphate, 2014


title: LeafBlade_Nipponbare_28DAT_LP_2015

description: Gene expression of leaf blade of Nipponbare at 28 days after transplanting under low available phosphate condition in 2015

source_name: Leaf blade, Nipponbare, 28 days after transplanting, low available phosphate, 2015


title: LeafBlade_Nipponbare_22DAT_LP_2015

description: Gene expression of leaf blade of Nipponbare at 22 days after transplanting under low available phosphate condition in 2015

source_name: Leaf blade, Nipponbare, 22 days after transplanting, low available phosphate, 2015

value: 22 days after transplanting


title: LeafBlade_Nipponbare_76DAT_LP_2015

description: Gene expression of leaf blade of Nipponbare at 76 days after transplanting under low available phosphate condition in 2015

source_name: Leaf blade, Nipponbare, 76 days after transplanting, low available phosphate, 2015


title: LeafBlade_Nipponbare_55DAT_LP_2015

description: Gene expression of leaf blade of Nipponbare at 55 days after transplanting under low available phosphate condition in 2015

source_name: Leaf blade, Nipponbare, 55 days after transplanting, low available phosphate, 2015


title: LeafBlade_Nipponbare_61DAT_LP_2014

description: Gene expression of leaf blade of Nipponbare at 61 days after transplanting under low available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 61 days after transplanting, low available phosphate, 2014

value: 61 days after transplanting


title: LeafBlade_Nipponbare_27DAT_HP_2014

description: Gene expression of leaf blade of Nipponbare at 27 days after transplanting under high available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 27 days after transplanting, high available phosphate, 2014

value: 27 days after transplanting


title: LeafBlade_Nipponbare_48DAT_HP_2014

description: Gene expression of leaf blade of Nipponbare at 48 days after transplanting under high available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 48 days after transplanting, high available phosphate, 2014

value: 48 days after transplanting


title: LeafBlade_Nipponbare_68DAT_LP_2014

description: Gene expression of leaf blade of Nipponbare at 68 days after transplanting under low available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 68 days after transplanting, low available phosphate, 2014

value: 68 days after transplanting


title: LeafBlade_Nipponbare_35DAT_LP_2015

description: Gene expression of leaf blade of Nipponbare at 35 days after transplanting under low available phosphate condition in 2015

source_name: Leaf blade, Nipponbare, 35 days after transplanting, low available phosphate, 2015

value: 35 days after transplanting


title: LeafBlade_Nipponbare_42DAT_LP_2015

description: Gene expression of leaf blade of Nipponbare at 42 days after transplanting under low available phosphate condition in 2015

source_name: Leaf blade, Nipponbare, 42 days after transplanting, low available phosphate, 2015

value: 42 days after transplanting


title: LeafBlade_Nipponbare_48DAT_LP_2015

description: Gene expression of leaf blade of Nipponbare at 48 days after transplanting under low available phosphate condition in 2015

source_name: Leaf blade, Nipponbare, 48 days after transplanting, low available phosphate, 2015


title: LeafBlade_Nipponbare_75DAT_LP_2014

description: Gene expression of leaf blade of Nipponbare at 75 days after transplanting under low available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 75 days after transplanting, low available phosphate, 2014

value: 75 days after transplanting


title: LeafBlade_Nipponbare_54DAT_LP_2014

description: Gene expression of leaf blade of Nipponbare at 54 days after transplanting under low available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 54 days after transplanting, low available phosphate, 2014

value: 54 days after transplanting


title: LeafBlade_Nipponbare_62DAT_HP_2014

description: Gene expression of leaf blade of Nipponbare at 62 days after transplanting under high available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 62 days after transplanting, high available phosphate, 2014

value: Nipponbare

value: 62 days after transplanting


title: SFB_SI_CitroD6_RNAseq_rep1

type: SRA

city: Cincinnati

first: Theresa

last: Alenghat

state: OH

address: 3333 Burnet Ave

country: USA

institute: Cincinnati Children's Hospital Medical Center

description: Intestinal epithelial cells harvested from the intestine of C57BL/6 mice  housed in SFB monocolonized conditionsinfected with C.rodentium Day 6

library_source: transcriptomic

data_processing:
Sequence reads were aligned to the mm10 genome using the Illumina sequence analysis pipeline.
RPKM were computed from aligned reads and baselined to the median across all samples.
Genome_build: mm10
Supplementary_files_format_and_content: text files with RPKM for each transcript across each sample

organism: Mus musculus

source_name: Intestinal epithelial cells

growth_protocol: C57Bl/6J germ-free mice were maintained in plastic isolators, fed autoclaved feed and water, and monitored to ensure absence of microbes.

extract_protocol:
Intestinal epithelial cell were harvested from mouse intestine and RNA was isolated using the RNeasy Kit (Qiagen) according to manufacturer's instructions
Directional polyA RNAseq according to standard Illumina protocols

treatment_protocol: Mice were orally gavaged with 10^9 CFU of C.rodentium

tag: strain

tag: conditions

value: SFB monocolonized

tag: infection day

value: C.rodentium Day 6


title: LeafBlade_Nipponbare_40DAT_LP_2014

description: Gene expression of leaf blade of Nipponbare at 40 days after transplanting under low available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 40 days after transplanting, low available phosphate, 2014

value: Leaf blade

value: 40 days after transplanting


title: GF_SI_CitroD6_RNAseq_rep3

description: Intestinal epithelial cells harvested from the intestine of C57BL/6 mice  housed in germ free conditionsinfected with C.rodentium Day 6

value: germ free


title: GF_SI_CitroD6_RNAseq_rep1


title: LeafBlade_Nipponbare_19DAT_LP_2014

description: Gene expression of leaf blade of Nipponbare at 19 days after transplanting under low available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 19 days after transplanting, low available phosphate, 2014

value: 19 days after transplanting

value: low available phosphate


title: LeafBlade_Nipponbare_26DAT_LP_2014

description: Gene expression of leaf blade of Nipponbare at 26 days after transplanting under low available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 26 days after transplanting, low available phosphate, 2014

value: 26 days after transplanting


title: GF_SI_CitroD6_RNAseq_rep2


title: LeafBlade_Nipponbare_13DAT_HP_2014

description: Gene expression of leaf blade of Nipponbare at 13 days after transplanting under high available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 13 days after transplanting, high available phosphate, 2014

value: 13 days after transplanting

value: high available phosphate


title: SFB_SI_CitroD6_RNAseq_rep3


title: SFB_SI_CitroD6_RNAseq_rep4


title: LeafBlade_Nipponbare_47DAT_LP_2014

description: Gene expression of leaf blade of Nipponbare at 47 days after transplanting under low available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 47 days after transplanting, low available phosphate, 2014

value: 47 days after transplanting


title: SFB_H3K27Ac_rep2

description:
Intestinal epithelial cells harvested from the intestine of C57BL/6 mice  housed in SFB monocolonized conditions
SFB_H3K27Ac_peaksannotated.txt

library_source: genomic

data_processing:
Raw reads were mapped to the mm10 genome usign Bowtie.
MACS2 was use for peak calling and differential peak detection.
Data were visualized and analyzed using BioWardrobe.
Genome_build: mm10
Supplementary_files_format_and_content: text file with peak identification

molecule: genomic DNA

extract_protocol:
Nuclear lysates were sonicated and histone-chromatin complexes were immunoprecipitated with an H3K27Ac antibody.
Libraries were prepared with the ThruPLEX DNA-seq kit (Rubicon) and sequenced on an Illumina HiSeq 2000 sequencing system (Sequencing depth: 20 million reads, sequencing condition: single-end, 50bp)

tag: chip antibody

value: H3K27Ac (Abcam:ab4729)


title: LeafBlade_Nipponbare_63DAT_LP_2012

description: Gene expression of leaf blade of Nipponbare at 63 days after transplanting under low available phosphate condition in 2012

source_name: Leaf blade, Nipponbare, 63 days after transplanting, low available phosphate, 2012

value: 63 days after transplanting


title: SFB_SI_CitroD6_RNAseq_rep2


title: LeafBlade_Nipponbare_56DAT_LP_2012

description: Gene expression of leaf blade of Nipponbare at 56 days after transplanting under low available phosphate condition in 2012

source_name: Leaf blade, Nipponbare, 56 days after transplanting, low available phosphate, 2012

value: 56 days after transplanting


title: LeafBlade_Nipponbare_33DAT_LP_2014

description: Gene expression of leaf blade of Nipponbare at 33 days after transplanting under low available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 33 days after transplanting, low available phosphate, 2014

value: 33 days after transplanting


title: LeafBlade_Nipponbare_28DAT_LP_2012

description: Gene expression of leaf blade of Nipponbare at 28 days after transplanting under low available phosphate condition in 2012

source_name: Leaf blade, Nipponbare, 28 days after transplanting, low available phosphate, 2012

value: Nipponbare

value: 28 days after transplanting


title: SFB_H3K27Ac_rep1

value: SFB monocolonized


title: LeafBlade_Nipponbare_70DAT_LP_2012

description: Gene expression of leaf blade of Nipponbare at 70 days after transplanting under low available phosphate condition in 2012

source_name: Leaf blade, Nipponbare, 70 days after transplanting, low available phosphate, 2012

value: 70 days after transplanting


title: LeafBlade_Nipponbare_84DAT_LP_2012

description: Gene expression of leaf blade of Nipponbare at 84 days after transplanting under low available phosphate condition in 2012

source_name: Leaf blade, Nipponbare, 84 days after transplanting, low available phosphate, 2012

value: Leaf blade

value: 84 days after transplanting


title: LeafBlade_Nipponbare_49DAT_LP_2012

description: Gene expression of leaf blade of Nipponbare at 49 days after transplanting under low available phosphate condition in 2012

source_name: Leaf blade, Nipponbare, 49 days after transplanting, low available phosphate, 2012

value: 49 days after transplanting


title: GF_H3K27Ac_rep2

description:
Intestinal epithelial cells harvested from the intestine of C57BL/6 mice  housed in germ free conditions
GF_H3K27Ac_peaksannotated.txt

value: germ free


title: LeafBlade_Nipponbare_77DAT_LP_2012

description: Gene expression of leaf blade of Nipponbare at 77 days after transplanting under low available phosphate condition in 2012

source_name: Leaf blade, Nipponbare, 77 days after transplanting, low available phosphate, 2012

value: 77 days after transplanting

value: low available phosphate


title: LeafBlade_Nipponbare_21DAT_LP_2012

description: Gene expression of leaf blade of Nipponbare at 21 days after transplanting under low available phosphate condition in 2012

source_name: Leaf blade, Nipponbare, 21 days after transplanting, low available phosphate, 2012

value: 21 days after transplanting


title: LeafBlade_Nipponbare_12DAT_LP_2014

description: Gene expression of leaf blade of Nipponbare at 12 days after transplanting under low available phosphate condition in 2014

source_name: Leaf blade, Nipponbare, 12 days after transplanting, low available phosphate, 2014

value: 12 days after transplanting


title: LeafBlade_Nipponbare_35DAT_LP_2012

description: Gene expression of leaf blade of Nipponbare at 35 days after transplanting under low available phosphate condition in 2012

source_name: Leaf blade, Nipponbare, 35 days after transplanting, low available phosphate, 2012

value: 35 days after transplanting


title: GF_H3K27Ac_rep1

source_name: Intestinal epithelial cells

value: H3K27Ac (Abcam:ab4729)


title: ET_Sperm_ATACseq_Rep1

city: Atlanta

first: Yoonhee

last: Jung

state: Georgia

address: 615 Michael Street

department: Human Genetics

institute: Emory university

data_processing:
All libraries were sequenced using an Illumina Hiseq v4 sequencer and 50 bp paired-end format. Paired reads were aligned to mouse reference genome mm10 using Bowtie2.  ATAC-seq reads were aligned using default parameters except -X 2000 -m 1. Duplicates were removed using Samtools.  To adjust for fragment size, we aligned all reads as + strands offset by +4 bp and – strands offset by -5 bp (Buenrostro et al. 2013). To separate nucleosome-free (THSS)  and  mono-nucleosome (Nucleosome) fragments, we chose reads 50-115 bp 180-247 bp in length, respectively.MACS was used for peak calling with nucleosome-free reads (Liu 2014). For generating wiggle files, we combined each replicates.
Genome_build: mm10 (GRCm38)

source_name: Sperm

extract_protocol:
The nuclei from 50,000 cells were isolated with Lysis Buffer (10 mM Tris-HCl pH 7.4, 10 mM NaCl, 3mM MgCl2) containing 0.1% NP40, 0.1% Tween-20, and 0.01% Digitonin. Purified nuclei pellet was then resuspended in the transposase reaction mix containing 0.05% digitonin and incubated for 30 min at 37°C. Following incubation, cells  were treated with Proteinase K at 55°C for 2 hr, and gDNA was isolated by phenol:chloroform:isoamyl alcohol and EtOH precipitation.
Library amplification was done with 2x KAPA HiFi mix and 1.25 µM indexed primers using the following PCR conditions: 72°C for 5 min; 98°C for 30 s; and 10-11 cycles at 98°C for 10 s, 63°C for 30 s, and 72°C for 1 min.

tag: strain background

tag: Sex

value: Male

tag: tissue

value: Sperm


title: ET_Sperm_ATACseq_Rep2


title: LeafBlade_Nipponbare_42DAT_LP_2012

description: Gene expression of leaf blade of Nipponbare at 42 days after transplanting under low available phosphate condition in 2012

source_name: Leaf blade, Nipponbare, 42 days after transplanting, low available phosphate, 2012

value: 42 days after transplanting


title: CTL_GVoocyte_ATACseq_Rep1

data_processing:
All libraries were sequenced using an Illumina Hiseq v4 sequencer and 50 bp paired-end format. Paired reads were aligned to mouse reference genome mm10 using Bowtie2. ATAC-seq reads were aligned using default parameters except -X 2000 -m 1. Duplicates were removed using Samtools. To adjust for fragment size, we aligned all reads as + strands offset by +4 bp and – strands offset by -5 bp (Buenrostro et al. 2013). To separate nucleosome-free (THSS) and mono-nucleosome (Nucleosome) fragments, we chose reads 50-115 bp 180-247 bp in length, respectively. Mono-nucleosome reads were analyzed using DANPOS2 (Chen et al. 2013). MACS was used for peak calling with nucleosome-free reads (Liu 2014). For generating wiggle files, we combined each replicates.
Genome_build: mm10 (GRCm38)
Supplementary_files_format_and_content: bigWig files

source_name: GV oocyte

extract_protocol:
After sperm cells were counted, the nuclei from 100,000 sperm were isolated with Lysis Buffer (10 mM Tris-HCl pH 7.4, 10 mM NaCl, 3mM MgCl2) containing 0.1% NP40, 0.1% Tween-20, and 0.01% Digitonin. Purified sperm nuclei pellet was then resuspended in the transposase reaction mix containing 0.05% digitonin and incubated for 30 min at 37°C. Following incubation, sperm were treated with Proteinase K at 55°C for 2 hr, and gDNA was isolated by phenol:chloroform:isoamyl alcohol and EtOH precipitation.
Library amplification was done with 2x KAPA HiFi mix and 1.25 µM indexed primers using the following PCR conditions: 72°C for 5 min; 98°C for 30 s; and 10-11 cycles at 98°C for 10 s, 63°C for 30 s, and 72°C for 1 min.

value: Female

value: GV oocyte

tag: treatment

value: Control


title: BPA-F2_GVoocyte_ATACseq_Rep2

value: Bisphenol A (BPA)


title: CTL_GVoocyte_ATACseq_Rep2


title: BPA-F5_Sperm_ATACseq_Rep2


title: BPA-F6_Sperm_BSseq_Rep1

data_processing:
All libraries were sequenced using an Illumina Hiseq v4 sequencer and 50 bp paired-end format. Paired reads were aligned to mouse reference genome mm10 using Bismark for BS-seq. For generating bigwig files, we combined each replicates.
Genome_build: mm10 (GRCm38)
Supplementary_files_format_and_content: bigWig files

extract_protocol:
For BS-seq, genomic DNA (1-2 µg) spiked with 0.5% unmethylated lambda genomic DNA (Promega) were sheared with a Diagenode Bioruptor to yield DNA fragments ranging from 200 to 500 bp. After purification of the fragmented DNA using phenol/chloroform, DNA fragments were end repaired, A-tailed, and ligated to methylated Illumina adaptors using as described for ChIP-seq. The EpiTect Bisulfite kit (QIAGEN, Cat. No. 59104) was used for bisulfite conversion and subsequent purification according to the manufacturer’s instructions.
Libraries for Illumina sequencing were constructed using the following standard protocol. The fragment end were repaired using the NEBNext End Repair Module, and adenosine was added at the 3’ ends of fragment using Klenow fragment (3’ to 5’ exo minus, New England Biolabs). Precipitated DNA and input DNA were incubated with adaptors at room temperature for 1 hr with T4 DNA ligase (New England Biolabs) and amplified with Illumina primers.


title: CTL_Sperm_BSseq_Rep2


title: CTL_Sperm_BSseq_Rep1


title: BPA-F6_Sperm_BSseq_Rep2


title: BPA-F3_Sperm_BSseq_Rep1


title: BPA-F3_Sperm_BSseq_Rep2


title: BPA-F2_Sperm_ATACseq_Rep2


title: BPA-F2_GVoocyte_ATACseq_Rep1


title: BPA-F6_Sperm_ATACseq_Rep1


title: BPA-F5_Sperm_ATACseq_Rep1


title: BPA-F3_Sperm_ATACseq_Rep2


title: BPA-F1_Sperm_ATACseq_Rep2


title: BPA-F2_Sperm_ATACseq_Rep1


title: BPA_Sperm_RNAseq_Rep1

description:
processed data file: BPA_Sperm_RNAseq_sense.bw
processed data file: BPA_Sperm_RNAseq_antisense.bw

data_processing:
All libraries were sequenced using an Illumina Hiseq v4 sequencer and 150 bp paired-end format. Paired reads were aligned to mouse reference genome mm9 using STAR Aligner. For generating bigwig files, we combined each replicates.
Genome_build: mm9 (MGSCv37)
Supplementary_files_format_and_content: bigWig files

extract_protocol: Total RNA was extracted from adult mouse sperm (8-10wks) using Trizol (Invitrogen). First, ribosomal RNA was removed using an rRNA Removal kit. Second, sequencing libraries were generated using the Illumina TruSeq RNA Sample Preparation kit (Illumina, CA, USA) according to the manufacturer’s recommendations.

tag: age

value: 8-10 weeks


title: BPA-F6_Sperm_ATACseq_Rep2


title: BPA-F4_Sperm_ATACseq_Rep2


title: BPA-F4_Sperm_ATACseq_Rep1


title: BPA-F3_Sperm_ATACseq_Rep1


title: BPA-F1_Sperm_ATACseq_Rep1


title: CTL_Sperm_RNAseq_Rep2

description:
processed data file: CTL_Sperm_RNAseq_sense.bw
processed data file: CTL_Sperm_RNAseq_antisense.bw


title: BPA_Sperm_RNAseq_Rep2


title: CTL_Sperm_RNAseq_Rep1


title: LeafBlade_Nipponbare_68DAT_HP_2015

description: Gene expression of leaf blade of Nipponbare at 68 days after transplanting under high available phosphate condition in 2015

source_name: Leaf blade, Nipponbare, 68 days after transplanting, high available phosphate, 2015

value: Nipponbare

value: Leaf blade

value: 68 days after transplanting

value: high available phosphate


title: PatientID:655 visit: I-WEEK 0

city: Spring House

first: Patrick

last: Branigan

state: PA

address: 1400 McKean Road

institute: Johnson and Johnson

description:
WB-mRNA
Gene expression data from WB-RNA
XZ990754_17

hyb_protocol: standard Affymetrix protocol

scan_protocol: standard Affymetrix protocol

data_processing: RMA expression measure was computed from CEL files interpreted through Brainarray custom CDF pd.hugene21st.hs.entrezg

label: biotin

organism: Homo sapiens

source_name: Homo sapiens, WB-mRNA

label_protocol: standard Affymetrix protocol

extract_protocol: mRNA was extracted from whole blood collected in PAXgene tubes according to the manufacturer's instructions.

treatment_protocol: Patients received a single intravenous dose of ustekinumab or placebo at week 0 and blood samples were collected at week 0, week 6 and week 8

tag: patientid

tag: visit

value: I-WEEK 0

value: Placebo

tag: remwk8_i (clinical_remission_week_8)

value: N

tag: crp


title: PatientID:929 visit: I-WEEK 0

description:
WB-mRNA
Gene expression data from WB-RNA
XZ993074_16

value: Ustekinumab


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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:558 visit: I-WEEK 6

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:577 visit: I-WEEK 0

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:168 visit: M-WEEK 8

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:558 visit: I-WEEK 0

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WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:551 visit: I-WEEK 6

description:
WB-mRNA
Gene expression data from WB-RNA
XT305904_12


title: PatientID:492 visit: M-WEEK 8

description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:331 visit: I-WEEK 6

description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:732 visit: M-WEEK 8

description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:322 visit: I-WEEK 6

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:154 visit: M-WEEK 8

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:413 visit: I-WEEK 6

description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:450 visit: M-WEEK 8

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:167 visit: M-WEEK 8

description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:179 visit: M-WEEK 8

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WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:145 visit: M-WEEK 8

description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:378 visit: M-WEEK 8

description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:227 visit: I-WEEK 6

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:303 visit: M-WEEK 8

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:221 visit: M-WEEK 8

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:163 visit: M-WEEK 8

description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:232 visit: I-WEEK 6

description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:423 visit: M-WEEK 8

description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:152 visit: M-WEEK 8

description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:42 visit: I-WEEK 0

description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:65 visit: I-WEEK 0

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:318 visit: I-WEEK 0

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:361 visit: I-WEEK 0

description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:89 visit: I-WEEK 0

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:88 visit: I-WEEK 0

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:557 visit: I-WEEK 0

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:671 visit: I-WEEK 0

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:157 visit: I-WEEK 0

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:229 visit: I-WEEK 0

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:139 visit: M-WEEK 8

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:671 visit: I-WEEK 6

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:199 visit: M-WEEK 8

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:148 visit: M-WEEK 8

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:703 visit: I-WEEK 6

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:557 visit: I-WEEK 6

description:
WB-mRNA
Gene expression data from WB-RNA
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title: PatientID:685 visit: I-WEEK 6

description:
WB-mRNA
Gene expression data from WB-RNA
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