title: Exp0_F3058C56_Plate1_K1D5_N702_S517, Child

description:
ELT5411_A107
genes.fpkm_table
genes.attr_table
samples.table

value: Tem


title: Normal 2 DAPT Repeat 2

status: Public on Aug 16 2023

type: SRA

city: Boston

first: Jay

last: Thiagarajah

state: MA

address: 300 Longwood Avenue, EN620

department: Gastroenterology

country: USA

institute: Boston Children's Hospital

library_source: transcriptomic

data_processing:
preprocessed using FASTP
Filtered reads mapped to  GRCh41 genome assembly using HISAT2 (All alignment greater than 90%)
Transcripts were quantified using Salmon
Assembly: GRCh41
Supplementary files format and content: tab-delimited file including TPM values for each sample

molecule: total RNA

organism: Homo sapiens

source_name: Duodenal

growth_protocol: Cultured as 50 μl domes in 24-well plates with growth factor (Wnt, R-spondin, Noggin) supplemented media

extract_protocol: Total RNA was extracted using the RNeasy Mini Kit (Qiagen).

tag: tissue

value: Duodenal

tag: cell type

value: Enteroid

tag: genotype

value: Normal

tag: disease state

value: control

tag: individual

value: Normal 2

tag: treatment

value: DAPT


title: Normal 2 DAPT Repeat 3


title: Exp0_F3058C56_Plate1_K1C5_N702_S516, Child

city: Sydney

first: Fabio

last: Luciani

state: NSW

address: Kensington Campus

country: Australia

institute: UNSW Sydney

description:
ELT5411_A106
genes.fpkm_table
genes.attr_table
samples.table

library_source: transcriptomic single cell

data_processing:
VDJPuzzle was run to extract TCR and quantify gene expression (FPKM)
Assembly: hg38
Supplementary files format and content: Matrix of FPKM values per sample, per gene
Supplementary files format and content: List of gene names in matrix
Supplementary files format and content: List of sample names in matrix

source_name: PBMCs

extract_protocol:
Single influenza A2/M158-specific CD8+ T cells were sorted using flow cytometry, with RNA isolation and sequencing library construction performed according to the Smart-seq2 protocol.
Single cell RNA libraries were prepared for sequencing using standard Illumina protocols

value: PBMCs

value: CD8+ T cell

tag: epitope

tag: age

value: Child

tag: phenotype

value: Tcm


title: Exp0_F3058C56_Plate1_K1A5_N702_S513, Child

description:
ELT5411_A104
genes.fpkm_table
genes.attr_table
samples.table

tag: cell line

value: Bulk C1R

value: Bulk C1R cell line


title: Normal 1 DAPT Repeat 1

value: Normal 1


title: Normal 2 DAPT Repeat 1


title: Normal 1 DAPT Repeat 2


title: Normal 1 DAPT Repeat 3


title: Exp0_F3058C56_Plate1_K1H4_N701_S522, Child

description:
ELT5411_A103
genes.fpkm_table
genes.attr_table
samples.table


title: Exp0_F3058C56_Plate1_K1G4_N701_S521, Child

description:
ELT5411_A102
genes.fpkm_table
genes.attr_table
samples.table


title: Patient 2 Untreated Repeat 2

value: Patient with Myo5B mutation

value: MVID

value: Patient 2

value: Untreated


title: Exp0_F3058C56_Plate1_K1F4_N701_S520, Child

description:
ELT5411_A101
genes.fpkm_table
genes.attr_table
samples.table


title: Normal 2 Untreated Repeat 2

value: Duodenal


title: Exp0_F3058C56_Plate1_K1E4_N701_S518, Child

description:
ELT5411_A100
genes.fpkm_table
genes.attr_table
samples.table

value: Tnaive


title: Exp0_CB149_Plate1_C1D2_N702_S503, Newborn

description:
ELT5411_A10
genes.fpkm_table
genes.attr_table
samples.table

value: Newborn


title: Normal 1 Untreated Repeat 3

value: Enteroid

value: Normal

value: control


title: Normal 1 Untreated Repeat 2


title: Normal 2 Untreated Repeat 1

value: Normal 2


title: Exp0_CB149_Plate1_C1C2_N702_S502, Newborn

description:
ELT5411_A09
genes.fpkm_table
genes.attr_table
samples.table

value: PBMCs

value: CD8+ T cell


title: Exp0_CB149_Plate1_C1B2_N701_S511, Newborn

description:
ELT5411_A08
genes.fpkm_table
genes.attr_table
samples.table


title: Normal 1 Untreated Repeat 1


title: Exp0_CB149_Plate1_C1E1_N701_S506, Newborn

description:
ELT5411_A04
genes.fpkm_table
genes.attr_table
samples.table


title: Exp0_CB149_Plate1_C1F1_N701_S507, Newborn

description:
ELT5411_A05
genes.fpkm_table
genes.attr_table
samples.table


title: Exp0_CB149_Plate1_C1D1_N701_S505, Newborn

description:
ELT5411_A03
genes.fpkm_table
genes.attr_table
samples.table


title: Exp0_CB149_Plate1_C1G1_N701_S508, Newborn

description:
ELT5411_A06
genes.fpkm_table
genes.attr_table
samples.table


title: Exp0_CB149_Plate1_C1H1_N701_S510, Newborn

description:
ELT5411_A07
genes.fpkm_table
genes.attr_table
samples.table

value: Tcm


title: Rbfox2-rABE, 24h, 1000 ng/ml dox, rep3

city: San Francisco

first: Yizhu

last: Lin

state: CA

address: 513 Parnassus

department: Cell and Tissue Biology

institute: University of California, San Francisco

description: RBFox2-rABE-24h_cmh_A-G-doxH_DP50_OR1_padj005.bed

data_processing:
Sequencing reads were aligned with STAR to GRCh38 human genome reference
Aligned bam files were processed with samtools, picard MarkDuplicates, and GATK SplitNCigarReads
Assembly: GRCh38
Supplementary files format and content: Aligned bam files

source_name: kidney

growth_protocol: HEK 293T cells were cultured in DMEM with 4.5 g / L glucose, L-glutamine & sodium pyruvate (Corning #10-0130CV) and 10% FBS (Avantor #97068-085) at 37 ˚C, 5% CO2.

extract_protocol:
Cellular RNA extraction was performed with Direct-zol RNA miniprep Kit (Zymo Research #R2053) following manufacturer’s protocol
For Illumina high-through sequencing library preparation, we used NEBNext® rRNA Depletion Kit (Human/Mouse/Rat) (NEB #E7405), NEBNext® Ultra™ II Directional RNA Library Prep Kit for Illumina® (NEB #E7765) and NEBNext Multiplex Oligos for Illumina (NEB #E6440S and NEB #E6442S) following manufacturer’s protocol.

value: kidney

value: Human embryonic kidney

value: 1000 ng/ml dox


title: Rbfox2-rABE, 24h, 50 ng/ml dox, rep3

description: RBFox2-rABE-24h_cmh_A-G-doxL_DP50_OR1_padj005.bed

value: 50 ng/ml dox


title: Exp0_F3058C56_Plate1_K1B5_N702_S515, Child

description:
ELT5411_A105
genes.fpkm_table
genes.attr_table
samples.table

value: Child


title: Rbfox2-rABE, 24h, 50 ng/ml dox, rep1


title: Rbfox2-rABE, 24h, 1000 ng/ml dox, rep2


title: Normal 2 Untreated Repeat 3


title: Rbfox2-rABE, 24h, 1000 ng/ml dox, rep1


title: Exp0_CB149_Plate1_C1C1_N701_S503, Newborn

description:
ELT5411_A02
genes.fpkm_table
genes.attr_table
samples.table


title: Rbfox2-rABE, 12h, DMSO control, rep3

description:
RBFox2-rABE-12h_cmh_A-G-doxH_DP50_OR1_padj005.bed
RBFox2-rABE-12h_cmh_A-G-doxL_DP50_OR1_padj005.bed

value: DMSO control


title: Exp0_CB149_Plate1_C1B1_N701_S502, Newborn

description:
ELT5411_A01
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_C09_N722_S521, Older adult

description:
CAI7247_239
genes.fpkm_table
genes.attr_table
samples.table

value: Older adult

value: Tem


title: Rbfox2-rABE, 12h, DMSO control, rep2


title: Exp2_DMC48_Plate1_E2P1_F10_N723_S522, Older adult

description:
CAI7247_248
genes.fpkm_table
genes.attr_table
samples.table

value: Tnaive


title: Rbfox2-rABE, 12h, DMSO control, rep1


title: Rbfox2-rABE, 12h, 50 ng/ml dox, rep3

description: RBFox2-rABE-12h_cmh_A-G-doxL_DP50_OR1_padj005.bed


title: Exp2_DMC48_Plate1_E2P1_B09_N722_S520, Older adult

description:
CAI7247_238
genes.fpkm_table
genes.attr_table
samples.table


title: Rbfox2-rABE, 24h, 50 ng/ml dox, rep2


title: Rbfox2-rABE, 12h, 50 ng/ml dox, rep2


title: Rbfox2-rABE, 12h, 50 ng/ml dox, rep1


title: Exp2_DMC48_Plate1_E2P1_F08_N722_S517, Older adult

description:
CAI7247_236
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_A09_N722_S518, Older adult

description:
CAI7247_237
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_E08_N722_S516, Older adult

description:
CAI7247_235
genes.fpkm_table
genes.attr_table
samples.table


title: Rbfox2-rABE, 12h, 1000 ng/ml dox, rep3

description: RBFox2-rABE-12h_cmh_A-G-doxH_DP50_OR1_padj005.bed


title: Exp2_DMC48_Plate1_E2P1_D08_N722_S515, Older adult

description:
CAI7247_234
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_B08_N721_S522, Older adult

description:
CAI7247_232
genes.fpkm_table
genes.attr_table
samples.table


title: Rbfox2-hyperTRIBE, 1000 ng/ml dox, rep3

description: RBFox2-hyperTRIBE_cmh_A-G-doxH_DP50_OR1_padj005.bed


title: Exp2_DMC48_Plate1_E2P1_C08_N722_S513, Older adult

description:
CAI7247_233
genes.fpkm_table
genes.attr_table
samples.table


title: Rbfox2-rABE, 12h, 1000 ng/ml dox, rep2


title: Exp2_DMC48_Plate1_E2P1_A08_N721_S521, Older adult

description:
CAI7247_231
genes.fpkm_table
genes.attr_table
samples.table

value: Bulk Naive CD8+ T cells


title: Rbfox2-hyperTRIBE, 1000 ng/ml dox, rep1


title: Rbfox2-hyperTRIBE, 1000 ng/ml dox, rep2


title: Rbfox2-hyperTRIBE, 50 ng/ml dox, rep3

description: RBFox2-hyperTRIBE_cmh_A-G-doxL_DP50_OR1_padj005.bed


title: Rbfox2-hyperTRIBE, 50 ng/ml dox, rep1


title: Exp2_DMC48_Plate1_E2P1_G07_N721_S520, Older adult

description:
CAI7247_230
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_C07_N721_S516, Older adult

description:
CAI7247_227
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_E07_N721_S518, Older adult

description:
CAI7247_229
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_B07_N721_S515, Older adult

description:
CAI7247_226
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_D07_N721_S517, Older adult

description:
CAI7247_228
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_A07_N721_S513, Older adult

description:
CAI7247_225
genes.fpkm_table
genes.attr_table
samples.table


title: Rbfox2-hyperTRIBE, 50 ng/ml dox, rep2


title: Rbfox2-hyperTRIBE, DMSO control, rep2

description:
RBFox2-hyperTRIBE_cmh_A-G-doxH_DP50_OR1_padj005.bed
RBFox2-hyperTRIBE_cmh_A-G-doxL_DP50_OR1_padj005.bed


title: Exp2_DMC48_Plate1_E2P1_G06_N720_S522, Older adult

description:
CAI7247_224
genes.fpkm_table
genes.attr_table
samples.table


title: Rbfox2-rABE, 12h, 1000 ng/ml dox, rep1


title: rABE, 24h, 50 ng/ml dox, rep3

description: RBFox2-rABE-24h_cmh_A-G-doxL_DP50_OR1_padj005.bed

value: rABE


title: Exp2_DMC48_Plate1_E2P1_F06_N720_S521, Older adult

description:
CAI7247_223
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_E06_N720_S520, Older adult

description:
CAI7247_222
genes.fpkm_table
genes.attr_table
samples.table


title: rABE, 24h, 50 ng/ml dox, rep2


title: Exp2_DMC48_Plate1_E2P1_D06_N720_S518, Older adult

description:
CAI7247_221
genes.fpkm_table
genes.attr_table
samples.table


title: rABE, 24h, 1000 ng/ml dox, rep3

description: RBFox2-rABE-24h_cmh_A-G-doxH_DP50_OR1_padj005.bed


title: rABE, 24h, 50 ng/ml dox, rep1


title: Exp2_DMC48_Plate1_E2P1_C06_N720_S517, Older adult

description:
CAI7247_220
genes.fpkm_table
genes.attr_table
samples.table

value: Tscm


title: rABE, 24h, 1000 ng/ml dox, rep2


title: Exp2_DMC48_Plate1_E2P1_A06_N720_S515, Older adult

description:
CAI7247_218
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_G05_N720_S513, Older adult

description:
CAI7247_217
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_B06_N720_S516, Older adult

description:
CAI7247_219
genes.fpkm_table
genes.attr_table
samples.table


title: rABE, 24h, 1000 ng/ml dox, rep1


title: Rbfox2-hyperTRIBE, DMSO control, rep3


title: rABE, 12h, DMSO control, rep2

description:
RBFox2-rABE-12h_cmh_A-G-doxH_DP50_OR1_padj005.bed
RBFox2-rABE-12h_cmh_A-G-doxL_DP50_OR1_padj005.bed


title: Exp2_DMC48_Plate1_E2P1_F05_N719_S522, Older adult

description:
CAI7247_216
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_E05_N719_S521, Older adult

description:
CAI7247_215
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_A05_N719_S516, Older adult

description:
CAI7247_211
genes.fpkm_table
genes.attr_table
samples.table

value: Bulk C1R

value: Bulk C1R cell line


title: rABE, 12h, DMSO control, rep1


title: Exp2_DMC48_Plate1_E2P1_D05_N719_S520, Older adult

description:
CAI7247_214
genes.fpkm_table
genes.attr_table
samples.table

value: PBMCs


title: rABE, 12h, 50 ng/ml dox, rep3

description: RBFox2-rABE-12h_cmh_A-G-doxL_DP50_OR1_padj005.bed


title: rABE, 12h, 50 ng/ml dox, rep2


title: rABE, 12h, 50 ng/ml dox, rep1


title: Exp2_DMC48_Plate1_E2P1_B05_N719_S517, Older adult

description:
CAI7247_212
genes.fpkm_table
genes.attr_table
samples.table

value: CD8+ T cell


title: Exp2_DMC48_Plate1_E2P1_C05_N719_S518, Older adult

description:
CAI7247_213
genes.fpkm_table
genes.attr_table
samples.table


title: rABE, 12h, 1000 ng/ml dox, rep2

description: RBFox2-rABE-12h_cmh_A-G-doxH_DP50_OR1_padj005.bed


title: rABE, 12h, 1000 ng/ml dox, rep3


title: Exp2_DMC48_Plate1_E2P1_G04_N719_S515, Older adult

description:
CAI7247_210
genes.fpkm_table
genes.attr_table
samples.table

value: Tcm


title: Exp2_DMC48_Plate1_E2P1_F04_N719_S513, Older adult

description:
CAI7247_209
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_D04_N718_S521, Older adult

description:
CAI7247_207
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_E04_N718_S522, Older adult

description:
CAI7247_208
genes.fpkm_table
genes.attr_table
samples.table


title: hyperTRIBE, 1000 ng/ml dox, rep2

description:
bg_hyperTRIBE_cmh_A-G-doxH_DP50_OR1_padj005.bed
RBFox2-hyperTRIBE_cmh_A-G-doxH_DP50_OR1_padj005.bed

value: kidney

value: hyperTRIBE


title: Exp2_DMC48_Plate1_E2P1_C04_N718_S520, Older adult

description:
CAI7247_206
genes.fpkm_table
genes.attr_table
samples.table


title: hyperTRIBE, 1000 ng/ml dox, rep3

value: Human embryonic kidney

value: 1000 ng/ml dox


title: hyperTRIBE, 1000 ng/ml dox, rep1


title: rABE, 12h, DMSO control, rep3


title: hyperTRIBE, 50 ng/ml dox, rep3

description:
bg_hyperTRIBE_cmh_A-G-doxL_DP50_OR1_padj005.bed
RBFox2-hyperTRIBE_cmh_A-G-doxL_DP50_OR1_padj005.bed

value: 50 ng/ml dox


title: hyperTRIBE, 50 ng/ml dox, rep2


title: Exp2_DMC48_Plate1_E2P1_G03_N718_S516, Older adult

description:
CAI7247_203
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_B04_N718_S518, Older adult

description:
CAI7247_205
genes.fpkm_table
genes.attr_table
samples.table


title: hyperTRIBE, 50 ng/ml dox, rep1


title: Exp2_DMC48_Plate1_E2P1_A04_N718_S517, Older adult

description:
CAI7247_204
genes.fpkm_table
genes.attr_table
samples.table


title: hyperTRIBE, DMSO control, rep3

description:
bg_hyperTRIBE_cmh_A-G-doxH_DP50_OR1_padj005.bed
bg_hyperTRIBE_cmh_A-G-doxL_DP50_OR1_padj005.bed

value: DMSO control


title: Exp2_DMC48_Plate1_E2P1_C03_N718_S513, Older adult

description:
CAI7247_201
genes.fpkm_table
genes.attr_table
samples.table

value: Older adult


title: Exp2_DMC48_Plate1_E2P1_D03_N718_S515, Older adult

description:
CAI7247_202
genes.fpkm_table
genes.attr_table
samples.table


title: hyperTRIBE, DMSO control, rep2


title: Exp2_DMC48_Plate1_E2P1_B03_N716_S522, Older adult

description:
CAI7247_200
genes.fpkm_table
genes.attr_table
samples.table


title: Rbfox2-hyperTRIBE, DMSO control, rep1

description:
RBFox2-hyperTRIBE_cmh_A-G-doxH_DP50_OR1_padj005.bed
RBFox2-hyperTRIBE_cmh_A-G-doxL_DP50_OR1_padj005.bed


title: hyperTRIBE, DMSO control, rep1


title: Exp2_DMC48_Plate1_E2P1_A03_N716_S521, Older adult

description:
CAI7247_199
genes.fpkm_table
genes.attr_table
samples.table


title: rABE, 12h, 1000 ng/ml dox, rep1

description: RBFox2-rABE-12h_cmh_A-G-doxH_DP50_OR1_padj005.bed


title: CUTTag_PD42_TAZ

city: Zhanjiang

first: Yiting

last: Guan

address: 236 Yuanzhu Road

department: Zhanjiang Institute of Clinical Medicine

country: China

institute: Guangdong Medical University

library_source: genomic

data_processing:
For CUT&Tag data processing, FASTQC was used to measure the date quality distribution.
The clean reads were then aligned to reference genome sequences using the bwa program.
Peaks were called using MACS2 peak caller with q-value < 0.05.
Genome-wide normalized signal coverage tracks were visualized in the IGV.
Assembly: hg38
Supplementary files format and content: bigWig files include peaks for each sample, respectively.

molecule: genomic DNA

source_name: Human umbilical cord

growth_protocol: hTERT RPE-1 cells (ATCC, CRL-4000) were cultured in F12/DMEM (1:1) supplemented with 10% fetal bovine serum (FBS, Gemini, 900-108) and 0.01mg/ml hygromycin B under 5% CO2 at 37°C.

extract_protocol:
The primary human umbilical cord mesenchymal stem cells (UC-MSCs) were obtained from fetuses with natural labor in Central People's Hospital of Zhanjiang. The experiment has been approved by Institutional Ethics Committee of Central People's Hospital of Zhanjiang (IIT-2022-057-01). Briefly, the fresh umbilical cord was cut off into clumps and were digested with 1 g/L collagenase II for 1 h. The digested clumps were then cultured in DMEM supplemented with 20% fetal bovine serum (FBS, Gibco, 12800), 100 U/mL penicillin, and 100 U/mL streptomycin at 37°C under 5% CO2. After 16 days, the clumps were removed carefully and cells were serially passaged after reaching 80−90% confluence. Cells are qualified for microbiology and virology tests. The population doublings were calculated with PD = log2 (Ne/N0), where N0 represents the number of seeds and Ne represents the number of counts. Cumulative PD numbers represent the sum of PDs from all previous passages, with cells derived from the primary culture considered PD = 0.
CUT&Tag analysis was performed using the Hyperactive® Universal CUT&Tag Assay Kit for Illumina (Vazyme, TD903) as described by the manufacturers with some modifications. Briefly, nuclei were extracted from the 10,000 fresh cells, and added the ConA beads incubating at room temperature for 10 min. The mixed complexes were the incubated with H3K27ac and TEAD4 specific primary antibodies with IgG antibody as a control, and the next day, followed by the secondary antibody. A diluted pA-Tn5 adapter complex was then added to the above system and incubated at room temperature for 1 h. After extensive washing, system were subsequently sheared by adding 5 × TTBL. Subsequent proteinase K and DNA extract beads were used for obtaining eluted DNA. Finally, the sequencing libraries were established after 12 cycles of PCR amplification.

value: Human umbilical cord

value: Human umbilical cord mesenchymal stem cells

value: WT


title: CUTTag_PD2_TAZ


title: CUTTag_PD42_YAP


title: CUTTag_PD2_YAP


title: Exp2_DMC48_Plate1_E2P1_C02_N716_S515, Older adult

description:
CAI7247_194
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_F02_N716_S518, Older adult

description:
CAI7247_197
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_B02_N716_S513, Older adult

description:
CAI7247_193
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_D02_N716_S516, Older adult

description:
CAI7247_195
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_G01_N715_S522, Older adult

description:
CAI7247_192
genes.fpkm_table
genes.attr_table
samples.table

value: Tem


title: Exp2_DMC48_Plate1_E2P1_E01_N715_S520, Older adult

description:
CAI7247_190
genes.fpkm_table
genes.attr_table
samples.table

value: Tnaive


title: Exp2_DMC48_Plate1_E2P1_D01_N715_S518, Older adult

description:
CAI7247_189
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_F01_N715_S521, Older adult

description:
CAI7247_191
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_G02_N716_S520, Older adult

description:
CAI7247_198
genes.fpkm_table
genes.attr_table
samples.table


title: S81

city: Beijing

first: Yanhua

last: Li

address: No.1 Beichen West Road, Chaoyang District

institute: Institute of Microbiology, Chinese Academy of Sciences

data_processing:
The Cell Ranger software pipeline provided by 10×Genomics was used to demultiplex cellular barcodes
map reads to the genome and transcriptome using the STAR aligner
down-sample reads as required to generate normalized aggregate data across samples
producing a matrix of gene counts versus cells
Single-cell data were integrated and clustered using the Seurat R package (version 4). A total of 124,541 cells were obtained from single-cell sequencing of the nine samples, and 108,306 cells remained after quality control. The cell quality control was conducted as follows: cells with a mitochondrial gene ratio exceeding 10% were removed, and only cells with gene numbers ranging from 300 to 4,000 and UMI numbers ranging from 600 to 10,000 were retained. DoubletFinder R package was used to remove potential doubles. The filtered data were then standardized and normalized, and principal component analysis was performed on the top 2,000 genes with the highest coefficients of variation. The Harmony R package was used to remove inter-batch effects between the samples and groups for cell clustering. Based on the turning point and significance of the different principal components, the first 30 PCs were selected for subsequent cell clustering, and different resolutions were set to determine the cell clusters. Dimensionality reduction and visualization of single cells were performed using the Uniform Manifold Approximation and Projection (UMAP). The specific execution process of Seurat can be found on the website tutorial (https://satijalab.org/seurat/v4.0/pbmc3k_tutorial.html). Detailed information of methods and data analysis are with the supplementary methods.
Assembly: GRCh38
Supplementary files format and content: Matrix table with raw gene counts for every gene and every cell, features table and barcode for every cell
Supplementary files format and content: filtered_contig_annotations of TCR and BCR for every T or B cell

molecule: polyA RNA

source_name: PBMC

extract_protocol:
Peripheral blood mononuclear cell (PBMC)s were stored at -80°C with serum-free cell freezing solution (Cat. No. C40100) immediately after isolation and transferred to liquid nitrogen after about 24 hours for storage. After defrosting, PBMCs were resuspended in 1 mL RPMI 1640 medium (Corning, Cat. No. 10-040-CVR) with 0.04% BSA, and the single-cell suspension concentration and cell viability were determined. If the proportion of dead cells was high, the cells were removed according to the MACS Dead Cell Removal Kit (130-090-101) instructions and measured again. A cell viability >85% allowed single-cell library sequencing.
The single-cell suspension was prepared in water for cDNA library amplification using the 10× Genomics Chromium Next GEM Single Cell 5ʹ Reagent Kits (version 2.0; Cat. No. 1000165). The Chromium™ Single Cell 5ʹ Library Construction Kit (Cat. No. 1000020) was used to construct the DNA library. The constructed library was then sequenced using PE150 sequencing on an Illumina Nova 6000 platform. T cell V(D)J and B cell V(D)J enrichment analyses were performed using the 10× Genomics Chromium™ Single Cell V(D)J Enrichment Kit, Human T Cell (Cat. No. 1000005) and Human B Cell (Cat. No. 1000016) according to the manufacturer’s instructions. The libraries were amplified using a Chromium TCR amplification kit (Cat. No. 1000252) and BCR amplification kit (Cat. No. 1000253), and the experiment was performed according to the manufacturer’s instructions.

value: PBMC

value: Healthy control


title: S78


title: S76


title: Exp2_DMC48_Plate1_E2P1_C01_N715_S517, Older adult

description:
CAI7247_188
genes.fpkm_table
genes.attr_table
samples.table

value: PBMCs


title: S74


title: Exp2_DMC48_Plate1_E2P1_B01_N715_S516, Older adult

description:
CAI7247_187
genes.fpkm_table
genes.attr_table
samples.table

value: CD8+ T cell


title: S41

value: BA.2 breakthrough infected convalescent


title: Exp2_KK86_Plate3_A3P3_F10_N715_S513, Adult

description:
CAI7247_185
genes.fpkm_table
genes.attr_table
samples.table

value: Adult


title: S63


title: Exp2_KK86_Plate3_A3P3_E10_N714_S522, Adult

description:
CAI7247_184
genes.fpkm_table
genes.attr_table
samples.table

value: Temra


title: Exp2_KK86_Plate3_A3P3_G10_N715_S515, Adult

description:
CAI7247_186
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_DMC48_Plate1_E2P1_E02_N716_S517, Older adult

description:
CAI7247_196
genes.fpkm_table
genes.attr_table
samples.table


title: S6


title: Exp2_KK86_Plate3_A3P3_D10_N714_S521, Adult

description:
CAI7247_183
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate3_A3P3_C10_N714_S520, Adult

description:
CAI7247_182
genes.fpkm_table
genes.attr_table
samples.table


title: 464453 NA

city: Baltimore

first: Rasika

middle: M

last: Mathias

state: MD

address: 5501 Bayview Cir

department: Allergy and Clinical Immunology

institute: Johns Hopkins University

data_processing:
Trimming: FastQC0.11.9, BBDuk Version 38.90
Alignment: HISAT2 Version 2.2.21
Read Count Extraction: CoCo Version 2.0.2
Normalization: LIMMA Version 3.50.3, sva Version 3.42.0, edgeR Version 3.36.0
Filtering Genes: DESeq2_1.34.0
Assembly: GrCh38
Supplementary files format and content: full_n536__21831_voom_norm_counts_with_RandomID.csv
Supplementary files format and content: full_n536__raw_counts_with_RandomID.csv

source_name: Nasal Epithelium

extract_protocol: Total RNA with Ribo-Zero kit was used to prepare libraries from nasal epithelial cells depleting the ribosomal RNA

value: Nasal Epithelium

tag: Sex

value: Male

tag: case control_definition

tag: rnaseq inclusion

tag: site

value: Washington DC

tag: asthma

value: Asthmatic

tag: active asthma

value: Inactive Asthma

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content

tag: full pc1

tag: full pc2

tag: washington dc_pc1

tag: washington dc_pc2


title: S53

tag: tissue

tag: cell type

tag: disease state


title: Exp2_KK86_Plate3_A3P3_B10_N714_S518, Adult

description:
CAI7247_181
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope

tag: age

tag: phenotype

value: Tscm


title: Exp2_KK86_Plate3_A3P3_A10_N714_S517, Adult

description:
CAI7247_180
genes.fpkm_table
genes.attr_table
samples.table


title: 835229 Control

tag: Sex

value: Female

tag: case control_definition

value: Control

tag: rnaseq inclusion

value: Nigeria

value: Not Asthmatic

tag: nigeria pc1

tag: nigeria pc2


title: 796249 Control

tag: site

tag: asthma

tag: active asthma

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch


title: Exp2_KK86_Plate3_A3P3_G09_N714_S515, Adult

description:
CAI7247_178
genes.fpkm_table
genes.attr_table
samples.table

value: Tnaive


title: Exp2_KK86_Plate3_A3P3_H09_N714_S516, Adult

description:
CAI7247_179
genes.fpkm_table
genes.attr_table
samples.table

value: Tcm


title: S11

value: PBMC


title: 448462 Control

tag: rnaseq cg_content

tag: full pc1

tag: full pc2


title: 373865 Control

tag: tissue


title: 585673 Control


title: Exp2_KK86_Plate3_A3P3_D09_N712_S521, Adult

description:
CAI7247_175
genes.fpkm_table
genes.attr_table
samples.table

value: PBMCs

tag: cell type

value: CD8+ T cell

tag: epitope


title: Exp2_KK86_Plate3_A3P3_E09_N712_S522, Adult

description:
CAI7247_176
genes.fpkm_table
genes.attr_table
samples.table

tag: age

value: Adult

tag: phenotype

value: Tem


title: 269750 Control

value: Nasal Epithelium

tag: Sex

tag: case control_definition


title: Exp2_KK86_Plate3_A3P3_B09_N712_S518, Adult

description:
CAI7247_173
genes.fpkm_table
genes.attr_table
samples.table


title: 560121 Control

value: Male

tag: rnaseq inclusion

tag: nigeria pc1


title: 984585 Control

tag: site

tag: nigeria pc2


title: 225800 Control

tag: asthma

tag: active asthma


title: 292354 Control

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch


title: Exp2_KK86_Plate3_A3P3_A09_N712_S517, Adult

description:
CAI7247_172
genes.fpkm_table
genes.attr_table
samples.table

value: Temra


title: Exp2_KK86_Plate3_A3P3_C09_N712_S520, Adult

description:
CAI7247_174
genes.fpkm_table
genes.attr_table
samples.table


title: 180818 Control

tag: rnaseq cg_content

tag: full pc1


title: 143896 Control

tag: tissue

tag: full pc2


title: 748490 Control


title: Exp2_KK86_Plate3_A3P3_F09_N714_S513, Adult

description:
CAI7247_177
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope


title: 528063 Control

tag: age


title: Exp2_KK86_Plate3_A3P3_G08_N712_S515, Adult

description:
CAI7247_170
genes.fpkm_table
genes.attr_table
samples.table

tag: phenotype


title: Exp2_KK86_Plate3_A3P3_C08_N711_S520, Adult

description:
CAI7247_166
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate3_A3P3_D08_N711_S521, Adult

description:
CAI7247_167
genes.fpkm_table
genes.attr_table
samples.table


title: 773934 Control

tag: Sex

tag: case control_definition


title: Exp2_KK86_Plate3_A3P3_E08_N711_S522, Adult

description:
CAI7247_168
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate3_A3P3_H08_N712_S516, Adult

description:
CAI7247_171
genes.fpkm_table
genes.attr_table
samples.table


title: 627965 Control

tag: rnaseq inclusion

value: Barbados

tag: barbados pc1

tag: barbados pc2


title: Exp2_KK86_Plate3_A3P3_F08_N712_S513, Adult

description:
CAI7247_169
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate3_A3P3_A08_N711_S518, Adult

description:
CAI7247_165
genes.fpkm_table
genes.attr_table
samples.table

value: Bulk Naive CD8+ T cells


title: 166137 NA

tag: site

tag: asthma


title: 476499 Control

tag: active asthma

tag: rin nasalepithelium


title: 928040 Control

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content

tag: nigeria pc1

tag: nigeria pc2


title: 888601 Control

tag: tissue

tag: full pc1

tag: full pc2


title: Exp2_KK86_Plate3_A3P3_G07_N711_S516, Adult

description:
CAI7247_163
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope

tag: age

tag: phenotype


title: Exp2_KK86_Plate3_A3P3_H07_N711_S517, Adult

description:
CAI7247_164
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate3_A3P3_F07_N711_S515, Adult

description:
CAI7247_162
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate3_A3P3_E07_N711_S513, Adult

description:
CAI7247_161
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate3_A3P3_D07_N710_S522, Adult

description:
CAI7247_160
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate3_A3P3_B07_N710_S520, Adult

description:
CAI7247_158
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate3_A3P3_A07_N710_S518, Adult

description:
CAI7247_157
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate3_A3P3_C07_N710_S521, Adult

description:
CAI7247_159
genes.fpkm_table
genes.attr_table
samples.table


title: 453708 Control

tag: Sex

tag: case control_definition

tag: rnaseq inclusion


title: 329359 Control

tag: site

tag: asthma


title: 431885 Control

tag: active asthma

tag: rin nasalepithelium

tag: barbados pc1

tag: barbados pc2


title: 762436 Control

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content


title: 649068 Control

tag: tissue

tag: full pc1


title: 336525 Control

tag: full pc2


title: 786989 Control


title: 804466 Control


title: 687859 Control


title: 972377 Control


title: 829601 Control


title: Exp2_KK86_Plate3_A3P3_D06_N707_S522, Adult

description:
CAI7247_152
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope


title: Exp2_KK86_Plate3_A3P3_H06_N710_S517, Adult

description:
CAI7247_156
genes.fpkm_table
genes.attr_table
samples.table

tag: age

tag: phenotype


title: Exp2_KK86_Plate3_A3P3_E06_N710_S513, Adult

description:
CAI7247_153
genes.fpkm_table
genes.attr_table
samples.table


title: 341925 Control

tag: Sex

tag: case control_definition


title: Exp2_KK86_Plate3_A3P3_G06_N710_S516, Adult

description:
CAI7247_155
genes.fpkm_table
genes.attr_table
samples.table


title: 345910 Control

tag: rnaseq inclusion

tag: site


title: 489217 Control

tag: asthma

tag: active asthma


title: Exp2_KK86_Plate3_A3P3_F06_N710_S515, Adult

description:
CAI7247_154
genes.fpkm_table
genes.attr_table
samples.table


title: 705370 Control

tag: rin nasalepithelium

tag: barbados pc1


title: Exp2_KK86_Plate3_A3P3_C06_N707_S521, Adult

description:
CAI7247_151
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate3_A3P3_B06_N707_S520, Adult

description:
CAI7247_150
genes.fpkm_table
genes.attr_table
samples.table


title: 121261 Control

tag: rnaseq libraryprep_batch

tag: barbados pc2


title: Exp2_KK86_Plate3_A3P3_H05_N707_S517, Adult

description:
CAI7247_148
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue


title: Exp2_KK86_Plate3_A3P3_G05_N707_S516, Adult

description:
CAI7247_147
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate3_A3P3_F05_N707_S515, Adult

description:
CAI7247_146
genes.fpkm_table
genes.attr_table
samples.table


title: 614420 Control

tag: rnaseq cg_content

tag: full pc1


title: Exp2_KK86_Plate3_A3P3_E05_N707_S513, Adult

description:
CAI7247_145
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type


title: 722540 Control

tag: full pc2


title: 611736 Control

tag: age


title: 422276 Control


title: Exp2_KK86_Plate3_A3P3_B05_N706_S521, Adult

description:
CAI7247_143
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope

tag: phenotype


title: Exp2_KK86_Plate3_A3P3_A05_N706_S520, Adult

description:
CAI7247_142
genes.fpkm_table
genes.attr_table
samples.table

tag: cell line

value: Bulk C1R

value: Bulk C1R cell line


title: 144449 Control

tag: Sex

value: Female

tag: case control_definition

value: Control

tag: rnaseq inclusion


title: 793383 Control

tag: site

tag: asthma

value: Not Asthmatic

tag: active asthma


title: 813122 Control

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch

tag: barbados pc1


title: 744924 Control

tag: tissue

tag: rnaseq cg_content

tag: barbados pc2


title: Exp2_KK86_Plate3_A3P3_A06_N707_S518, Adult

description:
CAI7247_149
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type


title: 762801 Control

tag: age

tag: full pc1

tag: full pc2


title: Exp2_KK86_Plate3_A3P3_D04_N706_S515, Adult

description:
CAI7247_138
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope

tag: phenotype


title: 351677 Control

tag: Sex

tag: case control_definition


title: Exp2_KK86_Plate3_A3P3_E04_N706_S516, Adult

description:
CAI7247_139
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate3_A3P3_C04_N706_S513, Adult

description:
CAI7247_137
genes.fpkm_table
genes.attr_table
samples.table


title: 337054 Control

tag: rnaseq inclusion

tag: site


title: 618377 Control

tag: asthma

tag: active asthma


title: 648387 Control

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch


title: Exp2_KK86_Plate3_A3P3_A04_N705_S521, Adult

description:
CAI7247_135
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

tag: cell line


title: Exp2_KK86_Plate3_A3P3_B04_N705_S522, Adult

description:
CAI7247_136
genes.fpkm_table
genes.attr_table
samples.table


title: 722500 Control

tag: rnaseq cg_content

tag: barbados pc1

tag: barbados pc2


title: Exp2_KK86_Plate3_A3P3_H03_N705_S520, Adult

description:
CAI7247_134
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: age


title: 611435 Control

value: Brazil

tag: full pc1

tag: full pc2

tag: brazil pc1

tag: brazil pc2


title: Exp2_KK86_Plate3_A3P3_G03_N705_S518, Adult

description:
CAI7247_133
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope

tag: phenotype


title: Exp2_KK86_Plate3_A3P3_C05_N706_S522, Adult

description:
CAI7247_144
genes.fpkm_table
genes.attr_table
samples.table

value: Tscm


title: Exp2_KK86_Plate3_A3P3_F03_N705_S517, Adult

description:
CAI7247_132
genes.fpkm_table
genes.attr_table
samples.table

value: Tcm


title: 171762 NA

tag: Sex

tag: case control_definition

tag: rnaseq inclusion

tag: site

tag: asthma


title: 285305 Control

tag: tissue

tag: active asthma

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch


title: Exp2_KK86_Plate3_A3P3_E03_N705_S516, Adult

description:
CAI7247_131
genes.fpkm_table
genes.attr_table
samples.table

value: PBMCs

tag: cell type


title: Exp2_KK86_Plate3_A3P3_C03_N705_S513, Adult

description:
CAI7247_129
genes.fpkm_table
genes.attr_table
samples.table

value: CD8+ T cell

tag: age


title: 714615 Control

tag: rnaseq cg_content

tag: full pc1


title: 232700 Control

tag: full pc2

tag: brazil pc1


title: Exp2_KK86_Plate3_A3P3_G04_N706_S518, Adult

description:
CAI7247_141
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope

value: Adult


title: Exp2_KK86_Plate3_A3P3_F04_N706_S517, Adult

description:
CAI7247_140
genes.fpkm_table
genes.attr_table
samples.table

tag: phenotype


title: Exp2_KK86_Plate3_A3P3_A03_N704_S521, Adult

description:
CAI7247_127
genes.fpkm_table
genes.attr_table
samples.table

tag: cell line


title: 322364 Control

tag: Sex

tag: case control_definition

tag: barbados pc1

tag: barbados pc2


title: Exp2_KK86_Plate3_A3P3_H02_N704_S520, Adult

description:
CAI7247_126
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue


title: 975610 Control

tag: rnaseq inclusion

tag: site

tag: asthma

tag: active asthma

tag: brazil pc2


title: 757930 Control

tag: age

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content


title: 931822 Control

tag: full pc1

tag: full pc2

tag: brazil pc1


title: Exp2_KK86_Plate3_A3P3_G02_N704_S518, Adult

description:
CAI7247_125
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope

tag: phenotype


title: 809108 Control

tag: Sex

tag: case control_definition


title: 653264 Control

tag: tissue

tag: rnaseq inclusion


title: 207900 Control

tag: site

tag: asthma


title: Exp2_KK86_Plate3_A3P3_C02_N704_S513, Adult

description:
CAI7247_121
genes.fpkm_table
genes.attr_table
samples.table

value: Tem


title: 587995 Control

value: Nasal Epithelium

tag: active asthma

tag: brazil pc2


title: Exp2_KK86_Plate3_A3P3_B02_N703_S522, Adult

description:
CAI7247_120
genes.fpkm_table
genes.attr_table
samples.table

tag: age


title: 822743 Control

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch


title: 902919 Control

tag: rnaseq cg_content

tag: full pc1


title: 636696 Control

tag: full pc2

tag: brazil pc1


title: Exp2_KK86_Plate3_A3P3_H01_N703_S521, Adult

description:
CAI7247_119
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope


title: Exp2_KK86_Plate3_A3P3_D03_N705_S515, Adult

description:
CAI7247_130
genes.fpkm_table
genes.attr_table
samples.table

tag: phenotype


title: 546902 Control

tag: Sex

tag: case control_definition


title: Exp2_KK86_Plate3_A3P3_G01_N703_S520, Adult

description:
CAI7247_118
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue


title: Exp2_KK86_Plate3_A3P3_E01_N703_S518, Adult

description:
CAI7247_117
genes.fpkm_table
genes.attr_table
samples.table


title: 720532 Control

tag: rnaseq inclusion

tag: site


title: 525691 Control

tag: asthma

tag: active asthma


title: Exp2_KK86_Plate3_A3P3_C01_N703_S517, Adult

description:
CAI7247_116
genes.fpkm_table
genes.attr_table
samples.table

tag: age


title: 750300 Control

value: Male

tag: rin nasalepithelium

tag: brazil pc2


title: Exp2_KK86_Plate3_A3P3_B01_N703_S516, Adult

description:
CAI7247_115
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate3_A3P3_E02_N704_S516, Adult

description:
CAI7247_123
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate2_A3P2_H10_N703_S515, Adult

description:
CAI7247_114
genes.fpkm_table
genes.attr_table
samples.table


title: 960141 Control

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content


title: 175634 Control

tag: full pc1

tag: full pc2


title: Exp2_KK86_Plate2_A3P2_F10_N702_S522, Adult

description:
CAI7247_112
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type


title: 935465 Control

tag: brazil pc1


title: Exp2_KK86_Plate3_A3P3_D02_N704_S515, Adult

description:
CAI7247_122
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope

tag: phenotype


title: 851525 Control

tag: Sex

tag: case control_definition


title: Exp2_KK86_Plate2_A3P2_E10_N702_S521, Adult

description:
CAI7247_111
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue


title: Exp2_KK86_Plate3_A3P3_F02_N704_S517, Adult

description:
CAI7247_124
genes.fpkm_table
genes.attr_table
samples.table

value: Temra


title: 305176 Control

tag: rnaseq inclusion

tag: site


title: Exp2_KK86_Plate3_A3P3_B03_N704_S522, Adult

description:
CAI7247_128
genes.fpkm_table
genes.attr_table
samples.table

value: Tnaive


title: Exp2_KK86_Plate2_A3P2_D10_N702_S520, Adult

description:
CAI7247_110
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate2_A3P2_B10_N702_S518, Adult

description:
CAI7247_109
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate2_A3P2_G10_N703_S513, Adult

description:
CAI7247_113
genes.fpkm_table
genes.attr_table
samples.table


title: 996192 Control

tag: asthma

tag: active asthma


title: 659774 Control

tag: age

tag: rin nasalepithelium


title: Exp2_KK86_Plate2_A3P2_H09_N702_S516, Adult

description:
CAI7247_107
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate2_A3P2_A10_N702_S517, Adult

description:
CAI7247_108
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate2_A3P2_G09_N702_S515, Adult

description:
CAI7247_106
genes.fpkm_table
genes.attr_table
samples.table


title: 593012 Control

tag: rnaseq libraryprep_batch

tag: brazil pc2


title: Exp2_KK86_Plate2_A3P2_F09_N702_S513, Adult

description:
CAI7247_105
genes.fpkm_table
genes.attr_table
samples.table


title: 994048 Control

tag: rnaseq cg_content

tag: full pc1


title: 599720 Control

tag: full pc2


title: Exp2_KK86_Plate2_A3P2_E09_N701_S522, Adult

description:
CAI7247_104
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type


title: 424087 Control

value: Washington DC

tag: washington dc_pc1

tag: washington dc_pc2


title: Exp2_KK86_Plate2_A3P2_D09_N701_S521, Adult

description:
CAI7247_103
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope

tag: phenotype


title: Exp2_KK86_Plate2_A3P2_B09_N701_S520, Adult

description:
CAI7247_102
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue


title: 451623 Control

tag: Sex

tag: case control_definition

tag: rnaseq inclusion


title: 908105 Control

tag: site

tag: asthma

tag: active asthma


title: Exp2_KK86_Plate2_A3P2_A09_N701_S518, Adult

description:
CAI7247_101
genes.fpkm_table
genes.attr_table
samples.table

tag: age


title: Exp2_KK86_Plate2_A3P2_H08_N701_S517, Adult

description:
CAI7247_100
genes.fpkm_table
genes.attr_table
samples.table


title: 147132 Control

tag: rnaseq libraryprep_batch


title: Exp2_KK86_Plate2_A3P2_G08_N701_S516, Adult

description:
CAI7247_099
genes.fpkm_table
genes.attr_table
samples.table


title: 187245 Control

tag: rin nasalepithelium

tag: rnaseq cg_content


title: Exp2_KK86_Plate2_A3P2_F08_N701_S515, Adult

description:
CAI7247_098
genes.fpkm_table
genes.attr_table
samples.table


title: 761251 Control

tag: full pc1

tag: full pc2


title: 759165 Control

tag: washington dc_pc1


title: 355348 Control

tag: brazil pc1

tag: brazil pc2


title: Exp2_KK86_Plate2_A3P2_E08_N701_S513, Adult

description:
CAI7247_097
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope

tag: phenotype


title: Exp2_KK86_Plate2_A3P2_D08_N715_S511, Adult

description:
CAI7247_096
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue


title: 821361 Control

tag: Sex

tag: case control_definition

tag: rnaseq inclusion

tag: washington dc_pc2


title: 543278 Control

tag: site

tag: age

tag: asthma

tag: active asthma


title: Exp2_KK86_Plate2_A3P2_B08_N715_S510, Adult

description:
CAI7247_095
genes.fpkm_table
genes.attr_table
samples.table


title: 823055 Control

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content

tag: full pc1


title: Exp2_KK86_Plate2_A3P2_H07_N715_S507, Adult

description:
CAI7247_093
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate2_A3P2_G07_N715_S506, Adult

description:
CAI7247_092
genes.fpkm_table
genes.attr_table
samples.table


title: 903689 Control

tag: full pc2

tag: washington dc_pc1


title: 329058 Control


title: 367305 Control


title: Exp2_KK86_Plate2_A3P2_F07_N715_S505, Adult

description:
CAI7247_091
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope


title: 157395 Control

tag: tissue


title: Exp2_KK86_Plate2_A3P2_D07_N715_S502, Adult

description:
CAI7247_089
genes.fpkm_table
genes.attr_table
samples.table

tag: phenotype


title: Exp2_KK86_Plate2_A3P2_C07_N714_S511, Adult

description:
CAI7247_088
genes.fpkm_table
genes.attr_table
samples.table


title: 171234 Control

tag: Sex

tag: case control_definition


title: Exp2_KK86_Plate2_A3P2_E07_N715_S503, Adult

description:
CAI7247_090
genes.fpkm_table
genes.attr_table
samples.table


title: 929889 Control

tag: rnaseq inclusion

tag: washington dc_pc2


title: 204531 Control

tag: site

tag: age


title: Exp2_KK86_Plate2_A3P2_B07_N714_S510, Adult

description:
CAI7247_087
genes.fpkm_table
genes.attr_table
samples.table


title: 640459 Control

value: Baltimore

tag: asthma

tag: active asthma

tag: baltimore pc1

tag: baltimore pc2


title: Exp2_KK86_Plate2_A3P2_A07_N714_S508, Adult

description:
CAI7247_086
genes.fpkm_table
genes.attr_table
samples.table

value: Bulk Naive CD8+ T cells


title: Exp2_KK86_Plate2_A3P2_H06_N714_S507, Adult

description:
CAI7247_085
genes.fpkm_table
genes.attr_table
samples.table


title: 377622 Control

value: Female

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content

tag: full pc1


title: 740939 Control

value: Control

tag: full pc2


title: 884075 Control

tag: tissue

value: Not Asthmatic


title: Exp2_KK86_Plate2_A3P2_F06_N714_S505, Adult

description:
CAI7247_083
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope

tag: phenotype


title: 182132 Control

tag: Sex

tag: case control_definition

tag: rnaseq inclusion


title: Exp2_KK86_Plate2_A3P2_A08_N715_S508, Adult

description:
CAI7247_094
genes.fpkm_table
genes.attr_table
samples.table

tag: age


title: Exp2_KK86_Plate2_A3P2_E06_N714_S503, Adult

description:
CAI7247_082
genes.fpkm_table
genes.attr_table
samples.table


title: 583516 Control

tag: site

tag: asthma


title: 937114 Control

tag: active asthma

tag: baltimore pc1


title: 185058 Control

tag: rin nasalepithelium

tag: baltimore pc2


title: Exp2_KK86_Plate2_A3P2_A06_N712_S510, Adult

description:
CAI7247_079
genes.fpkm_table
genes.attr_table
samples.table


title: 709203 Control

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content


title: Exp2_KK86_Plate2_A3P2_H05_N712_S508, Adult

description:
CAI7247_078
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate2_A3P2_B06_N712_S511, Adult

description:
CAI7247_080
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate2_A3P2_E05_N712_S505, Adult

description:
CAI7247_075
genes.fpkm_table
genes.attr_table
samples.table


title: 263787 NA


title: 261680 Control

tag: full pc1

tag: full pc2


title: 834571 Control

tag: tissue


title: Exp2_KK86_Plate2_A3P2_C06_N714_S502, Adult

description:
CAI7247_081
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope


title: Exp2_KK86_Plate2_A3P2_G05_N712_S507, Adult

description:
CAI7247_077
genes.fpkm_table
genes.attr_table
samples.table

tag: phenotype


title: Exp2_KK86_Plate2_A3P2_F05_N712_S506, Adult

description:
CAI7247_076
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate2_A3P2_B05_N712_S502, Adult

description:
CAI7247_073
genes.fpkm_table
genes.attr_table
samples.table


title: 723720 Control

tag: Sex

tag: case control_definition


title: 350808 Control

tag: rnaseq inclusion

tag: age


title: Exp2_KK86_Plate2_A3P2_G06_N714_S506, Adult

description:
CAI7247_084
genes.fpkm_table
genes.attr_table
samples.table


title: 227173 Control

tag: site

value: Chicago

tag: asthma

tag: chicago pc1

tag: chicago pc2


title: Exp2_KK86_Plate2_A3P2_A05_N711_S511, Adult

description:
CAI7247_072
genes.fpkm_table
genes.attr_table
samples.table

tag: cell line

value: Bulk C1R

value: Bulk C1R cell line


title: Exp2_KK86_Plate2_A3P2_H04_N711_S510, Adult

description:
CAI7247_071
genes.fpkm_table
genes.attr_table
samples.table

value: PBMCs

value: Tcm


title: Exp2_KK86_Plate2_A3P2_G04_N711_S508, Adult

description:
CAI7247_070
genes.fpkm_table
genes.attr_table
samples.table

value: CD8+ T cell

value: Adult


title: 404297 Control

value: Nasal Epithelium

tag: active asthma

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch


title: 613079 Control

value: Male

tag: rnaseq cg_content

tag: full pc1

tag: full pc2

tag: baltimore pc1

tag: baltimore pc2


title: Exp2_KK86_Plate2_A3P2_D04_N711_S505, Adult

description:
CAI7247_067
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

tag: cell type

tag: epitope

tag: phenotype

value: Tem


title: Exp2_KK86_Plate2_A3P2_E04_N711_S506, Adult

description:
CAI7247_068
genes.fpkm_table
genes.attr_table
samples.table

tag: age


title: 767804 Control

tag: Sex

tag: case control_definition

tag: rnaseq inclusion

tag: site

tag: asthma


title: Exp2_KK86_Plate2_A3P2_D05_N712_S503, Adult

description:
CAI7247_074
genes.fpkm_table
genes.attr_table
samples.table


title: 494540 Control

tag: active asthma

tag: rin nasalepithelium


title: 955250 Control

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content

tag: chicago pc1

tag: chicago pc2


title: 698056 Control

tag: full pc1

tag: full pc2


title: Exp2_KK86_Plate2_A3P2_B04_N711_S502, Adult

description:
CAI7247_065
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

tag: cell type

value: Tnaive


title: Exp2_KK86_Plate2_A3P2_A04_N710_S511, Adult

description:
CAI7247_064
genes.fpkm_table
genes.attr_table
samples.table

tag: cell line

tag: epitope

tag: phenotype


title: Exp2_KK86_Plate2_A3P2_H03_N710_S510, Adult

description:
CAI7247_063
genes.fpkm_table
genes.attr_table
samples.table

tag: age

value: Temra


title: Exp2_KK86_Plate2_A3P2_G03_N710_S508, Adult

description:
CAI7247_062
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate2_A3P2_C04_N711_S503, Adult

description:
CAI7247_066
genes.fpkm_table
genes.attr_table
samples.table


title: 570411 Control

tag: Sex

tag: case control_definition

tag: rnaseq inclusion


title: 539687 NA

tag: site

tag: asthma

tag: active asthma


title: 512903 Control

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content


title: 849126 Control

tag: full pc1

tag: chicago pc1

tag: chicago pc2


title: Exp2_KK86_Plate2_A3P2_F03_N710_S507, Adult

description:
CAI7247_061
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

tag: cell type


title: Exp2_KK86_Plate2_A3P2_E03_N710_S506, Adult

description:
CAI7247_060
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope


title: 197500 Control

value: Baltimore

tag: full pc2

tag: baltimore pc1

tag: baltimore pc2


title: Exp2_KK86_Plate2_A3P2_D03_N710_S505, Adult

description:
CAI7247_059
genes.fpkm_table
genes.attr_table
samples.table

tag: age

tag: phenotype


title: Exp2_KK86_Plate2_A3P2_F04_N711_S507, Adult

description:
CAI7247_069
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate2_A3P2_C03_N710_S503, Adult

description:
CAI7247_058
genes.fpkm_table
genes.attr_table
samples.table


title: 752990 Control

tag: Sex

tag: case control_definition

tag: rnaseq inclusion

tag: site


title: 969225 Control

tag: asthma

tag: active asthma

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch


title: 107687 Control

tag: rnaseq cg_content

tag: full pc1

tag: chicago pc1

tag: chicago pc2


title: 722046 Control

tag: tissue

tag: full pc2


title: Exp2_KK86_Plate2_A3P2_A03_N707_S511, Adult

description:
CAI7247_056
genes.fpkm_table
genes.attr_table
samples.table

tag: cell line

tag: cell type

tag: epitope


title: Exp2_KK86_Plate2_A3P2_H02_N707_S510, Adult

description:
CAI7247_055
genes.fpkm_table
genes.attr_table
samples.table

tag: age

tag: phenotype


title: 108994 Control

tag: Sex

tag: case control_definition

tag: rnaseq inclusion


title: 807903 Control

tag: site

tag: asthma

tag: active asthma


title: Exp2_KK86_Plate2_A3P2_G02_N707_S508, Adult

description:
CAI7247_054
genes.fpkm_table
genes.attr_table
samples.table


title: 791016 Control

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content


title: Exp2_KK86_Plate2_A3P2_B03_N710_S502, Adult

description:
CAI7247_057
genes.fpkm_table
genes.attr_table
samples.table


title: 581487 Control

tag: full pc1

tag: chicago pc1

tag: chicago pc2


title: Exp2_KK86_Plate2_A3P2_E02_N707_S507, Adult

description:
CAI7247_053
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue


title: Exp2_KK86_Plate2_A3P2_D02_N707_S506, Adult

description:
CAI7247_052
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type


title: 581375 Control

tag: full pc2


title: 730854 Control

tag: age


title: 636342 Control


title: Exp2_KK86_Plate2_A3P2_C02_N707_S505, Adult

description:
CAI7247_051
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope

tag: phenotype


title: Exp2_KK86_Plate2_A3P2_B02_N707_S503, Adult

description:
CAI7247_050
genes.fpkm_table
genes.attr_table
samples.table


title: 714009 Control

tag: Sex

tag: case control_definition


title: Exp2_KK86_Plate2_A3P2_G01_N706_S511, Adult

description:
CAI7247_048
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate2_A3P2_H01_N707_S502, Adult

description:
CAI7247_049
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate2_A3P2_E01_N706_S510, Adult

description:
CAI7247_047
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_KK86_Plate2_A3P2_F01_N706_S508, Adult

description:
CAI7247_046
genes.fpkm_table
genes.attr_table
samples.table


title: 724136 Control

tag: rnaseq inclusion

tag: site


title: 955144 Control

value: Denver

tag: asthma

tag: active asthma

tag: denver pc1

tag: denver pc2


title: 985385 Control

value: Female

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content

tag: full pc1


title: 496463 Control

tag: tissue

value: Control


title: Exp2_KK86_Plate2_A3P2_C01_N706_S506, Adult

description:
CAI7247_044
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type


title: Exp2_KK86_Plate2_A3P2_D01_N706_S507, Adult

description:
CAI7247_045
genes.fpkm_table
genes.attr_table
samples.table

tag: age


title: 541243 Control

value: Not Asthmatic

tag: full pc2


title: Exp2_KK86_Plate2_A3P2_B01_N706_S505, Adult

description:
CAI7247_043
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope

tag: phenotype


title: 230419 Control

tag: Sex

tag: case control_definition


title: 211401 Control

tag: rnaseq inclusion

tag: site


title: Exp2_TN029_Plate2_K3P2_A10_N705_S511, Child

description:
CAI7247_040
genes.fpkm_table
genes.attr_table
samples.table

value: Child


title: Exp2_TN029_Plate2_K3P2_B10_N706_S502, Child

description:
CAI7247_041
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_TN029_Plate2_K3P2_D10_N706_S503, Child

description:
CAI7247_042
genes.fpkm_table
genes.attr_table
samples.table

value: Tscm


title: 792185 Control

tag: asthma

tag: active asthma


title: 774819 Control

tag: denver pc1

tag: denver pc2


title: Exp2_TN029_Plate2_K3P2_D09_N705_S510, Child

description:
CAI7247_039
genes.fpkm_table
genes.attr_table
samples.table


title: 986020 Control

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch


title: Exp2_TN029_Plate2_K3P2_C09_N705_S508, Child

description:
CAI7247_038
genes.fpkm_table
genes.attr_table
samples.table


title: 658979 Control

value: Chicago

tag: rnaseq cg_content

tag: full pc1

tag: chicago pc1

tag: chicago pc2


title: 719799 Control

tag: tissue

tag: age

tag: full pc2


title: 869640 Control

tag: Sex


title: Exp2_TN029_Plate2_K3P2_C08_N705_S506, Child

description:
CAI7247_036
genes.fpkm_table
genes.attr_table
samples.table

value: PBMCs

tag: cell type

tag: epitope

tag: phenotype


title: 454922 Control

tag: case control_definition

tag: rnaseq inclusion

tag: site

tag: asthma


title: 177837 Control

value: Nigeria

tag: active asthma

tag: rin nasalepithelium

tag: nigeria pc1

tag: nigeria pc2


title: Exp2_TN029_Plate2_K3P2_A08_N705_S505, Child

description:
CAI7247_035
genes.fpkm_table
genes.attr_table
samples.table

value: Bulk Naive CD8+ T cells


title: 136030 Control

value: Barbados

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content

tag: full pc1

tag: barbados pc1

tag: barbados pc2


title: Exp2_TN029_Plate2_K3P2_B07_N705_S502, Child

description:
CAI7247_033
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

value: CD8+ T cell

tag: age

value: Tcm


title: Exp2_TN029_Plate2_K3P2_A07_N704_S511, Child

description:
CAI7247_032
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope


title: 459295 Control

value: Nasal Epithelium

tag: Sex

tag: case control_definition

value: Brazil

tag: full pc2

tag: brazil pc1

tag: brazil pc2


title: 705813 Control

tag: rnaseq inclusion

tag: site

tag: asthma

tag: active asthma

tag: rin nasalepithelium

tag: baltimore pc1

tag: baltimore pc2


title: Exp2_TN029_Plate2_K3P2_D06_N704_S510, Child

description:
CAI7247_031
genes.fpkm_table
genes.attr_table
samples.table

tag: phenotype


title: Exp2_TN029_Plate2_K3P2_B06_N704_S507, Child

description:
CAI7247_029
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue


title: 682222 Control

value: Male

tag: age

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content

tag: full pc1


title: 548023 Control

tag: Sex

tag: case control_definition


title: Exp2_TN029_Plate2_K3P2_A06_N704_S506, Child

description:
CAI7247_028
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope


title: Exp2_TN029_Plate2_K3P2_C05_N704_S505, Child

description:
CAI7247_027
genes.fpkm_table
genes.attr_table
samples.table

value: Tem


title: 731958 Control

tag: rnaseq inclusion

tag: full pc2

tag: chicago pc1

tag: chicago pc2


title: 838090 Case

value: Case

tag: site

value: Baltimore

tag: asthma

value: Asthmatic

tag: active asthma

value: Active Asthma

tag: rin nasalepithelium


title: Exp2_TN029_Plate2_K3P2_A05_N704_S502, Child

description:
CAI7247_025
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

tag: cell line

value: Bulk C1R

value: Bulk C1R cell line

value: Child

tag: phenotype


title: Exp2_TN029_Plate2_K3P2_B05_N704_S503, Child

description:
CAI7247_026
genes.fpkm_table
genes.attr_table
samples.table

value: PBMCs

tag: age


title: Exp2_TN029_Plate2_K3P2_C04_N703_S511, Child

description:
CAI7247_024
genes.fpkm_table
genes.attr_table
samples.table

value: Tnaive


title: 952199 Control

value: Female

value: Control

value: Denver

value: Not Asthmatic

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content

tag: full pc1

tag: denver pc1

tag: denver pc2


title: Exp2_TN029_Plate2_K3P2_D08_N705_S507, Child

description:
CAI7247_037
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

value: CD8+ T cell

tag: epitope

value: Tcm


title: Exp2_TN029_Plate2_K3P2_B04_N703_S510, Child

description:
CAI7247_023
genes.fpkm_table
genes.attr_table
samples.table


title: 358402 Case

value: Nasal Epithelium

tag: Sex

tag: case control_definition

tag: rnaseq inclusion

value: Chicago

tag: full pc2

tag: chicago pc1


title: 104409 Case

value: Case

tag: site

value: Brazil

tag: asthma

tag: active asthma

tag: brazil pc1

tag: brazil pc2


title: 340870 Case

tag: tissue

value: Washington DC

tag: age

value: Asthmatic

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch

tag: washington dc_pc1

tag: washington dc_pc2


title: Exp2_TN029_Plate2_K3P2_A04_N703_S508, Child

description:
CAI7247_022
genes.fpkm_table
genes.attr_table
samples.table

tag: cell line

value: Bulk C1R

tag: cell type

tag: epitope

tag: phenotype


title: Exp2_TN029_Plate2_K3P2_A03_N703_S506, Child

description:
CAI7247_020
genes.fpkm_table
genes.attr_table
samples.table

value: Bulk C1R cell line


title: 103468 Case

tag: Sex

value: Male

tag: case control_definition

tag: rnaseq inclusion

value: Active Asthma

tag: rnaseq cg_content

tag: full pc1

tag: full pc2


title: Exp2_TN029_Plate2_K3P2_C07_N705_S503, Child

description:
CAI7247_034
genes.fpkm_table
genes.attr_table
samples.table

value: PBMCs

value: Child

value: Tscm


title: 109823 Case

value: Female

tag: site

value: Barbados

tag: asthma

tag: active asthma

tag: barbados pc1

tag: barbados pc2


title: 725129 Control

tag: tissue

value: Control

tag: age

value: Not Asthmatic

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch


title: Exp2_TN029_Plate2_K3P2_C02_N703_S505, Child

description:
CAI7247_019
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

value: CD8+ T cell

tag: epitope

value: Tcm


title: Exp2_TN029_Plate2_K3P2_D03_N703_S507, Child

description:
CAI7247_021
genes.fpkm_table
genes.attr_table
samples.table

tag: phenotype


title: Exp2_TN029_Plate2_K3P2_C06_N704_S508, Child

description:
CAI7247_030
genes.fpkm_table
genes.attr_table
samples.table

value: Tnaive


title: 163297 Case

value: Nasal Epithelium

tag: Sex

tag: case control_definition

value: Case

value: Chicago

tag: chicago pc1

tag: chicago pc2


title: 706259 Case

tag: rnaseq inclusion

value: Asthmatic

tag: rnaseq cg_content

tag: full pc1

tag: full pc2


title: 200542 Case

tag: site

tag: asthma

tag: active asthma

tag: barbados pc1


title: 316932 Case

tag: tissue

tag: age

tag: barbados pc2


title: Exp2_TN029_Plate2_K3P2_B02_N703_S503, Child

description:
CAI7247_018
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope


title: 349987 Case

tag: Sex

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch


title: 227510 Case

tag: case control_definition


title: Exp2_TN029_Plate1_K3P1_H10_N702_S511, Child

description:
CAI7247_016
genes.fpkm_table
genes.attr_table
samples.table

tag: phenotype


title: 124119 Case

tag: rnaseq inclusion

value: Nigeria

tag: rnaseq cg_content

tag: nigeria pc1

tag: nigeria pc2


title: 593880 Case

tag: site

value: Brazil

tag: asthma

tag: full pc1

tag: full pc2

tag: brazil pc1

tag: brazil pc2


title: Exp2_TN029_Plate1_K3P1_C10_N702_S506, Child

description:
CAI7247_012
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

tag: cell type

tag: age


title: Exp2_TN029_Plate1_K3P1_D10_N702_S507, Child

description:
CAI7247_013
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope


title: 540484 Case

tag: Sex

value: Baltimore

tag: active asthma

value: Active Asthma

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch

tag: baltimore pc1

tag: baltimore pc2


title: Exp2_TN029_Plate1_K3P1_E10_N702_S508, Child

description:
CAI7247_014
genes.fpkm_table
genes.attr_table
samples.table

value: PBMCs

value: Child

tag: phenotype


title: Exp2_TN029_Plate1_K3P1_F10_N702_S510, Child

description:
CAI7247_015
genes.fpkm_table
genes.attr_table
samples.table

value: Tscm


title: 707831 Case

value: Male

tag: case control_definition

tag: rnaseq inclusion

tag: site

tag: rnaseq cg_content

tag: chicago pc1

tag: chicago pc2


title: 278336 Case

tag: tissue

tag: asthma

tag: full pc1

tag: full pc2

tag: nigeria pc1

tag: nigeria pc2


title: Exp2_TN029_Plate1_K3P1_G09_N701_S511, Child

description:
CAI7247_008
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope

tag: age

value: Temra


title: Exp2_TN029_Plate1_K3P1_A10_N702_S503, Child

description:
CAI7247_010
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_TN029_Plate1_K3P1_H09_N702_S502, Child

description:
CAI7247_009
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_TN029_Plate1_K3P1_B10_N702_S505, Child

description:
CAI7247_011
genes.fpkm_table
genes.attr_table
samples.table


title: 906682 Case

tag: Sex

value: Female

tag: active asthma

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch

tag: brazil pc1

tag: brazil pc2


title: Exp2_TN029_Plate2_K3P2_B01_N703_S502, Child

description:
CAI7247_017
genes.fpkm_table
genes.attr_table
samples.table

value: CD8+ T cell

tag: phenotype


title: Exp2_TN029_Plate1_K3P1_F09_N701_S510, Child

description:
CAI7247_007
genes.fpkm_table
genes.attr_table
samples.table

value: Tcm


title: Exp2_TN029_Plate1_K3P1_E09_N701_S508, Child

description:
CAI7247_006
genes.fpkm_table
genes.attr_table
samples.table


title: 692989 Case

tag: case control_definition

tag: rnaseq inclusion

tag: site

tag: rnaseq cg_content


title: 586096 Case

tag: tissue

tag: asthma

tag: full pc1

tag: full pc2


title: Exp2_TN029_Plate1_K3P1_D09_N701_S507, Child

description:
CAI7247_005
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope

value: Tnaive


title: Exp2_TN029_Plate1_K3P1_C09_N701_S506, Child

description:
CAI7247_004
genes.fpkm_table
genes.attr_table
samples.table

tag: age


title: Exp2_TN029_Plate1_K3P1_B09_N701_S505, Child

description:
CAI7247_003
genes.fpkm_table
genes.attr_table
samples.table


title: 970097 Case

value: Nasal Epithelium

tag: Sex

tag: active asthma

tag: baltimore pc1

tag: baltimore pc2


title: 788880 Case

value: Case

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch


title: Exp2_TN029_Plate1_K3P1_H08_N701_S502, Child

description:
CAI7247_001
genes.fpkm_table
genes.attr_table
samples.table

tag: phenotype


title: Exp1_TN029_Plate1_K3P1_G08_N729_S511, Child

description:
CAI7246A1_384
genes.fpkm_table
genes.attr_table
samples.table


title: Exp2_TN029_Plate1_K3P1_A09_N701_S503, Child

description:
CAI7247_002
genes.fpkm_table
genes.attr_table
samples.table


title: 339296 Case

tag: case control_definition

tag: rnaseq inclusion


title: 277677 Case

tag: site

value: Chicago

tag: rnaseq cg_content

tag: chicago pc1

tag: chicago pc2


title: Exp1_TN029_Plate1_K3P1_F08_N729_S510, Child

description:
CAI7246A1_383
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue


title: 177746 Case

value: Denver

tag: asthma

value: Asthmatic

tag: full pc1

tag: full pc2

tag: denver pc1

tag: denver pc2


title: Exp1_TN029_Plate1_K3P1_E08_N729_S508, Child

description:
CAI7246A1_382
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope

tag: age


title: 237325 Case

tag: Sex

tag: active asthma

tag: rnaseq libraryprep_batch


title: Exp1_TN029_Plate1_K3P1_D08_N729_S507, Child

description:
CAI7246A1_381
genes.fpkm_table
genes.attr_table
samples.table

tag: phenotype

value: Tem


title: 186072 Case

tag: case control_definition

tag: rnaseq inclusion

tag: site

value: Washington DC

tag: rin nasalepithelium

tag: washington dc_pc1

tag: washington dc_pc2


title: 546703 Case

tag: tissue

value: Nigeria

tag: asthma

value: Active Asthma

tag: rnaseq cg_content

tag: full pc1

tag: nigeria pc1

tag: nigeria pc2


title: 634631 Case

value: Barbados

tag: age

tag: full pc2

tag: barbados pc1

tag: barbados pc2


title: Exp1_TN029_Plate1_K3P1_C08_N729_S506, Child

description:
CAI7246A1_380
genes.fpkm_table
genes.attr_table
samples.table

value: PBMCs

tag: cell type

tag: epitope

value: Child

tag: phenotype


title: Exp1_TN029_Plate1_K3P1_B08_N729_S505, Child

description:
CAI7246A1_379
genes.fpkm_table
genes.attr_table
samples.table


title: 371760 Case

tag: Sex

tag: case control_definition

tag: rnaseq inclusion

tag: site

value: Baltimore

tag: active asthma

tag: rnaseq libraryprep_batch

tag: baltimore pc1

tag: baltimore pc2


title: 666800 Case

tag: tissue

value: Female

tag: asthma

tag: rin nasalepithelium

tag: rnaseq cg_content

tag: full pc1

tag: chicago pc1

tag: chicago pc2


title: 330031 Case

value: Male

tag: age

tag: full pc2

tag: denver pc1

tag: denver pc2


title: Exp1_TN029_Plate1_K3P1_D07_N728_S511, Child

description:
CAI7246A1_376
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

value: CD8+ T cell

tag: epitope

tag: phenotype


title: 270436 Case

tag: Sex

tag: case control_definition

tag: rnaseq inclusion

tag: site

tag: active asthma

tag: rnaseq libraryprep_batch


title: Exp1_TN029_Plate1_K3P1_A08_N729_S503, Child

description:
CAI7246A1_378
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

value: Bulk Naive CD8+ T cells


title: Exp1_TN029_Plate1_K3P1_E07_N729_S502, Child

description:
CAI7246A1_377
genes.fpkm_table
genes.attr_table
samples.table

value: Tcm


title: 952898 Case

value: Nasal Epithelium

value: Case

tag: asthma

tag: rin nasalepithelium

tag: rnaseq cg_content

tag: full pc1

tag: baltimore pc1

tag: baltimore pc2


title: Exp1_TN029_Plate1_K3P1_C07_N728_S510, Child

description:
CAI7246A1_375
genes.fpkm_table
genes.attr_table
samples.table

tag: age


title: 716595 Case

value: Chicago

tag: full pc2

tag: chicago pc1

tag: chicago pc2


title: 794388 Case

tag: Sex

value: Asthmatic


title: Exp1_TN029_Plate1_K3P1_B07_N728_S508, Child

description:
CAI7246A1_374
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope

tag: phenotype


title: 509779 Case

tag: case control_definition

tag: rnaseq inclusion

tag: site

tag: active asthma


title: Exp1_TN029_Plate1_K3P1_A07_N728_S507, Child

description:
CAI7246A1_373
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue


title: Exp1_TN029_Plate1_K3P1_G06_N728_S505, Child

description:
CAI7246A1_371
genes.fpkm_table
genes.attr_table
samples.table


title: 294650 Case

tag: asthma

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content

tag: nigeria pc1

tag: nigeria pc2


title: Exp1_TN029_Plate1_K3P1_H06_N728_S506, Child

description:
CAI7246A1_372
genes.fpkm_table
genes.attr_table
samples.table

tag: age


title: Exp1_TN029_Plate1_K3P1_E06_N728_S502, Child

description:
CAI7246A1_369
genes.fpkm_table
genes.attr_table
samples.table

value: Tem


title: 786811 Case

tag: full pc1

tag: full pc2

tag: baltimore pc1

tag: baltimore pc2


title: 293491 Case

tag: Sex

tag: barbados pc1

tag: barbados pc2


title: 438491 Case

tag: case control_definition

tag: rnaseq inclusion

tag: site


title: Exp1_TN029_Plate1_K3P1_D06_N727_S511, Child

description:
CAI7246A1_368
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

tag: cell type

tag: epitope

tag: phenotype


title: Exp1_TN029_Plate1_K3P1_A06_N727_S508, Child

description:
CAI7246A1_366
genes.fpkm_table
genes.attr_table
samples.table


title: 146520 Case

tag: asthma

tag: active asthma

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content


title: 422662 Case

value: Washington DC

tag: age

tag: full pc1

tag: full pc2

tag: washington dc_pc1

tag: washington dc_pc2


title: Exp1_TN029_Plate1_K3P1_C06_N727_S510, Child

description:
CAI7246A1_367
genes.fpkm_table
genes.attr_table
samples.table


title: 388836 NA

tag: Sex

tag: case control_definition


title: 747625 Case

tag: rnaseq inclusion

tag: site

value: Denver

tag: denver pc1

tag: denver pc2


title: Exp1_TN029_Plate1_K3P1_H05_N727_S507, Child

description:
CAI7246A1_365
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

tag: cell type

tag: epitope

tag: phenotype


title: 766563 Case

tag: asthma

tag: active asthma

value: Active Asthma

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch


title: 757465 Case

tag: age

tag: rnaseq cg_content

tag: full pc1

tag: full pc2


title: Exp1_TN029_Plate1_K3P1_E05_N727_S503, Child

description:
CAI7246A1_362
genes.fpkm_table
genes.attr_table
samples.table

value: Tnaive


title: Exp1_TN029_Plate1_K3P1_F05_N727_S505, Child

description:
CAI7246A1_363
genes.fpkm_table
genes.attr_table
samples.table

value: PBMCs


title: Exp1_TN029_Plate1_K3P1_C05_N726_S511, Child

description:
CAI7246A1_360
genes.fpkm_table
genes.attr_table
samples.table

value: Child


title: 632087 NA

tag: Sex

tag: case control_definition


title: 695124 NA

tag: rnaseq inclusion

tag: site


title: Exp1_TN029_Plate1_K3P1_F06_N728_S503, Child

description:
CAI7246A1_370
genes.fpkm_table
genes.attr_table
samples.table

value: Tscm


title: Exp1_TN029_Plate1_K3P1_B05_N726_S510, Child

description:
CAI7246A1_359
genes.fpkm_table
genes.attr_table
samples.table


title: 861237 NA

tag: denver pc1

tag: denver pc2


title: Exp1_TN029_Plate1_K3P1_A05_N726_S508, Child

description:
CAI7246A1_358
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

tag: cell line

value: Bulk C1R

tag: cell type

value: Bulk C1R cell line


title: Exp1_TN029_Plate1_K3P1_H04_N726_S507, Child

description:
CAI7246A1_357
genes.fpkm_table
genes.attr_table
samples.table

value: CD8+ T cell

tag: epitope

tag: phenotype


title: Exp1_TN029_Plate1_K3P1_G04_N726_S506, Child

description:
CAI7246A1_356
genes.fpkm_table
genes.attr_table
samples.table


title: 848708 Case

value: Female

value: Brazil

tag: asthma

tag: active asthma

tag: rin nasalepithelium

tag: brazil pc1

tag: brazil pc2


title: 688913 Case

value: Nasal Epithelium

value: Male

tag: age

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content

tag: full pc1

tag: full pc2


title: Exp1_TN029_Plate1_K3P1_F04_N726_S505, Child

description:
CAI7246A1_355
genes.fpkm_table
genes.attr_table
samples.table

value: Tcm


title: Exp1_TN029_Plate1_K3P1_E04_N726_S503, Child

description:
CAI7246A1_354
genes.fpkm_table
genes.attr_table
samples.table


title: Exp1_TN029_Plate1_K3P1_D04_N726_S502, Child

description:
CAI7246A1_353
genes.fpkm_table
genes.attr_table
samples.table


title: 319995 NA

tag: Sex

tag: case control_definition

tag: rnaseq inclusion

tag: site

value: Barbados

value: Asthmatic

value: Inactive Asthma

tag: barbados pc1

tag: barbados pc2


title: 796206 NA

tag: tissue


title: Exp1_TN029_Plate1_K3P1_C04_N724_S511, Child

description:
CAI7246A1_352
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope

tag: phenotype


title: Exp1_TN029_Plate1_K3P1_G05_N727_S506, Child

description:
CAI7246A1_364
genes.fpkm_table
genes.attr_table
samples.table


title: 212534 NA

value: Washington DC

tag: asthma

tag: active asthma

tag: rin nasalepithelium

tag: washington dc_pc1

tag: washington dc_pc2


title: 596338 NA

tag: age

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content

tag: full pc1

tag: brazil pc1

tag: brazil pc2


title: Exp1_TN029_Plate1_K3P1_B04_N724_S510, Child

description:
CAI7246A1_351
genes.fpkm_table
genes.attr_table
samples.table


title: Exp1_TN029_Plate1_K3P1_D05_N727_S502, Child

description:
CAI7246A1_361
genes.fpkm_table
genes.attr_table
samples.table


title: Exp1_TN029_Plate1_K3P1_A04_N724_S508, Child

description:
CAI7246A1_350
genes.fpkm_table
genes.attr_table
samples.table

tag: cell line


title: 146064 NA

tag: Sex

tag: case control_definition

tag: rnaseq inclusion

tag: site

tag: full pc2


title: 562895 NA

tag: tissue

tag: asthma


title: 479870 Case

value: Case

value: Denver

tag: active asthma

value: Active Asthma

tag: rin nasalepithelium

tag: denver pc1

tag: denver pc2


title: 921102 Case

value: Chicago

tag: age

tag: rnaseq libraryprep_batch

tag: chicago pc1

tag: chicago pc2


title: 836570 Control

value: Control

value: Not Asthmatic

tag: rnaseq cg_content

tag: full pc1


title: Exp1_TN029_Plate1_K3P1_H03_N724_S507, Child

description:
CAI7246A1_349
genes.fpkm_table
genes.attr_table
samples.table

value: PBMCs

tag: cell type

tag: epitope

value: Child

tag: phenotype


title: 903098 NA

tag: Sex

tag: case control_definition

tag: rnaseq inclusion

tag: site

tag: washington dc_pc1

tag: washington dc_pc2


title: Exp1_TN029_Plate1_K3P1_C03_N724_S503, Child

description:
CAI7246A1_346
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

value: CD8+ T cell


title: 695630 NA

value: Female

tag: asthma

tag: active asthma

tag: rin nasalepithelium

tag: full pc2


title: Exp1_TN029_Plate1_K3P1_F03_N724_S505, Child

description:
CAI7246A1_347
genes.fpkm_table
genes.attr_table
samples.table

tag: age


title: Exp1_TN029_Plate1_K3P1_B03_N724_S502, Child

description:
CAI7246A1_345
genes.fpkm_table
genes.attr_table
samples.table

value: Temra


title: 646317 NA

value: Nasal Epithelium

value: Baltimore

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content

tag: baltimore pc1

tag: baltimore pc2


title: Exp1_TN029_Plate1_K3P1_A03_N723_S511, Child

description:
CAI7246A1_344
genes.fpkm_table
genes.attr_table
samples.table

tag: cell line

value: Bulk C1R

tag: cell type

value: Bulk C1R cell line

tag: epitope

tag: phenotype


title: 285711 NA

tag: Sex

value: Male

tag: case control_definition

tag: rnaseq inclusion

tag: site

value: Nigeria

tag: full pc1

tag: nigeria pc1

tag: nigeria pc2


title: 139478 NA

tag: tissue

value: Washington DC

tag: asthma

value: Asthmatic

tag: active asthma

value: Inactive Asthma

tag: rin nasalepithelium

tag: full pc2

tag: washington dc_pc1

tag: washington dc_pc2


title: Exp1_TN029_Plate1_K3P1_G02_N723_S508, Child

description:
CAI7246A1_342
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: age

value: Tcm


title: 180495 Control

value: Control

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content


title: Exp1_TN029_Plate1_K3P1_F02_N723_S507, Child

description:
CAI7246A1_341
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope

tag: phenotype

value: Tnaive


title: Exp1_TN029_Plate1_K3P1_E02_N723_S506, Child

description:
CAI7246A1_340
genes.fpkm_table
genes.attr_table
samples.table

value: PBMCs


title: 367639 Control

tag: Sex

tag: case control_definition

tag: rnaseq inclusion

tag: site

value: Not Asthmatic


title: 998981 Control

tag: tissue

tag: full pc1

tag: nigeria pc1

tag: nigeria pc2


title: Exp1_TN029_Plate1_K3P1_D02_N723_S505, Child

description:
CAI7246A1_339
genes.fpkm_table
genes.attr_table
samples.table

value: CD8+ T cell

value: Child


title: Exp1_TN029_Plate1_K3P1_C02_N723_S503, Child

description:
CAI7246A1_338
genes.fpkm_table
genes.attr_table
samples.table


title: 420790 Control

value: Female

tag: asthma

tag: active asthma

tag: rin nasalepithelium

tag: full pc2


title: Exp1_TN029_Plate1_K3P1_H01_N723_S502, Child

description:
CAI7246A1_337
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: age


title: Exp1_TN029_Plate1_K3P1_G03_N724_S506, Child

description:
CAI7246A1_348
genes.fpkm_table
genes.attr_table
samples.table


title: 648570 Control

value: Nasal Epithelium

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content


title: 863906 Control


title: Exp1_TN029_Plate1_K3P1_G01_N722_S511, Child

description:
CAI7246A1_336
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope

tag: phenotype


title: 963760 NA

tag: Sex

tag: case control_definition

tag: washington dc_pc1

tag: washington dc_pc2


title: Exp1_TN029_Plate1_K3P1_E01_N722_S508, Child

description:
CAI7246A1_334
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

value: Tscm


title: Exp1_TN029_Plate1_K3P1_F01_N722_S510, Child

description:
CAI7246A1_335
genes.fpkm_table
genes.attr_table
samples.table


title: 900979 Control

tag: rnaseq inclusion

tag: site

tag: full pc1

tag: nigeria pc1


title: Exp1_TN029_Plate1_K3P1_C01_N722_S506, Child

description:
CAI7246A1_332
genes.fpkm_table
genes.attr_table
samples.table


title: 511453 Control

tag: asthma

tag: active asthma

tag: rin nasalepithelium

tag: nigeria pc2


title: 654911 NA

tag: age

tag: rnaseq libraryprep_batch


title: 443555 Control

tag: rnaseq cg_content

tag: full pc2


title: 397549 NA

tag: Sex


title: Exp1_TN029_Plate1_K3P1_B01_N722_S505, Child

description:
CAI7246A1_331
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope

tag: phenotype


title: Exp1_TN029_Plate1_K3P1_D01_N722_S507, Child

description:
CAI7246A1_333
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue


title: Exp1_TN029_Plate1_K3P1_H02_N723_S510, Child

description:
CAI7246A1_343
genes.fpkm_table
genes.attr_table
samples.table

value: Tem


title: 468799 Control

tag: case control_definition

tag: rnaseq inclusion


title: 439085 Control

tag: site

tag: full pc1


title: Exp1_CB146_Plate1_C3P1_F10_N722_S503, Newborn

description:
CAI7246A1_330
genes.fpkm_table
genes.attr_table
samples.table

value: Newborn


title: Exp1_CB146_Plate1_C3P1_E10_N722_S502, Newborn

description:
CAI7246A1_329
genes.fpkm_table
genes.attr_table
samples.table


title: 134720 Control

value: Male

tag: asthma

tag: nigeria pc1


title: Exp1_CB146_Plate1_C3P1_B10_N721_S511, Newborn

description:
CAI7246A1_328
genes.fpkm_table
genes.attr_table
samples.table


title: 402825 Control

value: Barbados

tag: active asthma

tag: rin nasalepithelium

tag: barbados pc1

tag: barbados pc2


title: 442674 Control

value: Nigeria

tag: age

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content

tag: nigeria pc2


title: Exp1_CB146_Plate1_C3P1_A10_N721_S510, Newborn

description:
CAI7246A1_327
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope


title: Exp1_CB146_Plate1_C3P1_F09_N721_S508, Newborn

description:
CAI7246A1_326
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

tag: phenotype


title: 503242 Control

tag: Sex

tag: case control_definition

tag: rnaseq inclusion

tag: full pc2


title: Exp1_CB146_Plate1_C3P1_E09_N721_S507, Newborn

description:
CAI7246A1_325
genes.fpkm_table
genes.attr_table
samples.table


title: 326838 Control

tag: site

value: Brazil

tag: asthma

tag: full pc1

tag: brazil pc1

tag: brazil pc2


title: Exp1_CB146_Plate1_C3P1_D09_N721_S506, Newborn

description:
CAI7246A1_324
genes.fpkm_table
genes.attr_table
samples.table

tag: age


title: 738286 Control

tag: active asthma

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch


title: Exp1_CB146_Plate1_C3P1_C09_N721_S505, Newborn

description:
CAI7246A1_323
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type


title: 655658 Control

tag: rnaseq cg_content

tag: barbados pc1

tag: barbados pc2


title: 269253 Control

tag: tissue

tag: Sex


title: Exp1_CB146_Plate1_C3P1_B09_N721_S503, Newborn

description:
CAI7246A1_322
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope

tag: phenotype


title: Exp1_CB146_Plate1_C3P1_A09_N721_S502, Newborn

description:
CAI7246A1_321
genes.fpkm_table
genes.attr_table
samples.table


title: 204928 Control

tag: case control_definition

tag: rnaseq inclusion

tag: site

tag: full pc2


title: 693458 NA

tag: asthma

tag: full pc1

tag: brazil pc1

tag: brazil pc2


title: 869128 Control

tag: age

tag: active asthma

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch


title: Exp1_CB146_Plate1_C3P1_E08_N720_S510, Newborn

description:
CAI7246A1_319
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type


title: Exp1_CB146_Plate1_C3P1_G08_N720_S511, Newborn

description:
CAI7246A1_320
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue


title: 923553 Control

tag: Sex

tag: rnaseq cg_content


title: Exp1_CB146_Plate1_C3P1_C08_N720_S507, Newborn

description:
CAI7246A1_317
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope

tag: phenotype


title: Exp1_CB146_Plate1_C3P1_D08_N720_S508, Newborn

description:
CAI7246A1_318
genes.fpkm_table
genes.attr_table
samples.table


title: 703700 Control

tag: case control_definition

tag: rnaseq inclusion


title: 239239 Control

tag: site

tag: full pc2

tag: nigeria pc1

tag: nigeria pc2


title: 807711 Control

tag: asthma

tag: full pc1

tag: brazil pc1

tag: brazil pc2


title: Exp1_CB146_Plate1_C3P1_G07_N720_S505, Newborn

description:
CAI7246A1_315
genes.fpkm_table
genes.attr_table
samples.table

tag: age


title: 526895 Control

tag: active asthma

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch


title: Exp1_CB146_Plate1_C3P1_E07_N720_S503, Newborn

description:
CAI7246A1_314
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

tag: cell type


title: Exp1_CB146_Plate1_C3P1_D07_N720_S502, Newborn

description:
CAI7246A1_313
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope

tag: phenotype


title: 362363 Control

tag: Sex

tag: case control_definition

tag: rnaseq inclusion

tag: rnaseq cg_content


title: 822179 Control

tag: site

tag: full pc2


title: Exp1_CB146_Plate1_C3P1_A07_N719_S510, Newborn

description:
CAI7246A1_311
genes.fpkm_table
genes.attr_table
samples.table

value: Bulk Naive CD8+ T cells


title: 657000 Control

tag: asthma

tag: full pc1


title: Exp1_CB146_Plate1_C3P1_H06_N719_S508, Newborn

description:
CAI7246A1_310
genes.fpkm_table
genes.attr_table
samples.table


title: Exp1_CB146_Plate1_C3P1_G06_N719_S507, Newborn

description:
CAI7246A1_309
genes.fpkm_table
genes.attr_table
samples.table


title: 998723 Control

tag: brazil pc1

tag: brazil pc2


title: 392634 Control

value: Washington DC

tag: age

tag: active asthma

tag: washington dc_pc1

tag: washington dc_pc2


title: Exp1_CB146_Plate1_C3P1_F06_N719_S506, Newborn

description:
CAI7246A1_308
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

tag: cell type


title: Exp1_CB146_Plate1_C3P1_E06_N719_S505, Newborn

description:
CAI7246A1_307
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope

tag: phenotype

value: Tcm


title: 526200 Control

tag: Sex

tag: case control_definition

value: Control

tag: rnaseq libraryprep_batch


title: 225803 Control

tag: rnaseq inclusion

tag: site

tag: rin nasalepithelium

tag: rnaseq cg_content


title: 489439 Control

tag: asthma

tag: full pc1

tag: full pc2


title: 329074 Control

tag: age

tag: active asthma


title: 732804 Control

tag: washington dc_pc1

tag: washington dc_pc2


title: Exp1_CB146_Plate1_C3P1_A08_N720_S506, Newborn

description:
CAI7246A1_316
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

value: PBMCs

tag: cell type


title: Exp1_CB146_Plate1_C3P1_C06_N719_S502, Newborn

description:
CAI7246A1_305
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope

tag: phenotype

value: Tnaive


title: Exp1_CB146_Plate1_C3P1_A06_N718_S510, Newborn

description:
CAI7246A1_303
genes.fpkm_table
genes.attr_table
samples.table


title: Exp1_CB146_Plate1_C3P1_B06_N718_S511, Newborn

description:
CAI7246A1_304
genes.fpkm_table
genes.attr_table
samples.table

value: CD8+ T cell


title: Exp1_CB146_Plate1_C3P1_D06_N719_S503, Newborn

description:
CAI7246A1_306
genes.fpkm_table
genes.attr_table
samples.table


title: 976267 NA

tag: Sex

tag: case control_definition

value: Not Asthmatic


title: Exp1_CB146_Plate1_C3P1_B07_N719_S511, Newborn

description:
CAI7246A1_312
genes.fpkm_table
genes.attr_table
samples.table


title: Exp1_CB146_Plate1_C3P1_H05_N718_S508, Newborn

description:
CAI7246A1_302
genes.fpkm_table
genes.attr_table
samples.table


title: Exp1_CB146_Plate1_C3P1_G05_N718_S507, Newborn

description:
CAI7246A1_301
genes.fpkm_table
genes.attr_table
samples.table


title: 930128 Control

value: Female

tag: rnaseq inclusion

tag: rnaseq libraryprep_batch


title: Exp1_CB146_Plate1_C3P1_E05_N718_S505, Newborn

description:
CAI7246A1_299
genes.fpkm_table
genes.attr_table
samples.table


title: 736647 Control

value: Nasal Epithelium

tag: site

tag: rin nasalepithelium


title: Exp1_CB146_Plate1_C3P1_D05_N718_S503, Newborn

description:
CAI7246A1_298
genes.fpkm_table
genes.attr_table
samples.table


title: 965888 Control

tag: asthma

tag: rnaseq cg_content


title: Exp1_CB146_Plate1_C3P1_F05_N718_S506, Newborn

description:
CAI7246A1_300
genes.fpkm_table
genes.attr_table
samples.table


title: 134880 Control

tag: full pc1

tag: full pc2


title: 770063 Control

tag: age

tag: active asthma


title: Exp1_CB146_Plate1_C3P1_H04_N716_S510, Newborn

description:
CAI7246A1_295
genes.fpkm_table
genes.attr_table
samples.table


title: Exp1_CB146_Plate1_C3P1_F04_N716_S508, Newborn

description:
CAI7246A1_294
genes.fpkm_table
genes.attr_table
samples.table


title: 158702 Control

tag: washington dc_pc1

tag: washington dc_pc2


title: 593787 Control

tag: tissue


title: Exp1_CB146_Plate1_C3P1_A05_N716_S511, Newborn

description:
CAI7246A1_296
genes.fpkm_table
genes.attr_table
samples.table

tag: cell line

value: Bulk C1R

tag: cell type

value: Bulk C1R cell line

tag: epitope


title: 585564 Control

tag: Sex

tag: case control_definition


title: Exp1_CB146_Plate1_C3P1_D04_N716_S506, Newborn

description:
CAI7246A1_292
genes.fpkm_table
genes.attr_table
samples.table

value: Newborn

tag: phenotype


title: 693783 Control

tag: rnaseq inclusion

tag: site

tag: rnaseq libraryprep_batch


title: 653272 Control

tag: asthma

tag: rin nasalepithelium

tag: rnaseq cg_content


title: Exp1_CB146_Plate1_C3P1_C04_N716_S505, Newborn

description:
CAI7246A1_291
genes.fpkm_table
genes.attr_table
samples.table

tag: age


title: Exp1_CB146_Plate1_C3P1_E04_N716_S507, Newborn

description:
CAI7246A1_293
genes.fpkm_table
genes.attr_table
samples.table


title: 127901 Control

tag: active asthma

tag: full pc1

tag: full pc2


title: 642866 Control

tag: tissue

tag: washington dc_pc1

tag: washington dc_pc2


title: 201266 Control


title: Exp1_CB146_Plate1_C3P1_H03_N716_S502, Newborn

description:
CAI7246A1_289
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope


title: Exp1_CB146_Plate1_C3P1_G03_N729_S522, Newborn

description:
CAI7246A1_288
genes.fpkm_table
genes.attr_table
samples.table


title: 889103 Control

tag: Sex

value: Male

tag: case control_definition


title: Exp1_CB146_Plate1_C3P1_F03_N729_S521, Newborn

description:
CAI7246A1_287
genes.fpkm_table
genes.attr_table
samples.table

tag: phenotype


title: Exp1_CB146_Plate1_C3P1_C03_N729_S518, Newborn

description:
CAI7246A1_285
genes.fpkm_table
genes.attr_table
samples.table


title: Exp1_CB146_Plate1_C3P1_C05_N718_S502, Newborn

description:
CAI7246A1_297
genes.fpkm_table
genes.attr_table
samples.table


title: Exp1_CB146_Plate1_C3P1_D03_N729_S520, Newborn

description:
CAI7246A1_286
genes.fpkm_table
genes.attr_table
samples.table


title: 318849 Control

tag: rnaseq inclusion

tag: site


title: 668288 Control

tag: asthma

tag: rnaseq libraryprep_batch


title: 987105 Control

value: Baltimore

tag: rin nasalepithelium

tag: rnaseq cg_content

tag: baltimore pc1

tag: baltimore pc2


title: Exp1_CB146_Plate1_C3P1_B03_N729_S517, Newborn

description:
CAI7246A1_284
genes.fpkm_table
genes.attr_table
samples.table

tag: age


title: 121658 Control

tag: tissue

tag: active asthma

tag: full pc1

tag: full pc2


title: Exp1_CB146_Plate1_C3P1_A03_N729_S516, Newborn

description:
CAI7246A1_283
genes.fpkm_table
genes.attr_table
samples.table

tag: cell line

tag: cell type

tag: epitope


title: 875950 Control

tag: Sex

tag: case control_definition


title: 292316 Control

tag: rnaseq inclusion

tag: site


title: Exp1_CB146_Plate1_C3P1_H02_N729_S515, Newborn

description:
CAI7246A1_282
genes.fpkm_table
genes.attr_table
samples.table

tag: phenotype


title: 822235 Control

tag: asthma

tag: rin nasalepithelium

tag: rnaseq libraryprep_batch


title: Exp1_CB146_Plate1_C3P1_G02_N729_S513, Newborn

description:
CAI7246A1_281
genes.fpkm_table
genes.attr_table
samples.table


title: Exp1_CB146_Plate1_C3P1_A04_N716_S503, Newborn

description:
CAI7246A1_290
genes.fpkm_table
genes.attr_table
samples.table


title: 906537 Control

tag: rnaseq cg_content

tag: baltimore pc1

tag: baltimore pc2


title: Exp1_CB146_Plate1_C3P1_F02_N728_S522, Newborn

description:
CAI7246A1_280
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

tag: age


title: Exp1_CB146_Plate1_C3P1_E02_N728_S521, Newborn

description:
CAI7246A1_279
genes.fpkm_table
genes.attr_table
samples.table


title: 887064 Control

tag: active asthma

tag: full pc1

tag: full pc2


title: 819062 Control


title: Exp1_CB146_Plate1_C3P1_B02_N728_S518, Newborn

description:
CAI7246A1_277
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope


title: Exp1_CB146_Plate1_C3P1_H01_N728_S517, Newborn

description:
CAI7246A1_276
genes.fpkm_table
genes.attr_table
samples.table


title: 562892 Control

tag: Sex

tag: case control_definition


title: Exp1_CB146_Plate1_C3P1_D02_N728_S520, Newborn

description:
CAI7246A1_278
genes.fpkm_table
genes.attr_table
samples.table


title: 613147 Control

tag: rnaseq inclusion

tag: site


title: Exp1_CB146_Plate1_C3P1_G01_N728_S516, Newborn

description:
CAI7246A1_275
genes.fpkm_table
genes.attr_table
samples.table

tag: phenotype


title: 670619 Control

tag: asthma

tag: rin nasalepithelium


title: 497401 Control

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content


title: 659790 Control

tag: baltimore pc1

tag: baltimore pc2


title: Exp1_CB146_Plate1_C3P1_E01_N728_S513, Newborn

description:
CAI7246A1_273
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

tag: age


title: 970590 Control

tag: active asthma

tag: full pc1


title: Exp1_CB146_Plate1_C3P1_F01_N728_S515, Newborn

description:
CAI7246A1_274
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type


title: Exp1_CB146_Plate1_C3P1_C01_N727_S521, Newborn

description:
CAI7246A1_271
genes.fpkm_table
genes.attr_table
samples.table

tag: epitope


title: Exp1_CB146_Plate1_C3P1_B01_N727_S520, Newborn

description:
CAI7246A1_270
genes.fpkm_table
genes.attr_table
samples.table


title: 184802 Control

tag: Sex

tag: full pc2


title: 349883 Control

tag: case control_definition

tag: rnaseq inclusion


title: 242744 Control

tag: site


title: Exp1_DMC19_Plate1_E3P1_B10_N727_S517, Older adult

description:
CAI7246A1_268
genes.fpkm_table
genes.attr_table
samples.table

value: Older adult

tag: phenotype


title: Exp1_DMC19_Plate1_E3P1_C10_N727_S518, Older adult

description:
CAI7246A1_269
genes.fpkm_table
genes.attr_table
samples.table


title: 971000 Control

tag: asthma

tag: rin nasalepithelium

tag: washington dc_pc1

tag: washington dc_pc2


title: Exp1_DMC19_Plate1_E3P1_A10_N727_S516, Older adult

description:
CAI7246A1_267
genes.fpkm_table
genes.attr_table
samples.table


title: 746366 Control

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content

tag: baltimore pc1

tag: baltimore pc2


title: 381964 Control

tag: tissue

tag: age

tag: active asthma

tag: full pc1


title: Exp1_DMC19_Plate1_E3P1_C09_N727_S515, Older adult

description:
CAI7246A1_266
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope


title: 524872 Control

tag: Sex

tag: case control_definition

tag: rnaseq inclusion

tag: full pc2


title: Exp1_DMC19_Plate1_E3P1_B09_N727_S513, Older adult

description:
CAI7246A1_265
genes.fpkm_table
genes.attr_table
samples.table

tag: phenotype


title: 977125 NA

tag: site

tag: asthma

tag: rin nasalepithelium


title: Exp1_DMC19_Plate1_E3P1_A09_N726_S522, Older adult

description:
CAI7246A1_264
genes.fpkm_table
genes.attr_table
samples.table

value: Tem


title: Exp1_DMC19_Plate1_E3P1_C08_N726_S521, Older adult

description:
CAI7246A1_263
genes.fpkm_table
genes.attr_table
samples.table


title: 617140 Control

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content


title: 562965 NA


title: Exp1_DMC19_Plate1_E3P1_B08_N726_S520, Older adult

description:
CAI7246A1_262
genes.fpkm_table
genes.attr_table
samples.table


title: Exp1_CB146_Plate1_C3P1_D01_N727_S522, Newborn

description:
CAI7246A1_272
genes.fpkm_table
genes.attr_table
samples.table


title: Exp1_DMC19_Plate1_E3P1_A08_N726_S518, Older adult

description:
CAI7246A1_261
genes.fpkm_table
genes.attr_table
samples.table

value: Bulk Naive CD8+ T cells


title: 208963 Control

value: Chicago

tag: chicago pc1

tag: chicago pc2


title: 983772 Control

tag: tissue

tag: age

tag: baltimore pc1

tag: baltimore pc2


title: Exp1_DMC19_Plate1_E3P1_C07_N726_S517, Older adult

description:
CAI7246A1_260
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope

value: Tcm


title: Exp1_DMC19_Plate1_E3P1_A07_N726_S515, Older adult

description:
CAI7246A1_258
genes.fpkm_table
genes.attr_table
samples.table


title: Exp1_DMC19_Plate1_E3P1_C06_N726_S513, Older adult

description:
CAI7246A1_257
genes.fpkm_table
genes.attr_table
samples.table


title: 602185 Control

tag: Sex

tag: case control_definition

value: Control

tag: active asthma

tag: full pc1


title: 314946 NA

tag: rnaseq inclusion

tag: site


title: 925429 Control

tag: asthma

tag: rin nasalepithelium

tag: full pc2


title: Exp1_DMC19_Plate1_E3P1_A06_N724_S521, Older adult

description:
CAI7246A1_255
genes.fpkm_table
genes.attr_table
samples.table

value: PBMCs

tag: phenotype


title: Exp1_DMC19_Plate1_E3P1_B07_N726_S516, Older adult

description:
CAI7246A1_259
genes.fpkm_table
genes.attr_table
samples.table


title: Exp1_DMC19_Plate1_E3P1_C05_N724_S520, Older adult

description:
CAI7246A1_254
genes.fpkm_table
genes.attr_table
samples.table


title: 345691 Control

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content

tag: chicago pc1

tag: chicago pc2


title: Exp1_DMC19_Plate1_E3P1_B05_N724_S518, Older adult

description:
CAI7246A1_253
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue

tag: age


title: 901190 Control


title: 106439 Control


title: Exp1_DMC19_Plate1_E3P1_A05_N724_S517, Older adult

description:
CAI7246A1_252
genes.fpkm_table
genes.attr_table
samples.table

tag: cell line

tag: cell type

tag: epitope


title: 962884 NA

tag: Sex

tag: case control_definition

tag: active asthma


title: 653062 Control

tag: rnaseq inclusion

tag: site

tag: full pc1


title: Exp1_DMC19_Plate1_E3P1_C04_N724_S516, Older adult

description:
CAI7246A1_251
genes.fpkm_table
genes.attr_table
samples.table


title: Exp1_DMC19_Plate1_E3P1_B04_N724_S515, Older adult

description:
CAI7246A1_250
genes.fpkm_table
genes.attr_table
samples.table


title: 380176 Control

tag: asthma

tag: rin nasalepithelium

tag: full pc2


title: 187045 Control

tag: rnaseq libraryprep_batch

tag: rnaseq cg_content


title: Exp1_DMC19_Plate1_E3P1_C03_N723_S522, Older adult

description:
CAI7246A1_248
genes.fpkm_table
genes.attr_table
samples.table

tag: phenotype


title: Exp1_DMC19_Plate1_E3P1_B03_N723_S521, Older adult

description:
CAI7246A1_247
genes.fpkm_table
genes.attr_table
samples.table

tag: tissue


title: 239067 Control

tag: age

tag: chicago pc1

tag: chicago pc2


title: 928810 Control


title: 736148 Control


title: Exp1_DMC19_Plate1_E3P1_C02_N723_S518, Older adult

description:
CAI7246A1_245
genes.fpkm_table
genes.attr_table
samples.table

tag: cell type

tag: epitope


title: Exp1_DMC19_Plate1_E3P1_B06_N724_S522, Older adult

description:
CAI7246A1_256
genes.fpkm_table
genes.attr_table
samples.table


title: Exp1_DMC19_Plate1_E3P1_B02_N723_S517, Older adult

description:
CAI7246A1_244
genes.fpkm_table
genes.attr_table
samples.table


title: 821473 Control

tag: Sex

tag: case control_definition


title: 114982 Control

tag: rnaseq inclusion

tag: active asthma


title: 182286 Control

tag: site

tag: full pc1


title: 344472 Control

tag: asthma

tag: rin nasalepithelium


title: Exp1_DMC19_Plate1_E3P1_D01_N723_S516, Older adult

description:
CAI7246A1_243
genes.fpkm_table
genes.attr_table
samples.table


title: 895834 Control

tag: rnaseq libraryprep_batch

tag: full pc2