title: HBA_220525_H1930004_CX47_SI_3C_2_P1-3-I3-N18


title: HBA_220525_H1930004_CX47_SI_3C_2_P1-4-I3-C7

status: Public on Jul 05 2023

type: SRA

city: La Jolla

first: Joseph

middle: R

last: Ecker

state: CA

address: 10010 North Torrey Pines Road

department: Genomic Analysis Laboratory

country: USA

institute: HHMI-Salk-Institute

library_source: genomic

data_processing:
Reads trimed with Cutadapt for adapters and low quality bases (Phred score >= 20)
The resulting files are mapped to in-silico bisulfite converted reference genome using Bismark.
The raw BAM file will be filtered using samtools to filter reads by MAPQ > 10 and use Picard to remove PCR duplicates
Tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls will be generated with in-house developing package using the filtered BAM files
Tab-delimited files (HIC files) describing the chromatin contacts will be generated with in-house developing package using the filtered BAM files
Assembly: hg38-donor-snp-substituted
Supplementary files format and content: tab-delimited files (ALLC files) describing the quantity of unmethylated and methylated cytosine base calls. Columns are: 1. Chromosome, 2. Position, 3. Strand, 4. Cytosin Context, 5. methylated base call, 6. total mapped base call, 7. not used, place holder column
Supplementary files format and content: tab-delimited files (HIC files) describing the chromatin contacts. Columns are: 1. Strand1, 2. Chromosome1, 3. Position1, 4. place holder column, always be 0, 5. Strand2, 6. Chromosome2, 7. Position2, 8. place holder column, always be 1.
Library strategy: snm3C-seq

molecule: genomic DNA

organism: Homo sapiens

extract_protocol:
Regions of human brains were dissected.
Library prepared following protocol discribed in Dong-Sung Lee, Chongyuan Luo, Jingtian Zhou, Sahaana Chandran, Angeline Rivkin, Anna Bartlett, Joseph R. Nery, Conor Fitzpatrick, Carolyn O’Connor,Jesse R. Dixon, Joseph R. Ecker. 2019. “Simultaneous profiling of 3D genome structure and DNA methylation in single human cells.” Nat Methods. 16(10): 999–1006.

tag: brain region

value: SI

tag: gender

value: M


title: HBA_220525_H1930004_CX47_SI_3C_2_P1-3-I3-M5


title: HBA_220525_H1930004_CX47_SI_3C_2_P1-3-I3-M18


title: HBA_220525_H1930004_CX47_SI_3C_2_P1-3-I3-M6


title: HBA_220525_H1930004_CX47_SI_3C_2_P1-3-I3-M17


title: HBA_220525_H1930004_CX47_SI_3C_2_P1-3-I3-L6


title: HBA_220525_H1930004_CX47_SI_3C_2_P1-3-I3-L5


title: HBA_220525_H1930004_CX47_SI_3C_2_P1-3-I3-L18


title: HBA_220525_H1930004_CX47_SI_3C_2_P1-3-I3-K6


title: HBA_220525_H1930004_CX47_SI_3C_2_P1-3-I3-L17


title: HBA_220525_H1930004_CX47_SI_3C_2_P1-3-I3-K18


title: HBA_220525_H1930004_CX47_SI_3C_2_P1-4-I3-A20


title: HBA_220525_H1930004_CX47_SI_3C_2_P1-3-I3-K5


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title: HBA_220525_H1930004_CX47_SI_3C_2_P1-3-I3-N6


title: HBA_220525_H1930004_CX47_SI_3C_2_P1-3-I3-J5


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title: HBA_220525_H1930004_CX47_SI_3C_2_P1-1-I3-A1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-O23

value: SEP


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title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-L12


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title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-J11


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title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-J23


title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-H24


title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-H12


title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-I24


title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-I11


title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-H11


title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-H23


title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-G12


title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-G11


title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-G23


title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-F24


title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-F12


title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-F23


title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-G24


title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-F11


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title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-D24


title: HBA_220322_H1930001_CX46_SEP_3C_1_P8-6-G10-C24


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title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-N15


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-M4


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-3-I2-B17


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-K3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-K16


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-M3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-K4


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-M16


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-M15


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-L15


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-L4


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-J4


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-J3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-N3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-I4


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-I3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-J15


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-H3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-H16


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-I16


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-H15


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-I15


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-J16


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-G16


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-H4


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-F3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-F4


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-G3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-L3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-G15


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-F16


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-K15


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-F15


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-E4


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-D4


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-E3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-E15


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-D16


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-D3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-D15


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-G4


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-C4


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-C3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-C16


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-A4


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-B4


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-C15


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-B3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-B15


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-A16


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-B16


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-P2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-A15


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-A3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-P1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-P13


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-O2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-O14


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-O13


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-O1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-2-I2-E16


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-N2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-N13


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-N1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-M2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-N14


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-M13


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-M1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-M14


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-L2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-L14


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-L1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-K2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-K13


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-K14


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-I13


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-J1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-J14


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-I2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-I14


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-J2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-K1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-H14


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-I1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-J13


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-H13


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-G2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-H2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-G14


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-G13


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-H1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-F2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-E13


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-G1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-F14


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-E2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-L13


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-D14


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-D13


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-D1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-C2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-C13


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-B14


title: JO, Male, ZT16, Rep3

city: London

first: Marta

last: Andrés

address: 332 Grays Inn Rd

department: Ear Institute

country: United Kingdom

institute: University College London

library_source: transcriptomic

data_processing:
Read counts were quantified using Kallisto.
Assembly: VectorBase-53_AgambiaePEST_AnnotatedTranscripts.fasta
Supplementary files format and content: tab-delimited tsv file (raw_counts.tsv) includes Kallisto-estimated raw counts for each Sample.

molecule: total RNA

organism: Anopheles gambiae

source_name: JO

extract_protocol:
RNA was extracted (Quiagen) and its integrity was confirmed using Agilent’s 2200 Tapestation.
RNA libraries for RNA-seq were prepared using the SMART-Seq v4 Ultra Low Input RNA Kit (Clontech Laboratories, Inc.) following manufacturer's protocols.

tag: tissue

value: JO

tag: genotype

value: Kisumu

tag: treatment


title: JO, Male, ZT12, Rep3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-B13


title: JO, Male, ZT16, Rep1


title: JO, Male, ZT20, Rep1


title: JO, Male, ZT20, Rep3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-E1


title: JO, Male, ZT16, Rep2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-B1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-A2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-D2


title: JO, Male, ZT12, Rep1


title: JO, Male, ZT08, Rep2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-A13


title: JO, Male, ZT08, Rep1


title: JO, Male, ZT12, Rep2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-A14


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-A1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-B2


title: JO, Male, ZT04, Rep3


title: JO, Male, ZT08, Rep3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-P12


title: JO, Male, ZT20, Rep2


title: JO, Male, ZT04, Rep2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P6-1-I2-C1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-P11


title: JO, Male, ZT04, Rep1


title: JO, Male, ZT00, Rep3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-O24


title: JO, Male, ZT00, Rep2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-O23


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-O12


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-P23


title: JO, Female, ZT20, Rep1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-N24


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-N23


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-O11


title: JO, Female, ZT16, Rep3


title: JO, Female, ZT20, Rep2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-N12


title: JO, Female, ZT16, Rep2


title: JO, Female, ZT12, Rep3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-M12


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-N11


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-M11


title: JO, Female, ZT16, Rep1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-M23


title: JO, Female, ZT12, Rep2


title: JO, Female, ZT12, Rep1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-L24


title: JO, Female, ZT08, Rep3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-L23


title: JO, Female, ZT08, Rep2


title: JO, Female, ZT20, Rep3


title: JO, Female, ZT08, Rep1


title: JO, Male, ZT00, Rep1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-L11


title: JO, Female, ZT04, Rep3


title: JO, Female, ZT04, Rep2


title: JO, Female, ZT00, Rep2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-M24


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-J24


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-K24


title: JO, Female, ZT04, Rep1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-J23


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-K23


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-K11


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-J12


title: JO, Female, ZT00, Rep3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-J11


title: JO, Female, ZT00, Rep1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-L12


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-I23


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-I12


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-I11


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-H24


title: CD115+Ito cells_3day_biologycal rep_3

type: RNA

city: Moscow

first: Polina

last: Vishnyakova

address: Oparina 4

country: Russia

institute: National Medical Research Center for Obstetrics, Gynecology and Perinatology

description: Gene expression data from cultivation of  monocytic macrophages for 1 day with MCSF and with Ito cells for 3 day

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Gene 2.0 ST Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using the Affimetrix GeneChip Scanner 3000 7g

data_processing: The data were analyzed with Transcriptome Analysis Console (TAC) Software  version 4.0.2 using Affymetrix default analysis settings and RMA algorithm

label: biotin

organism: Mus musculus

source_name: monocytic macrophages RNA

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol

growth_protocol: Macrophages samples were collected, frozen, lysed in QIAZOL reagent for the following RNA extraction

extract_protocol: Ordinary extraction of total RNA was performed according to the manufacturer's instructions (Qiagen).

treatment_protocol: Macrophages samples were cellected on different time periods after cocultivation with Ito cells, CD146cells, HGF/cultivation with MCSF

value: Cultivation of monocytic macrophages for 1 day with MCSF and with Ito cells for 3 day.


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-I24


title: CD115+Ito cells_3day_biologycal rep_1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-H12


title: f4/80+CD146_3day_biologycal rep_2

description: Gene expression data from cultivation of Kupffer cells for 1 day with MCSF and with CD146 cells for 3 day

source_name: Kupffer cells RNA

value: Cultivation of Kupffer cells for 1 day with MCSF and with CD146 cells for 3 day.


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-G24


title: f4/80+Ito cells_3day_biologycal rep_1

description: Gene expression data from cultivation of Kupffer cells for 1 day with MCSF and with Ito cells for 3 day

value: Cultivation of Kupffer cells for 1 day with MCSF and with Ito cells for 3 day.


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-H11


title: f4/80+Ito cells_3day_biologycal rep_3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-H23


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-G23


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-F23


title: f4/80+CD146_3day_biologycal rep_3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-G11


title: CD115+Ito cells_3day_biologycal rep_2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-F24


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-F12


title: F4/80+HGF_3day_biologycal rep_1

description: Gene expression data from cultivation of Kupffer cells for 1 day with MCSF and with HGF for 3 day

value: Cultivation of Kupffer cells for 1 day with MCSF and with HGF for 3 day.


title: f4/80+CD146_3day_biologycal rep_1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-G12


title: F4/80+HGF_3day_biologycal rep_2


title: CD115+CD146_3day_biologycal rep_3

description: Gene expression data from cultivation of  monocytic macrophages for 1 day with MCSF and with CD146 cells for 3 day

value: Cultivation of monocytic macrophages for 1 day with MCSF and with CD146 cells for 3 day.


title: F4/80+HGF_3day_biologycal rep_3


title: CD115+CD146_3day_biologycal rep_1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-F11


title: CD115+CD146_3day_biologycal rep_2


title: CD115+HGF_3day_biologycal rep_2

description: Gene expression data from cultivation of monocytic macrophages for 1 day with MCSF and with HGF for 3 day

value: Cultivation of monocytic macrophages for 1 day with MCSF and with HGF for 3 day.


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-E23


title: CD115+HGF_3day_biologycal rep_3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-E24


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-E11


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-D24


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-E12


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-C23


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-D11


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-D23


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-C24


title: F4/80_3day_biologycal rep_3

description: Gene expression data from cultivation of Kupffer cells with MCSF for 4 days

value: Cultivation of Kupffer cells with MCSF for 4 days.


title: F4/80_3day_biologycal rep_2


title: CD115+HGF_3day_biologycal rep_1


title: f4/80+CD146_1day_biologycal rep_2

description: Gene expression data from cultivation of Kupffer cells for 1 day with MCSF and with CD146 cells for 1 day

value: Cultivation of Kupffer cells for 1 day with MCSF and with CD146 cells for 1 day.


title: f4/80+Ito cells_3day_biologycal rep_2


title: CD115_3day_biologycal rep_1

description: Gene expression data from cultivation of monocytic macrophages with MCSF for 4 days

value: Cultivation of monocytic macrophages with MCSF for 4 days.


title: F4/80_3day_biologycal rep_1


title: f4/80+CD146_1day_biologycal rep_3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-C12


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-B23


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-B24


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-C11


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-B12


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-B11


title: CD115_3day_biologycal rep_2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-A24


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-A23


title: CD115_3day_biologycal rep_3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-P9


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-P21


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-P10


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-A12


title: F4/80 + Ito cells_1 day_biologycal rep_2

description: Gene expression data from cultivation of Kupffer cells for 1 day with MCSF and with Ito cells for 1 day

value: Cultivation of Kupffer cells for 1 day with MCSF and with Ito cells for 1 day.


title: F4/80 + Ito cells_1 day_biologycal rep_1


title: CD115+HGF_1day_biologycal rep_3

description: Gene expression data from cultivation of monocytic macrophages for 1 day with MCSF and with HGF for 1 day

value: Cultivation of monocytic macrophages for 1 day with MCSF and with HGF for 1 day.


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-6-C23-A11


title: CD115+CD146_1day_biologycal rep_1

description: Gene expression data from cultivation of  monocytic macrophages for 1 day with MCSF and with CD146 cells for 1 day

value: Cultivation of monocytic macrophages for 1 day with MCSF and with CD146 cells for 1 day.


title: CD115 + Ito cells_1 day_biologycal rep_2

description: Gene expression data from cultivation of monocytic macrophages for 1 day with MCSF and with Ito cells for 1 day

value: Cultivation of monocytic macrophages for 1 day with MCSF and with Ito cells for 1 day.


title: F4/80 + Ito cells_1 day_biologycal rep_3


title: CD115+CD146_1day_biologycal rep_2


title: f4/80+CD146_1day_biologycal rep_1


title: CD115 + Ito cells_1 day_biologycal rep_3


title: CD115+CD146_1day_biologycal rep_3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-P22

value: M


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-O21

value: SEP


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-O10


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-O9


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-O22


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-N21


title: CD115 + Ito cells_1 day_biologycal rep_1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-N22


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-M9


title: CD115_1day_biologycal rep_3

description: Gene expression data from cultivation of monocytic macrophages with MCSF for 2 days

value: Cultivation of monocytic macrophages with MCSF for 2 days.


title: CD115_1day_biologycal rep_2


title: F4/80+HGF_1day_biologycal rep_2

description: Gene expression data from cultivation of Kupffer cells for 1 day with MCSF and with HGF for 1 day

value: Cultivation of Kupffer cells for 1 day with MCSF and with HGF for 1 day.


title: CD115+HGF_1day_biologycal rep_2


title: F4/80+HGF_1day_biologycal rep_3


title: F4/80+HGF_1day_biologycal rep_1


title: CD115_1day_biologycal rep_1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-M10


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-N10


title: NC2

city: Houston

first: Michael

last: Jochum

state: TX

address: 1 Baylor Plaza

department: Obstetrics and Gynecology

institute: Baylor College of Medicine

description: 10x Genomics Visium Spatial Gene Expression (v2)

data_processing:
Single-cell and spatial transcriptomics analyses. Reads were demultiplexed and aligned to a custom human (GRCh38) and SARS-CoV-2 reference genome (NC_045512.2) using SpaceRanger (v1.3.0) and custom bash scripts. Downstream analyses were done using the package Seurat (v4.0.3) in rStudio (v4.1.1). Counts matrices were filtered iteratively to exclude low-quality transcriptomes and clusters defined by quality control metrics (e.g. mitochondrial or hemoglobin gene expression). Spatial transcriptomes were normalized and scaled using a negative binomial model (SCTransform) and the top 3,000 most variable transcripts were used for to principal component analysis dimension reduction. The first 30 PCA dimensions were used for K-nearest neighbors’ analysis, clustered using a Louvain algorithm with the default resolution parameter (0.6), and visualized by unique manifold approximation and projection (UMAP) in two dimensions. Significantly upregulated transcripts were manually examined and compared to the term placenta atlas in addition to using EnrichR(58), PlacentaCellEnrich(110), and the Human Protein Atlas(111) to annotate clusters. Pseudotime trajectory analysis was done using Monocle3 (v1.0.0) utilizing gene sets and starting points denoted in the text. Spatial and scRNA-seq datasets were integrated using reciprocal PCA of 3,000 reference transcripts prior to clustering.
Assembly: GRCh38_and_NC_045512.2
Supplementary files format and content: h5 counts matrix
Library strategy: Spatial Transcriptomics

molecule: polyA RNA

organism:
Homo sapiens
Severe acute respiratory syndrome coronavirus 2

source_name: Placenta

extract_protocol: Spatial transcriptomics. Human placentae from distinct regions including the chorionic villi, decidua, and chorioamniotic membranes, or cross-sections from the parenchyma, were fresh-frozen in optimal cutting temperature solution (FF-OCT). Blocks were cryosectioned and H&E stained directly on 10X Genomics Visium Gene Expression slides (v2) and imaged using a Nikon Eclipse SE Ni microscope using a Nikon DS-Ri1 camera, Nikon Plan Apo objective at 10x magnification (0.45 aperture, 0.91 μm/pixel resolution). Tissues were permeabilized and RNA was subject to spatial transcriptomics library preparation including poly(dT) reverse transcription. Libraries were sequenced on the Illumina NovaSeq S4 platform with 2% PhiX.

value: Placenta

tag: cell type

value: Heterogeneous

tag: condition

value: NegativeControl


title: HP1b

value: IUFD


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-N9


title: CD115+HGF_1day_biologycal rep_1


title: F4/80_1day_biologycal rep_2

description: Gene expression data from cultivation of Kupffer cells with MCSF for 2 days

value: Cultivation of Kupffer cells with MCSF for 2 days.


title: HP1a


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-L22


title: F4/80_1day_biologycal rep_3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-M21


title: NC3


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-L9


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-M22


title: SP5

value: Symptomatic


title: F4/80_1day_biologycal rep_1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-L10


title: ND3


title: NC4


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-K9


title: ND2


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-K10


title: Zebra_Control

city: 경상남도 양산시

first: Eun Jung

last: Kwon

state: 경상남도

address: Pusan National University, Yangsan,, Republic of Korea

country: South Korea

institute: Pusan National University

description: 10X genomics

data_processing:
Quality of raw sequence was checked using FastQC. Chromium single-cell RNA-seq output was processed using Cell Ranger(v5.0.0) to align reads and generate functional barcode matrices.
Downstream analysis of the control and radiation group-data derived from the 10X Cell Ranger was conducted using Seurat (version 4.3.0) in R (version 4.2.2) for data integrating, scaling, clustering, and visualizing.
Assembly: GRCz11
Supplementary files format and content: Cell Ranger output files

organism: Danio rerio

source_name: zebrafish embryos

extract_protocol:
Samples were prepared using the Chromium controller and Next Gem Single cell 5’ Reagent v2 kits (10x genomics) according to the 10x Chromium Single Cell 5’ v2 guidelines (10x Genomics, document no. CG000331). Briefly, the single cell suspension was diluted with nuclease-free water to yield 10,000 targeted cells, mixed with reverse transcription master mix, and then loaded with Single Cell 5′ Gel Beads and Partitioning Oil into a Single Cell K Chip.
The amplified cDNA generated by reverse transcription of RNA was uniquely barcoded, followed in sequence by fragmentation, end repair, A-tailing, and adapter ligation. After quantified and qualified with the qPCR Quantification Protocol Guide (KAPA) and the Agilent Technologies 4200 TapeStation (Agilent technologies) respectively, the libraries were sequenced to 2 x 150 bp paired-end reads on the Illumina HiSeq X ten platform.

value: zebrafish embryos

tag: Stage

value: Wild-type


title: SP4


title: Zebra_IR

description: 10X genomics

value: IR-exposure


title: SP2

value: Asymptomatic


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-J22


title: SP1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-J9


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-L21


title: ND1


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-J21


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-J10


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-I9


title: NC1b

value: NegativeControlDecidua


title: NC1c


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-I10


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-I22


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-I21


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-H9


title: GDM_uterine_GBS_G10U

first: Vicki

last: Mercado-Evans

address: One Baylor Plaza

description:
Dual RNA-sequencing; Co-Transcriptome
G10U

data_processing:
Demultiplexing, quality control, and adapter trimming was performed with bcl-convert (v3.9.3)
For bacterial sequences, quality control and adapter trimming was performed with bcl2fastq, read mapping was performed with HISAT2, and read quantification was performed using Subread’s featureCounts with alignment to the A909 reference genome.
For murine sequences, quality control and adapter trimming were performed with bcl-convert. Read mapping was performed via STAR to the mm10 version of the mouse genome and feature quantification was performed using RSEM.
Raw counts normalization and differential expression analyses were performed using R package DESeq2 (v 1.40.1).
Assembly: GRCm39 ; GCF_000012715.1
Supplementary files format and content: tab-delimited text file include raw counts for each sample (GBS and murine host)

source_name: Uterus

extract_protocol:
Samples were DNAse treated with Invitrogen DNAse (RNAse free) and extraction was performed by SeqCenter.
Library preparation was performed using Illumina’s Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp IDT for Illumina indices. Performed by SeqCenter.

treatment_protocol: On days 14.5 and 15.5 of gestation, 1×107 colony forming units (CFUs) of GBS in a 10mL PBS solution, was introduced into the murine vaginal tract with a gel loading pipette tip in non-diabetic and gestational diabetic pregnant mice. Tissues were harvested 3 days later for dual RNA sequencing and bacterial burden quantification. Due to a multi-day mating schedule there is a range in day(s) of GBS challenge of E12.5-E15.5. Accordingly, the experimental endpoint of E17.5 has +/- 3 day window.

value: Uterus

tag: agent

value: Group b Streptococcus A909

tag: host diabetic_status

value: Gestational diabetes

tag: mouse strain


title: GDM_vaginal_GBS_G6V

description:
Dual RNA-sequencing; Co-Transcriptome
G6V

source_name: Vagina

value: Vagina


title: GDM_vaginal_GBS_G10V

description:
Dual RNA-sequencing; Co-Transcriptome
G10V


title: SP3


title: GDM_uterine_GBS_G6U

description:
Dual RNA-sequencing; Co-Transcriptome
G6U


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-H21

value: SEP

value: M


title: GDM_vaginal_GBS_G5V

description:
Dual RNA-sequencing; Co-Transcriptome
G5V


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-H22


title: NC1a

value: Placenta

value: NegativeControlChorionicVilli


title: GDM_uterine_GBS_G5U

description:
Dual RNA-sequencing; Co-Transcriptome
G5U


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-H10


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-K21


title: GDM_vaginal_GBS_G2V

description:
Dual RNA-sequencing; Co-Transcriptome
G2V


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-G22


title: GDM_uterine_GBS_G2U

description:
Dual RNA-sequencing; Co-Transcriptome
G2U


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-G21


title: Pregnant_control_vaginal_GBS_C9V

description:
Dual RNA-sequencing; Co-Transcriptome
C9V

value: control


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-G10


title: Pregnant_control_vaginal_GBS_C7V

description:
Dual RNA-sequencing; Co-Transcriptome
C7V


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-F9


title: Pregnant_control_uterine_GBS_C9U

description:
Dual RNA-sequencing; Co-Transcriptome
C9U


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-F22


title: Pregnant_control_uterine_GBS_C7U

description:
Dual RNA-sequencing; Co-Transcriptome
C7U


title: Pregnant_control_vaginal_GBS_C4V

description:
Dual RNA-sequencing; Co-Transcriptome
C4V


title: Pregnant_control_uterine_GBS_C4U

description:
Dual RNA-sequencing; Co-Transcriptome
C4U


title: Pregnant_control_vaginal_GBS_C2V

description:
Dual RNA-sequencing; Co-Transcriptome
C2V


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-G9


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-E9


title: genomic DNA of peripheral blood of sample 4012_1 at day 28

type: genomic

city: Research Triangle Park

first: Xuting

last: Wang

state: NC

address: 111 TW Alexander Dr

institute: NIEHS/NIH

description: nonBPD peripheral blood sample at day 28

hyb_protocol: Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC Beadchips using standard Illumina protocol

scan_protocol: Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting

data_processing:
The raw IDAT files were read into R with the minfi package, the data was preprocessed with background and dye bias correction using the preprocessNoob method. The champ.runCombat function in ChAMP package was used to do batch ("Sentrix_ID" and "Sentrix_Position") correction on methylation array data. Prior to normalization, DNA methylation data were filtered based on the following quality control criteria, exclusion of:  arrays having more than 5% failed probes (1 array); all CpG probes on the X and Y chromosomes; and any probes containing single-nucleotide polymorphism with a minor allele frequency ≥ 1% (in EUR population of the 1000 Genomes Project) within 5 nucleotides to the CpG site. We also removed probes reported to hybridize to one or more non-target sites in the genome. There were 775,201 CpG probes remaining after exclusions.
Average Beta

label: Cy5 and Cy3

label_protocol: 100 to 500 ng of DNA was bisulfite converted using the EZ-DNA Methylation kit (Zymo Research)

extract_protocol: Blood samples were collected at birth in PAXgene reagent (Qiagen Inc., Valencia, CA) and snap frozen at -80°C. Samples were processed with PAXgene Blood miRNA Kit (PreAnalytix/Qiagen).  For DNA isolation, the isopropanol precipitants were loaded into the DNeasy Mini spin columns (DNeasy Blood & Tissue Kit, Qiagen). All extraction steps followed the manufacturer’s procedure.

value: nonBPD


title: genomic DNA of peripheral blood of sample 4009_1 at day 28


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-E10


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-D9


title: genomic DNA of peripheral blood of sample 4006_2 at day 28


title: genomic DNA of peripheral blood of sample 4002_1 at day 28


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-D21


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-D22


title: genomic DNA of peripheral blood of sample 3011_2 at day 28


title: genomic DNA of peripheral blood of sample 3010_2 at day 14

description: nonBPD peripheral blood sample at day 14


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-C9


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-D10


title: genomic DNA of peripheral blood of sample 3010_1 at day 14


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-C22


title: genomic DNA of peripheral blood of sample 3008_1 at day 28


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-C21


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-F21


title: genomic DNA of peripheral blood of sample 3009_3 at day 28


title: genomic DNA of peripheral blood of sample 3002_1 at day 28


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-B9


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-F10


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-C10


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-E22


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-E21


title: Pregnant_control_uterine_GBS_C2U

description:
Dual RNA-sequencing; Co-Transcriptome
C2U


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-B21


title: genomic DNA of peripheral blood of sample 2026_2 at day 28


title: genomic DNA of peripheral blood of sample 2023_1 at day 28


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-B22


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-B10


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-A9


title: genomic DNA of peripheral blood of sample 4006_1 at day 28


title: genomic DNA of peripheral blood of sample 2019_1 at day 28


title: genomic DNA of peripheral blood of sample 2015_1 at day 28


title: genomic DNA of peripheral blood of sample 2021_1 at day 28


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-A21


title: genomic DNA of peripheral blood of sample 2013_1 at day 28


title: genomic DNA of peripheral blood of sample 2009_1 at day 28


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-A22


title: genomic DNA of peripheral blood of sample 2011_1 at day 28


title: genomic DNA of peripheral blood of sample 2005_1 at day 28


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-5-C23-A10


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-4-C23-P8


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-4-C23-P20


title: genomic DNA of peripheral blood of sample 1038_1 at day 28


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-4-C23-P19


title: genomic DNA of peripheral blood of sample 3017_1 at day 28

description: BPD peripheral blood sample at day 28

value: BPD


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-4-C23-P7


title: genomic DNA of peripheral blood of sample 1035_1 at day 28


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-4-C23-O7


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-4-C23-O8


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-4-C23-O20


title: genomic DNA of peripheral blood of sample 3016_1 at day 28


title: genomic DNA of peripheral blood of sample 4013_1 at day 28


title: genomic DNA of peripheral blood of sample 1031_1 at day 28


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-4-C23-N7


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-4-C23-N8


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-4-C23-O19


title: genomic DNA of peripheral blood of sample 1025_1 at day 28


title: genomic DNA of peripheral blood of sample 1023_1 at day 28


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-4-C23-N19


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-4-C23-M8


title: genomic DNA of peripheral blood of sample 1011_1 at day 28


title: HBA_220322_H1930001_CX46_SEP_3C_1_P5-4-C23-M7


title: genomic DNA of peripheral blood of sample 1006_1 at day 28


title: genomic DNA of peripheral blood of sample 1005_1 at day 28