title: GOYA RNASeq Sample 393

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500669_20160911


title: GOYA RNASeq Sample 391

status: Public on Feb 01 2019

type: SRA

city: SOUTH SAN FRANCISCO

first: Christopher

middle: Ryan

last: Bolen

state: CA

address: One DNA way

country: USA

institute: Genentech

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500666_20160827

library_source: transcriptomic

data_processing:
Alignment of reads performed using gsnap to GRCh38
Uniquely mapped reads were summarized to feature counts using the summarizeOverlaps function in BioC, & based on Gencode gene models. Only reads on the same strand as the feature were counted.
Genome_build: GRCh38
Supplementary_files_format_and_content: GOYA_stranded_counts.csv - generated by counting genomic features using the summarizeOverlaps function in BioC, & based on Gencode models.
Supplementary_files_format_and_content: GOYA_stranded_log2CPM.csv - Library sizes were calculated via DESeq2, and normalized log2 RPM values were calculated with limma-voom

molecule: polyA RNA

organism: Homo sapiens

source_name: DLBCL

extract_protocol:
RNA was isolated and purified from pre-treatment formalin fixed paraffin embedded (FFPE) biopsies using Qiagen’s FFPE RNAEasy preparation kits.
cDNA libraries were generated using TruSeq (Illumina) RNAseq

tag: treatment

value: Rituximab

tag: chemotherapy cycles

tag: cell of origin

value: GCB

tag: ipi

value: High

tag: region

value: Western Europe

tag: pfstt

tag: pfscs

tag: ostt

tag: oscs

tag: Sex

value: Female


title: GOYA RNASeq Sample 388

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500663_20160827

value: High-Intermediate

value: Male


title: GOYA RNASeq Sample 389

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500664_20160910


title: GOYA RNASeq Sample 387

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500662_20160827


title: GOYA RNASeq Sample 390

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500665_20160827


title: GOYA RNASeq Sample 380

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500655_20160906

value: Low


title: GOYA RNASeq Sample 382

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500657_20160905

value: ABC


title: GOYA RNASeq Sample 383

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500658_20160905


title: GOYA RNASeq Sample 384

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500659_20160906


title: GOYA RNASeq Sample 386

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500661_20160827

value: UNCLASSIFIED


title: GOYA RNASeq Sample 381

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500656_20160905


title: GOYA RNASeq Sample 385

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500660_20160906


title: GOYA RNASeq Sample 377

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500644_20160905

value: Low-Intermediate


title: GOYA RNASeq Sample 404

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500690_20160827

value: Other


title: GOYA RNASeq Sample 375

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500642_20160905


title: GOYA RNASeq Sample 378

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500645_20160905


title: GOYA RNASeq Sample 379

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500646_20160905


title: GOYA RNASeq Sample 399

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500676_20160901

value: Asia


title: GOYA RNASeq Sample 373

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500639_20160827


title: GOYA RNASeq Sample 372

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500638_20160901


title: GOYA RNASeq Sample 374

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500641_20160910


title: GOYA RNASeq Sample 371

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500637_20160827


title: GOYA RNASeq Sample 369

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500634_20160827


title: GOYA RNASeq Sample 392

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500668_20160827


title: GOYA RNASeq Sample 366

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500630_20160827


title: GOYA RNASeq Sample 365

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500629_20160827


title: GOYA RNASeq Sample 367

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500632_20160827


title: GOYA RNASeq Sample 370

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500635_20160827


title: GOYA RNASeq Sample 362

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500625_20160827


title: GOYA RNASeq Sample 368

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500633_20160827


title: GOYA RNASeq Sample 360

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500622_20160828


title: GOYA RNASeq Sample 364

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500628_20160827


title: GOYA RNASeq Sample 361

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500624_20160827


title: GOYA RNASeq Sample 376

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500643_20160905


title: GOYA RNASeq Sample 353

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500599_20160904


title: GOYA RNASeq Sample 354

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500600_20160901


title: GOYA RNASeq Sample 358

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500611_20160827

value: North America


title: GOYA RNASeq Sample 359

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500618_20160828


title: GOYA RNASeq Sample 352

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500598_20160901


title: GOYA RNASeq Sample 351

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500597_20160827


title: GOYA RNASeq Sample 357

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500610_20160827


title: GOYA RNASeq Sample 350

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500596_20160827


title: GOYA RNASeq Sample 356

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500608_20160827


title: GOYA RNASeq Sample 355

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500602_20160827


title: GOYA RNASeq Sample 348

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500593_20160827


title: GOYA RNASeq Sample 347

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500592_20160827


title: GOYA RNASeq Sample 349

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500595_20160827


title: GOYA RNASeq Sample 345

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500590_20160827


title: GOYA RNASeq Sample 344

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500562_20160905


title: GOYA RNASeq Sample 343

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500561_20160905


title: GOYA RNASeq Sample 342

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500559_20160905


title: GOYA RNASeq Sample 341

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500556_20160905


title: GOYA RNASeq Sample 346

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500591_20160827


title: GOYA RNASeq Sample 363

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500626_20160827


title: GOYA RNASeq Sample 340

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500554_20160905


title: GOYA RNASeq Sample 339

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500552_20160907


title: GOYA RNASeq Sample 337

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500546_20160905


title: GOYA RNASeq Sample 338

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500550_20160905


title: GOYA RNASeq Sample 336

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500545_20160905


title: GOYA RNASeq Sample 335

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500542_20160905


title: GOYA RNASeq Sample 334

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500535_20160906


title: GOYA RNASeq Sample 333

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500533_20160905


title: GOYA RNASeq Sample 330

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500530_20160905


title: GOYA RNASeq Sample 332

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500532_20160905


title: GOYA RNASeq Sample 328

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500528_20160911


title: GOYA RNASeq Sample 329

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500529_20160906


title: GOYA RNASeq Sample 327

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500527_20160910


title: GOYA RNASeq Sample 324

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500521_20160906


title: GOYA RNASeq Sample 331

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500531_20160828


title: GOYA RNASeq Sample 322

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500519_20160906


title: GOYA RNASeq Sample 325

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500522_20160905


title: GOYA RNASeq Sample 318

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500514_20160906


title: GOYA RNASeq Sample 320

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500517_20160827


title: GOYA RNASeq Sample 319

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500515_20160910


title: GOYA RNASeq Sample 323

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500520_20160905


title: GOYA RNASeq Sample 317

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500512_20160910


title: GOYA RNASeq Sample 315

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500509_20160906


title: GOYA RNASeq Sample 316

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500511_20160906


title: GOYA RNASeq Sample 312

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500505_20160905


title: GOYA RNASeq Sample 314

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500508_20160905


title: GOYA RNASeq Sample 313

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500507_20160906


title: GOYA RNASeq Sample 311

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500504_20160901


title: GOYA RNASeq Sample 308

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500498_20160905


title: GOYA RNASeq Sample 307

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500497_20160905


title: GOYA RNASeq Sample 305

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500495_20160905


title: GOYA RNASeq Sample 310

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500503_20160905


title: GOYA RNASeq Sample 309

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500500_20160905


title: GOYA RNASeq Sample 304

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500492_20160905


title: GOYA RNASeq Sample 326

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500526_20160905


title: GOYA RNASeq Sample 302

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500490_20160905


title: GOYA RNASeq Sample 321

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500518_20160905


title: GOYA RNASeq Sample 301

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500489_20160905


title: GOYA RNASeq Sample 303

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500491_20160905


title: GOYA RNASeq Sample 299

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500487_20160905


title: GOYA RNASeq Sample 298

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500486_20160916


title: GOYA RNASeq Sample 300

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500488_20160906


title: GOYA RNASeq Sample 296

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500483_20160916


title: GOYA RNASeq Sample 295

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500482_20160916


title: GOYA RNASeq Sample 294

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500480_20160910


title: GOYA RNASeq Sample 297

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500485_20160910


title: GOYA RNASeq Sample 293

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500478_20160827


title: GOYA RNASeq Sample 289

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500464_20160827


title: GOYA RNASeq Sample 291

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500466_20160829


title: GOYA RNASeq Sample 292

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500477_20160827


title: GOYA RNASeq Sample 290

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500465_20160827


title: GOYA RNASeq Sample 286

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500460_20160827


title: GOYA RNASeq Sample 285

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500459_20160827


title: GOYA RNASeq Sample 288

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500462_20160827


title: GOYA RNASeq Sample 306

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500496_20160905


title: GOYA RNASeq Sample 287

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500461_20160827


title: GOYA RNASeq Sample 284

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500456_20160827


title: GOYA RNASeq Sample 280

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500451_20160827


title: GOYA RNASeq Sample 281

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500452_20160829


title: GOYA RNASeq Sample 283

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500455_20160827


title: GOYA RNASeq Sample 278

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500449_20160827


title: GOYA RNASeq Sample 277

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500447_20160827


title: GOYA RNASeq Sample 279

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500450_20160827


title: GOYA RNASeq Sample 276

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500446_20160827


title: GOYA RNASeq Sample 273

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500437_20160827


title: GOYA RNASeq Sample 271

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500435_20160829


title: GOYA RNASeq Sample 274

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500438_20160827


title: GOYA RNASeq Sample 272

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500436_20160827


title: GOYA RNASeq Sample 269

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500433_20160827


title: GOYA RNASeq Sample 275

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500439_20160829


title: GOYA RNASeq Sample 270

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500434_20160827


title: GOYA RNASeq Sample 266

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500430_20160827


title: GOYA RNASeq Sample 265

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500412_20160827


title: GOYA RNASeq Sample 264

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500411_20160827


title: GOYA RNASeq Sample 268

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500432_20160828


title: GOYA RNASeq Sample 262

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500409_20160827


title: GOYA RNASeq Sample 263

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500410_20160827


title: GOYA RNASeq Sample 282

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500454_20160827


title: GOYA RNASeq Sample 267

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500431_20160827


title: GOYA RNASeq Sample 261

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500407_20160827


title: GOYA RNASeq Sample 254

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500396_20160827


title: GOYA RNASeq Sample 259

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500405_20160827


title: GOYA RNASeq Sample 258

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500404_20160827


title: GOYA RNASeq Sample 256

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500400_20160827


title: GOYA RNASeq Sample 253

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500395_20160827


title: GOYA RNASeq Sample 252

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500393_20160827


title: GOYA RNASeq Sample 251

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500382_20160907


title: GOYA RNASeq Sample 247

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500370_20160908


title: GOYA RNASeq Sample 245

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500368_20160905


title: GOYA RNASeq Sample 240

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500363_20160907


title: GOYA RNASeq Sample 239

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500362_20160907


title: GOYA RNASeq Sample 241

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500364_20160907


title: GOYA RNASeq Sample 244

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500367_20160906


title: GOYA RNASeq Sample 238

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500361_20160926


title: GOYA RNASeq Sample 237

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500358_20160907


title: GOYA RNASeq Sample 260

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500406_20160827


title: GOYA RNASeq Sample 255

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500398_20160827


title: GOYA RNASeq Sample 235

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500356_20160827


title: GOYA RNASeq Sample 236

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500357_20160827


title: GOYA RNASeq Sample 257

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500401_20160827


title: GOYA RNASeq Sample 234

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500355_20160904

value: Eastern Europe


title: GOYA RNASeq Sample 232

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500353_20160905


title: GOYA RNASeq Sample 233

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500354_20160905


title: GOYA RNASeq Sample 250

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500380_20160908


title: GOYA RNASeq Sample 231

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500352_20160827


title: GOYA RNASeq Sample 230

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500351_20160912


title: GOYA RNASeq Sample 227

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500347_20160908


title: GOYA RNASeq Sample 248

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500376_20160906


title: GOYA RNASeq Sample 224

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500344_20160905


title: GOYA RNASeq Sample 249

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500377_20160907


title: GOYA RNASeq Sample 225

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500345_20160827


title: GOYA RNASeq Sample 243

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500366_20160904


title: GOYA RNASeq Sample 242

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500365_20160904


title: GOYA RNASeq Sample 246

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500369_20160905


title: GOYA RNASeq Sample 218

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500301_20160905


title: GOYA RNASeq Sample 223

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500338_20160904


title: GOYA RNASeq Sample 220

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500320_20160905


title: GOYA RNASeq Sample 222

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500331_20160827


title: GOYA RNASeq Sample 221

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500321_20160827


title: GOYA RNASeq Sample 216

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500299_20160908


title: GOYA RNASeq Sample 211

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500294_20160827


title: GOYA RNASeq Sample 228

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500349_20160906


title: GOYA RNASeq Sample 215

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500298_20160907


title: GOYA RNASeq Sample 206

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500289_20160827


title: GOYA RNASeq Sample 204

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500287_20160907


title: GOYA RNASeq Sample 208

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500291_20160827


title: GOYA RNASeq Sample 203

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500286_20160901


title: GOYA RNASeq Sample 229

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500350_20160906


title: GOYA RNASeq Sample 214

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500297_20160827


title: GOYA RNASeq Sample 213

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500296_20160827


title: GOYA RNASeq Sample 212

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500295_20160827


title: GOYA RNASeq Sample 226

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500346_20160907


title: GOYA RNASeq Sample 201

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500284_20160901


title: GOYA RNASeq Sample 199

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500282_20160901


title: GOYA RNASeq Sample 207

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500290_20160827


title: GOYA RNASeq Sample 205

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500288_20160827


title: GOYA RNASeq Sample 210

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500293_20160904


title: GOYA RNASeq Sample 198

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500281_20160905


title: GOYA RNASeq Sample 194

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500274_20160901


title: GOYA RNASeq Sample 196

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500276_20160908


title: GOYA RNASeq Sample 202

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500285_20160901


title: GOYA RNASeq Sample 195

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500275_20160908


title: GOYA RNASeq Sample 217

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500300_20160827


title: GOYA RNASeq Sample 193

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500273_20160901


title: GOYA RNASeq Sample 219

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500319_20160827


title: GOYA RNASeq Sample 192

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500272_20160901


title: GOYA RNASeq Sample 197

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500280_20160905


title: GOYA RNASeq Sample 191

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500271_20160827


title: GOYA RNASeq Sample 209

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500292_20160905


title: GOYA RNASeq Sample 190

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500269_20160905


title: GOYA RNASeq Sample 188

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500267_20160913


title: GOYA RNASeq Sample 189

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500268_20160904


title: GOYA RNASeq Sample 200

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500283_20160901


title: GOYA RNASeq Sample 184

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500262_20160901


title: GOYA RNASeq Sample 182

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500260_20160901


title: GOYA RNASeq Sample 183

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500261_20160926


title: GOYA RNASeq Sample 180

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500258_20160905


title: GOYA RNASeq Sample 187

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500266_20160905


title: GOYA RNASeq Sample 179

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500249_20160901


title: GOYA RNASeq Sample 186

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500265_20160901


title: GOYA RNASeq Sample 177

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500246_20160906


title: GOYA RNASeq Sample 174

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500241_20160901


title: GOYA RNASeq Sample 175

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500242_20160905


title: GOYA RNASeq Sample 185

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500263_20160907


title: GOYA RNASeq Sample 178

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500247_20160910


title: GOYA RNASeq Sample 176

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500243_20160827


title: GOYA RNASeq Sample 173

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500240_20160907


title: GOYA RNASeq Sample 181

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500259_20160901


title: GOYA RNASeq Sample 171

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500238_20160901


title: GOYA RNASeq Sample 170

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500237_20160901


title: GOYA RNASeq Sample 172

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500239_20160901


title: GOYA RNASeq Sample 169

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500236_20160901


title: GOYA RNASeq Sample 168

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500235_20160901


title: GOYA RNASeq Sample 166

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500233_20160827


title: GOYA RNASeq Sample 164

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500230_20160905


title: GOYA RNASeq Sample 165

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500231_20160926


title: GOYA RNASeq Sample 163

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500229_20160901


title: GOYA RNASeq Sample 162

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500228_20160827


title: GOYA RNASeq Sample 160

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500210_20160910


title: GOYA RNASeq Sample 161

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500211_20160901


title: GOYA RNASeq Sample 159

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500209_20160905


title: GOYA RNASeq Sample 158

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500207_20160910


title: GOYA RNASeq Sample 157

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500206_20160910


title: GOYA RNASeq Sample 156

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500205_20160908


title: GOYA RNASeq Sample 155

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500204_20160827


title: GOYA RNASeq Sample 154

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500203_20160907


title: GOYA RNASeq Sample 151

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500200_20160901


title: GOYA RNASeq Sample 152

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500201_20160901


title: GOYA RNASeq Sample 150

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500198_20160905


title: GOYA RNASeq Sample 148

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500196_20160906


title: GOYA RNASeq Sample 146

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500193_20160907


title: GOYA RNASeq Sample 149

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500197_20160906


title: GOYA RNASeq Sample 144

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500189_20160827


title: GOYA RNASeq Sample 147

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500194_20160916


title: GOYA RNASeq Sample 145

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500192_20160827


title: GOYA RNASeq Sample 143

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500188_20160827


title: GOYA RNASeq Sample 142

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500186_20160907


title: GOYA RNASeq Sample 141

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500185_20160907


title: GOYA RNASeq Sample 140

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500184_20160906


title: GOYA RNASeq Sample 138

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500182_20160827


title: GOYA RNASeq Sample 137

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500181_20160827


title: GOYA RNASeq Sample 167

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500234_20160905


title: GOYA RNASeq Sample 139

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500183_20160827


title: GOYA RNASeq Sample 136

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500179_20160827


title: GOYA RNASeq Sample 132

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500174_20160908


title: GOYA RNASeq Sample 131

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500173_20160908


title: GOYA RNASeq Sample 130

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500172_20160908


title: GOYA RNASeq Sample 133

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500176_20160827


title: GOYA RNASeq Sample 153

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500202_20160901


title: GOYA RNASeq Sample 129

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500171_20160827


title: GOYA RNASeq Sample 126

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500168_20160827


title: GOYA RNASeq Sample 127

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500169_20160907


title: GOYA RNASeq Sample 128

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500170_20160928


title: GOYA RNASeq Sample 125

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500166_20160827


title: GOYA RNASeq Sample 124

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500165_20160908


title: GOYA RNASeq Sample 123

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500164_20160827


title: GOYA RNASeq Sample 121

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500161_20160908


title: GOYA RNASeq Sample 122

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500162_20160907


title: GOYA RNASeq Sample 118

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500157_20160908


title: GOYA RNASeq Sample 120

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500159_20160907


title: GOYA RNASeq Sample 117

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500155_20160827


title: GOYA RNASeq Sample 116

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500153_20160906


title: GOYA RNASeq Sample 115

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500152_20160907


title: GOYA RNASeq Sample 114

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500151_20160907


title: GOYA RNASeq Sample 135

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500178_20160827


title: GOYA RNASeq Sample 113

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500150_20160908


title: GOYA RNASeq Sample 112

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500149_20160908


title: GOYA RNASeq Sample 110

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500145_20160908


title: GOYA RNASeq Sample 111

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500147_20160908


title: GOYA RNASeq Sample 108

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500143_20160907


title: GOYA RNASeq Sample 134

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500177_20160827


title: GOYA RNASeq Sample 109

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500144_20160827


title: GOYA RNASeq Sample 107

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500142_20160907


title: GOYA RNASeq Sample 106

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500141_20160908


title: GOYA RNASeq Sample 104

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500139_20160907


title: GOYA RNASeq Sample 105

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500140_20160908


title: GOYA RNASeq Sample 103

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500138_20160916


title: GOYA RNASeq Sample 102

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500137_20160908


title: GOYA RNASeq Sample 101

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500136_20160908


title: GOYA RNASeq Sample 119

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500158_20160908


title: GOYA RNASeq Sample 100

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500135_20160908


title: GOYA RNASeq Sample 098

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500133_20160907


title: GOYA RNASeq Sample 097

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500132_20160827


title: GOYA RNASeq Sample 096

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500131_20160907


title: GOYA RNASeq Sample 099

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500134_20160908


title: GOYA RNASeq Sample 095

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500129_20160908


title: GOYA RNASeq Sample 093

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500127_20160908


title: GOYA RNASeq Sample 090

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500119_20160827


title: GOYA RNASeq Sample 094

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500128_20160908


title: GOYA RNASeq Sample 091

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500120_20160908


title: GOYA RNASeq Sample 089

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500118_20160907


title: GOYA RNASeq Sample 086

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500115_20160907


title: GOYA RNASeq Sample 088

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500117_20160908


title: GOYA RNASeq Sample 087

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500116_20160908


title: GOYA RNASeq Sample 085

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500114_20160908


title: GOYA RNASeq Sample 082

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500107_20160916


title: GOYA RNASeq Sample 081

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500106_20160908


title: GOYA RNASeq Sample 080

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500105_20160908


title: GOYA RNASeq Sample 079

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500104_20160907


title: GOYA RNASeq Sample 078

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500103_20160907


title: GOYA RNASeq Sample 083

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500108_20160908


title: GOYA RNASeq Sample 074

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500099_20160926


title: GOYA RNASeq Sample 076

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500101_20160908


title: GOYA RNASeq Sample 073

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500098_20160926


title: GOYA RNASeq Sample 077

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500102_20160908


title: GOYA RNASeq Sample 070

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500095_20160904


title: GOYA RNASeq Sample 067

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500091_20160901


title: GOYA RNASeq Sample 071

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500096_20160827


title: GOYA RNASeq Sample 068

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500092_20160828


title: GOYA RNASeq Sample 063

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500086_20160827


title: GOYA RNASeq Sample 084

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500113_20160908


title: GOYA RNASeq Sample 061

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500084_20160906


title: GOYA RNASeq Sample 059

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500082_20160827


title: GOYA RNASeq Sample 056

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500078_20160827


title: GOYA RNASeq Sample 054

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500076_20160911


title: GOYA RNASeq Sample 055

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500077_20160901


title: GOYA RNASeq Sample 053

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500074_20160901


title: GOYA RNASeq Sample 057

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500080_20160901


title: GOYA RNASeq Sample 051

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500071_20160827


title: GOYA RNASeq Sample 050

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500070_20160827


title: GOYA RNASeq Sample 049

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500069_20160916


title: GOYA RNASeq Sample 048

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500068_20160904


title: GOYA RNASeq Sample 075

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500100_20160926


title: GOYA RNASeq Sample 072

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500097_20160907


title: GOYA RNASeq Sample 069

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500094_20160904


title: GOYA RNASeq Sample 052

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500072_20160827


title: GOYA RNASeq Sample 047

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500067_20160828


title: GOYA RNASeq Sample 046

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500066_20160827


title: GOYA RNASeq Sample 066

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500090_20160906


title: GOYA RNASeq Sample 045

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500065_20160901


title: GOYA RNASeq Sample 064

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500088_20160827


title: GOYA RNASeq Sample 044

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500062_20160904


title: GOYA RNASeq Sample 043

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500060_20160904


title: GOYA RNASeq Sample 058

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500081_20160827


title: GOYA RNASeq Sample 062

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500085_20160827


title: GOYA RNASeq Sample 040

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500057_20160904


title: GOYA RNASeq Sample 041

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500058_20160827


title: GOYA RNASeq Sample 039

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500054_20160901


title: GOYA RNASeq Sample 038

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500053_20160901


title: GOYA RNASeq Sample 036

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500047_20160923


title: GOYA RNASeq Sample 033

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500043_20160827


title: GOYA RNASeq Sample 034

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500045_20160904


title: GOYA RNASeq Sample 032

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500042_20160901


title: GOYA RNASeq Sample 035

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500046_20160827


title: GOYA RNASeq Sample 031

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500039_20160904


title: GOYA RNASeq Sample 030

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500037_20160911


title: GOYA RNASeq Sample 029

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500036_20160827


title: GOYA RNASeq Sample 027

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500032_20160827


title: GOYA RNASeq Sample 024

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500029_20160827


title: GOYA RNASeq Sample 025

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500030_20160901


title: GOYA RNASeq Sample 026

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500031_20160827


title: GOYA RNASeq Sample 028

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500033_20160916


title: GOYA RNASeq Sample 019

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500024_20160827


title: GOYA RNASeq Sample 022

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500027_20160901


title: GOYA RNASeq Sample 021

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500026_20160901


title: GOYA RNASeq Sample 020

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500025_20160827


title: GOYA RNASeq Sample 018

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500023_20160827


title: GOYA RNASeq Sample 017

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500022_20160905


title: GOYA RNASeq Sample 016

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500021_20160827


title: GOYA RNASeq Sample 042

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500059_20160827


title: GOYA RNASeq Sample 037

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500051_20160901


title: GOYA RNASeq Sample 014

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500016_20160827


title: GOYA RNASeq Sample 015

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500017_20160827


title: GOYA RNASeq Sample 092

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500122_20160926


title: GOYA RNASeq Sample 012

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500014_20160904


title: GOYA RNASeq Sample 013

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500015_20160916


title: GOYA RNASeq Sample 009

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500009_20160904


title: GOYA RNASeq Sample 008

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500008_20160901


title: GOYA RNASeq Sample 006

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500006_20160827


title: GOYA RNASeq Sample 005

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500005_20160827


title: GOYA RNASeq Sample 003

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500003_20160904


title: GOYA RNASeq Sample 002

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500002_20160904


title: GOYA RNASeq Sample 004

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500004_20160827


title: GOYA RNASeq Sample 001

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500001_20160904


title: GOYA RNASeq Sample 060

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500083_20160905


title: MLP_CB_9

status: Public on Jan 19 2019

city: Toronto

first: Alexander

middle: James

last: Murison

state: Ontario

address: 101 College Street, TMDT room 11-706

country: Canada

institute: University Health Network

data_processing:
Data was aligned using STAR v2.5.2b using the 2 pass mode and specifiying the following parameters: --chimSegmentMin 12 --chimJunctionOverhangMin 12 --alignSJDBoverhangMin 10 --alignMatesGapMax 100000 --alignIntronMax 100000 --chimSegmentReadGapMax parameter 3 --alignSJstitchMismatchNmax 5 -1 5 5
Data was then quantifies using htseq-count version 0.7.2.
Data was normalized and variance stabilized as a cohort using DESeq2 v1.18.1.
Genome_build: GRCH38
Supplementary_files_format_and_content: tsv file containing counts per million values for each gene (row) in each population (column).
Supplementary_files_format_and_content: Excel file containing un-normalized count data for each of the populations in the study.

molecule: total RNA

source_name: Cord Blood

growth_protocol: Cells were sorted from fresh cord blood samples and processed without culturing

extract_protocol:
For each population 5K cells were sorted for RNA extraction. We used the Picopure kit from invitrogene to extract the RNA. Only samples with a RIN>8 were submitted for library preparation at TCAG, Sickkids.
For library construction SMART-Seq® v4 Ultra Low Input RNA Kit for Sequencing (Takara) and Ilumina Nextera XT DNA library preparation kit were used following manufacture's protocols
cDNA libraries were constructed from mRNA

tag: cell type

value: Multilymphoid Progenitors (MLP)

tag: tissue

value: Cord Blood

tag: cord blood pool


title: MLP_CB_8


title: GMP_CB_8

value: Granulocyte monocyte Progenitors (GMP)


title: ST_HSC_CB_9

value: Short-term hematopoietic stem cells (ST-HSC)


title: CMP_CB_7

value: Common myeloid progenitors (CMP)


title: GMP_CB_9


title: CMP_CB_9


title: CMP_CB_8


title: GMP_CB_7


title: ST_HSC_CB_7


title: ST_HSC_CB_8


title: LT_HSC_CB_7

value: Long-term hematopoietic stem cells (LT-HSC)


title: LT_HSC_CB_8


title: LT_HSC_CB_9


title: GOYA RNASeq Sample 011

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500012_20160827

value: Rituximab

value: High


title: 3_13

status: Public on Oct 04 2018

city: Moscow

first: Maria

middle: Vladimirovna

last: Suntsova

address: Miklukho-Maklaya, 16/10

department: Department of Genetics and Postgenomic Technologies

country: Russia

institute: M.M. Shemyakin and Yu.A. Ovchinnikov  Institute of  bioorganic chemistry of the Russian Academy of Sciences

data_processing:
Runing STAR aligner in "Gene_counts" mode
Merging STAR output ("ReadPerGene.out" files) with R into a single table
Genome_build: GRCh38
Supplementary_files_format_and_content: Raw gene counts for each sample

source_name: Pancreas

extract_protocol:
For solid tissue biosamples, RNA extraction was performed immediately before preparation of sequencing libraries using QIAGEN RNeasy Kit (Qiagen) for tissues in RNAlater and using the RecoverAll™ Total Nucleic Acid Isolation Kit for FFPE (Invitrogen) following the manufacturer ’s protocol. Then RNA Integrity Number (RIN) was measured using Agilent 2100 bio-Analyzer. Agilent RNA 6000 Nano or Qubit RNA Assay Kits were used to measure RNA concentration. The Kit for further depletion of ribosomal RNA was selected based on total amount of RNA in every sample: (i) when total amounts of RNA were less than 25 ng, Clontech Smarter stranded total RNA kit-pico (Mammalian only) was used; (ii) when total amount of RNA exceeded 25ng, KAPA RNA Hyper with RiboErase (KAPA Biosystem) kits were used.
For library preparations, we used Ovation® Universal RNA-Seq System 1-96 and KAPA HyperPrep Kit according to the manufacturer’s recommendations. Different adaptors were used for multiplexing samples in one sequencing run. Library concentrations and quality were measured using Qubit ds DNA HS Assay kit (Life Technologies) and Agilent Tapestation (Agilent). RNA sequencing was performed using Illumina HiSeq 3000 equipment for single-end sequencing, 50 bp read length, for approx. 30 million raw reads per each sample. Data quality check was done on Illumina SAV. De-multiplexing was performed with Illumina Bcl2fastq2 v 2.17 program.

value: Pancreas

tag: disease

value: healthy


title: GOYA RNASeq Sample 010

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500010_20160905

value: GCB

value: High-Intermediate

value: Male


title: 1_13


title: 2_13


title: GOYA RNASeq Sample 023

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500028_20160901

value: Female


title: GOYA RNASeq Sample 007

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500007_20160827

value: Low-Intermediate

value: Other


title: MLP_CB_7


title: Yki_gut_rep2

status: Public on Apr 27 2018

city: Boston

first: Wei

last: Song

email: rocwsong@gmail.com, songw@whu.edu.cn

state: Massachusetts

address: 77 Ave Louis Pasteur, NRB 336

department: Department of Genetics

institute: Harvard Medical School

data_processing:
Illumina HiSeq2000 at the Columbia Genome Center (http://systemsbiology.columbia.edu/genome-center)
We multiplexed samples in each lane, which yields targeted number of single-end 100 bp reads for each sample, as a fraction of 180 million reads for the whole lane.
We use RTA (Illumina) for base calling and bcl2fastq (version 1.8.4) for converting BCL to fastq format, coupled with adaptor trimming. We map the reads to a reference Drosophila genome (flybase genome annotation version r5.51) using Tophat (version 2.1.0) with 4 mismatches (--read-mismatches = 4) and 10 maximum multiple hits (--max-multihits = 10).
To tackle the mapping issue of reads that are from exon-exon junctions, Tophat infers novel exon-exon junctions ab initio, and combine them with junctions from known mRNA sequences (refgenes) as the reference annotation. We estimate the relative abundance (aka expression level) of genes and splice isoforms using cufflinks (version 2.0.2) with default settings.
We test for differentially expressed genes under various conditions using DEseq. It is an R package based on a negative binomial distribution that models the number reads from RNA-seq experiments and test for differential expression.
Assembly: Drosophila genome (flybase genome annotation version r5.51)
Supplementary files format and content: tab-delimited text file includes raw counts for each sample

organism: Drosophila melanogaster

source_name: Adult midgut

extract_protocol:
After assessing RNA quality with Agilent Bioanalyzer, mRNAs were enriched by poly-A pull-down from total RNA samples (200ng - 1ug per sample, RIN > 7 required).
Sequencing libraries were constructed with Illumina TruSeq RNA prep kit

value: Adult midgut

tag: genotype

value: 29 degree induction for 8 days


title: Con_gut_rep1

value: esg-Gal4, tub-Gal80ts, UAS-GFP/+


title: Con_gut_rep2


title: Right RGCs

status: Public on Jul 17 2018

city: Farmington

first: Ephraim

middle: F

last: Trakhtenberg

state: CT

address: 263 Farmington Ave. RM L4005

department: Neuroscience

institute: University of Connecticut School of Medicine

data_processing:
Base calling perofrmed on Illumina HiSeq 4000 with 150 cycle sequencing
FASTQs were generated using CellRanger v1.3 (bcl2fastq v2.17.1.14)
FASTQ files were then aligned to mm10 mouse reference genome and transcriptome using the CellRanger v1.3 software pipeline with default parameters
Cells containing < 3000 genes were excluded due to poor coverage
Gene expression was normalized using CellView software
Sex-specific genes were excluded from the clustering steps but were retained in the dataset for downstream analysis after clustering.
253 cells lacking RGC markers and containg other markers were excluded from the dataset
Cell clusters were determined using DBSCAN
Genome_build: mm10
Supplementary_files_format_and_content: Two CSV files: one containg all cells' normalized expression values for each gene, and one containing the cluster averages of normalized expression for each gene
Supplementary_files_format_and_content: For AllCells.csv, our processing pipeline did not produce genes that had zero expression across all of the cells.

organism: Mus musculus

source_name: Retinal Ganglion Cells

growth_protocol: RGCs were directly harvested from mouse retinas and acutely sequenced

extract_protocol:
Retinal suspensions were immunopanned for Thy1 to purify RGCs; cells from left and right eyes were captured and lysed on the 10x Chromium System with v2 reagent kit.
Left and right sample libraries were created using amplified cDNA from their respective Chromium channels
Drop-seq

value: Right Retinal Ganglion Cells


title: Left RGCs

value: Left Retinal Ganglion Cells


title: Yki_gut_rep1


title: Untreated vs 30min PTZ rep1

status: Public on Feb 24 2017

type: RNA

city: Sheffield

first: Vincent

middle: Trevor

last: Cunliffe

state: South Yorkshire

address: Western Bank

department: School of Biosciences

country: United Kingdom

institute: University of Sheffield

description: Biological replicate 1 of 2.

hyb_protocol: The Agilent protocol for Two-color Microarray-Based Gene Expression Analysis, Low Input Quick Amp Labeling was followed for sample preparation, hybridisation, microarray wash and scanning and feature extraction.

scan_protocol: Scanned on Agilent Technologies Scanner G2505C US83603551. Protocol name: GE2_1105_Oct12

data_processing:
Data was analysed using Excel.
Fluorescence signals were transformed to log base 2 to detect changes in gene expression levels. The values of the signals from the PTZ-treated samples values were subtracted from the values of the control samples to identify genes exhibiting fold-changes greater than 1.00.

organism: Danio rerio

source_name: 3dpf zebrafish larvae, 30min E3

growth_protocol: Zebrafish embryos were maintained in E3 media in plates containing 40 embryos per plate.

extract_protocol: Total RNA was extracted using Trizol (Invitrogen). The tissue was homogenised by pipetting continuously up and down. The RNA was purified using the RNAeasy minikit (QIAGEN)

treatment_protocol: At 3dpf, one group of 20 zebrafish larvae were transferred to fresh E3 for 30 minutes and 20 larvae were treated with 20mM PTZ for 30 minutes. Another group of 20 larvae were transferred to fresh E3 for 90 minutes and 20 more larvae were treated with 20mM PTZ for 90 minutes.

tag: strain

value: zebrafish AB wild type

tag: age

source_name: 3dpf zebrafish larvae, 30min  20mM PTZ


title: Dusp1(-/-) x Zfp36aa/aa derived Macrophage replicate 1 LPS Stimulated 4 hour

status: Public on May 15 2015

city: Birmingham

first: John

middle: Daniel

last: O'Neil

address: Queen Elizabeth Hospital

department: Immunity and Infection

institute: University of Birmingham

description: Gene expression of Dusp1 knockout: Zfp3aa/aa Macrophage stimulated with LPS for 4 hours. Replicate 1

hyb_protocol: hybridized onto SurePrint G3 Mouse GE 8x60K slides

scan_protocol: Scanned using a G2505C scanner (Agilent Technologies).

data_processing: Agilent Feature Extraction Software (10.7.3.1) using default parameters using the Cy3 colour only

source_name: Bone Marrow M-CSF dervied Macrophage

label_protocol: Total RNA was converted to labelled cRNA with Cy3 or Cy5 respectively using the Low Input Quick Amp Labeling Kit, Two-Color (Agilent Technologies).

growth_protocol: Bone Marrow differentiated using 100ng/mL M-CSF for 5 days

extract_protocol: Total RNA was isolated using QIAGEN RNA isolation kit and ZYMO RNA concentrator kit following manufacturer's instructions

treatment_protocol: Cells were either left untreated or stimulated with 10ng/ml LPS for 1-4 hours, or 10ng/ml LPS plus 100nM dexamethasone for 4 hours, prior to RNA isolation.

tag: genotype/variation

value: Dusp1(-/-) x Zfp36aa/aa derived macrophage

tag: treatment

value: stimulated with LPS for 4 hours

tag: replicate


title: Zfp36aa/aa derived Macrophage replicate 1 LPS Stimulated 4 hour

description: Gene expression of Zfp36 mutant (aa/aa) Macrophage stimulated with LPS for 4 hours. Replicate 1

value: Zfp36 mutant (aa/aa) macrophage


title: 90min PTZ vs Untreated dye-swap 1

description: Technical replicate 1 of 2.

source_name: 3dpf zebrafish larvae, 90min 20mM PTZ

label_protocol: The Agilent protocol for Two-color Microarray-Based Gene Expression Analysis, Low Input Quick Amp Labeling was followed for sample preparation, hybridisation, microarray wash and scanning and feature extraction.

source_name: 3dpf zebrafish larvae, 90min E3


title: Wild Type derived Macrophage replicate 3 LPS Stimulated 4 hour

description: Gene expression of Wild type Macrophage stimulated with LPS for 4 hours. Replicate 3

value: wild type derived macrophage


title: Untreated vs 90min PTZ rep1

description: Biological replicate 1 of 2.

source_name: 3dpf zebrafish larvae, 90min  20mM PTZ


title: Untreated vs 90min PTZ rep2

description: Biological replicate 2 of 2.


title: 30min PTZ vs Untreated dye-swap 2

description: Technical replicate 2 of 2.

source_name: 3dpf zebrafish larvae, 30min 20mM PTZ


title: Dusp1(-/-) derived Macrophage replicate 2 LPS Stimulated 4 hour

description: Gene expression of Dusp1 knockout Macrophage stimulated with LPS for 4 hours. Replicate 2

value: Dusp1(-/-) derived macrophage


title: Untreated vs 30min PTZ rep2

description: Biological replicate 2 of 2.


title: Dusp1(-/-) derived Macrophage replicate 1 LPS Stimulated 1 hour

description: Gene expression of Dusp1 knockout Macrophage stimulated with LPS for 1 hour. Replicate 1

value: stimulated with LPS for 1 hour


title: Dusp1(-/-) x Zfp36aa/aa derived Macrophage replicate 3 LPS Stimulated 4 hour

description: Gene expression of Dusp1 knockout: Zfp3aa/aa Macrophage stimulated with LPS for 4 hours. Replicate 3


title: Zfp36aa/aa derived Macrophage replicate 2 LPS Stimulated 4 hour

description: Gene expression of Zfp36 mutant (aa/aa) Macrophage stimulated with LPS for 4 hours. Replicate 2


title: Dusp1(-/-) derived Macrophage replicate 1 LPS Stimulated 4 hour

description: Gene expression of Dusp1 knockout Macrophage stimulated with LPS for 4 hours. Replicate 1


title: Dusp1(-/-) x Zfp36aa/aa derived Macrophage replicate 3 LPS Stimulated 1 hour

description: Gene expression of Dusp1 knockout: Zfp3aa/aa Macrophage stimulated with LPS for 1 hour. Replicate 3


title: Dusp1(-/-) derived Macrophage replicate 3 LPS Stimulated 4 hour

description: Gene expression of Dusp1 knockout Macrophage stimulated with LPS for 4 hours. Replicate 3


title: 90min PTZ vs Untreated dye-swap 2

description: Technical replicate 2 of 2.


title: Wild Type derived Macrophage replicate 1 LPS Stimulated 4 hour

description: Gene expression of Wild type Macrophage stimulated with LPS for 4 hours. Replicate 1


title: 30min PTZ vs Untreated dye-swap 1

description: Technical replicate 1 of 2.


title: Wild Type derived Macrophage replicate 2 LPS Stimulated 4 hour

description: Gene expression of Wild type Macrophage stimulated with LPS for 4 hours. Replicate 2


title: Zfp36aa/aa derived Macrophage replicate 3 LPS Stimulated 4 hour

description: Gene expression of Zfp36 mutant (aa/aa) Macrophage stimulated with LPS for 4 hours. Replicate 3


title: Dusp1(-/-) x Zfp36aa/aa derived Macrophage replicate 2 LPS Stimulated 1 hour

description: Gene expression of Dusp1 knockout: Zfp3aa/aa Macrophage stimulated with LPS for 1 hour. Replicate 2


title: Dusp1(-/-) x Zfp36aa/aa derived Macrophage replicate 2 LPS Stimulated 4 hour

description: Gene expression of Dusp1 knockout: Zfp3aa/aa Macrophage stimulated with LPS for 4 hours. Replicate 2


title: Dusp1(-/-) x Zfp36aa/aa derived Macrophage replicate 1 LPS Stimulated 1 hour

description: Gene expression of Dusp1 knockout: Zfp3aa/aa Macrophage stimulated with LPS for 1 hour. Replicate 1


title: GOYA RNASeq Sample 065

description: bo21005_ngs_rna_wts_rnaaccess_bo2100500089_20160904

tag: chemotherapy cycles

tag: cell of origin

value: ABC

tag: ipi

value: Eastern Europe


title: Zfp36aa/aa derived Macrophage replicate 3 LPS Stimulated 1 hour

description: Gene expression of Zfp36 mutant (aa/aa) Macrophage stimulated with LPS for 1 hour. Replicate 3


title: Dusp1(-/-) derived Macrophage replicate 3 LPS Stimulated 1 hour

description: Gene expression of Dusp1 knockout Macrophage stimulated with LPS for 1 hour. Replicate 3


title: Wild Type derived Macrophage replicate 3 LPS Stimulated 1 hour

description: Gene expression of Wild type Macrophage stimulated with LPS for 1 hour. Replicate 3


title: Dusp1(-/-) derived Macrophage replicate 2 LPS Stimulated 1 hour

description: Gene expression of Dusp1 knockout Macrophage stimulated with LPS for 1 hour. Replicate 2


title: Zfp36aa/aa derived Macrophage replicate 2 LPS Stimulated 1 hour

description: Gene expression of Zfp36 mutant (aa/aa) Macrophage stimulated with LPS for 1 hour. Replicate 2


title: Zfp36aa/aa derived Macrophage replicate 3 Unstimulated

description: Basal gene expression of Zfp36 mutant (aa/aa) Macrophage. Replicate 3

value: unstimulated


title: Dusp1(-/-) x Zfp36aa/aa derived Macrophage replicate 1 Unstimulated

description: Basal gene expression of Dusp1 knockout: Zfp3aa/aa Macrophage. Replicate 1


title: Dusp1(-/-) x Zfp36aa/aa derived Macrophage replicate 3 Unstimulated

description: Basal gene expression of Dusp1 knockout: Zfp3aa/aa Macrophage. Replicate 3


title: Wild Type derived Macrophage replicate 1 LPS Stimulated 1 hour

description: Gene expression of Wild type Macrophage stimulated with LPS for 1 hour. Replicate 1


title: Dusp1(-/-) x Zfp36aa/aa derived Macrophage replicate 2 Unstimulated

description: Basal gene expression of Dusp1 knockout: Zfp3aa/aa Macrophage. Replicate 2


title: Wild Type derived Macrophage replicate 2 Unstimulated

description: Basal gene expression of Wild type Macrophage. Replicate 2


title: Dusp1(-/-) derived Macrophage replicate 3 Unstimulated

description: Basal gene expression of Dusp1 knockout Macrophage. Replicate 3


title: Dusp1(-/-) derived Macrophage replicate 2 Unstimulated

description: Basal gene expression of Dusp1 knockout Macrophage. Replicate 2


title: Zfp36aa/aa derived Macrophage replicate 1 LPS Stimulated 1 hour

description: Gene expression of Zfp36 mutant (aa/aa) Macrophage stimulated with LPS for 1 hour. Replicate 1


title: Dusp1(-/-) derived Macrophage replicate 1 Unstimulated

description: Basal gene expression of Dusp1 knockout Macrophage. Replicate 1


title: Zfp36aa/aa derived Macrophage replicate 2 Unstimulated

description: Basal gene expression of Zfp36 mutant (aa/aa) Macrophage. Replicate 2


title: Zfp36aa/aa derived Macrophage replicate 1 Unstimulated

description: Basal gene expression of Zfp36 mutant (aa/aa) Macrophage. Replicate 1


title: Tumor sample from Y2076 patient

status: Public on Mar 14 2014

city: L'Hospitalet de Llobregat

first: Victor

last: Moreno

state: Barcelona

address: Granvia 199

department: Oncology Data Analytics Program

country: Spain

institute: Catalan Institute of Oncology

hyb_protocol: RNA hybridization was performed through the Affymetrix Human Genome U219 microarrays, using the 96-array plate format on the GeneTitan system and following the manufacturer's recommendations (Affymetrix, Santa Clara, USA). A blocked experimental design was implemented to avoid biases.

scan_protocol: Human Genome U219 array plates were scanned according to manufacturer's recommendations (Affymetrix, Santa Clara, USA).

data_processing: The Robust Multi-array Average (RMA) algorithm was used for data normalization through R and Bioconductor.

label: biotin

source_name: Primary colon adenocarcinoma cells

label_protocol: RNA was labeled with the 3'-IVT Labeling Kit (Affymetrix, Santa Clara, USA) following the manufacturer's protocols.

extract_protocol: RNA was extracted from tissue samples using a miRCURY™ RNA Isolation Kit (Exiqon) according to manufacturer’s protocol, quantified by NanoDrop® ND-1000 Spectrophotometer (Nanodrop technologies, Wilmington, DE) and stored at -80°C. The quality of these RNA samples was further checked using RNA 600 Nano chip (Agilent Bioanalyzer) and was confirmed by gel electrophoresis.

tag: sample type

value: Tumor

tag: individual id

tag: Stage

value: IIA

tag: location

value: Right

tag: gender

value: Male


title: Tumor sample from Z2038 patient

value: Female


title: Tumor sample from Y2099 patient


title: Wild Type derived Macrophage replicate 3 Unstimulated

description: Basal gene expression of Wild type Macrophage. Replicate 3


title: Tumor sample from Z2061 patient

value: Left


title: Wild Type derived Macrophage replicate 2 LPS Stimulated 1 hour

description: Gene expression of Wild type Macrophage stimulated with LPS for 1 hour. Replicate 2


title: Tumor sample from Z2084 patient


title: Wild Type derived Macrophage replicate 1 Unstimulated

description: Basal gene expression of Wild type Macrophage. Replicate 1


title: LNCaP Rep2

status: Public on Sep 12 2016

type: genomic

city: Darlinghurst

first: Ruth

last: Pidsley

state: NSW

address: 384 Victoria Street

country: Australia

institute: Garvan Institute of Medical Research

description: transformed prostate cancer cell line

hyb_protocol: Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol

scan_protocol: Standard Illumina Protocol

data_processing: Raw IDAT files were processed with Illumina’s GenomeStudio software V2011.1 and background normalized using negative control probes to generate methylation β-values which were used for all downstream analyses.

label: Cy5 and Cy3

molecule: genomic DNA

source_name: LNCaP cells

label_protocol: Standard Illumina Protocol

growth_protocol: LNCaP prostate cancer cells were cultured as described in PMID 11850822. Normal prostate epithelial cells (PrEC) were cultured according to the manufacturer’s instructions in prostate epithelial growth medium (PrEGM, catalogue no. CC-3166; Cambrex Bio Science) as described in PMID 20173741. Patient-matched cancer associated fibroblasts (CAFs) and non-malignant tissue associated fibroblasts (NAFs) (n=3 pairs) were isolated and validated as described in PMID 23558784

extract_protocol: Genomic DNA for LNCaP and PrEC cell lines was extracted using QIAamp DNA Mini and Blood Mini kit following the manufacturer’s protocol for cultured cells (Qiagen). Genomic DNA was extracted from the CAF and NAF samples using the DNeasy kit (Qiagen) with on-column RNase A digestion. Genomic DNA was extracted from the Guthrie cards using GenSolve technology (IntegenX) followed by purification using the QIAamp DNA micro kit (Qiagen) and an additional ethanol precipitation step.

tag: tissue

value: prostate cancer cell line (LNCaP)


title: Tumor sample from X2011 patient


title: Tumor sample from Y2030 patient


title: Tumor sample from W2072 patient


title: PrEC Rep2

description: primary cell culture of prostate epithelial cells

source_name: PrEC cells

value: primary prostate epithelial cells (PrEC)


title: Tumor sample from V2064 patient


title: Tumor sample from Y2007 patient


title: Tumor sample from V2087 patient


title: Tumor sample from Z2015 patient


title: Tumor sample from X2034 patient


title: Tumor sample from X2057 patient


title: Tumor sample from X2080 patient


title: Tumor sample from W2049 patient


title: Tumor sample from W2003 patient


title: Tumor sample from V2018 patient


title: Tumor sample from V2041 patient


title: Tumor sample from W2095 patient


title: Tumor sample from R2048 patient


title: Tumor sample from T2070 patient


title: Tumor sample from R2025 patient


title: Tumor sample from T2047 patient


title: Tumor sample from W2026 patient


title: Tumor sample from T2093 patient

value: IIB


title: Tumor sample from T2001 patient


title: Tumor sample from T2024 patient


title: Tumor sample from S2039 patient


title: Tumor sample from S2062 patient


title: Tumor sample from R2071 patient


title: Tumor sample from R2002 patient


title: Tumor sample from S2016 patient


title: Tumor sample from Q2017 patient


title: Tumor sample from Q2086 patient


title: Tumor sample from R2094 patient


title: Tumor sample from Q2063 patient


title: Tumor sample from P2078 patient


title: Tumor sample from Q2040 patient


title: Tumor sample from N2036 patient


title: Tumor sample from N2059 patient


title: Tumor sample from P2055 patient


title: Tumor sample from P2032 patient


title: Tumor sample from M2098 patient


title: Tumor sample from N2013 patient


title: Tumor sample from M2075 patient


title: Tumor sample from N2082 patient


title: Tumor sample from M2052 patient


title: Tumor sample from M2006 patient


title: Tumor sample from L2066 patient


title: Tumor sample from M2029 patient


title: Tumor sample from K2091 patient


title: Tumor sample from K2068 patient


title: Tumor sample from L2020 patient


title: Tumor sample from L2089 patient


title: Tumor sample from J2060 patient


title: Tumor sample from K2045 patient


title: Tumor sample from J2014 patient


title: Tumor sample from H2065 patient


title: Tumor sample from L2043 patient


title: Tumor sample from K2022 patient


title: Tumor sample from P2009 patient


title: Tumor sample from G2005 patient


title: Tumor sample from G2051 patient


title: Tumor sample from J2037 patient


title: Tumor sample from G2097 patient


title: Tumor sample from H2019 patient


title: Tumor sample from F2100 patient


title: Tumor sample from G2074 patient


title: Tumor sample from J2083 patient


title: Tumor sample from F2031 patient


title: Tumor sample from H2088 patient


title: Tumor sample from D2033 patient


title: Tumor sample from C2067 patient


title: Tumor sample from F2008 patient


title: Tumor sample from Y2053 patient


title: Tumor sample from F2077 patient


title: Tumor sample from H2042 patient


title: Tumor sample from F2054 patient


title: Tumor sample from D2056 patient


title: Tumor sample from E2092 patient


title: Tumor sample from E2023 patient


title: Tumor sample from D2079 patient


title: Tumor sample from E2069 patient


title: Tumor sample from C2044 patient


title: Tumor sample from D2010 patient


title: Tumor sample from B2058 patient


title: Tumor sample from G2028 patient


title: Tumor sample from C2090 patient


title: Tumor sample from E2046 patient


title: Tumor sample from B2081 patient


title: Tumor sample from B2035 patient


title: Tumor sample from C2021 patient


title: Tumor sample from B2012 patient


title: Normal paired sample from Z2061 patient

source_name: Normal distant colon mucosa cells

value: Normal


title: Tumor sample from A2096 patient


title: Tumor sample from A2050 patient


title: Normal paired sample from Z2084 patient


title: Normal paired sample from Z2015 patient


title: Normal paired sample from Z2038 patient


title: Normal paired sample from W2072 patient


title: Tumor sample from A2027 patient


title: Normal paired sample from Y2007 patient


title: Normal paired sample from Y2076 patient


title: Normal paired sample from X2034 patient


title: Normal paired sample from X2080 patient


title: Normal paired sample from Y2053 patient


title: Normal paired sample from W2049 patient


title: Normal paired sample from X2011 patient


title: Normal paired sample from V2018 patient


title: Normal paired sample from V2087 patient


title: Normal paired sample from V2041 patient


title: Normal paired sample from Y2099 patient


title: Normal paired sample from S2062 patient


title: Normal paired sample from T2070 patient


title: Normal paired sample from Y2030 patient


title: Normal paired sample from X2057 patient


title: Normal paired sample from W2095 patient


title: Normal paired sample from S2016 patient


title: Normal paired sample from V2064 patient


title: Normal paired sample from R2094 patient


title: Normal paired sample from W2003 patient


title: Normal paired sample from T2047 patient


title: Normal paired sample from W2026 patient


title: Normal paired sample from T2001 patient


title: Normal paired sample from T2093 patient


title: Normal paired sample from T2024 patient


title: Normal paired sample from S2039 patient


title: Normal paired sample from R2048 patient


title: Normal paired sample from R2071 patient


title: Normal paired sample from Q2040 patient


title: Normal paired sample from R2002 patient


title: Normal paired sample from P2009 patient


title: Normal paired sample from N2082 patient


title: Normal paired sample from R2025 patient


title: Normal paired sample from P2078 patient


title: Normal paired sample from Q2017 patient


title: Normal paired sample from Q2086 patient


title: Normal paired sample from P2032 patient


title: Tumor sample from A2004 patient


title: Normal paired sample from M2075 patient


title: Normal paired sample from M2052 patient


title: Normal paired sample from N2013 patient


title: Normal paired sample from Q2063 patient


title: Normal paired sample from N2059 patient


title: Normal paired sample from M2098 patient


title: Normal paired sample from M2029 patient


title: Normal paired sample from L2066 patient


title: Normal paired sample from L2020 patient


title: Normal paired sample from M2006 patient


title: Normal paired sample from N2036 patient


title: Normal paired sample from K2068 patient


title: Normal paired sample from K2045 patient


title: Normal paired sample from P2055 patient


title: Normal paired sample from L2089 patient


title: Normal paired sample from K2091 patient


title: Normal paired sample from K2022 patient


title: Normal paired sample from J2014 patient


title: Normal paired sample from J2037 patient


title: Normal paired sample from H2042 patient


title: Normal paired sample from J2083 patient


title: Normal paired sample from G2051 patient


title: Normal paired sample from H2088 patient


title: Normal paired sample from G2097 patient


title: Normal paired sample from H2065 patient


title: Normal paired sample from F2077 patient


title: Normal paired sample from L2043 patient


title: Normal paired sample from F2054 patient


title: Normal paired sample from H2019 patient


title: Normal paired sample from G2028 patient


title: Normal paired sample from E2046 patient


title: Normal paired sample from D2056 patient


title: Normal paired sample from F2031 patient


title: Normal paired sample from E2069 patient


title: Normal paired sample from D2079 patient


title: Normal paired sample from F2008 patient


title: Normal paired sample from F2100 patient


title: Normal paired sample from C2021 patient


title: Normal paired sample from G2074 patient


title: Normal paired sample from A2096 patient


title: Normal paired sample from J2060 patient


title: Normal paired sample from B2058 patient


title: Normal paired sample from C2067 patient


title: Normal paired sample from A2004 patient


title: Normal paired sample from E2092 patient


title: Normal paired sample from C2090 patient


title: Normal paired sample from E2023 patient


title: Normal paired sample from D2033 patient


title: Normal paired sample from A2050 patient


title: Normal paired sample from B2035 patient


title: Normal paired sample from G2005 patient


title: Normal paired sample from D2010 patient


title: Normal paired sample from C2044 patient


title: Normal paired sample from A2027 patient


title: Mucosa sample from Z2130 healthy donnor

source_name: Healthy colon mucosa cells

value: Mucosa


title: Mucosa sample from Z2107 healthy donnor


title: Normal paired sample from B2081 patient


title: Mucosa sample from X2149 healthy donnor


title: Mucosa sample from W2141 healthy donnor


title: Mucosa sample from Y2122 healthy donnor


title: Mucosa sample from X2103 healthy donnor


title: Mucosa sample from T2116 healthy donnor


title: Mucosa sample from V2133 healthy donnor


title: Mucosa sample from X2126 healthy donnor


title: Normal paired sample from B2012 patient


title: Mucosa sample from P2124 healthy donnor


title: Mucosa sample from S2131 healthy donnor


title: Mucosa sample from V2110 healthy donnor


title: Mucosa sample from M2121 healthy donnor


title: Mucosa sample from W2118 healthy donnor


title: Mucosa sample from R2140 healthy donnor


title: Mucosa sample from S2108 healthy donnor


title: Mucosa sample from N2128 healthy donnor


title: Mucosa sample from P2147 healthy donnor


title: Mucosa sample from R2117 healthy donnor


title: Mucosa sample from L2112 healthy donnor


title: Mucosa sample from Q2132 healthy donnor


title: Mucosa sample from Q2109 healthy donnor


title: Mucosa sample from P2101 healthy donnor


title: Mucosa sample from K2114 healthy donnor


title: Mucosa sample from M2144 healthy donnor


title: Mucosa sample from N2105 healthy donnor


title: Mucosa sample from L2135 healthy donnor


title: Mucosa sample from K2137 healthy donnor


title: Mucosa sample from Y2145 healthy donnor


title: Mucosa sample from H2111 healthy donnor


title: Mucosa sample from T2139 healthy donnor


title: Mucosa sample from J2106 healthy donnor


title: Mucosa sample from H2134 healthy donnor


title: Mucosa sample from G2143 healthy donnor


title: Mucosa sample from E2138 healthy donnor


title: Mucosa sample from F2123 healthy donnor


title: Mucosa sample from D2125 healthy donnor


title: HT29 at 0 μM of 5-Aza, biological rep2

status: Public on Sep 17 2013

city: Stony Brook

first: Xiao

last: Xu

state: NY

address: Stony Brook University

institute: Stony Brook University BME

description: RNA samples from human colon cancer HT29 cell line

data_processing:
Illumina Casava1.8 software used for basecalling.
Sequenced reads were trimmed for adaptor sequence and low quality bases (first 3 bases), then mapped to hg19 whole genome using tophatv 2.0.1 with parameters -r 10 -p 4
mapped reads from tophat were further quantifiled through Cufflink program (version 1.3.0)
Fragments Per Kilobase of exon model per Million mapped fragments (FPKM) were calculated to represent gene expression intensities
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each Sample.

source_name: HT29 treated with 0 μM of 5-Aza

growth_protocol: HT-29 colon cancer cells were cultured as monolayers in 150 mm dishes in DMEM with 10% fetal bovine serum, 1% kanamycin, streptomycin-penicillin  at 37 CO2 5% .

extract_protocol:
Each monolayer was washed with PBS, scraped and centrifuged into a pellet.  RNA was extracted from each pellet using Tri-Reagent according to the manufacturer's protocol.
Paired end 100 bp RNA-Seq libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: Triplicate cultures of HT-29 cells were treated in the following three experimental groups: 1.) Vehicle (DMSO) alone or 0 µM 5-Aza-deoxycytidine (5-Aza); 2.) 5 µM 5-Aza; 3.) 10 µM 5-Aza

tag: cell line

tag: cell type

value: colon cancer

value: control


title: HT29 at 0 μM of 5-Aza, biological rep1


title: HT29 at 5 μM of 5-Aza, biological rep2

source_name: HT29 treated with 5 μM of 5-Aza

value: 5-Aza low


title: HT29 at 10 μM of 5-Aza, biological rep3

source_name: HT29 treated with 10 μM of 5-Aza

value: 5-Aza high


title: HT29 at 5 μM of 5-Aza, biological rep1


title: HT29 at 10 μM of 5-Aza, biological rep2


title: HT29 at 10 μM of 5-Aza, biological rep1


title: HT29 at 5 μM of 5-Aza, biological rep3


title: Mucosa sample from B2104 healthy donnor


title: Mucosa sample from D2148 healthy donnor


title: Mucosa sample from C2113 healthy donnor


title: Mucosa sample from C2136 healthy donnor


title: Mucosa sample from B2127 healthy donnor


title: HT29 at 0 μM of 5-Aza, biological rep3


title: Mucosa sample from F2146 healthy donnor


title: Mucosa sample from E2115 healthy donnor


title: Mucosa sample from J2129 healthy donnor


title: Mucosa sample from G2120 healthy donnor


title: Mucosa sample from A2119 healthy donnor


title: Mucosa sample from D2102 healthy donnor


title: Mucosa sample from B2150 healthy donnor


title: Mucosa sample from A2142 healthy donnor


title: Tumor_fresh-frozen_RS_429

status: Public on Oct 10 2008

city: Los Angeles

first: Stanley

last: Nelson

address: 695 Charles E. Young Drive South, Bldg Gonda, Rm 5554

department: Human Genetics

description: Primary GBM

hyb_protocol: Hybridization and Poly-A controls all revealed trends within expected parameters and 3'/5' ratios for Actin & GAPDH well below 3 (mean Beta Actin 3'/5' = 1.53 & mean GAPDH 3'/5' = 1.02).

scan_protocol: GCOS v1.4 Expression Reports also revealed expected Call percentages (Present: 48% to 62%; Absent: 36% to 49%; Marginal: 1.5% to 1.9%).  All arrays were within 1.5 fold of each other in overall intensity, and array images were visually inspected for surface defects.

data_processing: The data were analyzed with RMA with default settings from the Bioconductor R Library.

source_name: Microarray prepared at U.C.L.A., PMID: 12894235

label_protocol: Labeled one round cRNA was generated using kits (GeneChip One-Cycle Target Labeling and Control Reagent) from Affymetrix.  cRNA was quantified and 15 micrograms were hybridized to U133A and U133 Plus 2.0 arrays at the UCLA DNA Microarray Facility (http://microarray.genetics.ucla.edu/) using standard protocols recommended by the manufacturer.  Briefly, all RNA samples were isolated as previously described and analyzed for concentration by Nanodrop (NanoDrop Technologies, Wilmington, DE) and total RNA integrity with Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA) [11].  Samples displayed 28s/18s ratios over 1.5 with no evidence of degradation.  Quality Control workflow steps via GCOS v1.4 (Affymetrix, Santa Clara, Ca) were performed on the targets produced and the hybridizations that were applied.

growth_protocol: No growth protocols were employed as the tissues were resected tumors from clinically received patients.

extract_protocol: Total RNA was purified from fresh frozen tumour biopsies and visually inspected for tumour content using Qiagen RNAeasy columns and standard manufacturerÆs protocols.  Labelled one round cRNA was generated using kits (GeneChip One-Cycle Target Labelling and Control Reagent) from Affymetrix.  cRNA was quantified and 15 micrograms were hybridized to U133A and U133 Plus 2.0 arrays at the UCLA DNA Microarray Facility using standard protocols recommended by the manufacturer.

treatment_protocol: Tissues were flash frozen in liquid nitrogen immediately after surgical resection.  Tissues were homogenized by rotorstator prior to execution of the extraction protocol.

tag: set

tag: tts(days)

tag: vital status

value: DECEASED

tag: age(years)

tag: hc

value: ProMes

tag: hc coded

value: non-PN

value: M

tag: chemotx administered prior to tumor resection

tag: radiation administered prior to tumor resection

tag: temodar administered prior to tumor resection


title: Tumor_fresh-frozen_RS_65

description: Primary GBM


title: Tumor_fresh-frozen_RS_85

description: Primary GBM


title: Tumor_fresh-frozen_RS_268

description: Primary GBM

value: Mes


title: Tumor_fresh-frozen_RS_46

description: Primary GBM

value: F


title: Tumor_fresh-frozen_RS_263

description: Primary GBM


title: Tumor_fresh-frozen_RS_502

description: Primary GBM


title: Tumor_fresh-frozen_RS_476

description: Primary GBM


title: Tumor_fresh-frozen_RS_202

description: Primary GBM


title: Tumor_fresh-frozen_RS_110

description: Primary GBM


title: Tumor_fresh-frozen_RS_188

description: Primary GBM


title: Tumor_fresh-frozen_RS_176

description: Primary GBM

value: PN


title: Tumor_fresh-frozen_RS_80

description: Primary GBM

value: Pro


title: Tumor_fresh-frozen_RS_16

description: Primary GBM


title: Tumor_fresh-frozen_RS_416

description: Primary GBM


title: Tumor_fresh-frozen_RS_10

description: Primary GBM


title: Tumor_fresh-frozen_RS_367

description: Primary GBM


title: Tumor_fresh-frozen_RS_432

description: Primary GBM


title: Tumor_fresh-frozen_PM_68

description: Primary GBM

source_name: Microarray prepared at U.C.L.A., PMID: 12700671


title: Tumor_fresh-frozen_Brain_CG_1

description: Primary GBM

source_name: Microarray prepared at MGH, PMID: 12670911


title: Tumor_fresh-frozen_Brain_NG_8

description: Primary GBM


title: Tumor_fresh-frozen_Brain_NG_4

description: Primary GBM


title: Tumor_fresh-frozen_RS_203

description: Primary GBM


title: Tumor_fresh-frozen_Brain_NG_12

description: Primary GBM


title: Tumor_fresh-frozen_Brain_NG_3

description: Primary GBM


title: Tumor_fresh-frozen_PM_125

description: Primary GBM


title: Tumor_fresh-frozen_Brain_NG_10

description: Primary GBM


title: Tumor_fresh-frozen_Brain_CG_3

description: Primary GBM


title: Tumor_fresh-frozen_Brain_NG_5

description: Primary GBM


title: Tumor_fresh-frozen_Brain_NG_7

description: Primary GBM

value: ALIVE


title: Tumor_fresh-frozen_Brain_CG_14

description: Primary GBM


title: Tumor_fresh-frozen_Brain_NG_6

description: Primary GBM


title: Tumor_fresh-frozen_Brain_CG_2

description: Primary GBM


title: Tumor_fresh-frozen_Brain_CG_11

description: Primary GBM


title: Tumor_fresh-frozen_Brain_CG_4

description: Primary GBM


title: Tumor_fresh-frozen_Brain_CG_5

description: Primary GBM


title: Tumor_fresh-frozen_Brain_CG_12

description: Primary GBM


title: Tumor_fresh-frozen_Brain_NG_11

description: Primary GBM


title: Tumor_fresh-frozen_Brain_CG_8

description: Primary GBM


title: Tumor_fresh-frozen_Brain_NG_2

description: Primary GBM


title: Tumor_fresh-frozen_Brain_NG_14

description: Primary GBM


title: Tumor_fresh-frozen_Brain_NG_13

description: Primary GBM


title: Tumor_fresh-frozen_Brain_CG_9

description: Primary GBM


title: Tumor_fresh-frozen_Brain_CG_6

description: Primary GBM


title: Tumor_fresh-frozen_Brain_CG_7

description: Primary GBM


title: Tumor_fresh-frozen_Brain_CG_13

description: Primary GBM


title: Tumor_fresh-frozen_Brain_NG_9

description: Primary GBM


title: Tumor_fresh-frozen_Brain_CG_10

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00EJ

description: Primary GBM

source_name: Microarray prepared at U.C.L.A.


title: Tumor_fresh-frozen_GBM_00IN

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00IW

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00TIR

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_00MW

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00MN

description: Primary GBM


title: Tumor_fresh-frozen_Brain_NG_1

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00LO

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00IM

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00KE

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00EX

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00IA

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00DT

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00BR

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00MF

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00FM

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00EM

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00DJR

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_00XP

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00JS

description: Primary GBM


title: Tumor_fresh-frozen_TB_1297

description: Primary GBM

source_name: Microarray prepared at Duke University, PMID:15899794


title: Tumor_fresh-frozen_GBM_00AX

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00LK

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00KY

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00BP

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00KN

description: Primary GBM


title: Tumor_fresh-frozen_TB_966

description: Primary GBM


title: Tumor_fresh-frozen_TB_70

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00PA

description: Primary GBM


title: Tumor_fresh-frozen_GBM_0092987

description: Primary GBM


title: Tumor_fresh-frozen_TB_1406

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00BU

description: Primary GBM


title: Tumor_fresh-frozen_TB_956

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00ICR

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_00MO

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00ME

description: Primary GBM


title: Tumor_fresh-frozen_GBM_00QP

description: Primary GBM


title: Tumor_fresh-frozen_TB_1091

description: Primary GBM


title: Tumor_fresh-frozen_TB_1005

description: Primary GBM


title: Tumor_fresh-frozen_TB_987

description: Primary GBM


title: Tumor_fresh-frozen_TB_1079

description: Primary GBM


title: Tumor_fresh-frozen_TB_943

description: Primary GBM


title: Tumor_fresh-frozen_TB_1288

description: Primary GBM


title: Tumor_fresh-frozen_TB_883

description: Primary GBM


title: Tumor_fresh-frozen_TB_192

description: Primary GBM


title: Tumor_fresh-frozen_TB_115

description: Primary GBM


title: Tumor_fresh-frozen_TB_906

description: Primary GBM


title: Tumor_fresh-frozen_TB_711

description: Primary GBM


title: Tumor_fresh-frozen_TB_564

description: Primary GBM


title: Tumor_fresh-frozen_TB_1166

description: Primary GBM


title: Tumor_fresh-frozen_TB_1170

description: Primary GBM


title: Tumor_fresh-frozen_TB_1271

description: Primary GBM


title: Tumor_fresh-frozen_TB_156

description: Primary GBM


title: Tumor_fresh-frozen_TB_686

description: Primary GBM


title: Tumor_fresh-frozen_TB_959

description: Primary GBM


title: Tumor_fresh-frozen_TB_1015

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_4102

description: Primary GBM

source_name: Microarray prepared at U.C.S.F., PMID:16530701

tag: geo series

tag: geo accession


title: Tumor_fresh-frozen_TB_1129

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3778

description: Primary GBM


title: Tumor_fresh-frozen_TB_999

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_4122

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3839

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3781

description: Primary GBM


title: Tumor_fresh-frozen_TB_383

description: Primary GBM


title: Tumor_fresh-frozen_TB_69

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3910

description: Primary GBM


title: Tumor_fresh-frozen_TB_1522

description: Primary GBM


title: Tumor_fresh-frozen_TB_1143

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3899

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3895

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3779

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3903

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3775

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3759

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3756

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3776

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3745

description: Primary GBM


title: Tumor_fresh-frozen_TB_917

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_4125

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_4128

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3906

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3746

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3757

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3834

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3826

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_4094

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_4127

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3900

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3825

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_4097

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3836

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3748

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3827

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3907

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3830

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3754

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3897

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_4782

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3832

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3758

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_4785

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3901

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_4753

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3753

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3782

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_4129

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_4747

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3749

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3744

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_4788

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_4126

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3774

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3747

description: Primary GBM


title: Tumor_fresh-frozen_GBM_2819

description: Primary GBM

value: YES


title: Tumor_fresh-frozen_GBM_2456

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_9907

description: Primary GBM


title: Tumor_fresh-frozen_GBM_608

description: Recurrent GBM


title: Tumor_fresh-frozen_MDA_UCSF_3786

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_3833

description: Primary GBM


title: Tumor_fresh-frozen_MDA_UCSF_4787

description: Primary GBM


title: Tumor_fresh-frozen_GBM_673

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_2036

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1817

description: Primary GBM


title: Tumor_fresh-frozen_GBM_2149

description: Primary GBM


title: Tumor_fresh-frozen_GBM_628

description: Recurrent GBM


title: Tumor_fresh-frozen_MDA_UCSF_3905

description: Primary GBM


title: Tumor_fresh-frozen_GBM_2117

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1696

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_1725

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_3521

description: Primary GBM


title: Tumor_fresh-frozen_GBM_3792

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1671

description: Primary GBM


title: Tumor_fresh-frozen_GBM_2057

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_648

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_1735

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_3091

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1481

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_3549

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1388

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_1659

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1796

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_2444

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_2434

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1825

description: Primary GBM


title: Tumor_fresh-frozen_GBM_2371

description: Primary GBM


title: Tumor_fresh-frozen_GBM_751

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1823

description: Primary GBM


title: Tumor_fresh-frozen_GBM_681

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_2480

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_953

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1782

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_1876

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_2151

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_1310

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_658

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_2073

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1507

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1489

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_923

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_1473

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_1744

description: Primary GBM


title: Tumor_fresh-frozen_GBM_976

description: Primary GBM

source_name: Microarray prepared at U.C.L.A., PMID:15374961


title: Tumor_fresh-frozen_GBM_931

description: Primary GBM


title: Tumor_fresh-frozen_GBM_3199

description: Primary GBM


title: Tumor_fresh-frozen_GBM_863

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_1835

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_3094

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_749

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_706

description: Primary GBM


title: Tumor_fresh-frozen_GBM_2017

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_800

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_2015

description: Primary GBM


title: Tumor_fresh-frozen_GBM_2013

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1469

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1902

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1039

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1798

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1516

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1398

description: Primary GBM


title: Tumor_fresh-frozen_GBM_954

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_834

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_3184

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1673

description: Primary GBM


title: Tumor_fresh-frozen_GBM_3471

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_604

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1043

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1032

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_2402

description: Primary GBM


title: Tumor_fresh-frozen_GBM_697

description: Primary GBM


title: Tumor_fresh-frozen_GBM_932

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_597

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_1900

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1495

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1667

description: Primary GBM


title: Tumor_fresh-frozen_GBM_660

description: Primary GBM


title: Tumor_fresh-frozen_GBM_712

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1745

description: Primary GBM


title: Tumor_fresh-frozen_GBM_2098

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1675

description: Primary GBM


title: Tumor_fresh-frozen_GBM_2158

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_1022

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_1354

description: Primary GBM


title: Tumor_fresh-frozen_GBM_746

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_839

description: Primary GBM


title: Tumor_fresh-frozen_GBM_2079

description: Primary GBM


title: Tumor_fresh-frozen_GBM_2166

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1905

description: Primary GBM


title: Tumor_fresh-frozen_GBM_995

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1414

description: Primary GBM


title: Tumor_fresh-frozen_GBM_2029

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_824

description: Primary GBM


title: Tumor_fresh-frozen_GBM_585

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1423

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1342

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_1478

description: Primary GBM


title: Tumor_fresh-frozen_GBM_1463

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_1656

description: Primary GBM


title: Tumor_fresh-frozen_GBM_938

description: Recurrent GBM


title: Tumor_fresh-frozen_GBM_1038

description: Primary GBM