title: 10C_M_2755


title: 10C_M_2753

status: Public on Apr 17 2023

type: SRA

city: La Jolla

first: Joseph

middle: R

last: Ecker

state: CA

address: 10010 North Torrey Pines Road

department: Genomic Analysis Laboratory

country: USA

institute: HHMI-Salk-Institute

library_source: genomic

data_processing:
Reads trimed with Cutadapt for adapters and low quality bases (Phred score >= 20)
The resulting files are mapped to in-silico bisulfite converted mm10 reference genome using Bismark.
The raw BAM file will be filtered using samtools to filter reads by MAPQ > 10 and use Picard to remove PCR duplicates
Tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls will be generated with in-house developing package using the filtered BAM files
Assembly: mm10
Supplementary files format and content: tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls. Columns are: 1. Chromosome, 2. Position, 3. Strand, 4. Cytosin Context, 5. methylated base call, 6. total mapped base call, 7. not used, place holder column
Library strategy: snmC-seq2

molecule: genomic DNA

organism: Mus musculus

source_name: C57BL/6J Male P56 Mouse Brain

growth_protocol: All mice are C57BL/6J Male, brain dissected in P56

extract_protocol:
the brain of P56 male C57BL/6J mouse will be removed and cut into 600 microns thick coronal sections using a tissue matrix. Then each region will be microdissected from the coronal tissue sections based on identified landmarks and brain atlas coordinates, as defined in Allen brain atlas CCF3 (Avaliable at: http://atlas.brain-map.org). For each dissection region, the tissue from several littermate mice will be combined together into to separate replicate groups. The number of animals in a replicate depends on the size of the tissue. Nuclei preparation will be stained with the fluorescently labeled anti-NeuN body and nucleic acid stain Hoechst 33342.
Library prepared following protocol discribed in Luo, Chongyuan, Angeline Rivkin, Jingtian Zhou, Justin P. Sandoval, Laurie Kurihara, Jacinta Lucero, Rosa Castanon, et al. 2018. “Robust Single-Cell DNA Methylome Profiling with snmC-seq2.” Nature Communications 9 (1): 3824.

tag: brain region

tag: age

tag: strain

tag: Sex

value: male


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title: 10C_M_1980


title: 10C_M_1979


title: 10C_M_2002


title: 10C_M_1977


title: 10C_M_1983


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title: 10C_M_1682


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title: 10C_M_1665


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title: 10C_M_1662


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title: 10C_M_1683


title: 10C_M_1686


title: 10C_M_1659


title: 10C_M_1656


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title: 10C_M_1658


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title: 10C_M_1650


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title: 10C_M_1648


title: 10C_M_1646


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title: 10C_M_1675


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title: 10C_M_1649


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title: 10C_M_1643


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title: 10C_M_1644


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title: 10C_M_1619


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title: 10C_M_1613


title: 10C_M_1609


title: 10C_M_1616


title: 10C_M_1611


title: 10C_M_1612


title: 10C_M_1595


title: 10C_M_1605


title: 10C_M_1599


title: 10C_M_1607


title: 10C_M_1602


title: 10C_M_1600


title: 10C_M_1598


title: 10C_M_1597


title: 10C_M_1608


title: 10C_M_1593


title: 10C_M_1596


title: 10C_M_1594


title: 10C_M_1621


title: 10C_M_1589


title: 10C_M_1592


title: 10C_M_1622


title: 10C_M_1590


title: 10C_M_1587


title: 10C_M_1586


title: 10C_M_1584


title: 10C_M_1604


title: 10C_M_1603


title: 10C_M_1581


title: 10C_M_1579


title: 10C_M_1583


title: 10C_M_1582


title: 10C_M_1578


title: 10C_M_1577


title: 10C_M_1591


title: 10C_M_1569


title: 10C_M_1574


title: 10C_M_1570


title: 10C_M_1575


title: 10C_M_1571


title: 10C_M_1567


title: 10C_M_1563


title: 10C_M_1564


title: 10C_M_1565


title: 10C_M_1562


title: 10C_M_1558


title: 10C_M_1557


title: 10C_M_1559


title: 10C_M_1561


title: 10C_M_1548


title: 10C_M_1547


title: 10C_M_1551


title: 10C_M_1556


title: 10C_M_1549


title: 10C_M_1580


title: 10C_M_1550


title: 10C_M_1543


title: 10C_M_1545


title: 10C_M_1540


title: 10C_M_1542


title: 10C_M_1546


title: 10C_M_1541


title: 10C_M_1566


title: 10C_M_1539


title: 10C_M_1535


title: 10C_M_1538


title: 10C_M_1536


title: 10C_M_1553


title: 10C_M_1532


title: 10C_M_1534


title: 10C_M_1530


title: 10C_M_1526


title: 10C_M_1527


title: 10C_M_1525


title: 10C_M_1531


title: 10C_M_1528


title: 10C_M_1524


title: 10C_M_1522


title: LocusB1_C3459

city: Berkeley

first: Sudha

last: Rajderkar

address: 1 Cyclotron Rd

institute: Lawrence Berkeley National Laboratory

data_processing:
base-calling using bcl2fastq
Contacts for Hi-C data were stored in the juicer Hi-C format (could be opened with Juicebox.js, Robinson et al, Cell Systems 6(2), 2018).
Assembly: mm10
Supplementary files format and content: Juicer hic format for Hi-C data.

source_name: Adult liver

extract_protocol:
Arima Genomics Protocol
For Hi-C, mouse liver samples were harvested upon euthanasia, flash frozen in liquid nitrogen and pulverized before 1% formaldehyde cross-linking for 15 mins.
For Hi-C, thawed crosslinked tissued was dissociated with genteleMACs and processed downstream using standard protocols; chromtain was digested with Mbol.

tag: tissue

value: Adult liver

value: FVB/Cast

tag: developmental stage

value: Post natal day 60

tag: genotype

value: heterozygous

tag: gender


title: 10C_M_1520


title: LocusB1_C3452

value: wildType

value: female


title: LocusB1_C3451


title: Old Replicate 2 Slide 2

city: South San Francisco

first: Oliver

last: Hahn

address: 1170 Veterans Blvd

institute: Calico Life Sciences, LLC

description:
spatial RNA
10x Genomics

library_source: transcriptomic single cell

data_processing:
Space Ranger (v.3.1) analysis pipelines were utilized to align image and FASTQ files, detect tissue and fiducial frames, count barcodes/UMIs.
Assembly: mm10
Supplementary files format and content: High-resolution images of each tissue (required for alignment); Tab-separated values files and matrix files (for counts); processed space ranger visual mapping data (for spatial anaysis)

molecule: total RNA

source_name: Coronal brain section

extract_protocol:
Frozen brains (n = 2 males per age; aged 6, 18 and 21 months; C57BL/6J strain) were embedded in OCT for cryosectioning at 16 micron thickness (app. Bregma -1.655mm; Allen brain reference atlas coronal section 71). Reactions were carried out with the Visum Spatial Gene Expression (GEX) and Tissue Optimization (TO) Slide & Reagent Kits according to the manufacturer’s protocol with recommended reagents (10X Genomics, 1000193 and 1000184). Sections were placed on designated capture areas of slides for TO and GEX and stored at -80°C until further processing. GEX slides were fixed with methanol and stained with hematoxylin and eosin (HE) for visualization of tissue morphology on a AxioImager Widefield Fluorescence Microscope (Zeiss) at 10-fold magnification.
GEX slides were incubated with permeabilization enzyme for 20 minutes followed by incubation with RT and second strand synthesis. cDNA was then transferred into tubes and amplified for 15 cycles using a Thermal Cycler (BioRad). Library construction steps were performed according to the manufacturer’s protocol and included cDNA fragmentation, end repair and A-tailing, adaptor ligation, and sample indexing and amplification. Quality control of the constructed library was conducted via Bioanalyzer (Agilent).
10X Visium for flash frozen tissue, v3 chemistry

value: Male

value: Coronal brain section

value: 21 months

tag: slide id

tag: capture area


title: Young Replicate 2 Slide 1

description:
spatial RNA
10x Genomics

value: 6 months


title: Old Replicate 1 Slide 1

description:
spatial RNA
10x Genomics


title: Middle Replicate 2 Slide 2

description:
spatial RNA
10x Genomics

value: 18 months


title: Young Replicate 1 Slide 1

description:
spatial RNA
10x Genomics


title: Middle Replicate 1 Slide 1

description:
spatial RNA
10x Genomics


title: Caudate putamen Sample 1 21mo [CP_O_1]

description: 10x Genomics

data_processing:
Raw reads were processed using the CellRanger software (v4.0.0) provided by 10x Genomics and counting reads mapping to introns.  The number of nuclei for each sample was determined using the cellranger count command.
Assembly: mm10
Supplementary files format and content: Tab-separated values files and matrix files

source_name: Caudate putamen

extract_protocol:
Single-nuclei preparation and sequencing was performed as previously described (Hahn et al., 2020) with the following modifications: Nuclei from left hemisphere brain region punches were isolated with EZ Prep lysis buffer (Sigma, NUC-101) on ice. Samples were placed into 2 ml cold EZ lysis buffer in a 2 ml glass dounce tissue grinder (Sigma, D8938) and homogenized by hand 25 times with pestle A followed by 25 times with pestle B while incorporating a 180-degree twist. Tissue homogenate was transferred to a fresh 15 ml tube on ice. The tissue grinder was rinsed with 2 ml fresh lysis buffer and transferred to the tube holding the homogenate for a total volume of 4 ml. Samples were incubated on ice for 5 minutes. Nuclei were centrifuged at 500 x g for 5 minutes at 4°C, supernatant removed and pellet resuspended with 4 ml EZ lysis buffer, and incubated on ice for 5 minutes. Centrifugation at 500 x g for 5 minutes at 4°C was repeated. After removing supernatant, the pellet was resuspended with 4 ml chilled PBS and filtered through a 35-um cell strainer into a 5 ml round bottom FACS tube (Corning, 352235). Following centrifugation at 300 x g for 10 minutes at 4°C with break 3, supernatant was gently poured out leaving behind the nuclei pellet. Pellet was resuspended in 400 ul PBS containing 1% BSA (Thermo Fisher, BP9700100), 0.2 ul Hoechst dye (Thermo Fisher, H3570) , and 2 ul recombinant RNase inhibitor (Takara, 2313B). Isolated nuclei were sorted on a MA900 Multi-Application Cell Sorter (Sony Biotechnology). 25k single nuclei per sample were collected into 1.5 ml DNA lo-bind tubes (Eppendorf, 022431021) containing 1 ml buffer mix with PBS, UltraPure BSA (Thermo Fisher, AM2618), and RNase inhibitor (Takara, 2313B). At this stage, samples were multiplexed during sorting by combining an equal number of nuclei from 1 male and 1 female sample of the same age group. Collected nuclei were centrifuged at 400 x g for 5 minutes at 4°C with break 2. Supernatant was removed leaving 40 ul suspended nuclei. Nuclei were counted using a hemocytometer (Sigma, Z359629-1EA) and assessed for concentration and quality.
Reagents of the Chromium Single Cell 3’ GEM & Gel Bead Kit v3.1 (10X Genomics, 1000121) were thawed and prepared according to the manufacturer’s protocol. Nuclei and master mix solution was adjusted to target 10,000 nuclei per sample and loaded on a standard Chromium Controller (10X Genomics, 1000204) according to manufacturer protocols. We applied 11 PCR cycles to generate cDNA. Library construction was conducted using Chromium Single Cell 3’ Library Construction Kit v3 (10X Genomics, 1000121). All reaction and quality control steps were carried out according to the manufacturer’s protocol and with recommended reagents, consumables, and instruments. We chose 11 PCR cycles for library generation. Quality control of cDNA and libraries was conducted using a Bioanalyzer (Agilent) at the Stanford Protein and Nucleic Acid Facility.
10X Nuc-seq, v3.1 chemistry

value: pooled male and female

value: Caudate putamen

tag: molecule subtype

value: single-nuclei RNA


title: Caudate putamen Sample 2 21mo [CP_O_2]

description: 10x Genomics


title: Caudate putamen Sample 1 3mo [CP_Y_1]

description: 10x Genomics

value: 3 months


title: Hippocampus Sample 2 21mo [HIP_O_2]

description: 10x Genomics

source_name: Hippocampus (anterior)

value: Hippocampus (anterior)


title: Caudate putamen Sample 2 3mo [CP_Y_2]

description: 10x Genomics

value: 3  months


title: Hippocampus Sample 1 21mo [HIP_O_1]

description: 10x Genomics


title: Hippocampus Sample 1 3mo [HIP_Y_1]

description: 10x Genomics


title: Visual Cortex Male 26mo 8ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_8

library_source: transcriptomic

data_processing:
Raw sequence reads were trimmed to remove adaptor contamination and poor-quality reads using Trim Galore! (v0.3.7, parameters: --paired --length 25). Trimmed sequences were aligned using STAR (v2.5.3a). Multi-mapped reads were filtered. Data visualization and analysis was performed using SeqMonk (http://www.bioinformatics.babraham.ac.uk/projects/seqmonk/), custom RStudio (https://www.rstudio.com/) scripts and the following Bioconductor packages: Deseq2 (Love et al., 2014), topGO (Alexa and Rahnenfuhrer, 2010) and org.Mm.eg.db.
Assembly: GRCm38
Supplementary files format and content: tab-delimited text file including raw counts for each sample

source_name: Visual Cortex

extract_protocol:
RNeasy Qiagen RNA isolation from homogenized tissue.
Smart-Seq2 for preparation of cDNA followed by library preparation using Nextera XT. Nextera tagmentation according to the standard protocol for single cell RNA-seq following Smart-Seq2.

value: Visual Cortex

tag: age (months)

tag: mouse id number


title: Hippocampus Sample 2 3mo [HIP_Y_2]

description: 10x Genomics


title: Visual Cortex Female 12mo 7ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_7

value: Female


title: Visual Cortex Male 28mo 59ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_59


title: Visual Cortex Female 15mo 54ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_54


title: Visual Cortex Female 21mo 56ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_56


title: Visual Cortex Female 21mo 52ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_52


title: Visual Cortex Male 28mo 57ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_57


title: Visual Cortex Female 18mo 55ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_55


title: Visual Cortex Male 12mo 6ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_6


title: Visual Cortex Female 18mo 51ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_51


title: Visual Cortex Female 3mo 53ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_53


title: Visual Cortex Male 28mo 58ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_58


title: Visual Cortex Female 3mo 49ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_49


title: Visual Cortex Female 15mo 50ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_50


title: Visual Cortex Female 21mo 48ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_48


title: Visual Cortex Female 18mo 47ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_47


title: Visual Cortex Female 15mo 46ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_46


title: Visual Cortex Female 3mo 45ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_45


title: Visual Cortex Female 21mo 44ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_44


title: Visual Cortex Female 15mo 42ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_42


title: Visual Cortex Female 3mo 41ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_41


title: Visual Cortex Female 12mo 4ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_4


title: Visual Cortex Female 21mo 40ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_40


title: Visual Cortex Female 15mo 38ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_38


title: Visual Cortex Male 18mo 35ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_35


title: Visual Cortex Male 15mo 34ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_34


title: Visual Cortex Male 21mo 36ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_36


title: Visual Cortex Male 21mo 32ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_32


title: Visual Cortex Male 18mo 31ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_31


title: Visual Cortex Male 15mo 30ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_30


title: Visual Cortex Male 3mo 25ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_25


title: Visual Cortex Male 21mo 24ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_24


title: Visual Cortex Male 15mo 26ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_26


title: Visual Cortex Male 18mo 27ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_27


title: Visual Cortex Male 15mo 22ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_22


title: Visual Cortex Male 3mo 21ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_21


title: Visual Cortex Male 21mo 28ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_28


title: Visual Cortex Male 18mo 23ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_23


title: Visual Cortex Female 18mo 43ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_43


title: Visual Cortex Male 21mo 20ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_20


title: Visual Cortex Male 15mo 18ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_18


title: Visual Cortex Male 3mo 17ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_17


title: Visual Cortex Male 12mo 15ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_15


title: Visual Cortex Female 18mo 39ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_39


title: Visual Cortex Male 26mo 14ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_14


title: Visual Cortex Male 18mo 19ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_19


title: Visual Cortex Female 3mo 37ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_37


title: Visual Cortex Female 12mo 13ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_13


title: Visual Cortex Male 26mo 2ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_2


title: Visual Cortex Male 3mo 33ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_33


title: Visual Cortex Male 26mo 11ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_11


title: Visual Cortex Female 12mo 1ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_1


title: Thalamus Male 12mo 9ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_9

source_name: Thalamus

value: Thalamus


title: Thalamus Male 26mo 8ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_8


title: Visual Cortex Male 3mo 29ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_29


title: Visual Cortex Male 12mo 3ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_3


title: Visual Cortex Female 12mo 10ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_10


title: Thalamus Female 12mo 7ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_7


title: Thalamus Male 12mo 6ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_6


title: Thalamus Male 28mo 58ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_58


title: Thalamus Female 15mo 54ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_54


title: Thalamus Female 21mo 56ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_56


title: Thalamus Male 28mo 57ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_57


title: Thalamus Female 18mo 55ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_55


title: Thalamus Male 28mo 59ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_59


title: Thalamus Male 26mo 5ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_5


title: Thalamus Female 3mo 49ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_49


title: Thalamus Female 18mo 51ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_51


title: Thalamus Female 15mo 50ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_50


title: Visual Cortex Male 21mo 16ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_vis_16


title: Thalamus Female 3mo 45ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_45


title: Thalamus Female 18mo 43ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_43


title: Thalamus Female 21mo 44ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_44


title: Thalamus Female 15mo 46ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_46


title: Thalamus Female 15mo 42ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_42


title: Thalamus Female 3mo 41ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_41


title: Thalamus Female 18mo 39ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_39


title: Thalamus Female 21mo 40ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_40


title: Thalamus Female 12mo 4ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_4


title: Thalamus Female 15mo 38ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_38


title: Thalamus Female 18mo 47ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_47


title: Thalamus Male 18mo 35ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_35


title: Thalamus Male 3mo 33ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_33


title: Thalamus Female 21mo 52ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_52


title: Thalamus Male 21mo 32ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_32


title: Thalamus Male 21mo 36ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_36


title: Thalamus Female 3mo 37ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_37


title: Thalamus Male 15mo 30ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_30


title: Thalamus Male 18mo 31ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_31


title: Thalamus Male 3mo 29ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_29


title: Thalamus Male 12mo 3ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_3


title: Thalamus Female 3mo 53ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_53


title: Thalamus Male 21mo 28ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_28


title: Thalamus Male 15mo 26ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_26


title: Thalamus Female 21mo 48ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_48


title: Thalamus Male 21mo 24ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_24


title: Thalamus Male 18mo 27ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_27


title: Thalamus Male 3mo 25ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_25


title: Thalamus Male 18mo 23ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_23


title: Thalamus Male 3mo 21ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_21


title: Thalamus Male 21mo 20ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_20


title: Thalamus Male 26mo 2ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_2


title: Thalamus Male 15mo 22ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_22


title: Thalamus Male 18mo 19ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_19


title: Thalamus Male 21mo 16ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_16


title: Thalamus Male 3mo 17ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_17


title: Thalamus Male 15mo 18ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_18


title: Thalamus Female 12mo 13ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_13


title: Thalamus Male 12mo 15ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_15


title: Thalamus Male 26mo 14ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_14


title: Thalamus Male 15mo 34ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_34


title: Thalamus Male 12mo 12ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_12


title: Thalamus Female 12mo 10ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_10


title: Subventricular zone Male 26mo 8ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_8

source_name: Subventricular zone

value: Subventricular zone


title: Thalamus Female 12mo 1ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_1


title: Subventricular zone Male 12mo 9ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_9


title: Subventricular zone Male 12mo 6ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_6


title: Subventricular zone Female 12mo 7ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_7


title: Subventricular zone Male 28mo 58ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_58


title: Subventricular zone Female 21mo 56ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_56


title: Subventricular zone Female 18mo 55ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_55


title: Subventricular zone Male 28mo 57ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_57


title: Subventricular zone Female 18mo 51ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_51


title: Subventricular zone Female 3mo 53ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_53


title: Subventricular zone Female 15mo 50ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_50


title: Subventricular zone Female 15mo 54ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_54


title: Subventricular zone Female 21mo 52ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_52


title: Subventricular zone Female 18mo 47ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_47


title: Subventricular zone Female 3mo 49ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_49


title: Subventricular zone Male 26mo 5ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_5


title: Subventricular zone Female 15mo 46ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_46


title: Subventricular zone Female 21mo 44ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_44


title: Subventricular zone Female 3mo 41ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_41


title: Subventricular zone Female 18mo 43ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_43


title: Subventricular zone Female 15mo 38ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_38


title: Subventricular zone Female 18mo 39ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_39


title: Subventricular zone Female 15mo 42ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_42


title: Subventricular zone Female 21mo 40ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_40


title: Subventricular zone Female 3mo 45ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_45


title: Thalamus Male 26mo 11ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_th_11


title: Subventricular zone Female 3mo 37ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_37


title: Subventricular zone Male 21mo 36ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_36


title: Subventricular zone Male 15mo 34ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_34


title: Subventricular zone Male 18mo 35ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_35


title: Subventricular zone Male 3mo 33ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_33


title: Subventricular zone Male 21mo 32ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_32


title: Subventricular zone Male 28mo 59ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_59


title: Subventricular zone Male 18mo 31ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_31


title: Subventricular zone Male 12mo 3ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_3


title: Subventricular zone Male 15mo 30ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_30


title: Subventricular zone Male 3mo 29ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_29


title: Subventricular zone Male 21mo 28ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_28


title: Subventricular zone Male 15mo 26ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_26


title: Subventricular zone Male 18mo 27ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_27


title: Subventricular zone Male 3mo 25ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_25


title: Subventricular zone Male 21mo 24ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_24


title: Subventricular zone Male 3mo 21ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_21


title: Subventricular zone Male 15mo 22ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_22


title: Subventricular zone Male 21mo 20ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_20


title: Subventricular zone Male 18mo 23ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_23


title: Subventricular zone Male 21mo 16ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_16


title: Subventricular zone Male 26mo 14ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_14


title: Subventricular zone Male 3mo 17ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_17


title: Subventricular zone Male 12mo 15ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_15


title: Subventricular zone Male 12mo 12ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_12


title: Subventricular zone Male 15mo 18ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_18


title: Subventricular zone Female 12mo 10ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_10


title: Subventricular zone Female 12mo 13ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_13


title: Subventricular zone Female 12mo 1ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_1


title: Pons Female 12mo 7ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_7

source_name: Pons

value: Pons


title: Pons Male 28mo 59ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_59


title: Pons Male 28mo 58ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_58


title: Pons Male 28mo 57ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_57


title: Pons Female 21mo 56ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_56


title: Pons Female 3mo 53ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_53


title: Pons Female 15mo 54ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_54


title: Pons Female 15mo 50ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_50


title: Pons Male 26mo 5ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_5


title: Pons Female 3mo 49ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_49


title: Pons Female 21mo 48ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_48


title: Pons Female 3mo 45ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_45


title: Pons Female 18mo 47ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_47


title: Pons Female 15mo 42ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_42


title: Pons Female 18mo 39ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_39


title: Pons Female 15mo 38ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_38


title: Pons Female 3mo 41ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_41


title: Pons Female 21mo 40ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_40


title: Pons Male 21mo 36ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_36


title: Subventricular zone Male 26mo 11ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_svz_11


title: Pons Female 3mo 37ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_37


title: Pons Male 15mo 34ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_34


title: Pons Male 21mo 32ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_32


title: Pons Male 26mo 8ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_8


title: Pons Male 12mo 3ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_3


title: Pons Male 3mo 29ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_29


title: Pons Male 21mo 28ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_28


title: Pons Male 18mo 31ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_31


title: Pons Female 18mo 55ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_55


title: Pons Female 21mo 52ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_52


title: Pons Male 15mo 26ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_26


title: Pons Female 18mo 51ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_51


title: Pons Male 18mo 23ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_23


title: Pons Male 21mo 24ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_24


title: Pons Male 15mo 22ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_22


title: Pons Female 21mo 44ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_44


title: Pons Male 21mo 20ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_20


title: Pons Female 18mo 43ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_43


title: Pons Male 3mo 21ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_21


title: Pons Male 18mo 19ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_19


title: Pons Male 26mo 2ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_2


title: Pons Male 12mo 15ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_15


title: Pons Male 18mo 35ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_35


title: Pons Male 21mo 16ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_16


title: Pons Male 12mo 12ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_12


title: Pons Male 26mo 11ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_11


title: Pons Male 3mo 17ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_17


title: Pons Female 12mo 1ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_1


title: Pons Male 15mo 18ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_18


title: Choroid Plexus Male 12mo 9ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_9

source_name: Choroid Plexus

value: Choroid Plexus


title: Pons Male 15mo 30ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_30

value: Male


title: Choroid Plexus Male 26mo 8ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_8


title: Pons Female 12mo 10ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_10


title: Choroid Plexus Female 12mo 7ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_7


title: Choroid Plexus Male 28mo 57ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_57


title: Choroid Plexus Male 28mo 59ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_59


title: Choroid Plexus Female 21mo 56ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_56


title: Pons Male 3mo 25ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_pon_25


title: Choroid Plexus Female 18mo 55ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_55


title: Choroid Plexus Female 3mo 53ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_53


title: Choroid Plexus Female 15mo 50ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_50


title: Choroid Plexus Female 18mo 51ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_51


title: Choroid Plexus Male 26mo 5ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_5


title: Choroid Plexus Female 3mo 49ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_49


title: Choroid Plexus Female 21mo 48ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_48


title: Choroid Plexus Female 18mo 47ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_47


title: Choroid Plexus Female 15mo 46ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_46


title: Choroid Plexus Female 3mo 45ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_45


title: Choroid Plexus Female 18mo 43ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_43


title: Choroid Plexus Female 15mo 42ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_42


title: Choroid Plexus Female 21mo 40ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_40


title: Choroid Plexus Female 18mo 39ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_39


title: Choroid Plexus Female 21mo 44ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_44


title: Choroid Plexus Female 15mo 38ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_38


title: Choroid Plexus Female 3mo 37ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_37


title: Choroid Plexus Male 21mo 36ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_36


title: Choroid Plexus Male 15mo 34ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_34


title: Choroid Plexus Male 18mo 35ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_35


title: Choroid Plexus Male 3mo 33ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_33


title: Choroid Plexus Male 21mo 32ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_32


title: Choroid Plexus Male 18mo 31ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_31


title: Choroid Plexus Male 28mo 58ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_58


title: Choroid Plexus Male 15mo 30ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_30


title: Choroid Plexus Female 15mo 54ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_54


title: Choroid Plexus Male 21mo 28ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_28


title: Choroid Plexus Female 21mo 52ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_52


title: Choroid Plexus Male 12mo 3ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_3


title: Choroid Plexus Male 18mo 27ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_27


title: Choroid Plexus Male 3mo 29ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_29


title: Choroid Plexus Male 15mo 26ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_26


title: Choroid Plexus Male 3mo 25ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_25


title: Choroid Plexus Male 21mo 24ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_24


title: Choroid Plexus Male 18mo 23ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_23


title: Choroid Plexus Male 21mo 20ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_20


title: Choroid Plexus Male 15mo 22ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_22


title: Choroid Plexus Female 3mo 41ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_41


title: Choroid Plexus Female 12mo 4ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_4


title: Choroid Plexus Male 18mo 19ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_19


title: Choroid Plexus Male 15mo 18ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_18


title: Choroid Plexus Male 26mo 2ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_2


title: Choroid Plexus Male 21mo 16ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_16


title: Choroid Plexus Female 12mo 13ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_13


title: Choroid Plexus Male 26mo 14ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_14


title: Choroid Plexus Female 12mo 10ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_10


title: Olfactory bulb Female 12mo 7ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_7

source_name: Olfactory bulb

value: Olfactory bulb


title: Choroid Plexus Male 12mo 12ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_12


title: Choroid Plexus Male 26mo 11ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_11


title: Olfactory bulb Male 12mo 9ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_9


title: Olfactory bulb Male 28mo 57ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_57


title: Olfactory bulb Female 21mo 56ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_56


title: Olfactory bulb Male 28mo 58ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_58


title: Olfactory bulb Male 26mo 8ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_8


title: Olfactory bulb Male 12mo 6ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_6


title: Olfactory bulb Male 28mo 59ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_59


title: Olfactory bulb Female 3mo 53ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_53


title: Olfactory bulb Female 15mo 54ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_54


title: Olfactory bulb Female 18mo 55ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_55


title: Olfactory bulb Female 18mo 51ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_51


title: Olfactory bulb Female 21mo 52ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_52


title: Olfactory bulb Female 15mo 50ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_50


title: Choroid Plexus Male 3mo 21ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_21


title: Olfactory bulb Male 26mo 5ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_5


title: Olfactory bulb Female 21mo 44ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_44


title: Olfactory bulb Female 18mo 47ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_47


title: Olfactory bulb Female 15mo 46ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_46


title: Olfactory bulb Female 21mo 48ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_48


title: Choroid Plexus Male 12mo 15ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_15


title: Olfactory bulb Female 3mo 49ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_49


title: Olfactory bulb Female 3mo 45ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_45


title: Choroid Plexus Male 3mo 17ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_plx_17


title: Olfactory bulb Female 15mo 42ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_42


title: Olfactory bulb Female 3mo 41ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_41


title: Olfactory bulb Female 18mo 43ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_43


title: Olfactory bulb Male 18mo 31ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_31


title: Olfactory bulb Male 21mo 36ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_36


title: Olfactory bulb Male 18mo 35ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_35


title: Olfactory bulb Female 15mo 38ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_38


title: Olfactory bulb Female 18mo 39ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_39


title: Olfactory bulb Female 12mo 4ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_4


title: Olfactory bulb Male 15mo 34ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_34


title: Olfactory bulb Male 21mo 28ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_28


title: Olfactory bulb Male 3mo 33ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_33


title: Olfactory bulb Male 3mo 29ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_29


title: Olfactory bulb Male 12mo 3ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_3


title: Olfactory bulb Male 15mo 30ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_30


title: Olfactory bulb Male 18mo 27ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_27


title: Olfactory bulb Male 15mo 26ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_26


title: Olfactory bulb Male 21mo 24ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_24


title: Olfactory bulb Male 3mo 25ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_25


title: Olfactory bulb Female 21mo 40ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_40


title: Olfactory bulb Female 3mo 37ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_37


title: Olfactory bulb Male 18mo 23ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_23


title: Olfactory bulb Male 15mo 22ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_22


title: Olfactory bulb Male 15mo 18ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_18


title: Olfactory bulb Male 26mo 14ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_14


title: Olfactory bulb Male 26mo 2ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_2


title: Olfactory bulb Male 12mo 15ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_15


title: Olfactory bulb Male 18mo 19ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_19


title: Olfactory bulb Male 3mo 17ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_17


title: Olfactory bulb Male 3mo 21ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_21


title: Olfactory bulb Male 21mo 16ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_16


title: Olfactory bulb Male 21mo 20ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_20


title: Olfactory bulb Female 12mo 13ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_13


title: Olfactory bulb Male 12mo 12ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_12


title: Olfactory bulb Female 12mo 10ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_10


title: Olfactory bulb Male 26mo 11ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_11


title: Medulla Female 12mo 7ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_7

source_name: Medulla

value: Medulla


title: Medulla Male 12mo 9ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_9


title: Medulla Male 26mo 8ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_8


title: Olfactory bulb Female 12mo 1ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_olf_1


title: Medulla Female 3mo 53ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_53


title: Medulla Female 21mo 56ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_56


title: Medulla Male 28mo 58ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_58


title: Medulla Male 28mo 59ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_59


title: Medulla Female 15mo 54ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_54


title: Medulla Female 21mo 52ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_52


title: Medulla Male 28mo 57ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_57


title: Medulla Female 18mo 51ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_51


title: Medulla Female 15mo 50ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_50


title: Medulla Male 26mo 5ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_5


title: Medulla Female 3mo 49ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_49


title: Medulla Female 15mo 46ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_46


title: Medulla Female 3mo 45ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_45


title: Medulla Female 21mo 48ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_48


title: Medulla Female 15mo 42ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_42


title: Medulla Female 18mo 47ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_47


title: Medulla Female 18mo 43ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_43


title: Medulla Female 3mo 41ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_41


title: Medulla Female 18mo 39ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_39


title: Medulla Female 21mo 44ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_44


title: Medulla Female 15mo 38ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_38


title: Medulla Male 18mo 35ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_35


title: Medulla Female 3mo 37ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_37


title: Medulla Male 21mo 36ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_36


title: Medulla Male 21mo 32ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_32


title: Medulla Male 12mo 6ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_6


title: Medulla Female 18mo 55ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_55


title: Medulla Male 3mo 33ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_33


title: Medulla Male 18mo 31ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_31


title: Medulla Male 21mo 28ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_28


title: Medulla Male 12mo 3ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_3


title: Medulla Male 18mo 27ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_27


title: Medulla Male 15mo 26ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_26


title: Medulla Male 21mo 24ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_24


title: Medulla Male 15mo 30ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_30


title: Medulla Male 18mo 23ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_23


title: Medulla Female 21mo 40ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_40


title: Medulla Male 15mo 22ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_22


title: Medulla Male 3mo 21ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_21


title: Medulla Male 15mo 34ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_34


title: Medulla Male 21mo 20ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_20


title: Medulla Male 3mo 17ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_17


title: Medulla Male 18mo 19ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_19


title: Medulla Male 21mo 16ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_16


title: Medulla Male 15mo 18ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_18


title: Medulla Male 12mo 15ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_15


title: Medulla Female 12mo 13ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_13


title: Medulla Male 12mo 12ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_12


title: Medulla Male 26mo 14ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_14


title: Hypothalamus Male 12mo 9ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_9

source_name: Hypothalamus

value: Hypothalamus


title: Medulla Female 12mo 1ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_1


title: Hypothalamus Male 26mo 8ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_8


title: Medulla Male 3mo 25ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_25


title: Hypothalamus Female 12mo 7ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_7


title: Medulla Female 12mo 10ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_10


title: Medulla Male 3mo 29ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_29


title: Medulla Male 26mo 11ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_11


title: Hypothalamus Female 21mo 56ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_56


title: Hypothalamus Male 28mo 57ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_57


title: Hypothalamus Female 3mo 53ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_53


title: Hypothalamus Male 28mo 58ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_58


title: Hypothalamus Female 15mo 50ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_50


title: Hypothalamus Female 18mo 51ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_51


title: Hypothalamus Male 12mo 6ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_6


title: Medulla Male 26mo 2ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_med_2


title: Hypothalamus Female 3mo 49ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_49


title: Hypothalamus Female 18mo 47ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_47


title: Hypothalamus Female 21mo 48ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_48


title: Hypothalamus Female 15mo 46ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_46


title: Hypothalamus Female 3mo 45ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_45


title: Hypothalamus Female 3mo 41ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_41


title: Hypothalamus Female 18mo 43ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_43


title: Hypothalamus Female 15mo 38ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_38


title: Hypothalamus Female 18mo 55ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_55


title: Hypothalamus Female 21mo 40ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_40


title: Hypothalamus Female 18mo 39ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_39


title: Hypothalamus Female 21mo 52ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_52


title: Hypothalamus Female 3mo 37ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_37


title: Hypothalamus Female 12mo 4ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_4


title: Hypothalamus Male 21mo 36ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_36


title: Hypothalamus Female 21mo 44ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_44


title: Hypothalamus Male 15mo 34ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_34


title: Hypothalamus Male 18mo 35ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_35


title: Hypothalamus Female 15mo 54ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_54


title: Hypothalamus Male 21mo 32ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_32


title: Hypothalamus Male 3mo 33ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_33


title: Hypothalamus Male 18mo 31ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_31


title: Hypothalamus Male 21mo 28ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_28


title: Hypothalamus Male 15mo 30ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_30


title: Hypothalamus Male 12mo 3ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_3


title: Hypothalamus Male 18mo 27ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_27


title: Hypothalamus Female 15mo 42ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_42


title: Hypothalamus Male 3mo 25ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_25


title: Hypothalamus Male 21mo 24ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_24


title: Hypothalamus Male 15mo 26ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_26


title: Hypothalamus Male 18mo 23ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_23


title: Hypothalamus Male 15mo 22ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_22


title: Hypothalamus Male 21mo 20ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_20


title: Hypothalamus Male 26mo 2ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_2


title: Hypothalamus Male 3mo 21ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_21


title: Hypothalamus Male 18mo 19ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_19


title: Hypothalamus Male 3mo 17ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_17


title: Hypothalamus Male 12mo 12ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_12


title: Hypothalamus Male 26mo 14ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_14


title: Hypothalamus Male 26mo 11ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_11


title: Hypothalamus Male 21mo 16ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_16


title: Hippocampus (anterior) Female 12mo 7ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_7


title: Hippocampus (anterior) Male 12mo 9ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_9


title: Hippocampus (anterior) Male 12mo 6ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_6


title: Hippocampus (anterior) Male 26mo 8ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_8


title: Hippocampus (anterior) Male 28mo 59ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_59


title: Hypothalamus Male 12mo 15ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_15


title: Hypothalamus Female 12mo 10ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_10


title: Hippocampus (anterior) Female 21mo 56ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_56


title: Hippocampus (anterior) Male 28mo 58ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_58


title: Hippocampus (anterior) Female 18mo 55ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_55


title: Hypothalamus Female 12mo 1ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_1


title: Hippocampus (anterior) Male 28mo 57ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_57


title: Hippocampus (anterior) Female 15mo 54ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_54


title: Hippocampus (anterior) Female 21mo 52ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_52


title: Hippocampus (anterior) Female 3mo 53ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_53


title: Hippocampus (anterior) Male 26mo 5ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_5


title: Hippocampus (anterior) Female 18mo 51ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_51


title: Hippocampus (anterior) Female 21mo 48ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_48


title: Hippocampus (anterior) Female 3mo 49ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_49


title: Hippocampus (anterior) Female 15mo 46ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_46


title: Hippocampus (anterior) Female 18mo 47ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_47


title: Hippocampus (anterior) Female 3mo 45ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_45


title: Hypothalamus Male 15mo 18ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hy_18


title: Hippocampus (anterior) Female 21mo 44ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_44


title: Hippocampus (anterior) Female 18mo 43ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_43


title: Hippocampus (anterior) Female 15mo 50ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_50


title: Hippocampus (anterior) Female 3mo 41ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_41


title: Hippocampus (anterior) Female 12mo 4ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_4


title: Hippocampus (anterior) Female 18mo 39ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_39


title: Hippocampus (anterior) Female 21mo 40ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_40


title: Hippocampus (anterior) Male 18mo 35ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_35


title: Hippocampus (anterior) Female 3mo 37ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_37


title: Hippocampus (anterior) Male 3mo 33ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_33


title: Hippocampus (anterior) Male 21mo 32ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_32


title: Hippocampus (anterior) Male 18mo 31ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_31


title: Hippocampus (anterior) Female 15mo 38ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_38


title: Hippocampus (anterior) Male 21mo 36ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_36


title: Hippocampus (anterior) Male 15mo 34ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_34


title: Hippocampus (anterior) Male 21mo 28ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_28


title: Hippocampus (anterior) Male 15mo 26ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_26


title: Hippocampus (anterior) Male 18mo 27ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_27


title: Hippocampus (anterior) Male 3mo 25ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_25


title: Hippocampus (anterior) Male 15mo 30ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_30


title: Hippocampus (anterior) Male 3mo 29ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_29


title: Hippocampus (anterior) Male 18mo 23ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_23


title: Hippocampus (anterior) Male 15mo 22ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_22


title: Hippocampus (anterior) Male 3mo 21ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_21


title: Hippocampus (anterior) Male 21mo 24ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_24


title: Hippocampus (anterior) Male 21mo 20ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_20


title: Hippocampus (anterior) Male 3mo 17ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_17


title: Hippocampus (anterior) Male 15mo 18ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_18


title: Hippocampus (anterior) Male 26mo 2ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_2


title: Hippocampus (anterior) Female 12mo 13ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_13


title: Hippocampus (anterior) Male 26mo 14ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_14


title: Hippocampus (anterior) Male 12mo 12ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_12


title: Hippocampus (anterior) Male 26mo 11ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_11


title: Hippocampus (anterior) Female 12mo 10ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_10


title: Hippocampus (anterior) Female 12mo 1ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_1


title: Hippocampus (posterior) Male 12mo 9ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_9

source_name: Hippocampus (posterior)

value: Hippocampus (posterior)


title: Hippocampus (posterior) Female 12mo 7ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_7


title: Hippocampus (posterior) Male 28mo 59ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_59


title: Hippocampus (posterior) Male 28mo 58ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_58


title: Hippocampus (posterior) Female 21mo 56ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_56


title: Hippocampus (posterior) Female 18mo 55ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_55


title: Hippocampus (posterior) Male 28mo 57ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_57


title: Hippocampus (posterior) Female 3mo 53ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_53


title: Hippocampus (posterior) Female 21mo 52ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_52


title: Hippocampus (posterior) Male 26mo 5ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_5


title: Hippocampus (posterior) Female 15mo 50ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_50


title: Hippocampus (anterior) Male 18mo 19ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_19


title: Hippocampus (anterior) Male 12mo 15ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_15


title: Hippocampus (anterior) Male 21mo 16ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi_16


title: Hippocampus (posterior) Female 18mo 43ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_43


title: Hippocampus (posterior) Female 3mo 45ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_45


title: Hippocampus (posterior) Female 15mo 46ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_46


title: Hippocampus (posterior) Female 21mo 44ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_44


title: Hippocampus (posterior) Female 15mo 42ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_42


title: Hippocampus (posterior) Female 3mo 41ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_41


title: Hippocampus (posterior) Female 21mo 40ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_40


title: Hippocampus (posterior) Female 12mo 4ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_4


title: Hippocampus (posterior) Female 18mo 39ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_39


title: Hippocampus (posterior) Male 26mo 8ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_8


title: Hippocampus (posterior) Female 15mo 38ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_38


title: Hippocampus (posterior) Male 12mo 6ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_6


title: Hippocampus (posterior) Female 3mo 37ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_37


title: Hippocampus (posterior) Male 21mo 36ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_36


title: Hippocampus (posterior) Female 15mo 54ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_54


title: Hippocampus (posterior) Male 15mo 34ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_34


title: Hippocampus (posterior) Male 18mo 35ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_35


title: Hippocampus (posterior) Female 18mo 51ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_51


title: Hippocampus (posterior) Male 12mo 3ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_3


title: Hippocampus (posterior) Male 21mo 32ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_32


title: Hippocampus (posterior) Male 3mo 33ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_33


title: Hippocampus (posterior) Female 18mo 47ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_47


title: Hippocampus (posterior) Male 15mo 30ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_30


title: Hippocampus (posterior) Male 18mo 27ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_27


title: Hippocampus (posterior) Female 3mo 49ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_49


title: Hippocampus (posterior) Male 21mo 28ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_28


title: Hippocampus (posterior) Male 3mo 29ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_29


title: Hippocampus (posterior) Male 15mo 26ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_26


title: Hippocampus (posterior) Male 3mo 25ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_25


title: Hippocampus (posterior) Male 21mo 24ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_24


title: Hippocampus (posterior) Male 15mo 22ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_22


title: Hippocampus (posterior) Male 18mo 23ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_23


title: Hippocampus (posterior) Male 3mo 21ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_21


title: Hippocampus (posterior) Male 26mo 2ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_2


title: Hippocampus (posterior) Male 18mo 19ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_19


title: Hippocampus (posterior) Male 15mo 18ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_18


title: Hippocampus (posterior) Male 21mo 20ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_20


title: Hippocampus (posterior) Male 3mo 17ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_17


title: Hippocampus (posterior) Male 21mo 16ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_16


title: Hippocampus (posterior) Male 12mo 12ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_12


title: Hippocampus (posterior) Female 12mo 13ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_13


title: Hippocampus (posterior) Male 26mo 11ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_11


title: Hippocampus (posterior) Male 18mo 31ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_31


title: Hippocampus (posterior) Male 26mo 14ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_14


title: Hippocampus (posterior) Female 12mo 10ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_10


title: Entorhinal cortex Male 26mo 8ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_8

source_name: Entorhinal cortex

value: Entorhinal cortex


title: Entorhinal cortex Male 12mo 9ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_9


title: Entorhinal cortex Male 28mo 58ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_58


title: Entorhinal cortex Male 28mo 57ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_57


title: Entorhinal cortex Male 28mo 59ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_59


title: Entorhinal cortex Female 21mo 56ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_56


title: Entorhinal cortex Female 18mo 55ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_55


title: Entorhinal cortex Female 3mo 53ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_53


title: Entorhinal cortex Female 21mo 52ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_52


title: Entorhinal cortex Female 15mo 54ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_54


title: Entorhinal cortex Female 18mo 51ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_51


title: Entorhinal cortex Female 21mo 48ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_48


title: Entorhinal cortex Female 3mo 49ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_49


title: Entorhinal cortex Female 18mo 47ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_47


title: Hippocampus (posterior) Male 12mo 15ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_15


title: Entorhinal cortex Female 15mo 46ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_46


title: Entorhinal cortex Female 3mo 45ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_45


title: Entorhinal cortex Female 15mo 38ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_38


title: Entorhinal cortex Female 15mo 42ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_42


title: Entorhinal cortex Female 3mo 41ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_41


title: Entorhinal cortex Female 21mo 44ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_44


title: Entorhinal cortex Female 21mo 40ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_40


title: Hippocampus (posterior) Female 12mo 1ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_hi2_1


title: Entorhinal cortex Male 21mo 36ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_36


title: Entorhinal cortex Female 12mo 7ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_7


title: Entorhinal cortex Female 18mo 43ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_43


title: Entorhinal cortex Female 18mo 39ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_39


title: Entorhinal cortex Female 3mo 37ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_37


title: Entorhinal cortex Male 15mo 30ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_30


title: Entorhinal cortex Male 26mo 5ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_5


title: Entorhinal cortex Male 18mo 35ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_35


title: Entorhinal cortex Male 18mo 23ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_23


title: Entorhinal cortex Male 3mo 21ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_21


title: Entorhinal cortex Male 15mo 26ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_26


title: Entorhinal cortex Female 15mo 50ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_50


title: Entorhinal cortex Male 3mo 29ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_29


title: ST41_biol rep 3

city: GIF SUR YVETTE

first: Nicolas

last: Mirouze

address: Avenue de la Terrasse

country: France

institute: Institute for the Integrative Biology of the Cell

data_processing:
bcl2fastq2-2.18.12
Sequence reads were trimmed for adaptor sequence using Cutadapt 1.15
Trimmed sequence reads were mapped to Staphylococcus aureus subsp. Aureus N315 using bwa 0.6.2-r126
Read count were performed using FeaturesCount from subread-1.5.2 package (parameters :  -s 2 (Perform reversely-stranded read counting), -t gene)
Differential analysis using DESeq2 1.28.1
Assembly: Staphylococcus aureus subsp. Aureus N315, GenBank : BA000018.3
Supplementary files format and content: tab-delimited csv files include count for each sample

organism: Staphylococcus aureus

growth_protocol: Cultures of S. aureus were grown in CS2 medium, at 37°C and 180 rpm until the OD600 reached 2

extract_protocol:
To quench cellular metabolism / transcription and to stabilize RNAs, cells were harvested by centrifugation at 10,000 g for 1 min at 4°C and the pellets immediately frozen in liquid nitrogen before storage at −80°C.
For extraction of RNA, cells were lysed using Lysing Matrix B and a FastPrep instrument (both MP Biomedicals), and RNA were isolated using the RNeasy Mini Kit (Qiagen).
RNA libraries for RNA-seq were prepared using TruSeq Total RNA Stranded Library Prep Kit following manufacturer's protocols.

tag: cell line

value: N315ex w/oPhi deltacomK2


title: Entorhinal cortex Male 21mo 24ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_24


title: Entorhinal cortex Male 21mo 32ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_32


title: Entorhinal cortex Male 15mo 22ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_22


title: Entorhinal cortex Male 21mo 28ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_28


title: Entorhinal cortex Male 21mo 20ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_20


title: ST41_biol rep 2


title: ST40_biol rep 3

value: N315ex w/oPhi deltacomK1


title: Entorhinal cortex Male 15mo 18ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_18


title: Entorhinal cortex Male 18mo 19ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_19


title: ST61_biol rep 2

value: N315ex w/oPhi deltasigH


title: Entorhinal cortex Male 21mo 16ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_16


title: ST41_biol rep 1


title: Entorhinal cortex Male 3mo 17ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_17


title: Entorhinal cortex Male 26mo 14ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_14


title: Entorhinal cortex Male 12mo 15ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_15


title: ST61_biol rep 3


title: Entorhinal cortex Male 12mo 12ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_12


title: ST61_biol rep 1


title: ST29_biol rep 2

value: N315ex w/oPhi cured of SCCmec and the Phi N315 prophage


title: Entorhinal cortex Female 12mo 13ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_13


title: Entorhinal cortex Female 12mo 10ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_10


title: Entorhinal cortex Male 3mo 25ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_25


title: ST29_biol rep 1


title: SiglecFhi/CD101+ eosinophils (1)

city: Tel Aviv

first: Guy

last: Shapira

address: Chaim Levanon 30

country: Israel

institute: Tel Aviv University

data_processing:
Library quality control: FASTQC version 0.11.5
Quality and adapter trimming: trim_galore (uses cutadapt version 1.10)
Mapping: Tophat2 version 2.1.0 (uses Bowtie2 version 2.2.6)
Gene counting: HTseq-count version 0.6.1
Normalization and differential expression analysis: DESeq2 R package version 1.28.0

source_name: eosinophils

extract_protocol: The CEL-Seq library was ran on an Illumina NextiSeq550 instrument


title: ST29_biol rep 3


title: Siglec-Fint/CD101- eosinophils (2)


title: ST40_biol rep 1


title: Entorhinal cortex Female 12mo 1ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_ent_1


title: Caudate putamen Male 12mo 6ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_cp_6

value: Caudate putamen


title: Caudate putamen Male 12mo 9ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_cp_9


title: ST40_biol rep 2


title: Caudate putamen Male 26mo 8ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_cp_8


title: Caudate putamen Female 12mo 7ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_cp_7


title: Siglec-Fint/CD101- eosinophils (1)


title: resident eosinophils (6)


title: SiglecFhi/CD101+ eosinophils (2)


title: resident eosinophils (5)


title: Caudate putamen Male 28mo 58ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_cp_58


title: Caudate putamen Male 28mo 57ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_cp_57


title: resident eosinophils (4)


title: Caudate putamen Female 21mo 56ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_cp_56


title: Caudate putamen Male 28mo 59ID

description:
Unstranded mRNA-seq
sample name:
BulkSeq_cp_59