title: Atopic Mother 0107M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 68


title: 3mix-timelapse, 3mix-timelapse-plate6_82

status: Public on Dec 15 2022

type: SRA

city: Suita

first: Katsuyuki

last: Shiroguchi

state: Osaka

address: 6-2-3 Furuedai

department: Center for Biosystems Dynamics Research (BDR)

country: Japan

institute: RIKEN

description:
3mix-timelapse-plate6_82
3mix_RNA_expression.txt

library_source: transcriptomic

data_processing:
Basecalls performed by Illumina MiSeq or Hiseq
Sequenced reads were trimmed for adaptor sequence, and were sorted by indexes in Illumina MiSeq or using bcl2fastq for Illumina Hiseq resultes
Reads were aligned to the mm10 genome assebly using STAR
Mapped reads seperated by genes, and the reads mapped for each gene were clusterd by molecular barcode
The number of cluteres for each gene was counted, which provides the number of molecules detected for each gene
Genome_build: mm10
Supplementary_files_format_and_content: The calculated copy number of RNA molecules per cell for each gene is listed (cells which were not filtered out are shown).

molecule: total RNA

organism: Mus musculus

source_name: Cell line mixture of murine T cell, murine leukemia cell, and murine hematopoietic progenitor cell

extract_protocol:
RNAs from cell lysate in each well was directly used for library preparation without purification
Libraries were prepared by using molecular barcoding technique. First, for control, the same amount of spike-in RNAs, a known number of External RNA Controls Consortium (ERCC) RNA molecules, was added into every tube which contains an isolated cell. Then, the cells were lysed and RNA molecules were fragmentated by temperature elevation. cDNAs were generated by reverse transcription using a reverse transcription primer, in which the first common primer sequence, molecular barcode, fourteen T bases, and one V (A or G or C) base are tandemly arranged from 5' end. In the reverse transcription, the second common primer sequence was also attached to 3' end of each generated cDNA molecule by template switching. Subsequently, cDNAs were amplified by PCR using two primers; one primer contains an illumina adapter sequence, sample index, and the first common primer sequence, and the other primer has another illumina adapter sequence, sample index, and the second common primer sequence.

treatment_protocol: Murine T cells, leukemia cells, hematopoietic progenitor cells, and PBMCs were isolated by ALPS or FACS

tag: strain

tag: cell type

value: random selection

tag: isolation method

value: ALPS


title: Non-Atopic Mother 0108M

type: genomic

city: Denver

first: Sonia

middle: M

last: Leach

state: Colorado

address: 1400 Jackson St

country: USA

institute: National Jewish Health

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 69

hyb_protocol: Genomic DNA was sheared, McrBC digested and gel fractionated before labeling and hybridization onto arrays covering 2.1M CpG sites according to CHARM protocol (Ladd-Acosta et al. 2010 PMID:20373514)

scan_protocol: Hybridized microarrays were scanned on an Agilent microarray scanner (Agilent, Santa Clara, CA) and images were processed in the Feature Extraction software (Agilent, Santa Clara, CA).

data_processing:
Probe-level estimates of percentage DNA methylation, known as methp values, were generated with the Charm v2.18.0 package in the R Statistical Computing language v2.15.1, using the options of quantile normalization for between-sample normalization and removing control probes and probes with a mean pmQuality measure lower than 75
Hauk_GEO_AtopicMothers_methp.txt: Percent methylation value represented as the normalized (range 0-1) log-ratio of the intensities observed in McrBC-treated and untreated channels (methp values).
Probe-level estimates of percentage DNA methylation, known as methp values, were generated with the Charm v2.18.0 package in the R Statistical Computing language v2.15.1, using the options of quantile normalization for between-sample normalization and removing control probes and probes with a mean pmQuality measure lower than 75. The Probabilistic Estimation of Expression Residual (PEER) (Stegle et al, 2012) method was applied to raw methp values to estimate hidden confounding factors, with the option batch_correct=4, using the peer v1.3 package in R and subtracted from the raw methp values. This dataset can then be directly used in linear mixed models with other clinical variables.
Hauk_GEO_AtopicMothers_methp_4PEERfactorsSubtracted.txt: Percent methylation value represented as the normalized log-ratio of the intensities observed in McrBC-treated and untreated channels, corrected for latent factors by subtracting the four PEER factors (range -1 to 1).

molecule: genomic DNA

organism: Homo sapiens

source_name: input fraction of DNA from whole blood

extract_protocol: Genomic DNA was obtained from maternal whole blood at a gestational age of >= 34 weeks with PAXgene DNA tubes according to the manufacturer's instructions (Qiagen, Hilden, Germany).

tag: dna fraction

value: input

tag: parental history of atopy (maternal or biparental)

value: Non-Atopic

tag: maternal age at delivery

tag: exposure during pregnancy to inside/outside smoking and or animals

value: No

tag: maternal ethnicity

value: hisp

tag: child ethnicity

tag: maternal exposure to insulin

tag: maternal exposure to folic acid in addition to dietary folate and folate in prenatal vitamins

source_name: Methyl-depleted fraction of DNA from whole blood

value: methyl-depleted


title: Atopic Mother 0111M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 71

label_protocol: Genomic DNA was sheared, McrBC digested and gel fractionated before labeling and hybridization onto arrays covering 2.1M CpG sites according to CHARM protocol (Ladd-Acosta et al. 2010 PMID:20373514)

value: Atopic

value: Yes

value: cauc


title: Atopic Mother 0105M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 67


title: Atopic Mother 0120M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 77

value: othe

value: asian


title: 3mix-timelapse, 3mix-timelapse-plate6_79

description:
3mix-timelapse-plate6_79
3mix_RNA_expression.txt


title: Atopic Mother 0103M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 66


title: 3mix-timelapse, 3mix-timelapse-plate6_78

description:
3mix-timelapse-plate6_78
3mix_RNA_expression.txt


title: Non-Atopic Mother 0122M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 78


title: 3mix-timelapse, 3mix-timelapse-plate6_77

description:
3mix-timelapse-plate6_77
3mix_RNA_expression.txt


title: Non-Atopic Mother 0102M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 65

value: mixed, other


title: 3mix-timelapse, 3mix-timelapse-plate6_76

description:
3mix-timelapse-plate6_76
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_75

description:
3mix-timelapse-plate6_75
3mix_RNA_expression.txt


title: Atopic Mother 0097M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 64


title: Non-Atopic Mother 0095M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 63


title: 3mix-timelapse, 3mix-timelapse-plate6_74

description:
3mix-timelapse-plate6_74
3mix_RNA_expression.txt


title: Atopic Mother 0093M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 61

value: AA


title: 3mix-timelapse, 3mix-timelapse-plate6_72

description:
3mix-timelapse-plate6_72
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_73

description:
3mix-timelapse-plate6_73
3mix_RNA_expression.txt


title: Atopic Mother 0094M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 62


title: 3mix-timelapse, 3mix-timelapse-plate6_71

description:
3mix-timelapse-plate6_71
3mix_RNA_expression.txt


title: Atopic Mother 0113M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 72


title: Atopic Mother 0092M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 60


title: Non-Atopic Mother 0091M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 59


title: Atopic Mother 0109M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 70


title: 3mix-timelapse, 3mix-timelapse-plate6_70

description:
3mix-timelapse-plate6_70
3mix_RNA_expression.txt


title: Non-Atopic Mother 0089M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 58


title: 3mix-timelapse, 3mix-timelapse-plate6_68

description:
3mix-timelapse-plate6_68
3mix_RNA_expression.txt


title: Atopic Mother 0088M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 57


title: Non-Atopic Mother 0086M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 56


title: Non-Atopic Mother 0084M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 55


title: 3mix-timelapse, 3mix-timelapse-plate6_67

description:
3mix-timelapse-plate6_67
3mix_RNA_expression.txt


title: Atopic Mother 0083M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 54


title: 3mix-timelapse, 3mix-timelapse-plate6_65

description:
3mix-timelapse-plate6_65
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_64

description:
3mix-timelapse-plate6_64
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_66

description:
3mix-timelapse-plate6_66
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_62

description:
3mix-timelapse-plate6_62
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_63

description:
3mix-timelapse-plate6_63
3mix_RNA_expression.txt


title: Atopic Mother 0081M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 52


title: Non-Atopic Mother 0082M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 53


title: Non-Atopic Mother 0080M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 51


title: Non-Atopic Mother 0079M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 50


title: 3mix-timelapse, 3mix-timelapse-plate6_61

description:
3mix-timelapse-plate6_61
3mix_RNA_expression.txt


title: Atopic Mother 0078M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 49


title: 3mix-timelapse, 3mix-timelapse-plate6_60

description:
3mix-timelapse-plate6_60
3mix_RNA_expression.txt


title: Non-Atopic Mother 0077M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 48


title: 3mix-timelapse, 3mix-timelapse-plate6_58

description:
3mix-timelapse-plate6_58
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_57

description:
3mix-timelapse-plate6_57
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_56

description:
3mix-timelapse-plate6_56
3mix_RNA_expression.txt


title: Atopic Mother 0075M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 46


title: Atopic Mother 0074M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 45


title: 3mix-timelapse, 3mix-timelapse-plate6_69

description:
3mix-timelapse-plate6_69
3mix_RNA_expression.txt


title: Non-Atopic Mother 0073M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 44


title: 3mix-timelapse, 3mix-timelapse-plate6_55

description:
3mix-timelapse-plate6_55
3mix_RNA_expression.txt


title: Non-Atopic Mother 0072M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 43


title: Non-Atopic Mother 0071M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 42


title: 3mix-timelapse, 3mix-timelapse-plate6_52

description:
3mix-timelapse-plate6_52
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_51

description:
3mix-timelapse-plate6_51
3mix_RNA_expression.txt


title: Atopic Mother 0069M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 40


title: Atopic Mother 0070M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 41


title: 3mix-timelapse, 3mix-timelapse-plate6_50

description:
3mix-timelapse-plate6_50
3mix_RNA_expression.txt


title: Atopic Mother 0066M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 39


title: Non-Atopic Mother 0065M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 38


title: 3mix-timelapse, 3mix-timelapse-plate6_53

description:
3mix-timelapse-plate6_53
3mix_RNA_expression.txt


title: Atopic Mother 0062M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 37


title: 3mix-timelapse, 3mix-timelapse-plate6_48

description:
3mix-timelapse-plate6_48
3mix_RNA_expression.txt


title: Atopic Mother 0061M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 36


title: 3mix-timelapse, 3mix-timelapse-plate6_59

description:
3mix-timelapse-plate6_59
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_47

description:
3mix-timelapse-plate6_47
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_46

description:
3mix-timelapse-plate6_46
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_49

description:
3mix-timelapse-plate6_49
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_45

description:
3mix-timelapse-plate6_45
3mix_RNA_expression.txt


title: Atopic Mother 0059M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 34


title: Atopic Mother 0076M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 47


title: Non-Atopic Mother 0060M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 35


title: Non-Atopic Mother 0055M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 33


title: 3mix-timelapse, 3mix-timelapse-plate6_44

description:
3mix-timelapse-plate6_44
3mix_RNA_expression.txt


title: Atopic Mother 0053M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 32


title: 3mix-timelapse, 3mix-timelapse-plate6_43

description:
3mix-timelapse-plate6_43
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_54

description:
3mix-timelapse-plate6_54
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_42

description:
3mix-timelapse-plate6_42
3mix_RNA_expression.txt


title: Atopic Mother 0052M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 31


title: Atopic Mother 0051M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 30


title: 3mix-timelapse, 3mix-timelapse-plate6_41

description:
3mix-timelapse-plate6_41
3mix_RNA_expression.txt


title: Non-Atopic Mother 0050M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 29


title: 3mix-timelapse, 3mix-timelapse-plate6_40

description:
3mix-timelapse-plate6_40
3mix_RNA_expression.txt


title: Atopic Mother 0049M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 28


title: Non-Atopic Mother 0048M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 27


title: 3mix-timelapse, 3mix-timelapse-plate6_39

description:
3mix-timelapse-plate6_39
3mix_RNA_expression.txt


title: Atopic Mother 0047M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 26


title: 3mix-timelapse, 3mix-timelapse-plate6_37

description:
3mix-timelapse-plate6_37
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_38

description:
3mix-timelapse-plate6_38
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_35

description:
3mix-timelapse-plate6_35
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_34

description:
3mix-timelapse-plate6_34
3mix_RNA_expression.txt


title: Atopic Mother 0039M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 24


title: 3mix-timelapse, 3mix-timelapse-plate6_33

description:
3mix-timelapse-plate6_33
3mix_RNA_expression.txt


title: Atopic Mother 0045M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 25


title: Atopic Mother 0038M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 23


title: Atopic Mother 0034M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 21


title: Atopic Mother 0030M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 19


title: Atopic Mother 0036M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 22


title: 3mix-timelapse, 3mix-timelapse-plate6_31

description:
3mix-timelapse-plate6_31
3mix_RNA_expression.txt


title: Non-Atopic Mother 0026M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 18


title: 3mix-timelapse, 3mix-timelapse-plate6_29

description:
3mix-timelapse-plate6_29
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_27

description:
3mix-timelapse-plate6_27
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_28

description:
3mix-timelapse-plate6_28
3mix_RNA_expression.txt


title: Atopic Mother 0021M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 16


title: 3mix-timelapse, 3mix-timelapse-plate6_26

description:
3mix-timelapse-plate6_26
3mix_RNA_expression.txt


title: Atopic Mother 0020M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 15


title: 3mix-timelapse, 3mix-timelapse-plate6_25

description:
3mix-timelapse-plate6_25
3mix_RNA_expression.txt


title: Atopic Mother 0017M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 13


title: 3mix-timelapse, 3mix-timelapse-plate6_24

description:
3mix-timelapse-plate6_24
3mix_RNA_expression.txt


title: Atopic Mother 0018M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 14


title: 3mix-timelapse, 3mix-timelapse-plate6_36

description:
3mix-timelapse-plate6_36
3mix_RNA_expression.txt


title: Atopic Mother 0016M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 12


title: Atopic Mother 0032M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 20


title: Non-Atopic Mother 0015M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 11


title: 3mix-timelapse, 3mix-timelapse-plate6_32

description:
3mix-timelapse-plate6_32
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_23

description:
3mix-timelapse-plate6_23
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_30

description:
3mix-timelapse-plate6_30
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_21

description:
3mix-timelapse-plate6_21
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_22

description:
3mix-timelapse-plate6_22
3mix_RNA_expression.txt


title: Non-Atopic Mother 0014M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 10


title: 3mix-timelapse, 3mix-timelapse-plate6_18

description:
3mix-timelapse-plate6_18
3mix_RNA_expression.txt


title: Atopic Mother 0011M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 8


title: Atopic Mother 0012M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 9


title: 3mix-timelapse, 3mix-timelapse-plate6_19

description:
3mix-timelapse-plate6_19
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_17

description:
3mix-timelapse-plate6_17
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_20

description:
3mix-timelapse-plate6_20
3mix_RNA_expression.txt


title: Atopic Mother 0023M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 17


title: 3mix-timelapse, 3mix-timelapse-plate6_16

description:
3mix-timelapse-plate6_16
3mix_RNA_expression.txt


title: Non-Atopic Mother 0006M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 5


title: Non-Atopic Mother 0005M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 4


title: Atopic Mother 0002M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 2


title: Non-Atopic Mother 0001M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 1


title: Non-Atopic Mother 0007M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 6


title: Non-Atopic Mother 0004M

description:
CHARM  profile of whole blood of mother of infant with no parental history of atopy
Sample 3


title: 3mix-timelapse, 3mix-timelapse-plate6_12

description:
3mix-timelapse-plate6_12
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_15

description:
3mix-timelapse-plate6_15
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_11

description:
3mix-timelapse-plate6_11
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_13

description:
3mix-timelapse-plate6_13
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_9

description:
3mix-timelapse-plate6_9
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_8

description:
3mix-timelapse-plate6_8
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_10

description:
3mix-timelapse-plate6_10
3mix_RNA_expression.txt


title: Atopic Mother 0008M

description:
CHARM  profile of whole blood of mother of infant with maternal or biparental history of atopy
Sample 7


title: 3mix-timelapse, 3mix-timelapse-plate6_7

description:
3mix-timelapse-plate6_7
3mix_RNA_expression.txt


title: H3R17me2a_Input

city: Houston

first: Yue

last: Lu

state: TX

address: 1881 East Road

department: Epigenetics & Molecular Carcinogenesis

institute: The University of Texas MD Anderson Cancer Center

library_source: genomic

data_processing:
Basecalling was done by Illumina analysis pipeline CASAVA (version 1.8.2).
For NFIB samples, sequenced DNA reads were mapped to the human genome hg19 using Illumina analysis pipeline CASAVA (version 1.8.2) and only the reads mapping to a unique position were retained.
To avoid PCR bias, only one copy for multiple reads that mapped to the same genomic position was retained for further analysis.
To obtain the NFIB peaks pulled down by each antibody, the two replicate samples were merged to a merged sample and peak calling was performed on both the merged sample and each individual replicate by MACS (version 1.4.2) using total input DNA as the negative control. The window size was set as 300 bp and the P-value cutoff was set as 1 × 10-5. The peaks overlapped with ENCODE blacklisted regions were removed.
The analysis for H3R17me2a, including mapping and peak calling, was the same as NFIB, except the mapping was done using bowtie (version 0.12.8) and the P-value cutoff for peak calling was 1 × 10-6 to control the empirical FDR below 0.05.
Assembly: hg19
Supplementary files format and content: Location of the peaks and their statistics including PeakID (ID of the peak), Chr (chromosome), Start (start position, 0-based), End (end position, 1-based), Summit (summit of the peak), PVALUE (-10*log10(pvalue) of the peak), NumTags (number tags in the peak), Fold: fold change to the control

source_name: cervix

growth_protocol: DMEM, 15% fetal bovine serum, 2mM glutamine, 1x penicillin/streptomycin. Cells were cultured at 37C at 5% CO2.

extract_protocol:
Cells were fixed with 1% formaldehyde for 10 minutes. After quenching and cell lysis, chromatin was sonicated using Biogenode Bioruptor 300.
ChIP-seq libraries were prepared using the NEB Ultra DNA library prep kit. 10 ng of DNA was used as starting material for input and ip samples. Libraries were amplified using 13 cycles on the thermocycler.

tag: tissue

value: cervix

tag: cell line

value: HeLa

value: human cervical cancer

tag: chip antibody

value: none (input)


title: H3R17me2a_ChIP

value: anti-H3R17me2a (Millipore #07-214)


title: NFIB_GFP_rep2

value: HeLa (GFP-NFIB)

value: anti-GFP (Invitrogen #A6455)


title: NFIB_GFP_rep1


title: NFIB_Input_rep1


title: 3mix-timelapse, 3mix-timelapse-plate6_5

description:
3mix-timelapse-plate6_5
3mix_RNA_expression.txt

value: random selection

value: ALPS


title: 3mix-timelapse, 3mix-timelapse-plate6_6

description:
3mix-timelapse-plate6_6
3mix_RNA_expression.txt


title: NFIB_Input_rep2


title: 3mix-timelapse, 3mix-timelapse-plate6_4

description:
3mix-timelapse-plate6_4
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate6_3

description:
3mix-timelapse-plate6_3
3mix_RNA_expression.txt


title: HeLa_NFIB_be_rep1

value: anti-NFIB (Bethyl #A303-566A)


title: HeLa_NFIB_ab_rep1

value: anti-NFIB (Abcam #ab186738)


title: 3mix-timelapse, 3mix-timelapse-plate6_14

description:
3mix-timelapse-plate6_14
3mix_RNA_expression.txt


title: HeLa_NFIB_be_rep2


title: 3mix-timelapse, 3mix-timelapse-plate6_2

description:
3mix-timelapse-plate6_2
3mix_RNA_expression.txt


title: HeLa_Input_rep2


title: 3mix-timelapse, 3mix-timelapse-plate6_1

description:
3mix-timelapse-plate6_1
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_96

description:
3mix-timelapse-plate5_96
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_95

description:
3mix-timelapse-plate5_95
3mix_RNA_expression.txt


title: Target_MEF_Idua_RESTART

city: BeiJing

first: Kai

last: Li

address: Yi He Yuan Street No.5

department: School of Life Science

country: China

institute: Peking University

data_processing:
Trim_galore (version0.6.6 http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/) for quality control and adaptor trimming. The minimum quality threshold was set to 20. The remaining reads were further processed by removing the random barcode. Processed reads were mapped to hg19 or mm10.
For CeU-seq, the data processing requires multiple input and treatment samples (including replicates) that are sequencing separately to give multiple fastq files; the processed data were calculated based on these multiple input and treatment groups data to give a single summarized table. Similarly for Target-seq, each target contains input and treatment groups that produced multiple fastq files; the processed data requires calculating the signal in both input and treatment of multiple data, and all results of all targets were summarized in a single table file.
Assembly: hg19/mm10
Library strategy: Target-seq

source_name: primary mouse embryonic fibroblast

growth_protocol: HEK293T cells and primary mouse embryonic fibroblasts (MEFs) were maintained under 5% CO2 at 37 °C in DMEM medium (Corning) supplemented with 10% FBS (Gibco) and 1% penicillin/streptomycin (Gibco). The primary human dermal fibroblasts (HDF) and primary human bronchial epithelial cells (HBE) were cultured in Fibroblast Growth Medium (iXCells, MD-0011) and Bronchial Epithelial Cell Growth Basal Medium (Lonza, CC-3171), respectively. Both media were supplemented with 1% penicillin–streptomycin. The B-Lymphocytes were cultured in 1640 (Corning) with 15% FBS and 1% penicillin–streptomycin.

extract_protocol:
Total RNA was extracted from cells using TRIzol reagent (Life Technologies). The selection of polyA(+) RNA was performed using Dynabeads™ Oligo(dT)25 (Invitrogen).
RNA-seq of transfected HEK293T cells were performed with TRACE-seq method. For CeU-seq and Target-seq, the RNA pellet was dissolved in 20 μl 5 mM EDTA, incubated at 80°C for 5 minutes, and quickly chilled on ice. Next, 10 μl denatured RNA was transferred into 100 μl in BEU buffer (50 mM Bicine, pH 8.5, 4 mM EDTA, 7 M urea) with 0.2 M CMC (Sigma, Cat#C106402, 95%) as the CMC+ sample, or into 100 μl BEU buffer as the CMC- control sample. Both CMC+ and CMC- samples were then incubated at 37 °C for 20 min, followed by purification with ethanol precipitation. The RNA pellets were then dissolved in 50 μl Na2CO3 buffer (50 mM Na2CO3 pH 10.4, 2 mM EDTA) and incubated at 37 °C for 6 h, followed by ethanol precipitation.

treatment_protocol: HEK293T cells were seeded in six-well plates and incubated for 24 h, followed by transfection. 72 h post transfection, total RNA was extracted from cells. For AAV-mediated cell transduction, 24 hours after seeding, HDF, HBE and B-Lymphocytes were transduced by AAV6.2 (EEF2-U1570/EEF2-U2881/PPIB-U272/CFTR-W1282X), and MEFs were transduced by AAVDJ (mIdua-W392X). 7 days after transduction, cells were collected.

value: primary mouse embryonic fibroblast

tag: passages


title: Target_MEF_Idua_mock


title: 3mix-timelapse, 3mix-timelapse-plate5_94

description:
3mix-timelapse-plate5_94
3mix_RNA_expression.txt


title: WT PA 3

city: Changsha

first: Zhongfan

last: Zheng

address: No. 27 Tianma Road

institute: Hunan university

description: fpkm.txt

data_processing:
Illumina Casava1.8 software used for basecalling.
The clean reads were mapped to the C. elegans genome sequence using Hisat2 v2.0.4. HTSeq v0.9.1 was used to count the reads numbers mapped to each gene.
FPKM of each gene was calculated based on the length of the gene and reads count mapped to this gene. Differential expression analysis of three biological replicates per condition was performed using the DESeq R package (1.18.0).
Genome_build: WBcel2
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for all Samples.

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans

growth_protocol: Synchronized L1 worms were placed onto NGM plates seeded with OP50 and grown at 20oC till L4 stage.

extract_protocol:
Animals were washed off the plates with M9 solution and frozen in TRIzol (Transgen, ER501-01-01). Total RNA was obtained using the kit (Transgen, ER501-01) and 1 ug total RNA from each sample was used as input material for the RNA sample preparations.
RNA libraries were prepared for sequencing using standard Illumina protocols.

treatment_protocol: L4 stage animals were collected and washed with M9 solution before being transferred to modified NGM plates containing OP50 or PA14 for 24 h at 25oC.

tag: genotype

tag: time

value: L4 animal exposured for 24 h

tag: development stage

value: L4 animal

tag: treatment

value: P. aeruginosa for 24 hrs


title: 3mix-timelapse, 3mix-timelapse-plate5_93

description:
3mix-timelapse-plate5_93
3mix_RNA_expression.txt

tag: strain

tag: cell type

tag: isolation method


title: HeLa_NFIB_ab_rep2


title: 3mix-timelapse, 3mix-timelapse-plate5_92

description:
3mix-timelapse-plate5_92
3mix_RNA_expression.txt


title: WT PA 1

description: fpkm.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_91

description:
3mix-timelapse-plate5_91
3mix_RNA_expression.txt


title: WT PA 2

description: fpkm.txt


title: WT OP 3

description: fpkm.txt

value: control


title: 3mix-timelapse, 3mix-timelapse-plate5_88

description:
3mix-timelapse-plate5_88
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_86

description:
3mix-timelapse-plate5_86
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_90

description:
3mix-timelapse-plate5_90
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_87

description:
3mix-timelapse-plate5_87
3mix_RNA_expression.txt


title: WT OP 2

description: fpkm.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_83

description:
3mix-timelapse-plate5_83
3mix_RNA_expression.txt


title: HeLa_Input_rep1


title: 3mix-timelapse, 3mix-timelapse-plate5_89

description:
3mix-timelapse-plate5_89
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_82

description:
3mix-timelapse-plate5_82
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_81

description:
3mix-timelapse-plate5_81
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_80

description:
3mix-timelapse-plate5_80
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_79

description:
3mix-timelapse-plate5_79
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_77

description:
3mix-timelapse-plate5_77
3mix_RNA_expression.txt


title: WT OP 1

description: fpkm.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_78

description:
3mix-timelapse-plate5_78
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_84

description:
3mix-timelapse-plate5_84
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_76

description:
3mix-timelapse-plate5_76
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_75

description:
3mix-timelapse-plate5_75
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_85

description:
3mix-timelapse-plate5_85
3mix_RNA_expression.txt


title: Hypothalamus tissue, control, rep4 [G4]

city: Baltimore

first: Josephine

middle: M.

last: Egan

state: MD

address: BRC Suite 100, 251 Bayview Boulevard

department: Laboratory of Clinical Investigation

institute: National Institute on Aging - NIH

description: HT_Normalized_counts_file_DESeq2.tabular

data_processing:
Raw data (raw reads) of fastq format were processed through in-house perl scripts to obtain clean data (clean reads) by removing reads containing adapter, poly-N and low-quality reads. At the same time, Q20, Q30 and GC content of the clean data were calculated. All the downstream analyses were based on this clean and high quality RNA-Seq data.
Post quality assurance, the data was mapped to the GRCm38 (mm10) mouse reference genome using HISAT2.
The resulting bam files were then used to count the number of reads that were mapped to annotated genes, using featureCounts.
Sequence read counts of annotated genes found in HT and CP data were then subjected differential gene expression analysis using DESeq2.
A p-value < 0.05 and a log2 fold change (Log2FC) > 0.2 was used to define differentially expressed genes (DEGs).
The normalized read counts (using Median of ratios method), p-values, adjusted p-values and Log2FCs for each DEG, generated by DESeq2, were used for all subsequent data visualizations including heatmaps, volcano plots, principal component analysis (PCA), gene set enrichment analysis (GSEA) & gene ontology (GO) term analysis, and pathway enrichment analysis.
Assembly: GRCm38 (mm10)
Supplementary files format and content: tab-delimited text files include normalized feature (gene) counts for each sample

source_name: Hypothalamus

extract_protocol:
RNA was extracted by affinity chromatography using PicoPure RNA isolation kit (Thermo Fisher Scientific)
Messenger RNA was purified from total RNA using poly-T oligo-attached magnetic beads. After fragmentation, the first strand cDNA was synthesized using random hexamer primers, followed by the second strand cDNA synthesis using dUTP for directional library construction. Directional library was ready after end repair, A-tailing, adapter ligation, size selection, USER enzyme digestion, amplification, and purification.

value: Hypothalamus

value: WT

tag: strain background

value: no treatment control


title: Hypothalamus tissue, control, rep6 [G5]


title: Hypothalamus tissue, control, rep3 [G3]


title: 3mix-timelapse, 3mix-timelapse-plate5_73

description:
3mix-timelapse-plate5_73
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_74

description:
3mix-timelapse-plate5_74
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_71

description:
3mix-timelapse-plate5_71
3mix_RNA_expression.txt


title: Hypothalamus tissue, control, rep2 [G2]


title: Hypothalamus tissue, Ins2 overexpressed in the choroid plexus, rep4 [F5]

value: Ins2 overexpression in the choroid plexus


title: Hypothalamus tissue, Ins2 overexpressed in the choroid plexus, rep5 [F6]


title: Hypothalamus tissue, control, rep1 [G1]


title: 3mix-timelapse, 3mix-timelapse-plate5_70

description:
3mix-timelapse-plate5_70
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_69

description:
3mix-timelapse-plate5_69
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_68

description:
3mix-timelapse-plate5_68
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_67

description:
3mix-timelapse-plate5_67
3mix_RNA_expression.txt


title: Hypothalamus tissue, Ins2 overexpressed in the choroid plexus, rep2 [F2]


title: Choroid plexus tissue, control, rep5 [B5]

description: CP_Normalized_counts_file_DESeq2.tabular

source_name: Choroid plexus

value: Choroid plexus


title: Hypothalamus tissue, Ins2 overexpressed in the choroid plexus, rep3 [F3]


title: 3mix-timelapse, 3mix-timelapse-plate5_72

description:
3mix-timelapse-plate5_72
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_66

description:
3mix-timelapse-plate5_66
3mix_RNA_expression.txt


title: Choroid plexus tissue, control, rep4 [B4]


title: 3mix-timelapse, 3mix-timelapse-plate5_65

description:
3mix-timelapse-plate5_65
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_61

description:
3mix-timelapse-plate5_61
3mix_RNA_expression.txt


title: Choroid plexus tissue, control, rep1 [B1]


title: 3mix-timelapse, 3mix-timelapse-plate5_64

description:
3mix-timelapse-plate5_64
3mix_RNA_expression.txt


title: Choroid plexus tissue, control, rep2 [B2]


title: 3mix-timelapse, 3mix-timelapse-plate5_62

description:
3mix-timelapse-plate5_62
3mix_RNA_expression.txt


title: Choroid plexus tissue, control, rep3 [B3]


title: 3mix-timelapse, 3mix-timelapse-plate5_57

description:
3mix-timelapse-plate5_57
3mix_RNA_expression.txt


title: Choroid plexus tissue, Ins2 overexpressed, rep3 [A3]


title: Choroid plexus tissue, Ins2 overexpressed, rep6 [A6]


title: Choroid plexus tissue, Ins2 overexpressed, rep5 [A5]


title: Choroid plexus tissue, Ins2 overexpressed, rep4 [A4]


title: 3mix-timelapse, 3mix-timelapse-plate5_56

description:
3mix-timelapse-plate5_56
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_60

description:
3mix-timelapse-plate5_60
3mix_RNA_expression.txt


title: H9

city: San Francisco

first: Akira

last: Kunitomi

state: CA

address: 1650 Owens Street

institute: The J. David Gladstone Institutes

description:
SAMPLE 12
Primed embryonic stem cells

hyb_protocol: The bisulfite conversion of 500 ng genomic DNA was performed using the EZ DNA Methylation Kit (Zymo Research), and the bisulfite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K or EPIC BeadChip Kit using standard Illumina protocol

scan_protocol: Using illumina iScan according to recommended scanner setting

data_processing: GenomeStudio V2011.1

label: Cy5 and Cy3

source_name: Human embryonic stem cells

label_protocol: Standard Illumina Protocol

growth_protocol: Primed PSCs were maintained in StemFit AK02N medium (Ajinomoto) on laminin 511-E8 fragments (iMatrix-511, Nippi)-coated plates. Naive PSCs were cultured on iMEFs and maintained in t2iLGö medium. Feeder-free naive iPSCs were maintained on Matrigel (hESC-qualified, Corning)

extract_protocol: Genomic DNA were extracted from cell lysates using the AllPrep DNA/RNA Mini Kit (QIAGEN)

value: Primed embryonic stem cells

tag: gender

value: Female

tag: growth protocol

value: on-feeder


title: Hypothalamus tissue, Ins2 overexpressed in the choroid plexus, rep1 [F1]

description: HT_Normalized_counts_file_DESeq2.tabular


title: OSKL_4

description:
SAMPLE 11
Primed induced pluripotent stem cells derived from adult periferal blood mononuclear cells

source_name: Human induced pluripotent stem cells

value: Primed induced pluripotent stem cells


title: 3mix-timelapse, 3mix-timelapse-plate5_55

description:
3mix-timelapse-plate5_55
3mix_RNA_expression.txt

value: random selection

value: ALPS


title: 201B7

description:
SAMPLE 13
Primed induced pluripotent stem cells derived from adult human dermal fibroblasts


title: OSKL_2

description:
SAMPLE 9
Primed induced pluripotent stem cells derived from adult human dermal fibroblasts


title: OSKL_1

description:
SAMPLE 8
Primed induced pluripotent stem cells derived from adult human dermal fibroblasts


title: nOSKL_1

description:
SAMPLE 1
Naive induced pluripotent stem cells derived from adult human dermal fibroblasts

value: Naive induced pluripotent stem cells


title: OSKL_3

description:
SAMPLE 10
Primed induced pluripotent stem cells derived from adult periferal blood mononuclear cells


title: nOSKL_2

description:
SAMPLE 2
Naive induced pluripotent stem cells derived from adult human dermal fibroblasts


title: 3mix-timelapse, 3mix-timelapse-plate5_54

description:
3mix-timelapse-plate5_54
3mix_RNA_expression.txt


title: Choroid plexus tissue, Ins2 overexpressed, rep1 [A1]

description: CP_Normalized_counts_file_DESeq2.tabular


title: Choroid plexus tissue, Ins2 overexpressed, rep2 [A2]


title: Mel_Lis_2

city: Memphis

first: Yong-Dong

last: Wang

state: TN

address: 262 Danny Thomas Pl, MS1135

institute: St. Jude Children's Research Hospital

description: melanoma with Lisinopril replicate 2

data_processing:
Illumina Casava1.8 software used for basecalling.
Sequenced reads were trimmed for adaptor sequence and low-quality sequence, then mapped to mm10 whole genome using CLC Genomic Workbench RNA seq tool. TPM for transcripts were reported.
Assembly: mm10
Supplementary files format and content: tab-delimited text files include TPM values for all 15 samples

source_name: tibialis anterior skeletal muscle from female C57BL/6J mice

extract_protocol:
Tissues were homogenized in Trizol and RNA extracted by isopropanol precipitation from the aqueous phase. RNA sequencing was performed as previously described from the  time points of 3 week post LLC cell injection
For sequencing, biological replicates were prepared with the TruSeq stranded mRNA library prep kit (Illumina) and sequenced on the Illumina NovaSeq 6000 platform.

value: tibialis anterior skeletal muscle

tag: age

value: 7 weeks

value: cachexia-induced melanoma with Lisinopril


title: 3mix-timelapse, 3mix-timelapse-plate5_52

description:
3mix-timelapse-plate5_52
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_51

description:
3mix-timelapse-plate5_51
3mix_RNA_expression.txt


title: Melan_3

description: cachexia-induced melanoma replicate 3

value: cachexia-induced melanoma


title: Mel_Lis_4

description: melanoma with Lisinopril replicate 4


title: 3mix-timelapse, 3mix-timelapse-plate5_63

description:
3mix-timelapse-plate5_63
3mix_RNA_expression.txt


title: nOSKL_3

description:
SAMPLE 3
Naive induced pluripotent stem cells derived from adult periferal blood mononuclear cells


title: Mel_Lis_3

description: melanoma with Lisinopril replicate 3


title: nOSKL_4

description:
SAMPLE 4
Naive induced pluripotent stem cells derived from  adult periferal blood mononuclear cells


title: Melan_1

description: cachexia-induced melanoma replicate 1


title: 3mix-timelapse, 3mix-timelapse-plate5_58

description:
3mix-timelapse-plate5_58
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_53

description:
3mix-timelapse-plate5_53
3mix_RNA_expression.txt


title: Melan_4

description: cachexia-induced melanoma replicate 4


title: 3mix-timelapse, 3mix-timelapse-plate5_50

description:
3mix-timelapse-plate5_50
3mix_RNA_expression.txt


title: nH9

description:
SAMPLE 7
Naive embryonic stem cells which were reset from the primed to naive state

value: Naive embryonic stem cells


title: 3mix-timelapse, 3mix-timelapse-plate5_49

description:
3mix-timelapse-plate5_49
3mix_RNA_expression.txt


title: Melan_2

description: cachexia-induced melanoma replicate 2


title: 3mix-timelapse, 3mix-timelapse-plate5_59

description:
3mix-timelapse-plate5_59
3mix_RNA_expression.txt


title: Lisin_3

description: control with Lisinopril replicate 3

value: mock-injected control with Lisinopril


title: 3mix-timelapse, 3mix-timelapse-plate5_48

description:
3mix-timelapse-plate5_48
3mix_RNA_expression.txt


title: Lisin_2

description: control with Lisinopril replicate 2


title: 3mix-timelapse, 3mix-timelapse-plate5_46

description:
3mix-timelapse-plate5_46
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_44

description:
3mix-timelapse-plate5_44
3mix_RNA_expression.txt


title: Control 4

description: mock-injected control replicate 4

value: mock-injected control


title: 3mix-timelapse, 3mix-timelapse-plate5_43

description:
3mix-timelapse-plate5_43
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_45

description:
3mix-timelapse-plate5_45
3mix_RNA_expression.txt


title: Control 1

description: mock-injected control replicate 1


title: 3mix-timelapse, 3mix-timelapse-plate5_42

description:
3mix-timelapse-plate5_42
3mix_RNA_expression.txt


title: Control 3

description: mock-injected control replicate 3


title: Lisin_1

description: control with Lisinopril replicate 1


title: 3mix-timelapse, 3mix-timelapse-plate5_40

description:
3mix-timelapse-plate5_40
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_41

description:
3mix-timelapse-plate5_41
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_38

description:
3mix-timelapse-plate5_38
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_36

description:
3mix-timelapse-plate5_36
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_37

description:
3mix-timelapse-plate5_37
3mix_RNA_expression.txt


title: WAT50NCAC8wk

description: non-cachectic melanoma cells 8 weeks replicate 5

data_processing:
Illumina Casava1.8 software used for basecalling.
Sequenced reads were trimmed for adaptor sequence and low-quality sequence, then mapped to mm10 whole genome using CLC Genomic Workbench RNA seq tool. TPM for transcripts were reported.
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text files include TPM values for all 62 samples

source_name: white adipose tissue from female C57BL/6J mice

value: white adipose tissue

value: 2 months

value: cachectic melanoma cells


title: WAT67Con8wk

description: mock injected 8 weeks replicate 2


title: WAT66Con8wk

description: mock injected 8 weeks replicate 1


title: WAT68Con8wk

description: mock injected 8 weeks replicate 3


title: WAT69Con8wk

description: mock injected 8 weeks replicate 4


title: 3mix-timelapse, 3mix-timelapse-plate5_35

description:
3mix-timelapse-plate5_35
3mix_RNA_expression.txt


title: WAT70Con8wk

description: mock injected 8 weeks replicate 5


title: WAT49NCAC8wk

description: non-cachectic melanoma cells 8 weeks replicate 4


title: WAT48NCAC8wk

description: non-cachectic melanoma cells 8 weeks replicate 3


title: 3mix-timelapse, 3mix-timelapse-plate5_34

description:
3mix-timelapse-plate5_34
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_47

description:
3mix-timelapse-plate5_47
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_33

description:
3mix-timelapse-plate5_33
3mix_RNA_expression.txt


title: WAT47NCAC8wk

description: non-cachectic melanoma cells 8 weeks replicate 2


title: Control 2

description: mock-injected control replicate 2


title: 3mix-timelapse, 3mix-timelapse-plate5_32

description:
3mix-timelapse-plate5_32
3mix_RNA_expression.txt


title: Mel_Lis_1

description: melanoma with Lisinopril replicate 1


title: 3mix-timelapse, 3mix-timelapse-plate5_31

description:
3mix-timelapse-plate5_31
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_39

description:
3mix-timelapse-plate5_39
3mix_RNA_expression.txt


title: WAT46NCAC8wk

description: non-cachectic melanoma cells 8 weeks replicate 1


title: 3mix-timelapse, 3mix-timelapse-plate5_29

description:
3mix-timelapse-plate5_29
3mix_RNA_expression.txt


title: WAT30CAC8wk

description: cachectic melanoma cells 8 weeks replicate 7


title: 3mix-timelapse, 3mix-timelapse-plate5_30

description:
3mix-timelapse-plate5_30
3mix_RNA_expression.txt


title: WAT28CAC8wk

description: cachectic melanoma cells 8 weeks replicate 6


title: 3mix-timelapse, 3mix-timelapse-plate5_28

description:
3mix-timelapse-plate5_28
3mix_RNA_expression.txt


title: WAT24CAC8wk

description: cachectic melanoma cells 8 weeks replicate 4


title: 3mix-timelapse, 3mix-timelapse-plate5_26

description:
3mix-timelapse-plate5_26
3mix_RNA_expression.txt


title: WAT27CAC8wk

description: cachectic melanoma cells 8 weeks replicate 5


title: 3mix-timelapse, 3mix-timelapse-plate5_27

description:
3mix-timelapse-plate5_27
3mix_RNA_expression.txt


title: WAT23CAC8wk

description: cachectic melanoma cells 8 weeks replicate 3


title: WAT21CAC8wk

description: cachectic melanoma cells 8 weeks replicate 2


title: 3mix-timelapse, 3mix-timelapse-plate5_25

description:
3mix-timelapse-plate5_25
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_22

description:
3mix-timelapse-plate5_22
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_24

description:
3mix-timelapse-plate5_24
3mix_RNA_expression.txt


title: WAT65Con6wk

description: mock injected 6 weeks replicate 5


title: WAT63Con6wk

description: mock injected 6 weeks replicate 3


title: WAT64Con6wk

description: mock injected 6 weeks replicate 4


title: WAT62Con6wk

description: mock injected 6 weeks replicate 2


title: WAT19CAC8wk

description: cachectic melanoma cells 8 weeks replicate 1


title: 3mix-timelapse, 3mix-timelapse-plate5_20

description:
3mix-timelapse-plate5_20
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_21

description:
3mix-timelapse-plate5_21
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_23

description:
3mix-timelapse-plate5_23
3mix_RNA_expression.txt


title: WAT61Con6wk

description: mock injected 6 weeks replicate 1


title: 3mix-timelapse, 3mix-timelapse-plate5_19

description:
3mix-timelapse-plate5_19
3mix_RNA_expression.txt


title: WAT45NCAC6wk

description: non-cachectic melanoma cells 6 weeks replicate 5


title: 3mix-timelapse, 3mix-timelapse-plate5_18

description:
3mix-timelapse-plate5_18
3mix_RNA_expression.txt


title: WAT43NCAC6wk

description: non-cachectic melanoma cells 6 weeks replicate 3


title: 3mix-timelapse, 3mix-timelapse-plate5_14

description:
3mix-timelapse-plate5_14
3mix_RNA_expression.txt


title: WAT41NCAC6wk

description: non-cachectic melanoma cells 6 weeks replicate 1


title: WAT15CAC6wk

description: cachectic melanoma cells 6 weeks replicate 5


title: 3mix-timelapse, 3mix-timelapse-plate5_15

description:
3mix-timelapse-plate5_15
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_13

description:
3mix-timelapse-plate5_13
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_11

description:
3mix-timelapse-plate5_11
3mix_RNA_expression.txt


title: WAT14CAC6wk

description: cachectic melanoma cells 6 weeks replicate 4


title: WAT13CAC6wk

description: cachectic melanoma cells 6 weeks replicate 3


title: 3mix-timelapse, 3mix-timelapse-plate5_10

description:
3mix-timelapse-plate5_10
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_7

description:
3mix-timelapse-plate5_7
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_17

description:
3mix-timelapse-plate5_17
3mix_RNA_expression.txt


title: WAT11CAC6wk

description: cachectic melanoma cells 6 weeks replicate 1


title: 3mix-timelapse, 3mix-timelapse-plate5_6

description:
3mix-timelapse-plate5_6
3mix_RNA_expression.txt


title: WAT60Con4wk

description: mock injected 4 weeks replicate 5


title: WAT12CAC6wk

description: cachectic melanoma cells 6 weeks replicate 2


title: WAT58Con4wk

description: mock injected 4 weeks replicate 3


title: WAT56Con4wk

description: mock injected 4 weeks replicate 1


title: 3mix-timelapse, 3mix-timelapse-plate5_8

description:
3mix-timelapse-plate5_8
3mix_RNA_expression.txt


title: WAT42NCAC6wk

description: non-cachectic melanoma cells 6 weeks replicate 2


title: 3mix-timelapse, 3mix-timelapse-plate5_5

description:
3mix-timelapse-plate5_5
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_9

description:
3mix-timelapse-plate5_9
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_4

description:
3mix-timelapse-plate5_4
3mix_RNA_expression.txt


title: WAT40NCAC4wk

description: non-cachectic melanoma cells 4 weeks replicate 5


title: WAT59Con4wk

description: mock injected 4 weeks replicate 4


title: WAT44NCAC6wk

description: non-cachectic melanoma cells 6 weeks replicate 4


title: 3mix-timelapse, 3mix-timelapse-plate5_12

description:
3mix-timelapse-plate5_12
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_16

description:
3mix-timelapse-plate5_16
3mix_RNA_expression.txt


title: WAT57Con4wk

description: mock injected 4 weeks replicate 2


title: 3mix-timelapse, 3mix-timelapse-plate5_3

description:
3mix-timelapse-plate5_3
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate5_1

description:
3mix-timelapse-plate5_1
3mix_RNA_expression.txt


title: WAT38NCAC4wk

description: non-cachectic melanoma cells 4 weeks replicate 3


title: WAT37NCAC4wk

description: non-cachectic melanoma cells 4 weeks replicate 2


title: WAT39NCAC4wk

description: non-cachectic melanoma cells 4 weeks replicate 4


title: 3mix-timelapse, 3mix-timelapse-plate5_2

description:
3mix-timelapse-plate5_2
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate4_95

description:
3mix-timelapse-plate4_95
3mix_RNA_expression.txt


title: WAT36NCAC4wk

description: non-cachectic melanoma cells 4 weeks replicate 1


title: 3mix-timelapse, 3mix-timelapse-plate4_96

description:
3mix-timelapse-plate4_96
3mix_RNA_expression.txt


title: WAT10CAC4wk

description: cachectic melanoma cells 4 weeks replicate 5


title: WAT9CAC4wk

description: cachectic melanoma cells 4 weeks replicate 4


title: 3mix-timelapse, 3mix-timelapse-plate4_91

description:
3mix-timelapse-plate4_91
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate4_92

description:
3mix-timelapse-plate4_92
3mix_RNA_expression.txt


title: WAT7CAC4wk

description: cachectic melanoma cells 4 weeks replicate 2


title: WAT8CAC4wk

description: cachectic melanoma cells 4 weeks replicate 3


title: WAT6CAC4wk

description: cachectic melanoma cells 4 weeks replicate 1


title: 3mix-timelapse, 3mix-timelapse-plate4_90

description:
3mix-timelapse-plate4_90
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate4_88

description:
3mix-timelapse-plate4_88
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate4_87

description:
3mix-timelapse-plate4_87
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate4_86

description:
3mix-timelapse-plate4_86
3mix_RNA_expression.txt


title: WAT51Con2wk

description: mock injected 2 weeks replicate 1


title: WAT52Con2wk

description: mock injected 2 weeks replicate 2


title: WAT55Con2wk

description: mock injected 2 weeks replicate 5


title: 3mix-timelapse, 3mix-timelapse-plate4_89

description:
3mix-timelapse-plate4_89
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate4_85

description:
3mix-timelapse-plate4_85
3mix_RNA_expression.txt


title: WAT54Con2wk

description: mock injected 2 weeks replicate 4


title: 3mix-timelapse, 3mix-timelapse-plate4_93

description:
3mix-timelapse-plate4_93
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate4_83

description:
3mix-timelapse-plate4_83
3mix_RNA_expression.txt


title: WAT34NCAC2wk

description: non-cachectic melanoma cells 2 weeks replicate 4


title: WAT33NCAC2wk

description: non-cachectic melanoma cells 2 weeks replicate 3


title: 3mix-timelapse, 3mix-timelapse-plate4_82

description:
3mix-timelapse-plate4_82
3mix_RNA_expression.txt


title: WAT32NCAC2wk

description: non-cachectic melanoma cells 2 weeks replicate 2


title: 3mix-timelapse, 3mix-timelapse-plate4_94

description:
3mix-timelapse-plate4_94
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate4_81

description:
3mix-timelapse-plate4_81
3mix_RNA_expression.txt


title: WAT31NCAC2wk

description: non-cachectic melanoma cells 2 weeks replicate 1


title: 3mix-timelapse, 3mix-timelapse-plate4_79

description:
3mix-timelapse-plate4_79
3mix_RNA_expression.txt


title: WAT4CAC2wk

description: cachectic melanoma cells 2 weeks replicate 4


title: 3mix-timelapse, 3mix-timelapse-plate4_78

description:
3mix-timelapse-plate4_78
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate4_76

description:
3mix-timelapse-plate4_76
3mix_RNA_expression.txt


title: WAT53Con2wk

description: mock injected 2 weeks replicate 3


title: WAT3CAC2wk

description: cachectic melanoma cells 2 weeks replicate 3


title: WAT2CAC2wk

description: cachectic melanoma cells 2 weeks replicate 2


title: WAT35NCAC2wk

description: non-cachectic melanoma cells 2 weeks replicate 5


title: 3mix-timelapse, 3mix-timelapse-plate4_74

description:
3mix-timelapse-plate4_74
3mix_RNA_expression.txt


title: WAT1CAC2wk

description: cachectic melanoma cells 2 weeks replicate 1


title: 3mix-timelapse, 3mix-timelapse-plate4_84

description:
3mix-timelapse-plate4_84
3mix_RNA_expression.txt


title: SOL69Con8wk

description: mock injected 8 weeks replicate 4

source_name: soleus skeletal muscle from female C57BL/6J mice

tag: Sex

value: female

value: soleus skeletal muscle

value: mock injected

tag: timepoint

value: 8 weeks


title: SOL68Con8wk

description: mock injected 8 weeks replicate 3

tag: tissue


title: SOL67Con8wk

description: mock injected 8 weeks replicate 2


title: SOL70Con8wk

description: mock injected 8 weeks replicate 5


title: 3mix-timelapse, 3mix-timelapse-plate4_75

description:
3mix-timelapse-plate4_75
3mix_RNA_expression.txt

value: random selection


title: 3mix-target, 3mix-target-plate3_63

description:
3mix-target-plate3_63
3mix_RNA_expression.txt

value: T cell

value: ALPS


title: 3mix-target, 3mix-target-plate3_60

description:
3mix-target-plate3_60
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_62

description:
3mix-target-plate3_62
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_59

description:
3mix-target-plate3_59
3mix_RNA_expression.txt


title: SOL49NCAC8wk

description: non-cachectic melanoma cells 8 weeks replicate 4

value: non-cachectic melanoma cells


title: SOL50NCAC8wk

description: non-cachectic melanoma cells 8 weeks replicate 5


title: 3mix-target, 3mix-target-plate3_61

description:
3mix-target-plate3_61
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate4_80

description:
3mix-timelapse-plate4_80
3mix_RNA_expression.txt


title: WAT5CAC2wk

description: cachectic melanoma cells 2 weeks replicate 5


title: SOL66Con8wk

description: mock injected 8 weeks replicate 1


title: 3mix-target, 3mix-target-plate3_58

description:
3mix-target-plate3_58
3mix_RNA_expression.txt


title: SOL48NCAC8wk

description: non-cachectic melanoma cells 8 weeks replicate 3


title: 3mix-target, 3mix-target-plate3_57

description:
3mix-target-plate3_57
3mix_RNA_expression.txt


title: 3mix-timelapse, 3mix-timelapse-plate4_77

description:
3mix-timelapse-plate4_77
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_56

description:
3mix-target-plate3_56
3mix_RNA_expression.txt


title: SOL46NCAC8wk

description: non-cachectic melanoma cells 8 weeks replicate 1


title: SOL30CAC8wk

description: cachectic melanoma cells 8 weeks replicate 7


title: 3mix-target, 3mix-target-plate3_54

description:
3mix-target-plate3_54
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_53

description:
3mix-target-plate3_53
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_55

description:
3mix-target-plate3_55
3mix_RNA_expression.txt


title: SOL28CAC8wk

description: cachectic melanoma cells 8 weeks replicate 6


title: 3mix-target, 3mix-target-plate3_52

description:
3mix-target-plate3_52
3mix_RNA_expression.txt


title: SOL24CAC8wk

description: cachectic melanoma cells 8 weeks replicate 4


title: SOL23CAC8wk

description: cachectic melanoma cells 8 weeks replicate 3


title: SOL21CAC8wk

description: cachectic melanoma cells 8 weeks replicate 2


title: SOL19CAC8wk

description: cachectic melanoma cells 8 weeks replicate 1


title: 3mix-target, 3mix-target-plate3_50

description:
3mix-target-plate3_50
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_49

description:
3mix-target-plate3_49
3mix_RNA_expression.txt


title: SOL63Con6wk

description: mock injected 6 weeks replicate 3

value: 6 weeks


title: 3mix-target, 3mix-target-plate3_47

description:
3mix-target-plate3_47
3mix_RNA_expression.txt


title: SOL65Con6wk

description: mock injected 6 weeks replicate 5


title: SOL64Con6wk

description: mock injected 6 weeks replicate 4


title: SOL47NCAC8wk

description: non-cachectic melanoma cells 8 weeks replicate 2


title: 3mix-target, 3mix-target-plate3_46

description:
3mix-target-plate3_46
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_45

description:
3mix-target-plate3_45
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_48

description:
3mix-target-plate3_48
3mix_RNA_expression.txt


title: SOL45NCAC6wk

description: non-cachectic melanoma cells 6 weeks replicate 5


title: SOL44NCAC6wk

description: non-cachectic melanoma cells 6 weeks replicate 4


title: SOL61Con6wk

description: mock injected 6 weeks replicate 1


title: SOL62Con6wk

description: mock injected 6 weeks replicate 2


title: 3mix-target, 3mix-target-plate3_44

description:
3mix-target-plate3_44
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_43

description:
3mix-target-plate3_43
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_42

description:
3mix-target-plate3_42
3mix_RNA_expression.txt


title: SOL27CAC8wk

description: cachectic melanoma cells 8 weeks replicate 5


title: 3mix-target, 3mix-target-plate3_51

description:
3mix-target-plate3_51
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_39

description:
3mix-target-plate3_39
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_41

description:
3mix-target-plate3_41
3mix_RNA_expression.txt


title: SOL43NCAC6wk

description: non-cachectic melanoma cells 6 weeks replicate 3


title: 3mix-target, 3mix-target-plate3_38

description:
3mix-target-plate3_38
3mix_RNA_expression.txt


title: SOL15CAC6wk

description: cachectic melanoma cells 6 weeks replicate 5


title: SOL42NCAC6wk

description: non-cachectic melanoma cells 6 weeks replicate 2


title: SOL41NCAC6wk

description: non-cachectic melanoma cells 6 weeks replicate 1


title: SOL14CAC6wk

description: cachectic melanoma cells 6 weeks replicate 4


title: 3mix-target, 3mix-target-plate3_37

description:
3mix-target-plate3_37
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_35

description:
3mix-target-plate3_35
3mix_RNA_expression.txt

value: leukemia cell


title: 3mix-target, 3mix-target-plate3_36

description:
3mix-target-plate3_36
3mix_RNA_expression.txt


title: SOL13CAC6wk

description: cachectic melanoma cells 6 weeks replicate 3


title: 3mix-target, 3mix-target-plate3_34

description:
3mix-target-plate3_34
3mix_RNA_expression.txt


title: SOL60Con4wk

description: mock injected 4 weeks replicate 5

value: 4 weeks


title: SOL59Con4wk

description: mock injected 4 weeks replicate 4


title: SOL12CAC6wk

description: cachectic melanoma cells 6 weeks replicate 2


title: 3mix-target, 3mix-target-plate3_40

description:
3mix-target-plate3_40
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_32

description:
3mix-target-plate3_32
3mix_RNA_expression.txt


title: SOL11CAC6wk

description: cachectic melanoma cells 6 weeks replicate 1


title: 3mix-target, 3mix-target-plate3_30

description:
3mix-target-plate3_30
3mix_RNA_expression.txt


title: SOL57Con4wk

description: mock injected 4 weeks replicate 2


title: SOL40NCAC4wk

description: non-cachectic melanoma cells 4 weeks replicate 5


title: SOL39NCAC4wk

description: non-cachectic melanoma cells 4 weeks replicate 4


title: SOL58Con4wk

description: mock injected 4 weeks replicate 3


title: 3mix-target, 3mix-target-plate3_28

description:
3mix-target-plate3_28
3mix_RNA_expression.txt


title: SOL36NCAC4wk

description: non-cachectic melanoma cells 4 weeks replicate 1


title: SOL38NCAC4wk

description: non-cachectic melanoma cells 4 weeks replicate 3


title: SOL56Con4wk

description: mock injected 4 weeks replicate 1


title: 3mix-target, 3mix-target-plate3_31

description:
3mix-target-plate3_31
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_27

description:
3mix-target-plate3_27
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_26

description:
3mix-target-plate3_26
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_24

description:
3mix-target-plate3_24
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_25

description:
3mix-target-plate3_25
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_29

description:
3mix-target-plate3_29
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_23

description:
3mix-target-plate3_23
3mix_RNA_expression.txt


title: SOL8CAC4wk

description: cachectic melanoma cells 4 weeks replicate 3


title: SOL10CAC4wk

description: cachectic melanoma cells 4 weeks replicate 5


title: 3mix-target, 3mix-target-plate3_20

description:
3mix-target-plate3_20
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_33

description:
3mix-target-plate3_33
3mix_RNA_expression.txt


title: SOL9CAC4wk

description: cachectic melanoma cells 4 weeks replicate 4


title: SOL7CAC4wk

description: cachectic melanoma cells 4 weeks replicate 2


title: SOL6CAC4wk

description: cachectic melanoma cells 4 weeks replicate 1


title: 3mix-target, 3mix-target-plate3_19

description:
3mix-target-plate3_19
3mix_RNA_expression.txt


title: SOL37NCAC4wk

description: non-cachectic melanoma cells 4 weeks replicate 2


title: 3mix-target, 3mix-target-plate3_18

description:
3mix-target-plate3_18
3mix_RNA_expression.txt


title: SOL55Con2wk

description: mock injected 2 weeks replicate 5

value: 2 weeks


title: SOL54Con2wk

description: mock injected 2 weeks replicate 4


title: SOL52Con2wk

description: mock injected 2 weeks replicate 2


title: 3mix-target, 3mix-target-plate3_17

description:
3mix-target-plate3_17
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_15

description:
3mix-target-plate3_15
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_16

description:
3mix-target-plate3_16
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_13

description:
3mix-target-plate3_13
3mix_RNA_expression.txt


title: SOL51Con2wk

description: mock injected 2 weeks replicate 1


title: SOL35NCAC2wk

description: non-cachectic melanoma cells 2 weeks replicate 5


title: 3mix-target, 3mix-target-plate3_14

description:
3mix-target-plate3_14
3mix_RNA_expression.txt


title: SOL53Con2wk

description: mock injected 2 weeks replicate 3


title: 3mix-target, 3mix-target-plate3_22

description:
3mix-target-plate3_22
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_11

description:
3mix-target-plate3_11
3mix_RNA_expression.txt


title: SOL34NCAC2wk

description: non-cachectic melanoma cells 2 weeks replicate 4


title: 3mix-target, 3mix-target-plate3_9

description:
3mix-target-plate3_9
3mix_RNA_expression.txt


title: SOL33NCAC2wk

description: non-cachectic melanoma cells 2 weeks replicate 3


title: 3mix-target, 3mix-target-plate3_10

description:
3mix-target-plate3_10
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_21

description:
3mix-target-plate3_21
3mix_RNA_expression.txt


title: SOL31NCAC2wk

description: non-cachectic melanoma cells 2 weeks replicate 1


title: 3mix-target, 3mix-target-plate3_8

description:
3mix-target-plate3_8
3mix_RNA_expression.txt


title: SOL32NCAC2wk

description: non-cachectic melanoma cells 2 weeks replicate 2


title: SOL5CAC2wk

description: cachectic melanoma cells 2 weeks replicate 5


title: 3mix-target, 3mix-target-plate3_6

description:
3mix-target-plate3_6
3mix_RNA_expression.txt


title: SOL3CAC2wk

description: cachectic melanoma cells 2 weeks replicate 3


title: 3mix-target, 3mix-target-plate3_7

description:
3mix-target-plate3_7
3mix_RNA_expression.txt


title: SOL4CAC2wk

description: cachectic melanoma cells 2 weeks replicate 4


title: 3mix-target, 3mix-target-plate3_5

description:
3mix-target-plate3_5
3mix_RNA_expression.txt


title: SOL2CAC2wk

description: cachectic melanoma cells 2 weeks replicate 2


title: 3mix-target, 3mix-target-plate3_4

description:
3mix-target-plate3_4
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_2

description:
3mix-target-plate3_2
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_1

description:
3mix-target-plate3_1
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_12

description:
3mix-target-plate3_12
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_95

description:
3mix-target-plate2_95
3mix_RNA_expression.txt

value: hematopoietic progenitor cell


title: 3mix-target, 3mix-target-plate2_94

description:
3mix-target-plate2_94
3mix_RNA_expression.txt


title: NEO69Con8wk

description:
mock injected 8 weeks replicate 4
2140013_NEO69Con8wk_S158_L004

source_name: neocortex from female C57BL/6J mice

value: neocortex

tag: treatment/time point

value: mock injected 8 weeks


title: NEO68Con8wk

description:
mock injected 8 weeks replicate 3
2140012_NEO68Con8wk_S157_L004

value: 2 months


title: NEO50NCAC8wk

description:
non-cachectic melanoma cells 8 weeks replicate 5
2140009_NEO50NCAC8wk_S154_L004

value: non-cachectic melanoma cells 8 weeks


title: 3mix-target, 3mix-target-plate2_96

description:
3mix-target-plate2_96
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_93

description:
3mix-target-plate2_93
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_92

description:
3mix-target-plate2_92
3mix_RNA_expression.txt


title: NEO49NCAC8wk

description:
non-cachectic melanoma cells 8 weeks replicate 4
2140008_NEO49NCAC8wk_S153_L004

value: female


title: NEO48NCAC8wk

description:
non-cachectic melanoma cells 8 weeks replicate 3
2140007_NEO48NCAC8wk_S152_L004


title: NEO46NCAC8wk

description:
non-cachectic melanoma cells 8 weeks replicate 1
2140005_NEO46NCAC8wk_S150_L004


title: NEO66Con8wk

description:
mock injected 8 weeks replicate 1
2140010_NEO66Con8wk_S155_L004


title: NEO47NCAC8wk

description:
non-cachectic melanoma cells 8 weeks replicate 2
2140006_NEO47NCAC8wk_S151_L004


title: NEO30CAC8wk

description:
cachectic melanoma cells 8 weeks replicate 7
2140004_NEO30CAC8wk_S149_L004

value: cachectic melanoma cells 8 weeks


title: NEO28CAC8wk

description:
cachectic melanoma cells 8 weeks replicate 6
2140003_NEO28CAC8wk_S148_L004


title: 3mix-target, 3mix-target-plate2_89

description:
3mix-target-plate2_89
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_90

description:
3mix-target-plate2_90
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_91

description:
3mix-target-plate2_91
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_87

description:
3mix-target-plate2_87
3mix_RNA_expression.txt


title: NEO27CAC8wk

description:
cachectic melanoma cells 8 weeks replicate 5
2140002_NEO27CAC8wk_S147_L004


title: 3mix-target, 3mix-target-plate2_86

description:
3mix-target-plate2_86
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate3_3

description:
3mix-target-plate3_3
3mix_RNA_expression.txt


title: SOL1CAC2wk

description: cachectic melanoma cells 2 weeks replicate 1

value: soleus skeletal muscle

value: cachectic melanoma cells


title: NEO70Con8wk

description:
mock injected 8 weeks replicate 5
2140014_NEO70Con8wk_S159_L004


title: NEO67Con8wk

description:
mock injected 8 weeks replicate 2
2140011_NEO67Con8wk_S156_L004


title: NEO24CAC8wk

description:
cachectic melanoma cells 8 weeks replicate 4
2140001_NEO24CAC8wk_S146_L004


title: 3mix-target, 3mix-target-plate2_85

description:
3mix-target-plate2_85
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_84

description:
3mix-target-plate2_84
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_83

description:
3mix-target-plate2_83
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_82

description:
3mix-target-plate2_82
3mix_RNA_expression.txt


title: NEO19CAC8wk

description:
cachectic melanoma cells 8 weeks replicate 1
2139998_NEO19CAC8wk_S143_L004


title: NEO23CAC8wk

description:
cachectic melanoma cells 8 weeks replicate 3
2140000_NEO23CAC8wk_S145_L004


title: 3mix-target, 3mix-target-plate2_80

description:
3mix-target-plate2_80
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_81

description:
3mix-target-plate2_81
3mix_RNA_expression.txt


title: NEO64Con6wk

description:
mock injected 6 weeks replicate 4
2139996_NEO64Con6wk_S141_L004

value: mock injected 6 weeks


title: 3mix-target, 3mix-target-plate2_78

description:
3mix-target-plate2_78
3mix_RNA_expression.txt


title: NEO62Con6wk

description:
mock injected 6 weeks replicate 2
2139994_NEO62Con6wk_S139_L004


title: 3mix-target, 3mix-target-plate2_88

description:
3mix-target-plate2_88
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_79

description:
3mix-target-plate2_79
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_77

description:
3mix-target-plate2_77
3mix_RNA_expression.txt


title: NEO45NCAC6wk

description:
non-cachectic melanoma cells 6 weeks replicate 5
2139992_NEO45NCAC6wk_S137_L004

value: non-cachectic melanoma cells 6 weeks


title: 3mix-target, 3mix-target-plate2_76

description:
3mix-target-plate2_76
3mix_RNA_expression.txt

value: ALPS


title: NEO43NCAC6wk

description:
non-cachectic melanoma cells 6 weeks replicate 3
2139990_NEO43NCAC6wk_S135_L004


title: NEO44NCAC6wk

description:
non-cachectic melanoma cells 6 weeks replicate 4
2139991_NEO44NCAC6wk_S136_L004


title: 3mix-target, 3mix-target-plate2_74

description:
3mix-target-plate2_74
3mix_RNA_expression.txt


title: NEO42NCAC6wk

description:
non-cachectic melanoma cells 6 weeks replicate 2
2139989_NEO42NCAC6wk_S134_L004


title: 3mix-target, 3mix-target-plate2_75

description:
3mix-target-plate2_75
3mix_RNA_expression.txt


title: NEO41NCAC6wk

description:
non-cachectic melanoma cells 6 weeks replicate 1
2139988_NEO41NCAC6wk_S133_L004


title: NEO15CAC6wk

description:
cachectic melanoma cells 6 weeks replicate 5
2139987_NEO15CAC6wk_S132_L004

value: cachectic melanoma cells 6 weeks


title: NEO21CAC8wk

description:
cachectic melanoma cells 8 weeks replicate 2
2139999_NEO21CAC8wk_S144_L004


title: 3mix-target, 3mix-target-plate2_73

description:
3mix-target-plate2_73
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_71

description:
3mix-target-plate2_71
3mix_RNA_expression.txt

value: T cell


title: 3mix-target, 3mix-target-plate2_72

description:
3mix-target-plate2_72
3mix_RNA_expression.txt


title: NEO14CAC6wk

description:
cachectic melanoma cells 6 weeks replicate 4
2139986_NEO14CAC6wk_S131_L004


title: 3mix-target, 3mix-target-plate2_70

description:
3mix-target-plate2_70
3mix_RNA_expression.txt


title: NEO13CAC6wk

description:
cachectic melanoma cells 6 weeks replicate 3
2139985_NEO13CAC6wk_S130_L004


title: 3mix-target, 3mix-target-plate2_68

description:
3mix-target-plate2_68
3mix_RNA_expression.txt


title: NEO63Con6wk

description:
mock injected 6 weeks replicate 3
2139995_NEO63Con6wk_S140_L004


title: NEO65Con6wk

description:
mock injected 6 weeks replicate 5
2139997_NEO65Con6wk_S142_L004


title: NEO61Con6wk

description:
mock injected 6 weeks replicate 1
2139993_NEO61Con6wk_S138_L004


title: 3mix-target, 3mix-target-plate2_67

description:
3mix-target-plate2_67
3mix_RNA_expression.txt


title: NEO12CAC6wk

description:
cachectic melanoma cells 6 weeks replicate 2
2139984_NEO12CAC6wk_S129_L004


title: 3mix-target, 3mix-target-plate2_65

description:
3mix-target-plate2_65
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_66

description:
3mix-target-plate2_66
3mix_RNA_expression.txt


title: NEO59Con4wk

description:
mock injected 4 weeks replicate 4
2139981_NEO59Con4wk_S126_L004

value: mock injected 4 weeks


title: NEO58Con4wk

description:
mock injected 4 weeks replicate 3
2139980_NEO58Con4wk_S125_L004


title: NEO11CAC6wk

description:
cachectic melanoma cells 6 weeks replicate 1
2139983_NEO11CAC6wk_S128_L004


title: NEO57Con4wk

description:
mock injected 4 weeks replicate 2
2139979_NEO57Con4wk_S124_L004


title: NEO60Con4wk

description:
mock injected 4 weeks replicate 5
2139982_NEO60Con4wk_S127_L004


title: 3mix-target, 3mix-target-plate2_62

description:
3mix-target-plate2_62
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_64

description:
3mix-target-plate2_64
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_61

description:
3mix-target-plate2_61
3mix_RNA_expression.txt


title: NEO40NCAC4wk

description:
non-cachectic melanoma cells 4 weeks replicate 5
2139977_NEO40NCAC4wk_S122_L004

value: non-cachectic melanoma cells 4 weeks


title: NEO39NCAC4wk

description:
non-cachectic melanoma cells 4 weeks replicate 4
2139976_NEO39NCAC4wk_S120_L003


title: NEO38NCAC4wk

description:
non-cachectic melanoma cells 4 weeks replicate 3
2139975_NEO38NCAC4wk_S119_L003


title: 3mix-target, 3mix-target-plate2_60

description:
3mix-target-plate2_60
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_59

description:
3mix-target-plate2_59
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_69

description:
3mix-target-plate2_69
3mix_RNA_expression.txt


title: NEO37NCAC4wk

description:
non-cachectic melanoma cells 4 weeks replicate 2
2139974_NEO37NCAC4wk_S118_L003


title: 3mix-target, 3mix-target-plate2_58

description:
3mix-target-plate2_58
3mix_RNA_expression.txt


title: NEO36NCAC4wk

description:
non-cachectic melanoma cells 4 weeks replicate 1
2139973_NEO36NCAC4wk_S117_L003


title: 3mix-target, 3mix-target-plate2_57

description:
3mix-target-plate2_57
3mix_RNA_expression.txt


title: NEO10CAC4wk

description:
cachectic melanoma cells 4 weeks replicate 5
2139972_NEO10CAC4wk_S116_L003

value: cachectic melanoma cells 4 weeks


title: NEO9CAC4wk

description:
cachectic melanoma cells 4 weeks replicate 4
2139971_NEO9CAC4wk_S115_L003


title: 3mix-target, 3mix-target-plate2_56

description:
3mix-target-plate2_56
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_55

description:
3mix-target-plate2_55
3mix_RNA_expression.txt


title: NEO8CAC4wk

description:
cachectic melanoma cells 4 weeks replicate 3
2139970_NEO8CAC4wk_S114_L003


title: NEO7CAC4wk

description:
cachectic melanoma cells 4 weeks replicate 2
2139969_NEO7CAC4wk_S113_L003


title: 3mix-target, 3mix-target-plate2_54

description:
3mix-target-plate2_54
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_52

description:
3mix-target-plate2_52
3mix_RNA_expression.txt


title: NEO6CAC4wk

description:
cachectic melanoma cells 4 weeks replicate 1
2139968_NEO6CAC4wk_S112_L003


title: NEO55Con2wk

description:
mock injected 2 weeks replicate 5
2139967_NEO55Con2wk_S111_L003

value: mock injected 2 weeks


title: 3mix-target, 3mix-target-plate2_53

description:
3mix-target-plate2_53
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_63

description:
3mix-target-plate2_63
3mix_RNA_expression.txt


title: NEO53Con2wk

description:
mock injected 2 weeks replicate 3
2139965_NEO53Con2wk_S109_L003

value: neocortex


title: 3mix-target, 3mix-target-plate2_51

description:
3mix-target-plate2_51
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_50

description:
3mix-target-plate2_50
3mix_RNA_expression.txt


title: NEO54Con2wk

description:
mock injected 2 weeks replicate 4
2139966_NEO54Con2wk_S110_L003


title: NEO56Con4wk

description:
mock injected 4 weeks replicate 1
2139978_NEO56Con4wk_S123_L004


title: 3mix-target, 3mix-target-plate2_49

description:
3mix-target-plate2_49
3mix_RNA_expression.txt


title: NEO52Con2wk

description:
mock injected 2 weeks replicate 2
2139964_NEO52Con2wk_S108_L003


title: NEO51Con2wk

description:
mock injected 2 weeks replicate 1
2139963_NEO51Con2wk_S107_L003


title: 3mix-target, 3mix-target-plate2_47

description:
3mix-target-plate2_47
3mix_RNA_expression.txt


title: NEO35NCAC2wk

description:
non-cachectic melanoma cells 2 weeks replicate 5
2139962_NEO35NCAC2wk_S106_L003

value: non-cachectic melanoma cells 2 weeks


title: 3mix-target, 3mix-target-plate2_46

description:
3mix-target-plate2_46
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_48

description:
3mix-target-plate2_48
3mix_RNA_expression.txt


title: NEO34NCAC2wk

description:
non-cachectic melanoma cells 2 weeks replicate 4
2139961_NEO34NCAC2wk_S105_L003

value: 2 months


title: 3mix-target, 3mix-target-plate2_45

description:
3mix-target-plate2_45
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_44

description:
3mix-target-plate2_44
3mix_RNA_expression.txt


title: NEO32NCAC2wk

description:
non-cachectic melanoma cells 2 weeks replicate 2
2139959_NEO32NCAC2wk_S103_L003


title: NEO33NCAC2wk

description:
non-cachectic melanoma cells 2 weeks replicate 3
2139960_NEO33NCAC2wk_S104_L003


title: NEO31NCAC2wk

description:
non-cachectic melanoma cells 2 weeks replicate 1
2139958_NEO31NCAC2wk_S102_L003


title: 3mix-target, 3mix-target-plate2_43

description:
3mix-target-plate2_43
3mix_RNA_expression.txt


title: NEO5CAC2wk

description:
cachectic melanoma cells 2 weeks replicate 5
2139957_NEO5CAC2wk_S101_L003

value: cachectic melanoma cells 2 weeks


title: 3mix-target, 3mix-target-plate2_42

description:
3mix-target-plate2_42
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_41

description:
3mix-target-plate2_41
3mix_RNA_expression.txt


title: NEO4CAC2wk

description:
cachectic melanoma cells 2 weeks replicate 4
2139956_NEO4CAC2wk_S100_L003

value: female


title: 3mix-target, 3mix-target-plate2_40

description:
3mix-target-plate2_40
3mix_RNA_expression.txt


title: NEO3CAC2wk

description:
cachectic melanoma cells 2 weeks replicate 3
2139955_NEO3CAC2wk_S99_L003


title: 3mix-target, 3mix-target-plate2_39

description:
3mix-target-plate2_39
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_38

description:
3mix-target-plate2_38
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_37

description:
3mix-target-plate2_37
3mix_RNA_expression.txt


title: NEO1CAC2wk

description:
cachectic melanoma cells 2 weeks replicate 1
2139953_NEO1CAC2wk_S97_L003


title: NEO2CAC2wk

description:
cachectic melanoma cells 2 weeks replicate 2
2139954_NEO2CAC2wk_S98_L003


title: HIP70Con8wk

description:
mock injected 8 weeks replicate 5
2139948_HIP70Con8wk_S61

data_processing:
Illumina Casava1.8 software used for basecalling.
Sequenced reads were trimmed for adaptor sequence and low-quality sequence, then mapped to mm10 whole genome using CLC Genomic Workbench RNA seq tool. TPM for transcripts were reported.
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text files include TPM values for all 60 samples

source_name: hippocampus from female C57BL/6J mice

value: hippocampus

value: mock injected 8 weeks


title: 3mix-target, 3mix-target-plate2_36

description:
3mix-target-plate2_36
3mix_RNA_expression.txt

value: leukemia cell


title: HIP68Con8wk

description:
mock injected 8 weeks replicate 3
2139946_HIP68Con8wk_S59


title: HIP69Con8wk

description:
mock injected 8 weeks replicate 4
2139947_HIP69Con8wk_S60


title: 3mix-target, 3mix-target-plate2_35

description:
3mix-target-plate2_35
3mix_RNA_expression.txt


title: HIP67Con8wk

description:
mock injected 8 weeks replicate 2
2139945_HIP67Con8wk_S58


title: HIP66Con8wk

description:
mock injected 8 weeks replicate 1
2139944_HIP66Con8wk_S57


title: HIP50NCAC8wk

description:
non-cachectic melanoma cells 8 weeks replicate 5
2139943_HIP50NCAC8wk_S56

value: non-cachectic melanoma cells 8 weeks


title: 3mix-target, 3mix-target-plate2_32

description:
3mix-target-plate2_32
3mix_RNA_expression.txt


title: HIP49NCAC8wk

description:
non-cachectic melanoma cells 8 weeks replicate 4
2139942_HIP49NCAC8wk_S55


title: 3mix-target, 3mix-target-plate2_33

description:
3mix-target-plate2_33
3mix_RNA_expression.txt


title: HIP48NCAC8wk

description:
non-cachectic melanoma cells 8 weeks replicate 3
2139941_HIP48NCAC8wk_S54


title: 3mix-target, 3mix-target-plate2_29

description:
3mix-target-plate2_29
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_30

description:
3mix-target-plate2_30
3mix_RNA_expression.txt


title: HIP47NCAC8wk

description:
non-cachectic melanoma cells 8 weeks replicate 2
2139940_HIP47NCAC8wk_S53


title: 3mix-target, 3mix-target-plate2_31

description:
3mix-target-plate2_31
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_28

description:
3mix-target-plate2_28
3mix_RNA_expression.txt


title: HIP30CAC8wk

description:
cachectic melanoma cells 8 weeks replicate 7
2139938_HIP30CAC8wk_S51

value: cachectic melanoma cells 8 weeks


title: 3mix-target, 3mix-target-plate2_27

description:
3mix-target-plate2_27
3mix_RNA_expression.txt

value: ALPS


title: 3mix-target, 3mix-target-plate2_26

description:
3mix-target-plate2_26
3mix_RNA_expression.txt


title: HIP28CAC8wk

description:
cachectic melanoma cells 8 weeks replicate 6
2139937_HIP28CAC8wk_S50


title: 3mix-target, 3mix-target-plate2_25

description:
3mix-target-plate2_25
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_24

description:
3mix-target-plate2_24
3mix_RNA_expression.txt


title: HIP27CAC8wk

description:
cachectic melanoma cells 8 weeks replicate 5
2139936_HIP27CAC8wk_S49


title: 3mix-target, 3mix-target-plate2_23

description:
3mix-target-plate2_23
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_34

description:
3mix-target-plate2_34
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_21

description:
3mix-target-plate2_21
3mix_RNA_expression.txt


title: HIP21CAC8wk

description:
cachectic melanoma cells 8 weeks replicate 2
2139933_HIP21CAC8wk_S46


title: HIP24CAC8wk

description:
cachectic melanoma cells 8 weeks replicate 4
2139935_HIP24CAC8wk_S48


title: HIP23CAC8wk

description:
cachectic melanoma cells 8 weeks replicate 3
2139934_HIP23CAC8wk_S47


title: 3mix-target, 3mix-target-plate2_20

description:
3mix-target-plate2_20
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_22

description:
3mix-target-plate2_22
3mix_RNA_expression.txt


title: HIP19CAC8wk

description:
cachectic melanoma cells 8 weeks replicate 1
2139932_HIP19CAC8wk_S45


title: HIP65Con6wk

description:
mock injected 6 weeks replicate 5
2139931_HIP65Con6wk_S44

value: mock injected 6 weeks


title: 3mix-target, 3mix-target-plate2_19

description:
3mix-target-plate2_19
3mix_RNA_expression.txt


title: HIP64Con6wk

description:
mock injected 6 weeks replicate 4
2139930_HIP64Con6wk_S43


title: 3mix-target, 3mix-target-plate2_18

description:
3mix-target-plate2_18
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_17

description:
3mix-target-plate2_17
3mix_RNA_expression.txt


title: HIP63Con6wk

description:
mock injected 6 weeks replicate 3
2139929_HIP63Con6wk_S42


title: HIP62Con6wk

description:
mock injected 6 weeks replicate 2
2139928_HIP62Con6wk_S41


title: HIP46NCAC8wk

description:
non-cachectic melanoma cells 8 weeks replicate 1
2139939_HIP46NCAC8wk_S52


title: 3mix-target, 3mix-target-plate2_15

description:
3mix-target-plate2_15
3mix_RNA_expression.txt


title: HIP44NCAC6wk

description:
non-cachectic melanoma cells 6 weeks replicate 4
2139925_HIP44NCAC6wk_S39

value: non-cachectic melanoma cells 6 weeks


title: 3mix-target, 3mix-target-plate2_14

description:
3mix-target-plate2_14
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_16

description:
3mix-target-plate2_16
3mix_RNA_expression.txt


title: HIP61Con6wk

description:
mock injected 6 weeks replicate 1
2139927_HIP61Con6wk_S40


title: HIP43NCAC6wk

description:
non-cachectic melanoma cells 6 weeks replicate 3
2139924_HIP43NCAC6wk_S38


title: HIP42NCAC6wk

description:
non-cachectic melanoma cells 6 weeks replicate 2
2139923_HIP42NCAC6wk_S37


title: HIP41NCAC6wk

description:
non-cachectic melanoma cells 6 weeks replicate 1
2139922_HIP41NCAC6wk_S36


title: 3mix-target, 3mix-target-plate2_12

description:
3mix-target-plate2_12
3mix_RNA_expression.txt


title: HIP15CAC6wk

description:
cachectic melanoma cells 6 weeks replicate 5
2139921_HIP15CAC6wk_S35

value: cachectic melanoma cells 6 weeks


title: 3mix-target, 3mix-target-plate2_10

description:
3mix-target-plate2_10
3mix_RNA_expression.txt


title: HIP14CAC6wk

description:
cachectic melanoma cells 6 weeks replicate 4
2139920_HIP14CAC6wk_S34


title: 3mix-target, 3mix-target-plate2_9

description:
3mix-target-plate2_9
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_8

description:
3mix-target-plate2_8
3mix_RNA_expression.txt


title: HIP12CAC6wk

description:
cachectic melanoma cells 6 weeks replicate 2
2139918_HIP12CAC6wk_S32


title: HIP11CAC6wk

description:
cachectic melanoma cells 6 weeks replicate 1
2139917_HIP11CAC6wk_S31


title: 3mix-target, 3mix-target-plate2_6

description:
3mix-target-plate2_6
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_7

description:
3mix-target-plate2_7
3mix_RNA_expression.txt


title: HIP59Con4wk

description:
mock injected 4 weeks replicate 4
2139915_HIP59Con4wk_S29

value: mock injected 4 weeks


title: HIP60Con4wk

description:
mock injected 4 weeks replicate 5
2139916_HIP60Con4wk_S30


title: 3mix-target, 3mix-target-plate2_4

description:
3mix-target-plate2_4
3mix_RNA_expression.txt


title: HIP58Con4wk

description:
mock injected 4 weeks replicate 3
2139914_HIP58Con4wk_S28


title: HIP57Con4wk

description:
mock injected 4 weeks replicate 2
2139913_HIP57Con4wk_S27


title: HIP56Con4wk

description:
mock injected 4 weeks replicate 1
2139912_HIP56Con4wk_S26


title: HIP40NCAC4wk

description:
non-cachectic melanoma cells 4 weeks replicate 5
2139911_HIP40NCAC4wk_S25

value: non-cachectic melanoma cells 4 weeks


title: 3mix-target, 3mix-target-plate2_3

description:
3mix-target-plate2_3
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_13

description:
3mix-target-plate2_13
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_1

description:
3mix-target-plate2_1
3mix_RNA_expression.txt


title: HIP39NCAC4wk

description:
non-cachectic melanoma cells 4 weeks replicate 4
2139910_HIP39NCAC4wk_S24


title: HIP38NCAC4wk

description:
non-cachectic melanoma cells 4 weeks replicate 3
2139909_HIP38NCAC4wk_S23


title: 3mix-target, 3mix-target-plate2_11

description:
3mix-target-plate2_11
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate1_95

description:
3mix-target-plate1_95
3mix_RNA_expression.txt

value: hematopoietic progenitor cell


title: 3mix-target, 3mix-target-plate1_96

description:
3mix-target-plate1_96
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate1_94

description:
3mix-target-plate1_94
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate1_93

description:
3mix-target-plate1_93
3mix_RNA_expression.txt


title: HIP13CAC6wk

description:
cachectic melanoma cells 6 weeks replicate 3
2139919_HIP13CAC6wk_S33


title: HIP37NCAC4wk

description:
non-cachectic melanoma cells 4 weeks replicate 2
2139908_HIP37NCAC4wk_S22


title: 3mix-target, 3mix-target-plate1_92

description:
3mix-target-plate1_92
3mix_RNA_expression.txt


title: HIP10CAC4wk

description:
cachectic melanoma cells 4 weeks replicate 5
2139906_HIP10CAC4wk_S20

value: cachectic melanoma cells 4 weeks


title: 3mix-target, 3mix-target-plate1_91

description:
3mix-target-plate1_91
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate2_5

description:
3mix-target-plate2_5
3mix_RNA_expression.txt


title: HIP9CAC4wk

description:
cachectic melanoma cells 4 weeks replicate 4
2139905_HIP9CAC4wk_S19


title: HIP8CAC4wk

description:
cachectic melanoma cells 4 weeks replicate 3
2139904_HIP8CAC4wk_S18


title: HIP7CAC4wk

description:
cachectic melanoma cells 4 weeks replicate 2
2139903_HIP7CAC4wk_S17


title: 3mix-target, 3mix-target-plate2_2

description:
3mix-target-plate2_2
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate1_89

description:
3mix-target-plate1_89
3mix_RNA_expression.txt


title: HIP6CAC4wk

description:
cachectic melanoma cells 4 weeks replicate 1
2139902_HIP6CAC4wk_S16


title: 3mix-target, 3mix-target-plate1_87

description:
3mix-target-plate1_87
3mix_RNA_expression.txt


title: HIP55Con2wk

description:
mock injected 2 weeks replicate 5
2139901_HIP55Con2wk_S15

value: mock injected 2 weeks


title: 3mix-target, 3mix-target-plate1_86

description:
3mix-target-plate1_86
3mix_RNA_expression.txt


title: HIP52Con2wk

description:
mock injected 2 weeks replicate 2
2139898_HIP52Con2wk_S12

value: 2 months


title: 3mix-target, 3mix-target-plate1_85

description:
3mix-target-plate1_85
3mix_RNA_expression.txt


title: HIP54Con2wk

description:
mock injected 2 weeks replicate 4
2139900_HIP54Con2wk_S14


title: HIP53Con2wk

description:
mock injected 2 weeks replicate 3
2139899_HIP53Con2wk_S13


title: 3mix-target, 3mix-target-plate1_84

description:
3mix-target-plate1_84
3mix_RNA_expression.txt


title: HIP34NCAC2wk

description:
non-cachectic melanoma cells 2 weeks replicate 4
2139895_HIP34NCAC2wk_S9

value: non-cachectic melanoma cells 2 weeks


title: HIP36NCAC4wk

description:
non-cachectic melanoma cells 4 weeks replicate 1
2139907_HIP36NCAC4wk_S21

value: female


title: HIP51Con2wk

description:
mock injected 2 weeks replicate 1
2139897_HIP51Con2wk_S11

value: hippocampus


title: HIP35NCAC2wk

description:
non-cachectic melanoma cells 2 weeks replicate 5
2139896_HIP35NCAC2wk_S10


title: 3mix-target, 3mix-target-plate1_83

description:
3mix-target-plate1_83
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate1_80

description:
3mix-target-plate1_80
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate1_82

description:
3mix-target-plate1_82
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate1_81

description:
3mix-target-plate1_81
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate1_79

description:
3mix-target-plate1_79
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate1_90

description:
3mix-target-plate1_90
3mix_RNA_expression.txt


title: HIP32NCAC2wk

description:
non-cachectic melanoma cells 2 weeks replicate 2
2139893_HIP32NCAC2wk_S7


title: HIP33NCAC2wk

description:
non-cachectic melanoma cells 2 weeks replicate 3
2139894_HIP33NCAC2wk_S8


title: HIP31NCAC2wk

description:
non-cachectic melanoma cells 2 weeks replicate 1
2139892_HIP31NCAC2wk_S6


title: 3mix-target, 3mix-target-plate1_77

description:
3mix-target-plate1_77
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate1_88

description:
3mix-target-plate1_88
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate1_76

description:
3mix-target-plate1_76
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate1_78

description:
3mix-target-plate1_78
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate1_75

description:
3mix-target-plate1_75
3mix_RNA_expression.txt


title: HIP2CAC2wk

description:
cachectic melanoma cells 2 weeks replicate 2
2139888_HIP2CAC2wk_S2

value: cachectic melanoma cells 2 weeks


title: 3mix-target, 3mix-target-plate1_74

description:
3mix-target-plate1_74
3mix_RNA_expression.txt


title: HIP1CAC2wk

description:
cachectic melanoma cells 2 weeks replicate 1
2139887_HIP1CAC2wk_S1


title: 3mix-target, 3mix-target-plate1_73

description:
3mix-target-plate1_73
3mix_RNA_expression.txt


title: 3mix-target, 3mix-target-plate1_72

description:
3mix-target-plate1_72
3mix_RNA_expression.txt

value: T cell


title: 3mix-target, 3mix-target-plate1_71

description:
3mix-target-plate1_71
3mix_RNA_expression.txt


title: CER70Con8wk

description: mock injected 8 weeks replicate 5

source_name: cerebellum from female C57BL/6J mice

value: cerebellum

value: cachectic melanoma cells

value: 8 weeks


title: CER69Con8wk

description: mock injected 8 weeks replicate 4


title: CER68Con8wk

description: mock injected 8 weeks replicate 3


title: 3mix-target, 3mix-target-plate1_70

description:
3mix-target-plate1_70
3mix_RNA_expression.txt

value: ALPS