title: BrainCell_Enhancer-eHGT_082h_MouseID-473545_Cell-15


title: BrainCell_Enhancer-eHGT_082h_MouseID-473545_Cell-14

status: Public on Jun 27 2023

type: SRA

city: Seattle

first: John

middle: Kenneth

last: Mich

state: WA

address: 615 Westlake Ave N

country: USA

institute: Allen Institute for Brain Science

library_source: transcriptomic single cell

data_processing:
Base-calling using standard Illumina software.
Alignment with STAR (https://github.com/alexdobin/STAR)
Transformed by counts per million.
Assembly: mm10
Supplementary files format and content: Processed data in counts per million (CPM) format.

molecule: polyA RNA

organism: Mus musculus

source_name: VISp

extract_protocol:
Single SYFP2-expressing cells from mouse brain were flow sorted into individual tubes in SMARTerv4 collection buffer.
SMARTerv4

tag: tissue

value: VISp

tag: genotype

tag: treatment


title: BrainCell_Enhancer-eHGT_082h_MouseID-473545_Cell-6


title: BrainCell_Enhancer-eHGT_082h_MouseID-473545_Cell-7


title: BrainCell_Enhancer-eHGT_082h_MouseID-473545_Cell-5


title: BrainCell_Enhancer-eHGT_082h_MouseID-473545_Cell-4


title: BrainCell_Enhancer-eHGT_082h_MouseID-473545_Cell-3


title: BrainCell_Enhancer-eHGT_082h_MouseID-473545_Cell-1


title: BrainCell_Enhancer-eHGT_082h_MouseID-473545_Cell-2


title: BrainCell_Enhancer-eHGT_082h_MouseID-473545_Cell-18


title: BrainCell_Enhancer-eHGT_082h_MouseID-473545_Cell-9


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-48


title: BrainCell_Enhancer-eHGT_082h_MouseID-473545_Cell-13


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-44


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-45


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-47


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-46


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-43


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-42


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-41


title: BrainCell_Enhancer-eHGT_082h_MouseID-473545_Cell-16


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-40


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-39


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-38


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-37


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-33


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-35


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-31


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-32


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-29


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-28


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-27


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-26


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-24


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-25


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-21


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-20


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-22


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-19


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-18


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-16


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-15


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-34


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-30


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-17


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-36


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-12


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-14


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-13


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-10


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-8


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-9


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-11


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-7


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-5


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-6


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-3


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-1


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-2


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-45


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-46


title: BrainCell_Enhancer-eHGT_079h_MouseID-505189_Cell-23


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-43


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-44


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-42


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-41


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-40


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-35


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-33


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-31


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-29


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-39


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-38


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-36


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-30


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-26


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title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-32


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-25


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-23


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-21


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-24


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-20


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-19


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-18


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-17


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-16


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-37


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-14


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-34


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-28


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title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-15


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-27


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-13


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-7


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-11


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-5


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-2


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-3


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-22


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-4


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-6


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-10


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-9


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-46


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-1


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-43


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-45


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-47


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-40


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-41


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-38


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-39


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-37


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-35


title: BrainCell_Enhancer-eHGT_079h_MouseID-475241_Cell-8


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-34


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-33


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-32


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-31


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-30


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-29


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-27


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-22


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-28


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title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-23


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-21


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-44


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title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-3


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title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-43


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-1


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title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-45


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title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-41


title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-40


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title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-35


title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-31


title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-33


title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-34


title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-36


title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-29


title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-32


title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-30


title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-28


title: BrainCell_Enhancer-eHGT_079h_MouseID-473544_Cell-6


title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-27


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title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-25


title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-24


title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-23


title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-21


title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-18


title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-19


title: BrainCell_Enhancer-eHGT_064h_MouseID-498750_Cell-22


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title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-42


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-40


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-26


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title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-20


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-17


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-21


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-32


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-19


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title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-22


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-39


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-31


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-36


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-18


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-34


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-23


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-37


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-35


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-29


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-30


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-24


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-25


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-27


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-16


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-15


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-13


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-14


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-10


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-12


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-11


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title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-8


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-9


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-5


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-3


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-45


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-42


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-2


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-36


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-47


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-41


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-40


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-1


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-44


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-46


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-37


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-38


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-28


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-39


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-35


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-34


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-32


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-33


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-31


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-30


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-28


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-4


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-29


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-27


title: BrainCell_Enhancer-eHGT_064h_MouseID-492045_Cell-6


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-26


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-43


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-25


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-23


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-24


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-19


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-16


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-18


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-21


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-15


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-17


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-20


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-14


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-8


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-9


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-11


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-13


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-10


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-12


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-7


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-5


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-6


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-4


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-3


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-1


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-42


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-41


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-43


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-22


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-40


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-38


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-39


title: BrainCell_Enhancer-eHGT_064h_MouseID-468100_Cell-2


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-36


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-34


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-26


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-27


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-32


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-35


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-33


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-31


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-21


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-23


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-29


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-25


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-20


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-30


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-24


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-18


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-16


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-15


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-22


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-17


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-19


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-14


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-12


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-37


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-13


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-11


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-10


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-9


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-28


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-8


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-7


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-6


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-5


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-3


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-4


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-2


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-47


title: BrainCell_Enhancer-eHGT_023h_MouseID-498748_Cell-1


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-48


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-45


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-43


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-42


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-41


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-37


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-35


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-39


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-34


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-36


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-46


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-47


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-33


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-45


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-42


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-43


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-44


title: Stylophora pistillata, control, colony 2, sample 3

city: Boston

first: Yao

last: Li

state: MA

address: 1 Jimmy Fund Way, SM512

institute: Dana-Farber Cancer Institute

description: Control-2C in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf

library_source: transcriptomic

data_processing:
Sequencing reads were aligned to GCA_002571385.1 using STAR (Dobin et al., 2013), and reads mapped to genes were summarized using featureCounts (Liao et al., 2014). The NCBI S. pistillata gene annotation (GCA_002571385.1) was used with added gene models from the previous annotation (http://spis.reefgenomics.org/)(Voolstra et al., 2015; Voolstra et al., 2017) not overlapping with NCBI genes. After assessing sample correlations and separation in principal component analysis (PCA), we removed two outlier samples (Control-1A and 3′3′- cUA-2A) that also have lower TPM distributions from downstream analysis. Differentially expressed genes between each treatment and the control samples were identified using DESeq2 (Love et al., 2014) (absolute log2 fold change > 1 and adjusted p value < 0.05).
Assembly: GCA_002571385.1
Supplementary files format and content: TSV file containing gene counts of each library

molecule: total RNA

organism: Stylophora pistillata

source_name: Adult colony

extract_protocol:
Invitrogen PureLink® RNA Mini Kit (including on-column DNase treatment)
RNA sequencing libraries were prepared using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina following manufacturer’s instructions (NEB, Ipswich, MA, USA). Briefly, mRNAs were first enriched with Oligo(dT) beads. Enriched mRNAs were fragmented for 15 minutes at 94 °C. First strand and second strand cDNAs were subsequently synthesized. cDNA fragments were end repaired and adenylated at 3’ends, and universal adapters were ligated to cDNA fragments, followed by index addition and library enrichment by limited-cycle PCR. The sequencing libraries were validated on the Agilent TapeStation (Agilent Technologies, Palo Alto, CA, USA), and quantified by using Qubit 2.0 Fluorometer (Invitrogen, Carlsbad, CA) as well as by quantitative PCR (KAPA Biosystems, Wilmington, MA, USA).

value: Adult colony

value: wild type

value: control


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-44


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-40


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-46


title: Stylophora pistillata, control, colony 2, sample 1

description: Control-2A in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-39


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-41


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-37


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-36


title: Stylophora pistillata, control, colony 1, sample 2

description: Control-1B in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-40


title: Stylophora pistillata, control, colony 1, sample 3

description: Control-1C in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf


title: Stylophora pistillata, 2'3'-cGAMP, colony 2, sample 3

description: cGAMP-2C in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-38


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-35


title: Stylophora pistillata, 2'3'-cGAMP, colony 2, sample 1

description: cGAMP-2A in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-34


title: Stylophora pistillata, 2'3'-cGAMP, colony 1, sample 3

description: cGAMP-1C in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf


title: Stylophora pistillata, 3'3'-cUA, colony 2, sample 3

description: cApUp-2C in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-31


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-33


title: Stylophora pistillata, control, colony 2, sample 2

description: Control-2B in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-30


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-29


title: Stylophora pistillata, 2'3'-cGAMP, colony 1, sample 1

description: cGAMP-1A in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf


title: Stylophora pistillata, 2'3'-cGAMP, colony 1, sample 2

description: cGAMP-1B in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf


title: Stylophora pistillata, 3'3'-cUA, colony 2, sample 1

description: cApUp-2A in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-28


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-27


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-32


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-26


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-38


title: Stylophora pistillata, control, colony 1, sample 1

description: Control-1A in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-31


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-32


title: Stylophora pistillata, 3'3'-cUA, colony 1, sample 3

description: cApUp-1C in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf


title: C. virginica, control, 12h, rep 4

description: Labeled as SC12_4 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta

data_processing:
Sequencing reads were aligned to Crassostrea virginica C_virginica-3.0 reference genome (https://www.ncbi.nlm.nih.gov/assembly/GCF_002022765.2/) using HISAT2 (Kim et al., 2019), and reads mapped to genes were summarized using featureCounts (Liao et al., 2014) by Novogene. Differentially expressed genes between each treatment and the control samples were next identified using DESeq2 (Love et al., 2014) (absolute log2 fold change > 1 and adjusted p value < 0.05).
Assembly: Crassostrea virginica C_virginica-3.0 reference genome (https://www.ncbi.nlm.nih.gov/assembly/GCF_002022765.2/)
Supplementary files format and content: TSV file containing gene counts of each library

organism: Crassostrea virginica

source_name: Gill tissue

extract_protocol:
Gill tissues were preserved in RNAlater and total RNA extraction was performed by Novogene
Messenger RNA was purified from total RNA using poly-T oligo-attached magnetic beads. After fragmentation, the first strand cDNA was synthesized using random hexamer primers, followed by the second strand cDNA synthesis using either dUTP for directional library.

value: Gill tissue


title: Stylophora pistillata, 3'3'-cUA, colony 1, sample 1

description: cApUp-1A in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf


title: C. virginica, control, 12h, rep 3

description: Labeled as SC12_3 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: C. virginica, control, 12h, rep 2

description: Labeled as SC12_2 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-30


title: Stylophora pistillata, 3'3'-cUA, colony 2, sample 2

description: cApUp-2B in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf


title: C. virginica, control, 12h, rep 1

description: Labeled as SC12_1 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-29


title: Stylophora pistillata, 3'3'-cUA, colony 1, sample 2

description: cApUp-1B in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-27


title: C. virginica, control, 6h, rep 4

description: Labeled as SC6_4 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-26


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-25


title: C. virginica, control, 6h, rep 2

description: Labeled as SC6_2 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-28


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-25


title: C. virginica, control, 6h, rep 1

description: Labeled as SC6_1 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: C. virginica, control, 6h, rep 3

description: Labeled as SC6_3 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-24


title: C. virginica, 2'3'-cUA, 12h, rep 2

description: Labeled as UA12_2 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: C. virginica, 2'3'-cUA, 12h, rep 4

description: Labeled as UA12_4 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: C. virginica, 2'3'-cUA, 12h, rep 3

description: Labeled as UA12_3 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: C. virginica, 2'3'-cUA, 12h, rep 1

description: Labeled as UA12_1 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-21


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-22


title: C. virginica, 2'3'-cUA, 6h, rep 4

description: Labeled as UA6_4 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: C. virginica, 2'3'-cUA, 6h, rep 3

description: Labeled as UA6_3 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-18


title: C. virginica, 2'3'-cUA, 6h, rep 1

description: Labeled as UA6_1 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-20


title: C. virginica, 2'3'-cGAMP, 12h, rep 4

description: Labeled as GA12_4 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-19


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-16


title: C. virginica, 2'3'-cGAMP, 12h, rep 3

description: Labeled as GA12_3 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-23


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-15


title: C. virginica, 2'3'-cGAMP, 6h, rep 3

description: Labeled as GA6_3 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: C. virginica, 2'3'-cGAMP, 12h, rep 2

description: Labeled as GA12_2 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: C. virginica, 2'3'-cGAMP, 6h, rep 4

description: Labeled as GA6_4 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-13


title: C. virginica, 2'3'-cGAMP, 12h, rep 1

description: Labeled as GA12_1 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-12


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-14


title: C. virginica, 2'3'-cUA, 6h, rep 2

description: Labeled as UA6_2 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: C. virginica, 2'3'-cGAMP, 6h, rep 2

description: Labeled as GA6_2 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-17


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-9


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-10


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-8


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-11


title: C. virginica, 2'3'-cGAMP, 6h, rep 1

description: Labeled as GA6_1 in processed data file, gene annotation listed in C_virginica_gene_annotation.xls, gene sequence listed in C_virginica_gene_sequence.fasta


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-6


title: PA4

city: Münster

first: Carolin

last: Walter

address: Domagkstraße 9

department: Medical Faculty of the WWU Münster

country: Germany

data_processing:
Demultiplexing and preprocessing of the scRNA data was conducted with CellRanger v3.0.2.
After converting the raw 10X data to fastq format with CellRanger's mkfastq, the data was aligned against the human reference transcriptome GRCh38 with the CellRanger count function using default values.
Assembly: GRCh38
Supplementary files format and content: Tab-separated values files and matrix files

organism: Homo sapiens

source_name: tumor

extract_protocol:
Fresh tumor material from pLGG biopsies was minced with scalpels on ice and then subjected to enzymatic dissociation, using a freshly prepared papain solution (PAP2 Papain Dissociation System; CellSystems) in DMEM/F12 medium supplemented with 1000 U DNase I from bovine pancreas (Roche). After incubation at 37°C in 5% CO2, the solution was filtered using a 40 µm cell strainer, and red blood cells were lysed with ACK lysis buffer (Thermo Fisher Scientific) for 5 minutes on ice. The resulting single cell suspension was stained with 7-AAD Viability Staining Solution (Thermo Fisher Scientific), and non-viable, 7-AAD-positive cells were removed by fluorescence-activated cell sorting using a FACSAria II cell sorter (BD Biosiences).
Approximately 10,000 vital cells of each sample were processed for scRNA-seq using using 10x Genomics Chromium Next GEM Single Cell 3' Technology (v3.1 Chemistry; 10x Genomics) according to the manufacturer's instructions. Quality, purity, average size and concentration of copy DNAs and libraries were determined by measurements on a Tapestation 2200 (Agilent Technologies). Indexed libraries (Single Index Kit T) were sequenced using a NextSeq 2000 sequencing platform with P3 flow cell and reagents (Illumina).

value: tumor

tag: diagnosis

value: pilocytic astrocytoma

tag: tumor localisation

value: parieto-occipital

tag: patient age_at_diagnosis

tag: Sex

value: male

tag: mapk alteration

value: fusion

tag: resection status

value: complete


title: PA2

value: posterior fossa

value: incomplete


title: PA1

value: brain stem

value: female

value: BRAFV600e mutation


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-4


title: PA5

value: BRAFV600E mutation


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-3

value: VISp


title: PMA1

value: pilomyxoid astrocytoma

value: Hypothalamic region

value: biopsy


title: PA3

value: cerebellar

value: no fusion, no BRAFV600E mutation


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-5


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-2


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-24


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-23


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-22


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-21


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-19


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-1


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-20


title: BrainCell_Enhancer-eHGT_023h_MouseID-497549_Cell-7


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-18


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-15


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-13


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-12


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-11


title: GC-A fl/fl p38 fl/fl Nephrin-Cre(Cre/+) mice

type: RNA

city: Kyoto

first: Sayaka

last: Sugioka

address: 54, Syogoin Kawahara-cho, Sakyo-ku

department: Nephrology

country: Japan

institute: Kyoto University

hyb_protocol: Following fragmentation, 10ug of cRNA were hybridized for 16 hr at 45℃ on GeneChip Human Genome U133 Plus 2.0 Array. Arrays were washed and stained in the GeneChip Fluidics Station 450 (Thermo Fisher Scientific)

scan_protocol: Arrays were scanned using GeneChip Scanner 3000 7G.

data_processing: Single Array Analysis were calculated by Microarray Suite version 5.0 (MAS5.0) with Thermo Fisher Scientific default setting and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.

label: biotin

source_name: glomerulus

label_protocol: Biotinylated cRNA were synthesized by GeneChipTM 3' IVT PLUS Reagent Kit (Thermo Fisher Scientific) from 250ng total RNA according to the manufacturer's instructions. Biotinylated cRNA yield were checked with the NanoDrop ND-2000 Spectrophotometer.

growth_protocol: Glomeruli were isolated by the graded sieving methods.

extract_protocol: RNA was isolated from 600 µL of glomeruli with the RNeasy Mini Kit (Qiagen), according to the manufacturer’s instructions

value: kidney

tag: background


title: KRAB+Pfam naïve library sequencing

city: Stanford

first: Adi

middle: Xiyal

last: Mukund

state: CA

address: 443 via Ortega, Shriram 036

institute: Stanford University

library_source: genomic

data_processing:
Sequencing reads were demultiplexed using bcl2fastq (Illumina). A Bowtie reference was generated using the designed library sequences with the script ‘makeIndices.py’ and reads were aligned with 0 mismatch allowance using the script ‘makeCounts.py’.
The enrichments for each domain between OFF and ON (or FLAGhigh and FLAGlow) samples were computed using the script ‘makeRhos.py’. Domains with < 5 reads in both samples for a given replicate were dropped from that replicate (assigned 0 counts), whereas domains with < 5 reads in one sample would have those reads adjusted to 5 in order to avoid the inflation of enrichment values from low depth. For all of the nuclear domain screens, domains with ≤ 5 counts in both replicates of a given condition were filtered out of downstream analysis.
Assembly: hg38
Supplementary files format and content: CSV file describing library members and corresponding enrichments
Library strategy: Amplicon-seq

molecule: genomic DNA

growth_protocol: The nuclear Pfam library was cloned into the downstream GoldenGate cloning site, and used to produce lentivirus identically as in21. K562 cells were then spinfected in 2 separate replicates with this KRAB+nuclear Pfam library lentivirus at an average MOI of 0.015, corresponding to an infection coverage of 85x per replicate.

extract_protocol:
Genomic DNA was extracted with the QIAgen Blood Maxi Kit following the manufacturer’s instructions with up to 1.25 × 108 cells per column. DNA was eluted in EB and not AE to avoid subsequence PCR inhibition. The domain sequences were amplified by PCR with primers containing Illumina adapters as extensions (Table S3). A test PCR was performed using 5 μg of genomic DNA in a 50 μL (half-size) reaction to verify if the PCR conditions would result in a visible band at the expected size for each sample. Then, 12 - 24x 100 μL reactions were set up on ice (in a clean PCR hood to avoid amplifying contaminating DNA), with the number of reactions depending on the amount of genomic DNA available in each experiment. 10 μg of genomic DNA, 0.5 μL of each 100 μM primer, and 50 μL of NEBnext 2x Master Mix (NEB) was used in each reaction. The thermocycling protocol was to preheat the thermocycler to 98°C, then add samples for 3 minutes at 98°C, then 32x cycles of 98°C for 10 s, 63°C for 30 s, 72°C for 30 s, and then a final step of 72°C for 2 minutes. All subsequent steps were performed outside the PCR hood. The PCR reactions were pooled and ≥ 140 μL were run on at least three lanes of a 2% TBE gel alongside a 100-bp ladder for at least one hour, the library band around 395 bp was cut out, and DNA was purified using the QIAquick Gel Extraction kit (QIAgen) with a 30 ul elution into non-stick tubes (Ambion). A confirmatory gel was run to verify that small products were removed. These libraries were then quantified with a Qubit HS kit (Thermo Fisher), pooled with 15% PhiX control (Illumina), and sequenced on an Illumina NextSeq with a High output kit using a single end forward read (266 or 300 cycles) and 8 cycle index reads.
From Tycko et al 2020: We queried the UniProt database (UniProt Consortium, 2015) for human genes that can localize to the nucleus. Subcellular location information on UniProt is determined from publications or ‘by similarity’ in cases where there is only a publication on a similar gene (e.g., ortholog) and is manually reviewed. We then retrieved Pfam-annotated domains using the ProDy searchPfam function (Bakan et al., 2011). We filtered for domains that were 80 amino acids or shorter and excluded the C2H2 Zinc finger DNA-binding domains, which are highly abundant, repetitive, and not expected to function as transcriptional effectors. We retrieved the sequence of the annotated domain and extended it equally on either side to reach 80 amino acids total. Duplicate sequences were removed, then codon optimization was performed for human codon usage, removing BsmBI sites and constraining GC content to between 20% and 75% in every 50 nucleotide window (performed with DNA chisel (Zulkower and Rosser, 2020)). 499 random controls of 80 amino acids lacking stop codons were computationally generated as controls. 362 elements tiling the DMD protein in 80 amino acid tiles with a 10 amino acid sliding window were also included as controls because DMD was not thought to be a transcriptional regulator. In total, the library consists of 5,955 elements (Table S1).
Amplicons of the genome-integrated library members were generated via genomic extraction and subsequent PCR, and were sequenced using an Illumina NextSeq.

treatment_protocol: 72 hours post-infection 10 mg/mL blasticidin (Gibco) was added. 48 hours after blasticidin addition, 100 ng/mL doxycycline was added and cells were maintained in both blast + dox for 5 more days. Cells were sampled at day 2 of doxycycline recruitment for magnetic separation and downstream sequencing. After 5 days of recruitment, cells were spun down, washed with PBS, and resuspended in dox-free/blast-free RPMI. 5 days after doxycycline release, cells were again sampled for magnetic separation and downstream sequencing. Cells were maintained at a maintenance coverage of 3,000-30,000 per library element on average. Library preparation and sequencing was performed identically as in to sequence the variable effector domain 21

tag: cell line


title: KRAB+Pfam memory screen, unbound fraction, br2

value: Blasticidin 7d, dox 5d, wash 5d


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-17


title: GC-A fl/fl p38 fl/fl Nephrin-Cre (+/+)mice

value: male


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-16


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-8


title: KRAB+Pfam memory screen, bound fraction br2


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-14


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-10


title: Control MDA-MB-231, biological rep1

city: Seoul

first: Na-Lee

last: Ka

address: 1 Gwanak-ro, Gwanak-gu

country: South Korea

institute: Seoul National University

hyb_protocol: Approximately 5.5 μg of labeled DNA target was hybridized to the Affymetrix GeneChip Array at 45°C for 16 h.

scan_protocol: Hybridized arrays were washed and stained on a GeneChip Fluidics Station 450 and scanned on a GCS3000 Scanner (Affymetrix).

data_processing: The probe cell intensity data computation and a CEL file generation was performed using Affymetrix® GeneChip Command Console® Software (AGCC).

source_name: Human breast carcinoma cell line

label_protocol: The sense cDNA was then fragmented and biotin-labeled with TdT (terminal deoxynucleotidyl transferase) using the GeneChip WT Terminal labeling kit.

growth_protocol: Control or NR1D1 KO MDA-MB-231 cells were maintained in Dulbecco’s modified Eagle’s medium supplemented with 10% fetal bovine serum. Cells were grown in an incubator with 5% CO2/95% air at 37 ℃.

extract_protocol: Trizol extractions of total RNA was performed using manufacturere's instructions. cDNA was synthesized using the GeneChip WT (Whole Transcript) Amplification kit as described by the manufacturer.

treatment_protocol: Control or NR1D1 KO MDA-MB-231 cells were treated with 200 μM H2O2 for 72 h.

value: Control


title: NR1D1 KO MDA-MB-231, biological rep2

value: NR1D1 KO


title: KRAB+Pfam silencing screen, unbound fraction, br2

value: Blasticidin 7d, dox 2d


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-7


title: tcf-repressed sample, biological rep2

city: Barcelona

first: Antonio

last: Herrera

address: Baldiri i Reixac

country: Spain

institute: IBMB-CSIC

description: Gene expression data from post-mitotic neural progenitors of chicken embryos expressing a Tcf repressor

hyb_protocol: Hybridization were performed according to the standard Affymetrix protocol for GeneChip Chicken Genome Array.

scan_protocol: GeneChips were scanned using the GeneChip Scanner 7G (Affymetrix).

data_processing: The data were analyzed with RMA algorithm using NetAffx Analysis Center.

organism: Gallus gallus

source_name: Postmitotic neural progenitors during early differentiation expression Tcf repressor

label_protocol: RNA were prepared according to WTA2 protocold following the Affymetrix instructions for GeneChip Chicken Genome Array.

growth_protocol: Eggs from White-Leghorn chickens were incubated at 37.8 °C in an atmosphere of 45% humidity and the embryos were staged according to Hamburger and Hamilton (HH: (Hamburger and Hamilton, 1992).

extract_protocol: After cell sorting, RNA was extracted by RNeasy Micro Kit (Quiagen 74004) according to the manufacturer's instructions.

treatment_protocol: Chick embryos were electroporated with column purified plasmid DNA in H2O containing Fast Green (0.5 µg/µl). Briefly, plasmid DNA was injected into the lumen of HH12 (E2) or HH18 (E3) NTs, electrodes were placed on either side of the NT, and electroporation was carried out by applying five 50 ms square pulses using an Intracel Dual Pulse (TSS10) electroporator set at 25 V. Transfected embryos were allowed to develop to the specific stages and then dissected under a fluorescence dissecting microscope.

value: neural tube at the level of the spinal cord

value: wild-type

tag: age

value: 4 days of incubation


title: NR1D1 KO MDA-MB-231, biological rep1


title: Control MDA-MB-231, biological rep3


title: KRAB+Pfam memory screen, bound fraction br1


title: control sample, biological rep1

description: Gene expression data from post-mitotic neural progenitors of chicken embryos

source_name: Postmitotic neural progenitors during early differentiation


title: control sample, biological rep2


title: NR1D1 KO MDA-MB-231, biological rep3


title: tcf-repressed sample, biological rep1


title: Stylophora pistillata, 2'3'-cGAMP, colony 2, sample 2

description: cGAMP-2B in processed data table, gene annotation listed in S_pistillata_gene_annotation.gtf

value: Adult colony

value: wild type


title: control sample, biological rep3


title: Control MDA-MB-231, biological rep2


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-9

value: VISp


title: KRAB+Pfam memory screen, unbound fraction, br1


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-6


title: KRAB+Pfam silencing screen, unbound fraction, br1


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-3


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-5


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-4


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-2


title: KRAB+Pfam silencing screen, bound fraction, br2


title: KRAB+Pfam silencing screen, bound fraction, br1


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-51


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-52


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-48


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-50


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-53


title: tcf-repressed sample, biological rep3


title: BrainCell_Enhancer-eHGT_023h_MouseID-497548_Cell-1


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-46


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-49


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-45


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-47


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-44


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-43


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-39


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-41


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-42


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-37


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-40


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-38


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-36


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-35


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-34


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-33


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-31


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-30


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-32


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-28


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-29


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-27


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-46


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-26


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-25


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-47


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-44


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-42


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-41


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-37


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-36


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-39


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-38


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-35


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-40


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-34


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-33


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-32


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-29


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-31


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-30


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-27


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-28


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-25


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-24


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-23


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-21


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-45


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-43


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-22


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-19


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-20


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-23


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-17


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-21


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-22


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-20


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-16


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-19


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-17


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-24


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-13


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-14


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-18


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-12


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-26


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-8


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-15


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-11


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-10


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-7


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-18


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-5


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-2


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-1


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-3


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-4


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-16


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-14


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-15


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-12


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-11


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-10


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-9


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-8


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-6


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-4


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-5


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-7


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-9


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-3


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-2


title: BrainCell_Enhancer-eHGT_128h_MouseID-473546_Cell-6


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-1


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-46


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-47


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-45


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-44


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-42


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-41


title: BrainCell_Enhancer-eHGT_128h_MouseID-475243_Cell-13


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-39


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-38


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-43


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-40


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-35


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-33


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-31


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-34


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-37


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-36


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-32


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-29


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-28


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-26


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-25


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-27


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-24


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-23


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-22


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-21


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-20


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-19


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-15


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-30


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-13


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-17


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-12


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-18


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-16


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-9


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-10


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-14


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-11


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-6


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-5


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-2


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-8


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-4


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-7


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-3


title: BrainCell_Enhancer-eHGT_128h_MouseID-468101_Cell-1


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-42


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-43


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-41


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-44


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-37


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-38


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-39


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-36


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-35


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-34


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-32


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-28


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-31


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-33


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-29


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-30


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-24


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-21


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-17


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-18


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-27


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-23


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-16


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-25


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-19


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-40


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-13


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-12


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-11


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-8


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-10


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-9


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-26


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-22


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-6


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-5


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-20


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-2


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-15


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-32


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-3


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-1


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-31


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-29


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-30


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-25


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-24


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-23


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-4


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-14


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-28


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-27


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-21


title: BrainCell_Enhancer-eHGT_017h_MouseID-410195_Cell-7


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-22


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-20


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-19


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-18


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-17


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-14


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-16


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-13


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-12


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-11


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-26


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-9


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-7


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-5


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-6


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-8


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-4


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-10


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-1


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-2


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-41


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-39


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-42


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-40


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-38


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-36


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-35


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-33


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-15


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-32


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-31


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-30


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-25


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-26


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-29


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-27


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-28


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-24


title: BrainCell_Enhancer-eHGT_017h_MouseID-408805_Cell-3


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-23


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-20


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-21


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-19


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-22


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-17


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-34


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-18


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-16


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-13


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-37


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-11


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-8


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-15


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-10


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-12


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-14


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-9


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-4


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-6


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-7


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-5


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-44


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-42


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-1


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-41


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-45


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-40


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-38


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-35


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-39


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-32


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-37


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-36


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-34


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-29


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-30


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-27


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-28


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-24


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-31


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-33


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-3


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-23


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-22


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-43


title: BrainCell_Enhancer-eHGT_017h_MouseID-406074_Cell-2


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-21


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-18


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-17


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-16


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-15


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-14


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-13


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-26


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-11


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-8


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-25


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-9


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-5


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-6


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-7


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-1


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-35


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-20


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-2


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-34


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-19


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-33


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-4


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-31


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-29


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-28


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-30


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-32


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-27


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-12


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-10


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-25


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-24


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-21


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-23


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-20


title: BrainCell_Enhancer-eHGT_019h_MouseID-401668_Cell-3


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-18


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-17


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-15


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-16


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-26


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-19


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-13


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-12


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-22


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-14


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-10


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-8


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-9


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-7


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-5


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-6


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-11


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-4


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-2


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-1


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-48


title: BrainCell_Enhancer-eHGT_019h_MouseID-400156_Cell-3


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-46


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-47


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-45


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-43


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-44


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-39


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-42


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-40


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-41


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-36


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-37


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-34


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-35


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-30


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-31


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-32


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-29


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-27


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-28


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-26


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-22


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-24


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-25


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-23


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-21


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-19


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-20


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-17


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-18


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-15


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-38


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-16


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-14


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-13


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-12


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-10


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-7


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-9


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-8


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-11


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-33


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-6


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-2


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-1


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-4


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-5


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-43


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-40


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-46


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-45


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-44


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-38


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-41


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-33


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-39


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-31


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-30


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-36


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-37


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-34


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-32


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-29


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-25


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-24


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-27


title: BrainCell_Enhancer-eHGT_019h_MouseID-392043_Cell-3


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-47


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-23


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-21


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-22


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-26


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-42


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-28


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-19


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-18


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-16


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-35


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-15


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-14


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-13


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-11


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-17


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-12


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-10


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-9


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-8


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-7


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-6


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-5


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-1


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-3


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-47


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-46


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-4


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-43


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-2


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-48


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-41


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-44


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-45


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-40


title: BrainCell_Enhancer-hDLXI56i_MouseID-400157_Cell-20


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-38


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-39


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-37


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-36


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-35


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-34


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-32


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-33


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-29


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-31


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-30


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-26


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-25


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-28


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-27


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-42


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-21


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-22


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-20


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-24


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-23


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-19


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-17


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-14


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-15


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-18


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-12


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-11


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-13


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-16


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-10


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-9


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-8


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-7


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-6


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-5


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-4


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-47


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-1


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-45


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-44


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-42


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-43


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-46


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-41


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-38


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-40


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-39


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-33


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-37


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-31


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-36


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-30


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-27


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-26


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-25


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-24


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-3


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-22


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-23


title: BrainCell_Enhancer-hDLXI56i_MouseID-384912_Cell-2


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-21


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-20


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-19


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-18


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-17


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-14


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-16


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-13


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-12


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-29


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-10


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-34


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-15


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-35


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-9


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-32


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-6


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-7


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-11


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-28


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-8


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-5


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-4


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-2


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-1


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-46


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-45


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-44


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-42


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-43


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-41


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-39


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-40


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-32


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-27


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-30


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-29


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-36


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-35


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-31


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-24


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-34


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-23


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-21


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-33


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-26


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-28


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-22


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-19


title: BrainCell_Enhancer-hDLXI56i_MouseID-382159_Cell-3


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-18


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-17


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-15


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-16


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-13


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-38


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-14


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-37


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-12


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-11


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-10


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-25


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-20


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-9


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-3


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-5


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-2


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-32


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-4


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-31


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-35


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-7


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-34


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-8


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-33


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-26


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-6


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-28


title: BrainCell_Enhancer-eHGT_058h_MouseID-497551_Cell-1


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-27


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-23


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-29


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-22


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-21


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-30


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-20


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-19


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-18


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-16


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-15


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-24


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-12


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-9


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-11


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-7


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-5


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-3


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-13


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-2


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-14


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-37


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-36


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-1


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-34


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-8


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-32


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-17


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-25


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-39


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-10


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-4


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-38


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-27


title: BrainCell_Enhancer-eHGT_058h_MouseID-463481_Cell-6


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-31


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-26


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-24


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-22


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-21


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-25


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-18


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-17


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-35


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-28


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-29


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-33


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-20


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-30


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-19


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-15


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-14


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-13


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-10


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-11


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-8


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-12


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-16


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-7


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-9


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-6


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-5


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-23


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-3


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-2


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-4


title: BrainCell_Enhancer-eHGT_058h_MouseID-458159_Cell-1


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-43


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-44


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-46


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-45


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-41


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-42


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-39


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-35


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-40


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-37


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-36


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-38


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-31


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-28


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-33


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-27


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-29


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-32


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-34


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-30


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-26


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-21


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-25


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-23


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-24


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-19


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-22


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-20


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-18


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-17


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-16


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-14


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-12


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-13


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-11


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-15


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-9


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-8


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-7


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-6


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-10


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-4


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-3


title: CML-9, treated

city: Glasgow

first: Kevin

last: Rattigan

address: Institute of Cancer Sciences, Wolfson Wohl Cancer Research Centre, Garscube Estate, Glasgow, Bearsden

country: United Kingdom

institute: University of Glasgow

data_processing:
FastQ files were generated using Illumina's bcl2fastq.
QC, alignment, and parsing of files into count matrices was performed in command line.
Sickle and Scythe were used for QC, fastqc was used to generate quality metrics, while Hisat2, samtools and stringtie were used for alignment and assembly.
Assembly: GRCh38
Supplementary files format and content: CSV matrix of counts for all samples

source_name: Peripheral blood

extract_protocol:
RNA was extracted from 200,000 CML CD34+ cells using an RNA easy mini kit (Qiagen) according to manufactures instructions.
Libraries were prepared using Illumina TruSeq Stranded mRNA LT Kit (Illumina)

value: Peripheral blood

tag: cell type

value: CD34+ LSC

value: Imatinib


title: BrainCell_Enhancer-eHGT_078h_MouseID-454782_Cell-45


title: CML-9, untreated


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-5


title: BrainCell_Enhancer-eHGT_078h_MouseID-454782_Cell-43


title: CML-5, untreated


title: BrainCell_Enhancer-eHGT_078h_MouseID-454782_Cell-44


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-1


title: CML-5, treated


title: BrainCell_Enhancer-eHGT_078h_MouseID-454782_Cell-42


title: CML-8, untreated


title: BrainCell_Enhancer-eHGT_078h_MouseID-498749_Cell-2


title: CML-8, treated


title: BrainCell_Enhancer-eHGT_078h_MouseID-454782_Cell-40


title: CML-7, treated


title: BrainCell_Enhancer-eHGT_078h_MouseID-454782_Cell-39


title: BrainCell_Enhancer-eHGT_078h_MouseID-454782_Cell-37


title: BrainCell_Enhancer-eHGT_078h_MouseID-454782_Cell-36


title: CML-7, untreated


title: BrainCell_Enhancer-eHGT_078h_MouseID-454782_Cell-35


title: BrainCell_Enhancer-eHGT_078h_MouseID-454782_Cell-46