title: 12A_M_935


title: 12A_M_2743

status: Public on Apr 23 2023

type: SRA

city: La Jolla

first: Joseph

middle: R

last: Ecker

state: CA

address: 10010 North Torrey Pines Road

department: Genomic Analysis Laboratory

country: USA

institute: HHMI-Salk-Institute

library_source: genomic

data_processing:
Reads trimed with Cutadapt for adapters and low quality bases (Phred score >= 20)
The resulting files are mapped to in-silico bisulfite converted mm10 reference genome using Bismark.
The raw BAM file will be filtered using samtools to filter reads by MAPQ > 10 and use Picard to remove PCR duplicates
Tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls will be generated with in-house developing package using the filtered BAM files
Assembly: mm10
Supplementary files format and content: tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls. Columns are: 1. Chromosome, 2. Position, 3. Strand, 4. Cytosin Context, 5. methylated base call, 6. total mapped base call, 7. not used, place holder column
Library strategy: snmC-seq2

molecule: genomic DNA

organism: Mus musculus

source_name: C57BL/6J Male P56 Mouse Brain

growth_protocol: All mice are C57BL/6J Male, brain dissected in P56

extract_protocol:
the brain of P56 male C57BL/6J mouse will be removed and cut into 600 microns thick coronal sections using a tissue matrix. Then each region will be microdissected from the coronal tissue sections based on identified landmarks and brain atlas coordinates, as defined in Allen brain atlas CCF3 (Avaliable at: http://atlas.brain-map.org). For each dissection region, the tissue from several littermate mice will be combined together into to separate replicate groups. The number of animals in a replicate depends on the size of the tissue. Nuclei preparation will be stained with the fluorescently labeled anti-NeuN body and nucleic acid stain Hoechst 33342.
Library prepared following protocol discribed in Luo, Chongyuan, Angeline Rivkin, Jingtian Zhou, Justin P. Sandoval, Laurie Kurihara, Jacinta Lucero, Rosa Castanon, et al. 2018. “Robust Single-Cell DNA Methylome Profiling with snmC-seq2.” Nature Communications 9 (1): 3824.

tag: brain region

tag: age

tag: strain


title: 12A_M_933


title: 12A_M_934


title: 12A_M_2741


title: 12A_M_2742


title: 12A_M_2740


title: 12A_M_932


title: 12A_M_942


title: 12A_M_2737


title: 12A_M_2738


title: 12A_M_2825


title: 12A_M_931


title: 12A_M_2736


title: 12A_M_930


title: 12A_M_929


title: 12A_M_928


title: 12A_M_2735


title: 12A_M_927


title: 12A_M_2734


title: 12A_M_924


title: 12A_M_922


title: 12A_M_2733


title: 12A_M_926


title: 12A_M_2732


title: 12A_M_923


title: 12A_M_2731


title: 12A_M_920


title: 12A_M_921


title: 12A_M_92


title: 12A_M_918


title: 12A_M_2739


title: 12A_M_2727


title: 12A_M_917


title: 12A_M_2728


title: 12A_M_93


title: 12A_M_2724


title: 12A_M_2726


title: 12A_M_916


title: 12A_M_912


title: 12A_M_2725


title: 12A_M_2720


title: 12A_M_913


title: 12A_M_911


title: 12A_M_2721


title: 12A_M_91


title: 12A_M_910


title: 12A_M_909


title: 12A_M_2717


title: 12A_M_2716


title: 12A_M_2718


title: 12A_M_906


title: 12A_M_2730


title: 12A_M_2715


title: 12A_M_2729


title: 12A_M_905


title: 12A_M_901


title: 12A_M_2712


title: 12A_M_904


title: 12A_M_903


title: 12A_M_2713


title: 12A_M_2714


title: 12A_M_915


title: 12A_M_2710


title: 12A_M_900


title: 12A_M_2711


title: 12A_M_2723


title: 12A_M_9


title: 12A_M_2707


title: 12A_M_896


title: 12A_M_908


title: 12A_M_2706


title: 12A_M_894


title: 12A_M_897


title: 12A_M_2705


title: 12A_M_898


title: 12A_M_2709


title: 12A_M_2719


title: 12A_M_2708


title: 12A_M_2703


title: 12A_M_892


title: 12A_M_891


title: 12A_M_2702


title: 12A_M_895


title: 12A_M_890


title: 12A_M_2701


title: 12A_M_2700


title: 12A_M_2698


title: 12A_M_89


title: 12A_M_2699


title: 12A_M_889


title: 12A_M_886


title: 12A_M_884


title: 12A_M_2697


title: 12A_M_2696


title: 12A_M_2695


title: 12A_M_882


title: 12A_M_881


title: 12A_M_2694


title: 12A_M_2704


title: 12A_M_2693


title: 12A_M_880


title: 12A_M_879


title: 12A_M_2691


title: 12A_M_878


title: 12A_M_2688


title: 12A_M_876


title: 12A_M_2690


title: 12A_M_877


title: 12A_M_2692


title: 12A_M_875


title: 12A_M_2687


title: 12A_M_2684


title: 12A_M_873


title: 12A_M_874


title: 12A_M_2686


title: 12A_M_871


title: 12A_M_2685


title: 12A_M_872


title: 12A_M_885


title: 12A_M_87


title: 12A_M_2683


title: 12A_M_870


title: 12A_M_883


title: 12A_M_2682


title: 12A_M_869


title: 12A_M_868


title: 12A_M_2681


title: 12A_M_867


title: 12A_M_2680


title: 12A_M_2679


title: 12A_M_866


title: 12A_M_865


title: 12A_M_2677


title: 12A_M_2678


title: 12A_M_2674


title: 12A_M_864


title: 12A_M_863


title: 12A_M_2675


title: 12A_M_2676


title: 12A_M_862


title: 12A_M_861


title: 12A_M_859


title: 12A_M_2673


title: 12A_M_2671


title: 12A_M_2670


title: 12A_M_86


title: 12A_M_860


title: 12A_M_2672


title: 12A_M_2669


title: 12A_M_855


title: 12A_M_2668


title: 12A_M_2667


title: 12A_M_854


title: 12A_M_853


title: 12A_M_2665


title: 12A_M_851


title: 12A_M_2664


title: 12A_M_2663


title: 12A_M_850


title: 12A_M_85


title: 12A_M_848


title: 12A_M_849


title: 12A_M_2661


title: 12A_M_2662


title: 12A_M_847


title: 12A_M_2660


title: 12A_M_2689


title: 12A_M_2659


title: 12A_M_2657


title: 12A_M_845


title: 12A_M_2656


title: 12A_M_858


title: 12A_M_2658


title: 12A_M_857


title: 12A_M_842


title: 12A_M_841


title: 12A_M_840


title: 12A_M_2653


title: 12A_M_84


title: 12A_M_2655


title: 12A_M_2654


title: 12A_M_2652


title: 12A_M_2651


title: 12A_M_837


title: 12A_M_836


title: 12A_M_2650


title: 12A_M_835


title: 12A_M_2648


title: 12A_M_832


title: 12A_M_2647


title: 12A_M_2666


title: 12A_M_831


title: 12A_M_833


title: 12A_M_846


title: 12A_M_2646


title: 12A_M_2645


title: 12A_M_2644


title: 12A_M_83


title: 12A_M_2642


title: 12A_M_2643


title: 12A_M_829


title: 12A_M_838


title: 12A_M_2641


title: 12A_M_830


title: 12A_M_2634


title: 12A_M_822


title: 12A_M_825


title: 12A_M_2637


title: 12A_M_2633


title: 12A_M_826


title: 12A_M_2636


title: 12A_M_2639


title: 12A_M_2638


title: 12A_M_828


title: 12A_M_834


title: 12A_M_2635


title: 12A_M_823


title: 12A_M_2630


title: 12A_M_2632


title: 12A_M_818


title: 12A_M_820


title: 12A_M_82


title: 12A_M_2631


title: 12A_M_819


title: 12A_M_821


title: 12A_M_824


title: 12A_M_817


title: 12A_M_815


title: 12A_M_2620


title: 12A_M_807


title: 12A_M_809


title: 12A_M_808


title: 12A_M_2616


title: 12A_M_81


title: 12A_M_2626


title: 12A_M_2629


title: 12A_M_814


title: 12A_M_2619


title: 12A_M_2622


title: 12A_M_2624


title: 12A_M_2625


title: 12A_M_2627


title: 12A_M_2628


title: 12A_M_2614


title: 12A_M_2623


title: 12A_M_813


title: 12A_M_811


title: 12A_M_2615


title: 12A_M_810


title: 12A_M_2621


title: 12A_M_805


title: 12A_M_812


title: 12A_M_2613


title: 12A_M_2617


title: 12A_M_806


title: 12A_M_2618


title: 12A_M_801


title: 12A_M_804


title: 12A_M_2612


title: 12A_M_802


title: 12A_M_2608


title: 12A_M_2611


title: 12A_M_2610


title: 12A_M_2609


title: 12A_M_2604


title: 12A_M_2605


title: 12A_M_2606


title: 12A_M_798


title: 12A_M_80


title: 12A_M_2607


title: 12A_M_8


title: 12A_M_2600


title: 12A_M_797


title: 12A_M_800


title: 12A_M_793


title: 12A_M_799


title: 12A_M_2599


title: 12A_M_2598


title: 12A_M_792


title: 12A_M_2597


title: 12A_M_2601


title: 12A_M_795


title: 12A_M_2602


title: 12A_M_796


title: 12A_M_2596


title: 12A_M_791


title: 12A_M_790


title: 12A_M_2595


title: 12A_M_789


title: 12A_M_79


title: 12A_M_2590


title: 12A_M_2593


title: 12A_M_782


title: 12A_M_784


title: 12A_M_783


title: 12A_M_2589


title: 12A_M_2592


title: 12A_M_781


title: 12A_M_2591


title: 12A_M_2587


title: 12A_M_2588


title: 12A_M_2586


title: 12A_M_780


title: 12A_M_2603


title: 12A_M_794


title: 12A_M_78


title: 12A_M_2585


title: 12A_M_779


title: 12A_M_2594


title: 12A_M_2584


title: 12A_M_788


title: 12A_M_2583


title: 12A_M_778


title: 12A_M_777


title: 12A_M_776


title: 12A_M_785


title: 12A_M_2582


title: 12A_M_774


title: 12A_M_2581


title: 12A_M_775


title: 12A_M_2578


title: 12A_M_2580


title: 12A_M_773


title: 12A_M_772


title: 12A_M_2576


title: 12A_M_771


title: 12A_M_2577


title: 12A_M_2575


title: 12A_M_769


title: 12A_M_770


title: 12A_M_768


title: 12A_M_2573


title: 12A_M_2572


title: 12A_M_767


title: 12A_M_2571


title: 12A_M_766


title: 12A_M_765


title: 12A_M_2570


title: 12A_M_2569


title: 12A_M_763


title: 12A_M_764


title: 12A_M_2568


title: 12A_M_761


title: 12A_M_2567


title: 12A_M_2566


title: 12A_M_2574


title: 12A_M_76


title: 12A_M_2564


title: 12A_M_760


title: 12A_M_2563


title: 12A_M_759


title: 12A_M_2559


title: 12A_M_2561


title: 12A_M_2560


title: 12A_M_757


title: 12A_M_758


title: 12A_M_2558


title: 12A_M_755


title: 12A_M_2556


title: 12A_M_2557


title: 12A_M_754


title: 12A_M_762


title: 12A_M_751


title: 12A_M_2553


title: 12A_M_2554


title: 12A_M_2555


title: 12A_M_753


title: 12A_M_752


title: 12A_M_75


title: 12A_M_2565


title: 12A_M_2562


title: 12A_M_2552


title: 12A_M_749


title: 12A_M_2551


title: 12A_M_2550


title: 12A_M_756


title: 12A_M_748


title: 12A_M_747


title: 12A_M_2549


title: 12A_M_2547


title: 12A_M_2548


title: 12A_M_745


title: 12A_M_2546


title: 12A_M_2545


title: 12A_M_2544


title: 12A_M_743


title: 12A_M_742


title: 12A_M_2543


title: 12A_M_750


title: 12A_M_739


title: 12A_M_2539


title: 12A_M_2540


title: 12A_M_74


title: 12A_M_740


title: 12A_M_2542


title: 12A_M_2538


title: 12A_M_738


title: 12A_M_2541


title: 12A_M_736


title: 12A_M_746


title: 12A_M_737


title: 12A_M_2537


title: 12A_M_734


title: 12A_M_2536


title: 12A_M_735


title: 12A_M_2535


title: 12A_M_2534


title: 12A_M_732


title: 12A_M_731


title: 12A_M_733


title: 12A_M_2529


title: 12A_M_2532


title: 12A_M_2530


title: 12A_M_2531


title: 12A_M_2528


title: 12A_M_73


title: 12A_M_728


title: 12A_M_741


title: 12A_M_723


title: 12A_M_727


title: 12A_M_2526


title: 12A_M_726


title: 12A_M_2524


title: 12A_M_2525


title: 12A_M_2527


title: 12A_M_722


title: 12A_M_725


title: 12A_M_721


title: 12A_M_720


title: 12A_M_2523


title: 12A_M_2521


title: 12A_M_2520


title: 12A_M_719


title: 12A_M_72


title: 12A_M_744


title: 12A_M_2518


title: 12A_M_718


title: 12A_M_730


title: 12A_M_717


title: 12A_M_2517


title: 12A_M_716


title: 12A_M_2516


title: 12A_M_2515


title: 12A_M_715


title: 12A_M_2513


title: 12A_M_2514


title: 12A_M_711


title: 12A_M_713


title: 12A_M_2512


title: 12A_M_712


title: 12A_M_2519


title: 12A_M_2511


title: 12A_M_2510


title: 12A_M_2509


title: 12A_M_71


title: 12A_M_710


title: 12A_M_708


title: 12A_M_2508


title: 12A_M_2505


title: 12A_M_705


title: 12A_M_706


title: 12A_M_704


title: 12A_M_2507


title: 12A_M_709


title: 12A_M_2506


title: 12A_M_2503


title: 12A_M_2504


title: 12A_M_2502


title: 12A_M_2498


title: 12A_M_697


title: 12A_M_7


title: 12A_M_699


title: 12A_M_714


title: 12A_M_694


title: 12A_M_2501


title: 12A_M_695


title: 12A_M_700


title: 12A_M_707


title: 12A_M_2500


title: 12A_M_2497


title: 12A_M_70


title: 12A_M_2496


title: 12A_M_691


title: 12A_M_692


title: 12A_M_2494


title: 12A_M_693


title: 12A_M_2493


title: 12A_M_2495


title: 12A_M_690


title: 12A_M_2492


title: 12A_M_2490


title: 12A_M_2499


title: 12A_M_688


title: 12A_M_689


title: 12A_M_2489


title: 12A_M_2488


title: 12A_M_2486


title: 12A_M_686


title: 12A_M_2487


title: 12A_M_685


title: 12A_M_684


title: 12A_M_682


title: 12A_M_683


title: 12A_M_2483


title: 12A_M_2484


title: 12A_M_681


title: 12A_M_2482


title: 12A_M_680


title: 12A_M_2491


title: 12A_M_2479


title: 12A_M_2481


title: 12A_M_679


title: 12A_M_678


title: 12A_M_68


title: 12A_M_2480


title: 12A_M_677


title: 12A_M_687


title: 12A_M_675


title: 12A_M_2476


title: 12A_M_674


title: 12A_M_676


title: 12A_M_69


title: 12A_M_2485


title: 12A_M_673


title: 12A_M_672


title: 12A_M_2472


title: 12A_M_2473


title: 12A_M_2474


title: 12A_M_2475


title: 12A_M_670


title: 12A_M_671


title: 12A_M_2471


title: 12A_M_67


title: 12A_M_2470


title: 12A_M_2469


title: 12A_M_667


title: 12A_M_2477


title: 12A_M_2466


title: 12A_M_2467


title: 12A_M_668


title: 12A_M_2478


title: 12A_M_2468


title: 12A_M_664


title: 12A_M_2463


title: 12A_M_2465


title: 12A_M_663


title: 12A_M_2462


title: 12A_M_666


title: 12A_M_2464


title: 12A_M_661


title: 12A_M_660


title: 12A_M_658


title: 12A_M_2461


title: 12A_M_657


title: 12A_M_669


title: 12A_M_659


title: 12A_M_66


title: 12A_M_2458


title: 12A_M_2460


title: 12A_M_2459


title: 12A_M_656


title: 12A_M_655


title: 12A_M_2455


title: 12A_M_2456


title: 12A_M_665


title: 12A_M_652


title: 12A_M_2453


title: 12A_M_2454


title: 12A_M_651


title: 12A_M_2451


title: 12A_M_653


title: 12A_M_2450


title: 12A_M_2452


title: 12A_M_65


title: 12A_M_650


title: 12A_M_662


title: 12A_M_2449


title: 12A_M_649


title: 12A_M_648


title: 12A_M_2447


title: 12A_M_2448


title: 12A_M_2457


title: 12A_M_646


title: 12A_M_645


title: 12A_M_647


title: 12A_M_644


title: 12A_M_2444


title: 12A_M_2443


title: 12A_M_640


title: 12A_M_654


title: 12A_M_2442


title: 12A_M_639


title: 12A_M_64


title: 12A_M_2440


title: 12A_M_2441


title: 12A_M_636


title: 12A_M_638


title: 12A_M_2439


title: 12A_M_635


title: 12A_M_2438


title: 12A_M_633


title: 12A_M_2436


title: 12A_M_634


title: 12A_M_2435


title: 12A_M_631


title: 12A_M_2434


title: 12A_M_2446


title: 12A_M_2433


title: 12A_M_629


title: 12A_M_2432


title: 12A_M_630


title: 12A_M_2445


title: 12A_M_2431


title: 12A_M_2430


title: 12A_M_626


title: 12A_M_641


title: 12A_M_625


title: 12A_M_2429


title: 12A_M_2428


title: 12A_M_624


title: 12A_M_623


title: 12A_M_622


title: 12A_M_2425


title: 12A_M_621


title: 12A_M_2426


title: 12A_M_2437


title: 12A_M_2424


title: 12A_M_620


title: 12A_M_2423


title: 12A_M_62


title: 12A_M_632


title: 12A_M_2422


title: 12A_M_628


title: 12A_M_2427


title: 12A_M_2413


title: 12A_M_2417


title: 12A_M_617


title: 12A_M_2419


title: 12A_M_613


title: 12A_M_2411


title: 12A_M_61


title: 12A_M_2418


title: 12A_M_2415


title: 12A_M_616


title: 12A_M_2414


title: 12A_M_618


title: 12A_M_614


title: 12A_M_610


title: 12A_M_2420


title: 12A_M_2416


title: 12A_M_612


title: 12A_M_611


title: 12A_M_615


title: 12A_M_2410


title: 12A_M_608


title: 12A_M_619


title: 12A_M_2412


title: 12A_M_2409


title: 12A_M_607


title: 12A_M_2408


title: 12A_M_2407


title: 12A_M_2421


title: 12A_M_606


title: 12A_M_2406


title: 12A_M_605


title: 12A_M_2405


title: 12A_M_604


title: 12A_M_599


title: 12A_M_2402


title: 12A_M_2401


title: 12A_M_609


title: 12A_M_60


title: 12A_M_2404


title: 12A_M_2403


title: 12A_M_594


title: 12A_M_6


title: 12A_M_593


title: 12A_M_598


title: 12A_M_597


title: 12A_M_2400


title: 12A_M_596


title: 12A_M_2395


title: 12A_M_2396


title: 12A_M_2393


title: 12A_M_592


title: 12A_M_2399


title: 12A_M_2394


title: 12A_M_2392


title: 12A_M_591


title: 12A_M_2391


title: 12A_M_603


title: 12A_M_595


title: 12A_M_2398


title: 12A_M_2390


title: 12A_M_2389


title: 12A_M_589


title: 12A_M_2386


title: 12A_M_586


title: 12A_M_585


title: 12A_M_2388


title: 12A_M_588


title: 12A_M_2387


title: 12A_M_584


title: 12A_M_583


title: 12A_M_2384


title: 12A_M_2385


title: 12A_M_2383


title: 12A_M_582


title: 12A_M_580


title: 12A_M_578


title: 12A_M_58


title: 12A_M_2381


title: 12A_M_2380


title: 12A_M_579


title: 12A_M_2379


title: 12A_M_577


title: 12A_M_2378


title: 12A_M_576


title: 12A_M_590


title: 12A_M_2377


title: 12A_M_575


title: 12A_M_2376


title: 12A_M_59


title: 12A_M_573


title: 12A_M_2375


title: 12A_M_570


title: 12A_M_572


title: 12A_M_571


title: 12A_M_2373


title: 12A_M_2374


title: 12A_M_2382


title: 12A_M_2371


title: 12A_M_2369


title: 12A_M_2370


title: 12A_M_2372


title: 12A_M_565


title: 12A_M_563


title: 12A_M_568


title: 12A_M_566


title: 12A_M_2365


title: 12A_M_2368


title: 12A_M_562


title: 12A_M_56


title: 12A_M_561


title: 12A_M_564


title: 12A_M_2366


title: 12A_M_2361


title: 12A_M_2364


title: 12A_M_2363


title: 12A_M_560


title: 12A_M_559


title: 12A_M_2360


title: 12A_M_2362


title: 12A_M_557


title: 12A_M_554


title: 12A_M_2356


title: 12A_M_553


title: 12A_M_552


title: 12A_M_555


title: 12A_M_2355


title: 12A_M_2359


title: 12A_M_567


title: 12A_M_2354


title: 12A_M_2367


title: 12A_M_57


title: 12A_M_556


title: 12A_M_2358


title: 12A_M_2357


title: 12A_M_2352


title: 12A_M_551


title: 12A_M_2351


title: 12A_M_550


title: 12A_M_2353


title: 12A_M_2350


title: 12A_M_549


title: 12A_M_55


title: 12A_M_2349


title: 12A_M_545


title: 12A_M_544


title: 12A_M_558


title: 12A_M_2348


title: 12A_M_542


title: 12A_M_2345


title: 12A_M_2346


title: 12A_M_2347


title: 12A_M_540


title: 12A_M_2344


title: 12A_M_539


title: 12A_M_2342


title: 12A_M_538


title: 12A_M_54


title: 12A_M_536


title: 12A_M_537


title: 12A_M_2343


title: 12A_M_2340


title: 12A_M_535


title: 12A_M_2341


title: 12A_M_2339


title: 12A_M_2338


title: 12A_M_534


title: 12A_M_543


title: 12A_M_2336


title: 12A_M_2337


title: 12A_M_546


title: 12A_M_2334


title: 12A_M_533


title: 12A_M_532


title: 12A_M_530


title: 12A_M_2330


title: 12A_M_527


title: 12A_M_2329


title: 12A_M_2333


title: 12A_M_523


title: 12A_M_53


title: 12A_M_522


title: 12A_M_2326


title: 12A_M_2325


title: 12A_M_531


title: 12A_M_2332


title: 12A_M_2331


title: 12A_M_2335


title: 12A_M_525


title: 12A_M_2323


title: 12A_M_524


title: 12A_M_2321


title: 12A_M_518


title: 12A_M_529


title: 12A_M_521


title: 12A_M_2324


title: 12A_M_517


title: 12A_M_52


title: 12A_M_2320


title: 12A_M_2322


title: 12A_M_516


title: 12A_M_519


title: 12A_M_520


title: 12A_M_528


title: 12A_M_513


title: 12A_M_2327


title: 12A_M_512


title: 12A_M_51


title: 12A_M_2328


title: 12A_M_2319


title: 12A_M_2317


title: 12A_M_2313


title: 12A_M_2318


title: 12A_M_509


title: 12A_M_2312


title: 12A_M_514


title: 12A_M_508


title: 12A_M_511


title: 12A_M_2315


title: 12A_M_506


title: 12A_M_507


title: 12A_M_2310


title: 12A_M_2309


title: 12A_M_505


title: 12A_M_2308


title: 12A_M_504


title: 12A_M_503


title: 12A_M_2307


title: 12A_M_2306


title: 12A_M_502


title: 12A_M_2316


title: 12A_M_2314


title: 12A_M_500


title: 12A_M_2303


title: 12A_M_50


title: 12A_M_2305


title: 12A_M_2304


title: 12A_M_501


title: 12A_M_2302


title: 12A_M_2301


title: 12A_M_499


title: 12A_M_2300


title: 12A_M_2311


title: 12A_M_2299


title: 12A_M_498


title: 12A_M_5


title: 12A_M_496


title: 12A_M_2295


title: 12A_M_2297


title: 12A_M_494


title: 12A_M_495


title: 12A_M_2296


title: 12A_M_493


title: 12A_M_2293


title: 12A_M_2294


title: 12A_M_49


title: 12A_M_489


title: 12A_M_2298


title: 12A_M_497


title: 12A_M_2289


title: 12A_M_488


title: 12A_M_2291


title: 12A_M_487


title: 12A_M_2290


title: 12A_M_482


title: 12A_M_486


title: 12A_M_483


title: 12A_M_2287


title: 12A_M_484


title: 12A_M_485


title: 12A_M_2286


title: 12A_M_2285


title: 12A_M_2292


title: 12A_M_48


title: 12A_M_480


title: 12A_M_481


title: 12A_M_2281


title: 12A_M_2284


title: 12A_M_2288


title: 12A_M_2283


title: 12A_M_2282


title: 12A_M_491


title: 12A_M_2274


title: 12A_M_471


title: 12A_M_473


title: 12A_M_2276


title: 12A_M_2279


title: 12A_M_470


title: 12A_M_474


title: 12A_M_469


title: 12A_M_2278


title: 12A_M_477


title: 12A_M_478


title: 12A_M_479


title: 12A_M_2280


title: 12A_M_2277


title: 12A_M_476


title: 12A_M_2269


title: 12A_M_2268


title: 12A_M_2270


title: 12A_M_2267


title: 12A_M_472


title: 12A_M_466


title: 12A_M_2266


title: 12A_M_2273


title: 12A_M_467


title: 12A_M_47


title: 12A_M_2272


title: 12A_M_2275


title: 12A_M_2271


title: 12A_M_2265


title: 12A_M_468


title: 12A_M_464


title: 12A_M_465


title: 12A_M_2264


title: 12A_M_463


title: 12A_M_462


title: 12A_M_451


title: 12A_M_454


title: 12A_M_2263


title: 12A_M_455


title: 12A_M_456


title: 12A_M_460


title: 12A_M_2262


title: 12A_M_2261


title: 12A_M_2258


title: 12A_M_46


title: 12A_M_2259


title: 12A_M_457


title: 12A_M_452


title: 12A_M_2255


title: 12A_M_453


title: 12A_M_2253


title: 12A_M_2257


title: 12A_M_449


title: 12A_M_45


title: 12A_M_2252


title: 12A_M_447


title: 12A_M_450


title: 12A_M_458


title: 12A_M_2256


title: 12A_M_2250


title: 12A_M_2254


title: 12A_M_446


title: 12A_M_461


title: 12A_M_2260


title: 12A_M_444


title: 12A_M_2251


title: 12A_M_2249


title: 12A_M_2243


title: 12A_M_443


title: 12A_M_2248


title: 12A_M_2242


title: 12A_M_44


title: 12A_M_439


title: 12A_M_2247


title: 12A_M_438


title: 12A_M_2246


title: 12A_M_437


title: 12A_M_436


title: 12A_M_2237


title: 12A_M_2236


title: 12A_M_2245


title: 12A_M_2244


title: 12A_M_441


title: 12A_M_440


title: 12A_M_445


title: 12A_M_2232


title: 12A_M_2240


title: 12A_M_2241


title: 12A_M_2239


title: 12A_M_2238


title: 12A_M_435


title: 12A_M_2234


title: 12A_M_2235


title: 12A_M_434


title: 12A_M_442


title: 12A_M_433


title: 12A_M_2233


title: 12A_M_431


title: 12A_M_430


title: 12A_M_426


title: 12A_M_425


title: 12A_M_2230


title: 12A_M_2229


title: 12A_M_429


title: 12A_M_43


title: 12A_M_2228


title: 12A_M_2231


title: 12A_M_2226


title: 12A_M_424


title: 12A_M_427


title: 12A_M_2227


title: 12A_M_2225


title: 12A_M_2223


title: 12A_M_42


title: 12A_M_423


title: 12A_M_2222


title: 12A_M_415


title: 12A_M_2218


title: 12A_M_2220


title: 12A_M_417


title: 12A_M_419


title: 12A_M_2221


title: 12A_M_416


title: 12A_M_418


title: 12A_M_414


title: 12A_M_2219


title: 12A_M_2217


title: 12A_M_2224


title: 12A_M_2216


title: 12A_M_422


title: 12A_M_411


title: 12A_M_412


title: 12A_M_413


title: 12A_M_2215


title: 12A_M_2214


title: 12A_M_2212


title: 12A_M_2211


title: 12A_M_409


title: 12A_M_2208


title: 12A_M_407


title: 12A_M_2209


title: 12A_M_405


title: 12A_M_406


title: 12A_M_404


title: 12A_M_2206


title: 12A_M_2207


title: 12A_M_2205


title: 12A_M_402


title: 12A_M_401


title: 12A_M_41


title: 12A_M_2204


title: 12A_M_40


title: 12A_M_2210


title: 12A_M_2213


title: 12A_M_2203


title: 12A_M_2202


title: 12A_M_2201


title: 12A_M_2199


title: 12A_M_397


title: 12A_M_2200


title: 12A_M_394


title: 12A_M_398


title: 12A_M_395


title: 12A_M_2198


title: 12A_M_393


title: 12A_M_392


title: 12A_M_2197


title: 12A_M_391


title: 12A_M_2195


title: 12A_M_2196


title: 12A_M_390


title: 12A_M_399


title: 12A_M_403


title: 12A_M_2194


title: 12A_M_2191


title: 12A_M_2193


title: 12A_M_2192


title: 12A_M_39


title: 12A_M_389


title: 12A_M_388


title: 12A_M_380


title: 12A_M_2186


title: 12A_M_386


title: 12A_M_385


title: 12A_M_2189


title: 12A_M_396


title: 12A_M_384


title: 12A_M_382


title: 12A_M_383


title: 12A_M_2190


title: 12A_M_38


title: 12A_M_2184


title: 12A_M_2183


title: 12A_M_375


title: 12A_M_379


title: 12A_M_374


title: 12A_M_377


title: 12A_M_2182


title: 12A_M_2181


title: 12A_M_2180


title: 12A_M_376


title: 12A_M_371


title: 12A_M_2179


title: 12A_M_372


title: 12A_M_2178


title: 12A_M_2187


title: 12A_M_2185


title: 12A_M_370


title: 12A_M_2177


title: 12A_M_2176


title: 12A_M_368


title: 12A_M_367


title: 12A_M_37


title: 12A_M_366


title: 12A_M_365


title: 12A_M_2175


title: 12A_M_2174


title: 12A_M_2173


title: 12A_M_2171


title: 12A_M_369


title: 12A_M_361


title: 12A_M_2169


title: 12A_M_2170


title: 12A_M_363


title: 12A_M_2168


title: 12A_M_360


title: 12A_M_36


title: 12A_M_2167


title: 12A_M_2166


title: 12A_M_2165


title: 12A_M_358


title: 12A_M_357


title: 12A_M_2163


title: 12A_M_2172


title: 12A_M_2162


title: 12A_M_356


title: 12A_M_355


title: 12A_M_2161


title: 12A_M_2160


title: 12A_M_354


title: 12A_M_2156


title: 12A_M_353


title: 12A_M_2157


title: 12A_M_351


title: 12A_M_2159


title: 12A_M_350


title: 12A_M_2155


title: 12A_M_352


title: 12A_M_35


title: 12A_M_2158


title: 12A_M_348


title: 12A_M_349


title: 12A_M_359


title: 12A_M_2152


title: 12A_M_347


title: 12A_M_2153


title: 12A_M_2164


title: 12A_M_346


title: 12A_M_2151


title: 12A_M_345


title: 12A_M_2150


title: 12A_M_343


title: 12A_M_2149


title: 12A_M_2148


title: 12A_M_342


title: 12A_M_341


title: 12A_M_2147


title: 12A_M_2154


title: 12A_M_34


title: 12A_M_2146


title: 12A_M_339


title: 12A_M_2144


title: 12A_M_338


title: 12A_M_2145


title: 12A_M_337


title: 12A_M_2141


title: 12A_M_2140


title: 12A_M_2139


title: 12A_M_336


title: 12A_M_334


title: 12A_M_333


title: 12A_M_2137


title: 12A_M_331


title: 12A_M_2136


title: 12A_M_33


title: 12A_M_2138


title: 12A_M_335


title: 12A_M_330


title: 12A_M_2135


title: 12A_M_2133


title: 12A_M_340


title: 12A_M_329


title: 12A_M_2131


title: 12A_M_2132


title: 12A_M_327


title: 12A_M_328


title: 12A_M_2143


title: 12A_M_2130


title: 12A_M_2127


title: 12A_M_326


title: 12A_M_325


title: 12A_M_2128


title: 12A_M_2129


title: 12A_M_324


title: 12A_M_2125


title: 12A_M_322


title: 12A_M_2124


title: 12A_M_320


title: 12A_M_319


title: 12A_M_2123


title: 12A_M_32


title: 12A_M_318


title: 12A_M_2120


title: 12A_M_2122


title: 12A_M_315


title: 12A_M_2119


title: 12A_M_314


title: 12A_M_313


title: 12A_M_2118


title: 12A_M_2117


title: 12A_M_312


title: 12A_M_2116


title: 12A_M_323


title: 12A_M_311


title: 12A_M_310


title: 12A_M_2126


title: 12A_M_2115


title: 12A_M_2113


title: 12A_M_2114


title: 12A_M_309


title: 12A_M_308


title: 12A_M_2109


title: 12A_M_31


title: 12A_M_316


title: 12A_M_2107


title: 12A_M_307


title: 12A_M_306


title: 12A_M_2108


title: 12A_M_304


title: 12A_M_2106


title: 12A_M_2103


title: 12A_M_302


title: 12A_M_2105


title: 12A_M_2104


title: 12A_M_2102


title: 12A_M_301


title: 12A_M_300


title: 12A_M_2121


title: 12A_M_299


title: 12A_M_2100


title: 12A_M_30


title: 12A_M_3


title: 12A_M_2111


title: 12A_M_2101


title: 12A_M_298


title: 12A_M_296


title: 12A_M_2098


title: 12A_M_2099


title: 12A_M_303


title: 12A_M_2097


title: 12A_M_294


title: 12A_M_2110


title: 12A_M_2112


title: 12A_M_305


title: 12A_M_295


title: 12A_M_2095


title: 12A_M_2096


title: 12A_M_293


title: 12A_M_2094


title: 12A_M_2092


title: 12A_M_291


title: 12A_M_2093


title: 12A_M_2091


title: 12A_M_2088


title: 12A_M_289


title: 12A_M_290


title: 12A_M_287


title: 12A_M_297


title: 12A_M_2087


title: 12A_M_2089


title: 12A_M_286


title: 12A_M_2090


title: 12A_M_2086


title: 12A_M_288


title: 12A_M_2085


title: 12A_M_2084


title: 12A_M_283


title: 12A_M_284


title: 12A_M_2083


title: 12A_M_2082


title: 12A_M_282


title: 12A_M_281


title: 12A_M_280


title: 12A_M_28


title: 12A_M_292


title: 12A_M_29


title: 12A_M_285


title: 12A_M_2079


title: 12A_M_2078


title: 12A_M_279


title: 12A_M_278


title: 12A_M_2076


title: 12A_M_275


title: 12A_M_274


title: 12A_M_2077


title: 12A_M_276


title: 12A_M_2073


title: 12A_M_2074


title: 12A_M_273


title: 12A_M_2072


title: 12A_M_2071


title: 12A_M_2075


title: 12A_M_271


title: 12A_M_2070


title: 12A_M_2081


title: 12A_M_2069


title: 12A_M_268


title: 12A_M_2080


title: 12A_M_270


title: 12A_M_269


title: 12A_M_2068


title: 12A_M_2067


title: 12A_M_267


title: 12A_M_266


title: 12A_M_2066


title: 12A_M_2065


title: 12A_M_264


title: 12A_M_2064


title: 12A_M_263


title: 12A_M_261


title: 12A_M_2063


title: 12A_M_262


title: 12A_M_2062


title: 12A_M_259


title: 12A_M_258


title: 12A_M_2059


title: 12A_M_2060


title: 12A_M_256


title: 12A_M_257


title: 12A_M_272


title: 12A_M_2058


title: 12A_M_255


title: 12A_M_2057


title: 12A_M_254


title: 12A_M_2056


title: 12A_M_252


title: 12A_M_253


title: 12A_M_2054


title: 12A_M_251


title: 12A_M_2055


title: 12A_M_2053


title: 12A_M_2052


title: 12A_M_250


title: 12A_M_2051


title: 12A_M_25


title: 12A_M_2050


title: 12A_M_2049


title: 12A_M_2061


title: 12A_M_248


title: 12A_M_247


title: 12A_M_2048


title: 12A_M_2047


title: 12A_M_245


title: 12A_M_2046


title: 12A_M_2045


title: 12A_M_244


title: 12A_M_2044


title: 12A_M_240


title: 12A_M_2042


title: 12A_M_2041


title: 12A_M_241


title: 12A_M_239


title: 12A_M_238


title: 12A_M_2040


title: 12A_M_237


title: 12A_M_2039


title: 12A_M_236


title: 12A_M_2037


title: 12A_M_249


title: 12A_M_235


title: 12A_M_2035


title: 12A_M_234


title: 12A_M_246


title: 12A_M_2033


title: 12A_M_232


title: 12A_M_2034


title: 12A_M_2031


title: 12A_M_23


title: 12A_M_2032


title: 12A_M_233


title: 12A_M_2030


title: 12A_M_2043


title: 12A_M_243


title: 12A_M_231


title: 12A_M_229


title: 12A_M_228


title: 12A_M_227


title: 12A_M_2029


title: 12A_M_2038


title: 12A_M_2028


title: 12A_M_226


title: 12A_M_2027


title: 12A_M_2026


title: 12A_M_223


title: 12A_M_222


title: 12A_M_2025


title: 12A_M_2024


title: 12A_M_2036


title: 12A_M_221


title: 12A_M_230


title: 12A_M_2021


title: 12A_M_22


title: 12A_M_2022


title: 12A_M_217


title: 12A_M_220


title: 12A_M_216


title: 12A_M_2020


title: 12A_M_2016


title: 12A_M_214


title: 12A_M_2019


title: 12A_M_2017


title: 12A_M_2018


title: 12A_M_2014


title: 12A_M_2012


title: 12A_M_215


title: 12A_M_212


title: 12A_M_2015


title: 12A_M_224


title: 12A_M_213


title: 12A_M_211


title: 12A_M_2013


title: 12A_M_210


title: 12A_M_2023


title: 12A_M_209


title: 12A_M_206


title: 12A_M_2008


title: 12A_M_2007


title: 12A_M_207


title: 12A_M_208


title: 12A_M_2009


title: 12A_M_2010


title: 12A_M_205


title: 12A_M_2005


title: 12A_M_2004


title: 12A_M_202


title: 12A_M_201


title: 12A_M_2006


title: 12A_M_203


title: 12A_M_2011


title: 12A_M_204


title: 12A_M_2001


title: 12A_M_199


title: 12A_M_2000


title: 12A_M_2003


title: 12A_M_197


title: 12A_M_200


title: 12A_M_20


title: 12A_M_2002


title: 12A_M_2


title: 12A_M_196


title: 12A_M_194


title: 12A_M_195


title: 12A_M_193


title: 12A_M_1996


title: 12A_M_1995


title: 12A_M_1997


title: 12A_M_1998


title: 12A_M_1994


title: 12A_M_1993


title: 12A_M_19


title: 12A_M_1992


title: 12A_M_1990


title: 12A_M_191


title: 12A_M_190


title: 12A_M_1991


title: 12A_M_187


title: 12A_M_1999


title: 12A_M_1989


title: 12A_M_186


title: 12A_M_1988


title: 12A_M_1985


title: 12A_M_181


title: 12A_M_1986


title: 12A_M_1987


title: 12A_M_183


title: 12A_M_182


title: 12A_M_192


title: 12A_M_184


title: 12A_M_1983


title: 12A_M_179


title: 12A_M_176


title: 12A_M_1984


title: 12A_M_1981


title: 12A_M_177


title: 12A_M_189


title: 12A_M_174


title: 12A_M_173


title: 12A_M_1978


title: 12A_M_175


title: 12A_M_1979


title: 12A_M_1976


title: 12A_M_1977


title: 12A_M_172


title: 12A_M_170


title: 12A_M_180


title: 12A_M_1975


title: 12A_M_17


title: 12A_M_1974


title: 12A_M_169


title: 12A_M_165


title: 12A_M_1972


title: 12A_M_167


title: 12A_M_1971


title: 12A_M_168


title: 12A_M_1973


title: 12A_M_1970


title: 12A_M_163


title: 12A_M_1968


title: 12A_M_1969


title: 12A_M_1982


title: 12A_M_162


title: 12A_M_1980


title: 12A_M_1967


title: 12A_M_1965


title: 12A_M_160


title: 12A_M_16


title: 12A_M_1964


title: 12A_M_161


title: 12A_M_159


title: 12A_M_1966


title: 12A_M_1962


title: 12A_M_158


title: 12A_M_1963


title: 12A_M_156


title: 12A_M_1961


title: 12A_M_1960


title: 12A_M_154


title: 12A_M_1959


title: 12A_M_1530


title: 12A_M_153


title: 12A_M_1958


title: 12A_M_1955


title: 12A_M_1527


title: 12A_M_1956


title: 12A_M_1952


title: 12A_M_1524


title: 12A_M_164


title: 12A_M_1954


title: 12A_M_1522


title: 12A_M_1951


title: 12A_M_1949


title: 12A_M_1523


title: 12A_M_1521


title: 12A_M_1520


title: 12A_M_152


title: 12A_M_1948


title: 12A_M_1519


title: 12A_M_1946


title: 12A_M_1947


title: 12A_M_1518


title: 12A_M_155


title: 12A_M_1944


title: 12A_M_1516


title: 12A_M_1943


title: 12A_M_1957


title: 12A_M_1529


title: 12A_M_1942


title: 12A_M_1525


title: 12A_M_1513


title: 12A_M_1940


title: 12A_M_1941


title: 12A_M_1512


title: 12A_M_1950


title: 12A_M_1935


title: 12A_M_1937


title: 12A_M_1510


title: 12A_M_1509


title: 12A_M_1511


title: 12A_M_1939


title: 12A_M_1507


title: 12A_M_1936


title: 12A_M_1505


title: 12A_M_1506


title: 12A_M_1938


title: 12A_M_1932


title: 12A_M_1933


title: 12A_M_1504


title: 12A_M_1945


title: 12A_M_1517


title: 12A_M_1930


title: 12A_M_1931


title: 12A_M_1515


title: 12A_M_1503


title: 12A_M_1929


title: 12A_M_1501


title: 12A_M_1514


title: 12A_M_1927


title: 12A_M_1928


title: 12A_M_15


title: 12A_M_1502


title: 12A_M_151


title: 12A_M_1497


title: 12A_M_1925


title: 12A_M_1498


title: 12A_M_1926


title: 12A_M_1495


title: 12A_M_1921


title: 12A_M_1920


title: 12A_M_1494


title: 12A_M_1499


title: 12A_M_1492


title: 12A_M_1923


title: 12A_M_1918


title: 12A_M_1491


title: 12A_M_149


title: 12A_M_1490


title: 12A_M_1919


title: 12A_M_1916


title: 12A_M_1917


title: 12A_M_1915


title: 12A_M_1487


title: 12A_M_1913


title: 12A_M_1489


title: 12A_M_1488


title: 12A_M_1914


title: 12A_M_150


title: 12A_M_1485


title: 12A_M_1924


title: 12A_M_1484


title: 12A_M_1911


title: 12A_M_1912


title: 12A_M_1496


title: 12A_M_1922


title: 12A_M_1910


title: 12A_M_1481


title: 12A_M_1908


title: 12A_M_1482


title: 12A_M_1909


title: 12A_M_1907


title: 12A_M_1480


title: 12A_M_1905


title: 12A_M_1906


title: 12A_M_1478


title: 12A_M_1901


title: 12A_M_148


title: 12A_M_1486


title: 12A_M_1900


title: 12A_M_1476


title: 12A_M_1904


title: 12A_M_1903


title: 12A_M_1477


title: 12A_M_1902


title: 12A_M_1899


title: 12A_M_1474


title: 12A_M_1897


title: 12A_M_147


title: 12A_M_1483


title: 12A_M_1473


title: 12A_M_1896


title: 12A_M_1471


title: 12A_M_1467


title: 12A_M_1472


title: 12A_M_1469


title: 12A_M_1898


title: 12A_M_1468


title: 12A_M_1895


title: 12A_M_1465


title: 12A_M_1894


title: 12A_M_1466


title: 12A_M_1893


title: 12A_M_1464


title: 12A_M_1460


title: 12A_M_1463


title: 12A_M_1889


title: 12A_M_1891


title: 12A_M_1461


title: 12A_M_1459


title: 12A_M_1888


title: 12A_M_1890


title: 12A_M_146


title: 12A_M_1892


title: 12A_M_1457


title: 12A_M_1887


title: 12A_M_1470


title: 12A_M_1886


title: 12A_M_1456


title: 12A_M_1884


title: 12A_M_1453


title: 12A_M_1881


title: 12A_M_1455


title: 12A_M_1885


title: 12A_M_1454


title: 12A_M_1452


title: 12A_M_1451


title: 12A_M_1882


title: 12A_M_1450


title: 12A_M_1879


title: 12A_M_145


title: 12A_M_1878


title: 12A_M_1449


title: 12A_M_1447


title: 12A_M_1876


title: 12A_M_1448


title: 12A_M_1875


title: 12A_M_1874


title: 12A_M_1446


title: 12A_M_1873


title: 12A_M_1444


title: 12A_M_1872


title: 12A_M_1883


title: 12A_M_1443


title: 12A_M_1871


title: 12A_M_1441


title: 12A_M_1880


title: 12A_M_1440


title: 12A_M_1868


title: 12A_M_1870


title: 12A_M_1437


title: 12A_M_1438


title: 12A_M_1867


title: 12A_M_1866


title: 12A_M_1435


title: 12A_M_1865


title: 12A_M_1864


title: 12A_M_1433


title: 12A_M_1863


title: 12A_M_1431


title: 12A_M_1862


title: 12A_M_1861


title: 12A_M_1445


title: 12A_M_1860


title: 12A_M_1430


title: 12A_M_1429


title: 12A_M_143


title: 12A_M_1859


title: 12A_M_1428


title: 12A_M_1427


title: 12A_M_144


title: 12A_M_1858


title: 12A_M_1855


title: 12A_M_1877


title: 12A_M_1856


title: 12A_M_1869


title: 12A_M_1424


title: 12A_M_1857


title: 12A_M_1854


title: 12A_M_1426


title: 12A_M_1425


title: 12A_M_1436


title: 12A_M_1853


title: 12A_M_1423


title: 12A_M_1851


title: 12A_M_1852


title: 12A_M_1421


title: 12A_M_1420


title: 12A_M_1434


title: 12A_M_1850


title: 12A_M_1848


title: 12A_M_1849


title: 12A_M_1419


title: 12A_M_142


title: 12A_M_1418


title: 12A_M_1415


title: 12A_M_1845


title: 12A_M_1417


title: 12A_M_1844


title: 12A_M_1843


title: 12A_M_1846


title: 12A_M_1412


title: 12A_M_1414


title: 12A_M_1411


title: 12A_M_1842


title: 12A_M_1840


title: 12A_M_1841


title: 12A_M_1408


title: 12A_M_1422


title: 12A_M_1839


title: 12A_M_1407


title: 12A_M_1838


title: 12A_M_1406


title: 12A_M_1837


title: 12A_M_1836


title: 12A_M_1405


title: 12A_M_1404


title: 12A_M_1403


title: 12A_M_1834


title: 12A_M_1402


title: 12A_M_1833


title: 12A_M_1847


title: 12A_M_1401


title: 12A_M_1400


title: 12A_M_1831


title: 12A_M_140


title: 12A_M_1832


title: 12A_M_1830


title: 12A_M_1409


title: 12A_M_1398


title: 12A_M_1828


title: 12A_M_1399


title: 12A_M_1396


title: 12A_M_1826


title: 12A_M_1827


title: 12A_M_1829


title: 12A_M_1395


title: 12A_M_1394


title: 12A_M_1824


title: 12A_M_1393


title: 12A_M_1823


title: 12A_M_1391


title: 12A_M_1392


title: 12A_M_1822


title: 12A_M_1825


title: 12A_M_1835


title: 12A_M_1820


title: 12A_M_1821


title: 12A_M_1389


title: 12A_M_1388


title: 12A_M_1819


title: 12A_M_1818


title: 12A_M_1386


title: 12A_M_1817


title: 12A_M_1816


title: 12A_M_1384


title: 12A_M_1382


title: 12A_M_1815


title: 12A_M_1380


title: 12A_M_1814


title: 12A_M_14


title: 12A_M_138


title: 12A_M_1812


title: 12A_M_1379


title: 12A_M_1813


title: 12A_M_1811


title: 12A_M_1810


title: 12A_M_1378


title: 12A_M_1376


title: 12A_M_1375


title: 12A_M_1808


title: 12A_M_1377


title: 12A_M_1390


title: 12A_M_1809


title: 12A_M_1374


title: 12A_M_1807


title: 12A_M_1806


title: 12A_M_1372


title: 12A_M_1387


title: 12A_M_1805


title: 12A_M_1373


title: 12A_M_1381


title: 12A_M_1802


title: 12A_M_1804


title: 12A_M_137


title: 12A_M_1370


title: 12A_M_1803


title: 12A_M_1800


title: 12A_M_1365


title: 12A_M_1799


title: 12A_M_1371


title: 12A_M_1801


title: 12A_M_1362


title: 12A_M_1798


title: 12A_M_1364


title: 12A_M_1797


title: 12A_M_1361


title: 12A_M_1360


title: 12A_M_1795


title: 12A_M_136


title: 12A_M_1359


title: 12A_M_1794


title: 12A_M_1792


title: 12A_M_1791


title: 12A_M_1355


title: 12A_M_1790


title: 12A_M_1354


title: 12A_M_1369


title: 12A_M_1353


title: 12A_M_1788


title: 12A_M_1787


title: 12A_M_1786


title: 12A_M_1351


title: 12A_M_1789


title: 12A_M_1784


title: 12A_M_135


title: 12A_M_1796


title: 12A_M_1350


title: 12A_M_1352


title: 12A_M_1348


title: 12A_M_1783


title: 12A_M_1782


title: 12A_M_1346


title: 12A_M_1781


title: 12A_M_1780


title: 12A_M_1793


title: 12A_M_1358


title: 12A_M_1778


title: 12A_M_1344


title: 12A_M_1779


title: 12A_M_1777


title: 12A_M_1342


title: 12A_M_1776


title: 12A_M_1785


title: 12A_M_1349


title: 12A_M_1347


title: 12A_M_1340


title: 12A_M_1775


title: 12A_M_1341


title: 12A_M_1338


title: 12A_M_1339


title: 12A_M_1337


title: 12A_M_1773


title: 12A_M_1771


title: 12A_M_1770


title: 12A_M_1334


title: 12A_M_1336


title: 12A_M_1769


title: 12A_M_1345


title: 12A_M_1774


title: 12A_M_1772


title: 12A_M_1768


title: 12A_M_1343


title: 12A_M_1332


title: 12A_M_1765


title: 12A_M_1333


title: 12A_M_1767


title: 12A_M_1766


title: 12A_M_133


title: 12A_M_1331


title: 12A_M_1329


title: 12A_M_1335


title: 12A_M_1763


title: 12A_M_1327


title: 12A_M_1762


title: 12A_M_1764


title: 12A_M_1326


title: 12A_M_1761


title: 12A_M_1323


title: 12A_M_1324


title: 12A_M_1759


title: 12A_M_1758


title: 12A_M_1322


title: 12A_M_1756


title: 12A_M_1321


title: 12A_M_1757


title: 12A_M_132


title: 12A_M_1760


title: 12A_M_1318


title: 12A_M_1316


title: 12A_M_1754


title: 12A_M_1753


title: 12A_M_1313


title: 12A_M_1312


title: 12A_M_1751


title: 12A_M_1752


title: 12A_M_1311


title: 12A_M_1748


title: 12A_M_131


title: 12A_M_1310


title: 12A_M_1749


title: 12A_M_1750


title: 12A_M_1325


title: 12A_M_1309


title: 12A_M_1747


title: 12A_M_1308


title: 12A_M_1307


title: 12A_M_1319


title: 12A_M_1305


title: 12A_M_1744


title: 12A_M_1745


title: 12A_M_1743


title: 12A_M_1755


title: 12A_M_1306


title: 12A_M_1746


title: 12A_M_1742


title: 12A_M_1741


title: 12A_M_1304


title: 12A_M_1314


title: 12A_M_1302


title: 12A_M_1739


title: 12A_M_1740


title: 12A_M_1303


title: 12A_M_1301


title: 12A_M_1300


title: 12A_M_130


title: 12A_M_13


title: 12A_M_1737


title: 12A_M_1736


title: 12A_M_1298


title: 12A_M_1734


title: 12A_M_1735


title: 12A_M_1299


title: 12A_M_1297


title: 12A_M_1296


title: 12A_M_1731


title: 12A_M_1293


title: 12A_M_1732


title: 12A_M_1728


title: 12A_M_1733


title: 12A_M_1729


title: 12A_M_1727


title: 12A_M_1730


title: 12A_M_1292


title: 12A_M_1726


title: 12A_M_1291


title: 12A_M_1294


title: 12A_M_1290


title: 12A_M_129


title: 12A_M_1724


title: 12A_M_1725


title: 12A_M_1723


title: 12A_M_1289


title: 12A_M_1738


title: 12A_M_1288


title: 12A_M_1722


title: 12A_M_1721


title: 12A_M_1285


title: 12A_M_1284


title: 12A_M_1720


title: 12A_M_1287


title: 12A_M_1719


title: 12A_M_1718


title: 12A_M_1282


title: 12A_M_1716


title: 12A_M_1281


title: 12A_M_1280


title: 12A_M_1283


title: 12A_M_1278


title: 12A_M_1275


title: 12A_M_1714


title: 12A_M_1715


title: 12A_M_1712


title: 12A_M_1710


title: 12A_M_1276


title: 12A_M_1277


title: 12A_M_1711


title: 12A_M_1274


title: 12A_M_1717


title: 12A_M_1709


title: 12A_M_1271


title: 12A_M_1273


title: 12A_M_1279


title: 12A_M_1708


title: 12A_M_1270


title: 12A_M_1707


title: 12A_M_1706


title: 12A_M_1267


title: 12A_M_1705


title: 12A_M_1703


title: 12A_M_1702


title: 12A_M_1699


title: 12A_M_1697


title: 12A_M_1698


title: 12A_M_1262


title: 12A_M_1263


title: 12A_M_1260


title: 12A_M_1700


title: 12A_M_1695


title: 12A_M_126


title: 12A_M_1696


title: 12A_M_1713


title: 12A_M_1258


title: 12A_M_1261


title: 12A_M_1693


title: 12A_M_1694


title: 12A_M_1692


title: 12A_M_1256


title: 12A_M_1691


title: 12A_M_1269


title: 12A_M_1268


title: 12A_M_1255


title: 12A_M_1690


title: 12A_M_1701


title: 12A_M_1254


title: 12A_M_1266


title: 12A_M_1265


title: 12A_M_1264


title: 12A_M_1686


title: 12A_M_1687


title: 12A_M_1251


title: 12A_M_1250


title: 12A_M_1684


title: 12A_M_1249


title: 12A_M_1683


title: 12A_M_1248


title: 12A_M_1682


title: 12A_M_1681


title: 12A_M_1685


title: 12A_M_1246


title: 12A_M_1257


title: 12A_M_1247


title: 12A_M_1680


title: 12A_M_1689


title: 12A_M_1245


title: 12A_M_1679


title: 12A_M_1678


title: 12A_M_1244


title: 12A_M_1243


title: 12A_M_1242


title: 12A_M_1677


title: 12A_M_1676


title: 12A_M_1241


title: 12A_M_1675


title: 12A_M_124


title: 12A_M_1674


title: 12A_M_1253


title: 12A_M_1252


title: 12A_M_1673


title: 12A_M_1238


title: 12A_M_1671


title: 12A_M_1237


title: 12A_M_1672


title: 12A_M_1670


title: 12A_M_1235


title: 12A_M_1236


title: 12A_M_1669


title: 12A_M_1667


title: 12A_M_1232


title: 12A_M_1234


title: 12A_M_1233


title: 12A_M_1231


title: 12A_M_1665


title: 12A_M_123


title: 12A_M_1230


title: 12A_M_1664


title: 12A_M_1666


title: 12A_M_1663


title: 12A_M_1229


title: 12A_M_1662


title: 12A_M_1661


title: 12A_M_1227


title: 12A_M_1660


title: 12A_M_1226


title: 12A_M_1225


title: 12A_M_1659


title: 12A_M_1239


title: 12A_M_1224


title: 12A_M_1668


title: 12A_M_1657


title: 12A_M_1223


title: 12A_M_1656


title: 12A_M_1658


title: 12A_M_1655


title: 12A_M_1221


title: 12A_M_122


title: 12A_M_1652


title: 12A_M_1218


title: 12A_M_1653


title: 12A_M_1219


title: 12A_M_1217


title: 12A_M_1651


title: 12A_M_1650


title: 12A_M_1215


title: 12A_M_1649


title: 12A_M_1648


title: 12A_M_1216


title: 12A_M_1647


title: 12A_M_1214


title: 12A_M_1213


title: 12A_M_1211


title: 12A_M_1645


title: 12A_M_1212


title: 12A_M_1646


title: 12A_M_1222


title: 12A_M_1643


title: 12A_M_121


title: 12A_M_1644


title: 12A_M_1220


title: 12A_M_1641


title: 12A_M_1208


title: 12A_M_1210


title: 12A_M_1209


title: 12A_M_1654


title: 12A_M_1638


title: 12A_M_1640


title: 12A_M_1207


title: 12A_M_1639


title: 12A_M_1637


title: 12A_M_1205


title: 12A_M_1203


title: 12A_M_1206


title: 12A_M_1636


title: 12A_M_1202


title: 12A_M_1204


title: 12A_M_1635


title: 12A_M_1201


title: 12A_M_1634


title: 12A_M_1200


title: 12A_M_1633


title: 12A_M_120


title: 12A_M_1631


title: 12A_M_1632


title: 12A_M_1642


title: 12A_M_12


title: 12A_M_1630


title: 12A_M_1198


title: 12A_M_1629


title: 12A_M_1197


title: 12A_M_1628


title: 12A_M_1195


title: 12A_M_1626


title: 12A_M_1196


title: 12A_M_1192


title: 12A_M_1624


title: 12A_M_1191


title: 12A_M_1190


title: 12A_M_1621


title: 12A_M_1622


title: 12A_M_1188


title: 12A_M_119


title: 12A_M_1619


title: 12A_M_1187


title: 12A_M_1199


title: 12A_M_1186


title: 12A_M_1618


title: 12A_M_1617


title: 12A_M_1185


title: 12A_M_1616


title: 12A_M_1614


title: 12A_M_1182


title: 12A_M_1615


title: 12A_M_1181


title: 12A_M_1627


title: 12A_M_1625


title: 12A_M_1193


title: 12A_M_1194


title: 12A_M_1623


title: 12A_M_1611


title: 12A_M_1612


title: 12A_M_1613


title: 12A_M_1180


title: 12A_M_118


title: 12A_M_1610


title: 12A_M_1620


title: 12A_M_1174


title: 12A_M_1608


title: 12A_M_1607


title: 12A_M_1173


title: 12A_M_1172


title: 12A_M_1171


title: 12A_M_1606


title: 12A_M_1170


title: 12A_M_1184


title: 12A_M_117


title: 12A_M_1605


title: 12A_M_1604


title: 12A_M_1603


title: 12A_M_1602


title: 12A_M_1169


title: 12A_M_1601


title: 12A_M_1167


title: 12A_M_1168


title: 12A_M_1600


title: 12A_M_1177


title: 12A_M_1599


title: 12A_M_1164


title: 12A_M_1166


title: 12A_M_1175


title: 12A_M_1163


title: 12A_M_1165


title: 12A_M_1598


title: 12A_M_1596


title: 12A_M_1597


title: 12A_M_1162


title: 12A_M_1595


title: 12A_M_1161


title: 12A_M_1160


title: 12A_M_1594


title: 12A_M_1593


title: 12A_M_116


title: 12A_M_1609


title: 12A_M_1592


title: 12A_M_1159


title: 12A_M_1158


title: 12A_M_1156


title: 12A_M_1589


title: 12A_M_1154


title: 12A_M_1153


title: 12A_M_1587


title: 12A_M_1588


title: 12A_M_1585


title: 12A_M_1152


title: 12A_M_1586


title: 12A_M_1151


title: 12A_M_115


title: 12A_M_1150


title: 12A_M_1582


title: 12A_M_1149


title: 12A_M_1584


title: 12A_M_1148


title: 12A_M_1579


title: 12A_M_1581


title: 12A_M_1143


title: 12A_M_1146


title: 12A_M_1580


title: 12A_M_1578


title: 12A_M_1144


title: 12A_M_1142


title: 12A_M_1591


title: 12A_M_1575


title: 12A_M_1590


title: 12A_M_1583


title: 12A_M_1577


title: 12A_M_1141


title: 12A_M_1147


title: 12A_M_1574


title: MRSL_Control

type: RNA

city: Blacksburg

first: Irving

middle: Coy

last: Allen

state: VA

address: 205 Duck Pond Dr.

department: Biomedical Sciences and Pathobiology

institute: Virginia-Maryland College of Veterinary Medicine

description: Clariom S Affymetrix and ThermoFisher

hyb_protocol: Performed by ThermoFisher ClariomS services

data_processing: CHP data provided by ThermoFisher ClariomS services. Researchers analyzed data using the Transcriptome Analysis Console (ThermoFisher, Applied Biosystems)

label: Biotin

molecule: total RNA

source_name: Mouse RNA MRSL vendor control

growth_protocol: 8-12 week old mice on a C57Bl6/J background were I.P. injected with 10 mg/kg body weight of Azoxymethane (AOM) on day 0 followed by 3 cycles of 2.5% dextran sodium sulfate (DSS) exposure in their drinking water for 5 days followed by 14 days of resting on normal drinking water ad libitum. Mice were euthanized days 57-60. Colons were excised. Represesentative macroscopic polyp was collected as lesion tissue (LT) and adjacent non-lesioned "healthy tissue" was collected from each mouse. Tissue was flash frozen on dry ice and stored in -80 freezer until processing.

extract_protocol: Qiagen AllPrep kit per manufacturer's protocols

tag: background strain

value: Mouse RNA MRSL vendor control

tag: mouse strain

tag: treatment

tag: tissue

tag: tissue type


title: 12A_M_1140


title: sample8-Normal

city: Guiyang

first: Gu

last: Yan

state: Guizhou

address: Huaxi

country: China

institute: Guizhou Medical University

library_source: transcriptomic

data_processing:
DNBSEQ UMI Small RNA
Obtained clean tags by filtering use the software SOAPnuke. The filtering rules were as follows: removed low quality tags; removed tags with 5’ primer contaminants; remove tags without 3’ primer; removed tags without insertion; removed tags with poly A; removed tags shorter than 15nt.
After filtering, clean tags were mapped to the reference genome and others sRNA database using Bowtie2(Parameters: --minSize 15 --polyA 0.7 --qualSys 2). Particularly, cmsearch was performed for Rfam (V13.0 ) mapping.
Assembly: GCF_000001405.39_GRCh38.p13t
Supplementary files format and content: Tab-separated text files include Count values for each Sample

organism: Homo sapiens

source_name: serum

extract_protocol:
Thaw serum samples. Transfer 200 µL serum into a 2 mL microcentrifuge tube, add 1000 μL QIAzol Lysis Reagent. Extracting RNA using chloroform and anhydrous ethanol.  Pipet   solution onto the RNeasy MinElute spin column and centrifuge for 15 s at 10000×g.Discard the flow-through. Repeat  until all the solution has passed the spin column membrane. Add RWT, RPE, and RPE washing sequentially, and  transfer to a new collection tube and incubate with  RNase-free water. Centrifuge for 2 min at 12000×g to elute the RNA.
Small RNA sequencing uses next-generation sequencing technology to sequence the miRNAs (18-30 nt or 18-40 nt nucleotide) of serum tissue. The sequencing data are then further aligned with miRbase and Rfam database to identify and analyse small RNA sequence.

value: serum

tag: cancer type

value: Normal

tag: group

value: control


title: sample5-BRCA

value: BRCA


title: sample7-BRCA


title: 12A_M_1573


title: sample6-BRCA


title: sample4-BRCA


title: 12A_M_1572


title: Rfl 4 LT

description: Clariom S Affymetrix and ThermoFisher

scan_protocol: Performed by ThermoFisher ClariomS services

source_name: RelAfl/fl #4 LT

value: RelAfl/fl

value: AOM/DSS

value: colon

value: LT


title: Rfl 2 HT

description: Clariom S Affymetrix and ThermoFisher

source_name: RelAfl/fl #2 HT

label_protocol: Performed by ThermoFisher ClariomS services

value: HT


title: Rfl 4 HT

description: Clariom S Affymetrix and ThermoFisher

source_name: RelAfl/fl #4 HT


title: Rfl 2 LT

description: Clariom S Affymetrix and ThermoFisher

source_name: RelAfl/fl #2 LT


title: 12A_M_1139


title: RL+ 3 LT

description: Clariom S Affymetrix and ThermoFisher

source_name: RelAfl/fl x LysM #3 LT

value: RelAfl/fl x LysM


title: 12A_M_1138


title: Rfl 1 HT

description: Clariom S Affymetrix and ThermoFisher

source_name: RelAfl/fl #1 HT


title: sample1-CRC

value: CRC

value: treat


title: sample2-CRC


title: 12A_M_1571


title: 12A_M_1137


title: Input_mES

city: New York

first: Rajal

last: Sharma

state: NY

address: 1425 Madison Ave., Room 16-52

institute: ISMMS

data_processing:
Basecalls performed using CASAVA version 1.4
Read sequences were filtered by Trimmomatic
ChIP-seq reads were aligned to the mm9 genome assembly using Bowtie2
Peaks were called using MACS with Input as control with the following setting: pvalue cutoff (1.00e-05), model fold (10, 30).
Assembly: mm9
Supplementary files format and content: Wig files generated by computing feature density over a 10 bp window across the genome. http://genome.ucsc.edu/goldenPath/help/wiggle.html

source_name: ES cells

extract_protocol:
For ChIP-Seq: Whole cell lysates were sonicated after cross-linking and protein-DNA complexes were isolated with antibodies.
ChIP-Seq: ChIP-DNA was end repaired with T4 DNA polymerase and polynucleotide kinase. An A-base was added to the end-repaired DNA fragments. Solexa adaptors were ligated to the ChIP DNA fragments and 200-300bp size fractions were excised from 2% agarose gel stained with GelStar. Adaptor-modified fragments were enriched by 16 cycles of PCR amplification. The DNA library prep was validated in Bioanalyzer for quantity and size. RNA-Seq: Extracted RNA was subjected to polyA selection and standard Illumina RNA-seq library prep procedures.

treatment_protocol: Differentiation was induced in mouse ES Cells by treatment with 1uM Retinoic Acid for 48 hours

tag: antibody


title: sample11-Normal


title: sample10-Normal


title: RL+ 3 HT

description: Clariom S Affymetrix and ThermoFisher

source_name: RelAfl/fl x LysM #3 HT


title: 12A_M_1136


title: RL+ 2 HT

description: Clariom S Affymetrix and ThermoFisher

source_name: RelAfl/fl x LysM #2 HT


title: Rfl 1 LT

description: Clariom S Affymetrix and ThermoFisher

source_name: RelAfl/fl #1 LT


title: RL+ 1 LT

description: Clariom S Affymetrix and ThermoFisher

source_name: RelAfl/fl x LysM #1 LT


title: Nikfl 3 HT

description: Clariom S Affymetrix and ThermoFisher

source_name: Nikfl/fl #3 HT

value: Nikfl/fl


title: RL+ 2 LT

description: Clariom S Affymetrix and ThermoFisher

source_name: RelAfl/fl x LysM #2 LT


title: Nikfl 1 HT

description: Clariom S Affymetrix and ThermoFisher

source_name: Nikfl/fl #1 HT


title: 12A_M_1570

source_name: C57BL/6J Male P56 Mouse Brain


title: Ash1l_mES


title: RL+ 1 HT

description: Clariom S Affymetrix and ThermoFisher

source_name: RelAfl/fl x LysM #1 HT


title: NV+ 3HT

description: Clariom S Affymetrix and ThermoFisher

source_name: Nikfl/fl x VillinCre #3 HT

value: Nikfl/fl x VillinCre


title: Nikfl 6 LT

description: Clariom S Affymetrix and ThermoFisher

source_name: Nikfl/fl #6 LT


title: Nikfl 12 LT

description: Clariom S Affymetrix and ThermoFisher

source_name: Nikfl/fl #12 LT


title: Nikfl 8 LT

description: Clariom S Affymetrix and ThermoFisher

source_name: Nikfl/fl #8 LT


title: Nikfl 2 HT

description: Clariom S Affymetrix and ThermoFisher

source_name: Nikfl/fl #2 HT


title: NV+ 2 HT

description: Clariom S Affymetrix and ThermoFisher

source_name: Nikfl/fl x VillinCre #2 HT


title: RNA_Heart_TRα1+/m_T3_49

city: Lübeck

first: Riccardo

last: Dore

state: Schleswig-Holstein

address: Ratzeburger Allee 160

department: Institute of Endocrinology and Diabetes

country: Germany

institute: University of Lübeck

description: Gene expression data whole heart of TRα1R384+/m male offspring of T3-treated dams

hyb_protocol: Hybridization was conducted in accordance to Applied Biosystems GeneChipTM WT Pico Reagent Kit

scan_protocol: GeneChipTM Mouse Gene 2.0 ST array were scanned using GeneChipTM Scanner 3000 HR

data_processing: The raw data was analyzed using the RMA and Median Polish algorithms of the Affymetrix Transcriptome Analysis Console 4.0.1 workflow

source_name: Whole heart

label_protocol: Biotinylation of cRNA was conducted in accordance to Applied Biosystems GeneChipTM WT Pico Reagent Kit

growth_protocol: After mating, female mice were single housed after positive plug check (in order to monitor water/T3 intake as well) at 22°C under constant 12h light/dark cycle with ad libitum access to food and water. Offspring were always group house at 22°C under constant 12h light/dark cycle with ad libitum access to food and water.

extract_protocol: RNA isolation was performed with Qiagen Rneasy Fibrous Tissue Mini Kit in accordance to manufacturer´s istructions

treatment_protocol: T3-treated dams received T3 in the drinking water (0.5 mg/L) + 0.01% BSA from embryonic day 12.5 to 18.5, while the drinking water of control dams only contained 0.01% BSA. Offspring were NEVER treated.

tag: genotype

tag: gender

value: Male

value: 4-5 months

tag: housing temperature

value: Offspring of T3-treated dam

value: Whole heart


title: RNA_Heart_TRα1+/m_T3_51


title: ACH0375 genomic DNA

type: genomic

city: Research Triangle Park

first: Xuting

last: Wang

state: NC

address: 111 TW Alexander Dr

institute: NIEHS/NIH

description: ACH0375 genomic DNA

hyb_protocol: bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 and MethylationEPIC Beadchips using standard Illumina protocol

scan_protocol: Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting

data_processing:
ChAMP
Matrix_processed: Average Beta (normalized using ChAMP)

label: Cy5 and Cy3

label_protocol: 500 ng of DNA was bisulfite converted using the EZ-DNA Methylation kit (Zymo Research)

extract_protocol: Nucleated DNA from whole blood was collected after sucrose-induced osmotic lysis of cells followed by phenol-chloroform extraction and DNA was stored in Tris-EDTA buffer at -20°C.

tag: Sex

value: Female

value: whole blood


title: 12A_M_1568


title: ACH0374 genomic DNA

description: ACH0374 genomic DNA


title: 12A_M_1134


title: NV+ 1 LT

description: Clariom S Affymetrix and ThermoFisher

source_name: Nikfl/fl x VillinCre #1 LT


title: NV+ 3 LT

description: Clariom S Affymetrix and ThermoFisher

source_name: Nikfl/fl x VillinCre #3 LT


title: ACH0373 genomic DNA

description: ACH0373 genomic DNA


title: ACH0371 genomic DNA

description: ACH0371 genomic DNA


title: RNA_Heart_TRα1+/m_T3_50


title: NV+ 1 HT

description: Clariom S Affymetrix and ThermoFisher

source_name: Nikfl/fl x VillinCre #1 HT


title: ACH0372 genomic DNA

description: ACH0372 genomic DNA


title: RNA_Heart_TRα1+/m_T3_17


title: RNA_Heart_Wt_T3_47

description: Gene expression data whole heart of wildtype male offspring of T3-treated dams

value: Wildtype (TRalpha1R384+/+)


title: ACH0369 genomic DNA

description: ACH0369 genomic DNA


title: NV+ 2 LT

description: Clariom S Affymetrix and ThermoFisher

source_name: Nikfl/fl x VillinCre #2 LT


title: 12A_M_1569


title: RNA_Heart_Wt_T3_46


title: RNA_Heart_Wt_T3_48


title: RNA_Heart_TRα1+/m_T3_55


title: ACH0368 genomic DNA

description: ACH0368 genomic DNA


title: RNA_Heart_Wt_T3_14


title: RNA_Heart_TRα1+/m_T3_16


title: 12A_M_1135


title: ACH0370 genomic DNA

description: ACH0370 genomic DNA


title: 12A_M_1567


title: 12A_M_1133


title: 12A_M_1132


title: 12A_M_1566


title: RNA_Heart_TRα1+/m_H2O_54

description: Gene expression data whole heart of TRα1R384+/m male offspring of H2O-treated dams

value: Offspring of H2O-treated dam


title: 12A_M_1565


title: RNA_Heart_TRα1+/m_H2O_5


title: 12A_M_1131


title: ACH0367 genomic DNA

description: ACH0367 genomic DNA


title: RNA_Heart_Wt_T3_13


title: 12A_M_1564


title: ACH0363 genomic DNA

description: ACH0363 genomic DNA


title: RNA_Heart_Wt_H2O_58

description: Gene expression data whole heart of wildtype male offspring of H2O-treated dams


title: RNA_Heart_TRα1+/m_H2O_52


title: 12A_M_1563


title: ACH0366 genomic DNA

description: ACH0366 genomic DNA


title: RNA_Heart_TRα1+/m_H2O_4


title: RNA_Heart_Wt_H2O_37


title: RNA_Heart_Wt_H2O_56


title: RNA_Heart_TRα1+/m_H2O_53


title: RNA_Heart_TRα1+/m_H2O_6


title: RNA_Heart_Wt_H2O_57


title: RNA_Heart_Wt_H2O_39


title: ACH0365 genomic DNA

description: ACH0365 genomic DNA


title: 12A_M_1562


title: ACH0360 genomic DNA

description: ACH0360 genomic DNA


title: 12A_M_1130


title: Heart_TRα1_T3_2

description: Gene expression data whole heart of TRα1+/m male mice house at 30°C with T3 (0.5 mg/L, 12 days)

growth_protocol: Mice were single housed (to monitor water/T3 intake) at 30°C under constant 12h light/dark cycle with ad libitum accedd to food and water

treatment_protocol: T3-treated mice received T3 in the drinking water (0.5 mg/L) + 0.01% BSA while the drinking water of control animals only contained 0.01% BSA

value: TR{alpha}1 R384C+/m

value: 3-6 month

tag: organ


title: ACH0364 genomic DNA

description: ACH0364 genomic DNA


title: Heart_TRα1_T3_5


title: Heart_TRα1_T3_3


title: ACH0362 genomic DNA

description: ACH0362 genomic DNA


title: 12A_M_113


title: Heart_TRα1_T3_1


title: ACH0358 genomic DNA

description: ACH0358 genomic DNA


title: 12A_M_1128


title: RNA_Heart_Wt_H2O_2


title: Heart_TRα1_H2O_3

description: Gene expression data whole heart of TRα1+/m male mice house at 30°C with tap water


title: ACH0359 genomic DNA

description: ACH0359 genomic DNA


title: 12A_M_1129


title: Heart_TRα1_H2O_5


title: Heart_TRα1_H2O_2


title: Heart_TRα1_H2O_4


title: Heart_TRα1_T3_4


title: Heart_Wt_T3_4

description: Gene expression data whole heart of wild type C57BL/6NCr male mice house at 30°C with T3 (0.5 mg/L, 12 days)

value: Wildtype


title: Heart_TRα1_H2O_1


title: 12A_M_1561


title: ACH0361 genomic DNA

description: ACH0361 genomic DNA


title: Heart_Wt_T3_3


title: 12A_M_1127


title: ACH0355 genomic DNA

description: ACH0355 genomic DNA


title: ACH0357 genomic DNA

description: ACH0357 genomic DNA


title: 12A_M_1560


title: 12A_M_1559


title: ACH0356 genomic DNA

description: ACH0356 genomic DNA


title: ACH0353 genomic DNA

description: ACH0353 genomic DNA


title: ACH0354 genomic DNA

description: ACH0354 genomic DNA


title: 12_MCF7_NR2F1

city: Shanghai

first: Guohong

last: Hu

address: 320 Yueyang Road

institute: Shanghai Institute of Nutrition and Health

description:
processed data file:
gene_count_mat_NR2F1_OE.xlsx
isoform_count_mat_NR2F1_OE.xlsx
gene_CPM_TMM_anno_NR2F1_OE.xlsx
isoform_CPM_TMM_anno_NR2F1_OE.xlsx

data_processing:
Read quality were performed for all samples by using FastQC (version 0.11.2) (Andrews.2010) software with the default parameters.
Skewer (v0.2.2) (Bolger AM, el at. 2014) software was used to remove the adapter sequence of raw data(Fastq) and the reads whose length is longer than 75bp were selected after adapters were removed. Then the selected reads, named as Clean reads, were used for downstream analysis.
The alignment analysis can basically be divided into two steps: 1)genemeGenerate Build an index; 2) Sequence alignment. In this project, clean reads of each sample were align to reference genome by using STAR software with default parameters.
Expression estimation of gene and transcript was performed by using RSEM, TMM and CPM normalized read counts of genes were applied to compare between two samples in the downstream analysis.
Genes whose CPM and TMM value is greater than 5 in at least one sample were selected. The criteria for significantly differentially expressed genes was: |FC| >= 2.
Genome_build: hg19
Supplementary_files_format_and_content: Processed data were xls format.

growth_protocol: MCF10 breast cancer cell line series were cultured in 1:1 DMEM/F-12 supplemented with 5% horse serum, 10ug/ml insulin, 20ng/ml EFG, 0.5ug/ml hydrocortizone and 1% Pen/Strep. MCF7 cells were cultured in DMEM supplemented with 10% FBS, 1x NEAA and 1mM Na.Pyruvate.

extract_protocol:
Trizol reagent was used to extract RNA, then total RNA was subjected to Hiseq PE150 RNA-Seq.
Rribosomal-RNA was removed and the rest was used for library construction. RNA libraries were prepared for sequencing using standard Illumina protocols.

treatment_protocol: no treatment.

tag: cell line

tag: cell type

value: epithelial-like

tag: nr2f1-as1 knockdown

value: No

tag: nr2f1 overexpression

value: Yes


title: Heart_Wt_H2O_6

description: Gene expression data whole heart of wild type C57/BL6NCr male mice house at 30°C with tap water

tag: strain

tag: age


title: Heart_Wt_T3_5

tag: treatment


title: Heart_Wt_T3_1


title: 10_MCF10CA1h_NR2F1

value: mesenchymal-like


title: 12A_M_1125

tag: brain region


title: Heart_Wt_T3_2


title: Heart_Wt_T3_6


title: Heart_Wt_H2O_5


title: 9_MCF10CA1h_Plvx


title: 11_MCF7_pLVX


title: ACH0351 genomic DNA

description: ACH0351 genomic DNA

tag: tissue


title: Heart_Wt_H2O_2


title: Heart_Wt_H2O_3


title: Heart_Wt_H2O_4


title: 12A_M_1126


title: 12A_M_1557


title: ACH0350 genomic DNA

description: ACH0350 genomic DNA


title: 6_CA1h-P2_pSuper

description:
processed data file:
gene_count_mat_NAS1_KD.xlsx
isoform_count_mat_NAS1_KD.xlsx
gene_CPM_TMM_anno_NAS1_KD.xlsx
isoform_CPM_TMM_anno_NAS1_KD.xlsx

tag: subpopulation

value: CD24- CD44high (termed as P2)


title: 8_CA1h-P2_shNAS1#2


title: 12A_M_1558


title: 7_CA1h-P2_shNAS1#1


title: 5_CA1h-P2

description:
processed data file:
gene_count_mat_MCF10_cells.xlsx
isoform_count_mat_MCF10_cells.xlsx
gene_CPM_TMM_anno_MCF10_cells.xlsx
isoform_CPM_TMM_anno_MCF10_cells.xlsx


title: RNA_Heart_Wt_T3_15


title: ACH0349 genomic DNA

description: ACH0349 genomic DNA


title: 12A_M_1556


title: 12A_M_1123


title: 4_CA1h-P1

value: CD24- CD44med (termed as P1)


title: 12A_M_1122


title: 3_MCF10CA1a


title: ACH0348 genomic DNA

description: ACH0348 genomic DNA


title: 1_MCF10AT


title: 12A_M_1555


title: ACH0352 genomic DNA

description: ACH0352 genomic DNA


title: 2_MCF10CA1h


title: 12A_M_1121


title: AT_29_RC17_hGPC_IFN_gamma_S33

city: Lund

first: Johan

last: Jakobsson

address: Sölvegatan 17

department: Wallenberg Neuroscience Center

country: Sweden

institute: Lund University

description:
Illumina Truseq
ERV_count_matrix_2.csv

data_processing:
Unique mapping using STAR aligner (--outFilterMultimapNmax 1, --outFilterMismatchNoverLmax 0.03)
ERV predictions from RetroTector (https://github.com/PatricJernLab/RetroTector) were quantified using featureCounts (Subread version 1.6.3), forcing matching strandness of the reads to the features being quantified (-s 2).
BAM files were indexed using samtools (version 1.12) and converted to bigwig files using deeptools bamCompare (version 2.5.4) (--normalizeUsingRPKM)
Assembly: GRCh38
Supplementary files format and content: Bulk RNAseq bigwigs for genome browser visualization
Supplementary files format and content: Bulk RNAseq ERV quantification read count matrix

molecule: polyA RNA

source_name: hGPC IFN gamma

extract_protocol:
RC17-derived glial progenitor cells were plated on laminin 521 (2μg/cm2) coated plates in a terminal differentiation medium. Cells were matured for 14 days and stimulated with IFN-g (5ng/ml) for 48hrs in the culture medium. Post stimulation, cells were washed twice with 1XPBS and detached with accutase and pellets were frozen down on dry ice for bulk-RNA seq.
Total RNA was isolated using the Rneasy Mini Kit (Qiagen).
Libraries were generated using Illumina TruSeq Stranded mRNA library prep kit (poly-A selection) and were sequenced on an Illumina NextSeq500 machine (paired-end 2×150bp).

tag: condition

value: IFN gamma +

value: hGPC

value: IFN gamma


title: Heart_Wt_H2O_1

value: Male

value: Whole heart


title: AT_28_RC17_hGPC_IFN_gamma_S13

description:
Illumina Truseq
ERV_count_matrix_2.csv


title: AT_26_RC17_hGPC_non_treated_S32

description:
Illumina Truseq
ERV_count_matrix_2.csv

source_name: hGPC non treated

value: Non treated

value: untreated


title: ACH0344 genomic DNA

description: ACH0344 genomic DNA

value: Female

value: whole blood


title: ACH0347 genomic DNA

description: ACH0347 genomic DNA


title: AT_25_RC17_hGPC_non_treated_S18

description:
Illumina Truseq
ERV_count_matrix_2.csv


title: AT_30_RC17_hGPC_IFN_gamma_S39

description:
Illumina Truseq
ERV_count_matrix_2.csv


title: ACH0343 genomic DNA

description: ACH0343 genomic DNA


title: AT_27_RC17_hGPC_non_treated_S41

description:
Illumina Truseq
ERV_count_matrix_2.csv


title: 12A_M_1120


title: ACH0342 genomic DNA

description: ACH0342 genomic DNA


title: 12A_M_1554


title: 12A_M_1553


title: ACH0341 genomic DNA

description: ACH0341 genomic DNA


title: 12A_M_112


title: 88T miRNA

city: Moscow

first: Anastasiya

last: Kobelyatskaya

address: Vavilov str, 32

country: Russia

institute: Engelhardt Institute of Molecular Biology, RAS

data_processing:
STAR+featureCounts - mRNA, miRge3.0 - miRNA (Hg37)
Assembly: Hg37
Supplementary files format and content: counts mRNA/miRNA in tsv files

source_name: primary tumor

extract_protocol:
MagNA Lyser device + MagNA Pure Compact System + MagNA Pure Compact RNA Kit
mRNA / miRNA libraries were prepared using the TruSeq Stranded mRNA Kit / NEBNext Small RNA Library Prep Set for Illumina according to the manufacturer’s protocol.Sequencing was performed on a NextSeq500 system (Illumina, San Diego, CA, USA) using a NextSeq 500/550 High Output Kit v2.5 (Illumina), read mode single.

value: primary tumor

tag: disease

value: prostate cancer

value: male

tag: risk group

value: high

tag: lapc

value: lapc

tag: gleason primary

tag: gleason secondary

tag: gleason sum

tag: isup

tag: pt

tag: pn

tag: cm

tag: ln percent

tag: r residual_tumor

tag: preop psa

tag: tmprss2 erg

value: NO


title: 85T miRNA

tag: tissue

tag: cell type

tag: Sex

tag: age

tag: biochemical recurrence

value: brf

tag: postop psa

value: YES

tag: treatment


title: 95T miRNA

tag: disease

tag: risk group

tag: lapc

tag: gleason primary

tag: gleason secondary

value: bcr


title: ACH0346 genomic DNA

description: ACH0346 genomic DNA


title: 81T miRNA

tag: gleason sum

tag: isup

tag: pt

tag: pn

tag: cm


title: 70T miRNA

tag: tissue

tag: ln percent

tag: r residual_tumor

tag: preop psa

tag: tmprss2 erg


title: 69T miRNA

tag: cell type

tag: Sex

tag: age


title: 12A_M_1552

tag: brain region

tag: strain


title: 63T miRNA

tag: disease

tag: risk group

tag: lapc

tag: gleason primary

tag: biochemical recurrence

tag: postop psa

tag: treatment


title: 12A_M_1119


title: ACH0338 genomic DNA

description: ACH0338 genomic DNA

tag: tissue


title: ACH0339 genomic DNA

description: ACH0339 genomic DNA


title: 6T miRNA

tag: gleason secondary

tag: gleason sum

tag: isup

tag: pt

tag: pn

tag: cm

tag: ln percent


title: 74T miRNA

tag: cell type

tag: Sex

tag: age

tag: r residual_tumor

tag: preop psa

tag: tmprss2 erg


title: 12A_M_1118

tag: brain region

tag: strain


title: ACH0340 genomic DNA

description: ACH0340 genomic DNA


title: 12A_M_1551


title: ACH0337 genomic DNA

description: ACH0337 genomic DNA


title: 55T miRNA

tag: disease

tag: risk group

tag: lapc

tag: gleason primary

tag: biochemical recurrence

tag: postop psa

tag: treatment


title: ACH0336 genomic DNA

description: ACH0336 genomic DNA

tag: tissue


title: 58T miRNA

tag: gleason secondary

tag: gleason sum

tag: isup

tag: pt

tag: pn

tag: cm

tag: ln percent


title: 54T miRNA

tag: cell type

tag: Sex

tag: age

tag: r residual_tumor

tag: preop psa

tag: tmprss2 erg


title: 52T miRNA

tag: disease

tag: risk group

tag: lapc

tag: gleason primary


title: 12A_M_1550

tag: brain region

tag: strain


title: 80T miRNA

tag: tissue

tag: gleason secondary

tag: gleason sum

tag: isup

tag: biochemical recurrence

tag: postop psa

tag: treatment


title: 5T miRNA

tag: cell type

tag: Sex

tag: age

tag: pt

tag: pn

tag: cm

tag: ln percent


title: 49T miRNA

tag: disease

tag: risk group

tag: lapc

tag: gleason primary

tag: r residual_tumor

tag: preop psa

tag: tmprss2 erg


title: ACH0335 genomic DNA

description: ACH0335 genomic DNA

tag: tissue


title: 41T miRNA

tag: gleason secondary

tag: gleason sum

tag: isup

value: Rx

tag: biochemical recurrence

tag: postop psa


title: 59T miRNA

tag: cell type

tag: Sex

tag: age

tag: pt

tag: treatment


title: 12A_M_1116

tag: brain region

tag: strain


title: 12A_M_1548


title: ACH0334 genomic DNA

description: ACH0334 genomic DNA


title: 79T miRNA

tag: disease

tag: risk group

tag: lapc

tag: gleason primary

tag: pn

tag: cm

tag: ln percent


title: 50T miRNA

tag: tissue

tag: gleason secondary

tag: gleason sum

tag: isup

tag: r residual_tumor

tag: preop psa

tag: tmprss2 erg


title: ACH0331 genomic DNA

description: ACH0331 genomic DNA

tag: Sex


title: 12A_M_1549

tag: brain region

tag: age


title: ACH0333 genomic DNA

description: ACH0333 genomic DNA


title: 12A_M_1547

tag: strain


title: 51T miRNA

tag: cell type

tag: disease

tag: risk group

tag: pt

tag: treatment


title: 318T miRNA

tag: lapc

tag: gleason primary

tag: pn

tag: cm

tag: ln percent

tag: biochemical recurrence

tag: postop psa


title: ACH0332 genomic DNA

description: ACH0332 genomic DNA

tag: tissue


title: ACH0330 genomic DNA

description: ACH0330 genomic DNA

tag: Sex


title: 36T miRNA

tag: gleason secondary

tag: gleason sum

tag: isup

tag: r residual_tumor

tag: preop psa

tag: tmprss2 erg


title: 38T miRNA

tag: cell type

tag: disease

tag: age

tag: risk group

tag: pt


title: 317T miRNA

tag: lapc

tag: gleason primary

tag: pn

tag: cm

tag: treatment


title: 12A_M_1114

tag: brain region

tag: strain


title: ACH0328 genomic DNA

description: ACH0328 genomic DNA

tag: Sex

tag: tissue


title: 316T miRNA

tag: gleason secondary

tag: gleason sum

tag: isup

tag: ln percent

tag: r residual_tumor

tag: biochemical recurrence

tag: postop psa


title: 315T miRNA

tag: cell type

tag: disease

tag: age

tag: risk group

tag: pt

tag: preop psa

tag: tmprss2 erg


title: 12A_M_1117

tag: brain region

tag: strain


title: 12A_M_1546


title: 314T miRNA

tag: tissue

tag: Sex

tag: lapc

tag: gleason primary

tag: pn

tag: cm

tag: treatment


title: ACH0326 genomic DNA

description: ACH0326 genomic DNA


title: 4T miRNA

tag: gleason secondary

tag: gleason sum

tag: isup

tag: ln percent

tag: r residual_tumor

tag: biochemical recurrence

tag: postop psa


title: 12A_M_1113

tag: age


title: 313T miRNA

tag: cell type

tag: disease

tag: risk group

tag: pt

tag: preop psa

tag: tmprss2 erg


title: ACH0325 genomic DNA

description: ACH0325 genomic DNA

tag: Sex

tag: tissue


title: 312T miRNA

tag: lapc

tag: gleason primary

tag: pn

tag: cm

tag: treatment


title: 309T miRNA

tag: gleason secondary

tag: gleason sum

tag: isup

tag: ln percent

tag: r residual_tumor


title: ACH0324 genomic DNA

description: ACH0324 genomic DNA


title: 305T miRNA

tag: cell type

tag: disease

tag: age


title: 32T miRNA

tag: risk group

tag: pt

tag: preop psa


title: ACH0323 genomic DNA

description: ACH0323 genomic DNA

tag: Sex

tag: tissue


title: 12A_M_1545

tag: brain region

tag: strain


title: 299T miRNA

tag: lapc

tag: gleason primary

tag: pn

tag: cm

tag: biochemical recurrence

tag: postop psa

tag: tmprss2 erg


title: 296T miRNA

tag: cell type

tag: gleason secondary

tag: gleason sum

tag: isup

tag: ln percent

tag: r residual_tumor

tag: treatment


title: 12A_M_1112

tag: age


title: ACH0322 genomic DNA

description: ACH0322 genomic DNA

tag: Sex

tag: tissue


title: 283T miRNA

tag: disease

tag: risk group

tag: lapc

tag: pt


title: 12A_M_1544

tag: brain region

tag: strain


title: 12A_M_1111


title: 281T miRNA

tag: gleason primary

tag: pn

tag: cm

tag: biochemical recurrence

tag: postop psa

tag: tmprss2 erg


title: ACH0321 genomic DNA

description: ACH0321 genomic DNA


title: 295T miRNA

tag: cell type

tag: gleason secondary

tag: gleason sum

tag: isup

tag: ln percent

tag: r residual_tumor

tag: preop psa


title: 279T miRNA

tag: tissue

tag: disease

tag: Sex

tag: age

tag: risk group

tag: lapc

tag: treatment


title: 12A_M_1543

tag: brain region

tag: strain


title: 272T miRNA

tag: gleason primary

tag: pt

tag: pn

tag: cm

tag: tmprss2 erg


title: ACH0320 genomic DNA

description: ACH0320 genomic DNA


title: 12A_M_1110


title: 277T miRNA

tag: cell type

tag: gleason secondary

tag: gleason sum

tag: isup

tag: ln percent

tag: biochemical recurrence

tag: postop psa


title: 27T miRNA

tag: tissue

tag: disease

tag: Sex

tag: age

tag: risk group

tag: r residual_tumor

tag: preop psa


title: ACH0319 genomic DNA

description: ACH0319 genomic DNA


title: 240T miRNA

tag: lapc

tag: gleason primary

tag: pt

tag: pn

tag: treatment


title: ACH0318 genomic DNA

description: ACH0318 genomic DNA


title: 12A_M_1542

tag: brain region

tag: strain


title: 238T miRNA

tag: cell type

tag: gleason secondary

tag: gleason sum

tag: isup

tag: cm

tag: ln percent

tag: tmprss2 erg


title: 300T miRNA

tag: tissue

tag: disease

tag: Sex

tag: age

tag: risk group

tag: biochemical recurrence

tag: postop psa


title: 12A_M_111


title: ACH0317 genomic DNA

description: ACH0317 genomic DNA


title: 237T miRNA

tag: lapc

tag: gleason primary

tag: pt

tag: pn

tag: r residual_tumor

tag: treatment


title: 12A_M_1541

tag: brain region

tag: strain


title: 232T miRNA

tag: cell type

tag: gleason secondary

tag: gleason sum

tag: isup

tag: cm

tag: ln percent


title: ACH0316 genomic DNA

description: ACH0316 genomic DNA

tag: Sex

tag: tissue


title: 233T miRNA

tag: disease

tag: age

tag: risk group

tag: preop psa

tag: biochemical recurrence

tag: postop psa

tag: tmprss2 erg


title: 23T miRNA

tag: lapc

tag: gleason primary

tag: pt

tag: pn

tag: r residual_tumor

tag: treatment


title: 12A_M_1109

tag: brain region

tag: strain


title: 227T miRNA

tag: cell type

tag: Sex

tag: gleason secondary

tag: gleason sum

tag: isup

tag: cm

tag: ln percent


title: 224T miRNA

tag: tissue

tag: disease

tag: age

tag: risk group

tag: biochemical recurrence

tag: postop psa


title: 228T miRNA

tag: lapc

tag: gleason primary

tag: pt

tag: pn

tag: r residual_tumor

tag: tmprss2 erg


title: 223T miRNA

tag: cell type

tag: Sex

tag: gleason secondary

tag: treatment


title: ACH0314 genomic DNA

description: ACH0314 genomic DNA


title: 12A_M_1540

tag: brain region

tag: strain


title: ACH0313 genomic DNA

description: ACH0313 genomic DNA

tag: tissue


title: ACH0315 genomic DNA

description: ACH0315 genomic DNA


title: 221T miRNA

tag: disease

tag: age

tag: gleason sum

tag: isup

tag: cm

tag: ln percent

tag: preop psa


title: 212T miRNA

tag: risk group

tag: lapc

tag: gleason primary

tag: pt

tag: pn

tag: biochemical recurrence

tag: postop psa


title: ACH0312 genomic DNA

description: ACH0312 genomic DNA

tag: Sex


title: 12A_M_1539

tag: brain region

tag: strain


title: 203T miRNA

tag: tissue

tag: cell type

tag: disease

tag: gleason secondary

tag: r residual_tumor

tag: tmprss2 erg

tag: treatment


title: ACH0311 genomic DNA

description: ACH0311 genomic DNA


title: 206T miRNA

tag: age

tag: risk group

tag: gleason sum

tag: isup

tag: cm

tag: ln percent

tag: preop psa


title: 12A_M_1107


title: 12A_M_1538


title: 202T miRNA

tag: Sex

tag: lapc

tag: gleason primary

tag: pt

tag: pn

tag: biochemical recurrence

tag: postop psa


title: ACH0309 genomic DNA

description: ACH0309 genomic DNA

tag: tissue


title: 197T miRNA

tag: cell type

tag: disease

tag: gleason secondary

tag: r residual_tumor

tag: tmprss2 erg


title: 20T miRNA

tag: age

tag: risk group

tag: gleason sum

tag: isup

tag: treatment


title: 196T miRNA

tag: Sex

tag: lapc

tag: cm

tag: ln percent

tag: preop psa


title: ACH0308 genomic DNA

description: ACH0308 genomic DNA


title: 12A_M_1537

tag: brain region

tag: strain


title: 12A_M_1104


title: ACH0307 genomic DNA

description: ACH0307 genomic DNA

tag: tissue


title: 190T miRNA

tag: cell type

tag: disease

tag: gleason primary

tag: pt

tag: pn

tag: biochemical recurrence

tag: postop psa


title: 187T miRNA

tag: age

tag: risk group

tag: gleason secondary

tag: gleason sum

tag: isup

tag: r residual_tumor

tag: tmprss2 erg


title: 12A_M_1108

tag: brain region


title: 24T miRNA

tag: Sex

tag: lapc

tag: cm

tag: ln percent

tag: preop psa

tag: treatment


title: 183T miRNA

tag: tissue

tag: cell type

tag: disease

tag: gleason primary

tag: pt

tag: pn


title: 185T miRNA

tag: age

tag: risk group

tag: gleason secondary

tag: gleason sum

tag: biochemical recurrence

tag: postop psa


title: 12A_M_1536

tag: brain region

tag: strain


title: 220T miRNA

tag: Sex

tag: lapc

tag: isup

tag: cm

tag: ln percent

tag: r residual_tumor

tag: tmprss2 erg


title: 186T miRNA

tag: tissue

tag: cell type

tag: disease

tag: gleason primary

tag: pt

value: Nx

tag: treatment


title: ACH0305 genomic DNA

description: ACH0305 genomic DNA


title: 182T miRNA

tag: age

tag: risk group

tag: gleason secondary

tag: gleason sum

tag: pn

tag: preop psa

tag: biochemical recurrence


title: 181T miRNA

tag: Sex

tag: lapc

tag: isup

tag: cm


title: 179T miRNA

tag: tissue

tag: ln percent

tag: r residual_tumor

tag: postop psa

tag: tmprss2 erg


title: 12A_M_1102

tag: brain region

tag: strain


title: ACH0303 genomic DNA

description: ACH0303 genomic DNA

value: Male


title: 177T miRNA

tag: cell type

tag: disease

tag: age

tag: risk group

tag: gleason primary

tag: pt

tag: treatment


title: 12A_M_1535


title: ACH0302 genomic DNA

description: ACH0302 genomic DNA

tag: Sex


title: 172T miRNA

tag: lapc

tag: gleason secondary

tag: gleason sum

tag: isup

tag: pn

tag: preop psa

tag: biochemical recurrence


title: 170T miRNA

tag: tissue

tag: cm

tag: ln percent

tag: r residual_tumor

tag: postop psa

tag: tmprss2 erg


title: ACH0301 genomic DNA

description: ACH0301 genomic DNA


title: 17T miRNA

tag: cell type

tag: disease

tag: age

tag: risk group

tag: gleason primary


title: 153T miRNA

tag: Sex

tag: lapc

tag: gleason secondary

tag: pt

tag: treatment


title: 12A_M_1534

tag: brain region

tag: strain


title: 15T miRNA

tag: tissue

tag: gleason sum

tag: isup

tag: pn

tag: cm

tag: preop psa

tag: biochemical recurrence


title: ACH0298 genomic DNA

description: ACH0298 genomic DNA


title: ACH0299 genomic DNA

description: ACH0299 genomic DNA


title: 12A_M_1100

tag: age


title: ACH0306 genomic DNA

description: ACH0306 genomic DNA


title: 12A_M_1103


title: ACH0297 genomic DNA

description: ACH0297 genomic DNA


title: 140T miRNA

tag: cell type

tag: disease

tag: risk group

tag: ln percent

tag: r residual_tumor

tag: postop psa

tag: tmprss2 erg


title: 138T miRNA

tag: Sex

tag: lapc

tag: gleason primary

tag: gleason secondary

tag: pt

tag: treatment


title: 12A_M_1533

tag: brain region

tag: strain


title: ACH0296 genomic DNA

description: ACH0296 genomic DNA

tag: tissue


title: 12A_M_110

tag: age


title: 12T miRNA

tag: cell type

tag: gleason sum

tag: isup

tag: pn

tag: cm

tag: preop psa

tag: biochemical recurrence


title: 12A_M_1099


title: 124T miRNA

tag: disease

tag: Sex

tag: risk group

tag: ln percent

tag: r residual_tumor

tag: tmprss2 erg


title: ACH0295 genomic DNA

description: ACH0295 genomic DNA


title: 119T miRNA

tag: lapc

tag: gleason primary

tag: gleason secondary

tag: pt

tag: postop psa

tag: treatment


title: 12A_M_1532

tag: brain region

tag: age

tag: strain


title: ACH0294 genomic DNA

description: ACH0294 genomic DNA

tag: tissue


title: 117T miRNA

tag: cell type

tag: gleason sum

tag: isup

tag: pn

tag: cm

tag: biochemical recurrence


title: 114T miRNA

tag: disease

tag: Sex

tag: risk group

tag: ln percent

tag: r residual_tumor

tag: preop psa

tag: tmprss2 erg


title: 12A_M_1097

tag: brain region


title: 12A_M_1101

tag: age


title: 111T miRNA

tag: lapc

tag: gleason primary

tag: gleason secondary

tag: pt

tag: postop psa

tag: treatment


title: ACH0293 genomic DNA

description: ACH0293 genomic DNA

tag: tissue


title: 109T miRNA

tag: cell type

tag: gleason sum

tag: isup

tag: pn

tag: cm

tag: biochemical recurrence


title: 150T miRNA

tag: disease

tag: Sex

tag: risk group

tag: ln percent

tag: r residual_tumor


title: 12A_M_1531

tag: brain region

tag: age

tag: strain


title: 144T miRNA

tag: lapc

tag: gleason primary

tag: gleason secondary

tag: pt

tag: preop psa

tag: postop psa

tag: tmprss2 erg


title: ACH0291 genomic DNA

description: ACH0291 genomic DNA

tag: tissue


title: 12A_M_1096


title: 108T miRNA

tag: cell type

tag: gleason sum

tag: isup

tag: pn

tag: cm

tag: treatment


title: 104T miRNA

tag: disease

tag: Sex

tag: risk group

tag: ln percent

tag: r residual_tumor


title: 102T miRNA

tag: age

tag: lapc

tag: gleason primary

tag: gleason secondary

tag: biochemical recurrence


title: ACH0290 genomic DNA

description: ACH0290 genomic DNA

tag: tissue


title: ACH0289 genomic DNA

description: ACH0289 genomic DNA


title: 143T miRNA

tag: cell type

tag: pt

tag: preop psa

tag: postop psa

tag: tmprss2 erg


title: 10T miRNA

tag: gleason sum

tag: isup

tag: pn

tag: cm

tag: treatment


title: 12A_M_1095

tag: brain region

tag: strain


title: 1T miRNA

tag: disease

tag: Sex

tag: age

tag: risk group

tag: lapc

tag: ln percent

tag: r residual_tumor


title: U98T RNA

tag: tissue

tag: cell type

value: intermediate

value: lpc

tag: gleason primary

tag: gleason secondary

tag: pt

tag: preop psa

tag: biochemical recurrence


title: ACH0288 genomic DNA

description: ACH0288 genomic DNA


title: U97T RNA

tag: gleason sum

tag: isup

tag: pn

tag: cm

tag: tmprss2 erg

tag: treatment


title: 12A_M_1093

tag: brain region

tag: age

tag: strain


title: 118T miRNA

tag: disease

tag: Sex

tag: risk group

tag: lapc

tag: ln percent

tag: r residual_tumor

tag: postop psa


title: ACH0287 genomic DNA

description: ACH0287 genomic DNA

tag: tissue


title: U7T RNA

tag: cell type

tag: gleason primary

tag: gleason secondary

tag: gleason sum

tag: pt

tag: preop psa

tag: biochemical recurrence


title: U69T RNA

tag: age

tag: isup

tag: pn

tag: cm

tag: tmprss2 erg

tag: treatment


title: U74T RNA

tag: disease

tag: Sex

tag: risk group

tag: lapc

tag: ln percent


title: ACH0286 genomic DNA

description: ACH0286 genomic DNA

tag: tissue


title: U68T RNA

tag: cell type

tag: gleason primary

tag: gleason secondary

tag: r residual_tumor

tag: postop psa


title: 12A_M_1091

tag: brain region

tag: age

tag: strain


title: U60T RNA

tag: gleason sum

tag: isup

tag: pt

tag: pn

tag: cm

tag: preop psa

tag: biochemical recurrence


title: U55T RNA

tag: disease

tag: Sex

tag: risk group

tag: lapc

tag: ln percent

tag: tmprss2 erg

tag: treatment


title: ACH0285 genomic DNA

description: ACH0285 genomic DNA

tag: tissue


title: U43T RNA

tag: cell type

tag: age

tag: gleason primary

tag: gleason secondary

tag: r residual_tumor


title: 12A_M_109

tag: brain region

tag: strain


title: ACH0284 genomic DNA

description: ACH0284 genomic DNA


title: ACH0282 genomic DNA

description: ACH0282 genomic DNA


title: U31T RNA

tag: gleason sum

tag: isup

tag: pt

tag: pn

tag: cm

tag: preop psa

tag: postop psa


title: U9T RNA

tag: disease

tag: Sex

tag: risk group

tag: lapc

tag: ln percent

tag: tmprss2 erg


title: 12A_M_1089

tag: age


title: U24T RNA

tag: tissue

tag: cell type

tag: gleason primary

tag: gleason secondary

tag: r residual_tumor

tag: biochemical recurrence

tag: treatment


title: 12A_M_1088

tag: brain region

tag: strain


title: ACH0281 genomic DNA

description: ACH0281 genomic DNA


title: U23T RNA

tag: gleason sum

tag: isup

tag: pt

tag: pn

tag: cm

tag: preop psa

tag: postop psa


title: 12A_M_1094

tag: age


title: U1T RNA

tag: tissue

tag: disease

tag: Sex

tag: risk group

tag: lapc

tag: ln percent

tag: tmprss2 erg


title: ACH0280 genomic DNA

description: ACH0280 genomic DNA


title: U3T RNA

tag: cell type

tag: gleason primary

tag: gleason secondary

tag: r residual_tumor

tag: biochemical recurrence

tag: treatment


title: U16T RNA

tag: gleason sum

tag: isup

tag: pt

tag: pn

tag: cm


title: U118T RNA

tag: tissue

tag: disease

tag: age

tag: preop psa

tag: postop psa


title: 12A_M_1086

tag: brain region

tag: strain


title: ACH0279 genomic DNA

description: ACH0279 genomic DNA

tag: Sex


title: 12A_M_1092


title: 12A_M_1085


title: U112T RNA

tag: cell type

tag: risk group

tag: lapc

tag: gleason primary

tag: gleason secondary

tag: ln percent

tag: tmprss2 erg


title: ACH0278 genomic DNA

description: ACH0278 genomic DNA


title: 12A_M_1082


title: U106T RNA

tag: gleason sum

tag: isup

tag: pt

tag: pn

tag: r residual_tumor

tag: biochemical recurrence

tag: treatment


title: U105T RNA

tag: tissue

tag: disease

tag: age

tag: cm

tag: preop psa

tag: postop psa


title: ACH0277 genomic DNA

description: ACH0277 genomic DNA

tag: Sex


title: 99T RNA

tag: cell type

tag: risk group

tag: lapc

tag: gleason primary

tag: gleason secondary


title: 98T RNA

tag: gleason sum

tag: isup

tag: pt

tag: ln percent

tag: tmprss2 erg


title: 12A_M_108

tag: brain region

tag: strain


title: ACH0276 genomic DNA

description: ACH0276 genomic DNA

tag: tissue


title: 95T RNA

tag: disease

tag: age

tag: pn

tag: cm

tag: r residual_tumor

tag: biochemical recurrence

tag: treatment


title: 12A_M_1079


title: 12A_M_1087


title: ACH0274 genomic DNA

description: ACH0274 genomic DNA

tag: Sex


title: U27T RNA

tag: cell type

tag: risk group

tag: lapc

tag: gleason primary

tag: gleason secondary

tag: preop psa

tag: postop psa


title: 89T RNA

tag: gleason sum

tag: isup

tag: pt

tag: ln percent

tag: tmprss2 erg


title: 90T RNA

tag: tissue

tag: disease

tag: pn

tag: cm


title: 12A_M_1078

tag: brain region

tag: age

tag: strain


title: 95N miRNA

source_name: normal prostate tissue

value: normal prostate tissue

tag: cell type

tag: Sex

tag: risk group

tag: lapc

tag: r residual_tumor

tag: biochemical recurrence

tag: treatment


title: 88N miRNA

tag: gleason primary

tag: gleason secondary

tag: gleason sum

tag: isup

tag: pt

tag: preop psa


title: ACH0273 genomic DNA

description: ACH0273 genomic DNA

value: Female

tag: tissue


title: U113T RNA

tag: disease

tag: pn

tag: cm

tag: ln percent

tag: postop psa

tag: tmprss2 erg


title: 86T RNA

tag: cell type

tag: Sex

tag: age

tag: risk group

tag: lapc


title: 12A_M_1077

source_name: C57BL/6J Male P56 Mouse Brain

tag: brain region

tag: strain


title: 12A_M_1075


title: ACH0270 genomic DNA

description: ACH0270 genomic DNA

value: whole blood


title: 85N miRNA

tag: gleason primary

tag: gleason secondary

tag: gleason sum

tag: isup

tag: r residual_tumor

tag: biochemical recurrence

tag: treatment


title: 12A_M_1074


title: ACH0275 genomic DNA

description: ACH0275 genomic DNA

tag: tissue


title: 84T RNA

value: primary tumor

tag: disease

tag: pt

tag: pn

tag: cm

tag: preop psa

tag: postop psa


title: ACH0269 genomic DNA

description: ACH0269 genomic DNA

tag: Sex


title: 82T RNA

tag: cell type

value: prostate cancer

tag: age

tag: risk group

tag: lapc

tag: ln percent

tag: tmprss2 erg


title: 12A_M_1073

tag: brain region

tag: strain


title: 80T RNA

value: male

tag: gleason primary

tag: gleason secondary

tag: gleason sum

tag: isup

tag: r residual_tumor

tag: biochemical recurrence

tag: treatment


title: 88T RNA

tag: tissue

tag: disease

value: high

tag: pt

tag: pn

tag: cm

tag: preop psa


title: 80N miRNA

tag: cell type

tag: Sex

tag: age

tag: risk group

tag: lapc

value: lapc

tag: ln percent

tag: postop psa


title: ACH0267 genomic DNA

description: ACH0267 genomic DNA


title: 12A_M_1072

tag: brain region

tag: strain


title: 79T RNA

tag: gleason primary

tag: gleason secondary

tag: gleason sum

tag: isup

tag: r residual_tumor

tag: biochemical recurrence

tag: tmprss2 erg


title: 78T RNA

tag: tissue

tag: disease

tag: pt

tag: pn

tag: cm

tag: preop psa

tag: treatment


title: ACH0266 genomic DNA

description: ACH0266 genomic DNA

tag: Sex


title: 74T RNA

tag: cell type

tag: age

tag: risk group

tag: lapc

tag: ln percent

tag: postop psa

value: NO


title: 74N miRNA

tag: gleason primary

tag: gleason secondary

tag: gleason sum

tag: isup

tag: r residual_tumor

value: brf


title: 12A_M_1070

tag: brain region

tag: strain


title: 71T RNA

tag: tissue

tag: disease

tag: pt

tag: pn

tag: cm

tag: biochemical recurrence

tag: tmprss2 erg


title: 12A_M_1069

tag: age


title: 70T RNA

tag: cell type

tag: Sex

tag: risk group

tag: lapc

tag: ln percent

tag: preop psa

value: YES

tag: treatment


title: 85T RNA

tag: gleason primary

tag: gleason secondary

tag: gleason sum

tag: isup

tag: r residual_tumor

tag: postop psa


title: 12A_M_1068

tag: brain region

tag: strain


title: ACH0265 genomic DNA

description: ACH0265 genomic DNA

tag: tissue


title: 12A_M_1067

tag: age


title: 6T RNA

tag: cell type

tag: disease

tag: pt

tag: pn

tag: cm

tag: biochemical recurrence

tag: tmprss2 erg


title: ACH0262 genomic DNA

description: ACH0262 genomic DNA

tag: Sex


title: 70N miRNA

tag: risk group

tag: lapc

tag: gleason primary

tag: gleason secondary

tag: ln percent

tag: preop psa

tag: treatment


title: 6N miRNA

tag: tissue

tag: gleason sum

tag: isup

tag: r residual_tumor

tag: postop psa


title: ACH0268 genomic DNA

description: ACH0268 genomic DNA


title: 69T RNA

tag: cell type

tag: disease

tag: age

tag: pt

tag: pn


title: 12A_M_1066

tag: brain region

tag: strain


title: ACH0261 genomic DNA

description: ACH0261 genomic DNA

tag: Sex


title: 68T RNA

tag: risk group

tag: lapc

tag: gleason primary

tag: gleason secondary

tag: cm

tag: tmprss2 erg


title: 12A_M_1065


title: 5T RNA2

tag: tissue

tag: gleason sum

tag: isup

tag: ln percent

tag: preop psa

tag: biochemical recurrence

tag: treatment


title: ACH0260 genomic DNA

description: ACH0260 genomic DNA


title: ACH0258 genomic DNA

description: ACH0258 genomic DNA


title: 12A_M_1063

tag: age


title: 5T RNA

tag: cell type

tag: disease

tag: pt

tag: pn

tag: r residual_tumor

tag: postop psa


title: 12A_M_1064

tag: brain region

tag: strain


title: 12A_M_1062


title: 59T RNA

tag: Sex

tag: risk group

tag: lapc

tag: gleason primary

tag: gleason secondary

tag: cm

value: bcr

tag: tmprss2 erg


title: 54T RNA

tag: tissue

tag: gleason sum

tag: isup

tag: ln percent

tag: preop psa

tag: biochemical recurrence

tag: treatment


title: 58T RNA

tag: cell type

tag: disease

tag: age

tag: pt

tag: pn

tag: r residual_tumor

tag: postop psa


title: 59N miRNA

tag: Sex

tag: risk group

tag: lapc

tag: gleason primary

tag: gleason secondary


title: ACH0256 genomic DNA

description: ACH0256 genomic DNA

tag: tissue


title: 55T RNA

tag: gleason sum

tag: isup

tag: cm

tag: ln percent

tag: tmprss2 erg


title: 12A_M_1061

tag: brain region

tag: strain


title: 54T RNA2

tag: cell type

tag: disease

tag: age

tag: pt

tag: preop psa

tag: biochemical recurrence

tag: treatment


title: 54N miRNA

tag: Sex

tag: risk group

tag: lapc

tag: gleason primary

tag: pn

tag: r residual_tumor

tag: postop psa


title: 51T RNA

tag: tissue

tag: gleason secondary

tag: gleason sum

tag: isup

tag: cm

tag: ln percent

tag: tmprss2 erg


title: ACH0255 genomic DNA

description: ACH0255 genomic DNA


title: 50T RNA

tag: cell type

tag: disease

tag: age

tag: pt

tag: preop psa


title: 12A_M_1060

tag: brain region

tag: strain


title: ACH0264 genomic DNA

description: ACH0264 genomic DNA

tag: Sex


title: ACH0254 genomic DNA

description: ACH0254 genomic DNA


title: 50N miRNA

tag: risk group

tag: lapc

tag: gleason primary

tag: pn

tag: r residual_tumor

tag: treatment


title: 63T RNA

tag: tissue

tag: gleason secondary

tag: gleason sum

tag: isup

tag: cm

tag: biochemical recurrence

tag: postop psa


title: 12A_M_106

tag: age


title: 4T RNA

tag: cell type

tag: disease

tag: pt

tag: ln percent

tag: preop psa

tag: tmprss2 erg


title: 49T RNA

tag: Sex

tag: risk group

tag: lapc

tag: gleason primary

tag: pn


title: 12A_M_1059

tag: brain region

tag: strain


title: ACH0257 genomic DNA

description: ACH0257 genomic DNA

tag: tissue


title: 49N miRNA

tag: gleason secondary

tag: gleason sum

tag: isup

tag: cm

tag: r residual_tumor

tag: treatment


title: ACH0252 genomic DNA

description: ACH0252 genomic DNA


title: 12A_M_1057

tag: age


title: 43T RNA

tag: cell type

tag: disease

tag: pt

tag: ln percent

tag: preop psa

tag: biochemical recurrence

tag: postop psa


title: 44T RNA

tag: Sex

tag: risk group

value: low

tag: lapc

tag: gleason primary

tag: pn

tag: tmprss2 erg


title: 41N miRNA

tag: tissue

tag: gleason secondary

tag: gleason sum

tag: isup

tag: cm

value: Rx


title: ACH0251 genomic DNA

description: ACH0251 genomic DNA

value: Male


title: 41T RNA

tag: cell type

tag: disease

tag: age

tag: r residual_tumor

tag: treatment


title: 39T RNA

tag: pt

tag: ln percent

tag: preop psa


title: 12A_M_1056

tag: brain region

tag: strain


title: ACH0250 genomic DNA

description: ACH0250 genomic DNA

tag: Sex


title: 12A_M_1055


title: ACH0247 genomic DNA

description: ACH0247 genomic DNA


title: 38T RNA

tag: risk group

tag: lapc

tag: gleason primary

tag: pn

tag: biochemical recurrence

tag: postop psa

tag: tmprss2 erg


title: 40T RNA

tag: tissue

tag: cell type

tag: disease

value: intermediate

tag: gleason secondary

tag: gleason sum

tag: isup

tag: cm


title: 32T RNA

tag: age

tag: pt

tag: ln percent

tag: r residual_tumor

tag: preop psa

tag: treatment


title: ACH0248 genomic DNA

description: ACH0248 genomic DNA

tag: Sex


title: 12A_M_1054

tag: brain region

tag: strain


title: 314T RNA

tag: risk group

tag: lapc

tag: gleason primary

tag: pn

tag: biochemical recurrence

tag: postop psa

tag: tmprss2 erg


title: ACH0253 genomic DNA

description: ACH0253 genomic DNA

tag: tissue


title: 12A_M_1052

tag: age


title: 311T RNA

tag: cell type

tag: disease

value: lpc

tag: gleason secondary

tag: gleason sum

tag: isup

tag: pt

tag: cm


title: 12A_M_1053

tag: brain region

tag: strain


title: ACH0246 genomic DNA

description: ACH0246 genomic DNA

tag: Sex


title: 312T RNA

tag: risk group

tag: lapc

tag: gleason primary

tag: ln percent

tag: r residual_tumor

tag: preop psa

tag: treatment


title: 309T RNA

tag: tissue

tag: cell type

tag: age

tag: pn

tag: biochemical recurrence

tag: postop psa

tag: tmprss2 erg


title: 305T RNA

tag: disease

tag: gleason secondary

tag: gleason sum

tag: isup

tag: pt

tag: cm


title: ACH0249 genomic DNA

description: ACH0249 genomic DNA

tag: Sex


title: 12A_M_1050

tag: brain region

tag: strain


title: ACH0245 genomic DNA

description: ACH0245 genomic DNA


title: 304T RNA

tag: risk group

tag: lapc

tag: gleason primary

tag: ln percent

tag: r residual_tumor

tag: treatment


title: 303T RNA

tag: tissue

tag: cell type

tag: age

tag: pn

tag: preop psa

tag: biochemical recurrence

tag: postop psa


title: 302T RNA

tag: disease

tag: gleason secondary

tag: gleason sum

tag: isup

tag: pt

tag: cm

tag: tmprss2 erg


title: 35T RNA

tag: Sex

tag: risk group

tag: lapc

tag: gleason primary

tag: ln percent


title: 12A_M_105

tag: brain region

tag: age

tag: strain


title: 300T RNA

tag: tissue

tag: cell type

tag: pn

tag: r residual_tumor

tag: preop psa

tag: biochemical recurrence

tag: treatment


title: ACH0243 genomic DNA

description: ACH0243 genomic DNA


title: 12A_M_1049


title: ACH0241 genomic DNA

description: ACH0241 genomic DNA


title: ACH0240 genomic DNA

description: ACH0240 genomic DNA