title: RNA-seq of cytoplasmic fraction in control condition  replicate1

value: control condition

value: cytoplasmic


title: HeLa, Lactate, Hcar1 C-term flag replicate 2

status: Public on Nov 15 2023

type: SRA

city: Montréal

first: Gael

middle: Louis Max

last: Cagnone

state: QC

address: 3175 Chemin de la Côte-Sainte-Catherine

department: The Montreal single-cell Academy

country: Canada

institute: CHU Sainte Justine

description:
Sample_C-81_L_A.bw
ChIP_NoLigand_vs_input_peaks.narrowPeak

library_source: genomic

data_processing:
ChipSeq pipeline from GenPipe V3.01 beta (Bourgey et al., 2019).
module_bwa=mugqic/bwa/0.7.12  module_homer=mugqic/homer/4.9.1  module_java=mugqic/java/openjdk-jdk1.8.0_72  module_macs2=mugqic/MACS2/2.1.1.20160309  module_mugqic_R_packages=mugqic/mugqic_R_packages/1.0.4  module_mugqic_tools=mugqic/mugqic_tools/2.1.9  module_pandoc=mugqic/pandoc/1.15.2  module_perl=mugqic/perl/5.22.1  module_picard=mugqic/picard/2.0.1  module_python=mugqic/python/2.7.13  module_R=mugqic/R_Bioconductor/3.5.0_3.7  module_samtools=mugqic/samtools/1.3.1  module_trimmomatic=mugqic/trimmomatic/0.36  module_weblogo=mugqic/weblogo/3.3  module_deeptools=mugqic/deepTools/2.5.3  #module_sambamba=mugqic/sambamba/0.6.5  module_ucsc=mugqic/ucsc/v346  module_multiqc=mugqic/MultiQC/v1.3dev
Assembly: hg19
Supplementary files format and content: bigWig, narrowPeak (except for Input sample)

molecule: genomic DNA

organism: Homo sapiens

source_name: HeLa cells

growth_protocol: HeLa (CCL-2 ATCC) and A549 (CCL-185 ATCC) were purchased from commercial vendors and maintained according to the manufacturers protocol in DMEM, 10% FBS and 1% Pen/Strep, U-251MG cells were a kind gift from Dr. Hardy’s lab and maintained in EMEM + 2 mM Glutamine + 1% non-essential amino acids + 1 mM Sodium Pyruvate + 10% FBS and 1% Pen/Strep in a humidified incubator with 5% CO2 at 37 °C. Stable cells were generated using appropriate drug selection (G-418, Puromycine) after plasmid transfection or viral transduction, and were maintained in these antibiotic instead of Pen/Strep.

extract_protocol:
Chromatin immunoprecipitation (ChIP) was performed using SimpleChIP® Enzymatic Chromatin IP Kit (Cell Signaling) based on manufacturer’s protocol. Briefly, DNA-protein complexes were crosslinked using 1% final concentration of formaldehyde (Sigma) for 10min at RT, and quenched with Glycine (final concentration of 125mM). Cells were then washed with cold PBS + PI cocktail, scraped into conical tubes and centrifuged to remove the supernatant. After isolation, nuclei were treated with micrococcal nuclease to digest the DNA, and then sonicated. Digested chromatin was analyzed by agarose gel. Chromatins were then incubated with immunoprecipitating antibody O/N at 4°C with rotation. Control samples were incubated with IgG antibody. ChIP-grade protein G magnetic beads were added to the IP reactions and incubated for 2h at 4°C with rotation. Beads were then washed with low- to high-salt wash buffers and chromatin was eluted in elution buffer for 30min at 65°C. Chromatins were reverse-crosslinked with NaCl and proteinase K and incubation at 65°C for 2h. DNA was purified with spin columns, and analyzed by qPCR or sent to Next Generation Sequencing.
ChIP-seq. Samples were analyzed with bioanalyzer for quality control and single-end NGS was performed at IRIC genomic platform with Nextseq 500 illumina system.
ChIP-seq. Samples were sequenced with a depth of ~35M per sample with 75 cycles. Both C- and N-terminus flag tagged cells were used for ChIP-seq studies. Two samples from each terminus tagged cells were used for either lactate or vehicle (PBS); in total 4 samples per treatment group, and only shared genes in each group was used for further bioinformatic analysis.

treatment_protocol: A stock concentration of 500 mM lactate (in PBS and pH adjusted to 7.4) was used for cell stimulation and similar volume of PBS as vehicle was used as control.

tag: cell line

value: HeLa cells

tag: cell type

value: Cervical cancer cells

tag: genotype

value: WT

tag: treatment

value: Lactate


title: 2fTGH,interferon alpha,2h,rep1

city: Poznan

first: Hans

last: Bluyssen

address: Uniwersytetu Poznańskiego 6

department: Laboratory of Human Molecular Genetics

country: Poland

institute: Adam Mickiewicz University

library_source: transcriptomic

data_processing:
After quality control assessments using FastQC, fastq files were mapped to the Homo sapiens GRCh38/hg38 genome build (release-100) using STAR version 2.7.3a
Read counts were generated using FeatureCounts v1.6.2 with default parameters
For U3C and ST1-ST2-IRF9-U3C Salmon v1.10.2 have been used to count transcript-level abundance estimates with gencode.v43.basic.annotation GTF file
Counts normalization and DEG analysis were performed using the DESeq2 v.1.30.1 package in R version 4.0.3
The Wald Test (for  U3C and ST1-ST2-IRF9-U3C) or likelihood ratio test (LRT; for the rest of the cell lines) was used to identify DEG. Huh7.5 wild-type cells and Huh7.5 STAT1 K.O. data have been submitted previously as part of GSE222668 SuperSeries
Assembly: hg38
Supplementary files format and content: normalized counts in csv format

molecule: total RNA

source_name: Human fibrosarcoma

growth_protocol: DMEM; 10% fetal bovine serum (FBS); 2mM L-glutamine; 100 IU/ml penicillin,100 µg/ml streptomycin,250 ng/ml amphotericin B. Cells were cultured at 37C at 5% CO2

extract_protocol:
Total RNA was extracted using the GeneMATRIX Universal RNA Purification Kit. 500 ng of purified total RNA was then reverse-transcribed using ThermoFisher Scientific reagents
RNA libraries were prepared in three biological repeats from 1μg of total RNA using NEBNext® Ultra™ or Ultra™ II RNA Library Prep Kit for Illumina® (New England Biolabs, NEB) together with NEBNext Poly(A) mRNA Magnetic Isolation Module (NEB) and NEBNext® Multiplex Oligos for Illumina® (NEB), according to the manufacturer's protocol

treatment_protocol: Cells were starved with medium containing 1% FBS concentration and subsequently treated with 1000U/ml of IFN alpha up to 72h

tag: tissue

value: Human fibrosarcoma

value: interferon alpha,2h


title: RNA-seq of nucleoplasm fraction in control condition  replicate1

city: San Diego

first: Yajing

last: Hao

state: CA

address: George Palade Laboratories 9500 Gilman Drive, Room 217

department: Dept. of Cellular and Molecular Medicine

country: USA

institute: University of California, San Diego

data_processing:
After obtaining raw RNA-Seq data, we first used Trimmomatic to perform sliding window trimming, cutting the average quality once within the 4-bp window falling below 20 and removing the trimmed read if it had a length less than 38. SortMeRNA (Kopylova et al., 2012) was used to filter ribosomal RNAs with default parameters. We mapped the filtered reads to the genome (genome version hg38) using STAR (Dobin et al., 2013) with parameters --outFilterScoreMinOverLread 0.1, --outFilterMatchNminOverLread 0.1, --outFilterMismatchNmax 4 and --outFilterMultimapNmax 8.
After obtaining the mapping files, we removed the duplicate reads using Picard (http://broadinstitute.github.io/picard/) with parameters MarkDuplicates and REMOVE_DUPLICATES = true. We calculated the gene read counts using FeatureCounts (Liao et al., 2014) and converted them to FPKM using the edgeR (Robinson et al., 2010) package in R language. The bigwig files of each RNA-Seq data set from the sense strand and antisense strand were obtained using bamCoverage from DeepTools with a parameter --binSize 1, --ignoreDuplicates, –minMappingQuality 255 and –normalizeUsing CPM.
For the analysis of relative gene abundance and reads signals in different subcellular fractions, we constructed an in-house reference file by combing the genome assembly mm10 with our in-house spike-in sequence (XXX and XXX). The RNA-seq data of each fraction were mapped to the in-house reference and the ratio of reads that mapped to spike-in was also calculated ((reads mapped to spike-in)/(total mappable reads)). The FPKM value of each gene and the bigwig file signals was further normalized by the corresponding ratio of spike-in. We constructed the new Exon and intron annotation files based on the latest ReSeq gene annotation downloaded from UCSC. The SPI value and 3SS ratio were calculated as previously described (Herzel and Neugebauer, 2015).
Genome_build: hg38

source_name: HeLa S3 cell

growth_protocol: Cells were grown in DMEM supplemented with 10% FBS and 1 x penicillin-streptomycin, at 37 °C in a 5% of CO2 incubator. Cells were negative for mycoplasma (tested every three months).

extract_protocol: Each RNA was extracted using Trizol reagent and coupled with Direct-zol RNA Miniprep kit according to the manufacturer’s instructions.

treatment_protocol: The cell fractionation was performed as previously described, with additional modifications. Briefly, 5 x 106 cells were gently trypsinized and collected by centrifugation. the cell pellets were rinsed twice with ice-cold 1 x PBS and then were lysed by ice-cold CE buffer (10 mM HEPES [pH 7.5], 0.1 % NP-40, 1 mM EDTA, 1 mM DTT, 60 mM KCl and 340 mM Sucrose) for 5 min on ice. The supernatant (cytoplasmic fraction) was collected by centrifugation. the nuclei pellets were gently rinsed with ice-cold 1 x PBS/1 mM EDTA then gently resuspended in ice-cold glycerol buffer (20 mM Tris-HCl [pH 7.5], 75 mM NaCl, 0.5 mM EDTA, 0.85 mM DTT and 50% glycerol). Gently mix with equal volume of nuclei lysis buffer (10 mM HEPES [pH 7.5], 1.0% NP-40, 0.2 mM EDTA, 1 mM DTT, 7.5 mM MgCl2, 300 mM NaCl and 1 M urea) and incubated on ice for 3 min, then collect the supernatant (nucleoplasm fraction) by centrifugation. the chromatin pellets were gently rinsed twice with ice-cold 1 x PBS/1 mM EDTA and then dissolved with TRIzol reagents (Invitrogen) for extracting chromatin-associated RNA. The purified chromatin-associated RNA was used for RNA-seq library preparation. RNA-seq libraries were generated using the Illumina TruSeq Stranded Total RNA Library Prep Gold with TruSeq Unique Dual Indexes. Samples were processed following manufacturer’s instructions, except modifying RNA shear time to five minutes. The libraries were multiplexed and sequenced with 100 bp paired end (PE100) to a depth of approximately 30 million reads per library on an Illumina NovaSeq 6000.

tag: fraction

value: nucleoplasm


title: HeLa, Lactate, Hcar1 N-term flag replicate 2

description:
Sample_3_1-81_L_A.bw
ChIP_NoLigand_vs_input_peaks.narrowPeak


title: RNA-seq of chromatin fraction in kdRpb9 replicate2

value: chromatin


title: Trophozoites, RNAseq_MorcWT_Mel1

city: Sao Paulo

first: Maneesh Kumar

last: Singh

state: SP

address: Av. Prof. Lineu Prestes, 580

country: Brazil

institute: University of Sao Paulo

description:
MS-0-Mel-1
RNAseq of trophozoites stage Plasmodium falciparum PfMORC transgenic wildtype parasite treated with 100nM melatonin for 5 hours

data_processing:
The quality of the RNA-seq libraries was evaluated using the FastQC tool. Next, we used Salmon (V1.9.0) quant with default arguments to quantify the expression of all transcripts in the PlasmoDB release-58 Pfalciparum3D7 genome. The transcript expression was summarized to gene-level expression with tximport 1.22.0. Finally, the gene counts were used to detect differentially expressed genes (DEGs) with DESeq2 (1.34.0). Furthermore, only genes with an >1 log2 fold change and adjusted p value <0.1 were considered significant for further analysis.
Assembly: PlasmoDB release-58 Pfalciparum3D7
Supplementary files format and content: PfMORC_gene_TPM.tsv, sf files

organism: Plasmodium falciparum

source_name: whole organism

growth_protocol: The P. falciparum strains were cultured at 37°C in RPMI 1640 medium supplemented with 0.5% Albumax II (Gibco). Parasites were grown under a 5% CO2, 5% O2, and 90% N2 atmosphere. Cultures were synchronized with 5% sorbitol.

extract_protocol:
Total RNA was extracted following the manufacturer’s protocol, and an RNA cleanup kit (Qiagen) was used to achieve high-purity RNA. The isolated RNA was quantified using a NanoDrop ND-1000 UV/Vis spectrophotometer, and RNA quality was determined using an RNA ScreenTape System (Agilent 2200 TapeStation). Total RNA (10000 ng) from each sample was stabilized in RNAStable (Biomatrica) and sent to the Micromon Genomics facility at Monash University for next-generation sequencing.
RNA samples were prepared using the MGITech RNA Directional Library Prep Kit V2 (Item No. 1000006385), as per the manufacturer's instructions, with the following parameters: input RNA: 50 ng, fragmentation: target of 200 bp-400 bp, 87 °C for 6 mins, adapter clean-up: 200 bp-400 bp and library amplification cycles: 16. Libraries were assessed for quantity using the Invitrogen Qubit and dsDNA HS chemistry (Item No. Q33230) and quality/quality using the Agilent Fragment Analyser 5200 with the HS NGS Fragment Kit (Item No. DNF-473-0500). The libraries were pooled in equimolar concentrations and sequenced using an MGITech DNBSEQ-G400RS sequencing instrument with High-Throughput Sequencing Set (FCL PE100, Item No. 1000016950) chemistry.

treatment_protocol: To induce PfMORC knockdown, tightly synchronized parasites at young trophozoite stage (22hpi) were treated with 2.5 mM glucosamine (GlcN) till next cycle. Parasites at 34hpi were harvested for total RNA extraction and stored in Trizol reagent. For melatonin assay, when majority of parasites reached to 28hpi, 100 nM melatonin was added in culture for 5h and then parasites were harvested and stored in Trizol reagent.

tag: isolate

tag: Stage

value: trophozoites

value: 100nM Melatonin

tag: time

value: 5 hours

value: whole organism


title: 2fTGH,untreated,rep1

value: untreated


title: Trophozoites, RNAseq_MorcWT_Con2

description:
MS-0-Con-2
RNAseq of trophozoites stage Plasmodium falciparum PfMORC transgenic wildtype parasite

value: control


title: HeLa, Lactate, Hcar1 N-term flag replicate 1


title: Hela shHCAR1 with Lactate replicate 1

data_processing:
RNAseq data were pre-processed using the RNAseq next-flow pipeline(Ewels et al., 2020) with the star_salmon aligner and the salmon pseudo-aligner (reference genome GRCh38).
Gene counts were normalized and scaled to perform differential gene expression analysis between groups using Seurat after regressing for batch effect(Hao et al., 2021).
Assembly: GRCh38
Supplementary files format and content: salmon.merged.gene_counts.tsv

extract_protocol:
Equal number of cells were seeded in 10cm dish and let to grow a density of 70-80% confluency. Lactate was added to the final concentration of 10mM (or equal volume of PBS) and incubated to 6 hours. RNA was extracted with RNeasy mini Kit (Qiagen). Samples were sent to IRIC genomic platform for analysis and sequencing. RNA integrity and quantity was validated with Bioanalyzer and then used for sequencing.
Samples were analyzed with bioanalyzer for quality control and single-end NGS was performed at IRIC genomic platform with Nextseq 500 illumina system.
Samples were sequenced with Nextseq 500 illumina system with a depth of ~35M per sample with single-end 75 cycles. Each sample was sequenced at least in triplicates.

treatment_protocol: A stock concentration of 500 mM lactate (in PBS and pH adjusted to 7.4) was used for cell stimulation and similar volume of PBS as vehicle was used as control. Lentiviral shRNA against HCAR1 targeting 3’UTR regions of the gene (shHCAR1a: GCTTTATTTCAGGCCGAATGA; shHCAR1b: GCTCTGACCTTCTTCAAATCT) and the scrambled shRNA were purchased from GeneCopoeia (Cat# LPP-HSH007585-LVRU6MP-100). Targeting the 3’UTR regions allowed us to use our previous plasmid constructs for rescue experiments.

value: WT - shHCAR1


title: RNA-seq of chromatin fraction in kdRpb9  replicate1


title: HeLa, PBS,Hcar1 C-term flag replicate 1

description:
Sample_C-81_A.bw
ChIP_Ligand_vs_input_peaks.narrowPeak

value: PBS


title: RNA-seq of chromatin fraction in kdRpb1 replicate2


title: HeLa, PBS, Hcar1 C-term flag replicate 2


title: Mouse Insulinoma 6 (MIN6) at 2.8mM extracellular glucose, 1hr

city: New Delhi

first: Firdos

last: Firdos

state: New Delhi

address: Hauz khas

department: Kusuma School of Biological Sciences

country: India

institute: Indian Institute of Technology, Delhi

data_processing:
The validated libraries were sequenced on Illumina Hiseq X10 Platform for 2x150bp read length with a read depth of 50 million reads.
Mapping to a reference genome is a crucial factor, Here mapping was done on Hisat2 by taking reference genome GRCm38 of Mus Musculus.
Gene expression analysis was done by using cuffdiff in the form of Fragments Per Kilobase of transcript per Million mapped reads (FPKM) whereas gene annotation was done with the help of uniport.
The log2 fold change (log2fc) was set at a threshold of ± 1.5. In terms of FPKM. Gene expression analysis was done by using cuffdiff in the form of Fragments Per Kilobase of transcript per Million mapped reads (FPKM) whereas gene annotation was done with the help of uniport.
Assembly: GRCm38
Supplementary files format and content: FPKM values for each Sample

organism: Mus musculus

source_name: Mouse Insulinoma 6 (MIN6)

growth_protocol: Mouse Insulinoma 6 (MIN6) cells  were maintained in DMEM supplemented with 10% fetal bovine serum (FBS) and antibiotics in humidified atmosphere with 5% CO2 at 37C

extract_protocol:
RNA was isolated followed by Trizol according to the manufacturer’s protocol. The quality and quantity of isolated RNA were checked using Agilent Tapestation 2200 and Qubit 3.0 fluorimeter.
Transcriptome studies have been done by Agrigenome Lab Private Limited, Kerala, India. RNA library was prepared and checked by using  Agilent Tapestation 2200 and quantified using Qubit 3.0 fluorimeter.

treatment_protocol: Cells at a density of 10*105 cells per well were seeded in a 6-well plate and used for the experiment after getting 75% confluency. Cells were equilibrated at 2.8mM of glucose for 0.5 hr and then stimulated at 2.8 HoG and 25mM HyG of glucose for 1hr in KRBH buffer.

value: Mouse Insulinoma 6 (MIN6)

value: Pancreatic Beta-cell line

value: 2.8mM extracellular glucose, 1hr

tag: condition

value: Hypoglycemic treatment


title: RNA-seq of nucleoplasm fraction in kdRpb1 replicate1


title: Trophozoites, RNAseq_MorcWT_Con1

description:
MS-0-Con-1
RNAseq of trophozoites stage Plasmodium falciparum PfMORC transgenic wildtype parasite

value: WT


title: 2fTGH,untreated,rep2

value: Human fibrosarcoma


title: Mouse Insulinoma 6 (MIN6) at 25mM extracellular glucose, 1hr

value: 25mM extracellular glucose, 1hr

value: Hyperglycemic treatment


title: RNA-seq of chromatin fraction in control condition  replicate2

value: control condition

value: chromatin


title: Exudates, P. communis, rep1 [ExEu]

city: Jerusalem

first: Yuval

last: Nevo

address: Ein Kerem Campus

country: Israel

institute: The Hebrew University of Jerusalem

description:
processed data columns: A-E, microRNA annotations, including pre-miR name and genomic location; mature miR name, aliases (other mature miRs with the exact same sequence) and sequence; F-K, stigma exudates data, ExAA and ExAS for P. pyrifolia, ExEu for P. communis, ExWG, ExWM and ExWS for P. syriaca; L-Q, stigma tissue data, SMAA and SMAS for P. pyrifolia, SMEu for P. communis, SMWG, SMWM and SMWS for P. syriaca.
ExEu

data_processing:
Trimming raw reads with Cutadapt, v1.1, using a quality threshold of 32, removing adapter and poly-A sequences that were added by the CATS kit, and keeping reads 18 to 28 bases long.
Filtering low quality reads with fastq_quality_filter, FASTX package v0.0.14, using -q 20 and -p 85.
Alignment and counting of microRNAs expression with miRExpress, v2.0, using the ‘Raw_data_parse’, ‘alignmentSIMD’ and ‘analysis’ steps. Reference microRNAs were taken from miRBase, version 22, using all Rosaceae species in the database - Fragaria vesca, fve; Malus domestica, mdm; and Prunus persica, ppe. Alignment allowed up to 7% mismatches and mature microRNA assignment allowed for offset of up to 11 bases and required at least 50% overlap.
Mature microRNAs having the exact same sequence were collapsed to a unique representative, averaging the counts from all its appearances in the dataset.
Identified miRs were further analyzed to find potential targets in the plant A. thaliana, using the web server 'psRNATarget' with default parameters and expectation threshold <=2.5. Enrichment analysis using AgriGO2 was performed on the lists of potential targets in Arabidopsis.
Assembly: miRBase version 22
Supplementary files format and content: raw_counts_all.xlsx: an Excel file with a single header row, followed by a row for each unique mature microRNA in the dataset of Rosaceae miRs from miRBase v22. Columns A-E include miRs annotations; columns F-K include the data for stigma exudates samples; columns L-Q include the data for stigma tissue samples.
Supplementary files format and content: Supporting_dataset_1.docx: details of miRs identified in stigma exudates and tissue, as explained within the file.
Supplementary files format and content: Supporting_dataset_2.xlsx: potential target genes in A. thaliana, as given by 'psRNATarget'. Includes two sheets, one for exudate miRs and one for stigma specific ones.
Supplementary files format and content: Supporting_dataset_3.xlsx: enriched GO terms. Includes two sheets, one for predicted targets of exudate miRs and one for predicted targets of stigma specific miRs.
Supplementary files format and content: Supporting_dataset_4.xlsx: potential target genes of exudate miRs in A. thaliana pollen transcriptome.

organism: Pyrus communis

source_name: Stigma exudates

extract_protocol:
Stigma lobes were randomly excised from several flowers at 12 hours after anthesis (HAA). Stigma exudates were collected in a nondestructive manner as described earlier (Pusey et al., 2008). RNA was isolated with the cf-RNA isolation  kit, NORGEN BIOTEK, #29600.
Libraries were prepared using CATS Small RNA kit (C05010044), then size selected by 4% agarose gel.

treatment_protocol: Blooming branches were collected at the field during spring 2018 (March-April), immediately placed in water cans and transferred after removing all the open flowers, for overnight acclimation in growth room (day/night cycles of 16 h at 24 °C and 8 h at 18 °C, humidity of 40–60% and white light of 120–130 µmol/m2 sec).

value: Stigma exudates

tag: cultivar

value: Spadona

tag: altitude

tag: sampling time

value: 12 HAA


title: RNA-seq of chromatin fraction in kdRpb1  replicate1


title: RNA-seq of chromatin fraction in control condition  replicate1


title: HeLa, PBS, Hcar1 N-term flag replicate 1

description:
Sample_3_1-81_A.bw
ChIP_Ligand_vs_input_peaks.narrowPeak

value: HeLa cells

value: Cervical cancer cells


title: Trophozoites, RNAseq_MorcWT_Con3

description:
MS-0-Con-3
RNAseq of trophozoites stage Plasmodium falciparum PfMORC transgenic wildtype parasite

value: trophozoites

value: control

value: whole organism


title: Control 28

status: Public on Nov 14 2023

type: RNA

city: Rotterdam

first: Eveline

middle: Emma

last: Vietsch

state: South Holland

address: Dr. Molewaterplein 40

country: Netherlands

institute: Erasmus MC

description:
VA GALT benign colon
VAsana28

hyb_protocol: Gene expression quantification was performed using the nCounter PanCancer Immune Profiling Panel (NanoString, XT-CSO-HIP1-12), containing 730 immune target genes and up to 40 reference genes. Between 310-320 ng RNA (adjusted for RNA fragments >300 nucleotides) per sample was processed following the nCounter FLEX System (NanoString, GLMX_ST0002). RNA was hybridized with capture and reporter probes at 65 °C for 17 hours in a SimpliAmp Thermal Cycler (Applied Biosciences), before loading the samples into the nCounter FLEX system.

scan_protocol: Image acquisition was performed using the nCounter Digital Analyzer 5s (NanoString) by scanning 490 Fields of View

data_processing: mRNA counts were extracted from the raw data RCC files using nSolver analysis software v4.0 (NanoString). Gene expression was normalized using the most stable reference genes from the panel, selected by the geNorm algorithm incorporated in the Advanced Analysis module of nSolver software v2.0 (NanoString).

source_name: Healthy FFPE vermiform appendix

extract_protocol: RNA was isolated using the RNeasy FFPE Kit (Qiagen, 73504), following the manufacturer's instructions. RNA was eluted in 17 µL nuclease-free water. The RNA integrity and concentration were measured using the Bioanalyzer RNA 6000 Nano assay (Agilent, 5067-1511). Only samples with >12% of RNA fragments longer than 300 nucleotides and a scaled concentration above 42.8 ng/µL were used for gene expression profiling.

treatment_protocol: Resected appendixes were fixed in 10% formalin. Appendixes were sectioned and embedded in paraffin. The FFPE VA were sectioned (10 x 10 µm thick per patient sample) and deparaffinized in xylene for 2 min, 90% ethanol for 2 min, 70% ethanol for 2 min, and distilled water for 4 min. After the slides dried for 2 hours, regions with mucosa and submucosa of the VA were scraped with a clean scalpel into 1.5 mL microcentrifuge tubes.

tag: disease

value: Benign colon disease

tag: neoadjuvant therapy

tag: Sex

value: Female

tag: age

value: 63 years


title: KMT2B-Int iPSCs

city: Kamakura

first: Satoshi

last: Kondo

state: Kanagawa

address: 10-1 tebiro 6-chome

country: Japan

institute: Toray Industries,Inc.

hyb_protocol: Hybridized for 16 h at 37 C with rotary shake (250 rpm). Hybridization buffer and washing protocol was followed by the protocol supplied by TORAY Industries, Inc..

scan_protocol: 3D-Gene Scanner ((Toray Industries Inc., Tokyo, Japan) was used for scanning. Images were quantified using Extraction(Toray Industries Inc., Tokyo, Japan).

data_processing: The raw data of each spot was normalized by substitution with a mean intensity of the background signal determined by all blank spots’ signal intensities of 95% confidence intervals.

source_name: Int

label_protocol: cDNA and Amino Allyl aRNA was synthesis by Amino Allyl MessageAmp II aRNA Amplification Kit (Ambion#1753). CyeDye Coupling and fragmentation were performed as the protocol supplied by TORAY Industries, Inc..

extract_protocol: Total RNA was extracted by RNeasy Mini (QIAGEN, Venlo, Netherlands).

tag: cell

value: induced pluripotent stem cells


title: Control 22

description:
VA GALT benign colon
VAsana22

value: Male

value: 43 years


title: Control 27

description:
VA GALT benign colon
VAsana27

value: 55 years


title: Control 37

description:
VA GALT benign colon
VAsana37

value: 48 years


title: Control 38

description:
VA GALT benign colon
VAsana38


title: Control 34

description:
VA GALT colon AC
VAsana34

value: Colon adenocarcinoma

value: 95 years


title: Control 36

description:
VA GALT benign colon
VAsana36

value: 53 years


title: HeLa, PBS, Hcar1 N-term flag replicate 2

tag: cell line

tag: cell type

value: WT

value: PBS


title: KMT2B-HTiPSCs

source_name: HT


title: Control 35

description:
VA GALT benign colon
VAsana35


title: Control 32

description:
VA GALT benign colon
VAsana32

value: 71 years


title: ColonAC 19

description:
VA GALT colon AC
VAsana19

value: 59 years


title: ColonAC 49

description:
VA GALT colon AC
VAsana49

value: 57 years


title: ColonAC 42

description:
VA GALT colon AC
VAsana42

value: 72 years


title: KMT2B-KO iPSCs

source_name: KO


title: Stigma, P. communis, rep1 [SMEu]

description:
processed data columns: A-E, microRNA annotations, including pre-miR name and genomic location; mature miR name, aliases (other mature miRs with the exact same sequence) and sequence; F-K, stigma exudates data, ExAA and ExAS for P. pyrifolia, ExEu for P. communis, ExWG, ExWM and ExWS for P. syriaca; L-Q, stigma tissue data, SMAA and SMAS for P. pyrifolia, SMEu for P. communis, SMWG, SMWM and SMWS for P. syriaca.
SMEu

source_name: Stigma tissue

value: Stigma tissue

value: Spadona

value: 12 HAA


title: ColonAC 18

description:
VA GALT colon AC
VAsana18

value: 67 years


title: ColonAC 14

description:
VA GALT colon AC
VAsana14

value: Female

value: 52 years


title: ColonAC 46

description:
VA GALT colon AC
VAsana46


title: KMT2B-WT iPSCs

source_name: WT

value: induced pluripotent stem cells


title: ColonAC 45

description:
VA GALT colon AC
VAsana45

value: 68 years


title: ColonAC 44

description:
VA GALT colon AC
VAsana44

value: Colon adenocarcinoma

value: Male

value: 76 years


title: APPART 22

description:
VA GALT PDAC
APP-022

value: Pancreatic ductal adenocarcinoma


title: APPART 21

description:
VA GALT PDAC
APP-021

value: 49 years


title: APPART 19

description:
VA GALT PDAC
APP-019


title: APPART 20

description:
VA GALT PDAC
APP-020


title: APPART 18

description:
VA GALT PDAC
APP-018

value: 61 years


title: APPART 17

description:
VA GALT PDAC
APP-017

value: 75 years


title: APPART 9

description:
VA GALT PDAC
APP-009

value: 89 years


title: APPART 13

description:
VA GALT PDAC
APP-013

value: 64 years


title: APPART 14

description:
VA GALT PDAC
APP-014

value: 82 years


title: ColonAC 16

description:
VA GALT colon AC
VAsana16

value: 58 years


title: AR97Q-4

city: Nagoya

first: Madoka

last: Iida

state: Aichi

address: 65 Tsurumai-cho Showa-ku

department: Neurology department

institute: Nagoya University

data_processing:
The quality of the raw paired-end sequence reads was assessed with Fast QC (Version 0.11.5; https://www.bioinformatics.babraham.ac.uk/projects/fastqc/). Low quality (< 20) bases and adapter sequences were trimmed by Trimmomatic software (Version 0.38) with following parameters: ILLUMINACLIP: path/to/adapter.fa:2:30:10 LEADING:20 TRAILING:20 SLIDINGWINDOW:4:15 MINLEN:36. The trimmed reads were aligned to the reference genome using RNA-Seq aligner HISAT2 (Version 2.1.0). The HISAT2-resultant .sam files were converted into .bam files with samtools and used to estimate the abundance of uniquely mapped reads with featureCounts (Version 1.6.3). The raw counts were normalized with transcripts per million (TPM).
Supplementary files format and content: excel file
Supplementary files format and content: FPKM and TPM

source_name: Oli-neu cell

growth_protocol: Oli-neu cells were cultured in Sato medium containing Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 1% (v/v) horse serum, insulin (5 μg/ml), penicillin (100 U/ml), streptomycin (0.1 mg/ml), 1% (v/v) N2 supplement, sodium selenite (190 nM), gentamicin (25 μg/ml), triiodothyronine (400 nM) and L-thyroxine (520 nM). Cells were kept in a humidified atmosphere with 5% CO2 at 37°C.

extract_protocol:
Total RNA was extracted from the OL cell model of SBMA and control using the RNeasy Mini Kit (QIAGEN). The quality and quantity of the RNA obtained was checked using a NanoDrop 2000 spectrophotometer (Thermo Fisher Scientific, Wilmington, DE, United States), and analyzed with the Agilent 2100 Bioanalyzer system (Agilent Technologies Inc).
A library was independently prepared with 1ug of total RNA for each sample by Illumina TruSeq Stranded mRNA Sample Prep Kit (Illumina, Inc.)

treatment_protocol: Lentivirus expressing full-length human AR containing 17 or 97 CAG repeats were introduced into Oli-neu cell, thereby generating cell lines harboring AR-17Q as control cells and cell lines harboring AR-97Q as a cellular model of SBMA. Differentiation was induced by adding 1 μM PD174265 (Calbiochem) to the medium for 72 hours.

value: Oli-neu cell

tag: genotype


title: AR97Q-1


title: AR17Q-4


title: APPART 7

description:
VA GALT PDAC
APP-007

value: 72 years


title: AR97Q-2


title: AR97Q-3


title: AR17Q-2


title: APPART 11

description:
VA GALT PDAC
APP-011

value: Female

value: 59 years


title: APPART 6

description:
VA GALT PDAC
APP-006


title: APPART 2

description:
VA GALT PDAC
APP-002


title: APPART 4

description:
VA GALT PDAC
APP-004


title: AR17Q-1


title: AR17Q-3


title: APPART 3

description:
VA GALT PDAC
APP-003


title: APPART 1

description:
VA GALT PDAC
APP-001

value: 83 years


title: MI-NS,biol rep 1

city: Wuhan

first: Qing

middle: Qing

last: Wu

address: Department of Cardiology, Renmin Hospital of Wuhan University, Jiefang Road 238, Wuhan 430060, P.R. of China.

country: China

institute: Renmin Hospital of Wuhan University

data_processing:
Sequencing read counts were calculated using Stringtie (v.1.3.0). Then expression levels from different samples were normalized by the Trimmed Mean of M values (TMM) method. The normalized expression levels of different samples were converted to FPKM (Fragments Per Kilobase of transcript per Million mapped fragments). The edgeR package of R was used to analyze the difference between intergroup gene expression, the P-values were calculated, and the multiple hypothesis test was performed.
Assembly: mm10
Supplementary files format and content: tab-delimited text file includes raw counts for each Sample.

source_name: heart

extract_protocol:
TransZol Up Plus RNA Kit (ER501-01, TransGen Biotech, China), RNAClean XP Kit (A63987, Beckman Coulter Inc, USA), and RNase-Free DNase Set (79254, QIAGEN GmBH, Germany) were applied to extract and purify total RNA of left ventricle tissues of MI mice.
The purified total RNA was subjected to mRNA separation, fragmentation, first-strand cDNA synthesis, second-strand cDNA synthesis, end repair, and other steps to complete the construction of the sequencing sample library. Later, the library was sequenced with Illumina NovaSeq 6000 sequencer.

tag: tissue

value: heart

tag: treatment

value: MI-NS


title: MI-DAPA, scRNAseq

description: 10 × Genomics

library_source: transcriptomic single cell

data_processing:
High-quality cells with more than 500 genes and low mitochondrial ratios (0.20 or less) were retained. The subsequent analysis used genes with at least one characteristic count over three cells. Unique molecular identifiers for individual cell nuclei barcode-gene conjugates were applied to determine gene expression counts. Only qualified barcodes were taken into consideration for further processing. For realizing cell type recognition and unsupervised clustering, principal component analysis (PCA) was carried out to reduce the dimensions of the combined set of samples. Moreover, we adopted Seurat to further reduce the dimension of all 21583 cells and applied t-distributed stochastic neighbor embedding (t-SNE) to project cells into a two-dimensional space to visualize the data.
Assembly: mm10
Supplementary files format and content: Tab-separated values files and matrix files

molecule: polyA RNA

extract_protocol:
The samples were fully lysed using a lysis buffer (10 mM Tris [pH 7.4], 10 mM NaCl, 3 mM MgCl2, and 0.05% (v/v) NP-40 detergent) and were then filtered by a 30 μm cell strainer. After pelleting, the nuclei were reconstituted in a wash buffer (10 mM Tris [pH 7.4], 10 mM NaCl, 3 mM MgCl2, 1% BSA, 1 mM DTT, RNase inhibitor 1U/µl, nuclease-free water) and combined with 25% optiprep and layered on a 29% optiprep cushion. After centrifugation, the nuclei were reconstituted with the wash buffer again. Finally, the nuclei were resuspended into the nuclei resuspension buffer (nuclei buffer (10XGenomics, 20x) 1x, 1 mM DTT, RNase inhibitor 1U/µl, nuclease-free water) with a concentration of ~1x10^6/ml, and the single-cell nuclei suspension was prepared.
Once the extracted nuclei passed the quality test, single-cell RNA sequencing (RNA-seq) libraries were prepared with Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 on the Chromium Controller (10 × Genomics). Single-nuclei gel beads in the emulsion (GEMs) were produced as directed by the manufacturer. The released RNA of single nuclei was barcoded in each GEM via reverse transcription. Sequencing was performed with a depth of at least half a million reads/cell and 150 bp paired-end reads (PE150) using the Illumina NovaSeq 6000.

value: MI-DAPA


title: MI-NS,biol rep 2


title: MI-DAPA,biol rep 3


title: MI-DAPA,biol rep 2


title: MI-NS, scRNAseq

description: 10 × Genomics


title: MI-DAPA,biol rep 1


title: Sham-NS, scRNAseq

description: 10 × Genomics

value: Sham-NS


title: Mouse_565824_MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO_10Xv3 [L8TX_210226_01_E12]

city: Seattle

first: Cindy

last: van Velthoven

state: WA

address: 615 Westlake Ave N

institute: Allen Institute

description:
WMB_Cell type annotation.xlsx
WMB_sample_metadata.csv
WMB.umap.2d.csv

data_processing:
10x libraries were sequenced on the Illumina NovaSeq6000, and sequencing reads were aligned to the mouse reference transcriptome (M21, GRCm38.p6) using the 10x Genomics CellRanger pipeline (version 6.1.1) with default parameters.
To remove low quality cells, cells were first classified into broad cell classes after mapping to an existing, preliminary version of the taxonomy, and cell quality was assessed based on gene detection, qc score, and doublet score. The qc score was calculated by summing the log transformed expression of a set of genes whose expression level is decreased significantly in poor quality cells. These are housekeeping genes that are strongly expressed in nearly all cells with a very tight co-expression pattern that is anti-correlated with the nucleus localized gene Malat1. Out of the 62 QC genes chosen, 30 are annotated as mitochondrial inner membrane category based on GO ontology cellular component, although they are not located on the mitochondrial chromosome. We used this qc score to quantify the integrity of cytoplasmic mRNA content, which tended to show bimodal distribution. Cells at the low end were very similar to single nuclei, which we removed for downstream analysis. Doublets were identified using a modified version of the DoubletFinder algorithm and removed when doublet score > 0.3. Thresholds were tailored to different cell classes. For example, for neurons (excluding granule cells) we used gene counts cutoff of 2,000 and qc score cutoff of 200.
Assembly: M21, GRCm38.p6
Supplementary files format and content: Text file containing information for location viewing and loading associated data
Supplementary files format and content: Excel file containing cell type annotations
Supplementary files format and content: Comma-separated values file containing cell-level metadata
Supplementary files format and content: Comma-separated values file containing UMAP coordinates for all QC-passed cells

source_name: MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO

extract_protocol:
Allen Institute for Brain Science. Mouse Whole Cell Tissue Processing for 10x Genomics Platform V.9. Protocols.io, doi:dx.doi.org/10.17504/protocols.io.q26g7b52klwz/v9 (2022)
Allen Institute for Brain Science. 10Xv2 RNASeq Sample Processing. Protocols.io, doi:dx.doi.org/10.17504/protocols.io.bq68mzhw (2021); Allen Institute for Brain Science. 10Xv3.1 Genomics Sample Processing V.2. Protocols.io, doi:dx.doi.org/10.17504/protocols.io.dm6gpwd8jlzp/v2 (2022).

value: MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO

value: Light

value: 58 days

tag: donor id


title: Mouse_562458_PONS - Psen_10Xv3 [L8TX_210204_01_C06]

source_name: PONS - Psen

value: PONS - Psen

value: 63 days


title: Mouse_551628_PONS - Pmot-Psat post_10Xv3 [L8TX_201113_01_G06]

source_name: PONS - Pmot-Psat post

value: PONS - Pmot-Psat post

value: 62 days


title: Mouse_551017_HIP - CA_10Xv3 [L8TX_201106_01_C03]

source_name: HIP - CA

value: HIP - CA

value: Dark

value: 59 days


title: Mouse_561534_MY - MYsat-MYmot post_10Xv3 [L8TX_210121_01_H02]

source_name: MY - MYsat-MYmot post

value: MY - MYsat-MYmot post

value: 57 days


title: Mouse_556112_CB - HEM_10Xv3 [L8TX_201217_01_A08]

source_name: CB - HEM

value: CB - HEM

value: 67 days


title: Mouse_566251_PONS - Psen_10Xv3 [L8TX_210311_01_G03]

value: 65 days


title: Mouse_546799_PL-ILA-ORB_10Xv3 [L8TX_201015_01_H02]

source_name: PL-ILA-ORB

value: PL-ILA-ORB


title: MI-NS,biol rep 3

value: heart

value: MI-NS


title: Mouse_570071_MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO_10Xv3 [L8TX_210408_01_F10]

value: MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO

value: Light


title: Mouse_556943_CB - VERM_10Xv3 [L8TX_210107_02_F10]

source_name: CB - VERM

value: CB - VERM

value: 66 days


title: Mouse_568761_TH_10Xv3 [L8TX_210325_01_G07]

source_name: TH

value: TH

value: 64 days


title: Mouse_554919_TH_10Xv3 [L8TX_201210_01_H03]


title: Mouse_566251_MB - MRN-CUN-RN-RR-PPN-PRT-SC-IC_10Xv3 [L8TX_210311_01_H03]

source_name: MB - MRN-CUN-RN-RR-PPN-PRT-SC-IC

value: MB - MRN-CUN-RN-RR-PPN-PRT-SC-IC


title: Mouse_556236_HY LZ_10Xv3 [L8TX_201210_01_E04]

source_name: HY LZ

value: HY LZ

value: Dark

value: 58 days


title: Mouse_546813_RSP_10Xv3 [L8TX_201022_01_E06]

source_name: RSP

value: RSP

value: 69 days


title: Mouse_551629_HIP - CA_10Xv3 [L8TX_201112_01_E05]

value: HIP - CA

value: 61 days


title: Mouse_553672_STR - STRv_10Xv3 [L8TX_201120_01_C10]

source_name: STR - STRv

value: STR - STRv

value: 55 days


title: Mouse_561536_MY - MYsat-MYmot post_10Xv3 [L8TX_210121_01_F03]

value: MY - MYsat-MYmot post


title: Mouse_565915_MY - MYsat-MYmot post_10Xv3 [L8TX_210305_01_D02]


title: Mouse_553675_PONS - Pmot-Psat post_10Xv3 [L8TX_201120_01_E09]

value: PONS - Pmot-Psat post


title: Mouse_560332_MY - MYsat-MYmot post_10Xv3 [L8TX_210114_01_E02]

value: Light

value: 59 days


title: Mouse_574608_MB - MRN-CUN-RN-RR-PPN-PRT-SC-IC_10Xv3 [L8TX_210430_01_B05]


title: Mouse_556112_CB - VERM-CBN_10Xv3 [L8TX_201217_01_F07]

source_name: CB - VERM-CBN

value: CB - VERM-CBN

value: 67 days


title: Mouse_565823_PONS - Psen_10Xv3 [L8TX_210226_01_C12]

value: PONS - Psen

value: 57 days


title: Mouse_546811_STR - STRv_10Xv3 [L8TX_201016_01_H04]

value: 63 days


title: Mouse_551640_MB - VTA-SN_10Xv3 [L8TX_201113_01_G07]

source_name: MB - VTA-SN

value: MB - VTA-SN

value: Dark


title: Mouse_551017_MB - VTA-SN_10Xv3 [L8TX_201106_01_G03]


title: Mouse_553672_PONS - Pmot-Psat ant_10Xv3 [L8TX_201119_01_A09]

source_name: PONS - Pmot-Psat ant

value: PONS - Pmot-Psat ant


title: Mouse_553679_HIP_10Xv3 [L8TX_201120_01_G09]

source_name: HIP

value: HIP


title: Mouse_553675_PONS - Pmot-Psat post_10Xv3 [L8TX_201119_01_G08]


title: Mouse_561536_MY - MYsat-MYmot ant_10Xv3 [L8TX_210121_01_B03]

source_name: MY - MYsat-MYmot ant

value: MY - MYsat-MYmot ant

value: 58 days


title: Mouse_554920_MB - MRN-CUN-RN-RR-PPN-PRT_10Xv3 [L8TX_201210_01_F04]

source_name: MB - MRN-CUN-RN-RR-PPN-PRT

value: MB - MRN-CUN-RN-RR-PPN-PRT


title: Mouse_550850_PAR-POST-PRE-SUB-ProS_10Xv3 [L8TX_201030_01_C12]

source_name: PAR-POST-PRE-SUB-ProS

value: PAR-POST-PRE-SUB-ProS

value: 53 days


title: Mouse_553672_PONS - Pmot-Psat ant_10Xv3 [L8TX_201119_01_E08]

value: 55 days


title: Mouse_557213_CB - VERM-CBN_10Xv3 [L8TX_201217_01_H07]


title: Mouse_539605_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv3 [L8TX_200827_01_F09]

source_name: CTXsp - CLA-EP-LA-BLA-BMA-PA

value: CTXsp - CLA-EP-LA-BLA-BMA-PA

value: Light


title: Mouse_539606_STR - sAMY_10Xv3 [L8TX_200827_01_C10]

source_name: STR - sAMY

value: STR - sAMY

value: 59 days


title: Mouse_556848_HY LZ_10Xv3 [L8TX_201217_01_F06]

value: HY LZ

value: 60 days


title: Mouse_546763_AI-CLA_10Xv3 [L8TX_201008_01_H10]

source_name: AI-CLA

value: AI-CLA


title: Mouse_553679_VIS-PTLp_10Xv3 [L8TX_201120_01_H09]

source_name: VIS-PTLp

value: VIS-PTLp


title: Mouse_551018_PONS - Pmot-Psat ant_10Xv3 [L8TX_201113_01_H07]

value: Dark

value: 66 days


title: Mouse_551630_STR - STRd_10Xv3 [L8TX_201105_01_G01]

source_name: STR - STRd

value: STR - STRd

value: 54 days


title: Mouse_536274_STR - sAMY_10Xv3 [L8TX_200813_01_G11]


title: Mouse_561534_MY - MYsat-MYmot ant_10Xv3 [L8TX_210121_01_A03]

value: MY - MYsat-MYmot ant

value: 57 days


title: Mouse_551638_PONS - Pmot-Psat post_10Xv3 [L8TX_201113_01_D07]

source_name: PONS - Pmot-Psat post

value: PONS - Pmot-Psat post

value: 62 days


title: Mouse_551629_HIP - CA_10Xv3 [L8TX_201112_01_A05]

source_name: HIP - CA

value: HIP - CA

value: 61 days


title: Mouse_570071_CB - VERM-CBN_10Xv3 [L8TX_210408_01_G10]

value: CB - VERM-CBN

value: Light

value: 67 days


title: Mouse_546811_STR - STRv_10Xv3 [L8TX_201016_01_A05]

value: STR - STRv

value: 63 days


title: Mouse_551640_HIP - CA_10Xv3 [L8TX_201112_01_F04]


title: Mouse_544398_STR - STRd_10Xv3 [L8TX_200924_01_C05]

value: 58 days


title: Mouse_572419_MY - MYsat-MYmot_10Xv3 [L8TX_210422_01_D02]

source_name: MY - MYsat-MYmot

value: MY - MYsat-MYmot


title: Mouse_548212_ENT_10Xv3 [L8TX_201029_01_B11]

source_name: ENT

value: ENT

value: 69 days


title: Mouse_565915_MY - MYsat-MYmot ant_10Xv3 [L8TX_210305_01_E02]

value: Dark


title: Mouse_546759_PL-ILA-ORB_10Xv3 [L8TX_201015_01_C03]

source_name: PL-ILA-ORB

value: PL-ILA-ORB


title: Mouse_568465_STR - LSX_10Xv3 [L8TX_210325_01_E08]

source_name: STR - LSX

value: STR - LSX


title: Mouse_554814_TH_10Xv3 [L8TX_201210_01_A04]

source_name: TH

value: TH


title: Mouse_547057_ENT_10Xv3 [L8TX_201022_01_C07]


title: Mouse_551638_PONS - Pmot-Psat post_10Xv3 [L8TX_201112_01_B06]

value: PONS - Pmot-Psat post


title: Mouse_536274_STR - sAMY_10Xv3 [L8TX_200813_01_E10]

value: STR - sAMY

value: 66 days


title: Mouse_533254_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv3 [L8TX_200730_01_B02]

value: CTXsp - CLA-EP-LA-BLA-BMA-PA

value: 68 days


title: Mouse_546762_AI-CLA_10Xv3 [L8TX_201008_01_F10]

value: AI-CLA

value: Light

value: 55 days


title: Mouse_554814_HY LZ_10Xv3 [L8TX_201210_01_C04]

source_name: HY LZ

value: HY LZ

value: 67 days


title: Mouse_554922_MB - SC-IC_10Xv3 [L8TX_201210_01_E03]

source_name: MB - SC-IC

value: MB - SC-IC


title: Mouse_556236_TH_10Xv3 [L8TX_201210_01_G03]

value: 58 days


title: Mouse_572421_MY - MYsat-MYmot_10Xv3 [L8TX_210422_01_B02]

value: MY - MYsat-MYmot

value: 64 days


title: Mouse_565913_PONS - Psen_10Xv3 [L8TX_210226_01_H11]

source_name: PONS - Psen

value: PONS - Psen

value: Dark

value: 54 days


title: Mouse_539463_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv3 [L8TX_200827_01_B09]

value: 59 days


title: Mouse_546759_PL-ILA-ORB_10Xv3 [L8TX_201015_01_F03]

value: PL-ILA-ORB

value: 62 days


title: Mouse_544398_CNU - PAL_10Xv3 [L8TX_200924_01_D06]

source_name: CNU - PAL

value: CNU - PAL


title: Mouse_560332_MY - MYsat-MYmot ant_10Xv3 [L8TX_210114_01_D02]

source_name: MY - MYsat-MYmot ant

value: MY - MYsat-MYmot ant


title: Mouse_568464_STR - LSX_10Xv3 [L8TX_210325_01_A08]

value: STR - LSX

value: 68 days


title: Mouse_554311_SSs-GU-VISC-AIp_10Xv3 [L8TX_201203_01_D11]

source_name: SSs-GU-VISC-AIp

value: SSs-GU-VISC-AIp


title: Mouse_551016_MB - VTA-SN_10Xv3 [L8TX_201106_01_H12]

source_name: MB - VTA-SN

value: MB - VTA-SN

value: Light


title: Mouse_574606_TH_10Xv3 [L8TX_210430_01_D04]

value: TH


title: Mouse_574607_MY - MYsat-MYmot_10Xv3 [L8TX_210430_01_C05]

value: 55 days


title: Mouse_540565_STR - sAMY_10Xv3 [L8TX_200831_01_H10]

source_name: STR - sAMY

value: STR - sAMY


title: Mouse_550849_PAR-POST-PRE-SUB-ProS_10Xv3 [L8TX_201030_01_D12]

source_name: PAR-POST-PRE-SUB-ProS

value: PAR-POST-PRE-SUB-ProS

value: 53 days


title: Mouse_568465_TH_10Xv3 [L8TX_210325_01_F07]

value: 67 days


title: Mouse_550848_STR - STRd_10Xv3 [L8TX_201105_01_H02]

source_name: STR - STRd

value: STR - STRd


title: Mouse_550850_PAR-POST-PRE-SUB-ProS_10Xv3 [L8TX_201029_01_A10]


title: Mouse_553676_MB - PAG-RAmb_10Xv3 [L8TX_201120_01_F09]

source_name: MB - PAG-RAmb

value: MB - PAG-RAmb

value: 54 days


title: Mouse_556114_TH_10Xv3 [L8TX_201210_01_F03]

value: 60 days


title: Mouse_551638_MB - PAG-RAmb_10Xv3 [L8TX_201112_01_D06]

value: Dark

value: 62 days


title: Mouse_551017_HIP - CA_10Xv3 [L8TX_201106_01_F03]

source_name: HIP - CA

value: HIP - CA

value: 59 days


title: Mouse_546799_PL-ILA-ORB_10Xv3 [L8TX_201015_01_E03]

value: PL-ILA-ORB


title: Mouse_550848_CNU - PAL_10Xv3 [L8TX_201106_01_D04]

value: CNU - PAL


title: Mouse_551628_MB - PAG-RAmb_10Xv3 [L8TX_201112_01_H04]

value: Light


title: Mouse_568762_PONS - Psen_10Xv3 [L8TX_210318_01_A05]

value: PONS - Psen

value: 58 days


title: Mouse_556231_MB - SC-IC_10Xv3 [L8TX_201217_01_D07]

value: MB - SC-IC

value: 64 days


title: Mouse_536273_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv3 [L8TX_200813_01_D10]

source_name: CTXsp - CLA-EP-LA-BLA-BMA-PA

value: CTXsp - CLA-EP-LA-BLA-BMA-PA

value: 65 days


title: Mouse_546810_RSP_10Xv3 [L8TX_201022_01_H06]

source_name: RSP

value: RSP

value: 69 days


title: Mouse_569504_HY LZ_10Xv3 [L8TX_210401_01_D09]

value: HY LZ


title: Mouse_553680_HIP_10Xv3 [L8TX_201204_01_C02]

source_name: HIP

value: HIP

value: 61 days


title: Mouse_546759_AI-CLA_10Xv3 [L8TX_201015_01_D02]

source_name: AI-CLA

value: AI-CLA

value: Dark

value: 62 days


title: Mouse_553675_MB - PAG-RAmb_10Xv3 [L8TX_201119_01_B08]

value: MB - PAG-RAmb

value: 55 days


title: Mouse_539463_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv3 [L8TX_200827_01_H08]

value: 59 days


title: Mouse_540566_STR - STRv_10Xv3 [L8TX_200903_01_C12]

source_name: STR - STRv

value: STR - STRv

value: Light


title: Mouse_551016_HIP - CA_10Xv3 [L8TX_201106_01_E04]

value: HIP - CA


title: Mouse_553682_HIP_10Xv3 [L8TX_201204_01_G01]


title: Mouse_561531_MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO_10Xv3 [L8TX_210128_01_G04]

source_name: MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO

value: MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO

value: 64 days


title: Mouse_551640_MB - VTA-SN_10Xv3 [L8TX_201112_01_F05]

value: MB - VTA-SN


title: Mouse_551628_PONS - Pmot-Psat post_10Xv3 [L8TX_201113_01_E06]

source_name: PONS - Pmot-Psat post

value: PONS - Pmot-Psat post


title: Mouse_556943_CB - HEM_10Xv3 [L8TX_210107_02_H11]

source_name: CB - HEM

value: CB - HEM

value: 66 days


title: Mouse_538745_HY -  MEZ-PVZ-PVR_10Xv3 [L8TX_200820_01_G03]

source_name: HY -  MEZ-PVZ-PVR

value: HY -  MEZ-PVZ-PVR

value: 57 days


title: Mouse_546799_AI-CLA_10Xv3 [L8TX_201015_01_A03]

value: AI-CLA


title: Mouse_554927_STR - LSX_10Xv3 [L8TX_201203_01_C12]

source_name: STR - LSX

value: STR - LSX

value: 58 days


title: Mouse_551016_HIP - CA_10Xv3 [L8TX_201105_01_H01]


title: Mouse_548212_RSP_10Xv3 [L8TX_201029_01_A11]

value: RSP

value: 69 days


title: Mouse_550851_PAR-POST-PRE-SUB-ProS_10Xv3 [L8TX_201029_01_E10]

value: PAR-POST-PRE-SUB-ProS

value: Dark

value: 53 days


title: Mouse_554815_HIP_10Xv3 [L8TX_201204_01_H01]

value: HIP

value: Light

value: 54 days


title: Mouse_549928_PAR-POST-PRE-SUB-ProS_10Xv3 [L8TX_201029_01_B10]


title: Mouse_553673_MB - PAG-RAmb_10Xv3 [L8TX_201119_01_F08]

value: MB - PAG-RAmb

value: 59 days


title: Mouse_554809_OLF - MOB-AOB_10Xv3 [L8TX_201203_01_D12]

source_name: OLF - MOB-AOB

value: OLF - MOB-AOB


title: Mouse_568762_MB - MRN-CUN-RN-RR-PPN-PRT-SC-IC_10Xv3 [L8TX_210318_01_F04]

source_name: MB - MRN-CUN-RN-RR-PPN-PRT-SC-IC

value: MB - MRN-CUN-RN-RR-PPN-PRT-SC-IC


title: Mouse_551630_CNU - PAL_10Xv3 [L8TX_201105_01_F01]

source_name: CNU - PAL

value: CNU - PAL


title: Mouse_546812_ACA_10Xv3 [L8TX_201016_01_G04]

source_name: ACA

value: ACA

value: 63 days


title: Mouse_557707_VISp_10Xv3 [L8TX_210107_01_C08]

source_name: VISp

value: VISp

value: 60 days


title: Mouse_546810_ENT_10Xv3 [L8TX_201023_01_B09]

source_name: ENT

value: ENT


title: Mouse_562458_AUD-TEa-PERI-ECT_10Xv3 [L8TX_210204_01_G05]

source_name: AUD-TEa-PERI-ECT

value: AUD-TEa-PERI-ECT


title: Mouse_539605_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv3 [L8TX_200827_01_E10]

source_name: CTXsp - CLA-EP-LA-BLA-BMA-PA

value: CTXsp - CLA-EP-LA-BLA-BMA-PA


title: Mouse_539606_STR - sAMY_10Xv3 [L8TX_200827_01_D09]

source_name: STR - sAMY

value: STR - sAMY

value: Dark


title: Mouse_556113_MB - SC-IC_10Xv3 [L8TX_201217_01_H06]

source_name: MB - SC-IC

value: MB - SC-IC

value: 66 days


title: Mouse_555360_SS-GU-VISC_10Xv3 [L8TX_201204_01_C01]

source_name: SS-GU-VISC

value: SS-GU-VISC

value: Light

value: 53 days


title: Mouse_551628_MB - PAG-RAmb_10Xv3 [L8TX_201112_01_G05]

source_name: MB - PAG-RAmb

value: MB - PAG-RAmb

value: 62 days


title: Mouse_546810_ENT_10Xv3 [L8TX_201023_01_D09]

value: 69 days


title: Mouse_540566_ACA_10Xv3 [L8TX_200903_01_F11]

value: ACA

value: 61 days


title: Mouse_544400_STR - STRd_10Xv3 [L8TX_200924_01_G05]

source_name: STR - STRd

value: STR - STRd

value: 58 days


title: Mouse_539606_HY -  MEZ-PVZ-PVR_10Xv3 [L8TX_200827_01_G09]

value: HY -  MEZ-PVZ-PVR

value: 59 days


title: Mouse_546759_AI-CLA_10Xv3 [L8TX_201015_01_D03]

source_name: AI-CLA

value: AI-CLA


title: Mouse_556108_CB - VERM-CBN_10Xv3 [L8TX_201217_01_B07]

source_name: CB - VERM-CBN

value: CB - VERM-CBN

value: 67 days


title: Mouse_565914_MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO_10Xv3 [L8TX_210226_01_D12]

source_name: MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO

value: MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO

value: Dark

value: 55 days


title: Mouse_546813_ENT_10Xv3 [L8TX_201022_01_G06]

value: ENT

value: Light


title: Mouse_549927_ACA_10Xv3 [L8TX_201030_01_F11]


title: Mouse_560336_MY - MYsat-MYmot ant_10Xv3 [L8TX_210114_01_B02]

source_name: MY - MYsat-MYmot ant

value: MY - MYsat-MYmot ant

value: 60 days


title: Mouse_549927_HY -  MEZ-PVZ-PVR_10Xv3 [L8TX_201029_01_G10]

source_name: HY -  MEZ-PVZ-PVR


title: Mouse_539610_STR - STRv_10Xv3 [L8TX_200903_01_G11]

source_name: STR - STRv

value: STR - STRv

value: 66 days


title: Mouse_546812_STR - STRv_10Xv3 [L8TX_201016_01_F04]

value: 63 days


title: Mouse_554811_STR - LSX_10Xv3 [L8TX_201203_01_B12]

source_name: STR - LSX

value: STR - LSX


title: Mouse_551018_PONS - Pmot-Psat ant_10Xv3 [L8TX_201113_01_E07]

source_name: PONS - Pmot-Psat ant

value: PONS - Pmot-Psat ant


title: Mouse_568464_HY LZ_10Xv3 [L8TX_210325_01_H07]

source_name: HY LZ

value: HY LZ

value: 68 days


title: Mouse_551640_HIP - CA_10Xv3 [L8TX_201112_01_G04]

source_name: HIP - CA

value: HIP - CA

value: 61 days


title: Mouse_533254_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv3 [L8TX_200730_01_G02]

value: CTXsp - CLA-EP-LA-BLA-BMA-PA


title: Mouse_551016_MB - VTA-SN_10Xv3 [L8TX_201106_01_C04]

source_name: MB - VTA-SN

value: MB - VTA-SN

value: 59 days


title: Mouse_565823_AUD-TEa-PERI-ECT_10Xv3 [L8TX_210226_01_G11]

source_name: AUD-TEa-PERI-ECT

value: AUD-TEa-PERI-ECT

value: 57 days


title: Mouse_546811_ACA_10Xv3 [L8TX_201016_01_D04]

source_name: ACA

value: ACA

value: Dark


title: Mouse_546799_AI-CLA_10Xv3 [L8TX_201015_01_F02]

value: AI-CLA

value: Light

value: 62 days


title: Mouse_550468_PONS - Pmot-Psat ant_10Xv3 [L8TX_201113_01_A07]

value: 69 days


title: Mouse_556113_MB - MRN-CUN-RN-RR-PPN-PRT_10Xv3 [L8TX_201217_01_C07]

source_name: MB - MRN-CUN-RN-RR-PPN-PRT

value: MB - MRN-CUN-RN-RR-PPN-PRT

value: 66 days


title: Mouse_556114_HY LZ_10Xv3 [L8TX_201210_01_D04]

value: HY LZ

value: 60 days


title: Mouse_540565_STR - sAMY_10Xv3 [L8TX_200903_01_B12]

source_name: STR - sAMY

value: STR - sAMY

value: 54 days


title: Mouse_550848_CNU - PAL_10Xv3 [L8TX_201106_01_D03]

source_name: CNU - PAL

value: CNU - PAL


title: Mouse_550851_PAR-POST-PRE-SUB-ProS_10Xv3 [L8TX_201029_01_D10]

source_name: PAR-POST-PRE-SUB-ProS

value: PAR-POST-PRE-SUB-ProS

value: 53 days


title: Mouse_560336_MY - MYsat-MYmot post_10Xv3 [L8TX_210114_01_C02]

source_name: MY - MYsat-MYmot post

value: MY - MYsat-MYmot post


title: Mouse_551017_MB - VTA-SN_10Xv3 [L8TX_201106_01_H03]

value: MB - VTA-SN

value: 59 days


title: Mouse_565913_AUD-TEa-PERI-ECT_10Xv3 [L8TX_210225_01_D11]

value: AUD-TEa-PERI-ECT

value: Dark


title: Mouse_546813_ENT_10Xv3 [L8TX_201022_01_C06]

source_name: ENT

value: ENT

value: Light


title: Mouse_551639_HY -  MEZ-PVZ-PVR_10Xv3 [L8TX_201105_01_B02]

value: HY -  MEZ-PVZ-PVR


title: Mouse_551629_MB - VTA-SN_10Xv3 [L8TX_201112_01_H05]

value: 61 days


title: Mouse_547057_ENT_10Xv3 [L8TX_201022_01_F07]

value: 69 days


title: Mouse_546812_ACA_10Xv3 [L8TX_201016_01_C04]

value: ACA

value: 63 days


title: Mouse_554920_MB - SC-IC_10Xv3 [L8TX_201210_01_B04]

source_name: MB - SC-IC

value: MB - SC-IC

value: 67 days


title: Mouse_553673_PONS - Pmot-Psat ant_10Xv3 [L8TX_201119_01_C08]

value: PONS - Pmot-Psat ant


title: Mouse_546763_PL-ILA-ORB_10Xv3 [L8TX_201008_01_G10]

source_name: PL-ILA-ORB

value: PL-ILA-ORB

value: 55 days


title: Mouse_548212_ENT_10Xv3 [L8TX_201029_01_C10]


title: Mouse_546813_RSP_10Xv3 [L8TX_201022_01_F06]

source_name: RSP

value: RSP


title: Mouse_553680_VIS-PTLp_10Xv3 [L8TX_201204_01_E01]

source_name: VIS-PTLp

value: VIS-PTLp


title: Mouse_550849_PAR-POST-PRE-SUB-ProS_10Xv3 [L8TX_201029_01_F10]

value: PAR-POST-PRE-SUB-ProS

value: 53 days


title: Mouse_554815_VIS-PTLp_10Xv3 [L8TX_201204_01_A02]

value: 54 days


title: Mouse_551630_STR - STRd_10Xv3 [L8TX_201105_01_E01]

source_name: STR - STRd

value: STR - STRd

value: Dark


title: Mouse_557213_CB - HEM_10Xv3 [L8TX_201217_01_G07]

source_name: CB - HEM

value: CB - HEM

value: 58 days


title: Mouse_546810_RSP_10Xv3 [L8TX_201023_01_A09]

value: 69 days


title: Mouse_554809_STR - LSX_10Xv3 [L8TX_201203_01_F12]

source_name: STR - LSX

value: STR - LSX

value: 59 days


title: Mouse_561533_OLF - AON-TT-DP-PIR-COA-NLOT-PAA-TR_10Xv3 [L8TX_210121_01_F02]

source_name: OLF - AON-TT-DP-PIR-COA-NLOT-PAA-TR

value: OLF - AON-TT-DP-PIR-COA-NLOT-PAA-TR

value: 57 days


title: Mouse_573619_MY - MYsat-MYmot_10Xv3 [L8TX_210422_01_E02]

source_name: MY - MYsat-MYmot

value: MY - MYsat-MYmot


title: Mouse_560333_OLF - AON-TT-DP-PIR-COA-NLOT-PAA-TR_10Xv3 [L8TX_210114_01_A01]

value: Light


title: Mouse_569504_TH_10Xv3 [L8TX_210401_01_E09]

source_name: TH

value: TH

value: 65 days


title: Mouse_549928_PAR-POST-PRE-SUB-ProS_10Xv3 [L8TX_201029_01_H10]


title: Mouse_556108_CB - HEM_10Xv3 [L8TX_201217_01_A07]

value: 67 days


title: Mouse_621073_MB-PONS - DR-PPN-SOC-V_10Xv3 [L8TX_220414_01_C07]

source_name: MB-PONS - DR-PPN-SOC-V

value: MB-PONS - DR-PPN-SOC-V


title: Mouse_553670_SS-GU-VISC_10Xv3 [L8TX_201204_01_D01]

source_name: SS-GU-VISC

value: SS-GU-VISC

value: 61 days


title: Mouse_537272_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv3 [L8TX_200820_01_E02]

source_name: CTXsp - CLA-EP-LA-BLA-BMA-PA

value: CTXsp - CLA-EP-LA-BLA-BMA-PA


title: Mouse_538745_STR - sAMY_10Xv3 [L8TX_200820_01_F02]

source_name: STR - sAMY

value: STR - sAMY


title: Mouse_553682_VIS-PTLp_10Xv3 [L8TX_201204_01_F01]

value: VIS-PTLp

value: Dark


title: Mouse_550468_PONS - Pmot-Psat ant_10Xv3 [L8TX_201113_01_F06]

source_name: PONS - Pmot-Psat ant

value: PONS - Pmot-Psat ant

value: 69 days


title: Mouse_551630_CNU - PAL_10Xv3 [L8TX_201106_01_B03]

source_name: CNU - PAL

value: CNU - PAL

value: 54 days


title: Mouse_553673_PONS - Pmot-Psat ant_10Xv3 [L8TX_201119_01_H08]

value: 59 days


title: Mouse_561537_OLF - AON-TT-DP-PIR-COA-NLOT-PAA-TR_10Xv3 [L8TX_210121_01_G02]

value: OLF - AON-TT-DP-PIR-COA-NLOT-PAA-TR

value: 58 days


title: Mouse_537272_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv3 [L8TX_200820_01_E08]

value: Light


title: Mouse_553669_MO-FRP_10Xv3 [L8TX_201204_01_B01]

source_name: MO-FRP

value: MO-FRP

value: 62 days


title: Mouse_562809_MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO_10Xv3 [L8TX_210128_01_H04]

source_name: MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO

value: MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO

value: 53 days


title: Mouse_544400_CNU - PAL_10Xv3 [L8TX_200924_01_F05]


title: Mouse_551639_ACA_10Xv3 [L8TX_201105_01_A01]

source_name: ACA

value: ACA


title: Mouse_536274_HY -  MEZ-PVZ-PVR_10Xv3 [L8TX_200813_01_G10]

source_name: HY -  MEZ-PVZ-PVR

value: HY -  MEZ-PVZ-PVR

value: 66 days


title: Mouse_553676_MB - PAG-RAmb_10Xv3 [L8TX_201120_01_B10]

source_name: MB - PAG-RAmb

value: MB - PAG-RAmb


title: Mouse_553676_PONS - Pmot-Psat post_10Xv3 [L8TX_201119_01_D08]

source_name: PONS - Pmot-Psat post

value: PONS - Pmot-Psat post


title: Mouse_562810_AUD-TEa-PERI-ECT_10Xv3 [L8TX_210204_01_D05]

source_name: AUD-TEa-PERI-ECT

value: AUD-TEa-PERI-ECT

value: Dark


title: Mouse_538745_STR - sAMY_10Xv3 [L8TX_200820_01_F03]

value: STR - sAMY

value: 57 days


title: Mouse_551629_MB - VTA-SN_10Xv3 [L8TX_201112_01_A06]

source_name: MB - VTA-SN

value: MB - VTA-SN

value: 61 days


title: Mouse_553676_PONS - Pmot-Psat post_10Xv3 [L8TX_201119_01_A08]

value: 54 days


title: Mouse_554311_MOs-FRP_10Xv3 [L8TX_201203_01_H10]

source_name: MOs-FRP

value: MOs-FRP

value: 59 days


title: Mouse_556846_VISp_10Xv3 [L8TX_210107_01_F09]

source_name: VISp

value: VISp

value: Light

value: 68 days


title: Mouse_553669_SS-GU-VISC_10Xv3 [L8TX_201204_01_B02]

value: SS-GU-VISC

value: 62 days


title: Mouse_550848_STR - STRd_10Xv3 [L8TX_201105_01_A02]

source_name: STR - STRd

value: STR - STRd


title: Mouse_539610_ACA_10Xv3 [L8TX_200903_01_E01]

value: ACA

value: 66 days


title: Mouse_539463_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv3 [L8TX_200827_01_E09]

value: CTXsp - CLA-EP-LA-BLA-BMA-PA


title: Mouse_554811_OLF - MOB-AOB_10Xv3 [L8TX_201203_01_A12]

source_name: OLF - MOB-AOB

value: OLF - MOB-AOB


title: Mouse_555358_STR - LSX_10Xv3 [L8TX_201203_01_E11]

source_name: STR - LSX

value: STR - LSX

value: Dark

value: 53 days


title: Mouse_532618_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv3 [L8TX_200723_01_F09]

source_name: CTXsp - CLA-EP-LA-BLA-BMA-PA

value: 65 days


title: Mouse_547057_RSP_10Xv3 [L8TX_201022_01_B07]

source_name: RSP

value: RSP

value: 69 days


title: Mouse_548212_RSP_10Xv3 [L8TX_201030_01_A12]


title: Mouse_560335_OLF - AON-TT-DP-PIR-COA-NLOT-PAA-TR_10Xv3 [L8TX_210114_01_C01]

source_name: OLF - AON-TT-DP-PIR-COA-NLOT-PAA-TR

value: OLF - AON-TT-DP-PIR-COA-NLOT-PAA-TR

value: 60 days


title: Mouse_547057_RSP_10Xv3 [L8TX_201023_01_G09]


title: Mouse_555360_MO-FRP_10Xv3 [L8TX_201203_01_A11]

value: MO-FRP

value: Light


title: Mouse_551638_MB - PAG-RAmb_10Xv3 [L8TX_201112_01_B05]

value: MB - PAG-RAmb


title: Mouse_555358_OLF - MOB-AOB_10Xv3 [L8TX_201203_01_G11]


title: Mouse_621073_MB-PONS - DR-PPN-SOC-V_10Xv3 [L8TX_220414_01_B07]

source_name: MB-PONS - DR-PPN-SOC-V

value: MB-PONS - DR-PPN-SOC-V

value: 58 days


title: Mouse_556231_MB - MRN-CUN-RN-RR-PPN-PRT_10Xv3 [L8TX_201217_01_E07]

source_name: MB - MRN-CUN-RN-RR-PPN-PRT

value: MB - MRN-CUN-RN-RR-PPN-PRT

value: 64 days


title: Mouse_572423_MB - MRN-CUN-RN-RR-PPN-PRT-SC-IC_10Xv3 [L8TX_210422_01_A02]

source_name: MB - MRN-CUN-RN-RR-PPN-PRT-SC-IC

value: MB - MRN-CUN-RN-RR-PPN-PRT-SC-IC


title: Mouse_553670_MO-FRP_10Xv3 [L8TX_201204_01_A01]

source_name: MO-FRP

value: 61 days


title: Mouse_621471_PL-ILA-ORB_10Xv3 [L8TX_220421_01_G07]

source_name: PL-ILA-ORB

value: PL-ILA-ORB

value: 66 days


title: Mouse_613581_MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO_10Xv3 [L8TX_220210_01_A04]

source_name: MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO

value: MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO

value: 57 days


title: Mouse_608857_PONS - Pmot-Psat ant_10Xv3 [L8TX_220120_01_C02]

source_name: PONS - Pmot-Psat ant

value: PONS - Pmot-Psat ant

value: 68 days


title: Mouse_608855_PONS - Pmot-Psat post_10Xv3 [L8TX_220120_01_A02]

source_name: PONS - Pmot-Psat post

value: PONS - Pmot-Psat post

value: 69 days


title: Mouse_608856_MY - CN-DCN-ECU-NTS-SPVC-SPVI-SPVO_10Xv3 [L8TX_220120_01_E02]

value: 70 days


title: Mouse_608857_PONS - Pmot-Psat post_10Xv3 [L8TX_220120_01_B02]

value: Light


title: Mouse_608855_PONS - Pmot-Psat ant_10Xv3 [L8TX_220120_01_D02]


title: Mouse_554927_OLF - MOB-AOB_10Xv3 [L8TX_201203_01_E12]

value: OLF - MOB-AOB


title: Mouse_606117_MY - MYsat-MYmot post_10Xv3 [L8TX_220106_03_A10]

source_name: MY - MYsat-MYmot post

value: MY - MYsat-MYmot post

value: 60 days


title: Mouse_606117_MY - MYsat-MYmot ant_10Xv3 [L8TX_220106_03_H09]

source_name: MY - MYsat-MYmot ant

value: MY - MYsat-MYmot ant


title: Mouse_606116_MY - MYsat-MYmot ant_10Xv3 [L8TX_220106_03_B09]

value: 62 days


title: Mouse_606116_MY - MYsat-MYmot post_10Xv3 [L8TX_220106_03_E09]


title: Mouse_606115_MB - PAG-RAmb_10Xv3 [L8TX_220106_03_F09]

source_name: MB - PAG-RAmb

value: MB - PAG-RAmb


title: Mouse_606114_PONS - Psen_10Xv3 [L8TX_211216_01_E04]

source_name: PONS - Psen

value: PONS - Psen

value: 55 days


title: Mouse_604611_MB - VTA-SN_10Xv3 [L8TX_211216_01_D04]

source_name: MB - VTA-SN

value: MB - VTA-SN

value: 64 days


title: Mouse_619870_HY -  MEZ-PVZ-PVR_10Xv3 [L8TX_220407_01_E06]

source_name: HY -  MEZ-PVZ-PVR

value: HY -  MEZ-PVZ-PVR


title: Mouse_601663_MB - MRN-CUN-RN-RR-PPN-PRT_10Xv3 [L8TX_211118_01_G10]

value: MB - MRN-CUN-RN-RR-PPN-PRT


title: Mouse_606114_MB - MRN-CUN-RN-RR-PPN-PRT_10Xv3 [L8TX_211216_01_C04]


title: Mouse_601663_PONS - Psen_10Xv3 [L8TX_211118_01_H10]


title: Mouse_619870_AI-CLA_10Xv3 [L8TX_220407_01_D06]

source_name: AI-CLA

value: AI-CLA


title: Mouse_566076_HY - HYm2_10Xv3 [L8TX_210304_01_F01]

source_name: HY - HYm2

value: HY - HYm2


title: Mouse_563792_OLF - MOB-AOB_10Xv3 [L8TX_210204_01_A06]

source_name: OLF - MOB-AOB

value: 53 days


title: Mouse_563792_OLF - MOB-AOB_10Xv3 [L8TX_210204_01_H05]


title: Mouse_556846_VISp_10Xv3 [L8TX_210107_01_G09]

source_name: VISp

value: VISp

value: 68 days


title: Mouse_558836_OLF - MOB-AOB_10Xv3 [L8TX_210107_02_G10]

value: OLF - MOB-AOB

value: Light

value: 56 days


title: Mouse_557707_VISp_10Xv3 [L8TX_210107_01_H08]

value: 60 days


title: Mouse_618176_HY -  MEZ-PVZ-PVR_10Xv3 [L8TX_220331_01_D05]

value: 65 days


title: Mouse_558836_OLF - MOB-AOB_10Xv3 [L8TX_210107_02_H10]


title: Mouse_547122_HY - HYpm_10Xv3 [L8TX_201022_01_D06]

source_name: HY - HYpm

value: HY - HYpm

value: 67 days


title: Mouse_606115_MB - VTA-SN_10Xv3 [L8TX_220106_03_B10]

value: 61 days


title: Mouse_546895_HY - HYa1_10Xv3 [L8TX_201015_01_B03]

source_name: HY - HYa1

value: HY - HYa1

value: 62 days


title: Mouse_546892_HY - HYml_10Xv3 [L8TX_201016_01_A04]

source_name: HY - HYml

value: HY - HYml


title: Mouse_546895_HY - HYm2_10Xv3 [L8TX_201015_01_E02]


title: Mouse_546892_HY - HYmm_10Xv3 [L8TX_201016_01_B04]

source_name: HY - HYmm

value: HY - HYmm


title: Mouse_540230_HY - HYpm_10Xv3 [L8TX_200903_01_A12]

value: 64 days


title: Mouse_546895_HY - HYa2_10Xv3 [L8TX_201016_01_E04]

source_name: HY - HYa2

value: HY - HYa2


title: Mouse_546758_TH - AD-AV-AM-IAD-LD_10Xv3 [L8TX_201008_01_E11]

source_name: TH - AD-AV-AM-IAD-LD

value: TH - AD-AV-AM-IAD-LD


title: Mouse_540230_HY - HYa1_10Xv3 [L8TX_200903_01_D12]


title: Mouse_604611_MB - PAG-RAmb_10Xv3 [L8TX_211216_01_D01]

value: MB - PAG-RAmb


title: Mouse_540230_HY - HYa2_10Xv3 [L8TX_200903_01_H11]


title: Mouse_540565_STR - sAMY_10Xv3 [L8TX_200827_01_A09]

source_name: STR - sAMY

value: STR - sAMY

value: 54 days


title: Mouse_539609_HY - HYmm_10Xv3 [L8TX_200903_01_C01]

value: Light


title: Mouse_539606_STR - sAMY_10Xv3 [L8TX_200827_01_C09]

value: Dark

value: 59 days


title: Mouse_539609_HY - HYml_10Xv3 [L8TX_200902_01_B11]

value: 65 days


title: Mouse_537272_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv3 [L8TX_200820_01_D01]

source_name: CTXsp - CLA-EP-LA-BLA-BMA-PA

value: CTXsp - CLA-EP-LA-BLA-BMA-PA


title: Mouse_533388_TH - PF-SPA-SPFm-VPMpc-VPLpc-RT_10Xv3 [L8TX_200730_01_D03]

source_name: TH - PF-SPA-SPFm-VPMpc-VPLpc-RT

value: TH - PF-SPA-SPFm-VPMpc-VPLpc-RT

value: 68 days


title: Mouse_538745_STR - sAMY_10Xv3 [L8TX_200820_01_H01]

value: 57 days


title: Mouse_550468_HY - HYpl_10Xv3 [L8TX_201113_01_H06]

source_name: HY - HYpl

value: HY - HYpl

value: 69 days


title: Mouse_536274_STR - sAMY_10Xv3 [L8TX_200813_01_F10]

value: 66 days


title: Mouse_532599_TH - MH-LH-LP_10Xv3 [L8TX_200723_01_A12]

source_name: TH - MH-LH-LP

value: TH - MH-LH-LP


title: Mouse_532619_TH - MH-LH-LP_10Xv3 [L8TX_200723_01_H09]


title: Mouse_533254_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv3 [L8TX_200730_01_H12]


title: Mouse_532618_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv3 [L8TX_200723_01_G09]


title: Mouse_532598_TH - MG-SPFp-PP-POL-SGN-PoT-PIL_10Xv3 [L8TX_200716_01_H06]

source_name: TH - MG-SPFp-PP-POL-SGN-PoT-PIL

value: TH - MG-SPFp-PP-POL-SGN-PoT-PIL


title: Mouse_532619_TH - PF-SPA-SPFm-VPMpc-VPLpc-RT_10Xv3 [L8TX_200723_01_A10]


title: Mouse_547122_HY - HYpl_10Xv3 [L8TX_201023_01_E09]

value: 67 days


title: Mouse_532598_TH - LGd-IGL-LGv_10Xv3 [L8TX_200716_01_C07]

source_name: TH - LGd-IGL-LGv

value: TH - LGd-IGL-LGv


title: Mouse_531955_TH - LGd-IGL-LGv_10Xv3 [L8TX_200716_01_A07]

value: 63 days


title: Mouse_531953_TH - RE-RH-CM-IAM-SMT-PR-Xi_10Xv3 [L8TX_200716_01_B06]

source_name: TH - RE-RH-CM-IAM-SMT-PR-Xi

value: TH - RE-RH-CM-IAM-SMT-PR-Xi

value: 62 days


title: Mouse_531164_TH - PVT-PT_10Xv3 [L8TX_200716_01_H08]

source_name: TH - PVT-PT

value: TH - PVT-PT

value: Light


title: Mouse_531955_TH - MG-SPFp-PP-POL-SGN-PoT-PIL_10Xv3 [L8TX_200716_01_B07]


title: Mouse_531164_TH - PO-Eth_10Xv3 [L8TX_200716_01_G08]

source_name: TH - PO-Eth

value: TH - PO-Eth


title: Mouse_531953_TH - AD-AV-AM-IAD-LD_10Xv3 [L8TX_200716_01_E08]

value: TH - AD-AV-AM-IAD-LD


title: Mouse_531163_TH - PO-Eth_10Xv3 [L8TX_200716_01_F08]


title: Mouse_544399_HY - HYpl_10Xv3 [L8TX_200924_01_B05]


title: Mouse_529474_TH - VAL-VPM-VPL-VM_10Xv3 [L8TX_200702_01_H01]

source_name: TH - VAL-VPM-VPL-VM

value: TH - VAL-VPM-VPL-VM


title: Mouse_531154_MY - MYsat-MYmot-vent post_10Xv3 [L8TX_200709_01_A05]

source_name: MY - MYsat-MYmot-vent post

value: MY - MYsat-MYmot-vent post


title: Mouse_539605_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv3 [L8TX_200827_01_G08]

value: CTXsp - CLA-EP-LA-BLA-BMA-PA

value: 59 days


title: Mouse_529474_TH - MD-IMD-PCN-CL_10Xv3 [L8TX_200702_01_G01]

source_name: TH - MD-IMD-PCN-CL

value: TH - MD-IMD-PCN-CL


title: Mouse_536270_TH - PVT-PT_10Xv3 [L8TX_200810_01_A07]


title: Mouse_529273_HIP_10Xv3 [L8TX_200625_01_E09]

source_name: HIP

value: HIP

value: 66 days


title: Mouse_529273_HIP_10Xv3 [L8TX_200625_01_F09]


title: Mouse_529271_HIP_10Xv3 [L8TX_200625_01_D09]


title: Mouse_527433_TH - VAL-VPM-VPL-VM_10Xv3 [L8TX_200618_01_A07]


title: Mouse_527433_TH - MD-IMD-PCN-CL_10Xv3 [L8TX_200618_01_A06]


title: Mouse_511458_MY - MYsat-Mymot-vent ant_10Xv3 [L8TX_200310_01_B01]

source_name: MY - MYsat-Mymot-vent ant

value: MY - MYsat-Mymot-vent ant

value: 68 days


title: Mouse_511456_MY - AP-DCO-VCO-DCN-ECU-NTS_10Xv3 [L8TX_200227_01_C10]

source_name: MY - AP-DCO-VCO-DCN-ECU-NTS

value: MY - AP-DCO-VCO-DCN-ECU-NTS

value: 54 days


title: Mouse_511243_MY - VNC-PHY-DMX-XII_10Xv3 [L8TX_200306_01_A01]

source_name: MY - VNC-PHY-DMX-XII

value: MY - VNC-PHY-DMX-XII

value: 64 days


title: Mouse_511241_MY - SPVC-SPVI-SPVO_10Xv3 [L8TX_200306_01_G12]

source_name: MY - SPVC-SPVI-SPVO

value: MY - SPVC-SPVI-SPVO

value: 62 days


title: Mouse_511242_MY - AP-DCO-VCO-DCN-ECU-NTS_10Xv3 [L8TX_200306_01_F12]

value: Light


title: Mouse_511242_MY - AP-DCO-VCO-DCN-ECU-NTS_10Xv3 [L8TX_200306_01_H12]


title: Mouse_510547_CB - VERM_10Xv3 [L8TX_200227_01_H10]

source_name: CB - VERM

value: CB - VERM


title: Mouse_510547_CB - VERM_10Xv3 [L8TX_200227_01_E10]


title: Mouse_531952_TH - RE-RH-CM-IAM-SMT-PR-Xi_10Xv3 [L8TX_200709_01_D03]

value: TH - RE-RH-CM-IAM-SMT-PR-Xi

value: 56 days


title: Mouse_510547_CB - VERM_10Xv3 [L8TX_200227_01_D10]


title: Mouse_510544_CB - VERM_10Xv3 [L8TX_200227_01_B11]


title: Mouse_510544_CB - VERM_10Xv3 [L8TX_200227_01_A11]


title: Mouse_510398_MY - MYsat-MYmot-vent post_10Xv3 [L8TX_200220_01_B09]

value: MY - MYsat-MYmot-vent post


title: Mouse_510227_CB - CBN_10Xv3 [L8TX_200220_01_G08]

source_name: CB - CBN

value: CB - CBN


title: Mouse_510544_CB - VERM_10Xv3 [L8TX_200227_01_D11]


title: Mouse_510227_CB - CBN_10Xv3 [L8TX_200220_01_H08]


title: Mouse_510547_CB - VERM_10Xv3 [L8TX_200227_01_G10]


title: Mouse_511456_MY - AP-DCO-VCO-DCN-ECU-NTS_10Xv3 [L8TX_200227_01_F10]


title: Mouse_508184_MY - SPVC-SPVI-SPVO_10Xv3 [L8TX_200213_01_G06]

value: 63 days


title: Mouse_510225_MY - MYsat-Mymot-vent ant_10Xv3 [L8TX_200220_01_A09]

value: 58 days


title: Mouse_508983_MY - VNC-PHY-DMX-XII_10Xv3 [L8TX_200213_01_D07]

value: 60 days


title: Mouse_510544_CB - VERM_10Xv3 [L8TX_200227_01_C11]


title: Mouse_507773_CB - HEM_10Xv3 [L8TX_200206_01_G03]

source_name: CB - HEM

value: CB - HEM

value: 61 days


title: Mouse_507773_CB - HEM_10Xv3 [L8TX_200206_01_F03]


title: Mouse_507771_CB - HEM_10Xv3 [L8TX_200206_01_E03]


title: Mouse_507771_CB - HEM_10Xv3 [L8TX_200206_01_D03]


title: Mouse_507771_CB - HEM_10Xv3 [L8TX_200206_01_B03]


title: Mouse_507771_CB - HEM_10Xv3 [L8TX_200206_01_C03]


title: Mouse_506933_CB - CBN_10Xv3 [L8TX_200206_01_A03]

value: 65 days


title: Mouse_506920_MB - PAG-RAmb_10Xv3 [L8TX_200130_01_D01]

source_name: MB - PAG-RAmb

value: MB - PAG-RAmb

value: 59 days


title: Mouse_506920_MB - PAG-RAmb_10Xv3 [L8TX_200130_01_G01]


title: Mouse_505950_MB - MRN-CUN-RN-RR-PN_10Xv3 [L8TX_200130_01_B02]

source_name: MB - MRN-CUN-RN-RR-PN

value: MB - MRN-CUN-RN-RR-PN

value: 66 days


title: Mouse_505064_MB - MRN-CUN-RN-RR-PPN-NB-SAG-PBG_10Xv3 [L8TX_200130_01_E02]

source_name: MB - MRN-CUN-RN-RR-PPN-NB-SAG-PBG

value: MB - MRN-CUN-RN-RR-PPN-NB-SAG-PBG

value: 70 days


title: Mouse_505064_MB - MRN-CUN-RN-RR-PPN-NB-SAG-PBG_10Xv3 [L8TX_200130_01_D02]

value: Light


title: Mouse_506933_CB - CBN_10Xv3 [L8TX_200206_01_H02]


title: Mouse_506920_MB - PAG-RAmb_10Xv3 [L8TX_200130_01_F01]


title: Mouse_504988_MB - PRT_10Xv3 [L8TX_200122_01_E12]

source_name: MB - PRT

value: MB - PRT


title: Mouse_504535_MB - VTA-SN_10Xv3 [L8TX_200122_01_F12]

source_name: MB - VTA-SN

value: MB - VTA-SN

value: 67 days


title: Mouse_504244_PONS - Psen_10Xv3 [L8TX_200114_01_B12]

source_name: PONS - Psen

value: PONS - Psen

value: 62 days


title: Mouse_505950_MB - MRN-CUN-RN-RR-PN_10Xv3 [L8TX_200130_01_G02]


title: Mouse_504230_MB - VTA-SN_10Xv3 [L8TX_200114_01_C12]

value: 63 days


title: Mouse_500199_MOp_10Xv3 [L8TX_200106_01_G07]

source_name: MOp

value: MOp


title: Mouse_499311_CB - CBN_10Xv3 [L8TX_191217_01_D07]

value: CB - CBN


title: Mouse_507773_CB - HEM_10Xv3 [L8TX_200206_01_A04]

value: CB - HEM

value: 61 days


title: Mouse_507773_CB - HEM_10Xv3 [L8TX_200206_01_H03]


title: Mouse_499298_MB - PAG-RAmb_10Xv3 [L8TX_191217_01_H04]

value: MB - PAG-RAmb


title: Mouse_499298_MB - PAG-RAmb_10Xv3 [L8TX_191217_01_B05]


title: Mouse_499298_MB - PAG-RAmb_10Xv3 [L8TX_191217_01_A05]


title: Mouse_499311_CB - CBN_10Xv3 [L8TX_191217_01_E07]


title: Mouse_499296_CB - CBN_10Xv3 [L8TX_191217_01_H06]

value: 59 days


title: Mouse_499296_CB - CBN_10Xv3 [L8TX_191217_01_G06]


title: Mouse_499295_CB - HEM_10Xv3 [L8TX_191217_01_E06]


title: Mouse_499295_CB - HEM_10Xv3 [L8TX_191217_01_F06]


title: Mouse_499295_CB - HEM_10Xv3 [L8TX_191217_01_D06]


title: Mouse_498912_CB - VERM_10Xv3 [L8TX_191217_01_G05]

value: CB - VERM

value: 54 days


title: Mouse_499295_CB - HEM_10Xv3 [L8TX_191217_01_C06]


title: Mouse_498912_CB - VERM_10Xv3 [L8TX_191217_01_A06]


title: Mouse_498912_CB - VERM_10Xv3 [L8TX_191217_01_B06]


title: Mouse_498911_MY - MYsat-MYmot-vent post_10Xv3 [L8TX_191217_01_F05]

source_name: MY - MYsat-MYmot-vent post

value: MY - MYsat-MYmot-vent post


title: Mouse_498912_CB - VERM_10Xv3 [L8TX_191217_01_H05]


title: Mouse_504984_MB - PRT_10Xv3 [L8TX_200122_01_G12]

value: 66 days


title: Mouse_498338_MOp_10Xv3 [L8TX_191126_01_C02]

value: Light

value: 53 days


title: Mouse_500199_MOp_10Xv3 [L8TX_200106_01_H07]


title: Mouse_494814_CB - HEM_10Xv3 [L8TX_191119_01_H11]


title: Mouse_494814_CB - HEM_10Xv3 [L8TX_191119_01_E11]


title: Mouse_494814_CB - HEM_10Xv3 [L8TX_191119_01_F11]


title: Mouse_500027_PONS - Pmot-Psat ant_10Xv3 [L8TX_200106_01_C08]

source_name: PONS - Pmot-Psat ant

value: PONS - Pmot-Psat ant


title: Mouse_498338_MOp_10Xv3 [L8TX_191126_01_F01]


title: Mouse_494814_CB - HEM_10Xv3 [L8TX_191119_01_G11]


title: Mouse_494813_MY - AP-DCO-VCO-DCN-ECU-NTS_10Xv3 [L8TX_191119_01_D11]

value: MY - AP-DCO-VCO-DCN-ECU-NTS


title: Mouse_494810_MY - MYsat-Mymot-vent ant_10Xv3 [L8TX_191119_01_A11]

value: MY - MYsat-Mymot-vent ant


title: Mouse_494629_MY - MYsat-MYmot-vent post_10Xv3 [L8TX_191119_01_A12]

value: 64 days


title: Mouse_493660_MY - SPVC-SPVI-SPVO_10Xv3 [L8TX_191029_01_C07]

value: MY - SPVC-SPVI-SPVO

value: 55 days


title: Mouse_493659_CB - VERM_10Xv3 [L8TX_191029_01_E08]


title: Mouse_494628_MY - AP-DCO-VCO-DCN-ECU-NTS_10Xv3 [L8TX_191105_01_G09]

value: 56 days


title: Mouse_494628_MY - AP-DCO-VCO-DCN-ECU-NTS_10Xv3 [L8TX_191105_01_F09]


title: Mouse_494813_MY - AP-DCO-VCO-DCN-ECU-NTS_10Xv3 [L8TX_191119_01_C11]

value: 62 days


title: Mouse_494813_MY - AP-DCO-VCO-DCN-ECU-NTS_10Xv3 [L8TX_191119_01_B11]


title: Mouse_493659_CB - VERM_10Xv3 [L8TX_191029_01_D08]


title: Mouse_493657_MY - VNC-PHY-DMX-XII_10Xv3 [L8TX_191029_01_G07]

value: MY - VNC-PHY-DMX-XII


title: Mouse_493659_CB - VERM_10Xv3 [L8TX_191029_01_C08]


title: Mouse_493659_CB - VERM_10Xv3 [L8TX_191029_01_F08]


title: Mouse_492080_PONS - Pmot-Psat post_10Xv3 [L8TX_191015_01_E06]

source_name: PONS - Pmot-Psat post

value: PONS - Pmot-Psat post


title: Mouse_490936_PONS - Pmot-Psat post_10Xv3 [L8TX_191015_01_D06]


title: Mouse_494627_MY - VNC-PHY-DMX-XII_10Xv3 [L8TX_191105_01_E09]


title: Mouse_489429_PONS - Pmot-Psat ant_10Xv3 [L8TX_191003_01_D04]


title: Mouse_483935_PONS - Pmot-Psat ant_10Xv3 [L8TX_190917_01_B03]

value: 69 days


title: Mouse_482568_MB - PAG-RAmb_10Xv3 [L8TX_190822_01_H10]

value: MB - PAG-RAmb


title: Mouse_482568_MB - PAG-RAmb_10Xv3 [L8TX_190822_01_G10]


title: Mouse_482568_MB - PAG-RAmb_10Xv3 [L8TX_190822_01_A11]


title: Mouse_482455_MB - SC_10Xv3 [L8TX_190903_01_C01]

source_name: MB - SC

value: MB - SC


title: Mouse_482455_MB - SC_10Xv3 [L8TX_190903_01_H01]


title: Mouse_482455_MB - SC_10Xv3 [L8TX_190903_01_G01]


title: Mouse_482455_MB - SC_10Xv3 [L8TX_190903_01_D01]


title: Mouse_482455_MB - SC_10Xv3 [L8TX_190903_01_E01]


title: Mouse_482455_MB - SC_10Xv3 [L8TX_190903_01_F01]


title: Mouse_482452_PONS - Psen_10Xv3 [L8TX_190903_01_E02]

value: PONS - Psen

value: 63 days


title: Mouse_482451_MB - MRN-CUN-RN-RR-PPN-NB-SAG-PBG_10Xv3 [L8TX_190903_01_C02]

value: MB - MRN-CUN-RN-RR-PPN-NB-SAG-PBG

value: Light


title: Mouse_482451_MB - MRN-CUN-RN-RR-PPN-NB-SAG-PBG_10Xv3 [L8TX_190903_01_D02]


title: Mouse_480185_MB - MRN-CUN-RN-RR-PPN-NB-SAG-PBG_10Xv3 [L8TX_190822_01_C12]

value: 59 days


title: Mouse_481078_MB - PRT_10Xv3 [L8TX_190822_01_B01]

value: MB - PRT


title: Mouse_480184_MB - IC_10Xv3 [L8TX_190822_01_A01]

source_name: MB - IC

value: MB - IC


title: Mouse_480185_MB - MRN-CUN-RN-RR-PPN-NB-SAG-PBG_10Xv3 [L8TX_190822_01_B12]


title: Mouse_492874_MY - MYsat-Mymot-vent ant_10Xv3 [L8TX_191022_01_F06]

source_name: MY - MYsat-Mymot-vent ant

value: MY - MYsat-Mymot-vent ant

value: 53 days


title: Mouse_480184_MB - IC_10Xv3 [L8TX_190822_01_A12]


title: Mouse_492870_MY - SPVC-SPVI-SPVO_10Xv3 [L8TX_191022_01_G06]

source_name: MY - SPVC-SPVI-SPVO

value: MY - SPVC-SPVI-SPVO


title: Mouse_480180_MB - IC_10Xv3 [L8TX_190822_01_G12]


title: Mouse_480180_MB - IC_10Xv3 [L8TX_190822_01_F12]


title: Mouse_480180_MB - IC_10Xv3 [L8TX_190822_01_H12]


title: Mouse_477960_MB - PRT_10Xv3 [L8TX_190806_01_E09]

value: 56 days


title: Mouse_473981_MB - PAG-RAmb_10Xv3 [L8TX_190725_01_D09]


title: Mouse_483937_PONS - Psen_10Xv3 [L8TX_190917_01_C03]


title: Mouse_473981_MB - PAG-RAmb_10Xv3 [L8TX_190725_01_B09]


title: Mouse_473981_MB - PAG-RAmb_10Xv3 [L8TX_190725_01_A09]


title: Mouse_473981_MB - PAG-RAmb_10Xv3 [L8TX_190725_01_C09]


title: Mouse_473980_MB - SC_10Xv3 [L8TX_190725_01_G08]


title: Mouse_473980_MB - SC_10Xv3 [L8TX_190725_01_H08]


title: Mouse_473980_MB - SC_10Xv3 [L8TX_190725_01_E08]


title: Mouse_473085_STR - LSX_10Xv3 [L8TX_190725_01_B08]

source_name: STR - LSX

value: STR - LSX

value: 65 days


title: Mouse_473085_STR - LSX_10Xv3 [L8TX_190725_01_C08]


title: Mouse_473084_STR - STRv_10Xv3 [L8TX_190716_01_C07]

source_name: STR - STRv

value: STR - STRv

value: 68 days


title: Mouse_480184_MB - IC_10Xv3 [L8TX_190822_01_H11]


title: Mouse_473980_MB - SC_10Xv3 [L8TX_190725_01_F08]


title: Mouse_473085_STR - LSX_10Xv3 [L8TX_190725_01_D08]


title: Mouse_473084_STR - STRv_10Xv3 [L8TX_190716_01_D07]


title: Mouse_469515_STR - STRv_10Xv3 [L8TX_190716_01_A08]

value: 64 days


title: Mouse_469515_STR - STRv_10Xv3 [L8TX_190716_01_H07]


title: Mouse_471388_STR - LSX_10Xv3 [L8TX_190716_01_E07]

value: 70 days


title: Mouse_468425_STR - STRd_10Xv3 [L8TX_190627_01_E02]

source_name: STR - STRd

value: STR - STRd

value: 62 days


title: Mouse_473084_STR - STRv_10Xv3 [L8TX_190716_01_G07]


title: Mouse_464754_MB - VTA-SN_10Xv3 [L8TX_190614_01_A05]

value: MB - VTA-SN

value: 67 days


title: Mouse_469515_STR - STRv_10Xv3 [L8TX_190716_01_B07]

value: Light


title: Mouse_468425_STR - STRd_10Xv3 [L8TX_190627_01_D02]


title: Mouse_464327_CNU - PAL_10Xv3 [L8TX_190614_01_G06]

source_name: CNU - PAL

value: CNU - PAL


title: Mouse_464327_CNU - PAL_10Xv3 [L8TX_190614_01_E06]


title: Mouse_464327_CNU - PAL_10Xv3 [L8TX_190614_01_H06]


title: Mouse_464327_CNU - PAL_10Xv3 [L8TX_190614_01_F06]


title: Mouse_471388_STR - LSX_10Xv3 [L8TX_190716_01_F07]


title: Mouse_464324_CNU - PAL_10Xv3 [L8TX_190614_01_C06]


title: Mouse_464324_CNU - PAL_10Xv3 [L8TX_190614_01_B06]


title: Mouse_464324_CNU - PAL_10Xv3 [L8TX_190614_01_A06]


title: Mouse_464328_MB - VTA-SN_10Xv3 [L8TX_190614_01_A07]

value: 69 days


title: Mouse_464324_CNU - PAL_10Xv3 [L8TX_190614_01_D06]


title: Mouse_463942_CNU - PAL_10Xv3 [L8TX_190531_01_E01]


title: Mouse_463943_STR - sAMY_10Xv3 [L8TX_190531_01_B01]

source_name: STR - sAMY

value: STR - sAMY


title: Mouse_463943_STR - sAMY_10Xv3 [L8TX_190531_01_A01]


title: Mouse_463942_CNU - PAL_10Xv3 [L8TX_190531_01_D01]


title: Mouse_462434_STR - sAMY_10Xv3 [L8TX_190531_01_B02]


title: Mouse_462434_STR - sAMY_10Xv3 [L8TX_190531_01_H01]


title: Mouse_468425_STR - STRd_10Xv3 [L8TX_190627_01_F02]


title: Mouse_462434_STR - sAMY_10Xv3 [L8TX_190531_01_A02]


title: Mouse_463942_CNU - PAL_10Xv3 [L8TX_190531_01_F01]


title: Mouse_462433_CNU - PAL_10Xv3 [L8TX_190531_01_G01]


title: Mouse_459495_CNU - PAL_10Xv3 [L8TX_190509_01_G09]


title: Mouse_462434_STR - sAMY_10Xv3 [L8TX_190531_01_C02]


title: Mouse_459495_CNU - PAL_10Xv3 [L8TX_190509_01_F09]


title: Mouse_459495_CNU - PAL_10Xv3 [L8TX_190509_01_H09]


title: Mouse_459490_STR - sAMY_10Xv3 [L8TX_190509_01_D09]


title: Mouse_459490_STR - sAMY_10Xv3 [L8TX_190509_01_C09]


title: Mouse_457911_MOp_10Xv3 [L8TX_190430_01_D08]

value: MOp

value: 58 days


title: Mouse_457911_MOp_10Xv3 [L8TX_190430_01_B08]


title: Mouse_459495_CNU - PAL_10Xv3 [L8TX_190509_01_A10]

value: 56 days


title: Mouse_457909_MOp_10Xv3 [L8TX_190430_01_E08]


title: Mouse_457909_MOp_10Xv3 [L8TX_190430_01_F08]


title: Mouse_457909_MOp_10Xv3 [L8TX_190430_01_H08]


title: Mouse_457911_MOp_10Xv3 [L8TX_190430_01_A08]


title: Mouse_457909_MOp_10Xv3 [L8TX_190430_01_G08]


title: Mouse_450095_STR - sAMY_10Xv3 [L8TX_190327_01_F04]


title: Mouse_450095_STR - sAMY_10Xv3 [L8TX_190327_01_G04]


title: Mouse_450087_CNU - PAL_10Xv3 [L8TX_190327_01_E04]


title: Mouse_450087_CNU - PAL_10Xv3 [L8TX_190327_01_B04]


title: Mouse_463942_CNU - PAL_10Xv3 [L8TX_190531_01_C01]


title: Mouse_450087_CNU - PAL_10Xv3 [L8TX_190327_01_D04]


title: Mouse_450087_CNU - PAL_10Xv3 [L8TX_190327_01_C04]


title: Mouse_427378_MOp_10Xv3 [L8TX_181211_01_E01]


title: Mouse_427378_MOp_10Xv3 [L8TX_181211_01_D01]


title: Mouse_427378_MOp_10Xv3 [L8TX_181211_01_B01]


title: Mouse_426003_MOp_10Xv3 [L8TX_181211_01_A01]

value: 61 days


title: Mouse_426003_MOp_10Xv3 [L8TX_181211_01_F01]


title: Mouse_426003_MOp_10Xv3 [L8TX_181211_01_G12]


title: Mouse_459490_STR - sAMY_10Xv3 [L8TX_190509_01_E09]


title: Mouse_426001_HB - MY_10Xv3 [L8TX_181211_01_D03]

source_name: HB - MY

value: HB - MY


title: Mouse_426003_MOp_10Xv3 [L8TX_181211_01_H12]


title: Mouse_427378_MOp_10Xv3 [L8TX_181211_01_C01]


title: Mouse_426001_HB - MY_10Xv3 [L8TX_181211_01_H02]


title: Mouse_423499_MB - SC_10Xv2 [L8TX_181116_01_H10]

value: MB - SC

value: 59 days


title: Mouse_426001_HB - MY_10Xv3 [L8TX_181211_01_G02]


title: Mouse_457911_MOp_10Xv3 [L8TX_190430_01_C08]


title: Mouse_426001_HB - MY_10Xv3 [L8TX_181211_01_G01]


title: Mouse_414907_MB - SC_10Xv2 [L8TX_181011_01_E02]


title: Mouse_421226_MB - SC_10Xv2 [L8TX_181031_01_G07]

value: 54 days


title: Mouse_414907_MB - SC_10Xv2 [L8TX_181011_01_F02]


title: Mouse_421226_MB - SC_10Xv2 [L8TX_181031_01_C08]


title: Mouse_423499_MB - SC_10Xv2 [L8TX_181116_01_B11]


title: Mouse_421226_MB - SC_10Xv2 [L8TX_181031_01_B08]


title: Mouse_421226_MB - SC_10Xv2 [L8TX_181031_01_H07]


title: Mouse_435213_OLF - MOB-AOB_10Xv2 [L8TX_190205_01_G06]

source_name: OLF - MOB-AOB

value: OLF - MOB-AOB

value: 71 days


title: Mouse_414907_MB - SC_10Xv2 [L8TX_181011_01_F03]


title: Mouse_435213_OLF - MOB-AOB_10Xv2 [L8TX_190205_01_F06]


title: Mouse_435213_OLF - MOB-AOB_10Xv2 [L8TX_190205_01_E06]


title: Mouse_434989_OLF - MOB-AOB_10Xv2 [L8TX_190116_01_C05]


title: Mouse_434989_OLF - MOB-AOB_10Xv2 [L8TX_190116_01_B05]


title: Mouse_414907_MB - SC_10Xv2 [L8TX_181011_01_D03]


title: Mouse_443636_OLF - MOB-AOB_10Xv2 [L8TX_190228_01_D12]


title: Mouse_443636_OLF - MOB-AOB_10Xv2 [L8TX_190228_01_C12]


title: Mouse_443636_OLF - MOB-AOB_10Xv2 [L8TX_190228_01_B12]


title: Mouse_434989_OLF - MOB-AOB_10Xv2 [L8TX_190116_01_H04]


title: Mouse_435213_OLF - MOB-AOB_10Xv2 [L8TX_190205_01_H06]


title: Mouse_418115_HY LZ_10Xv2 [L8TX_181019_01_B06]

source_name: HY LZ

value: HY LZ


title: Mouse_425676_HY -  MEZ-PVZ-PVR_10Xv2 [L8TX_181126_01_E11]

source_name: HY -  MEZ-PVZ-PVR

value: HY -  MEZ-PVZ-PVR


title: Mouse_425676_HY -  MEZ-PVZ-PVR_10Xv2 [L8TX_181126_01_D11]


title: Mouse_435213_OLF - MOB-AOB_10Xv2 [L8TX_190205_01_D06]


title: Mouse_425676_HY -  MEZ-PVZ-PVR_10Xv2 [L8TX_181126_01_F11]


title: Mouse_421227_HY -  MEZ-PVZ-PVR_10Xv2 [L8TX_181031_01_E08]

value: 53 days


title: Mouse_425676_HY -  MEZ-PVZ-PVR_10Xv2 [L8TX_181126_01_G11]

value: Light


title: Mouse_421227_HY -  MEZ-PVZ-PVR_10Xv2 [L8TX_181031_01_C07]


title: Mouse_421226_MB - SC_10Xv2 [L8TX_181031_01_A08]


title: Mouse_418113_HY -  MEZ-PVZ-PVR_10Xv2 [L8TX_181019_01_D06]


title: Mouse_407901_TH - Posterior_10Xv2 [L8TX_180829_01_C09]

source_name: TH - Posterior

value: TH - Posterior


title: Mouse_404122_TH - Posterior_10Xv2 [L8TX_180815_01_A07]


title: Mouse_385673_HY LZ_10Xv2 [L8TX_180504_01_F01]


title: Mouse_404123_TH - Middle-medial_10Xv2 [L8TX_180815_01_E07]

source_name: TH - Middle-medial

value: TH - Middle-medial


title: Mouse_404123_TH - Middle-lateral_10Xv2 [L8TX_180815_01_A08]

source_name: TH - Middle-lateral

value: TH - Middle-lateral


title: Mouse_404125_TH - Middle-lateral_10Xv2 [L8TX_180815_01_H07]


title: Mouse_404123_TH - Middle-lateral_10Xv2 [L8TX_180815_01_G07]


title: Mouse_449635_TH - Anterior_10Xv2 [L8TX_190321_01_G03]

source_name: TH - Anterior

value: TH - Anterior


title: Mouse_449635_TH - Anterior_10Xv2 [L8TX_190321_01_H03]


title: Mouse_407905_TH - Middle-lateral_10Xv2 [L8TX_180829_01_C10]

value: 55 days


title: Mouse_407901_TH - Posterior_10Xv2 [L8TX_180829_01_B09]


title: Mouse_449635_TH - Anterior_10Xv2 [L8TX_190321_01_F03]


title: Mouse_407901_TH - Posterior_10Xv2 [L8TX_180829_01_A09]


title: Mouse_404125_TH - Middle-medial_10Xv2 [L8TX_180815_01_G08]


title: Mouse_421227_HY -  MEZ-PVZ-PVR_10Xv2 [L8TX_181031_01_H06]


title: Mouse_404124_TH - Anterior_10Xv2 [L8TX_180815_01_D08]


title: Mouse_443636_OLF - MOB-AOB_10Xv2 [L8TX_190228_01_A12]

value: 58 days


title: Mouse_404124_TH - Anterior_10Xv2 [L8TX_180815_01_E08]


title: Mouse_443636_OLF - MOB-AOB_10Xv2 [L8TX_190228_01_H11]


title: Mouse_459920_OLF - MOB-AOB_10Xv2 [L8TX_190528_01_D10]

value: 68 days


title: Mouse_418113_HY -  MEZ-PVZ-PVR_10Xv2 [L8TX_181019_01_G06]

value: 56 days


title: Mouse_425676_HY -  MEZ-PVZ-PVR_10Xv2 [L8TX_181126_01_C11]


title: Mouse_407905_TH - Middle-lateral_10Xv2 [L8TX_180829_01_F09]


title: Mouse_404123_TH - Middle-medial_10Xv2 [L8TX_180815_01_F07]


title: Mouse_407905_TH - Middle-medial_10Xv2 [L8TX_180829_01_E09]


title: Mouse_443636_OLF - MOB-AOB_10Xv2 [L8TX_190228_01_E11]


title: Mouse_392474_HY LZ_10Xv2 [L8TX_180607_01_D05]


title: Mouse_404123_TH - Middle-lateral_10Xv2 [L8TX_180815_01_B08]


title: Mouse_407905_TH - Middle-medial_10Xv2 [L8TX_180829_01_G09]


title: Mouse_418113_HY -  MEZ-PVZ-PVR_10Xv2 [L8TX_181019_01_E06]


title: Mouse_404122_TH - Anterior_10Xv2 [L8TX_180815_01_B07]


title: Mouse_418115_HY LZ_10Xv2 [L8TX_181019_01_F06]


title: Mouse_421227_HY -  MEZ-PVZ-PVR_10Xv2 [L8TX_181031_01_B07]


title: Mouse_443006_OLF - COA-PAA-NLOT-TR_10Xv2 [L8TX_190228_01_D11]

source_name: OLF - COA-PAA-NLOT-TR

value: OLF - COA-PAA-NLOT-TR


title: Mouse_385673_HY LZ_10Xv2 [L8TX_180504_01_G01]

value: 59 days


title: Mouse_456793_OLF - COA-PAA-NLOT-TR_10Xv2 [L8TX_190423_01_B07]


title: Mouse_404125_TH - Middle-medial_10Xv2 [L8TX_180815_01_F08]


title: Mouse_441865_OLF - PIR_10Xv2 [L8TX_190214_01_F10]

source_name: OLF - PIR

value: OLF - PIR


title: Mouse_421227_HY -  MEZ-PVZ-PVR_10Xv2 [L8TX_181031_01_A07]


title: Mouse_443636_OLF - MOB-AOB_10Xv2 [L8TX_190228_01_E12]

value: OLF - MOB-AOB


title: Mouse_434997_OLF - PIR_10Xv2 [L8TX_190122_01_G05]

value: 63 days


title: Mouse_435849_OLF - COA-PAA-NLOT-TR_10Xv2 [L8TX_190122_01_E05]

value: 61 days


title: Mouse_443005_OLF - COA-PAA-NLOT-TR_10Xv2 [L8TX_190228_01_G12]


title: Mouse_365616_VISp_10Xv2 [L8TX_180115_01_B08]

source_name: VISp

value: VISp


title: Mouse_452715_OLF - PIR_10Xv2 [L8TX_190423_01_D06]

value: 53 days


title: Mouse_404124_TH - Anterior_10Xv2 [L8TX_180815_01_C08]

value: Light


title: Mouse_418113_HY -  MEZ-PVZ-PVR_10Xv2 [L8TX_181019_01_C06]

value: HY -  MEZ-PVZ-PVR


title: Mouse_435849_OLF - COA-PAA-NLOT-TR_10Xv2 [L8TX_190122_01_D05]


title: Mouse_439975_OLF - COA-PAA-NLOT-TR_10Xv2 [L8TX_190205_01_C08]


title: Mouse_439484_OLF - AON-TT-DP_10Xv2 [L8TX_190205_01_G07]

source_name: OLF - AON-TT-DP

value: OLF - AON-TT-DP


title: Mouse_439484_OLF - AON-TT-DP_10Xv2 [L8TX_190205_01_F07]


title: Mouse_439975_OLF - COA-PAA-NLOT-TR_10Xv2 [L8TX_190205_01_B08]


title: Mouse_439975_OLF - COA-PAA-NLOT-TR_10Xv2 [L8TX_190205_01_A08]


title: Mouse_443005_OLF - COA-PAA-NLOT-TR_10Xv2 [L8TX_190228_01_B11]


title: Mouse_459920_OLF - MOB-AOB_10Xv2 [L8TX_190528_01_E10]


title: Mouse_439976_OLF - PIR_10Xv2 [L8TX_190205_01_D08]


title: Mouse_435849_OLF - COA-PAA-NLOT-TR_10Xv2 [L8TX_190122_01_F05]


title: Mouse_439976_OLF - PIR_10Xv2 [L8TX_190205_01_D07]


title: Mouse_380345_ENT_10Xv2 [L8TX_180406_01_C07]

source_name: ENT

value: ENT

value: 57 days


title: Mouse_380345_ENT_10Xv2 [L8TX_180406_01_B06]


title: Mouse_443006_OLF - COA-PAA-NLOT-TR_10Xv2 [L8TX_190228_01_G11]


title: Mouse_443644_OLF - PIR_10Xv2 [L8TX_190228_01_H12]


title: Mouse_439976_OLF - PIR_10Xv2 [L8TX_190205_01_C07]


title: Mouse_449634_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv2 [L8TX_190321_01_C03]

source_name: CTXsp - CLA-EP-LA-BLA-BMA-PA

value: CTXsp - CLA-EP-LA-BLA-BMA-PA


title: Mouse_439976_OLF - PIR_10Xv2 [L8TX_190205_01_E08]


title: Mouse_365616_VISp_10Xv2 [L8TX_180115_01_C08]

value: 58 days


title: Mouse_366292_VIS_10Xv2 [L8TX_180115_01_G09]

source_name: VIS

value: VIS


title: Mouse_374159_TEa-PERI-ECT_10Xv2 [L8TX_180221_01_H11]

source_name: TEa-PERI-ECT

value: TEa-PERI-ECT

value: 54 days


title: Mouse_456793_OLF - COA-PAA-NLOT-TR_10Xv2 [L8TX_190423_01_A07]

value: OLF - COA-PAA-NLOT-TR

value: 56 days


title: Mouse_443005_OLF - COA-PAA-NLOT-TR_10Xv2 [L8TX_190228_01_C11]

value: 59 days


title: Mouse_355877_VISpos_10Xv2 [L8TX_171120_01_A07]

source_name: VISpos

value: VISpos


title: Mouse_374160_TEa-PERI-ECT_10Xv2 [L8TX_180221_01_C12]

value: 55 days


title: Mouse_374160_TEa-PERI-ECT_10Xv2 [L8TX_180221_01_B12]


title: Mouse_455009_OLF - AON-TT-DP_10Xv2 [L8TX_190423_01_F06]


title: Mouse_439484_OLF - AON-TT-DP_10Xv2 [L8TX_190205_01_H07]


title: Mouse_449634_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv2 [L8TX_190321_01_D03]


title: Mouse_461473_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv2 [L8TX_190528_01_B10]

value: 61 days


title: Mouse_461473_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv2 [L8TX_190528_01_C10]


title: Mouse_449370_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv2 [L8TX_190321_01_B03]

value: 53 days


title: Mouse_449634_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv2 [L8TX_190321_01_E03]

value: Light


title: Mouse_434444_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv2 [L8TX_190116_01_G04]

value: 60 days


title: Mouse_395345_TEa-PERI-ECT_10Xv2 [L8TX_180712_01_A06]


title: Mouse_434450_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv2 [L8TX_190116_01_D04]


title: Mouse_385670_TEa-PERI-ECT_10Xv2 [L8TX_180504_01_E01]


title: Mouse_449370_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv2 [L8TX_190321_01_A04]


title: Mouse_374160_TEa-PERI-ECT_10Xv2 [L8TX_180221_01_D12]


title: Mouse_366292_VIS_10Xv2 [L8TX_180115_01_D10]


title: Mouse_366676_VIS_10Xv2 [L8TX_180115_01_G10]


title: Mouse_365616_VISm_10Xv2 [L8TX_180115_01_D08]

source_name: VISm

value: VISm


title: Mouse_365619_VIS_10Xv2 [L8TX_180115_01_E09]


title: Mouse_434444_CTXsp - CLA-EP-LA-BLA-BMA-PA_10Xv2 [L8TX_190116_01_F04]


title: Mouse_455009_OLF - AON-TT-DP_10Xv2 [L8TX_190423_01_E06]

value: OLF - AON-TT-DP


title: Mouse_365617_VISp_10Xv2 [L8TX_180115_01_E08]

value: VISp


title: Mouse_374159_TEa-PERI-ECT_10Xv2 [L8TX_180221_01_A12]


title: Mouse_395342_TEa-PERI-ECT_10Xv2 [L8TX_180712_01_E05]


title: Mouse_412866_SSs-GU-VISC-AIp_10Xv2 [L8TX_180926_01_F01]

source_name: SSs-GU-VISC-AIp

value: SSs-GU-VISC-AIp


title: Mouse_412866_SSs-GU-VISC-AIp_10Xv2 [L8TX_180926_01_B01]


title: Mouse_412866_SSs-GU-VISC-AIp_10Xv2 [L8TX_180926_01_D01]


title: Mouse_412866_SSs-GU-VISC-AIp_10Xv2 [L8TX_180926_01_E01]


title: Mouse_365617_VISm_10Xv2 [L8TX_180115_01_H08]

value: 58 days


title: Mouse_410108_SSp_10Xv2 [L8TX_180907_01_B12]

source_name: SSp

value: SSp


title: Mouse_446701_SSp_10Xv2 [L8TX_190312_01_H01]


title: Mouse_446701_SSp_10Xv2 [L8TX_190312_01_G01]


title: Mouse_446701_SSp_10Xv2 [L8TX_190312_01_F01]


title: Mouse_446701_SSp_10Xv2 [L8TX_190312_01_E01]


title: Mouse_355878_VISp_10Xv2 [L8TX_171120_01_E07]


title: Mouse_366292_VIS_10Xv2 [L8TX_180115_01_C10]

value: VIS

value: 57 days


title: Mouse_366676_VIS_10Xv2 [L8TX_180115_01_C11]


title: Mouse_366292_VIS_10Xv2 [L8TX_180115_01_A10]


title: Mouse_355878_VISm_10Xv2 [L8TX_171120_01_D07]


title: Mouse_446701_SSp_10Xv2 [L8TX_190312_01_D01]


title: Mouse_446701_SSp_10Xv2 [L8TX_190312_01_C01]


title: Mouse_446701_SSp_10Xv2 [L8TX_190312_01_B01]


title: Mouse_446701_SSp_10Xv2 [L8TX_190312_01_A02]


title: Mouse_410107_SSp_10Xv2 [L8TX_180907_01_G11]


title: Mouse_414899_PTLp_10Xv2 [L8TX_181012_01_B05]

source_name: PTLp

value: PTLp


title: Mouse_410107_SSp_10Xv2 [L8TX_180907_01_E11]


title: Mouse_446716_PL-ILA-ORB_10Xv2 [L8TX_190312_01_G02]

source_name: PL-ILA-ORB

value: PL-ILA-ORB


title: Mouse_410110_PTLp_10Xv2 [L8TX_180907_01_B11]


title: Mouse_414901_PTLp_10Xv2 [L8TX_181012_01_C05]


title: Mouse_410108_SSp_10Xv2 [L8TX_180907_01_A12]


title: Mouse_410107_SSp_10Xv2 [L8TX_180907_01_F11]


title: Mouse_446716_PL-ILA-ORB_10Xv2 [L8TX_190312_01_C02]


title: Mouse_446716_PL-ILA-ORB_10Xv2 [L8TX_190312_01_D02]


title: Mouse_372314_PL-ILA-ORB_10Xv2 [L8TX_180221_01_H10]


title: Mouse_372314_PL-ILA-ORB_10Xv2 [L8TX_180221_01_G10]


title: Mouse_446716_PL-ILA-ORB_10Xv2 [L8TX_190312_01_B02]


title: ATAC-seq_Group3_SMARCA4KO_rep2

city: Kanazawa

first: Yusuke

last: Miyanari

address: Kakuma

department: NanoLSI

institute: Kanazawa University

description: Group 3

data_processing:
The sequenced reads were quality controlled by Trimmomatic with the option “ILLUMINACLIP:adapter_file:2:30:10 LEADING:20 TRAILING:20 MINLEN:36”.
Bowtie2 with the parameter “-N 1 -X 2000 --no-mixed --no-discordant” mapped ATAC-seq reads to the hybrid reference genome (hg38 and dm6).
The reads mapped to multiple positions, chrY, chrM, and blacklisted regions were removed by Samtools (http://www.htslib.org/), and the duplicated reads were filtered by Picard MarkDuplicates.
The positions of HG38-mapped reads were corrected by shifting + 4 bp for (+) strand or -5 bp for (-) strand and were used for detecting peak regions.
The scaling factors were calculated by using total mapped read counts for hg38 and dm3, and were used for spike-in normalization.
Assembly: hg38
Supplementary files format and content: BigWig files for each replicate were generated by using deeptools bamCoverage with option --sclaeFactor and subsequently merged into one file by calculating mean enrichment.

source_name: human haploid eHAP cells

growth_protocol: eHAP cells (Horizon Discovery) (Essletzbichler et al., 2014) grown in Iscove’s Modified Dulbecco’s Medium (IMDM, Wako) supplemented with 10% FBS (Sigma) and penicillin/streptomycin (Wako).

extract_protocol:
ATAC-seq was performed as described previously (Buenrostro et al., 2013; Corces et al., 2017) with some modifications. To quantitatively analyze ATAC-seq data between experimental conditions, we used a fixed number of Drosophila S2 cells as a spike-in control for each sample. The read counts for the spike-in were used to internally calibrate ATAC-seq data, as described previously (Bonhoure et al., 2014; Hu et al., 2015; Orlando et al., 2014). In brief, 1x104 (for group1) or 2.5x103 S2 cells (for group2) were first mixed with 1x105 eHAP cells in a tube, washed with cold PBS, and centrifuged at 935 x g for 5 min. Cells were permeabilized with cold lysis buffer (10 mM Tris-HCl, pH 7.4, 10 mM NaCl, 3 mM MgCl2 and 0.1% IGEPAL CA-630). Then cells were transposed using Tn5 complex with MEAB34 adaptors in TAPS-DMF buffer at 37 ˚C for 30 min. Genomic DNA was purified with Monarch PCR & DNA Cleanup Kit (NEB).
After amplification of transposed DNA using Q5 High-Fidelity 2X Master Mix (NEB), DNA was size-selected using SPRI beads to produce libraries with fragments between 150 and 600 bp. To reduce a contamination of mitochondrial DNA, the libraries for group2 were treated with an anti-mitochondrial DNA CRISPR/Cas9 library to specifically digest mitochondrial DNA as described previously (Montefiori et al., 2017). The libraries were sequenced on HiSeq3000 or HiSeq2500 for 100 bp or 50 bp paired-end reads, respectively. Two biological replicates were analyzed for each experimental condition.

treatment_protocol: Cas9-expressing eHAP cells were transfected with a plasmid expressing sgRNAs against indicated gene and puromycin-resistance gene using FuGENE HD (Promega), and selected with puromycin from 24 hrs post-transfection to 72 hrs. On 5 days post-transfection, cells were used for ATAC-seq assays.

value: human haploid eHAP cells

value: eHAP

value: Human haploid cell line

value: SMARCA4 knockout

value: sgRNA expression


title: Mouse_372312_PL-ILA-ORB_10Xv2 [L8TX_180221_01_F10]

value: Light

value: 52 days


title: ATAC-seq_Group3_SMARCA4KO_rep1

description: Group 3


title: Mouse_455006_OLF - AON-TT-DP_10Xv2 [L8TX_190423_01_H06]


title: Mouse_410108_SSp_10Xv2 [L8TX_180907_01_H11]


title: Mouse_372314_PL-ILA-ORB_10Xv2 [L8TX_180221_01_A11]

value: 53 days


title: ATAC-seq_Group3_Ctrl_rep1

description: a control for Group3

value: wild-type


title: ATAC-seq_Group3_Ctrl_rep2

description: a control for Group3


title: Mouse_372312_PL-ILA-ORB_10Xv2 [L8TX_180221_01_E10]


title: Mouse_412204_PTLp_10Xv2 [L8TX_180926_01_C12]

value: 59 days