title: 8.18.21 8 0.5mm 60s

description: UMI Matrix


title: 3.29.22 1 2.75mm 64s

status: Public on Jan 01 2023

type: SRA

city: Stanford

first: D.

middle: Blaine

last: Marchant

state: California

address: Gilbert Biological Sciences Building, 371 Serra Mall

department: Biology

country: USA

institute: Stanford University

description: UMI Matrix

library_source: transcriptomic single cell

data_processing:
Multiplexed libraries were sequenced with paired-end sequencing. The first read of each read pair contained exclusively barcoding information: a 6 nt sample barcode and a 10 bp unique molecular identifier (UMI). Paired-end reads were demultiplexed based on the sample barcodes, requiring a perfect match to one of the barcode sequences. The UMIs were extracted and appended to the read 2 sequence identifiers. The submitted fastq files are demultiplexed files for read2, with the UMI from read 1 appended to the sequence identifiers.
Prior to alignment, reads were trimmed and filtered using Fastp with parameters -y -x -3 -f 6. Reads were then aligned to the AGPv4 genome assembly using HiSat2.
The number of UMIs for each gene and each sample were counted, allowing for a 1 bp mismatch in UMIs to avoid over-counting artifacts resulting from sequencing errors
Assembly: AgpV4
Supplementary files format and content: CSV containing the UMI counts for each cell (column) and gene (row)

molecule: polyA RNA

organism: Zea mays

source_name: anther

growth_protocol: individuals were grown under greenhouse conditions in Stanford, CA, USA with 14-h day/10-h night lighting, approximating half of peak summer solar radiation including UV-A. Daily irrigation and fertilization maintained robust growth

extract_protocol:
Anthers dissected, fixed, digested, isolated using a Hana Cell Sorter (NamoCell) following FX-Cell protocol (Marchant et al. 2022)
CEL-Seq2 (Hashimshony et al., 2016) with modifications per Nelms and Walbot 2019.

tag: tissue

value: anther

tag: cell type

value: anther single cell

tag: genotype


title: 8.18.21 1 2.5mm 37s

description: UMI Matrix


title: D3_LMNA_Rep2

city: Oslo

first: Philippe

last: Collas

address: PO Box 1112 Blindern

department: Institute of Basic Medical Sciences

country: Norway

institute: University of Oslo

description: ASCs on day 3 after adipogenic induction

library_source: genomic

data_processing:
ChIP-seq reads were aligned to the hg38 reference genome using bowtie2 version 2.4.1
For histone ChIPs with replicates, bams files were merged.  For LMNA ChIPs, replicates were merged after peak calling.
Duplicate reads were removed using picard MarkDuplicates.  For histone ChIPs multi-mapping reads and alignments with a mapping quality below 10 were also filtered out.
For histone modification ChIPseq, peaks were called using macs2 2.2.7.1.  For H3K27me3, H3K36me3 and H3K4me1 option --broad was used.
For LMNA ChIPseq, peak calling was done using Enriched Domain Detector (EDD) version 1.1.15, run 10 times on each sample to optimize BinSize and GapPenalty settings before a final run with optimized settings.
Assembly: hg38
Supplementary files format and content: Bed EDD peak file - 4th column is EDD score.
Supplementary files format and content: bigwig (.bw) files are regular bigwig files are log2ratio of filtered ChIP/Input files, generated using bamCompare from deeptools 3.5.1 if the extension is ".grep.norm.bw".  Else if the tracks ends "_pileup.norm.bw" the track is generated from macs output files as the log 10 ratio of treat/control lamba pileup files.
Supplementary files format and content: .narrowPeak and .broadPeak files are modified bed files created by macs2 callpeaks

molecule: genomic DNA

organism: Homo sapiens

source_name: Adipose

growth_protocol: Human normal ASCs purifed from adipose tissue were cultured in proliferating state in DMEM/F12 containing 10 % fetal calf serum and 20 ng/ml basic fibroblast growth factor.

extract_protocol:
For ChIP, cells were sonicated to produce chromatin fragments of 200 base-pairs, lysates were clarified by sedimentation and histone-DNA or lamin-DNA complexes were isolated from supernatants by ChIP using specific antibodies. RNA was purified from cell lysates using the RNEasy mini kit (Qiagen).
ChIP sequencing libraries were prepared according to Illumina protocols for sequencing at the Norwegian Sequencing Center.

treatment_protocol: Proliferating cells were harvested, re-seeded at confluency and cultured confluent for 48 h without fibroblast growth factor. On Day 0, ASCs were induced to differentiate with 10 µg/ml insulin, 200 µM indomethacin, 1 µM dexamethasone and 0.5 µM 3-isobutyl-1-methylxanthine.  Cells were collected at indicated timepoints for protein, RNA and chromatin preparations and analyses.

value: Human primary adipose stem cells

value: Adipose

tag: time

value: Day 3

tag: chip antibody

value: LMNA/C (Santa Cruz sc-7292)

tag: replicate


title: 8.18.21 8 0.5mm 91s

description: UMI Matrix


title: 8.18.21 8 0.5mm 85s

description: UMI Matrix


title: Fb_LD1_00_rep1

city: Düsseldorf

first: Andreas

middle: PM

last: Weber

address: Universitätsstr. 1

department: Institute for Plant Biochemistry

country: Germany

institute: Heinrich-Heine-University

library_source: transcriptomic

data_processing:
Illumina Casava-1.9software used for basecalling.
Illumina reads were aligned to a minimal set of coding sequences of the TAIR 10 release of the Arabidopsis thaliana genome (http://www.arabidopsis.org/) using BLAT (Kent, 2002) in protein space. The minimal transcriptome was obtained as described in Gowik et al. (2011) and contains 22,079 protein coding genes.
The best BLAT hit for each read was determined by (i) lowest e-value and (ii) highest bit score.
Raw read counts were transformed to reads per million (rpm) to normalize for the number of reads available at each sampling stage
Means of rpm of biological duplicate group (drought stage) were calculated.
Supplementary_files_format_and_content: Excel sheet (SDataset1.xlsx) file including Arabidopsis Gene Identifier (AGI) and TAIR10_short_description, raw counts, rpm for each sample and mean rpm for biological duplicates

molecule: total RNA

organism: Flaveria bidentis

source_name: Leaf

growth_protocol: Flaveria bidentis (C4) and Flaveria robusta (C3) plants were grown in the green house for 36 days and in a controlled growth chamber (10 hr light, 22 ˚C / 14 hr dark, 20 ˚C) for 6 days

extract_protocol:
Mature leaves were harvested and immediately frozen in liquid nitrogen. RNA was isolated from ground tissue using the Qiagen RNeasy plant mini kit. Residues of DNA were removed with DNase (New England Biolabs). RNA integrity, sequencing library and fragment size were analyzed on a 2100 Bioanalyzer (Agilent). Libraries were prepared using the TruSeq RNA Sample Prep Kit v2 (Illumina), and quantified with a Qubit 2.0 (Invitrogen).
Libraries were prepared using the TruSeq RNA Sample Prep Kit v2 (Illumina). Samples were multiplexed with 12 libraries per lane and sequenced in single-end mode (Rapid Run, 100 bp read length) on an Illumina HiSeq 2000 platform.

treatment_protocol: After two days under entrained (10 hr light, 14 hr dark) conditions, plants were subjected to two days of free-running (constant light) conditions

tag: time of the day

tag: zeitgeber time

tag: light regime

value: Light

tag: day/night anticipation

value: Day (entrained)


title: D3_LMNA_Rep1


title: D1_LMNA_Rep2

description: ASCs on day 1 after adipogenic induction

value: Day 1


title: 8.18.21 8 0.5mm 9s

description: UMI Matrix


title: 8.18.21 8 0.5mm 76s

description: UMI Matrix


title: 8.18.21 2 1.5mm 43s

description: UMI Matrix


title: D0_LMNA_Rep2

description: ASCs on the day of adipogenic induction

value: Day 0


title: 3.29.22 1 1.25mm 25s

description: UMI Matrix


title: 1.4.21 3 0.5mm 29s

description: UMI Matrix


title: Fb_LD1_08_rep2


title: D1_LMNA_Rep1


title: 8.18.21 2 1.25mm 79s

description: UMI Matrix


title: 3.29.22 1 2.75mm 16s

description: UMI Matrix


title: D0_LMNA_Rep1

description: ASCs on the day of adipogenic induction


title: 8.18.21 2 1.0mm 62s

description: UMI Matrix


title: HO_17_M_right

city: Oxford

first: Linyi

last: Zhu

address: Roosevelt drive

country: United Kingdom

institute: Kennedy institute of Rheumatology, University of Oxford

data_processing:
Sequence reads were aligned to the human genome with Hisat2 (version 2.1.0) using a “genome_trans” index built from the GRCh38 release of the human genome and Ensembl version 91 annotations (two-pass strategy to discover novel splice sites; with parameters: --dta and --score-min L,0.0,-0.2)
Mapped reads were counted using featureCounts (Subread version 1.6.3; Ensembl version 91 annotations; with default parameters)
Salmon v0.9.1 was used to calculate TPM values using a quasi-index (built with Ensembl version 91 annotations and k=31) and gc bias correction (parameter “--gcBias”).
Assembly: GRCh38
Supplementary files format and content: csv file includes raw featureCounts counts for all samples
Supplementary files format and content: csv file with TPMs from Salmon for all samples

source_name: trapezium articular cartilage

extract_protocol:
The trapezium cartilage was dissected from the bone within 1 hour of surgical removal from the joint and was snap-frozen in liquid nitrogen and stored at -80 °C。 Cartilage tissue was ground to a powder using Cryo-Cup Grinder (Biospec). Total RNA was extracted using the Qiagen RNeasy Micro Kit according to the manufacturer’s instructions, and its concentration was determined with the NanopDrop 1000 spectrophotometer and RNA quality assessed with the Agilent Bioanalyzer.
PolyA-selected sequencing libraries were prepared using the TruSeq protocol (Illumina). Libraries were subject to 75 bp paired-end sequencing (Illumina HiSeq 4000).

value: trapezium articular cartilage

value: HO

tag: patient id

tag: gender

value: M

tag: hand

value: right

tag: age

tag: tissue from_hand

value: dominant

tag: bmi


title: 8.18.21 7 0.5mm 32s

description: UMI Matrix


title: HO_20_F_left

value: F

value: left


title: 7.21 5 0.75mm 79s

description: UMI Matrix

value: anther


title: HO_19_F_left


title: 3.29.22 1 3.0mm 48s

description: UMI Matrix

value: anther single cell


title: 8.18.21 5 1.0mm 49s

description: UMI Matrix


title: 7.21 1 2.0mm 62s

description: UMI Matrix


title: HO_15_F_right


title: 8.18.21 1 1.75mm 84s

description: UMI Matrix


title: 8.18.21 8 0.5mm 77s

description: UMI Matrix


title: HO_12_F_left


title: HO_14_F_right


title: HO_16_F_right


title: 8.18.21 2 1.25mm 39s

description: UMI Matrix


title: HO_10_F_left


title: HO_9_F_left


title: 1.4.21 2 1.5mm 39s

description: UMI Matrix


title: HO_11_F_left


title: 8.18.21 2 1.25mm 74s

description: UMI Matrix


title: 7.21 1 2.0mm 46s

description: UMI Matrix


title: 8.18.21 2 1.5mm 77s

description: UMI Matrix


title: 8.18.21 5 1.0mm 85s

description: UMI Matrix


title: WT_8_F_left

value: WT


title: WT_6_F_right


title: 1.4.21 1 0.5mm 2s

description: UMI Matrix


title: WT_5_F_right


title: WT_4_F_left


title: WT_3_M_right


title: HO_18_F_right


title: 1.4.21 1 0.5mm 57s

description: UMI Matrix


title: WT_2_M_right


title: HO_13_F_right


title: WT_1_M_left


title: 8.18.21 1 2.5mm 66s

description: UMI Matrix


title: 3.29.22 1 1.25mm 55s

description: UMI Matrix


title: 8.18.21 8 0.5mm 78s

description: UMI Matrix


title: 1.4.21 2 1.75mm 66s

description: UMI Matrix


title: 3.29.22 1 1.25mm 81s

description: UMI Matrix


title: 8.18.21 7 0.5mm 61s

description: UMI Matrix


title: shl20190501-710

city: Los Angeles

first: David

last: Cobrinik

state: CA

address: 4546 Sunset Blvd

institute: Children's Hospital Los Angeles

data_processing:
Sequence reads were trimmed for adaptor sequence/low-quality sequence using trimmomatic
Trimmed sequence reads were mapped to grch38 using HISAT2
Transcript assembly and quantitation were performed using StringTie
Read count extraction was performed using tximport
Assembly: GRCh38

source_name: fetal retina

extract_protocol:
Retinae were dissected from fetal eyes in ice-cold PBS, dissociated in 2 ml 10 u/ml papain at 37o C for 10 min, followed by gentle pipetting with a 1,000 ul tip to dissociate larger pieces every 5-10 min (at 37o C for an additional 20-30 min total) to obtain a mostly single-cell suspension. ~ 2 volumes of retina culture media [IMDM, 10% fetal bovine serum (FBS), 0.28 u/ml insulin, 55 uM β-mercaptoethanol, 1% by volume penicillin-streptomycin] was used to halt dissociation. Cells were centrifuged at 300 x g for 10 min, resuspended for counting, then recentrifuged and resuspended at 10,000 cell/ul in PBS with 5% FBS and CD133-PE, CD44-FITC, and CD49b FITC antibodies. After 1 h at room temperature, samples were diluted in PBS + 5% FBS, centrifuged, and resuspended in PBS with 1% FBS and 10 ug/ml DAPI. Forward and side scatter and CD133+/CD44,CD49b-low gating was used to enrich for cone photoreceptors. Single cells were either i) directly collected from FACS into 1.2 ul lysis buffer droplets on a parafilm-covered glass slide and transferred to low-adherence tubes for subsequent processing or ii) collected in bulk for isolation with the Fluidigm C1 microfluidics system.
Full-length single cell cDNA transcripts were generated using SMARTer (Sequencing #1- 2) or SMART-SeqV4 chemistry (Sequencing #3 - 6) from Clontech (now Takara Bio) at ~ 0.1x scale using a Mantis liquid handler. Library preparation was performed using the Nextera XT DNA Library Preparation Kit at reduced volume using Mantis liquid handler and otherwise as per the manufacturer instructions.

value: fetal retina

tag: sequencing run

tag: post fertilization_week

tag: collection method

value: FACS

tag: pfw-retina id

tag: final dataset

value: N

tag: removal reason


title: shl20190501-709

tag: tissue


title: shl20190501-708


title: 1.4.21 4 2.5mm 79s

description: UMI Matrix

tag: cell type

tag: genotype


title: blank

city: Tianjin

first: Chenghao

last: Xuan

address: 22 Qixiangtai Road

country: China

institute: Tianjin Medical University

library_source: other

data_processing:
MAGeCK was used to perform read-count mapping, normalizaiton, and QC.
MAGeCK was used to identify positively and negatively selected genes in the screens.
Supplementary files format and content: sgRNA count_normalized; All sgRNA counts in different group were calculated by MAGeCK.
Library strategy: CRISPR screen

molecule: other

source_name: human hepatocellular carcinoma cell

growth_protocol: HepG2 cells were cultured in Dulbecco's modified Eagle’s medium supplemented with 10% fetal bovine serum at 37 ℃ in a humidified atmosphere with 5% CO2.

extract_protocol:
The genomic DNA of each group was extracted, and sgRNA fragments were amplified by PCR.
DNA libraries were prepared for sequencing using standard Illumina protocols.

treatment_protocol: The HepG2 cell pools generated by the CRISPR/Cas9 lentivirus library infection were cultured under different conditions: untreated (blank), DMSO treatment, and Sorafenib (5 μM) treatment for 15 days.

tag: cell line

value: liver

tag: treatment

value: blank


title: shl20190501-707


title: 8.18.21 5 1.0mm 17s

description: UMI Matrix


title: 1.4.21 3 0.5mm 35s

description: UMI Matrix


title: 8.18.21 2 1.5mm 72s

description: UMI Matrix


title: dmso-1


title: 1.4.21 1 1.0mm 31s

description: UMI Matrix


title: shl20190501-706


title: 8.18.21 6 2.75mm 1s

description: UMI Matrix


title: sora-1


title: sora-2


title: 8.18.21 8 0.5mm 53s

description: UMI Matrix


title: shl20190501-705


title: shl20190501-704


title: shl20190501-703


title: 8.18.21 2 1.25mm 27s

description: UMI Matrix


title: 1.4.21 3 0.5mm 94s

description: UMI Matrix


title: dmso-2


title: 8.18.21 1 2.5mm 65s

description: UMI Matrix


title: 8.18.21 1 2.5mm 36s

description: UMI Matrix


title: shl20190501-702


title: shl20190501-701


title: 1.4.21 3 0.5mm 10s

description: UMI Matrix


title: shl20190501-700


title: 7.21 5 0.75mm 54s

description: UMI Matrix


title: shl20190501-699


title: 8.18.21 1 2.5mm 53s

description: UMI Matrix


title: shl20190501-698


title: 8.18.21 7 0.5mm 19s

description: UMI Matrix


title: shl20190501-696


title: shl20190501-695


title: 8.18.21 7 0.5mm 16s

description: UMI Matrix


title: 8.18.21 6 2.75mm 5s

description: UMI Matrix


title: 8.18.21 2 1.75mm 58s

description: UMI Matrix


title: 1.4.21 2 2.5mm 81s

description: UMI Matrix


title: shl20190501-694


title: 8.18.21 2 1.0mm 94s

description: UMI Matrix


title: shl20190501-693


title: shl20190501-697


title: shl20190501-691


title: 7.21 2 2.0mm 56s

description: UMI Matrix


title: shl20190501-690


title: shl20190501-692


title: 8.18.21 1 2.5mm 23s

description: UMI Matrix


title: shl20190501-689


title: 8.18.21 3 2.75mm 23s

description: UMI Matrix


title: 8.18.21 5 1.0mm 94s

description: UMI Matrix


title: shl20190501-688


title: 8.18.21 8 0.5mm 26s

description: UMI Matrix


title: shl20190501-687


title: shl20190501-686


title: shl20190501-685


title: shl20190501-684

value: LM

value: Y


title: 8.18.21 2 1.5mm 19s

description: UMI Matrix


title: 1.4.21 1 0.5mm 13s

description: UMI Matrix


title: shl20190501-683

value: LR


title: 8.18.21 1 1.5mm 31s

description: UMI Matrix


title: shl20190501-682

value: ER


title: 8.18.21 2 1.75mm 68s

description: UMI Matrix


title: 1.4.21 4 2.5mm 90s

description: UMI Matrix


title: 3.29.22 1 2.25mm 13s

description: UMI Matrix


title: shl20190501-681


title: shl20190501-677


title: shl20190501-676

value: iPRP

value: TR


title: shl20190501-680


title: shl20190501-678


title: shl20190501-675


title: shl20190501-674


title: 8.18.21 2 1.5mm 17s

description: UMI Matrix


title: 1.4.21 4 2.5mm 9s

description: UMI Matrix


title: 8.18.21 1 2.5mm 34s

description: UMI Matrix


title: 1.4.21 4 2.5mm 74s

description: UMI Matrix


title: shl20190501-673


title: 8.18.21 8 0.5mm 63s

description: UMI Matrix


title: 8.18.21 7 0.5mm 80s

description: UMI Matrix


title: 3.29.22 1 1.25mm 3s

description: UMI Matrix


title: 8.18.21 2 1.0mm 13s

description: UMI Matrix


title: 8.18.21 8 0.5mm 66s

description: UMI Matrix


title: shl20190501-670


title: 8.18.21 1 2.5mm 9s

description: UMI Matrix


title: shl20190501-668


title: 1.4.21 2 1.5mm 41s

description: UMI Matrix


title: 8.18.21 1 2.5mm 10s

description: UMI Matrix


title: shl20190501-667


title: 1.4.21 1 0.5mm 22s

description: UMI Matrix


title: shl20190501-666


title: 8.18.21 3 2.25mm 29s

description: UMI Matrix


title: 8.18.21 2 1.0mm 11s

description: UMI Matrix


title: shl20190501-663


title: shl20190501-665


title: 8.18.21 6 2.75mm 35s

description: UMI Matrix


title: 8.18.21 1 2.5mm 8s

description: UMI Matrix


title: 3.29.22 1 1.25mm 65s

description: UMI Matrix


title: shl20190501-664


title: 8.18.21 7 0.5mm 79s

description: UMI Matrix


title: 1.4.21 3 0.5mm 24s

description: UMI Matrix


title: shl20190501-660

value: S


title: shl20190501-662


title: shl20190501-659


title: shl20190501-661


title: 8.18.21 1 1.75mm 61s

description: UMI Matrix


title: 8.18.21 8 0.5mm 72s

description: UMI Matrix


title: shl20190501-672


title: shl20190501-658


title: shl20190501-657

value: RPC/MG

value: cRPC


title: shl20190501-669


title: 8.18.21 8 0.5mm 11s

description: UMI Matrix

value: anther


title: 8.18.21 6 2.75mm 50s

description: UMI Matrix

value: anther single cell


title: shl20190501-656


title: shl20190501-655


title: 8.18.21 1 2.5mm 6s

description: UMI Matrix


title: 7.21 1 2.0mm 56s

description: UMI Matrix


title: shl20190501-654


title: shl20190501-653


title: shl20190501-652


title: 8.18.21 8 0.5mm 18s

description: UMI Matrix


title: 8.18.21 5 1.25mm 12s

description: UMI Matrix


title: 8.18.21 8 0.5mm 19s

description: UMI Matrix


title: shl20190501-649


title: shl20190501-650


title: shl20190501-648


title: 1.4.21 3 0.5mm 14s

description: UMI Matrix


title: 1.4.21 1 0.5mm 59s

description: UMI Matrix


title: 8.18.21 8 0.5mm 95s

description: UMI Matrix


title: 8.18.21 7 0.5mm 71s

description: UMI Matrix


title: shl20190501-646


title: shl20190501-645


title: 8.18.21 8 0.5mm 47s

description: UMI Matrix


title: shl20190501-644


title: shl20190501-647


title: 8.18.21 8 0.5mm 64s

description: UMI Matrix


title: 1.4.21 2 2.5mm 56s

description: UMI Matrix


title: 8.18.21 3 2.25mm 6s

description: UMI Matrix


title: shl20190501-642


title: 1.4.21 4 2.5mm 75s

description: UMI Matrix


title: shl20190501-640


title: 1.4.21 3 0.5mm 86s

description: UMI Matrix


title: 8.18.21 2 1.0mm 15s

description: UMI Matrix


title: 8.18.21 3 2.5mm 9s

description: UMI Matrix


title: shl20190501-637


title: shl20190501-638


title: 1.4.21 3 0.5mm 9s

description: UMI Matrix


title: 1.4.21 2 2.5mm 31s

description: UMI Matrix


title: shl20190501-651


title: 8.18.21 1 1.75mm 6s

description: UMI Matrix


title: shl20190501-634


title: 8.18.21 1 2.5mm 82s

description: UMI Matrix


title: 8.18.21 8 0.5mm 36s

description: UMI Matrix


title: shl20190501-635


title: 8.18.21 2 1.75mm 51s

description: UMI Matrix


title: shl20190501-643


title: 1.4.21 3 0.5mm 77s

description: UMI Matrix


title: 1.4.21 1 0.5mm 6s

description: UMI Matrix


title: shl20190501-636


title: shl20190501-641


title: 7.21 2 0.75mm 50s

description: UMI Matrix


title: shl20190501-631


title: shl20190501-632


title: ds20181001-1084


title: 8.18.21 8 0.5mm 52s

description: UMI Matrix


title: 8.18.21 1 2.5mm 94s

description: UMI Matrix


title: ds20181001-1082


title: ds20181001-1081


title: 8.18.21 2 1.25mm 48s

description: UMI Matrix


title: ds20181001-1083


title: shl20190501-639


title: 8.18.21 1 2.5mm 69s

description: UMI Matrix


title: 8.18.21 3 2.5mm 34s

description: UMI Matrix


title: ds20181001-1080


title: 8.18.21 2 1.75mm 24s

description: UMI Matrix


title: ds20181001-1079


title: 1.4.21 2 2.5mm 16s

description: UMI Matrix


title: ds20181001-1078


title: shl20190501-633


title: 8.18.21 1 2.5mm 1s

description: UMI Matrix


title: 8.18.21 8 0.5mm 6s

description: UMI Matrix


title: 8.18.21 3 2.5mm 21s

description: UMI Matrix


title: ds20181001-1076


title: ds20181001-1072


title: ds20181001-1071


title: ds20181001-1069


title: 1.4.21 2 2.5mm 85s

description: UMI Matrix


title: ds20181001-1073


title: 8.18.21 8 0.5mm 62s

description: UMI Matrix


title: ds20181001-1075


title: 8.18.21 7 0.5mm 64s

description: UMI Matrix


title: 8.18.21 1 2.5mm 16s

description: UMI Matrix


title: ds20181001-1070


title: 3.29.22 1 3.0mm 45s

description: UMI Matrix


title: ds20181001-1066


title: ds20181001-1068


title: ds20181001-1077


title: 8.18.21 2 1.75mm 37s

description: UMI Matrix


title: 1.4.21 1 0.5mm 9s

description: UMI Matrix


title: ds20181001-1064


title: ds20181001-1065


title: ds20181001-1062


title: 8.18.21 8 0.5mm 37s

description: UMI Matrix


title: ds20181001-1063

value: MG


title: 8.18.21 3 2.5mm 29s

description: UMI Matrix


title: 8.18.21 2 1.0mm 6s

description: UMI Matrix


title: 8.18.21 2 1.25mm 62s

description: UMI Matrix


title: 8.18.21 1 2.5mm 63s

description: UMI Matrix


title: ds20181001-1061

value: fetal retina


title: 8.18.21 7 0.5mm 14s

description: UMI Matrix


title: ds20181001-1060

value: FACS


title: 8.18.21 8 0.5mm 20s

description: UMI Matrix


title: ds20181001-1067


title: 8.18.21 2 1.0mm 61s

description: UMI Matrix


title: ds20181001-1059


title: 8.18.21 6 2.75mm 11s

description: UMI Matrix


title: ds20181001-1058


title: ds20181001-1057


title: ds20181001-1056


title: 8.18.21 1 2.5mm 39s

description: UMI Matrix


title: ds20181001-1055


title: 8.18.21 8 0.5mm 46s

description: UMI Matrix


title: 1.4.21 1 0.75mm 31s

description: UMI Matrix


title: ds20181001-1054


title: 8.18.21 5 1.0mm 3s

description: UMI Matrix


title: ds20181001-1052


title: ds20181001-1051


title: 8.18.21 8 0.5mm 33s

description: UMI Matrix


title: ds20181001-1053


title: 8.18.21 3 2.5mm 7s

description: UMI Matrix


title: ds20181001-1049


title: 8.18.21 2 1.25mm 12s

description: UMI Matrix


title: 8.18.21 5 1.25mm 18s

description: UMI Matrix


title: ds20181001-1048


title: 7.21 2 2.0mm 75s

description: UMI Matrix


title: 8.18.21 1 1.5mm 37s

description: UMI Matrix


title: ds20181001-1046


title: ds20181001-1047


title: 7.21 2 0.75mm 59s

description: UMI Matrix


title: 8.18.21 2 1.75mm 9s

description: UMI Matrix


title: 3.29.22 1 3.0mm 5s

description: UMI Matrix


title: ds20181001-1045


title: 8.18.21 8 0.5mm 51s

description: UMI Matrix


title: ds20181001-1044


title: ds20181001-1043


title: 3.29.22 1 3.0mm 59s

description: UMI Matrix


title: ds20181001-1042


title: ds20181001-0768


title: 7.21 2 0.75mm 34s

description: UMI Matrix


title: ds20181001-0767


title: 8.18.21 1 1.75mm 48s

description: UMI Matrix


title: ds20181001-1050


title: ds20181001-0766


title: 8.18.21 8 0.5mm 79s

description: UMI Matrix


title: 8.18.21 8 0.5mm 8s

description: UMI Matrix


title: ds20181001-0764


title: ds20181001-0763


title: 1.4.21 4 2.5mm 20s

description: UMI Matrix


title: 3.29.22 1 1.25mm 20s

description: UMI Matrix


title: ds20181001-0761


title: ds20181001-0765


title: 8.18.21 8 0.5mm 25s

description: UMI Matrix


title: ds20181001-0760


title: 3.29.22 1 1.25mm 78s

description: UMI Matrix


title: 8.18.21 8 0.5mm 69s

description: UMI Matrix


title: 8.18.21 8 0.5mm 81s

description: UMI Matrix


title: ds20181001-0756


title: 8.18.21 1 1.75mm 72s

description: UMI Matrix


title: ds20181001-0758


title: ds20181001-0755


title: ds20181001-0759


title: ds20181001-0754


title: ds20181001-0753


title: ds20181001-0752


title: ds20181001-0762


title: ds20181001-0751


title: 3.29.22 1 3.0mm 23s

description: UMI Matrix


title: 8.18.21 3 2.5mm 36s

description: UMI Matrix


title: 1.4.21 1 1.0mm 64s

description: UMI Matrix


title: 1.4.21 2 2.5mm 22s

description: UMI Matrix


title: ds20181001-0750


title: 8.18.21 2 1.25mm 49s

description: UMI Matrix


title: 8.18.21 3 2.5mm 48s

description: UMI Matrix


title: ds20181001-0749


title: 8.18.21 1 1.5mm 9s

description: UMI Matrix


title: 8.18.21 3 2.5mm 5s

description: UMI Matrix


title: 8.18.21 7 0.5mm 63s

description: UMI Matrix


title: 8.18.21 5 1.25mm 1s

description: UMI Matrix


title: 8.18.21 2 1.25mm 36s

description: UMI Matrix


title: ds20181001-0748


title: 8.18.21 1 1.75mm 54s

description: UMI Matrix


title: ds20181001-0747


title: ds20181001-0746


title: ds20181001-0757


title: 8.18.21 4 2.25mm 37s

description: UMI Matrix


title: ds20181001-0745


title: ds20181001-0744


title: 3.29.22 1 2.25mm 57s

description: UMI Matrix


title: ds20181001-0743


title: 8.18.21 8 0.5mm 13s

description: UMI Matrix


title: ds20181001-0742


title: 1.4.21 2 1.75mm 68s

description: UMI Matrix


title: ds20181001-0741


title: 8.18.21 4 2.25mm 77s

description: UMI Matrix


title: 8.18.21 3 2.25mm 56s

description: UMI Matrix


title: ds20181001-0740


title: 8.18.21 5 1.25mm 35s

description: UMI Matrix


title: 3.29.22 1 3.0mm 37s

description: UMI Matrix


title: 7.21 2 0.75mm 26s

description: UMI Matrix


title: 8.18.21 3 2.25mm 70s

description: UMI Matrix


title: ds20181001-0739


title: ds20181001-0737


title: ds20181001-0738


title: 8.18.21 1 1.75mm 73s

description: UMI Matrix


title: ds20181001-0734


title: 8.18.21 4 2.25mm 65s

description: UMI Matrix


title: 8.18.21 8 0.5mm 88s

description: UMI Matrix


title: ds20181001-0732


title: 8.18.21 4 2.25mm 57s

description: UMI Matrix


title: ds20181001-0733


title: ds20181001-0731


title: 8.18.21 8 0.5mm 75s

description: UMI Matrix


title: ds20181001-0729


title: 8.18.21 2 1.0mm 77s

description: UMI Matrix


title: 8.18.21 1 1.5mm 6s

description: UMI Matrix


title: ds20181001-0730


title: ds20181001-0728


title: 8.18.21 4 2.25mm 20s

description: UMI Matrix


title: 8.18.21 8 0.5mm 49s

description: UMI Matrix


title: ds20181001-0727


title: ds20181001-0736


title: ds20181001-0726


title: 8.18.21 2 1.25mm 32s

description: UMI Matrix


title: ds20181001-0735


title: 3.29.22 1 1.25mm 52s

description: UMI Matrix


title: ds20181001-0725


title: 8.18.21 2 1.5mm 18s

description: UMI Matrix


title: 8.18.21 3 2.25mm 3s

description: UMI Matrix


title: 8.18.21 2 1.0mm 72s

description: UMI Matrix


title: 8.18.21 3 2.25mm 58s

description: UMI Matrix


title: 8.18.21 1 1.75mm 68s

description: UMI Matrix


title: ds20181001-0722


title: ds20181001-0723


title: 8.18.21 4 2.25mm 62s

description: UMI Matrix


title: ds20181001-0720


title: ds20181001-0719


title: 8.18.21 4 2.25mm 24s

description: UMI Matrix


title: 8.18.21 2 1.5mm 9s

description: UMI Matrix


title: ds20181001-0718


title: ds20181001-0384


title: 8.18.21 4 2.25mm 5s

description: UMI Matrix


title: ds20181001-0383


title: 1.4.21 4 2.5mm 34s

description: UMI Matrix


title: 8.18.21 2 1.25mm 55s

description: UMI Matrix


title: ds20181001-0382


title: ds20181001-0381


title: 8.18.21 5 1.25mm 34s

description: UMI Matrix


title: ds20181001-0724


title: 8.18.21 1 1.75mm 40s

description: UMI Matrix


title: ds20181001-0380


title: ds20181001-0379


title: ds20181001-0721


title: 8.18.21 2 1.0mm 51s

description: UMI Matrix


title: ds20181001-0378


title: 8.18.21 8 0.5mm 28s

description: UMI Matrix


title: ds20181001-0377


title: 8.18.21 8 0.5mm 71s

description: UMI Matrix


title: ds20181001-0376


title: 8.18.21 8 0.5mm 50s

description: UMI Matrix


title: 8.18.21 8 0.5mm 38s

description: UMI Matrix


title: ds20181001-0375


title: ds20181001-0373


title: 3.29.22 1 2.25mm 37s

description: UMI Matrix


title: 3.29.22 1 2.25mm 72s

description: UMI Matrix


title: ds20181001-0372


title: ds20181001-0374


title: ds20181001-0717


title: 3.29.22 1 1.5mm 2s

description: UMI Matrix


title: ds20181001-0371


title: ds20181001-0369


title: ds20181001-0370


title: 8.18.21 4 2.25mm 39s

description: UMI Matrix


title: ds20181001-0367


title: 8.18.21 6 2.75mm 66s

description: UMI Matrix


title: ds20181001-0366


title: 8.18.21 4 2.25mm 71s

description: UMI Matrix


title: 8.18.21 8 0.5mm 89s

description: UMI Matrix


title: ds20181001-0368


title: 7.21 2 0.75mm 37s

description: UMI Matrix


title: 8.18.21 3 2.25mm 62s

description: UMI Matrix


title: ds20181001-0364


title: 3.29.22 1 2.25mm 46s

description: UMI Matrix


title: ds20181001-0362


title: 8.18.21 8 0.5mm 93s

description: UMI Matrix


title: ds20181001-0363


title: ds20181001-0365


title: ds20181001-0360


title: 1.4.21 3 0.5mm 74s

description: UMI Matrix


title: ds20181001-0361


title: 8.18.21 2 1.5mm 13s

description: UMI Matrix


title: ds20181001-0359


title: ds20181001-0358

value: N


title: 1.4.21 3 0.5mm 39s

description: UMI Matrix


title: 8.18.21 4 2.25mm 13s

description: UMI Matrix


title: ds20181001-0357


title: 7.21 2 0.75mm 7s

description: UMI Matrix


title: ds20181001-0356


title: 8.18.21 1 2.5mm 31s

description: UMI Matrix


title: 8.18.21 8 0.5mm 40s

description: UMI Matrix


title: ds20181001-0355


title: 8.18.21 3 2.25mm 26s

description: UMI Matrix


title: ds20181001-0354


title: ds20181001-0353


title: 3.29.22 1 1.25mm 46s

description: UMI Matrix


title: 8.18.21 1 2.5mm 58s

description: UMI Matrix


title: ds20181001-0352


title: ds20181001-0351


title: 7.21 2 0.75mm 51s

description: UMI Matrix


title: 3.29.22 1 2.25mm 2s

description: UMI Matrix


title: 8.18.21 4 2.25mm 94s

description: UMI Matrix


title: ds20181001-0348


title: ds20181001-0347


title: 8.18.21 4 2.25mm 23s

description: UMI Matrix


title: 8.18.21 8 0.5mm 23s

description: UMI Matrix


title: 8.18.21 1 1.75mm 13s

description: UMI Matrix


title: ds20181001-0346


title: 8.18.21 2 1.5mm 74s

description: UMI Matrix


title: ds20181001-0345


title: 1.4.21 2 2.25mm 84s

description: UMI Matrix


title: 3.29.22 1 2.25mm 45s

description: UMI Matrix


title: ds20181001-0344


title: ds20181001-0343


title: ds20181001-0342


title: 8.18.21 2 1.25mm 58s

description: UMI Matrix


title: 8.18.21 2 1.0mm 35s

description: UMI Matrix


title: 8.18.21 8 0.5mm 39s

description: UMI Matrix


title: 8.18.21 8 0.5mm 55s

description: UMI Matrix


title: ds20181001-0340


title: 8.18.21 3 2.25mm 24s

description: UMI Matrix


title: ds20181001-0341


title: ds20181001-0339


title: ds20181001-0338


title: 8.18.21 4 2.25mm 68s

description: UMI Matrix


title: 8.18.21 4 2.25mm 56s

description: UMI Matrix


title: 1.4.21 2 2.25mm 88s

description: UMI Matrix


title: ds20181001-0337


title: ds20181001-0349


title: ds20181001-0336


title: ds20181001-0350


title: 8.18.21 4 2.25mm 78s

description: UMI Matrix


title: 8.18.21 1 2.5mm 41s

description: UMI Matrix


title: ds20181001-0334


title: 1.4.21 3 0.5mm 21s

description: UMI Matrix


title: ds20171031_286


title: 8.18.21 3 2.25mm 93s

description: UMI Matrix


title: ds20171031_288


title: ds20171031_287


title: 3.29.22 1 2.25mm 36s

description: UMI Matrix


title: 8.18.21 4 2.25mm 43s

description: UMI Matrix


title: ds20171031_285


title: ds20171031_284


title: ds20171031_283


title: 8.18.21 4 2.25mm 69s

description: UMI Matrix


title: 8.18.21 4 2.25mm 4s

description: UMI Matrix


title: 8.18.21 4 2.25mm 35s

description: UMI Matrix


title: ds20171031_282


title: 8.18.21 5 1.25mm 27s

description: UMI Matrix


title: ds20171031_281


title: 3.29.22 1 2.25mm 54s

description: UMI Matrix


title: 8.18.21 7 0.5mm 9s

description: UMI Matrix


title: ds20171031_279


title: 8.18.21 6 2.75mm 70s

description: UMI Matrix


title: ds20171031_280


title: 8.18.21 8 0.5mm 31s

description: UMI Matrix


title: ds20171031_277


title: ds20171031_278


title: ds20181001-0335


title: 1.4.21 6 2.25mm 17s

description: UMI Matrix


title: 3.29.22 1 3.0mm 19s

description: UMI Matrix


title: 1.4.21 7 1.25mm 11s

description: UMI Matrix


title: ds20171031_274


title: ds20171031_273


title: 1.4.21 2 1.75mm 56s

description: UMI Matrix


title: 3.29.22 1 2.25mm 81s

description: UMI Matrix


title: ds20171031_275


title: ds20171031_272


title: ds20171031_271


title: ds20171031_270


title: 1.4.21 2 2.25mm 73s

description: UMI Matrix


title: ds20171031_269


title: 1.4.21 2 2.25mm 16s

description: UMI Matrix


title: 8.18.21 4 2.25mm 64s

description: UMI Matrix


title: ds20171031_268


title: ds20171031_267


title: 8.18.21 5 1.25mm 91s

description: UMI Matrix


title: ds20171031_266


title: ds20171031_264


title: 8.18.21 7 0.5mm 50s

description: UMI Matrix


title: ds20171031_263


title: 8.18.21 7 0.5mm 6s

description: UMI Matrix


title: ds20171031_276


title: 3.29.22 1 2.25mm 15s

description: UMI Matrix


title: 8.18.21 2 1.5mm 79s

description: UMI Matrix


title: 3.29.22 1 2.25mm 1s

description: UMI Matrix


title: ds20171031_261


title: 8.18.21 7 0.5mm 23s

description: UMI Matrix


title: ds20171031_260


title: 8.18.21 7 0.5mm 49s

description: UMI Matrix


title: 8.18.21 4 2.25mm 48s

description: UMI Matrix


title: ds20171031_259


title: 7.21 2 0.75mm 40s

description: UMI Matrix


title: ds20171031_258


title: 7.21 2 0.75mm 38s

description: UMI Matrix


title: ds20171031_257


title: 8.18.21 4 2.25mm 28s

description: UMI Matrix


title: 8.18.21 4 2.25mm 32s

description: UMI Matrix


title: ds20171031_256


title: 8.18.21 4 2.25mm 96s

description: UMI Matrix


title: 8.18.21 8 0.5mm 80s

description: UMI Matrix


title: ds20171031_252


title: 1.4.21 1 0.5mm 88s

description: UMI Matrix


title: ds20171031_262


title: ds20171031_251


title: 8.18.21 4 2.25mm 67s

description: UMI Matrix


title: ds20171031_250


title: ds20171031_249


title: 8.18.21 4 2.25mm 34s

description: UMI Matrix


title: ds20171031_248


title: ds20171031_247


title: 8.18.21 1 1.75mm 80s

description: UMI Matrix


title: ds20171031_246


title: 3.29.22 1 3.0mm 32s

description: UMI Matrix


title: ds20171031_245


title: 3.29.22 1 2.25mm 76s

description: UMI Matrix


title: ds20171031_255


title: ds20171031_244


title: 8.18.21 1 1.75mm 45s

description: UMI Matrix


title: 8.18.21 2 1.75mm 13s

description: UMI Matrix


title: ds20171031_243


title: ds20171031_242


title: 8.18.21 3 2.75mm 37s

description: UMI Matrix


title: ds20171031_253


title: ds20171031_241


title: 8.18.21 1 1.75mm 3s

description: UMI Matrix


title: 8.18.21 2 1.75mm 79s

description: UMI Matrix


title: 8.18.21 4 2.25mm 87s

description: UMI Matrix


title: ds20171031_240


title: ds20171031_239


title: 8.18.21 1 1.75mm 60s

description: UMI Matrix


title: ds20171031_238


title: 7.21 1 2.0mm 23s

description: UMI Matrix


title: 8.18.21 2 1.0mm 56s

description: UMI Matrix


title: 8.18.21 3 2.25mm 7s

description: UMI Matrix


title: ds20171031_236


title: ds20171031_235


title: 8.18.21 2 1.25mm 41s

description: UMI Matrix


title: ds20171031_234


title: 3.29.22 1 3.0mm 43s

description: UMI Matrix


title: 8.18.21 7 0.5mm 51s

description: UMI Matrix


title: ds20171031_231


title: ds20171031_232


title: 7.21 1 2.0mm 38s

description: UMI Matrix


title: 7.21 2 2.0mm 94s

description: UMI Matrix


title: 8.18.21 2 1.5mm 48s

description: UMI Matrix


title: ds20171031_230


title: 7.21 2 0.75mm 66s

description: UMI Matrix


title: 8.18.21 2 1.75mm 81s

description: UMI Matrix


title: ds20171031_227


title: ds20171031_229


title: ds20171031_228


title: 8.18.21 5 1.25mm 16s

description: UMI Matrix


title: 7.21 1 2.0mm 24s

description: UMI Matrix


title: ds20171031_225


title: ds20171031_237


title: ds20171031_226


title: 7.21 1 2.0mm 32s

description: UMI Matrix


title: 7.21 1 2.0mm 45s

description: UMI Matrix


title: ds20171031_224


title: ds20171031_223


title: 8.18.21 8 0.5mm 82s

description: UMI Matrix


title: ds20171031_221


title: ds20171031_220


title: 8.18.21 6 2.75mm 43s

description: UMI Matrix


title: ds20171031_219


title: 8.18.21 5 1.25mm 29s

description: UMI Matrix


title: 7.21 1 2.0mm 40s

description: UMI Matrix


title: ds20171031_218


title: 8.18.21 7 0.5mm 45s

description: UMI Matrix


title: 7.21 2 2.0mm 35s

description: UMI Matrix


title: ds20171031_217


title: 7.21 2 2.0mm 5s

description: UMI Matrix


title: ds20171031_216


title: ds20171031_214


title: ds20171031_215


title: ds20171031_213


title: 8.18.21 2 1.5mm 10s

description: UMI Matrix


title: 7.21 2 0.75mm 90s

description: UMI Matrix


title: ds20171031_212


title: ds20171031_211


title: ds20171031_222


title: 1.4.21 2.2 2.0mm 57s

description: UMI Matrix


title: 7.21 2 2.0mm 9s

description: UMI Matrix


title: 3.29.22 1 3.0mm 11s

description: UMI Matrix


title: 8.18.21 5 1.25mm 2s

description: UMI Matrix


title: ds20171031_210


title: ds20171031_209


title: ds20171031_207


title: 7.21 1 2.0mm 69s

description: UMI Matrix


title: 7.21 2 2.0mm 90s

description: UMI Matrix


title: 7.21 1 2.0mm 94s

description: UMI Matrix


title: ds20171031_206


title: ds20171031_204


title: ds20171031_205


title: 7.21 1 2.0mm 14s

description: UMI Matrix


title: 7.21 1 2.0mm 85s

description: UMI Matrix


title: 1.4.21 2.4 2.0mm 40s

description: UMI Matrix


title: 8.18.21 7 0.5mm 46s

description: UMI Matrix


title: ds20171031_203


title: ds20171031_202


title: 7.21 2 2.0mm 41s

description: UMI Matrix


title: 7.21 2 2.0mm 25s

description: UMI Matrix


title: ds20171031_200


title: 8.18.21 7 0.5mm 31s

description: UMI Matrix


title: ds20171031_199


title: 8.18.21 2 1.75mm 77s

description: UMI Matrix


title: ds20171031_201


title: ds20171031_198


title: 7.21 1 2.0mm 64s

description: UMI Matrix


title: 8.18.21 7 0.5mm 48s

description: UMI Matrix


title: ds20171031_196


title: ds20171031_195


title: 1.4.21 2 1.75mm 1s

description: UMI Matrix


title: ds20171031_197


title: 7.21 2 2.0mm 24s

description: UMI Matrix


title: 7.21 2 2.0mm 26s

description: UMI Matrix


title: 7.21 1 2.0mm 57s

description: UMI Matrix


title: 7.21 2 2.0mm 1s

description: UMI Matrix


title: ds20171031_193


title: ds20171031_191


title: 3.29.22 1 1.25mm 16s

description: UMI Matrix


title: 8.18.21 8 0.5mm 16s

description: UMI Matrix


title: ds20171031_189


title: ds20171031_190


title: 1.4.21 1.1 2.0mm 81s

description: UMI Matrix


title: ds20171031_186


title: ds20171031_187


title: 3.29.22 1 3.0mm 46s

description: UMI Matrix


title: ds20171031_185


title: 8.18.21 5 1.25mm 5s

description: UMI Matrix


title: ds20171031_192


title: ds20171031_184


title: 7.21 1 2.0mm 13s

description: UMI Matrix


title: 7.21 2 2.0mm 4s

description: UMI Matrix


title: 8.18.21 7 0.5mm 37s

description: UMI Matrix


title: ds20171031_182


title: ds20171031_194


title: ds20171031_188


title: 7.21 1 2.0mm 92s

description: UMI Matrix


title: ds20171031_183


title: 8.18.21 6 2.75mm 2s

description: UMI Matrix


title: ds20171031_180


title: 7.21 1 2.0mm 55s

description: UMI Matrix


title: 7.21 2 0.75mm 29s

description: UMI Matrix


title: ds20171031_178


title: 8.18.21 7 0.5mm 47s

description: UMI Matrix


title: ds20171031_177


title: ds20171031_179


title: 8.18.21 2 1.75mm 48s

description: UMI Matrix


title: ds20171031_176


title: 8.18.21 8 0.5mm 14s

description: UMI Matrix


title: ds20171031_175


title: 7.21 2 2.0mm 76s

description: UMI Matrix


title: 8.18.21 5 1.25mm 64s

description: UMI Matrix


title: ds20171031_174


title: 1.4.21 2.2 2.0mm 76s

description: UMI Matrix


title: ds20171031_172


title: ds20171031_173


title: 7.21 2 2.0mm 74s

description: UMI Matrix


title: 8.18.21 5 1.0mm 66s

description: UMI Matrix


title: 1.4.21 2 1.75mm 63s

description: UMI Matrix


title: ds20171031_181


title: 8.18.21 2 1.25mm 33s

description: UMI Matrix


title: ds20171031_169


title: ds20171031_168


title: 7.21 2 2.0mm 44s

description: UMI Matrix


title: ds20171031_167


title: 7.21 1 2.0mm 75s

description: UMI Matrix


title: 7.21 2 2.0mm 88s

description: UMI Matrix


title: ds20171031_165


title: ds20171031_166


title: 7.21 1 2.0mm 41s

description: UMI Matrix


title: 8.18.21 2 1.0mm 21s

description: UMI Matrix


title: ds20171031_164


title: 8.18.21 2 1.25mm 77s

description: UMI Matrix


title: ds20171031_163


title: ds20171031_162


title: 7.21 1 2.0mm 93s

description: UMI Matrix


title: ds20171031_171


title: ds20171031_170


title: ds20171031_159


title: ds20171031_157


title: 8.18.21 2 1.0mm 81s

description: UMI Matrix


title: 7.21 2 0.75mm 31s

description: UMI Matrix


title: 7.21 2 2.0mm 38s

description: UMI Matrix


title: ds20171031_156


title: ds20171031_155


title: 1.4.21 4 3.0mm 24s

description: UMI Matrix


title: 1.4.21 6 2.0mm 16s

description: UMI Matrix


title: ds20171031_153


title: ds20171031_154


title: 7.21 2 0.75mm 17s

description: UMI Matrix


title: 8.18.21 6 2.75mm 45s

description: UMI Matrix


title: ds20171031_151


title: 7.21 2 2.0mm 16s

description: UMI Matrix


title: ds20171031_152


title: ds20171031_150


title: ds20171031_149


title: 8.18.21 2 1.0mm 40s

description: UMI Matrix


title: 1.4.21 2 2.0mm 5s

description: UMI Matrix


title: ds20171031_158


title: 8.18.21 1 1.5mm 19s

description: UMI Matrix


title: ds20171031_148


title: 3.29.22 1 3.0mm 49s

description: UMI Matrix


title: 1.4.21 3 0.75mm 11s

description: UMI Matrix


title: 7.21 2 0.75mm 36s

description: UMI Matrix


title: ds20171031_146


title: 8.18.21 7 0.5mm 70s

description: UMI Matrix


title: ds20171031_145


title: 1.4.21 2 1.75mm 64s

description: UMI Matrix


title: 8.18.21 6 2.75mm 94s

description: UMI Matrix


title: ds20171031_142


title: ds20171031_144


title: ds20171031_143


title: 8.18.21 6 2.75mm 44s

description: UMI Matrix


title: 3.29.22 1 3.0mm 33s

description: UMI Matrix


title: ds20171031_141


title: ds20171031_140


title: ds20171031_138


title: 8.18.21 1 2.5mm 74s

description: UMI Matrix


title: 7.21 2 0.75mm 44s

description: UMI Matrix


title: ds20171031_139


title: 7.21 2 0.75mm 68s

description: UMI Matrix


title: ds20171031_147


title: 8.18.21 1 1.75mm 87s

description: UMI Matrix


title: ds20171031_136


title: ds20171031_135


title: 8.18.21 1 1.75mm 35s

description: UMI Matrix


title: ds20171031_134


title: 8.18.21 1 1.75mm 47s

description: UMI Matrix


title: ds20171031_131


title: 8.18.21 1 1.75mm 23s

description: UMI Matrix


title: ds20171031_133


title: 8.18.21 1 1.75mm 59s

description: UMI Matrix


title: 1.4.21 1.1 2.0mm 40s

description: UMI Matrix


title: ds20171031_130


title: ds20171031_132


title: 8.18.21 2 1.75mm 23s

description: UMI Matrix


title: ds20171031_129


title: 8.18.21 6 2.75mm 9s

description: UMI Matrix


title: 8.18.21 1 1.75mm 28s

description: UMI Matrix


title: 8.18.21 2 1.75mm 55s

description: UMI Matrix


title: 8.18.21 1 1.75mm 18s

description: UMI Matrix


title: ds20171031_128


title: 8.18.21 1 1.75mm 93s

description: UMI Matrix


title: 7.21 2 0.75mm 27s

description: UMI Matrix


title: ds20171031_126


title: ds20171031_127


title: 8.18.21 2 1.75mm 12s

description: UMI Matrix


title: ds20171031_137


title: ds20171031_124


title: ds20171031_123


title: 7.21 1 2.0mm 12s

description: UMI Matrix


title: ds20171031_125


title: 7.21 2 0.75mm 82s

description: UMI Matrix


title: 7.21 2 2.0mm 40s

description: UMI Matrix


title: 1.4.21 2 1.75mm 67s

description: UMI Matrix


title: 8.18.21 1 1.75mm 89s

description: UMI Matrix


title: ds20171031_122


title: ds20171031_120


title: 8.18.21 1 1.5mm 33s

description: UMI Matrix


title: 7.21 1 2.0mm 51s

description: UMI Matrix


title: ds20171031_119


title: ds20171031_118


title: 8.18.21 1 1.75mm 71s

description: UMI Matrix


title: ds20171031_117


title: 7.21 2 2.0mm 86s

description: UMI Matrix


title: ds20171031_116


title: 8.18.21 8 0.5mm 24s

description: UMI Matrix


title: ds20171031_115


title: ds20171031_113


title: ds20171031_114


title: ds20171031_112


title: 8.18.21 1 1.75mm 37s

description: UMI Matrix


title: ds20171031_111


title: 1.4.21 2 1.75mm 57s

description: UMI Matrix


title: ds20171031_121


title: 8.18.21 2 1.75mm 4s

description: UMI Matrix


title: 7.21 2 0.75mm 60s

description: UMI Matrix


title: 1.4.21 6 1.75mm 61s

description: UMI Matrix


title: ds20171031_109


title: 8.18.21 1 1.75mm 15s

description: UMI Matrix


title: ds20171031_108


title: 8.18.21 1 1.75mm 31s

description: UMI Matrix


title: 8.18.21 1 1.75mm 42s

description: UMI Matrix


title: ds20171031_110


title: ds20171031_106


title: ds20171031_107


title: 1.4.21 2 1.75mm 92s

description: UMI Matrix


title: 8.18.21 6 2.75mm 89s

description: UMI Matrix


title: 8.18.21 6 2.75mm 74s

description: UMI Matrix


title: ds20171031_103


title: 8.18.21 1 1.75mm 19s

description: UMI Matrix


title: 1.4.21 6 1.75mm 1s

description: UMI Matrix


title: ds20171031_102


title: ds20171031_101


title: ds20171031_100


title: ds20171031_099


title: 1.4.21 2 1.75mm 83s

description: UMI Matrix


title: 8.18.21 1 1.75mm 51s

description: UMI Matrix


title: 8.18.21 2 1.75mm 53s

description: UMI Matrix


title: ds20171031_098


title: 1.4.21 2 1.75mm 60s

description: UMI Matrix


title: ds20171031_097


title: ds20171031_038


title: 7.21 2 0.75mm 49s

description: UMI Matrix


title: 8.18.21 2 1.75mm 14s

description: UMI Matrix


title: ds20171031_037


title: 8.18.21 2 1.75mm 41s

description: UMI Matrix


title: 1.4.21 2 1.75mm 75s

description: UMI Matrix


title: 1.4.21 2 1.75mm 88s

description: UMI Matrix


title: ds20171031_035


title: ds20171031_105


title: ds20171031_104


title: 1.4.21 2 1.75mm 65s

description: UMI Matrix


title: ds20171031_031


title: ds20171031_030


title: ds20171031_034


title: 8.18.21 2 1.75mm 92s

description: UMI Matrix


title: ds20171031_029


title: 8.18.21 2 1.75mm 69s

description: UMI Matrix


title: ds20171031_027


title: 8.18.21 1 1.75mm 78s

description: UMI Matrix


title: 8.18.21 1 1.75mm 22s

description: UMI Matrix


title: 7.21 2 0.75mm 8s

description: UMI Matrix


title: ds20171031_025


title: ds20171031_026


title: ds20171031_024


title: 7.21 2 0.75mm 55s

description: UMI Matrix


title: 7.21 2 0.75mm 32s

description: UMI Matrix


title: ds20171031_036


title: 8.18.21 1 1.75mm 77s

description: UMI Matrix


title: 1.4.21 2 1.75mm 34s

description: UMI Matrix


title: 8.18.21 1 1.75mm 29s

description: UMI Matrix


title: ds20171031_023


title: ds20171031_021


title: ds20171031_022


title: 8.18.21 8 0.5mm 30s

description: UMI Matrix


title: ds20171031_015


title: ds20171031_014


title: 8.18.21 2 1.75mm 78s

description: UMI Matrix


title: 8.18.21 2 1.75mm 44s

description: UMI Matrix


title: ds20171031_016


title: ds20171031_028


title: 1.4.21 2 1.75mm 33s

description: UMI Matrix


title: 8.18.21 1 1.75mm 7s

description: UMI Matrix


title: ds20171031_012


title: 8.18.21 2 1.75mm 73s

description: UMI Matrix


title: 8.18.21 2 1.75mm 94s

description: UMI Matrix


title: ds20171031_010


title: ds20171031_008


title: 8.18.21 1 1.75mm 82s

description: UMI Matrix


title: ds20171031_013


title: ds20171031_011


title: ds20171031_007


title: 8.18.21 1 1.75mm 8s

description: UMI Matrix


title: ds20171031_005


title: ds20171031_004


title: 8.18.21 1 1.75mm 39s

description: UMI Matrix


title: 8.18.21 1 1.75mm 52s

description: UMI Matrix


title: ds20171031_003


title: 8.18.21 1 1.75mm 66s

description: UMI Matrix


title: 8.18.21 2 1.75mm 62s

description: UMI Matrix


title: ds20171031_006


title: 1.4.21 2 1.75mm 74s

description: UMI Matrix


title: 3.29.22 1 1.5mm 46s

description: UMI Matrix


title: ds20171031_002


title: ds20171031_001


title: 8.18.21 1 1.75mm 83s

description: UMI Matrix


title: 8.18.21 1 1.75mm 32s

description: UMI Matrix


title: ds20170407-510


title: ds20170407-509


title: 8.18.21 1 1.75mm 57s

description: UMI Matrix


title: 8.18.21 1 1.75mm 64s

description: UMI Matrix


title: ds20171031_009


title: ds20170407-508


title: 3.29.22 1 1.5mm 78s

description: UMI Matrix


title: 8.18.21 2 1.5mm 68s

description: UMI Matrix


title: ds20170407-505


title: 8.18.21 1 1.75mm 20s

description: UMI Matrix


title: ds20170407-504


title: ds20170407-507


title: ds20170407-502


title: ds20170407-506


title: ds20170407-500


title: 7.21 2 2.0mm 78s

description: UMI Matrix


title: ds20170407-501


title: 7.21 1 2.0mm 10s

description: UMI Matrix


title: 7.21 2 2.0mm 33s

description: UMI Matrix


title: 7.21 1 2.0mm 39s

description: UMI Matrix


title: ds20170407-498


title: ds20170407-495


title: ds20170407-497


title: ds20170407-496


title: 7.21 1 2.0mm 52s

description: UMI Matrix


title: 1.4.21 1.1 2.0mm 29s

description: UMI Matrix


title: ds20170407-493


title: 8.18.21 1 1.5mm 11s

description: UMI Matrix


title: 7.21 2 2.0mm 43s

description: UMI Matrix


title: 7.21 1 2.0mm 9s

description: UMI Matrix


title: 7.21 2 2.0mm 18s

description: UMI Matrix


title: 7.21 1 2.0mm 26s

description: UMI Matrix


title: ds20170407-492


title: ds20170407-491


title: ds20170407-489


title: 7.21 1 2.0mm 25s

description: UMI Matrix


title: 7.21 2 2.0mm 37s

description: UMI Matrix


title: 7.21 2 0.75mm 83s

description: UMI Matrix


title: 8.18.21 7 0.5mm 62s

description: UMI Matrix


title: 7.21 1 2.0mm 73s

description: UMI Matrix


title: ds20170407-487


title: 7.21 1 2.0mm 77s

description: UMI Matrix


title: ds20170407-490


title: ds20170407-485


title: ds20170407-484


title: ds20170407-483


title: 7.21 1 2.0mm 37s

description: UMI Matrix


title: ds20170407-486


title: ds20170407-494


title: 8.18.21 2 1.75mm 10s

description: UMI Matrix


title: ds20170407-482


title: 7.21 1 2.0mm 71s

description: UMI Matrix


title: 1.4.21 6 2.0mm 1s

description: UMI Matrix


title: 1.4.21 2.4 2.0mm 57s

description: UMI Matrix


title: 8.18.21 5 1.25mm 68s

description: UMI Matrix


title: ds20170407-481


title: ds20170407-479


title: 1.4.21 6 2.0mm 88s

description: UMI Matrix


title: ds20170407-480


title: 7.21 2 2.0mm 42s

description: UMI Matrix


title: ds20170407-478


title: 3.29.22 1 1.25mm 51s

description: UMI Matrix


title: ds20170407-477


title: 7.21 2 0.75mm 1s

description: UMI Matrix


title: ds20170407-475


title: ds20170407-474


title: 8.18.21 5 1.25mm 44s

description: UMI Matrix


title: ds20170407-473


title: 7.21 2 2.0mm 60s

description: UMI Matrix


title: 1.4.21 1.1 2.0mm 26s

description: UMI Matrix


title: 7.21 2 0.75mm 35s

description: UMI Matrix


title: 1.4.21 2 1.5mm 31s

description: UMI Matrix


title: 1.4.21 2 1.5mm 9s

description: UMI Matrix


title: ds20170407-471


title: ds20170407-472


title: 1.4.21 2 2.0mm 66s

description: UMI Matrix


title: ds20170407-469


title: ds20170407-466


title: 8.18.21 2 1.5mm 96s

description: UMI Matrix


title: 3.29.22 1 1.5mm 56s

description: UMI Matrix


title: 1.4.21 6 1.5mm 3s

description: UMI Matrix


title: ds20170407-465


title: 8.18.21 1 1.5mm 29s

description: UMI Matrix


title: ds20170407-467


title: 8.18.21 2 1.5mm 35s

description: UMI Matrix


title: ds20170407-464


title: 8.18.21 1 1.5mm 25s

description: UMI Matrix


title: 3.29.22 1 1.5mm 23s

description: UMI Matrix


title: ds20170407-476


title: ds20170407-461


title: ds20170407-462


title: ds20170407-463


title: 1.4.21 2 1.5mm 6s

description: UMI Matrix


title: ds20170407-470


title: 8.18.21 1 1.5mm 70s

description: UMI Matrix


title: 1.4.21 2 1.5mm 28s

description: UMI Matrix


title: ds20170407-460


title: ds20170407-458


title: ds20170407-457


title: ds20170407-459


title: ds20170407-456


title: ds20170407-455


title: ds20170407-454


title: 3.29.22 1 1.5mm 38s

description: UMI Matrix


title: 8.18.21 1 1.5mm 46s

description: UMI Matrix


title: ds20170407-452


title: 3.29.22 1 1.5mm 93s

description: UMI Matrix


title: 8.18.21 1 1.5mm 61s

description: UMI Matrix


title: 8.18.21 2 1.5mm 25s

description: UMI Matrix


title: 1.4.21 2 1.5mm 37s

description: UMI Matrix


title: ds20170407-453


title: ds20170407-451


title: ds20170407-449


title: ds20170407-450


title: 8.18.21 2 1.5mm 50s

description: UMI Matrix


title: 8.18.21 2 1.75mm 7s

description: UMI Matrix


title: ds20170407-448


title: 1.4.21 2 1.5mm 29s

description: UMI Matrix


title: ds20170407-447


title: 1.4.21 6 1.5mm 51s

description: UMI Matrix


title: 1.4.21 2 1.5mm 82s

description: UMI Matrix


title: 8.18.21 2 1.5mm 4s

description: UMI Matrix


title: 8.18.21 1 1.5mm 51s

description: UMI Matrix


title: ds20170407-446


title: 8.18.21 1 1.5mm 71s

description: UMI Matrix


title: ds20170407-443


title: ds20170407-444


title: ds20170407-445


title: ds20170407-440


title: ds20170407-442


title: 8.18.21 1 1.5mm 4s

description: UMI Matrix


title: 8.18.21 2 1.5mm 65s

description: UMI Matrix


title: ds20170407-441


title: 8.18.21 2 1.5mm 24s

description: UMI Matrix


title: 8.18.21 1 1.5mm 52s

description: UMI Matrix


title: ds20170407-437


title: ds20170407-438


title: ds20170407-436


title: 3.29.22 1 1.5mm 28s

description: UMI Matrix


title: 8.18.21 1 1.5mm 90s

description: UMI Matrix


title: ds20170407-434


title: 8.18.21 2 1.5mm 58s

description: UMI Matrix


title: ds20170407-433


title: 1.4.21 6 1.5mm 85s

description: UMI Matrix


title: ds20170407-432


title: 8.18.21 2 1.5mm 12s

description: UMI Matrix


title: 8.18.21 1 1.5mm 83s

description: UMI Matrix


title: ds20170407-431


title: 3.29.22 1 1.5mm 51s

description: UMI Matrix


title: 8.18.21 2 1.5mm 32s

description: UMI Matrix


title: ds20170407-430


title: ds20170407-429


title: ds20170407-439


title: 1.4.21 2 2.0mm 26s

description: UMI Matrix


title: 8.18.21 1 1.5mm 20s

description: UMI Matrix


title: 8.18.21 2 1.5mm 64s

description: UMI Matrix


title: ds20170407-427


title: ds20170407-428


title: ds20170407-435


title: 8.18.21 1 1.5mm 22s

description: UMI Matrix


title: 3.29.22 1 1.5mm 33s

description: UMI Matrix


title: 8.18.21 1 1.5mm 5s

description: UMI Matrix


title: ds20170407-426


title: ds20170407-424


title: ds20170407-425


title: 8.18.21 3 2.25mm 8s

description: UMI Matrix


title: ds20170407-423


title: 3.29.22 1 1.25mm 49s

description: UMI Matrix


title: 8.18.21 3 2.25mm 87s

description: UMI Matrix


title: ds20170407-421


title: 7.21 2 0.75mm 33s

description: UMI Matrix


title: ds20170407-420


title: 8.18.21 3 2.25mm 12s

description: UMI Matrix


title: 8.18.21 3 2.25mm 41s

description: UMI Matrix


title: 8.18.21 2 1.5mm 75s

description: UMI Matrix


title: 3.29.22 1 1.25mm 48s

description: UMI Matrix


title: 8.18.21 3 2.25mm 43s

description: UMI Matrix


title: ds20170407-416


title: ds20170407-415


title: ds20170407-417


title: 8.18.21 3 2.25mm 60s

description: UMI Matrix


title: 8.18.21 3 2.25mm 71s

description: UMI Matrix


title: 8.18.21 3 2.25mm 45s

description: UMI Matrix


title: ds20170407-412


title: ds20170407-414


title: 3.29.22 1 2.25mm 3s

description: UMI Matrix


title: 3.29.22 1 2.25mm 84s

description: UMI Matrix


title: 3.29.22 1 2.25mm 41s

description: UMI Matrix


title: 3.29.22 1 2.25mm 19s

description: UMI Matrix


title: ds20170407-419


title: ds20170407-413


title: ds20170407-410


title: ds20170407-409


title: ds20170407-406


title: ds20170407-411


title: 8.18.21 3 2.25mm 28s

description: UMI Matrix


title: ds20170407-408


title: ds20170407-418


title: 8.18.21 3 2.25mm 25s

description: UMI Matrix


title: ds20170407-407


title: ds20170407-405


title: 3.29.22 1 2.25mm 33s

description: UMI Matrix


title: ds20170407-404


title: 1.4.21 1 1.25mm 83s

description: UMI Matrix


title: 3.29.22 1 2.25mm 69s

description: UMI Matrix


title: ds20170407-403


title: 1.4.21 6 2.25mm 1s

description: UMI Matrix


title: ds20170407-402


title: 8.18.21 3 2.25mm 23s

description: UMI Matrix


title: ds20170407-401


title: 3.29.22 1 2.25mm 47s

description: UMI Matrix


title: 8.18.21 3 2.5mm 63s

description: UMI Matrix


title: ds20170407-397


title: 8.18.21 5 1.25mm 30s

description: UMI Matrix


title: 8.18.21 3 2.5mm 20s

description: UMI Matrix


title: 8.18.21 1 2.5mm 70s

description: UMI Matrix


title: 3.29.22 1 1.25mm 84s

description: UMI Matrix


title: 8.18.21 3 2.5mm 80s

description: UMI Matrix


title: 3.29.22 1 2.25mm 85s

description: UMI Matrix


title: ds20170407-379


title: ds20170407-380


title: ds20170407-385


title: 8.18.21 3 2.5mm 70s

description: UMI Matrix


title: ds20170407-384


title: ds20170407-390


title: 8.18.21 1 2.5mm 29s

description: UMI Matrix


title: ds20170407-389


title: 8.18.21 1 2.5mm 56s

description: UMI Matrix


title: 8.18.21 3 2.5mm 19s

description: UMI Matrix


title: 8.18.21 3 2.5mm 47s

description: UMI Matrix


title: ds20170407-378


title: ds20170407-376


title: 8.18.21 2 1.25mm 56s

description: UMI Matrix


title: ds20170407-400


title: ds20170407-374


title: 8.18.21 2 1.25mm 69s

description: UMI Matrix


title: 8.18.21 3 2.5mm 18s

description: UMI Matrix


title: ds20170407-375


title: ds20170407-373


title: ds20170407-372


title: 8.18.21 1 2.5mm 79s

description: UMI Matrix


title: ds20170407-371


title: 8.18.21 3 2.5mm 31s

description: UMI Matrix


title: ds20170407-370


title: 8.18.21 3 2.5mm 46s

description: UMI Matrix


title: 8.18.21 3 2.75mm 90s

description: UMI Matrix


title: ds20170407-377


title: 1.4.21 1 1.25mm 4s

description: UMI Matrix


title: ds20170407-368


title: ds20170407-369


title: ds20170407-366


title: ds20170407-367


title: 8.18.21 3 2.75mm 76s

description: UMI Matrix


title: ds20170407-364


title: 8.18.21 3 2.75mm 2s

description: UMI Matrix


title: ds20170407-362


title: 8.18.21 3 2.75mm 82s

description: UMI Matrix


title: ds20170407-363


title: 3.29.22 1 1.25mm 5s

description: UMI Matrix


title: 3.29.22 1 1.25mm 83s

description: UMI Matrix


title: ds20170407-361


title: 1.4.21 1 1.25mm 81s

description: UMI Matrix


title: ds20170407-359


title: 8.18.21 3 2.75mm 21s

description: UMI Matrix


title: ds20170407-358


title: 1.4.21 1 1.25mm 60s

description: UMI Matrix


title: 8.18.21 5 1.25mm 84s

description: UMI Matrix


title: ds20170407-356


title: ds20170407-365


title: 8.18.21 2 1.25mm 78s

description: UMI Matrix


title: 8.18.21 5 1.25mm 93s

description: UMI Matrix


title: ds20170407-353


title: 8.18.21 3 2.75mm 13s

description: UMI Matrix


title: ds20170407-352


title: ds20170407-355


title: ds20170407-354


title: 8.18.21 3 2.75mm 56s

description: UMI Matrix


title: ds20170407-351


title: 8.18.21 2 1.25mm 66s

description: UMI Matrix


title: ds20170407-349


title: 8.18.21 5 1.25mm 59s

description: UMI Matrix


title: 8.18.21 5 1.25mm 17s

description: UMI Matrix


title: ds20170407-348


title: ds20170407-350


title: 8.18.21 5 1.25mm 8s

description: UMI Matrix


title: 1.4.21 1 1.25mm 85s

description: UMI Matrix


title: ds20170407-347


title: 8.18.21 5 1.25mm 50s

description: UMI Matrix


title: ds20170407-346


title: ds20170407-357


title: ds20170407-345


title: ds20170407-360


title: 1.4.21 1 1.25mm 82s

description: UMI Matrix


title: ds20170407-344


title: 3.29.22 1 1.25mm 13s

description: UMI Matrix


title: 8.18.21 2 1.25mm 68s

description: UMI Matrix


title: ds20170407-343


title: 8.18.21 2 1.25mm 42s

description: UMI Matrix


title: 8.18.21 2 1.25mm 81s

description: UMI Matrix


title: ds20170407-341


title: 1.4.21 1 1.0mm 17s

description: UMI Matrix


title: 8.18.21 5 1.25mm 15s

description: UMI Matrix


title: ds20170407-340


title: ds20170407-342


title: 1.4.21 1 1.0mm 65s

description: UMI Matrix


title: 8.18.21 2 1.25mm 30s

description: UMI Matrix


title: ds20170407-339


title: 8.18.21 5 1.0mm 53s

description: UMI Matrix


title: 8.18.21 5 1.0mm 9s

description: UMI Matrix


title: ds20170407-337


title: ds20170407-336


title: ds20170407-335


title: ds20170407-338


title: 8.18.21 2 1.0mm 70s

description: UMI Matrix


title: ds20170407-333


title: 8.18.21 5 1.0mm 37s

description: UMI Matrix


title: 8.18.21 5 1.0mm 21s

description: UMI Matrix


title: ds20170407-332


title: 8.18.21 5 1.0mm 33s

description: UMI Matrix


title: 8.18.21 5 1.0mm 59s

description: UMI Matrix


title: ds20170407-331


title: 8.18.21 2 1.0mm 17s

description: UMI Matrix


title: 8.18.21 5 1.0mm 50s

description: UMI Matrix


title: ds20170407-328


title: 8.18.21 5 1.0mm 69s

description: UMI Matrix


title: 8.18.21 5 1.0mm 63s

description: UMI Matrix


title: ds20170407-327


title: ds20170407-330


title: ds20170407-324


title: 8.18.21 2 1.0mm 84s

description: UMI Matrix


title: ds20170407-329


title: 8.18.21 3 2.75mm 71s

description: UMI Matrix


title: ds20170407-326


title: ds20170407-325


title: 8.18.21 5 1.0mm 2s

description: UMI Matrix


title: ds20170407-323


title: 8.18.21 5 1.0mm 4s

description: UMI Matrix


title: 8.18.21 5 1.0mm 68s

description: UMI Matrix


title: ds20170407-322


title: ds20170407-334


title: 8.18.21 2 1.0mm 20s

description: UMI Matrix


title: 8.18.21 5 1.0mm 78s

description: UMI Matrix


title: ds20170407-321


title: ds20170407-320


title: ds20170407-319


title: 7.21 2 0.75mm 24s

description: UMI Matrix


title: 8.18.21 2 1.0mm 90s

description: UMI Matrix


title: 8.18.21 2 1.0mm 80s

description: UMI Matrix


title: ds20170407-318


title: ds20170407-317


title: 8.18.21 2 1.0mm 4s

description: UMI Matrix


title: ds20170407-315


title: ds20170407-313


title: 8.18.21 2 1.0mm 87s

description: UMI Matrix


title: 7.21 5 0.75mm 9s

description: UMI Matrix


title: 8.18.21 2 1.0mm 1s

description: UMI Matrix


title: ds20170407-316


title: ds20170407-314


title: 20200312-DS-dissected-82


title: 7.21 5 0.75mm 17s

description: UMI Matrix


title: 1.4.21 3 1.0mm 27s

description: UMI Matrix


title: 20200312-DS-dissected-81


title: 20200312-DS-dissected-83


title: 20200312-DS-dissected-78


title: 7.21 5 0.75mm 28s

description: UMI Matrix


title: 20200312-DS-dissected-77


title: 20200312-DS-dissected-80


title: 20200312-DS-dissected-79


title: 1.4.21 3 0.75mm 57s

description: UMI Matrix


title: 1.4.21 3 0.75mm 15s

description: UMI Matrix


title: 7.21 5 0.75mm 86s

description: UMI Matrix


title: 20200312-DS-dissected-76


title: 7.21 5 0.75mm 14s

description: UMI Matrix


title: 20200312-DS-dissected-75


title: 8.18.21 2 1.0mm 88s

description: UMI Matrix


title: 7.21 5 0.75mm 41s

description: UMI Matrix


title: 20200312-DS-dissected-74


title: 1.4.21 3 0.75mm 81s

description: UMI Matrix


title: 8.18.21 2 1.0mm 64s

description: UMI Matrix


title: 7.21 5 0.75mm 74s

description: UMI Matrix


title: 20200312-DS-dissected-73


title: 7.21 2 0.75mm 41s

description: UMI Matrix


title: 20200312-DS-dissected-72


title: 7.21 2 0.75mm 25s

description: UMI Matrix


title: 7.21 2 0.75mm 65s

description: UMI Matrix


title: 20200312-DS-dissected-67


title: 7.21 5 0.75mm 16s

description: UMI Matrix


title: 20200312-DS-dissected-66


title: 7.21 2 0.75mm 14s

description: UMI Matrix


title: 20200312-DS-dissected-71


title: 7.21 2 0.75mm 13s

description: UMI Matrix


title: 20200312-DS-dissected-69


title: 7.21 2 0.75mm 9s

description: UMI Matrix


title: 7.21 2 0.75mm 16s

description: UMI Matrix


title: 20200312-DS-dissected-65


title: 20200312-DS-dissected-70


title: 20200312-DS-dissected-68


title: 8.18.21 8 0.5mm 96s

description: UMI Matrix


title: 8.18.21 3 2.75mm 14s

description: UMI Matrix


title: 8.18.21 3 2.75mm 38s

description: UMI Matrix


title: 7.21 2 0.75mm 58s

description: UMI Matrix


title: 20200312-DS-dissected-61


title: 20200312-DS-dissected-60


title: ZicR4H

city: Geneva

first: Celine

last: Delucinge

address: 1 rue Michel Servet

department: iGE3 Genomics Platform

country: Switzerland

institute: University of Geneva

data_processing:
Illumina Casava2.2 software used for basecalling.
Sequenced reads were mapped to Hydra whole genome using Salmon with default parameters
Transcript quantification was produced by Salmon
Normalization and differential expression analysis were performed with DESeq2 (v.1.26.0)
Genome_build: Hydra vulgaris genome (Jussy reference) https://www.ncbi.nlm.nih.gov/nuccore/GGKF00000000
source of transcript information = http://129.194.56.90/STable_Supp_clustering_homeostatic_data_2018-04-20.xlsx
Supplementary_files_format_and_content: tab-delimited text files include rawcount values for each Sample.

organism: Hydra vulgaris

source_name: entire animal

growth_protocol: Hydra vulgaris Basel1 were maintained in Hydra medium (HM) (1 mM NaCl, 1 mM CaCl2, 0.1 mM KCl, 0.1 mM MgSO4, 1 mM Tris pH=7.6). The animals were fed two to three times per week with freshly hatched Artemia nauplii and starved for 4 days before starting the experiments.

extract_protocol:
Total RNA was extracted from head and body column tissue of control and Zic4 RNAi animals. 20 Hydra were used per condition and RNA extracted with the E.Z.N.A. total RNA kit I (Omega), following the manufacturer’s instructions.
RNA libraries were prepared for sequencing using Illumina TruSeqHT stranded mRNA kit

treatment_protocol: Intact Hydra were electroporated four times every other day and RNA extracted one day after the last electroporation.

value: Zic4 RNAi

value: head


title: ZicR4BC

value: body column


title: 20200312-DS-dissected-59

value: Y


title: 20200312-DS-dissected-64

value: LM


title: ZicR3H


title: ZicR3BC


title: 20200312-DS-dissected-63

value: ER


title: ZicR2H


title: 20200312-DS-dissected-57

value: LR


title: ZicR2BC


title: 20200312-DS-dissected-56


title: ZicR1H


title: 20200312-DS-dissected-54


title: 20200312-DS-dissected-62


title: 20200312-DS-dissected-52


title: 20200312-DS-dissected-53


title: ctrR4H

value: wild-type


title: ctrR4BC


title: 20200312-DS-dissected-49


title: ZicR1BC


title: 20200312-DS-dissected-51


title: 20200312-DS-dissected-47


title: 20200312-DS-dissected-46

value: iPRP


title: ctrR3H


title: 20200312-DS-dissected-48


title: ctrR2H


title: ctrR2BC


title: 20200312-DS-dissected-50


title: ctrR3BC


title: 20200312-DS-dissected-45


title: 20200312-DS-dissected-44


title: ctrR1H


title: 20200312-DS-dissected-43


title: 20200312-DS-dissected-42


title: 20200312-DS-dissected-41


title: 20200312-DS-dissected-38


title: 20200312-DS-dissected-36


title: 20200312-DS-dissected-40


title: Liver - IRhepKO_RF_ZT20 - Rep3

type: RNA

city: Toulouse

first: Hervé

last: Guillou

address: 180 Chemin de Tournefeuille

department: ToxAlim

country: France

institute: INRAE

hyb_protocol: 600 ng of Cy3-labelled cRNA (specific activity >6 pmol Cy3/µg cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 25 µl containing 10x Agilent fragmentation buffer and 25x Agilent blocking agent following the manufacturer's instructions (Agilent Technologies, Santa Clara, CA). On completion of the fragmentation reaction, 25 µl of 2x Agilent hybridization buffer was added to the fragmentation mixture and hybridized to SurePrint G3 Mouse GE v2 microarray (8X60K, Design 074809  enclosed in Agilent SureHyb-enabled hybridization chambers for 17 hours at 65°C in a rotating Agilent hybridization oven. After hybridization, microarrays were washed sequentially in Wash buffer 1 (Agilent Technologies, 1 min) and Wash buffer 2 (Agilent Technologies, 37°C, 1 min).

scan_protocol: Slides were scanned immediately after washing on a Agilent G2505C Microarray Scanner with Agilent Scan Control A.8.5.1 software

data_processing: The scanned images were analyzed with Feature Extraction Software 10.10.1.1 (Agilent Technologies, Santa Clara, CA) using default parameters (protocol GE1_1010_Sep10 and Grid: 074809_D_F_20150624). All subsequent data analyses were done under R (www.r-project.org) using packages of Bioconductor (www.bioconductor.org). Raw data (median of pixels intensity) were imported into R using the read.maimages function from the limma package with the following weight function (assigning a weight of 1 or 0 to each spot): myfunw<-function(x) {okType<-x$ControlType==0; okFoundGreen<-x$gIsFound==1; okPos=x$gIsPosAndSignif==1; okWellAbove<- x$gIsWellAboveBG==1; as.numeric(okType & okFoundGreen & okPos & okWellAbove);} We selected the spots with a minimal weight of 1 for 58 out of 72 microarrays or with a minimal weight of 2 per group from at least one experimental group. At this step, 40192 spots out of 62976 were selected.  The mean signal of the 24 first samples, 24 next and 24 last ones were substracted to individuals signals to correct the batch effect of the 3 serials (characteristics:WashBatch) observed during the microarray washing procedure. Data were then stored in an ExpressionSet object and normalized by the quantile method using the normalize.quantiles function from the preprocessCore R library. Replicated probes on the array (identical ProbeName) were resolved by taking the median normalized signal of each set of replicated probes. The resulting matrix has 37528 rows each corresponding to a unique ProbeName (provided as data Matrix).

organism: Mus musculus

source_name: Liver

label_protocol: For each sample, Cyanine-3 (Cy3) labeled cRNA was prepared from 200 ng of total RNA using the One-Color Quick Amp Labeling kit (Agilent Technologies, Santa Clara, CA) according to the manufacturer's instructions, followed by Agencourt RNAClean XP (Agencourt Bioscience Corporation, Beverly, Massachusetts) purification. Dye incorporation and cRNA yield were checked using Dropsense™ 96 UV/VIS droplet reader (Trinean, Belgium).

growth_protocol: All mice were fed a standard rodent diet (Safe 04 U8220G10R) and housed under controlled temperature (21-23°C) and light (12-h light/12-h dark) conditions : lights were turned on at Zeitgeber time (ZT) 0 and turned off at ZT12.

extract_protocol: Total liver RNA was extracted using TRI Reagent (Molecular Research Center, Inc., Cincinnati, OH, USA).

treatment_protocol: Feeding was either ad libitum (AdLib) or only during the day (Restricted feeding = RF).

value: IRhepKO

tag: feeding

value: RF

tag: time

tag: washbatch


title: 20200312-DS-dissected-37

value: S


title: 20200312-DS-dissected-35


title: 20200312-DS-dissected-31


title: 20200312-DS-dissected-39


title: 20200312-DS-dissected-30


title: 20200312-DS-dissected-28


title: Liver - IRhepWT_RF_ZT16 - Rep1

value: IRhepWT


title: Liver - IRhepKO_AdLib_ZT20 - Rep1

value: AdLib


title: Liver - IRhepWT_AdLib_ZT08 - Rep1


title: 20200312-DS-dissected-34

value: fetal retina


title: 20200312-DS-dissected-32

value: FACS


title: Liver - IRhepWT_AdLib_ZT16 - Rep1


title: Liver - IRhepWT_AdLib_ZT12 - Rep3


title: Liver - IRhepKO_AdLib_ZT0 - Rep3


title: 20200312-DS-dissected-26


title: 20200312-DS-dissected-27


title: 20200312-DS-dissected-33


title: Liver - IRhepKO_RF_ZT04 - Rep1


title: 20200312-DS-dissected-25

value: RPC/MG

value: cRPC


title: Liver - IRhepKO_RF_ZT16 - Rep3


title: Liver - IRhepWT_RF_ZT12 - Rep5


title: Liver - IRhepKO_AdLib_ZT16 - Rep2


title: Liver - IRhepKO_AdLib_ZT20 - Rep4


title: 20200312-DS-dissected-29


title: Liver - IRhepWT_RF_ZT20 - Rep5


title: 20200312-DS-dissected-23


title: 20200312-DS-dissected-24


title: Liver - IRhepKO_RF_ZT08 - Rep3


title: Liver - IRhepWT_RF_ZT0 - Rep2


title: Liver - IRhepWT_AdLib_ZT04 - Rep3


title: Liver - IRhepKO_AdLib_ZT08 - Rep4


title: 20200312-DS-dissected-22


title: 20200312-DS-dissected-21


title: Liver - IRhepWT_AdLib_ZT16 - Rep4


title: Liver - IRhepKO_AdLib_ZT0 - Rep1


title: Liver - IRhepWT_RF_ZT12 - Rep2


title: 20200312-DS-dissected-20

value: TR


title: 20200312-DS-dissected-19


title: 20200312-DS-dissected-14

value: MG


title: 20200312-DS-dissected-16

value: Y


title: 20200312-DS-dissected-18

value: LM


title: 20200312-DS-dissected-13


title: 20200312-DS-dissected-17

value: ER


title: 20200312-DS-dissected-12


title: 20200312-DS-dissected-11


title: 20200312-DS-dissected-10


title: Liver - IRhepWT_AdLib_ZT04 - Rep4


title: Liver - IRhepKO_RF_ZT20 - Rep1


title: 20200312-DS-dissected-09


title: 20200312-DS-dissected-15


title: 20200312-DS-dissected-08


title: Liver - IRhepKO_RF_ZT0 - Rep5


title: Liver - IRhepKO_RF_ZT16 - Rep2


title: Liver - IRhepWT_RF_ZT08 - Rep4


title: Liver - IRhepKO_AdLib_ZT12 - Rep2


title: 20200312-DS-dissected-07


title: Liver - IRhepWT_RF_ZT04 - Rep5


title: 20200312-DS-dissected-06


title: Liver - IRhepKO_AdLib_ZT04 - Rep1


title: Liver - IRhepKO_RF_ZT12 - Rep5


title: Liver - IRhepWT_RF_ZT04 - Rep1


title: Liver - IRhepWT_RF_ZT16 - Rep2


title: Liver - IRhepWT_AdLib_ZT20 - Rep4


title: 20200312-DS-dissected-04


title: Liver - IRhepKO_AdLib_ZT04 - Rep4


title: Liver - IRhepWT_AdLib_ZT0 - Rep4


title: 20200312-DS-dissected-03


title: 20200312-DS-dissected-02


title: 20200312-DS-dissected-05


title: Liver - IRhepKO_AdLib_ZT08 - Rep1


title: Liver - IRhepKO_RF_ZT08 - Rep1


title: Liver - IRhepWT_AdLib_ZT12 - Rep2


title: Liver - IRhepKO_RF_ZT0 - Rep1


title: Liver - IRhepWT_RF_ZT08 - Rep3


title: MCF7 overexpressing NLS-SOD2 Repetition 2

city: Chicago

first: Matthew

middle: J.

last: Schipma

state: IL

address: 750 N. Lake Shore Drive

department: Biochemistry and Molecular Genetics

institute: Northwestern University

data_processing:
Adapters were trimmed from reads using cutadapt version 1.13
Trimmed reads were aligned using STAR version 020201
Gene counting was performed using htseq-count version 0.6.1p1
Differential expression was performed using DESeq2 version 1.14.1
Assembly: hg38
Supplementary files format and content: raw counts

extract_protocol:
RNA was harvested using Rneasy mini plus kit (Qiagen)
One thousand nanogram of total RNA was used to construct RNA-seq library using Illumina TruSeq stranded mRNA library prep kit (Illumina, 20020595) according to manufacturer’s protocol

value: breast cancer cells

value: overexpression NLS-SOD2


title: MCF7 overexpressing NLS-SOD2 Repetition 4


title: MCF7 overexpressing NLS-SOD2 Repetition 3


title: MCF7 overexpressing NLS-SOD2 Repetition 1


title: Liver - IRhepWT_RF_ZT20 - Rep3


title: Liver - IRhepKO_RF_ZT04 - Rep3


title: MCF7 overexpressing WT-SOD2 Repetition 2

value: overexpression WT-SOD2


title: MCF7 overexpressing WT-SOD2 Repetition 3


title: MCF7 overexpressing WT-SOD2 Repetition 1


title: Liver - IRhepWT_AdLib_ZT20 - Rep1


title: MCF7 Control Repetition 4

value: WT


title: Liver - IRhepWT_AdLib_ZT08 - Rep2


title: Liver - IRhepKO_RF_ZT12 - Rep1

value: IRhepKO

value: RF


title: Liver - IRhepWT_AdLib_ZT12 - Rep1

value: IRhepWT


title: Liver - IRhepWT_RF_ZT0 - Rep5


title: Liver - IRhepWT_RF_ZT20 - Rep4


title: Liver - IRhepWT_RF_ZT12 - Rep4


title: MCF7 Control Repetition 3


title: Liver - IRhepKO_AdLib_ZT16 - Rep4

value: AdLib


title: 20200312-DS-dissected-01

value: fetal retina


title: MCF7 Control Repetition 2


title: MCF7 overexpressing WT-SOD2 Repetition 4


title: MCF7 Control Repetition 1


title: SK_ATAC_ASA_REP2

first: Sonia

middle: S

last: Kupfer

department: Human Genetics

institute: University of Chicago

data_processing:
ATAC-seq fastq reads aligned with bwa mem (v 0.7.17)
ATAC-seq read filtering performed with samtools (v 1.10)
ATAC-seq peak calling performed with MACS2 (v 2.1.0)
ATAC-seq differential peak calling performed with R packages DiffBind and edgeR
ATAC-seq motif enrichment and peak annotation performed with HOMER (v 4.11.1). Differential transcription activity assessed with diffTF (v 1.8).
RNA-seq equence alignment and gene expression value estimation was performed using RSEM (v.1.3.1) using the STAR aligner in paired-end mode.
RNA-seq differential expression analysis was performed with the R package DESeq2
Assembly: RNA-seq reads were aligned to the transcriptome reference, which was generated from the 1000genomes Phase2 Reference Genome Sequence (hs37d5) and transcript annotations from the Gencode comprehensive gene annotation GTF (Release 29). ATAC-seq reads were aligned to the Homo_sapiens_assembly38.fasta assembly (downloaded from the UCSC Genome Browser website)
Supplementary files format and content: peak files are MACS2 outputted narrowPeak files for treated and untreated ATAC-seq samples

source_name: colonic organoid

growth_protocol: Organoids were derived using a protocol adapted from Sato et al 2011

extract_protocol:
RNA-seq: The organoids were harvested using cold Advanced DMEM, pipetted up and down 10 times, moved to centrifuge tube, and then spun at 400 g for 5 min at 4°C. Upper media and Biomedical engineering (BME) were carefully aspirated and discarded. mRNA was then isolated from cells using the RNeasy® Plus Mini Kit (Qiagen) according to the manufacturer’s protocol. ATAC-seq: Cells were  treated using the Omni-ATAC protocol17 with some modifications. Briefly, the cells were treated with lysis buffer (10 mM Tris-HCl pH 7.4, 10 mM NaCl, 3 mM MgCl2, 0.1% IGEPAL CA-630) and then suspended in the transposition reaction mix (50% TD Tagment DNA Buffer, 5% TDE1 Tagment DNA Enzyme, 33% PBS) for 30 min
RNA-seq: RNA-seq libraries were prepared using Illumina mRNA TruSeq Kits as protocolled by Illumina. ATAC-seq: Libraries were prepared using the Nextera DNA CD Idx (Illumina 20018708).

treatment_protocol: After 24 hours of culturing in the basal media (which did not contain ASA), organoids were treated with either 3 mM ASA or vehicle control (0.1% DMSO) for 24 hours. The treatments were performed in triplicate.

tag: sample type

value: organoid

value: rectosigmoid mucosa

value: ASA 24 hrs


title: SK_ATAC_DMSO_REP3

value: DMSO control 24 hrs


title: SK_ATAC_ASA_REP3


title: SK_ATAC_ASA_REP1


title: SK_ATAC_DMSO_REP2


title: SK_ATAC_DMSO_REP1


title: SF_control_rep2_bulkRNAseq

city: Schlieren

first: Caroline

last: Ospelt

address: Wagistrasse 14

department: Department of Rheumatology

institute: University Hospital Zurich

description:
RNAseq_data.xlsx
20161216.A-361ctrl

data_processing:
Sequencing data reads were quality-checked with FastQC. Reads were trimmed with Trimmomatic and aligned to the reference genome and transcriptome (FASTA and GTF files, respectively, Ensembl GRCh37) with STAR. Gene expression was quantified using the R/Bioconductor package Rsubread version 1.22. Differentially expressed genes between conditions were identified using the R/Bioconductor package DESeq2.
Reads were aligned to the reference genome (hg19) using using BWA v. 0.7.5a. Samples were filtered for regions blacklisted by the ENCODE project. Subsequently samples were deduplicated using SAMtools version 1.3.1. Alignment coordinates were converted to BED format using BEDTools v.2.17. Peaks were annotated on gene and transcript level using the "ChIPpeakAnno", "ChIPQC", and "ChIPseeker" packages of R. "DiffBind" package was used for differential binding.
ScRNAseq data from cultured SF transfected with either control or HOTAIR targeting GapmeR (n = 3) were integrated with SF of publicly available datasets and two in-house datasets. R with Seurat package (version 4.0) was used. The standard Seurat protocol was followed and for the final integration we applied harmony within the Seurat workflow. First 30 PC’s were the defined dimensionality of the dataset and a resolution of 0.1 was set for the downstream clustering. Annotation of the different clusters were performed based on the expression or absence of known SF marker genes: CD55, THY1, CXCL12, POSTN, CD34 and MKI67.
Genome_build: hg19 & hg38
Supplementary_files_format_and_content: xlsx file including normalized count and FPKM values for each sample
Supplementary_files_format_and_content: bed files including peak score
Supplementary_files_format_and_content: xlsx file with metadata

source_name: cultured synovial fibroblasts, transfected with CONTROL

extract_protocol:
Total RNA was isolated with the miRNeasy Mini kit (Qiagen) including on-column DNaseI digestion from SF silenced for HOTAIR and control (n = 3 each) 48h after. For measurements of H3K27me3 marks after HOTAIR silencing, SF pellets from OA knees transfected with GapmeR HOTAIR and GapmeR Control (n = 3 each) were prepared using the iDeal ChIP seq kit for Histones (Diagenode) with a shearing of 12 cycles (30′′ON 30′′OFF, Bioruptor Pico). 15’000 unsorted synovial cells (viability 60-88%) per patient were prepared for single cell analysis using the Chromium Single Cell 3’ Reagent kit (v3.1 chemistry; 10x Genomics).
Bulk RNAseq libraries were prepared using the Illumina TruSeq Stranded total RNA protocol; ChIPseq libraries were prepared using the MicroPLEX v2 protocol; scRNAseq libraries were prepared using the Chromium Single Cell 3’ Reagent kit (v3.1 chemistry; 10x Genomics)

treatment_protocol: Synovial fibroblasts were transfected with 50 nM antisense LNA HOTAIR GapmeR (Exiqon, Sequence: 5′-AGGCTTCTAAATCCGT-3′) using Lipofectamine 2000 (Invitrogen). Antisense LNA GapmeR Negative Control A (Cat No 300610) was used as transfection control.

value: cultured synovial fibroblast

value: transfected with Gapmer control

tag: localisation

value: Knee


title: SF_KD_HOTAIR_rep2_bulkRNAseq

description:
RNAseq_data.xlsx
20161216.A-361HOTAIR

source_name: cultured synovial fibroblasts, transfected with HOTAIR

value: transfected with Gapmer Hotair


title: SF_control_rep1_bulkRNAseq

description:
RNAseq_data.xlsx
20161216.A-359ctrl


title: SF_control_rep3_bulkRNAseq

description:
RNAseq_data.xlsx
20161216.A-393ctrl


title: SF_KD_HOTAIR_rep3_bulkRNAseq

description:
RNAseq_data.xlsx
20161216.A-393HOTAIR


title: Liver - IRhepWT_AdLib_ZT0 - Rep3


title: SF_KD_HOTAIR_rep1_bulkRNAseq

description:
RNAseq_data.xlsx
20161216.A-359HOTAIR


title: Liver - IRhepKO_RF_ZT08 - Rep2


title: Liver - IRhepWT_RF_ZT04 - Rep4


title: Liver - IRhepKO_AdLib_ZT20 - Rep3


title: Cal62-2: Anaplastic thyroid cancer cell line-cal-62 FOXK2 2

city: Shanghai

first: Weihua

last: Qiu

address: Ruijin 2 road

institute: Ruijin Hospital, Shanghai Jiao Tong University School of Medicine

data_processing:
Basecalls performed using  Solexa pipeline v1.8
The trimmed reads (trimmed 5’,3’-adaptor bases using cutadapt) were aligned to reference genome using Hisat2 (2.1.0)software
The transcript abundances for each sample was estimated with StringTie（1.3.3）
the FPKM value for gene and transcript level were calculated with R package Ballgown (v2.8.4)
Genome_build: hg19
Supplementary_files_format_and_content: The xlsx format file contains the trackid of gene and the FPKM value.

growth_protocol: Cal-62 was cultured in DMEM with 10% fetal bovine serum (FBS), and antibiotics at 37°C with 5% CO2.

extract_protocol:
RNA quality and quantity was measured by using nanodrop spectrophotometer (ND-1000, Nanodrop Technologies) and RNA Integrity was determined by gel electrophoresis
Libraries were prepared by using KAPA Stranded RNA-Seq Library Prep Kit(Illumina). Briefly,Total RNA of each sample was used to prepare the RNA sequencing library 1)RNA fragment；2)Random primed first strand cDNA synthesis；3)dUTP based second strand cDNA synthesis;4)Adaptor ligation and PCR amplification.

tag: disease state

value: Anaplastic thyroid cancer

tag: genotype/variation


title: Cal62-3: Anaplastic thyroid cancer cell line-cal-62 FOXK2 3


title: Cal62-1: Anaplastic thyroid cancer cell line-cal-62 FOXK2 1


title: Liver - IRhepWT_AdLib_ZT16 - Rep3


title: Liver - IRhepKO_AdLib_ZT12 - Rep1


title: Liver - IRhepKO_RF_ZT0 - Rep3


title: NC-3: Anaplastic thyroid cancer cell line-cal-62 vector 3

value: vector


title: Liver - IRhepKO_RF_ZT04 - Rep5


title: NC-1: Anaplastic thyroid cancer cell line-cal-62 vector 1


title: NC-2: Anaplastic thyroid cancer cell line-cal-62 vector 2


title: Liver - IRhepKO_AdLib_ZT16 - Rep3


title: Cal-62 input

description: FOXK2 is also called ILF-1(https://www.genecards.org/)

data_processing:
base calling were performed using Off-Line Basecaller software (OLB V1.8).
Data were filtered using Solexa CHASTITY quality filter. Individual bases generated from original image files have quality scores which reflect the probability whether a base-call is correct or not. The CHASTITY should be no less than 0.6 in the first 25 bases.After passing Solexa CHASTITY quality filter, the clean reads were aligned to reference genome  using BOWTIE software (V2.1.0).
Aligned reads were used for peak calling of the ChIP regions using MACS V1.4.2. Statistically significant ChIP-enriched regions (peaks) were identified by comparison of IP vs Input or comparison to a Poisson background model, using a p-value threshold of 10-4.
The peaks which located within -2Kb to +2Kb around the corresponding gene TSS in samples were annotated using the newest UCSC RefSeq database.
Genome_build: HG19
Supplementary_files_format_and_content: The signal profile (at 10 bp resolution) with UCSC WIG file format was generated from ChIP-seq data, which can be visualized on UCSC genome browser or IGB browser (Integrated Genome Browser, Java Runtime Environment needed, http://www.bioviz.org/igb/).

source_name: Anaplastic thyroid cancer cell line-cal-62

extract_protocol:
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody.
10 ng of each DNA samples were prepared for Illumina sequencing as the following steps:  1) DNA samples were blunt-ended; 2) A dA base was added to the 3' end of each strand; 3) Illumina's genomic adapters were ligated to the DNA fragments; 4) PCR amplification was performed to enrich ligated fragments; 5) Size selection of ~200-1500bp enriched product using AMPure XP beads. The completed libraries were quantified by Agilent 2100 Bioanalyzer.

tag: chip antibody

value: none (input)


title: Liver - IRhepWT_RF_ZT16 - Rep5


title: Liver - IRhepKO_AdLib_ZT12 - Rep3


title: Cal-62 FOXK2-IP

value: FOXK2 (Abcam, ab5298)


title: Liver - IRhepKO_RF_ZT16 - Rep4

value: IRhepKO


title: sweet1_ABA+glucose_rep4

city: Urbana

first: Xueyi

last: Xue

state: Illinois

address: 1201 W. Gregory Dr.

department: Department of Plant Biology

institute: University of Illinois at Urbana-Champaign

data_processing:
Raw reads were trimmed and filtered by removing adapters sequence and bases with low quality score (Q30 score < 15) using Trimmomatic v0.38
Clean reads were mapped to Arabidopsis thaliana (version 11) primary transcript sequences (https://phytozome.jgi.doe.gov) to calculate the gene expression in transcript per million (TPM) using Kallisto v 0.44.0 (Bray, et.al., Nat Biotechnol, 2016).
Candidates with more than 10 counts per million reads in at least 50% samples, and with parameters |b| ≥ 0.2 and q-value < 0.05 were identified differentially expressed genes (DEGs) using Sleuth program (Pimentel, et.al., Nat Methods, 2017).
Genome_build: Arabidopsis thaliana (version 11) primary transcript sequences
Supplementary_files_format_and_content: Matrix table with gene TPM values for each Sample
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

organism: Arabidopsis thaliana

source_name: whole seed

growth_protocol: After 3-day imbibition at 4 °C, WT and sweet1 seeds were sown on ½ MS medium and grown under constant light, 22 °C

extract_protocol:
Total RNA was extracted by RNeasy PowerPlant Kit (13500-50, Qiagen), DNA was removed via Turbo DNA-free kit (AM1907, Invitrogen).
The libraries were prepared from 1 µg total RNA using KAPA mRNA Hyper Prep kit (KK8581, Roche) with KAPA Dual-indexed Adapter kit (KK8722, Roche).
The libraries were pooled and sequenced by Hiseq 2500 (Illumina) with paired-end reads.

treatment_protocol: Seeds were transferred at 24 HAI to ½ MS liquid medium supplemented with either 60 mM Glc, 5 µM ABA or both for 6 hours. Four biological replicates were collected for each treatment.

tag: strain

value: germinating seed

tag: age

value: 30 hours after imbibition

value: ABA+glucose


title: Liver - IRhepKO_RF_ZT20 - Rep2

value: RF


title: Liver - IRhepWT_AdLib_ZT04 - Rep1

value: IRhepWT

value: AdLib


title: Liver - IRhepWT_RF_ZT0 - Rep3


title: Liver - IRhepKO_AdLib_ZT0 - Rep2


title: Liver - IRhepKO_RF_ZT12 - Rep2


title: Liver - IRhepWT_AdLib_ZT20 - Rep3


title: sweet1_ABA+glucose_rep3


title: sweet1_ABA+glucose_rep2


title: sweet1_ABA+glucose_rep1


title: Liver - IRhepKO_AdLib_ZT08 - Rep3


title: Liver - IRhepWT_AdLib_ZT0 - Rep2


title: Liver-Male-IRLKO_ZT16-Rep2

hyb_protocol: 600 ng of Cy3-labelled cRNA (specific activity >6 pmol Cy3/µg cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 25 µl containing 10x Agilent fragmentation buffer and 25x Agilent blocking agent following the manufacturer's instructions (Agilent Technologies, Santa Clara, CA). On completion of the fragmentation reaction, 25 µl of 2x Agilent hybridization buffer was added to the fragmentation mixture and hybridized to SurePrint G3 Mouse GE v2 icroarray (8X60K, Design 074809  enclosed in Agilent SureHyb-enabled hybridization chambers for 17 hours at 65°C in a rotating Agilent hybridization oven. After hybridization, microarrays were washed sequentially in Wash buffer 1 (Agilent Technologies, 1 min) and Wash buffer 2 (Agilent Technologies, 37°C, 1 min).

data_processing: The scanned images were analyzed with Feature Extraction Software 10.10.1.1 (Agilent Technologies, Santa Clara, CA) using default parameters (protocol GE1_1010_Sep10 and Grid: 074809_D_F_20150624). All subsequent data analyses were done under R (www.r-project.org) using packages of Bioconductor (www.bioconductor.org). Raw data (median of pixels intensity) were imported into R using the read.maimages function from the limma package with the following weight function (assigning a weight of 1 or 0 to each spot): myfunw<-function(x) {okType<-x$ControlType==0; okFoundGreen<-x$gIsFound==1; okPos=x$gIsPosAndSignif==1; okWellAbove<- x$gIsWellAboveBG==1; as.numeric(okType & okFoundGreen & okPos & okWellAbove);} We selected the spots with a minimal weight of 1 for 29 out of 36 microarrays or with a minimal weight of 4 per group from at least one experimental group. At this step, 35450 spots out of 62976 were selected.  The mean signal of the 11 first samples, 12 next and 13 last ones were substracted to individuals signals to correct the batch effect of the 3 serials (characteristics:WashBatch) observed during the microarray washing procedure. Data were then stored in an ExpressionSet object and normalized by the quantile method using the normalize.quantiles function from the preprocessCore R library. Replicated probes on the array (identical ProbeName) were resolved by taking the median normalized signal of each set of replicated probes. The resulting matrix has 32801 rows each corresponding to a unique ProbeName (provided as data Matrix).

growth_protocol: All mice were fed a standard rodent diet (Safe 04 U8220G10R), and housed under controlled temperature (21-23°C) and light (12-h light/12-h dark) conditions : lights were turned on at Zeitgeber time (ZT) 0 and turned off at ZT12.

extract_protocol: Total liver RNA was extracted using TRI Reagent (Molecular Research Center, Inc., Cincinnati, OH, USA)

treatment_protocol: Mice did not receive any treament and were fed ad libitum.

value: IRLKO

tag: gender

value: Male

value: 11 weeks old mice


title: Liver-Male-IRLWT_ZT8-Rep6

value: IRLWT


title: sweet1_ABA_rep4


title: sweet1_ABA_rep3


title: Liver - IRhepKO_AdLib_ZT04 - Rep2


title: Liver - IRhepWT_AdLib_ZT08 - Rep4


title: sweet1_ABA_rep2


title: sweet1_ABA_rep1


title: sweet1_glucose_rep3


title: sweet1_glucose_rep4


title: sweet1_glucose_rep2


title: Liver-Male-IRLWT_ZT12-Rep2


title: Liver - IRhepWT_RF_ZT08 - Rep5


title: Liver-Male-IRLKO_ZT8-Rep6


title: Liver-Male-IRLWT_ZT16-Rep2


title: Liver-Male-IRLKO_ZT12-Rep6


title: Liver-Male-IRLKO_ZT8-Rep1


title: Liver-Male-IRLKO_ZT16-Rep4


title: Liver-Male-IRLWT_ZT8-Rep4


title: Liver-Male-IRLWT_ZT16-Rep4


title: sweet1_glucose_rep1


title: sweet1_control_rep3

value: control


title: sweet1_control_rep2


title: sweet1_control_rep1


title: Liver-Male-IRLKO_ZT8-Rep4


title: ZnSO4 dose level 7 bio rep 8 [Zn_P1_H8_S47]

city: Cincinnati

first: John

middle: Walter

last: Martinson

state: Ohio

address: 26 W. Martin L. King Drive

department: ORD

description:
96 well plate
Zn_P1_H8_S47_L003
Zn.raw.counts.txt
Zn.sansG11H11.filtered.normFinal.txt

data_processing:
Base calling was done by Illumina Real Time Analysis (RTA) v2.7.7 and output of RTA was demultiplexed and converted to FastQ format with Illumina Bcl2fastq v2.19.1.
The 50 base long reads from each sample's RNA-Seq fastq(.gz) file were mapped with STAR (Dobin, et. al) v2.7.1a to indexed FHM genome with 26,150 gene models loaded within the genome (WIOS00000000; BioSample SAMN12875914). STAR "--quantMode GeneCounts" was used to produce raw counts from the mapping; reverse strand count column was used as dictated by sequencing protocol. Genomic gene and transcript coordinates and associated annotations are contained in files WIOS01.1.gbff.gz, WIOS01.2.gbff.gz and WIOS01.3.gbff.gz available at https://www.ncbi.nlm.nih.gov/Traces/wgs/WIOS01?display=contigs. Uniprot accessions associated with gene models are available from the authors.
Samples with <2 million raw counts and/or less than 50% unique mapping rate were removed, and within-chemical features (genes) with mean raw counts <5 across all samples were filtered from respective raw counts matrices.
For each chemical, the raw counts for the remaining features were normalized to counts per million reads (CPM), and after adding a pseudo-count of 1 to prevent taking log of zero counts, log2 transformed.
For each chemical, an MDS plot of the normalized data was generated. Individual samples separated from all remaining samples on either principle component #1 (PC1) or principle component #2 (PC2) by >2x the span of all other samples on the corresponding PC were removed from further analysis. Qualitative assessment was applied and samples with a relatively large Euclidean distance from all other remaining samples on MDS plots were also excluded, along with samples especially distant from corresponding replicates within dose.
Assembly: EPA_FHM_2.0.b
Supplementary files format and content: For each chemical, tab delimited text matrix table with raw gene counts for every gene and every sample.
Supplementary files format and content: For each sample, tab delimited text matrix table with normalized expression values for every gene and every sample that passed all filtering.

organism: Pimephales promelas

source_name: whole body

extract_protocol:
Larvae remained in their 1 mL deep wells, exposure solution was removed and replaced with lysis buffer, a bead was added to each well, and subjects were homogenized in their wells.
Libraries were prepared from 250 ng RNA using the SENSE mRNA-Seq Library Prep Kit V2 (Lexogen, Greenland, NH) according to the supplied protocol.

treatment_protocol: For ten different chemicals, 24h post-hatch individual fathead minnow larvae were statically exposed in 96 deep well plates to controls and a half-log dilution series of treatment concentrations. Exposures were for 24 hours. Subjects from all doses that did not exhibit excessive levels of mortality were further processed.

value: whole body

tag: developmental stage

value: larva

value: 5 dpf/24 hr post hatch

tag: Sex

tag: concentration

tag: time point

value: 24 hr


title: sweet1_control_rep4

tag: tissue

tag: genotype


title: Liver-Male-IRLWT_ZT8-Rep3

tag: feeding


title: Liver-Male-IRLWT_ZT12-Rep5

tag: time


title: Liver-Male-IRLWT_ZT16-Rep5

tag: washbatch


title: ZnSO4 dose level 10 bio rep 8 [Zn_P1_H11_S46]

description:
96 well plate
Zn_P1_H11_S46_L003
Zn.raw.counts.txt
na

tag: treatment


title: ZnSO4 dose level 6 bio rep 8 [Zn_P1_H7_S48]

description:
96 well plate
Zn_P1_H7_S48_L003
Zn.raw.counts.txt
Zn.sansG11H11.filtered.normFinal.txt


title: ZnSO4 dose level 1 bio rep 8 [Zn_P1_H2_S58]

description:
96 well plate
Zn_P1_H2_S58_L003
Zn.raw.counts.txt
Zn.sansG11H11.filtered.normFinal.txt


title: ZnSO4 dose level 8 bio rep 8 [Zn_P1_H9_S50]

description:
96 well plate
Zn_P1_H9_S50_L003
Zn.raw.counts.txt
Zn.sansG11H11.filtered.normFinal.txt


title: ZnSO4 dose level 4 bio rep 8 [Zn_P1_H5_S53]

description:
96 well plate
Zn_P1_H5_S53_L003
Zn.raw.counts.txt
Zn.sansG11H11.filtered.normFinal.txt


title: Liver-Male-IRLKO_ZT8-Rep5


title: ZnSO4 dose level 5 bio rep 8 [Zn_P1_H6_S54]

description:
96 well plate
Zn_P1_H6_S54_L003
Zn.raw.counts.txt
Zn.sansG11H11.filtered.normFinal.txt


title: Liver-Male-IRLKO_ZT16-Rep5


title: Liver-Male-IRLKO_ZT12-Rep2


title: Liver-Male-IRLWT_ZT8-Rep1


title: ZnSO4 dose level 9 bio rep 8 [Zn_P1_H10_S49]

description:
96 well plate
Zn_P1_H10_S49_L003
Zn.raw.counts.txt
Zn.sansG11H11.filtered.normFinal.txt


title: Liver-Male-IRLKO_ZT16-Rep1


title: ZnSO4 dose level 3 bio rep 8 [Zn_P1_H4_S52]

description:
96 well plate
Zn_P1_H4_S52_L003
Zn.raw.counts.txt
Zn.sansG11H11.filtered.normFinal.txt


title: ZnSO4 dose level 2 bio rep 8 [Zn_P1_H3_S51]

description:
96 well plate
Zn_P1_H3_S51_L003
Zn.raw.counts.txt
Zn.sansG11H11.filtered.normFinal.txt


title: Liver-Male-IRLKO_ZT12-Rep5


title: Liver-Male-IRLWT_ZT12-Rep6


title: Liver-Male-IRLWT_ZT16-Rep1


title: Liver-Male-IRLWT_ZT16-Rep3


title: Liver-Male-IRLKO_ZT12-Rep4


title: Liver-Male-IRLWT_ZT12-Rep1


title: Liver-Male-IRLKO_ZT12-Rep1


title: ZnSO4 dose level 8 bio rep 7 [Zn_P1_G9_S62]

description:
96 well plate
Zn_P1_G9_S62_L003
Zn.raw.counts.txt
Zn.sansG11H11.filtered.normFinal.txt


title: Liver-Male-IRLKO_ZT8-Rep3


title: Liver-Male-IRLWT_ZT12-Rep3