title: TF ChIP-seq from HepG2 (ENCLB818RZX)

description:
https://www.encodeproject.org/experiments/ENCSR979KHU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR979KHU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR800SRA
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB818RZX
fragmentation methods: sonication (generic)

value: child

value: 15 year

value: Richard Myers, HAIB

value: ENCBS980ERK at ENCODE; https://www.encodeproject.org/ENCBS980ERK/


title: 06 dpi, strain Wuhan, batch 27, donor 18224 [ALI-SARScov-1-rep2-27]

status: Public on May 02 2023

type: SRA

city: Farmington

first: Carolyn

last: Paisie

state: CT

address: 10 Discovery Dr

country: USA

institute: The Jackson Laboratory for Genomic Medicine

library_source: transcriptomic

data_processing:
QC with FASTQC and MultiQC
Trimming with bbduk on quality (20) and min length (11bp) and rRNA removal
Mapping to SARS-CoV2 (different depending on the strain) genome and hg38 with bowtie
Calculating counts with RSEM
Deifferential Expression analysis with DESEQ2, batch correction with svaseq
Assembly: hg38/SARS-CoV2 genomes
Supplementary files format and content: tab-delimited text files include counts, TPMs and FPKMs produced by RSEM

molecule: total RNA

organism: Homo sapiens

source_name: primary human broncho-alveolar epithelia

growth_protocol: Pneumacult-Ex Plus Medium containing the ROCK inhibitor Y-27632 until confluence (8-10 days). ALI differentiation in Pneumacult-ALI Medium (STEMCELL) containing the ROCK inhibitor Y-27632 (5-7 days). Pneumacult-ALI Medium (STEMCELL) without ROCK inhibitor Y-27632 (~28 days) and removal of the media at apical side (air-lift).

extract_protocol:
Total RNA was isolated using Direct-zol RNA MicroPrep kits (zymo research) following the manufacturer’s protocols
cDNA libraries were prepared with polyA mRNA selection and Kapa Stranded mRNA-Seq Library Prep kit (Kapa Biosystems) according to the manufacturer’s instructions. Paired-end sequencing (2 × 150 bp) of stranded total RNA libraries was performed in Illumina Novaseq.

treatment_protocol:
Primary lung-organoid derived ALI was washed three times with PBS. Viruses were diluted in 1X PBS for a final concentration of 10^5PFU per ALI for SARS-CoV-2 infections and spread out on apical side.
Control (Mock-infected, media without virus) and SARS-CoV-2 (USA/WA1-2020, Wuhan-like), Beta (B.1.351), Delta (B.1.617.2) and Omicron (B.1.1.529, BA.1) variants

tag: donor

tag: timepoint

tag: virus

value: Wuhan

tag: batch

tag: cell type


title: TF ChIP-seq from HepG2 (ENCLB647YTL)

status: Public on Apr 30 2023

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR978DQT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR978DQT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR315QCW
encode release date: 2022-09-30
lab: Richard Myers, HAIB
library encode accession: ENCLB647YTL
fragmentation methods: sonication (generic)

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZHX1

tag: antibody

tag: line

value: cell line

tag: biosample encode accession

tag: Sex

value: male

tag: health state

value: hepatocellular carcinoma

tag: dev stage

tag: age

tag: lab

tag: source

value: Richard Myers

tag: link

value: ENCBS251KRE at ENCODE; https://www.encodeproject.org/ENCBS251KRE/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB269CRO)

description:
https://www.encodeproject.org/experiments/ENCSR978DQT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR978DQT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR315QCW
encode release date: 2022-09-30
lab: Richard Myers, HAIB
library encode accession: ENCLB269CRO
fragmentation methods: sonication (generic)

value: ENCBS058KMV at ENCODE; https://www.encodeproject.org/ENCBS058KMV/


title: TF ChIP-seq from K562 (ENCLB100HWH)

description:
https://www.encodeproject.org/experiments/ENCSR976MXN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR976MXN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR385DOV
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB100HWH
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF317

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS784FQX at ENCODE; https://www.encodeproject.org/ENCBS784FQX/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB123DSU)

description:
https://www.encodeproject.org/experiments/ENCSR977FRK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR977FRK
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615JHA
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB123DSU
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF563

value: child

value: 15 year

value: ENCBS761BHG at ENCODE; https://www.encodeproject.org/ENCBS761BHG/


title: TF ChIP-seq from HepG2 (ENCLB248TYL)

description:
https://www.encodeproject.org/experiments/ENCSR977FRK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR977FRK
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615JHA
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB248TYL
fragmentation methods: sonication (generic)

value: Richard Myers, HAIB

value: ENCBS309OLZ at ENCODE; https://www.encodeproject.org/ENCBS309OLZ/


title: TF ChIP-seq from HepG2 (ENCLB339OWI)

description:
https://www.encodeproject.org/experiments/ENCSR965SHB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR965SHB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR720MOD
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB339OWI
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ATF4

value: cell line

value: male

value: ENCBS819BTV at ENCODE; https://www.encodeproject.org/ENCBS819BTV/


title: TF ChIP-seq from K562 (ENCLB713HTV)

description:
https://www.encodeproject.org/experiments/ENCSR976MXN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR976MXN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR385DOV
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB713HTV
fragmentation methods: sonication (generic)

value: Richard Myers

value: ENCBS513HPC at ENCODE; https://www.encodeproject.org/ENCBS513HPC/


title: TF ChIP-seq from HepG2 (ENCLB630UCR)

description:
https://www.encodeproject.org/experiments/ENCSR243OKN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR243OKN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB630UCR
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens MED8

value: hepatocellular carcinoma

value: ENCBS540DAH at ENCODE; https://www.encodeproject.org/ENCBS540DAH/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB394USD)

description:
https://www.encodeproject.org/experiments/ENCSR243OKN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR243OKN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB394USD
fragmentation methods: sonication (generic)

value: ENCBS092DZM at ENCODE; https://www.encodeproject.org/ENCBS092DZM/


title: TF ChIP-seq from HepG2 (ENCLB076FRY)

description:
https://www.encodeproject.org/experiments/ENCSR965SHB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR965SHB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR720MOD
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB076FRY
fragmentation methods: sonication (generic)

value: ENCBS536SLI at ENCODE; https://www.encodeproject.org/ENCBS536SLI/


title: TF ChIP-seq from WTC11 (ENCLB304RAN)

description:
https://www.encodeproject.org/experiments/ENCSR963CCJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR963CCJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR421QOH
encode release date: 2023-01-10
lab: Richard Myers, HAIB
library encode accession: ENCLB304RAN
fragmentation methods: sonication (generic)

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ARID4B

value: adult

value: 30 year

value: ENCBS045WGX at ENCODE; https://www.encodeproject.org/ENCBS045WGX/

value: derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: TF ChIP-seq from HepG2 (ENCLB664YTQ)

description:
https://www.encodeproject.org/experiments/ENCSR976KGR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR976KGR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR542TKO
encode release date: 2022-10-03
lab: Richard Myers, HAIB
library encode accession: ENCLB664YTQ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens CCDC6

value: child

value: 15 year

value: ENCBS681KCN at ENCODE; https://www.encodeproject.org/ENCBS681KCN/


title: TF ChIP-seq from WTC11 (ENCLB534DQL)

description:
https://www.encodeproject.org/experiments/ENCSR963CCJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR963CCJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR421QOH
encode release date: 2023-01-10
lab: Richard Myers, HAIB
library encode accession: ENCLB534DQL
fragmentation methods: sonication (generic)

value: cell line

value: Richard Myers, HAIB

value: ENCBS609KFP at ENCODE; https://www.encodeproject.org/ENCBS609KFP/


title: TF ChIP-seq from HepG2 (ENCLB119LNA)

description:
https://www.encodeproject.org/experiments/ENCSR238XDV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR238XDV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR578XKJ
encode release date: 2022-08-31
lab: Richard Myers, HAIB
library encode accession: ENCLB119LNA
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens BORCS8

value: male

value: Richard Myers

value: ENCBS728QGP at ENCODE; https://www.encodeproject.org/ENCBS728QGP/


title: TF ChIP-seq from HepG2 (ENCLB249CFJ)

description:
https://www.encodeproject.org/experiments/ENCSR238XDV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR238XDV
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR578XKJ
encode release date: 2022-08-31
lab: Richard Myers, HAIB
library encode accession: ENCLB249CFJ
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: ENCBS866IIM at ENCODE; https://www.encodeproject.org/ENCBS866IIM/


title: TF ChIP-seq from HepG2 (ENCLB091DPE)

description:
https://www.encodeproject.org/experiments/ENCSR539PMH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR539PMH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR555EMB, ENCSR743HNM
encode release date: 2022-07-15
lab: Richard Myers, HAIB
library encode accession: ENCLB091DPE
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens CENPBD1

value: ENCBS961QNJ at ENCODE; https://www.encodeproject.org/ENCBS961QNJ/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB039SKA)

description:
https://www.encodeproject.org/experiments/ENCSR539PMH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR539PMH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR555EMB, ENCSR743HNM
encode release date: 2022-07-15
lab: Richard Myers, HAIB
library encode accession: ENCLB039SKA
fragmentation methods: sonication (generic)

value: ENCBS229PES at ENCODE; https://www.encodeproject.org/ENCBS229PES/


title: TF ChIP-seq from WTC11 (ENCLB519XSV)

description:
https://www.encodeproject.org/experiments/ENCSR962BEI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR962BEI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR783VJL
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB519XSV
fragmentation methods: sonication (generic)

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB21

value: adult

value: 30 year

value: ENCBS692SFB at ENCODE; https://www.encodeproject.org/ENCBS692SFB/


title: TF ChIP-seq from HepG2 (ENCLB934NSW)

description:
https://www.encodeproject.org/experiments/ENCSR237OGW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR237OGW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB934NSW
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens CREBL2

value: child

value: ENCBS441PJJ at ENCODE; https://www.encodeproject.org/ENCBS441PJJ/


title: TF ChIP-seq from HepG2 (ENCLB879TVT)

description:
https://www.encodeproject.org/experiments/ENCSR237OGW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR237OGW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR019ZGX
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB879TVT
fragmentation methods: sonication (generic)

value: 15 year

value: ENCBS904IAN at ENCODE; https://www.encodeproject.org/ENCBS904IAN/


title: TF ChIP-seq from HepG2 (ENCLB624OCG)

description:
https://www.encodeproject.org/experiments/ENCSR537FDJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR537FDJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2022-09-13
lab: Richard Myers, HAIB
library encode accession: ENCLB624OCG
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ETV4

value: cell line

value: Richard Myers, HAIB

value: ENCBS955RMZ at ENCODE; https://www.encodeproject.org/ENCBS955RMZ/


title: TF ChIP-seq from WTC11 (ENCLB466KAL)

description:
https://www.encodeproject.org/experiments/ENCSR962BEI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR962BEI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR783VJL
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB466KAL
fragmentation methods: sonication (generic)

value: male

value: Richard Myers

value: ENCBS292RSQ at ENCODE; https://www.encodeproject.org/ENCBS292RSQ/

value: derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: TF ChIP-seq from HepG2 (ENCLB724ZFY)

description:
https://www.encodeproject.org/experiments/ENCSR537FDJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR537FDJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2022-09-13
lab: Richard Myers, HAIB
library encode accession: ENCLB724ZFY
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: ENCBS795ZEO at ENCODE; https://www.encodeproject.org/ENCBS795ZEO/


title: TF ChIP-seq from HepG2 (ENCLB446SBP)

description:
https://www.encodeproject.org/experiments/ENCSR231NMZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR231NMZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB446SBP
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF567

value: ENCBS044WAC at ENCODE; https://www.encodeproject.org/ENCBS044WAC/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB192CMZ)

description:
https://www.encodeproject.org/experiments/ENCSR957LTN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR957LTN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR578XKJ
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB192CMZ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF146

value: ENCBS806HHX at ENCODE; https://www.encodeproject.org/ENCBS806HHX/


title: TF ChIP-seq from HepG2 (ENCLB029QIK)

description:
https://www.encodeproject.org/experiments/ENCSR231NMZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR231NMZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730QNM
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB029QIK
fragmentation methods: sonication (generic)

value: ENCBS209MXY at ENCODE; https://www.encodeproject.org/ENCBS209MXY/


title: TF ChIP-seq from HepG2 (ENCLB904WEH)

description:
https://www.encodeproject.org/experiments/ENCSR957LTN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR957LTN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR578XKJ
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB904WEH
fragmentation methods: sonication (generic)

value: child

value: ENCBS647XAH at ENCODE; https://www.encodeproject.org/ENCBS647XAH/


title: TF ChIP-seq from HepG2 (ENCLB152ZYD)

description:
https://www.encodeproject.org/experiments/ENCSR976KGR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR976KGR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR542TKO
encode release date: 2022-10-03
lab: Richard Myers, HAIB
library encode accession: ENCLB152ZYD
fragmentation methods: sonication (generic)

value: 15 year

value: ENCBS640IPH at ENCODE; https://www.encodeproject.org/ENCBS640IPH/


title: TF ChIP-seq from WTC11 (ENCLB839IQZ)

description:
https://www.encodeproject.org/experiments/ENCSR229QAN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR229QAN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR783VJL
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB839IQZ
fragmentation methods: sonication (generic)

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR targeting H. sapiens USF2

value: cell line

value: adult

value: 30 year

value: ENCBS735TBJ at ENCODE; https://www.encodeproject.org/ENCBS735TBJ/


title: TF ChIP-seq from WTC11 (ENCLB053GHB)

description:
https://www.encodeproject.org/experiments/ENCSR229QAN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR229QAN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR783VJL
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB053GHB
fragmentation methods: sonication (generic)

value: male

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS008DPE at ENCODE; https://www.encodeproject.org/ENCBS008DPE/


title: TF ChIP-seq from K562 (ENCLB043USA)

description:
https://www.encodeproject.org/experiments/ENCSR955LXM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR955LXM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR859ZNT
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB043USA
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB33

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS050XOP at ENCODE; https://www.encodeproject.org/ENCBS050XOP/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB451JHA)

description:
https://www.encodeproject.org/experiments/ENCSR229KXQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR229KXQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR144DXT
encode release date: 2023-01-10
lab: Richard Myers, HAIB
library encode accession: ENCLB451JHA
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF282

value: ENCBS873YSA at ENCODE; https://www.encodeproject.org/ENCBS873YSA/


title: TF ChIP-seq from HepG2 (ENCLB384LYF)

description:
https://www.encodeproject.org/experiments/ENCSR225UTR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR225UTR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR578XKJ
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB384LYF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens IRX3

value: hepatocellular carcinoma

value: child

value: ENCBS588RXY at ENCODE; https://www.encodeproject.org/ENCBS588RXY/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB599ICQ)

description:
https://www.encodeproject.org/experiments/ENCSR523RGJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR523RGJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU, ENCSR020QUJ
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB599ICQ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF704

value: cell line

value: 15 year

value: ENCBS764EMD at ENCODE; https://www.encodeproject.org/ENCBS764EMD/


title: TF ChIP-seq from HepG2 (ENCLB369HQG)

description:
https://www.encodeproject.org/experiments/ENCSR225UTR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR225UTR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR578XKJ
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB369HQG
fragmentation methods: sonication (generic)

value: male

value: ENCBS363QQW at ENCODE; https://www.encodeproject.org/ENCBS363QQW/


title: TF ChIP-seq from K562 (ENCLB764AFU)

description:
https://www.encodeproject.org/experiments/ENCSR955LXM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR955LXM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR859ZNT
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB764AFU
fragmentation methods: sonication (generic)

value: adult

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS663HCB at ENCODE; https://www.encodeproject.org/ENCBS663HCB/


title: TF ChIP-seq from K562 (ENCLB450GIB)

description:
https://www.encodeproject.org/experiments/ENCSR229KXQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR229KXQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR144DXT
encode release date: 2023-01-10
lab: Richard Myers, HAIB
library encode accession: ENCLB450GIB
fragmentation methods: sonication (generic)

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS550ALV at ENCODE; https://www.encodeproject.org/ENCBS550ALV/


title: TF ChIP-seq from HepG2 (ENCLB397UJW)

description:
https://www.encodeproject.org/experiments/ENCSR523RGJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR523RGJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR042HRU, ENCSR020QUJ
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB397UJW
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: ENCBS368RNP at ENCODE; https://www.encodeproject.org/ENCBS368RNP/


title: TF ChIP-seq from K562 (ENCLB865GIS)

description:
https://www.encodeproject.org/experiments/ENCSR225OGU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR225OGU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615INN
encode release date: 2022-08-23
lab: Richard Myers, HAIB
library encode accession: ENCLB865GIS
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ERF

value: ERF

value: ENCBS026MKE at ENCODE; https://www.encodeproject.org/ENCBS026MKE/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB614FJW)

description:
https://www.encodeproject.org/experiments/ENCSR225OGU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR225OGU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615INN
encode release date: 2022-08-23
lab: Richard Myers, HAIB
library encode accession: ENCLB614FJW
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS835ZMD at ENCODE; https://www.encodeproject.org/ENCBS835ZMD/


title: TF ChIP-seq from WTC11 (ENCLB819SFK)

description:
https://www.encodeproject.org/experiments/ENCSR513WUJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR513WUJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR828IIG
encode release date: 2022-09-30
lab: Richard Myers, HAIB
library encode accession: ENCLB819SFK
fragmentation methods: sonication (generic)

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR targeting H. sapiens SIX4

value: male

value: 30 year

value: ENCBS944PMI at ENCODE; https://www.encodeproject.org/ENCBS944PMI/

value: derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: TF ChIP-seq from WTC11 (ENCLB868TLL)

description:
https://www.encodeproject.org/experiments/ENCSR513WUJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR513WUJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR828IIG
encode release date: 2022-09-30
lab: Richard Myers, HAIB
library encode accession: ENCLB868TLL
fragmentation methods: sonication (generic)

value: adult

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS982YED at ENCODE; https://www.encodeproject.org/ENCBS982YED/


title: TF ChIP-seq from K562 (ENCLB222LZI)

description:
https://www.encodeproject.org/experiments/ENCSR516SWI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR516SWI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR188MIS
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB222LZI
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens NR2C2

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS609JGP at ENCODE; https://www.encodeproject.org/ENCBS609JGP/


title: TF ChIP-seq from glutamatergic neuron (ENCLB294CAL)

description:
https://www.encodeproject.org/experiments/ENCSR950CIR/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-FOSL1 ChIP-seq on human WTC11
experiment encode accession: ENCSR950CIR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR548RFU
encode release date: 2022-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB294CAL
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens male adult (30 years) glutamatergic neuron in vitro differentiated cells genetically modified (insertion) using CRISPR targeting H. sapiens FOSL1, genetically modified (insertion) using TALEN inserting Mouse Neurog2 originated from WCT11

value: glutamatergic neuron

value: in vitro differentiated cells

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS267ZCD at ENCODE; https://www.encodeproject.org/ENCBS267ZCD/


title: TF ChIP-seq from glutamatergic neuron (ENCLB722LNL)

description:
https://www.encodeproject.org/experiments/ENCSR950CIR/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-FOSL1 ChIP-seq on human WTC11
experiment encode accession: ENCSR950CIR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR548RFU
encode release date: 2022-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB722LNL
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: male

value: ENCBS403FDE at ENCODE; https://www.encodeproject.org/ENCBS403FDE/


title: TF ChIP-seq from HepG2 (ENCLB247TTZ)

description:
https://www.encodeproject.org/experiments/ENCSR946BKU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR946BKU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR533ASI
encode release date: 2022-10-03
lab: Richard Myers, HAIB
library encode accession: ENCLB247TTZ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens NR1H2

value: cell line

value: hepatocellular carcinoma

value: child

value: 15 year

value: ENCBS011HAR at ENCODE; https://www.encodeproject.org/ENCBS011HAR/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB363RQO)

description:
https://www.encodeproject.org/experiments/ENCSR216GKQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR216GKQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR578XKJ
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB363RQO
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN5A

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS731DNL at ENCODE; https://www.encodeproject.org/ENCBS731DNL/


title: TF ChIP-seq from HepG2 (ENCLB770UXQ)

description:
https://www.encodeproject.org/experiments/ENCSR216GKQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR216GKQ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR578XKJ
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB770UXQ
fragmentation methods: sonication (generic)

value: ENCBS865NKE at ENCODE; https://www.encodeproject.org/ENCBS865NKE/


title: TF ChIP-seq from HepG2 (ENCLB221KVW)

description:
https://www.encodeproject.org/experiments/ENCSR512JVC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR512JVC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR800SRA
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB221KVW
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF724

value: ENCBS485JCX at ENCODE; https://www.encodeproject.org/ENCBS485JCX/


title: TF ChIP-seq from WTC11 (ENCLB676YBL)

description:
https://www.encodeproject.org/experiments/ENCSR214RUE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR214RUE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR421QOH
encode release date: 2023-01-24
lab: Richard Myers, HAIB
library encode accession: ENCLB676YBL
fragmentation methods: sonication (generic)

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF219

value: adult

value: 30 year

value: ENCBS797PRA at ENCODE; https://www.encodeproject.org/ENCBS797PRA/

value: derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: TF ChIP-seq from HepG2 (ENCLB064KMW)

description:
https://www.encodeproject.org/experiments/ENCSR946BKU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR946BKU
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR533ASI
encode release date: 2022-10-03
lab: Richard Myers, HAIB
library encode accession: ENCLB064KMW
fragmentation methods: sonication (generic)

value: male

value: ENCBS346RKS at ENCODE; https://www.encodeproject.org/ENCBS346RKS/


title: TF ChIP-seq from HepG2 (ENCLB615ZWB)

description:
https://www.encodeproject.org/experiments/ENCSR512JVC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR512JVC
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR800SRA
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB615ZWB
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS670XPR at ENCODE; https://www.encodeproject.org/ENCBS670XPR/


title: TF ChIP-seq from WTC11 (ENCLB126OBE)

description:
https://www.encodeproject.org/experiments/ENCSR214RUE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR214RUE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR421QOH
encode release date: 2023-01-24
lab: Richard Myers, HAIB
library encode accession: ENCLB126OBE
fragmentation methods: sonication (generic)

value: ENCBS924UEL at ENCODE; https://www.encodeproject.org/ENCBS924UEL/


title: TF ChIP-seq from WTC11 (ENCLB863LDH)

description:
https://www.encodeproject.org/experiments/ENCSR508NBY/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-TOX4 ChIP-seq on human WTC11
experiment encode accession: ENCSR508NBY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR178OJR
encode release date: 2022-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB863LDH
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR targeting H. sapiens TOX4, genetically modified (insertion) using TALEN inserting M. musculus Neurog2

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS643NIT at ENCODE; https://www.encodeproject.org/ENCBS643NIT/


title: TF ChIP-seq from WTC11 (ENCLB305SMJ)

description:
https://www.encodeproject.org/experiments/ENCSR508NBY/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-TOX4 ChIP-seq on human WTC11
experiment encode accession: ENCSR508NBY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR178OJR
encode release date: 2022-08-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB305SMJ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: ENCBS662DKH at ENCODE; https://www.encodeproject.org/ENCBS662DKH/


title: TF ChIP-seq from WTC11 (ENCLB057GKS)

description:
https://www.encodeproject.org/experiments/ENCSR943MQH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR943MQH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR678WJT
encode release date: 2022-09-14
lab: Richard Myers, HAIB
library encode accession: ENCLB057GKS
fragmentation methods: sonication (generic)

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB33

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS754MZN at ENCODE; https://www.encodeproject.org/ENCBS754MZN/


title: TF ChIP-seq from WTC11 (ENCLB648GAY)

description:
https://www.encodeproject.org/experiments/ENCSR943MQH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR943MQH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR678WJT
encode release date: 2022-09-14
lab: Richard Myers, HAIB
library encode accession: ENCLB648GAY
fragmentation methods: sonication (generic)

value: ENCBS181KYB at ENCODE; https://www.encodeproject.org/ENCBS181KYB/


title: TF ChIP-seq from HepG2 (ENCLB800YBC)

description:
https://www.encodeproject.org/experiments/ENCSR211BDR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR211BDR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR720MOD
encode release date: 2022-09-30
lab: Richard Myers, HAIB
library encode accession: ENCLB800YBC
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens JDP2

value: hepatocellular carcinoma

value: child

value: 15 year

value: ENCBS234YRZ at ENCODE; https://www.encodeproject.org/ENCBS234YRZ/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from WTC11 (ENCLB294SKO)

description:
https://www.encodeproject.org/experiments/ENCSR507RVF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR507RVF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730ATD
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB294SKO
fragmentation methods: sonication (generic)

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4

value: male

value: adult

value: 30 year

value: ENCBS585YJG at ENCODE; https://www.encodeproject.org/ENCBS585YJG/

value: derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: TF ChIP-seq from HepG2 (ENCLB124RCP)

description:
https://www.encodeproject.org/experiments/ENCSR211BDR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR211BDR
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR720MOD
encode release date: 2022-09-30
lab: Richard Myers, HAIB
library encode accession: ENCLB124RCP
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS900SXN at ENCODE; https://www.encodeproject.org/ENCBS900SXN/


title: TF ChIP-seq from HepG2 (ENCLB707VGQ)

description:
https://www.encodeproject.org/experiments/ENCSR210DDA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR210DDA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR315QCW
encode release date: 2022-08-23
lab: Richard Myers, HAIB
library encode accession: ENCLB707VGQ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN21

value: ENCBS318VGT at ENCODE; https://www.encodeproject.org/ENCBS318VGT/


title: TF ChIP-seq from HepG2 (ENCLB335KXC)

description:
https://www.encodeproject.org/experiments/ENCSR507BRS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR507BRS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR720MOD
encode release date: 2022-08-31
lab: Richard Myers, HAIB
library encode accession: ENCLB335KXC
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens BATF2

value: Richard Myers, HAIB

value: ENCBS497QRS at ENCODE; https://www.encodeproject.org/ENCBS497QRS/


title: TF ChIP-seq from HepG2 (ENCLB022EJW)

description:
https://www.encodeproject.org/experiments/ENCSR507BRS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR507BRS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR720MOD
encode release date: 2022-08-31
lab: Richard Myers, HAIB
library encode accession: ENCLB022EJW
fragmentation methods: sonication (generic)

value: Richard Myers

value: ENCBS604GRP at ENCODE; https://www.encodeproject.org/ENCBS604GRP/


title: TF ChIP-seq from HepG2 (ENCLB158YIL)

description:
https://www.encodeproject.org/experiments/ENCSR210DDA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR210DDA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR315QCW
encode release date: 2022-08-23
lab: Richard Myers, HAIB
library encode accession: ENCLB158YIL
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: ENCBS238UPQ at ENCODE; https://www.encodeproject.org/ENCBS238UPQ/


title: TF ChIP-seq from HepG2 (ENCLB502HMO)

description:
https://www.encodeproject.org/experiments/ENCSR204ZIN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR204ZIN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR578XKJ
encode release date: 2023-01-24
lab: Richard Myers, HAIB
library encode accession: ENCLB502HMO
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens TOPORS

value: TOPORS

value: child

value: 15 year

value: ENCBS663TZB at ENCODE; https://www.encodeproject.org/ENCBS663TZB/


title: TF ChIP-seq from K562 (ENCLB113IWI)

description:
https://www.encodeproject.org/experiments/ENCSR516SWI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR516SWI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR188MIS
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB113IWI
fragmentation methods: sonication (generic)

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS065DIZ at ENCODE; https://www.encodeproject.org/ENCBS065DIZ/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB743OOV)

description:
https://www.encodeproject.org/experiments/ENCSR204ZIN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR204ZIN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR578XKJ
encode release date: 2023-01-24
lab: Richard Myers, HAIB
library encode accession: ENCLB743OOV
fragmentation methods: sonication (generic)

value: cell line

value: male

value: ENCBS047IAX at ENCODE; https://www.encodeproject.org/ENCBS047IAX/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB868USH)

description:
https://www.encodeproject.org/experiments/ENCSR203UQM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR203UQM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR800SRA
encode release date: 2023-01-20
lab: Richard Myers, HAIB
library encode accession: ENCLB868USH
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens RBSN

value: Richard Myers, HAIB

value: Richard Myers

value: ENCBS639FVC at ENCODE; https://www.encodeproject.org/ENCBS639FVC/


title: TF ChIP-seq from HepG2 (ENCLB740QAH)

description:
https://www.encodeproject.org/experiments/ENCSR941WVJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR941WVJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR578XKJ
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB740QAH
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens FBXL19

value: hepatocellular carcinoma

value: ENCBS792WWQ at ENCODE; https://www.encodeproject.org/ENCBS792WWQ/


title: TF ChIP-seq from HepG2 (ENCLB954FGY)

description:
https://www.encodeproject.org/experiments/ENCSR203UQM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR203UQM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR800SRA
encode release date: 2023-01-20
lab: Richard Myers, HAIB
library encode accession: ENCLB954FGY
fragmentation methods: sonication (generic)

value: child

value: 15 year

value: ENCBS296KNF at ENCODE; https://www.encodeproject.org/ENCBS296KNF/


title: TF ChIP-seq from HepG2 (ENCLB346FTE)

description:
https://www.encodeproject.org/experiments/ENCSR505ELD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR505ELD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR005ZFP
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB346FTE
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens NPAS2

value: ENCBS311PKC at ENCODE; https://www.encodeproject.org/ENCBS311PKC/


title: TF ChIP-seq from K562 (ENCLB796URX)

description:
https://www.encodeproject.org/experiments/ENCSR940PYZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR940PYZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR188MIS
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB796URX
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF609

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS690ADO at ENCODE; https://www.encodeproject.org/ENCBS690ADO/


title: TF ChIP-seq from HepG2 (ENCLB239CIQ)

description:
https://www.encodeproject.org/experiments/ENCSR941WVJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR941WVJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR578XKJ
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB239CIQ
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS234DZS at ENCODE; https://www.encodeproject.org/ENCBS234DZS/


title: TF ChIP-seq from HepG2 (ENCLB420JJQ)

description:
https://www.encodeproject.org/experiments/ENCSR505ELD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR505ELD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR005ZFP
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB420JJQ
fragmentation methods: sonication (generic)

value: male

value: ENCBS131IPK at ENCODE; https://www.encodeproject.org/ENCBS131IPK/


title: TF ChIP-seq from K562 (ENCLB261GLB)

description:
https://www.encodeproject.org/experiments/ENCSR498JCG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR498JCG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR080NUS
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB261GLB
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ELF4

value: 53 year

value: Richard Myers, HAIB

value: ENCBS807DYT at ENCODE; https://www.encodeproject.org/ENCBS807DYT/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB499QCM)

description:
https://www.encodeproject.org/experiments/ENCSR940PYZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR940PYZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR188MIS
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB499QCM
fragmentation methods: sonication (generic)

value: Richard Myers

value: ENCBS815PKE at ENCODE; https://www.encodeproject.org/ENCBS815PKE/


title: TF ChIP-seq from K562 (ENCLB426JFJ)

description:
https://www.encodeproject.org/experiments/ENCSR498JCG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR498JCG
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR080NUS
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB426JFJ
fragmentation methods: sonication (generic)

value: ENCBS994HXM at ENCODE; https://www.encodeproject.org/ENCBS994HXM/


title: TF ChIP-seq from WTC11 (ENCLB791HDM)

description:
https://www.encodeproject.org/experiments/ENCSR203PCF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR203PCF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730ATD
encode release date: 2023-01-10
lab: Richard Myers, HAIB
library encode accession: ENCLB791HDM
fragmentation methods: sonication (generic)

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF121

value: 30 year

value: ENCBS732AQT at ENCODE; https://www.encodeproject.org/ENCBS732AQT/

value: derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: TF ChIP-seq from HepG2 (ENCLB649JYC)

description:
https://www.encodeproject.org/experiments/ENCSR202OLE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR202OLE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR479INP
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB649JYC
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM4

value: hepatocellular carcinoma

value: child

value: 15 year

value: ENCBS389QWQ at ENCODE; https://www.encodeproject.org/ENCBS389QWQ/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB021DIO)

description:
https://www.encodeproject.org/experiments/ENCSR494HMS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR494HMS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR315QCW
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB021DIO
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens AKAP8L

value: cell line

value: male

value: ENCBS561CWB at ENCODE; https://www.encodeproject.org/ENCBS561CWB/


title: TF ChIP-seq from HepG2 (ENCLB917XGG)

description:
https://www.encodeproject.org/experiments/ENCSR938SDM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR938SDM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR720MOD
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB917XGG
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZC3H13

value: Richard Myers, HAIB

value: ENCBS451TEW at ENCODE; https://www.encodeproject.org/ENCBS451TEW/


title: TF ChIP-seq from K562 (ENCLB414UUB)

description:
https://www.encodeproject.org/experiments/ENCSR201DCF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR201DCF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR188MIS
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB414UUB
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZFP91

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS289GHP at ENCODE; https://www.encodeproject.org/ENCBS289GHP/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB165FWJ)

description:
https://www.encodeproject.org/experiments/ENCSR938SDM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR938SDM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR720MOD
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB165FWJ
fragmentation methods: sonication (generic)

value: Richard Myers

value: ENCBS996YER at ENCODE; https://www.encodeproject.org/ENCBS996YER/


title: TF ChIP-seq from K562 (ENCLB571OED)

description:
https://www.encodeproject.org/experiments/ENCSR201DCF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR201DCF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR188MIS
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB571OED
fragmentation methods: sonication (generic)

value: ENCBS513JLN at ENCODE; https://www.encodeproject.org/ENCBS513JLN/


title: TF ChIP-seq from WTC11 (ENCLB962KJA)

description:
https://www.encodeproject.org/experiments/ENCSR507RVF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR507RVF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730ATD
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB962KJA
fragmentation methods: sonication (generic)

value: 30 year

value: ENCBS088WWJ at ENCODE; https://www.encodeproject.org/ENCBS088WWJ/

value: derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: TF ChIP-seq from K562 (ENCLB206FPQ)

description:
https://www.encodeproject.org/experiments/ENCSR493JTJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR493JTJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR859ZNT
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB206FPQ
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ETV6

value: cell line

value: ENCBS051ZKE at ENCODE; https://www.encodeproject.org/ENCBS051ZKE/


title: TF ChIP-seq from K562 (ENCLB346YVM)

description:
https://www.encodeproject.org/experiments/ENCSR493JTJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR493JTJ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR859ZNT
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB346YVM
fragmentation methods: sonication (generic)

value: ENCBS852TTL at ENCODE; https://www.encodeproject.org/ENCBS852TTL/


title: TF ChIP-seq from WTC11 (ENCLB246AIZ)

description:
https://www.encodeproject.org/experiments/ENCSR934WOF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR934WOF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR421QOH
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB246AIZ
fragmentation methods: sonication (generic)

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1

value: male

value: Richard Myers, HAIB

value: ENCBS635SQP at ENCODE; https://www.encodeproject.org/ENCBS635SQP/


title: TF ChIP-seq from WTC11 (ENCLB732SKE)

description:
https://www.encodeproject.org/experiments/ENCSR934WOF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR934WOF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR421QOH
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB732SKE
fragmentation methods: sonication (generic)

value: ENCBS964PBG at ENCODE; https://www.encodeproject.org/ENCBS964PBG/


title: TF ChIP-seq from HepG2 (ENCLB251JDL)

description:
https://www.encodeproject.org/experiments/ENCSR932BNN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR932BNN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR661ZUK
encode release date: 2023-01-10
lab: Richard Myers, HAIB
library encode accession: ENCLB251JDL
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ARID3A

value: hepatocellular carcinoma

value: child

value: 15 year

value: ENCBS815KUX at ENCODE; https://www.encodeproject.org/ENCBS815KUX/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB776TPS)

description:
https://www.encodeproject.org/experiments/ENCSR200AWS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR200AWS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR555EMB, ENCSR690IYP
encode release date: 2022-07-15
lab: Richard Myers, HAIB
library encode accession: ENCLB776TPS
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40

value: Richard Myers

value: ENCBS627ZHJ at ENCODE; https://www.encodeproject.org/ENCBS627ZHJ/


title: TF ChIP-seq from HepG2 (ENCLB556CPO)

description:
https://www.encodeproject.org/experiments/ENCSR932BNN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR932BNN
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR661ZUK
encode release date: 2023-01-10
lab: Richard Myers, HAIB
library encode accession: ENCLB556CPO
fragmentation methods: sonication (generic)

value: ENCBS029KYG at ENCODE; https://www.encodeproject.org/ENCBS029KYG/


title: TF ChIP-seq from WTC11 (ENCLB886KOD)

description:
https://www.encodeproject.org/experiments/ENCSR203PCF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR203PCF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR730ATD
encode release date: 2023-01-10
lab: Richard Myers, HAIB
library encode accession: ENCLB886KOD
fragmentation methods: sonication (generic)

value: adult

value: 30 year

value: ENCBS885KFH at ENCODE; https://www.encodeproject.org/ENCBS885KFH/


title: TF ChIP-seq from HepG2 (ENCLB119MBI)

description:
https://www.encodeproject.org/experiments/ENCSR200AWS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR200AWS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR555EMB, ENCSR690IYP
encode release date: 2022-07-15
lab: Richard Myers, HAIB
library encode accession: ENCLB119MBI
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS863UGX at ENCODE; https://www.encodeproject.org/ENCBS863UGX/


title: TF ChIP-seq from HepG2 (ENCLB361QYT)

description:
https://www.encodeproject.org/experiments/ENCSR482SWD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR482SWD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR800SRA
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB361QYT
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting MTERF2

value: male

value: ENCBS095PTA at ENCODE; https://www.encodeproject.org/ENCBS095PTA/


title: TF ChIP-seq from HepG2 (ENCLB978QMF)

description:
https://www.encodeproject.org/experiments/ENCSR494HMS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR494HMS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR315QCW
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB978QMF
fragmentation methods: sonication (generic)

value: Richard Myers, HAIB

value: ENCBS216DEK at ENCODE; https://www.encodeproject.org/ENCBS216DEK/


title: TF ChIP-seq from HepG2 (ENCLB910ZBY)

description:
https://www.encodeproject.org/experiments/ENCSR929KSH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR929KSH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR720MOD
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB910ZBY
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens SKIL

value: SKIL

value: hepatocellular carcinoma

value: ENCBS688SZW at ENCODE; https://www.encodeproject.org/ENCBS688SZW/


title: TF ChIP-seq from WTC11 (ENCLB251NOS)

description:
https://www.encodeproject.org/experiments/ENCSR199PXS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR199PXS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR428BNQ
encode release date: 2023-01-10
lab: Richard Myers, HAIB
library encode accession: ENCLB251NOS
fragmentation methods: sonication (generic)

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB43

value: ENCBS875YCW at ENCODE; https://www.encodeproject.org/ENCBS875YCW/

value: derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: TF ChIP-seq from HepG2 (ENCLB025MDT)

description:
https://www.encodeproject.org/experiments/ENCSR199MFT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR199MFT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR315QCW
encode release date: 2022-08-23
lab: Richard Myers, HAIB
library encode accession: ENCLB025MDT
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens FOXQ1

value: child

value: 15 year

value: Richard Myers

value: ENCBS071QSB at ENCODE; https://www.encodeproject.org/ENCBS071QSB/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB138SAO)

description:
https://www.encodeproject.org/experiments/ENCSR929KSH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR929KSH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR720MOD
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB138SAO
fragmentation methods: sonication (generic)

value: ENCBS640AQD at ENCODE; https://www.encodeproject.org/ENCBS640AQD/


title: TF ChIP-seq from HepG2 (ENCLB596NLC)

description:
https://www.encodeproject.org/experiments/ENCSR482SWD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR482SWD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR800SRA
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB596NLC
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS318NNM at ENCODE; https://www.encodeproject.org/ENCBS318NNM/


title: TF ChIP-seq from HepG2 (ENCLB342LVN)

description:
https://www.encodeproject.org/experiments/ENCSR202OLE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR202OLE
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR479INP
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB342LVN
fragmentation methods: sonication (generic)

value: male

value: ENCBS493NYQ at ENCODE; https://www.encodeproject.org/ENCBS493NYQ/


title: TF ChIP-seq from HepG2 (ENCLB838KDV)

description:
https://www.encodeproject.org/experiments/ENCSR478SKI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR478SKI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR578XKJ
encode release date: 2023-01-10
lab: Richard Myers, HAIB
library encode accession: ENCLB838KDV
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D1

value: Richard Myers, HAIB

value: ENCBS876JVR at ENCODE; https://www.encodeproject.org/ENCBS876JVR/


title: TF ChIP-seq from HepG2 (ENCLB977GYZ)

description:
https://www.encodeproject.org/experiments/ENCSR478ZYO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR478ZYO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR800SRA
encode release date: 2022-10-03
lab: Richard Myers, HAIB
library encode accession: ENCLB977GYZ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens CBX2

value: ENCBS295WGY at ENCODE; https://www.encodeproject.org/ENCBS295WGY/


title: TF ChIP-seq from WTC11 (ENCLB066XXE)

description:
https://www.encodeproject.org/experiments/ENCSR928BPP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR928BPP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR428BNQ
encode release date: 2022-09-30
lab: Richard Myers, HAIB
library encode accession: ENCLB066XXE
fragmentation methods: sonication (generic)

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ATF2

value: adult

value: 30 year

value: ENCBS927OAO at ENCODE; https://www.encodeproject.org/ENCBS927OAO/


title: TF ChIP-seq from HepG2 (ENCLB128AOA)

description:
https://www.encodeproject.org/experiments/ENCSR478SKI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR478SKI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR578XKJ
encode release date: 2023-01-10
lab: Richard Myers, HAIB
library encode accession: ENCLB128AOA
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: ENCBS483CBV at ENCODE; https://www.encodeproject.org/ENCBS483CBV/


title: TF ChIP-seq from HEK293 (ENCLB053PJF)

description:
https://www.encodeproject.org/experiments/ENCSR186JMM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HEK293
experiment encode accession: ENCSR186JMM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR245JDY
encode release date: 2022-10-03
lab: Richard Myers, HAIB
library encode accession: ENCLB053PJF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HEK293 cell line genetically modified (insertion) using CRISPR targeting H. sapiens MEIS1

value: female

value: unknown

value: embryonic

value: ENCBS652TAF at ENCODE; https://www.encodeproject.org/ENCBS652TAF/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: TF ChIP-seq from K562 (ENCLB262TJV)

description:
https://www.encodeproject.org/experiments/ENCSR926TAH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR926TAH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615INN
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB262TJV
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens PREB

value: PREB

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Richard Myers

value: ENCBS097HWK at ENCODE; https://www.encodeproject.org/ENCBS097HWK/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB422SJV)

description:
https://www.encodeproject.org/experiments/ENCSR475ZGL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR475ZGL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR385DOV
encode release date: 2022-10-03
lab: Richard Myers, HAIB
library encode accession: ENCLB422SJV
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens MLX

value: MLX

value: adult

value: Richard Myers, HAIB

value: ENCBS221SVI at ENCODE; https://www.encodeproject.org/ENCBS221SVI/


title: TF ChIP-seq from HEK293 (ENCLB079KLL)

description:
https://www.encodeproject.org/experiments/ENCSR186JMM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HEK293
experiment encode accession: ENCSR186JMM
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR245JDY
encode release date: 2022-10-03
lab: Richard Myers, HAIB
library encode accession: ENCLB079KLL
fragmentation methods: sonication (generic)

value: ENCBS347CJX at ENCODE; https://www.encodeproject.org/ENCBS347CJX/


title: TF ChIP-seq from K562 (ENCLB933DLY)

description:
https://www.encodeproject.org/experiments/ENCSR475ZGL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR475ZGL
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR385DOV
encode release date: 2022-10-03
lab: Richard Myers, HAIB
library encode accession: ENCLB933DLY
fragmentation methods: sonication (generic)

value: female

value: ENCBS910CZB at ENCODE; https://www.encodeproject.org/ENCBS910CZB/


title: TF ChIP-seq from K562 (ENCLB659YLJ)

description:
https://www.encodeproject.org/experiments/ENCSR926TAH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR926TAH
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615INN
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB659YLJ
fragmentation methods: sonication (generic)

value: ENCBS624EIC at ENCODE; https://www.encodeproject.org/ENCBS624EIC/


title: TF ChIP-seq from HepG2 (ENCLB176MZN)

description:
https://www.encodeproject.org/experiments/ENCSR178SXA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR178SXA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2022-08-31
lab: Richard Myers, HAIB
library encode accession: ENCLB176MZN
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens NCOA2

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: ATCC

value: ENCBS449PAU at ENCODE; https://www.encodeproject.org/ENCBS449PAU/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from WTC11 (ENCLB597JLM)

description:
https://www.encodeproject.org/experiments/ENCSR199PXS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR199PXS
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR428BNQ
encode release date: 2023-01-10
lab: Richard Myers, HAIB
library encode accession: ENCLB597JLM
fragmentation methods: sonication (generic)

value: cell line

value: 30 year

value: Richard Myers

value: ENCBS778PXQ at ENCODE; https://www.encodeproject.org/ENCBS778PXQ/

value: derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: TF ChIP-seq from WTC11 (ENCLB616JXB)

description:
https://www.encodeproject.org/experiments/ENCSR473ASI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR473ASI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR549JGF
encode release date: 2022-10-03
lab: Richard Myers, HAIB
library encode accession: ENCLB616JXB
fragmentation methods: sonication (generic)

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ELF4

value: adult

value: Richard Myers, HAIB

value: ENCBS380BIX at ENCODE; https://www.encodeproject.org/ENCBS380BIX/


title: TF ChIP-seq from K562 (ENCLB250ZQI)

description:
https://www.encodeproject.org/experiments/ENCSR924JOW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR924JOW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615INN
encode release date: 2022-08-23
lab: Richard Myers, HAIB
library encode accession: ENCLB250ZQI
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens KAT7

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS870GVO at ENCODE; https://www.encodeproject.org/ENCBS870GVO/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB878LXN)

description:
https://www.encodeproject.org/experiments/ENCSR924KZA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR924KZA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB878LXN
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF235

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: ENCBS754XHL at ENCODE; https://www.encodeproject.org/ENCBS754XHL/


title: TF ChIP-seq from HepG2 (ENCLB485TRM)

description:
https://www.encodeproject.org/experiments/ENCSR199MFT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR199MFT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR315QCW
encode release date: 2022-08-23
lab: Richard Myers, HAIB
library encode accession: ENCLB485TRM
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS064WZT at ENCODE; https://www.encodeproject.org/ENCBS064WZT/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from K562 (ENCLB986NEC)

description:
https://www.encodeproject.org/experiments/ENCSR924JOW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR924JOW
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615INN
encode release date: 2022-08-23
lab: Richard Myers, HAIB
library encode accession: ENCLB986NEC
fragmentation methods: sonication (generic)

value: Richard Myers

value: ENCBS161SSH at ENCODE; https://www.encodeproject.org/ENCBS161SSH/


title: TF ChIP-seq from WTC11 (ENCLB783DBC)

description:
https://www.encodeproject.org/experiments/ENCSR473ASI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR473ASI
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR549JGF
encode release date: 2022-10-03
lab: Richard Myers, HAIB
library encode accession: ENCLB783DBC
fragmentation methods: sonication (generic)

value: adult

value: 30 year

value: Richard Myers, HAIB

value: ENCBS610MJT at ENCODE; https://www.encodeproject.org/ENCBS610MJT/

value: derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: TF ChIP-seq from HepG2 (ENCLB335QXC)

description:
https://www.encodeproject.org/experiments/ENCSR478ZYO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR478ZYO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR800SRA
encode release date: 2022-10-03
lab: Richard Myers, HAIB
library encode accession: ENCLB335QXC
fragmentation methods: sonication (generic)

value: ENCBS348AMO at ENCODE; https://www.encodeproject.org/ENCBS348AMO/


title: TF ChIP-seq from WTC11 (ENCLB198HYJ)

description:
https://www.encodeproject.org/experiments/ENCSR928BPP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR928BPP
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR428BNQ
encode release date: 2022-09-30
lab: Richard Myers, HAIB
library encode accession: ENCLB198HYJ
fragmentation methods: sonication (generic)

value: ENCBS816PVL at ENCODE; https://www.encodeproject.org/ENCBS816PVL/


title: TF ChIP-seq from HepG2 (ENCLB692COB)

description:
https://www.encodeproject.org/experiments/ENCSR175MIA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR175MIA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR720MOD
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB692COB
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB2

value: male

value: ENCBS686FTW at ENCODE; https://www.encodeproject.org/ENCBS686FTW/


title: TF ChIP-seq from K562 (ENCLB562ZGU)

description:
https://www.encodeproject.org/experiments/ENCSR471WXT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR471WXT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615INN
encode release date: 2022-08-31
lab: Richard Myers, HAIB
library encode accession: ENCLB562ZGU
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens CREB1

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS999LBL at ENCODE; https://www.encodeproject.org/ENCBS999LBL/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from K562 (ENCLB514UGG)

description:
https://www.encodeproject.org/experiments/ENCSR471WXT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR471WXT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615INN
encode release date: 2022-08-31
lab: Richard Myers, HAIB
library encode accession: ENCLB514UGG
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS070FAU at ENCODE; https://www.encodeproject.org/ENCBS070FAU/


title: TF ChIP-seq from HepG2 (ENCLB988AIB)

description:
https://www.encodeproject.org/experiments/ENCSR175MIA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR175MIA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR720MOD
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB988AIB
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers

value: ENCBS496VDM at ENCODE; https://www.encodeproject.org/ENCBS496VDM/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB235EEC)

description:
https://www.encodeproject.org/experiments/ENCSR917SSX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR917SSX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR, ENCSR020QUJ
encode release date: 2022-07-15
lab: Richard Myers, HAIB
library encode accession: ENCLB235EEC
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF160

value: Richard Myers, HAIB

value: ENCBS645GKE at ENCODE; https://www.encodeproject.org/ENCBS645GKE/


title: TF ChIP-seq from HepG2 (ENCLB487UUS)

description:
https://www.encodeproject.org/experiments/ENCSR917SSX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR917SSX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR, ENCSR020QUJ
encode release date: 2022-07-15
lab: Richard Myers, HAIB
library encode accession: ENCLB487UUS
fragmentation methods: sonication (generic)

value: male

value: ENCBS357BEN at ENCODE; https://www.encodeproject.org/ENCBS357BEN/


title: TF ChIP-seq from K562 (ENCLB065SFX)

description:
https://www.encodeproject.org/experiments/ENCSR166BAY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR166BAY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615INN
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB065SFX
fragmentation methods: sonication (generic)

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB1

value: female

value: adult

value: ENCBS754OAM at ENCODE; https://www.encodeproject.org/ENCBS754OAM/


title: TF ChIP-seq from WTC11 (ENCLB080WWP)

description:
https://www.encodeproject.org/experiments/ENCSR454GVT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR454GVT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR491BNK
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB080WWP
fragmentation methods: sonication (generic)

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR targeting H. sapiens NR2C2

value: 30 year

value: ENCBS172GGA at ENCODE; https://www.encodeproject.org/ENCBS172GGA/

value: derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: TF ChIP-seq from WTC11 (ENCLB180DRI)

description:
https://www.encodeproject.org/experiments/ENCSR454GVT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR454GVT
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR491BNK
encode release date: 2022-08-15
lab: Richard Myers, HAIB
library encode accession: ENCLB180DRI
fragmentation methods: sonication (generic)

value: cell line

value: ENCBS263JSQ at ENCODE; https://www.encodeproject.org/ENCBS263JSQ/


title: TF ChIP-seq from HepG2 (ENCLB594OIW)

description:
https://www.encodeproject.org/experiments/ENCSR913KJZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR913KJZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR396WYG
encode release date: 2023-01-10
lab: Richard Myers, HAIB
library encode accession: ENCLB594OIW
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens KLF16

value: hepatocellular carcinoma

value: child

value: ENCBS927LTZ at ENCODE; https://www.encodeproject.org/ENCBS927LTZ/


title: TF ChIP-seq from K562 (ENCLB655YXY)

description:
https://www.encodeproject.org/experiments/ENCSR166BAY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562
experiment encode accession: ENCSR166BAY
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR615INN
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB655YXY
fragmentation methods: sonication (generic)

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Richard Myers

value: ENCBS662DJB at ENCODE; https://www.encodeproject.org/ENCBS662DJB/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: TF ChIP-seq from HepG2 (ENCLB158HUQ)

description:
https://www.encodeproject.org/experiments/ENCSR165EGX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR165EGX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB158HUQ
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens JARID2

value: male

value: 15 year

value: Richard Myers, HAIB

value: ENCBS764NQR at ENCODE; https://www.encodeproject.org/ENCBS764NQR/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: TF ChIP-seq from HepG2 (ENCLB683MHR)

description:
https://www.encodeproject.org/experiments/ENCSR913KJZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR913KJZ
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR396WYG
encode release date: 2023-01-10
lab: Richard Myers, HAIB
library encode accession: ENCLB683MHR
fragmentation methods: sonication (generic)

value: ENCBS440LYY at ENCODE; https://www.encodeproject.org/ENCBS440LYY/


title: TF ChIP-seq from HepG2 (ENCLB594TBQ)

description:
https://www.encodeproject.org/experiments/ENCSR924KZA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR924KZA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR693GOR
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB594TBQ
fragmentation methods: sonication (generic)

value: ENCBS921KYN at ENCODE; https://www.encodeproject.org/ENCBS921KYN/


title: TF ChIP-seq from HepG2 (ENCLB207HQD)

description:
https://www.encodeproject.org/experiments/ENCSR912NEF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR912NEF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2022-09-30
lab: Richard Myers, HAIB
library encode accession: ENCLB207HQD
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens MGA

value: MGA

value: cell line

value: ENCBS570SHA at ENCODE; https://www.encodeproject.org/ENCBS570SHA/


title: TF ChIP-seq from HepG2 (ENCLB115YWJ)

description:
https://www.encodeproject.org/experiments/ENCSR912NEF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR912NEF
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR313HFF
encode release date: 2022-09-30
lab: Richard Myers, HAIB
library encode accession: ENCLB115YWJ
fragmentation methods: sonication (generic)

value: hepatocellular carcinoma

value: child

value: ENCBS719BBJ at ENCODE; https://www.encodeproject.org/ENCBS719BBJ/


title: TF ChIP-seq from HepG2 (ENCLB205YUG)

description:
https://www.encodeproject.org/experiments/ENCSR165EGX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR165EGX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB205YUG
fragmentation methods: sonication (generic)

value: ENCBS649ANB at ENCODE; https://www.encodeproject.org/ENCBS649ANB/


title: TF ChIP-seq from HepG2 (ENCLB944MSF)

description:
https://www.encodeproject.org/experiments/ENCSR443YTB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR443YTB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR542TKO
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB944MSF
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens PROX1

value: Richard Myers

value: ENCBS222QEV at ENCODE; https://www.encodeproject.org/ENCBS222QEV/


title: TF ChIP-seq from HepG2 (ENCLB269MWM)

description:
https://www.encodeproject.org/experiments/ENCSR727IJD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR727IJD
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR720MOD
encode release date: 2022-08-31
lab: Richard Myers, HAIB
library encode accession: ENCLB269MWM
fragmentation methods: sonication (generic)

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF562

value: ENCBS538BTO at ENCODE; https://www.encodeproject.org/ENCBS538BTO/


title: TF ChIP-seq from HepG2 (ENCLB693COQ)

description:
https://www.encodeproject.org/experiments/ENCSR443YTB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2
experiment encode accession: ENCSR443YTB
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR542TKO
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB693COQ
fragmentation methods: sonication (generic)

value: male

value: ENCBS609PBI at ENCODE; https://www.encodeproject.org/ENCBS609PBI/


title: TF ChIP-seq from WTC11 (ENCLB557DTL)

description:
https://www.encodeproject.org/experiments/ENCSR722OTA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR722OTA
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR783VJL
encode release date: 2023-01-06
lab: Richard Myers, HAIB
library encode accession: ENCLB557DTL
fragmentation methods: sonication (generic)

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR targeting H. sapiens NR3C1

value: adult

value: 30 year

value: Richard Myers, HAIB

value: ENCBS441ZFR at ENCODE; https://www.encodeproject.org/ENCBS441ZFR/

value: derived from ENCODE donor ENCDO882UJI; https://www.encodeproject.org/ENCDO882UJI/


title: TF ChIP-seq from WTC11 (ENCLB204SHJ)

description:
https://www.encodeproject.org/experiments/ENCSR910UQX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on WTC11
experiment encode accession: ENCSR910UQX
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR428BNQ
encode release date: 2022-10-03
lab: Richard Myers, HAIB
library encode accession: ENCLB204SHJ
fragmentation methods: sonication (generic)

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR targeting H. sapiens TGIF2

value: ENCBS465DBG at ENCODE; https://www.encodeproject.org/ENCBS465DBG/