title: NC

status: Public on Dec 22 2020

city: Chicago

first: Deborah

last: Winter

state: IL

address: 240 E. Huron Street, M300

institute: Northwestern University

data_processing:
Sequenced reads were processed using the 10X Genomics Cell Ranger 3.1.0 pipeline and aligned to the hg19-3.0.0 transcriptome.
Genome_build: hg19
Supplementary_files_format_and_content: matrix table of unique molecular index (UMI) counts per gene per sample (filtered for cells over background)

source_name: Liver Tissue

extract_protocol:
Three 1 cm3 samples were obtained per patient from different areas of the tissue sample.  Samples were subjected to mechanical and chemical digestion to form a single-cell suspension and fluorescence activated cell sorting (FACS) was used to enrich for live CD45+ immune cells.
Libraries were prepared using the 10X Genomics platform with Single Cell 3' v2 (BASM & ALGS) or v3 (iBA and NC) Reagent Kits.  Libraries were sequenced on the Illumina HiSeq 4000 platform.

tag: diagnosis

value: Non-cholestatic control

tag: protocol

value: single-cell RNA-seq


title: WHIM2A: whim2_passage A

status: Public on Dec 31 2020

type: RNA

city: st louis

first: Cynthia

last: Ma

state: Missouri

address: 4515 Mckinley, 4515 Mckinley

department: Medical Oncology

country: USA

institute: Washington University

hyb_protocol: Agilent 60-mer oligo microarray processing protocol

scan_protocol: Microarrays were scanned with an Agilent Scanner.

data_processing: Raw Agilent 4x44K gene expression data were normalized using the BioConductor “limma” package sequentially through background subtraction, loess within-array normalization and quantile between-array normalization. The probe level gene expression data were collapsed to gene level by median expression. ComBat was applied using the R package “sva” to the normalized gene expression data to correct for potential human/mouse batch effect.

molecule: total RNA

organism: Homo sapiens

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

label_protocol: Agilent Low Input Linear Amplification Kit and protocol

growth_protocol: Tumors from xenograft models were cryopreserved.  Tumors from patient samples were frozen and stored in OCT compound.

extract_protocol: Trizol extractions followed by Dnase treatment and column purification.

tag: tissue

value: Total RNA from 10 human cell lines:1_Adenocarcinoma, mammary gland 2_Hepatoblastoma, liver 3_Adenocarcinoma, cervix 4_Embryonal carcinoma, testis 5_Glioblastoma, brain 6_Melanoma 7_Liposarcoma 8_Histiocytic Lymphoma; macrophage; histocyte 9_ Lymphoblastic leukemia, T lymphoblast 10_Plasmacytoma; myeloma; B lymphocyte.  Also, mRNA spiked in from MCF7 and ME16C.

source_name: xenograft tumor_whim2_passage A

value: xenograft tumor

tag: tissue type

value: cryopreserved tissue


title: WHIM2C: whim2_passage C

source_name: xenograft tumor_whim2_passage C


title: WHIM25A: whim25_passage A

source_name: xenograft tumor_whim25_passage A


title: WHIM14Hu: human counterpart tumor_whim14

source_name: human counterpart tumor_whim14

value: human counterpart tumor

value: oct block


title: ALGS

type: SRA

middle: R

library_source: transcriptomic

value: Alagille Syndrome


title: WHIM25Hu: human counterpart tumor_whim25

source_name: human counterpart tumor_whim25


title: WHIM36B: whim36_passage B

source_name: xenograft tumor_whim36_passage B


title: BASM

value: syndromic Biliary Atresia


title: WHIM13B: whim13_passage B

source_name: xenograft tumor_whim13_passage B


title: WHIM25C: whim25_passage C

source_name: xenograft tumor_whim25_passage C


title: WHIM13Hu: human counterpart tumor_whim13

source_name: human counterpart tumor_whim13


title: iBA

value: isolated Biliary Atresia


title: WHIM14A: whim14_passage A

source_name: xenograft tumor_whim14_passage A


title: WHIM12Hu: human counterpart tumor_whim12

source_name: human counterpart tumor_whim12


title: WHIM2Hu: human counterpart tumor_whim2

source_name: human counterpart tumor_whim2


title: WHIM14B: whim14_passage B

source_name: xenograft tumor_whim14_passage B


title: WHIM10D: whim10_passage D

source_name: xenograft tumor_whim10_passage D


title: WHIM10A: whim10_passage A

source_name: xenograft tumor_whim10_passage A


title: WHIM13A: whim13_passage A

source_name: xenograft tumor_whim13_passage A


title: GR-KO-3

status: Public on Oct 01 2020

city: ILLKIRCH

first: Delphine

last: Duteil

address: 1 rue Laurent Fries

country: France

institute: IGBMC

data_processing:
Image analysis and base calling were performed using RTA 2.7.3 and bcl2fastq 2.17.1.14.
We aligned these reads to the mm10 build of the mouse genome using TopHat version 2
The aligned reads were counted with the homer software (analyze RNA) and DEG’s were identified using EdgeR
Genome_build: mm10
Supplementary_files_format_and_content: raw reads

molecule: polyA RNA

organism: Mus musculus

source_name: RNA isolated from gastrocnemius muscles from control (GR floxed) mice and from mice in which GR (glucocorticoid recptor) are selectively ablated in mature skeletal muscle myofibers.

extract_protocol:
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
RNA-Seq libraries were generated from 700ng of total RNA using TruSeq Stranded mRNA LT Sample Preparation Kit (Illumina, San Diego, CA), according to manufacturer's instructions. Briefly, following purification with poly-T oligo attached magnetic beads, the mRNA was fragmented using divalent cations at 94oC for 2 minutes. The cleaved RNA fragments were copied into first strand cDNA using reverse transcriptase and random primers. Strand specificity was achieved by replacing dTTP with dUTP during second strand cDNA synthesis using DNA Polymerase I and RNase H. Following addition of a single 'A' base and subsequent ligation of the adapter on double stranded cDNA fragments, the products were purified and enriched with PCR (30 sec at 98oC; [10 sec at 98oC, 30 sec at 60oC, 30 sec at 72oC] x 12 cycles; 5 min at 72oC) to create the cDNA library. Surplus PCR primers were further removed by purification using AMPure XP beads (Beckman-Coulter, Villepinte, France) and the final cDNA libraries were checked for quality and quantified using capillary electrophoresis.

tag: strain

value: gastrocnemius muscles

tag: age

value: 16 weeks

tag: genotype

value: GR(i)skm-/-


title: GR-KO-2


title: GR-KO-1


title: GR-KO-4


title: WT-3

value: Control


title: WT-4


title: O_glaberrima_60d_RNASEQ

status: Public on Dec 02 2020

city: Beijing

first: Lei

last: Li

state: Beijing

address: 1 Beichen West Road, Chaoyang District, Beijing 100101, P.R.China

country: China

institute: INSTITUTE OF ZOOLOGY, CHINESE ACADEMY OF SCIENCES

data_processing:
For data analysis, raw reads were filtered for adaptor and low quality reads by flexbar2.5.
Clean reads were mapped by Tophat2 package with default parameters.
Resulting BAM files were calculated by Cufflinks for gene expression FPKM  in each species
Genome_build: We downloaded and used the rice genome version 6.1 from the MSU official ftp.  Four IOMAP (International Oryza Map Alignment Project) genomes, Oryza glaberrima, Oryza punctata, Oryza brachyantha RS2, Leersia perrieri and the sorgJGI2.0 were applied for bowtie mapping.

organism: Oryza glaberrima

source_name: 60d after germination plant

growth_protocol: plants are grown in greenhouse

extract_protocol:
In brief, total RNA was extracted using TRIzol buffer with 4g fresh tissue from the same plant which was used for ChIP experiment. Then RNA quality was validated by Agilent Bioanalyzer and samples with good quality were purified by RNA Purification Beads and submitted to BGI (shenzhen) for RNASEQ library construction
RNASEQ library was constructed with TruSeq RNA Sample Prep Kit (Illumina) according to the standard protocol. Six RNASEQ libraries were adjusted and sequenced in the same lane with proper barcodes with pair end 90bp strategy.

value: aerial tissue

tag: developmental stage

value: tillering stage 60d after germination


title: WT-2


title: WT-1


title: ATAC-skm

library_source: genomic

data_processing:
Image analysis and base calling were performed using RTA 2.7.3 and bcl2fastq 2.17.1.14.
Adapter dimer reads were removed using DimerRemover.
Raw fastq reads were first evaluated using FastQC before continuing.
For each library, raw .fastq reads were aligned using Bowtie2 version 2.3.4.3 to the mm10 reference genome.
Chromatin accessibility peaks were called using MACS2 using custom parameters (–nomodel –broad –shift -100 –extsize 200 –keep-dup all –qvalue 0.05).
Downstream processing of sequencing data was performed using Samtools.
Genome_build: mm10
Supplementary_files_format_and_content: fastq files

molecule: genomic DNA

source_name: ATAC-seq in mouse skeletal muscle

extract_protocol:
ATAC-seq libraries were generated as described (Buenrostro et al. 2013) with some modifications. For Transposition Reaction, 50,000 nuclei from murine skeletal muscles were obtained (Joshi et al. 2017). To generate multiplexed libraries, the transposed DNA was amplified by PCR. The amplified fragments were further purified two times with AMPure XP beads.
Libraries were prepared as described in Buenrostro et al., 2013.

value: Limb muscles

value: 12 weeks

tag: phenotype

value: WT


title: WHIM12A: whim12_passage A

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

value: Total RNA from 10 human cell lines:1_Adenocarcinoma, mammary gland 2_Hepatoblastoma, liver 3_Adenocarcinoma, cervix 4_Embryonal carcinoma, testis 5_Glioblastoma, brain 6_Melanoma 7_Liposarcoma 8_Histiocytic Lymphoma; macrophage; histocyte 9_ Lymphoblastic leukemia, T lymphoblast 10_Plasmacytoma; myeloma; B lymphocyte.  Also, mRNA spiked in from MCF7 and ME16C.

source_name: xenograft tumor_whim12_passage A


title: WHIM12C: whim12_passage C

source_name: xenograft tumor_whim12_passage C

value: xenograft tumor


title: skeletal muscle, GR

data_processing:
Image analysis and base calling were performed using RTA 2.7.3 and bcl2fastq 2.17.1.14.
Sequence reads were mapped to reference genome mm10 using Bowtie 1.0.0 with the following parameters -m 1 --strata --best -y -S -l 40 -p 2.
Only uniquely mapped reads were retained for further analysis. Peak calling was performed with MACS2 with a qval less than 0.01
Genome_build: mm10
Supplementary_files_format_and_content: xlsx files, containing a header and 10 columns

source_name: skeletal muscle

extract_protocol:
Nuclei were extracted as described in Joshi 2017
ChIP samples were purified using Agencourt AMPure XP beads (Beckman Coulter) and quantified with the Qubit (Invitrogen). ChIP-seq libraries were prepared from 10 ng of double-stranded purified DNA using the MicroPlex Library Preparation kit v2 (C05010014, Diagenode s.a., Seraing, Belgium), according to manufacturer's instructions. In the first step, the DNA was repaired and yielded molecules with blunt ends. In the next step, stem-loop adaptors with blocked 5 prime ends were ligated to the 5 prime end of the genomic DNA, leaving a nick at the 3 prime end. The adaptors cannot ligate to each other and do not have single-strand tails, avoiding non-specific background. In the final step, the 3 prime ends of the genomic DNA were extended to complete library synthesis and Illumina compatible indexes were added through a PCR amplification (7  cycles). Amplified libraries were purified and size-selected using Agencourt AMPure XP beads (Beckman Coulter) to remove unincorporated primers and other reagents.

value: skeletal muscle

value: 10-12 weeks

tag: chip antibody

value: GR (C-terminal, IGBMC, 3249)


title: skeletal muscle, H3K27ac

value: H3K27ac (Active Motif, 39133)


title: skeletal muscle, Ctcf

value: Ctcf (Sigma-Aldrich, 07-729)


title: skeletal muscle, Pol2

value: Pol2 (Santa Cruz H-224, SC9001)


title: skeletal muscle, Input2

description: Input related to Ctcf and H3K4me3


title: skeletal muscle, H3K4me1

value: H3K4me1 (Active Motif, 39297)


title: WHIM10C: whim10_passage C

source_name: xenograft tumor_whim10_passage C

value: cryopreserved tissue


title: skeletal muscle, Input1

description: Input related to GR, H3K27ac, Pol2 and H3K4me1


title: Muscle_WT_Pik3r1_rep2

description: Genomic DNA after 4C-seq protocol and PCR amplification with bait-specific primers. Read length starts at 50, but is reduced to 23 when removing bait sequence during demultiplexing

data_processing:
Library strategy: 4C
Image analysis and base calling were performed using RTA 2.7.7 and bcl2fastq
Individual 4C-seq experiments were demultiplexed according to bait primer sequence using sabre, with two mismatches permitted (-m 2)
Reads were aligned using Bowtie (v1.0.0) with the settings -a -m 1 --best --strata
Mapped reads were filtered and mapped to DpnII restriction fragments, essentially as described in van de Werken, H.J. et al. Robust 4C-seq data analysis to screen for regulatory DNA interactions. Nature Methods 910: 969-972.
Genome_build: mm10
Supplementary_files_format_and_content: Cis files, containing a header and two columns (restriction fragment midpoint coordinate, counts), the input format for the 4See browser: https://github.com/TomSexton00/4See

source_name: Skeletal muscle

extract_protocol:
Cells were detached with trypsin, washed by centrifugation in PBS, and then fixed with 2% formaldehyde in cell culture medium for 10 min at 23°C. The fixation was quenched with cold glycine at a final concentration of 125 mM, then cells were washed with PBS and permeabilized on ice for 1 h with 10 mM Tris-HCl, pH 8, 100 mM NaCl, 0.1% NP-40 and protease inhibitors. Nuclei were resuspended in DpnII restriction buffer at 10 million nuclei/mL concentration, and 5 million nuclei aliquots were further permeabilized by treatment for 1 h with 0.4% SDS at 37°C, then a further 1h with 2.6% Triton-X100 at 37°C. Nuclei were digested overnight with 1000 U DpnII at 37°C, then washed twice by centrifuging and resuspending in T4 DNA ligase buffer. In situ ligation was performed in 400 μL T4 DNA ligase buffer with 20,000 U T4 DNA ligase overnight at 16°C. DNA was purified by reverse cross-linking with an overnight incubation at 65°C with proteinase K, followed by RNase A digestion, phenol/chloroform extraction and isopropanol precipitation. The DNA was digested with 5 U/μg Csp6I at 37°C overnight, then re-purified by phenol/chloroform extraction and isopropanol precipitation. The DNA was then circularized by ligation with 200 U/μg T4 DNA ligase under dilute conditions (5 ng/μL DNA), and purified by phenol/chloroform extraction and isopropanol precipitation. 50 ng aliquots of this DNA were used as template for PCR with bait-specific primers containing Illumina adapter termini (primer sequences and optimal PCR conditions available on request)
PCR reactions were pooled, primers removed by washing with 1.8x AMPure XP beads, then quantified on a Bioanalyzer (Agilent) before sequencing with a HiSeq 4000 (Illumina).

treatment_protocol: Nuclei were extracted as described in Joshi 2017

value: Skeletal muscle

tag: restriction enzymes

value: DpnII - Csp6I


title: Muscle_GRko_Pik3r1_rep2

value: KO


title: Muscle_WT_Pik3r1_rep1

description: Genomic DNA after 4C-seq protocol and PCR amplification with bait-specific primers. Read length starts at 50, but is reduced to 29 when removing bait sequence during demultiplexing


title: DP_Pik3r1

source_name: CD4+/CD8+ thymocytes

treatment_protocol:
4 week old thymus was dissected, cells were washed and filtered in PBS, and then sorted by FACS with anti-CD4-PE and anti-CD8a-FITC antibodies (eBioScience)
Nuclei were extracted as described in Joshi 2017

value: Thymus


title: Muscle_GRko_Pik3r1_rep1


title: HK09.C9.M.Low.GFP.A

status: Public on Aug 01 2020

city: Singapore

first: Boon Seng

last: SOH

address: 61 Biopolis Drive, Proteos

department: Institute of Molecular and Cell Biology (IMCB)

country: Singapore

institute: A*STAR

data_processing:
Raw data starting from fastq format are processed and analyzed by using CSI NGS Portal: https://csibioinfo.nus.edu.sg/csingsportal
Reads with adapters were trimmed by using Trimmomatic (v0.38) software retaining the reads with >= 30 bases after trimming.
Clean reads were then mapped to reference genome (hg19) using STAR (v2.7.3a) with default parameters.
Gene expression quantification was done by using HTSeq-count (v0.11.2) in strand-specific mode to obtain raw read counts for each gene.
Differential gene expression analysis was performed by using DESeq2 (v1.24.0) starting from the raw read counts on the sense strand. Initially 12 samples from the same batch were normalized together, 6 of which were then removed from the further analyses. The samples from C9 Mature Low GFP to C9 Fetal Hi GFP were compared after collapsing the three samples within each group as replicates.
Genes that are not expressed or lowly expressed (read counts <= 2 on average per sample) were removed from the analysis.
Genome_build: hg19
Supplementary_files_format_and_content: The processed data file includes raw read counts, normalized read counts, DESeq2 output with statistics, list of differentially expressed genes and pathway enrichment analysis of DE genes as included in the paper.

source_name: C9 Mature Low GFP

growth_protocol: Cells were grown in RPMI-1640 Medium (1x) (Hyclone) supplemented with B27

extract_protocol:
Total RNA samples were extracted from QIAgen RNeasy Mini Kit with on-column DNase treatment
Strand-specific cDNA library according to Illumina's TruSeq Stranded mRNA Library Prep Kit

tag: cell line

value: mature

tag: treatment

value: low GFP


title: C9.Fetal.Hi.GFP.C

source_name: C9 Fetal Hi GFP

value: fetal

value: high GFP


title: skeletal muscle, H3K4me3

value: WT


title: C9.Fetal.Hi.GFP.A


title: Huh7 Fzd2 OE Rep3

city: Seattle

first: Taran

last: Gujral

state: Washington

address: 1100 Fairview Avenue North

institute: Fred Hutchinson Cancer Center

data_processing:
Demultiplexing was performed using Illumina's bcl2fastq-1.8.4 software.
Sequenced reads with Illumina's pass filter were aligned to UCSC hg38 using tophat-2.1.0. Parameters used were --mate-inner-dist 80 --library-type fr-unstranded -I 500000 --segment-length 25
Version 1.114 of picard tools was used to mark duplicates and add read group information to the resulting BAM files to prepare them for running RNA-SeQC.
HTSeq-count v 0.6.0 was used to calculate gene counts using the intersection-strict counting mode.
Genome_build: hg38
Supplementary_files_format_and_content: tab delimited file containing raw gene counts per-sample

source_name: Huh7 cells

extract_protocol:
Total RNA was extracted using RNAeasy mini kit (Qiagen)
Libraries were prepared according to Illumina's instructions accompanying the RNA sample kit.

tag: cell type

value: Epithelial cells


title: Huh7 Fzd2 OE Rep2


title: Huh7 WT Rep 2


title: Huh7 Fzd2 OE Rep1


title: FOCUS-shFzd2_rep3

source_name: FOCUS cells

value: Mesenchymal cells


title: FOCUS-shFzd2_rep2


title: FOCUS-shFzd2_rep1


title: Huh7 WT Rep 1


title: FOCUS-GFP_rep3


title: FOCUS-GFP_rep2


title: FOCUS-GFP_rep1


title: HK09.C9.M.Low.GFP.C


title: C9.Fetal.Hi.GFP.B


title: HK09.C9.M.Low.GFP.B


title: Huh7 WT Rep 3


title: Breast Cancer Array_Patient ID_ 21073_BL

status: Public on Apr 13 2020

data_processing: txt files from Agilent Feature Extraction software were loaded into the UNC-CH Microarray Database. Final loess, normalized log2 ratios (Cy5-sample/Cy3-control) for each probe were retrieved after applying default quality control filters.

tag: reference

value: Total RNA from 10 human cell lines:1_Adenocarcinoma, mammary gland 2_Hepatoblastoma, liver 3_Adenocarcinoma, cervix 4_Embryonal carcinoma, testis 5_Glioblastoma, brain 6_Melanoma 7_Liposarcoma 8_Histiocytic Lymphoma; macrophage; histocyte 9_ Lymphoblastic leukemia, T lymphoblast 10_Plasmacytoma; myeloma; B lymphocyte.  Also, mRNA spiked in from MCF7 and ME16C.

source_name: Primary Breast Tumor_Patient ID_ 21073_BL

growth_protocol: patient biopsies were frozen and stored in oct compound

tag: test

value: oct blocks from fine needle biopsies which contained at least 50 percent tumor cellularity


title: Breast Cancer Array_Patient ID_ 18183_S

source_name: Primary Breast Tumor_Patient ID_ 18183_S


title: Breast Cancer Array_Patient ID_ 21073_w2

source_name: Primary Breast Tumor_Patient ID_ 21073_w2


title: Breast Cancer Array_Patient ID_ 18186_w2

source_name: Primary Breast Tumor_Patient ID_ 18186_w2


title: Breast Cancer Array_Patient ID_ 21055_w2

source_name: Primary Breast Tumor_Patient ID_ 21055_w2


title: Breast Cancer Array_Patient ID_ 18197_S

source_name: Primary Breast Tumor_Patient ID_ 18197_S


title: Breast Cancer Array_Patient ID_ 21064_w2

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 21064_w2


title: Breast Cancer Array_Patient ID_ 21041_S

source_name: Primary Breast Tumor_Patient ID_ 21041_S


title: Breast Cancer Array_Patient ID_ 21056_BL

source_name: Primary Breast Tumor_Patient ID_ 21056_BL


title: Breast Cancer Array_Patient ID_ 21071_BL

source_name: Primary Breast Tumor_Patient ID_ 21071_BL


title: Breast Cancer Array_Patient ID_ 21055_S

source_name: Primary Breast Tumor_Patient ID_ 21055_S


title: Breast Cancer Array_Patient ID_ 21043_w2

source_name: Primary Breast Tumor_Patient ID_ 21043_w2


title: Breast Cancer Array_Patient ID_ 18188_w2

source_name: Primary Breast Tumor_Patient ID_ 18188_w2


title: Breast Cancer Array_Patient ID_ 18188_S

source_name: Primary Breast Tumor_Patient ID_ 18188_S


title: Breast Cancer Array_Patient ID_ 18182_S

source_name: Primary Breast Tumor_Patient ID_ 18182_S


title: Breast Cancer Array_Patient ID_ 18161_S

source_name: Primary Breast Tumor_Patient ID_ 18161_S


title: Breast Cancer Array_Patient ID_ 18154_BL

source_name: Primary Breast Tumor_Patient ID_ 18154_BL


title: Breast Cancer Array_Patient ID_ 18143_S

source_name: Primary Breast Tumor_Patient ID_ 18143_S


title: Breast Cancer Array_Patient ID_ 18142_w2_2nd Redo

source_name: Primary Breast Tumor_Patient ID_ 18142_w2_2nd Redo


title: Breast Cancer Array_Patient ID_ 18164_W2

source_name: Primary Breast Tumor_Patient ID_ 18164_W2


title: Breast Cancer Array_Patient ID_ 18104_S

source_name: Primary Breast Tumor_Patient ID_ 18104_S


title: Breast Cancer Array_Patient ID_ 18145_S

source_name: Primary Breast Tumor_Patient ID_ 18145_S


title: Breast Cancer Array_Patient ID_ 18143_w2

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 18143_w2


title: Breast Cancer Array_Patient ID_ 18140_BL

source_name: Primary Breast Tumor_Patient ID_ 18140_BL


title: Breast Cancer Array_Patient ID_ 18142_BL

source_name: Primary Breast Tumor_Patient ID_ 18142_BL


title: Breast Cancer Array_Patient ID_ 18074_S

source_name: Primary Breast Tumor_Patient ID_ 18074_S


title: Breast Cancer Array_Patient ID_ 18096_BL

source_name: Primary Breast Tumor_Patient ID_ 18096_BL


title: Breast Cancer Array_Patient ID_ 18155_S

source_name: Primary Breast Tumor_Patient ID_ 18155_S


title: Breast Cancer Array_Patient ID_ 18104_w2

source_name: Primary Breast Tumor_Patient ID_ 18104_w2


title: Breast Cancer Array_Patient ID_ 18060_w2

source_name: Primary Breast Tumor_Patient ID_ 18060_w2


title: Breast Cancer Array_Patient ID_ 18028_w2

source_name: Primary Breast Tumor_Patient ID_ 18028_w2


title: Breast Cancer Array_Patient ID_ 17972_BL

source_name: Primary Breast Tumor_Patient ID_ 17972_BL


title: Breast Cancer Array_Patient ID_ 17919_w2

source_name: Primary Breast Tumor_Patient ID_ 17919_w2


title: Breast Cancer Array_Patient ID_ 17967_S

source_name: Primary Breast Tumor_Patient ID_ 17967_S


title: Breast Cancer Array_Patient ID_ 17946_S

source_name: Primary Breast Tumor_Patient ID_ 17946_S


title: Breast Cancer Array_Patient ID_ 18034_M Redo

source_name: Primary Breast Tumor_Patient ID_ 18034_M Redo


title: Breast Cancer Array_Patient ID_ 18047_BL

source_name: Primary Breast Tumor_Patient ID_ 18047_BL


title: Breast Cancer Array_Patient ID_ 17982_w2

source_name: Primary Breast Tumor_Patient ID_ 17982_w2


title: Breast Cancer Array_Patient ID_ 17967_BL

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 17967_BL


title: Breast Cancer Array_Patient ID_ 17888_w2

source_name: Primary Breast Tumor_Patient ID_ 17888_w2


title: Breast Cancer Array_Patient ID_ 17835_S

source_name: Primary Breast Tumor_Patient ID_ 17835_S


title: Breast Cancer Array_Patient ID_ 17914_S_Redo

source_name: Primary Breast Tumor_Patient ID_ 17914_S_Redo


title: Breast Cancer Array_Patient ID_ 17830_w2

source_name: Primary Breast Tumor_Patient ID_ 17830_w2


title: Breast Cancer Array_Patient ID_ 17843_w2 Redo

source_name: Primary Breast Tumor_Patient ID_ 17843_w2 Redo


title: Breast Cancer Array_Patient ID_ 18015_w2

source_name: Primary Breast Tumor_Patient ID_ 18015_w2


title: Breast Cancer Array_Patient ID_ 18027_w2

source_name: Primary Breast Tumor_Patient ID_ 18027_w2


title: Breast Cancer Array_Patient ID_ 17935_w2

source_name: Primary Breast Tumor_Patient ID_ 17935_w2


title: Breast Cancer Array_Patient ID_ 18053_S

source_name: Primary Breast Tumor_Patient ID_ 18053_S


title: Breast Cancer Array_Patient ID_ 18060_S

source_name: Primary Breast Tumor_Patient ID_ 18060_S


title: Breast Cancer Array_Patient ID_ 17830_S

source_name: Primary Breast Tumor_Patient ID_ 17830_S


title: Breast Cancer Array_Patient ID_ 17915_S

source_name: Primary Breast Tumor_Patient ID_ 17915_S


title: Breast Cancer Array_Patient ID_ 17929_BL

source_name: Primary Breast Tumor_Patient ID_ 17929_BL


title: Breast Cancer Array_Patient ID_ 17915_BL

source_name: Primary Breast Tumor_Patient ID_ 17915_BL


title: Breast Cancer Array_Patient ID_ 17914_BL

source_name: Primary Breast Tumor_Patient ID_ 17914_BL


title: Breast Cancer Array_Patient ID_ 17914_w2

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 17914_w2


title: Breast Cancer Array_Patient ID_ 17870_S

source_name: Primary Breast Tumor_Patient ID_ 17870_S


title: Breast Cancer Array_Patient ID_ 17823_S

source_name: Primary Breast Tumor_Patient ID_ 17823_S


title: Breast Cancer Array_Patient ID_ 17774_BL

source_name: Primary Breast Tumor_Patient ID_ 17774_BL


title: Breast Cancer Array_Patient ID_ 17784_M

source_name: Primary Breast Tumor_Patient ID_ 17784_M


title: Breast Cancer Array_Patient ID_ 17783_S

source_name: Primary Breast Tumor_Patient ID_ 17783_S


title: Breast Cancer Array_Patient ID_ 17746_W2

source_name: Primary Breast Tumor_Patient ID_ 17746_W2


title: Breast Cancer Array_Patient ID_ 17740_BL

source_name: Primary Breast Tumor_Patient ID_ 17740_BL


title: Breast Cancer Array_Patient ID_ 17736_W2_Redo

source_name: Primary Breast Tumor_Patient ID_ 17736_W2_Redo


title: Breast Cancer Array_Patient ID_ 17736_M

source_name: Primary Breast Tumor_Patient ID_ 17736_M


title: Breast Cancer Array_Patient ID_ 17733_S_Redo

source_name: Primary Breast Tumor_Patient ID_ 17733_S_Redo


title: Breast Cancer Array_Patient ID_ 17734_w2 Redo

source_name: Primary Breast Tumor_Patient ID_ 17734_w2 Redo


title: Breast Cancer Array_Patient ID_ 17669_M

source_name: Primary Breast Tumor_Patient ID_ 17669_M


title: Breast Cancer Array_Patient ID_ 17736_BL

source_name: Primary Breast Tumor_Patient ID_ 17736_BL


title: Breast Cancer Array_Patient ID_ 17678_BL

source_name: Primary Breast Tumor_Patient ID_ 17678_BL


title: Breast Cancer Array_Patient ID_ 17642_w2

source_name: Primary Breast Tumor_Patient ID_ 17642_w2


title: Breast Cancer Array_Patient ID_ 17558_w2

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 17558_w2


title: Breast Cancer Array_Patient ID_ 17645_S

source_name: Primary Breast Tumor_Patient ID_ 17645_S


title: Breast Cancer Array_Patient ID_ 17521_S

source_name: Primary Breast Tumor_Patient ID_ 17521_S


title: Breast Cancer Array_Patient ID_ 17686_S

source_name: Primary Breast Tumor_Patient ID_ 17686_S


title: Breast Cancer Array_Patient ID_ 17706_W2

source_name: Primary Breast Tumor_Patient ID_ 17706_W2


title: Breast Cancer Array_Patient ID_ 17567_w2

source_name: Primary Breast Tumor_Patient ID_ 17567_w2


title: Breast Cancer Array_Patient ID_ 17645_BL

source_name: Primary Breast Tumor_Patient ID_ 17645_BL


title: Breast Cancer Array_Patient ID_ 17522_S

source_name: Primary Breast Tumor_Patient ID_ 17522_S


title: Breast Cancer Array_Patient ID_ 17586_S

source_name: Primary Breast Tumor_Patient ID_ 17586_S


title: Breast Cancer Array_Patient ID_ 17479_BL

source_name: Primary Breast Tumor_Patient ID_ 17479_BL


title: Breast Cancer Array_Patient ID_ 17457_S

source_name: Primary Breast Tumor_Patient ID_ 17457_S


title: Breast Cancer Array_Patient ID_ 17467_S

source_name: Primary Breast Tumor_Patient ID_ 17467_S


title: Breast Cancer Array_Patient ID_ 17739_S

source_name: Primary Breast Tumor_Patient ID_ 17739_S


title: Breast Cancer Array_Patient ID_ 17601_S

source_name: Primary Breast Tumor_Patient ID_ 17601_S


title: Breast Cancer Array_Patient ID_ 17490_S

source_name: Primary Breast Tumor_Patient ID_ 17490_S


title: Breast Cancer Array_Patient ID_ 17558_S

source_name: Primary Breast Tumor_Patient ID_ 17558_S


title: Breast Cancer Array_Patient ID_ 17445_S

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 17445_S


title: Breast Cancer Array_Patient ID_ 17448_BL

source_name: Primary Breast Tumor_Patient ID_ 17448_BL


title: Breast Cancer Array_Patient ID_ 17423_S

source_name: Primary Breast Tumor_Patient ID_ 17423_S


title: Breast Cancer Array_Patient ID_ 17424_S

source_name: Primary Breast Tumor_Patient ID_ 17424_S


title: Breast Cancer Array_Patient ID_ 17659_w2

source_name: Primary Breast Tumor_Patient ID_ 17659_w2


title: Breast Cancer Array_Patient ID_ 17536_S

source_name: Primary Breast Tumor_Patient ID_ 17536_S


title: Breast Cancer Array_Patient ID_ 17442_w2

source_name: Primary Breast Tumor_Patient ID_ 17442_w2


title: Breast Cancer Array_Patient ID_ 17409_S

source_name: Primary Breast Tumor_Patient ID_ 17409_S


title: Breast Cancer Array_Patient ID_ 17424_w2

source_name: Primary Breast Tumor_Patient ID_ 17424_w2


title: Breast Cancer Array_Patient ID_ 17448_S

source_name: Primary Breast Tumor_Patient ID_ 17448_S


title: Breast Cancer Array_Patient ID_ 17419_BL_Redo

source_name: Primary Breast Tumor_Patient ID_ 17419_BL_Redo


title: Breast Cancer Array_Patient ID_ 17385_S

source_name: Primary Breast Tumor_Patient ID_ 17385_S


title: Breast Cancer Array_Patient ID_ 17352_bl

source_name: Primary Breast Tumor_Patient ID_ 17352_BL


title: Breast Cancer Array_Patient ID_ 17387_BL

source_name: Primary Breast Tumor_Patient ID_ 17387_BL


title: Breast Cancer Array_Patient ID_ 17382_S

source_name: Primary Breast Tumor_Patient ID_ 17382_S


title: Breast Cancer Array_Patient ID_ 17442_S

source_name: Primary Breast Tumor_Patient ID_ 17442_S


title: Breast Cancer Array_Patient ID_ 17419_W2

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 17419_W2


title: Breast Cancer Array_Patient ID_ 17646_S

source_name: Primary Breast Tumor_Patient ID_ 17646_S


title: Breast Cancer Array_Patient ID_ 17387_S

source_name: Primary Breast Tumor_Patient ID_ 17387_S


title: Breast Cancer Array_Patient ID_ 17328_S

source_name: Primary Breast Tumor_Patient ID_ 17328_S


title: Breast Cancer Array_Patient ID_ 17359_S

source_name: Primary Breast Tumor_Patient ID_ 17359_S


title: Breast Cancer Array_Patient ID_ 17274_S

source_name: Primary Breast Tumor_Patient ID_ 17274_S


title: Breast Cancer Array_Patient ID_ 17278_S

source_name: Primary Breast Tumor_Patient ID_ 17278_S


title: Breast Cancer Array_Patient ID_ 17407_S

source_name: Primary Breast Tumor_Patient ID_ 17407_S


title: Breast Cancer Array_Patient ID_ 17240_S

source_name: Primary Breast Tumor_Patient ID_ 17240_S


title: Breast Cancer Array_Patient ID_ 17359_BL

source_name: Primary Breast Tumor_Patient ID_ 17359_BL


title: Breast Cancer Array_Patient ID_ 17243_W2

source_name: Primary Breast Tumor_Patient ID_ 17243_W2


title: Breast Cancer Array_Patient ID_ 17211_S

source_name: Primary Breast Tumor_Patient ID_ 17211_S


title: Breast Cancer Array_Patient ID_ 17175_S

source_name: Primary Breast Tumor_Patient ID_ 17175_S


title: Breast Cancer Array_Patient ID_ 17232_S_Redo

source_name: Primary Breast Tumor_Patient ID_ 17232_S_Redo


title: Breast Cancer Array_Patient ID_ 17170_S

source_name: Primary Breast Tumor_Patient ID_ 17170_S


title: Breast Cancer Array_Patient ID_ 17138_S

source_name: Primary Breast Tumor_Patient ID_ 17138_S


title: Breast Cancer Array_Patient ID_ 17211_w2

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 17211_w2


title: Breast Cancer Array_Patient ID_ 17175_BL

source_name: Primary Breast Tumor_Patient ID_ 17175_BL


title: Breast Cancer Array_Patient ID_ 17134_S

source_name: Primary Breast Tumor_Patient ID_ 17134_S


title: Breast Cancer Array_Patient ID_ 17117_BL

source_name: Primary Breast Tumor_Patient ID_ 17117_BL


title: Breast Cancer Array_Patient ID_ 17138_BL

source_name: Primary Breast Tumor_Patient ID_ 17138_BL


title: Breast Cancer Array_Patient ID_ 17055_BL

source_name: Primary Breast Tumor_Patient ID_ 17055_BL


title: Breast Cancer Array_Patient ID_ 17074_S

source_name: Primary Breast Tumor_Patient ID_ 17074_S


title: Breast Cancer Array_Patient ID_ 17134_w2

source_name: Primary Breast Tumor_Patient ID_ 17134_w2


title: Breast Cancer Array_Patient ID_ 17114_M

source_name: Primary Breast Tumor_Patient ID_ 17114_M


title: Breast Cancer Array_Patient ID_ 17060_BL

source_name: Primary Breast Tumor_Patient ID_ 17060_BL


title: Breast Cancer Array_Patient ID_ 17036_w2

source_name: Primary Breast Tumor_Patient ID_ 17036_w2


title: Breast Cancer Array_Patient ID_ 17171_S

source_name: Primary Breast Tumor_Patient ID_ 17171_S


title: Breast Cancer Array_Patient ID_ 16994_S

source_name: Primary Breast Tumor_Patient ID_ 16994_S


title: Breast Cancer Array_Patient ID_ 17064_W2

source_name: Primary Breast Tumor_Patient ID_ 17064_W2


title: Breast Cancer Array_Patient ID_ 17050_BL

source_name: Primary Breast Tumor_Patient ID_ 17050_BL


title: Breast Cancer Array_Patient ID_ 17074_w2

source_name: Primary Breast Tumor_Patient ID_ 17074_w2


title: Breast Cancer Array_Patient ID_ 17005_S

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 17005_S


title: Breast Cancer Array_Patient ID_ 17078_BL

source_name: Primary Breast Tumor_Patient ID_ 17078_BL


title: Breast Cancer Array_Patient ID_ 16990_BL

source_name: Primary Breast Tumor_Patient ID_ 16990_BL


title: Breast Cancer Array_Patient ID_ 17064_BL

source_name: Primary Breast Tumor_Patient ID_ 17064_BL


title: Breast Cancer Array_Patient ID_ 17044_S

source_name: Primary Breast Tumor_Patient ID_ 17044_S


title: Breast Cancer Array_Patient ID_ 17003_w2

source_name: Primary Breast Tumor_Patient ID_ 17003_w2


title: Breast Cancer Array_Patient ID_ 17005_w2

source_name: Primary Breast Tumor_Patient ID_ 17005_w2


title: Breast Cancer Array_Patient ID_ 16970_S

source_name: Primary Breast Tumor_Patient ID_ 16970_S


title: Breast Cancer Array_Patient ID_ 16957_BL

source_name: Primary Breast Tumor_Patient ID_ 16957_BL


title: Breast Cancer Array_Patient ID_ 16998_S

source_name: Primary Breast Tumor_Patient ID_ 16998_S


title: Breast Cancer Array_Patient ID_ 16965_S

source_name: Primary Breast Tumor_Patient ID_ 16965_S


title: Breast Cancer Array_Patient ID_ 16956_S

source_name: Primary Breast Tumor_Patient ID_ 16956_S


title: Breast Cancer Array_Patient ID_ 16949_S

source_name: Primary Breast Tumor_Patient ID_ 16949_S


title: Breast Cancer Array_Patient ID_ 16969_w2

source_name: Primary Breast Tumor_Patient ID_ 16969_w2


title: Breast Cancer Array_Patient ID_ 16942_BL

source_name: Primary Breast Tumor_Patient ID_ 16942_BL


title: Breast Cancer Array_Patient ID_ 16867_w2

source_name: Primary Breast Tumor_Patient ID_ 16867_w2


title: Breast Cancer Array_Patient ID_ 16934_S_Redo

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 16934_S_Redo


title: Breast Cancer Array_Patient ID_ 16929_w2

source_name: Primary Breast Tumor_Patient ID_ 16929_w2


title: Breast Cancer Array_Patient ID_ 16860_w2

source_name: Primary Breast Tumor_Patient ID_ 16860_w2


title: Breast Cancer Array_Patient ID_ 16850_w2_REDO

source_name: Primary Breast Tumor_Patient ID_ 16850_w2_REDO


title: Breast Cancer Array_Patient ID_ 16847_w2

source_name: Primary Breast Tumor_Patient ID_ 16847_w2


title: Breast Cancer Array_Patient ID_ 16858_S

source_name: Primary Breast Tumor_Patient ID_ 16858_S


title: Breast Cancer Array_Patient ID_ 16825_S_Redo

source_name: Primary Breast Tumor_Patient ID_ 16825_S_Redo


title: Breast Cancer Array_Patient ID_ 16772_BL

source_name: Primary Breast Tumor_Patient ID_ 16772_BL


title: Breast Cancer Array_Patient ID_ 16935_BL Redo

source_name: Primary Breast Tumor_Patient ID_ 16935_BL Redo


title: Breast Cancer Array_Patient ID_ 16786_S

source_name: Primary Breast Tumor_Patient ID_ 16786_S


title: Breast Cancer Array_Patient ID_ 16751_S

source_name: Primary Breast Tumor_Patient ID_ 16751_S


title: Breast Cancer Array_Patient ID_ 16842_S

source_name: Primary Breast Tumor_Patient ID_ 16842_S


title: Breast Cancer Array_Patient ID_ 16768_w2

source_name: Primary Breast Tumor_Patient ID_ 16768_w2


title: Breast Cancer Array_Patient ID_ 16727_w2

source_name: Primary Breast Tumor_Patient ID_ 16727_w2


title: Breast Cancer Array_Patient ID_ 16715_BL Redo

source_name: Primary Breast Tumor_Patient ID_ 16715_BL Redo


title: Breast Cancer Array_Patient ID_ 16598_S

source_name: Primary Breast Tumor_Patient ID_ 16598_S


title: Breast Cancer Array_Patient ID_ 16655_w2

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 16655_w2


title: Breast Cancer Array_Patient ID_ 16573_S

source_name: Primary Breast Tumor_Patient ID_ 16573_S


title: Breast Cancer Array_Patient ID_ 16715_S_Redo

source_name: Primary Breast Tumor_Patient ID_ 16715_S_Redo


title: Breast Cancer Array_Patient ID_ 16712_S

source_name: Primary Breast Tumor_Patient ID_ 16712_S


title: Breast Cancer Array_Patient ID_ 16895_S

source_name: Primary Breast Tumor_Patient ID_ 16895_S


title: Breast Cancer Array_Patient ID_ 16599_S

source_name: Primary Breast Tumor_Patient ID_ 16599_S


title: Breast Cancer Array_Patient ID_ 16590_S

source_name: Primary Breast Tumor_Patient ID_ 16590_S


title: Breast Cancer Array_Patient ID_ 16929_S

source_name: Primary Breast Tumor_Patient ID_ 16929_S


title: Breast Cancer Array_Patient ID_ 16569_S

source_name: Primary Breast Tumor_Patient ID_ 16569_S


title: Breast Cancer Array_Patient ID_ 16569_BL

source_name: Primary Breast Tumor_Patient ID_ 16569_BL


title: Breast Cancer Array_Patient ID_ 16577_M

source_name: Primary Breast Tumor_Patient ID_ 16577_M


title: Breast Cancer Array_Patient ID_ 16727_S

source_name: Primary Breast Tumor_Patient ID_ 16727_S


title: Breast Cancer Array_Patient ID_ 16545_BL

source_name: Primary Breast Tumor_Patient ID_ 16545_BL


title: Breast Cancer Array_Patient ID_ 16555_M

source_name: Primary Breast Tumor_Patient ID_ 16555_M


title: Breast Cancer Array_Patient ID_ 16542_BL

source_name: Primary Breast Tumor_Patient ID_ 16542_BL


title: Breast Cancer Array_Patient ID_ 16589_S

source_name: Primary Breast Tumor_Patient ID_ 16589_S


title: Breast Cancer Array_Patient ID_ 16566_S

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 16566_S


title: Breast Cancer Array_Patient ID_ 16540_M

source_name: Primary Breast Tumor_Patient ID_ 16540_M


title: Breast Cancer Array_Patient ID_ 16539_M

source_name: Primary Breast Tumor_Patient ID_ 16539_M


title: Breast Cancer Array_Patient ID_ 16540_S

source_name: Primary Breast Tumor_Patient ID_ 16540_S


title: Breast Cancer Array_Patient ID_ 16541_BL

source_name: Primary Breast Tumor_Patient ID_ 16541_BL


title: Breast Cancer Array_Patient ID_ 16529_S

source_name: Primary Breast Tumor_Patient ID_ 16529_S


title: Breast Cancer Array_Patient ID_ 16555_S

source_name: Primary Breast Tumor_Patient ID_ 16555_S


title: Breast Cancer Array_Patient ID_ 16560_S

source_name: Primary Breast Tumor_Patient ID_ 16560_S


title: Breast Cancer Array_Patient ID_ 16561_S

source_name: Primary Breast Tumor_Patient ID_ 16561_S


title: Breast Cancer Array_Patient ID_ 16539_BL [GSM829054]

source_name: Primary Breast Tumor_Patient ID_16539_BL


title: Breast Cancer Array_Patient ID_ 16525_S

source_name: Primary Breast Tumor_Patient ID_ 16525_S


title: Breast Cancer Array_Patient ID_ 16538_S

source_name: Primary Breast Tumor_Patient ID_ 16538_S


title: Breast Cancer Array_Patient ID_ 16490_S

source_name: Primary Breast Tumor_Patient ID_ 16490_S


title: Breast Cancer Array_Patient ID_ 16486_S

source_name: Primary Breast Tumor_Patient ID_ 16486_S


title: Breast Cancer Array_Patient ID_ 16442_S

source_name: Primary Breast Tumor_Patient ID_ 16442_S


title: Breast Cancer Array_Patient ID_ 16441_BL [GSM829047]

source_name: Primary Breast Tumor_Patient ID_16441_BL


title: Breast Cancer Array_Patient ID_ 16481_S

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 16481_S


title: Breast Cancer Array_Patient ID_ 16488_S

source_name: Primary Breast Tumor_Patient ID_ 16488_S


title: Breast Cancer Array_Patient ID_ 16438_M

source_name: Primary Breast Tumor_Patient ID_ 16438_M


title: Breast Cancer Array_Patient ID_ 16438_S

source_name: Primary Breast Tumor_Patient ID_ 16438_S


title: Breast Cancer Array_Patient ID_ 16450_BL [GSM829049]

source_name: Primary Breast Tumor_Patient ID_16450_BL


title: Breast Cancer Array_Patient ID_ 16434_S

source_name: Primary Breast Tumor_Patient ID_ 16434_S


title: Breast Cancer Array_Patient ID_ 16454_S

source_name: Primary Breast Tumor_Patient ID_ 16454_S


title: Breast Cancer Array_Patient ID_ 16435_BL

source_name: Primary Breast Tumor_Patient ID_ 16435_BL


title: Breast Cancer Array_Patient ID_ 16441_S

source_name: Primary Breast Tumor_Patient ID_ 16441_S


title: Breast Cancer Array_Patient ID_ 16425_S

source_name: Primary Breast Tumor_Patient ID_ 16425_S


title: Breast Cancer Array_Patient ID_ 16439_S

source_name: Primary Breast Tumor_Patient ID_ 16439_S


title: Breast Cancer Array_Patient ID_ 16414_BL

source_name: Primary Breast Tumor_Patient ID_ 16414_BL


title: Breast Cancer Array_Patient ID_ 16433_S

source_name: Primary Breast Tumor_Patient ID_ 16433_S


title: Breast Cancer Array_Patient ID_ 16408_S

source_name: Primary Breast Tumor_Patient ID_ 16408_S


title: Breast Cancer Array_Patient ID_ 16411_BL [GSM829045]

source_name: Primary Breast Tumor_Patient ID_16411_BL


title: Breast Cancer Array_Patient ID_ 16392_S

source_name: Primary Breast Tumor_Patient ID_ 16392_S


title: Breast Cancer Array_Patient ID_ 16396_S

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 16396_S


title: Breast Cancer Array_Patient ID_ 16376_S

source_name: Primary Breast Tumor_Patient ID_ 16376_S


title: Breast Cancer Array_Patient ID_ 16385_BL [GSM829041]

source_name: Primary Breast Tumor_Patient ID_16385_BL


title: Breast Cancer Array_Patient ID_ 16368_S

source_name: Primary Breast Tumor_Patient ID_ 16368_S


title: Breast Cancer Array_Patient ID_ 16357_S

source_name: Primary Breast Tumor_Patient ID_ 16357_S


title: Breast Cancer Array_Patient ID_ 16382_S

source_name: Primary Breast Tumor_Patient ID_ 16382_S


title: Breast Cancer Array_Patient ID_ 16365_S_Subtype Redo

source_name: Primary Breast Tumor_Patient ID_ 16365_S_Subtype Redo


title: Breast Cancer Array_Patient ID_ 16346_S

source_name: Primary Breast Tumor_Patient ID_ 16346_S


title: Breast Cancer Array_Patient ID_ 16411_S

source_name: Primary Breast Tumor_Patient ID_ 16411_S


title: Breast Cancer Array_Patient ID_ 16350_M

source_name: Primary Breast Tumor_Patient ID_ 16350_M


title: Breast Cancer Array_Patient ID_ 16431_S

source_name: Primary Breast Tumor_Patient ID_ 16431_S


title: Breast Cancer Array_Patient ID_ 16402_S

source_name: Primary Breast Tumor_Patient ID_ 16402_S


title: Breast Cancer Array_Patient ID_ 16337_BL [GSM829035]

source_name: Primary Breast Tumor_Patient ID_16337_BL


title: Breast Cancer Array_Patient ID_ 16335_BL

source_name: Primary Breast Tumor_Patient ID_ 16335_BL


title: Breast Cancer Array_Patient ID_ 16300_S

source_name: Primary Breast Tumor_Patient ID_ 16300_S


title: Breast Cancer Array_Patient ID_ 16324_S

source_name: Primary Breast Tumor_Patient ID_ 16324_S


title: Breast Cancer Array_Patient ID_ 16326_M

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 16326_M


title: Breast Cancer Array_Patient ID_ 16292_S

source_name: Primary Breast Tumor_Patient ID_ 16292_S


title: Breast Cancer Array_Patient ID_ 16319_S

source_name: Primary Breast Tumor_Patient ID_ 16319_S


title: Breast Cancer Array_Patient ID_ 16309_S

source_name: Primary Breast Tumor_Patient ID_ 16309_S


title: Breast Cancer Array_Patient ID_ 16309_BL [GSM829032]

source_name: Primary Breast Tumor_Patient ID_16309_BL


title: Breast Cancer Array_Patient ID_ 16306_BL

source_name: Primary Breast Tumor_Patient ID_ 16306_BL


title: Breast Cancer Array_Patient ID_ 16280_BL [GSM829027]

source_name: Primary Breast Tumor_Patient ID_16280_BL


title: Breast Cancer Array_Patient ID_ 16324_BL [GSM829034]

source_name: Primary Breast Tumor_Patient ID_16324_BL


title: Breast Cancer Array_Patient ID_ 16295_S_Redo

source_name: Primary Breast Tumor_Patient ID_ 16295_S_Redo


title: Breast Cancer Array_Patient ID_ 16314_S

source_name: Primary Breast Tumor_Patient ID_ 16314_S


title: Breast Cancer Array_Patient ID_ 16307_BL

source_name: Primary Breast Tumor_Patient ID_ 16307_BL


title: Breast Cancer Array_Patient ID_ 16270_S

source_name: Primary Breast Tumor_Patient ID_ 16270_S


title: Breast Cancer Array_Patient ID_ 16296_S

source_name: Primary Breast Tumor_Patient ID_ 16296_S


title: Breast Cancer Array_Patient ID_ 16296_BL [GSM829031]

source_name: Primary Breast Tumor_Patient ID_16296_BL


title: Breast Cancer Array_Patient ID_ 16313_S

source_name: Primary Breast Tumor_Patient ID_ 16313_S


title: Breast Cancer Array_Patient ID_ 16275_S

source_name: Primary Breast Tumor_Patient ID_ 16275_S


title: Breast Cancer Array_Patient ID_ 16256_S

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 16256_S


title: Breast Cancer Array_Patient ID_ 16252_S

source_name: Primary Breast Tumor_Patient ID_ 16252_S


title: Breast Cancer Array_Patient ID_ 16303_BL

source_name: Primary Breast Tumor_Patient ID_ 16303_BL


title: Breast Cancer Array_Patient ID_ 16269_BL

source_name: Primary Breast Tumor_Patient ID_ 16269_BL


title: Breast Cancer Array_Patient ID_ 16239_S

source_name: Primary Breast Tumor_Patient ID_ 16239_S


title: Breast Cancer Array_Patient ID_ 16247_S

source_name: Primary Breast Tumor_Patient ID_ 16247_S


title: Breast Cancer Array_Patient ID_ 16290_S

source_name: Primary Breast Tumor_Patient ID_ 16290_S


title: Breast Cancer Array_Patient ID_ 16237_S

source_name: Primary Breast Tumor_Patient ID_ 16237_S


title: Breast Cancer Array_Patient ID_ 16274_BL

source_name: Primary Breast Tumor_Patient ID_ 16274_BL


title: Breast Cancer Array_Patient ID_ 16239_BL

source_name: Primary Breast Tumor_Patient ID_ 16239_BL


title: Breast Cancer Array_Patient ID_ 16233_BL

source_name: Primary Breast Tumor_Patient ID_ 16233_BL


title: Breast Cancer Array_Patient ID_ 16242_BL

source_name: Primary Breast Tumor_Patient ID_ 16242_BL


title: Breast Cancer Array_Patient ID_ 16225_M

source_name: Primary Breast Tumor_Patient ID_ 16225_M


title: Breast Cancer Array_Patient ID_ 16224_S

source_name: Primary Breast Tumor_Patient ID_ 16224_S


title: Breast Cancer Array_Patient ID_ 16221_BL

source_name: Primary Breast Tumor_Patient ID_ 16221_BL


title: Breast Cancer Array_Patient ID_ 16217_S

source_name: Primary Breast Tumor_Patient ID_ 16217_S


title: Breast Cancer Array_Patient ID_ 16215_S

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 16215_S


title: Breast Cancer Array_Patient ID_ 16208_S

source_name: Primary Breast Tumor_Patient ID_ 16208_S


title: Breast Cancer Array_Patient ID_ 16202_4wk

source_name: Primary Breast Tumor_Patient ID_ 16202_4wk


title: Breast Cancer Array_Patient ID_ 16208_BL [GSM829021]

source_name: Primary Breast Tumor_Patient ID_16208_BL


title: Breast Cancer Array_Patient ID_ 16227_S

source_name: Primary Breast Tumor_Patient ID_ 16227_S


title: Breast Cancer Array_Patient ID_ 16185_BL

source_name: Primary Breast Tumor_Patient ID_ 16185_BL


title: Breast Cancer Array_Patient ID_ 16189_BL [GSM829020]

source_name: Primary Breast Tumor_Patient ID_16189_BL


title: Breast Cancer Array_Patient ID_ 16201_S

source_name: Primary Breast Tumor_Patient ID_ 16201_S


title: Breast Cancer Array_Patient ID_ 16193_BL

source_name: Primary Breast Tumor_Patient ID_ 16193_BL


title: Breast Cancer Array_Patient ID_ 16215_BL [GSM829022]

source_name: Primary Breast Tumor_Patient ID_16215_BL


title: Breast Cancer Array_Patient ID_ 16201_BL

source_name: Primary Breast Tumor_Patient ID_ 16201_BL


title: Breast Cancer Array_Patient ID_ 16135_S_Redo

source_name: Primary Breast Tumor_Patient ID_ 16135_S_Redo


title: Breast Cancer Array_Patient ID_ 16180_M

source_name: Primary Breast Tumor_Patient ID_ 16180_M


title: Breast Cancer Array_Patient ID_ 16148_S_Redo

source_name: Primary Breast Tumor_Patient ID_ 16148_S_Redo


title: Breast Cancer Array_Patient ID_ 16140_S

source_name: Primary Breast Tumor_Patient ID_ 16140_S


title: Breast Cancer Array_Patient ID_ 16174_S

source_name: Primary Breast Tumor_Patient ID_ 16174_S


title: Breast Cancer Array_Patient ID_ 16125_S

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 16125_S


title: Breast Cancer Array_Patient ID_ 16170_S

source_name: Primary Breast Tumor_Patient ID_ 16170_S


title: Breast Cancer Array_Patient ID_ 16127_S

source_name: Primary Breast Tumor_Patient ID_ 16127_S


title: Breast Cancer Array_Patient ID_ 16128_BL

source_name: Primary Breast Tumor_Patient ID_ 16128_BL


title: Breast Cancer Array_Patient ID_ 16163_S

source_name: Primary Breast Tumor_Patient ID_ 16163_S


title: Breast Cancer Array_Patient ID_ 16136_S_NR

source_name: Primary Breast Tumor_Patient ID_ 16136_S_NR


title: Breast Cancer Array_Patient ID_ 16178_S

source_name: Primary Breast Tumor_Patient ID_ 16178_S


title: Breast Cancer Array_Patient ID_ 16179_S

source_name: Primary Breast Tumor_Patient ID_ 16179_S


title: Breast Cancer Array_Patient ID_ 16179_BL

source_name: Primary Breast Tumor_Patient ID_ 16179_BL


title: Breast Cancer Array_Patient ID_ 16139_BL [GSM829015]

source_name: Primary Breast Tumor_Patient ID_16139_BL


title: Breast Cancer Array_Patient ID_ 16122_BL [GSM829011]

source_name: Primary Breast Tumor_Patient ID_16122_BL


title: Breast Cancer Array_Patient ID_ 16165_S_Redo

source_name: Primary Breast Tumor_Patient ID_ 16165_S_Redo


title: Breast Cancer Array_Patient ID_ 16109_BL

source_name: Primary Breast Tumor_Patient ID_ 16109_BL


title: Breast Cancer Array_Patient ID_ 16107_S_REDO

source_name: Primary Breast Tumor_Patient ID_ 16107_S_REDO


title: Breast Cancer Array_Patient ID_ 16104_S

source_name: Primary Breast Tumor_Patient ID_ 16104_S


title: Breast Cancer Array_Patient ID_ 16108_BL

source_name: Primary Breast Tumor_Patient ID_ 16108_BL


title: Breast Cancer Array_Patient ID_ 16092_S

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 16092_S


title: Breast Cancer Array_Patient ID_ 16111_S

source_name: Primary Breast Tumor_Patient ID_ 16111_S


title: Breast Cancer Array_Patient ID_ 16101_BL [GSM829009]

source_name: Primary Breast Tumor_Patient ID_16101_BL


title: Breast Cancer Array_Patient ID_ 16091_BL [GSM829005]

source_name: Primary Breast Tumor_Patient ID_16091_BL


title: Breast Cancer Array_Patient ID_ 16100_BL

source_name: Primary Breast Tumor_Patient ID_ 16100_BL


title: Breast Cancer Array_Patient ID_ 16099_S

source_name: Primary Breast Tumor_Patient ID_ 16099_S


title: Breast Cancer Array_Patient ID_ 16083_BL

source_name: Primary Breast Tumor_Patient ID_ 16083_BL


title: Breast Cancer Array_Patient ID_ 16101_S

source_name: Primary Breast Tumor_Patient ID_ 16101_S


title: Breast Cancer Array_Patient ID_ 16084_S

source_name: Primary Breast Tumor_Patient ID_ 16084_S


title: Breast Cancer Array_Patient ID_ 16082_S_Redo

source_name: Primary Breast Tumor_Patient ID_ 16082_S_Redo


title: Breast Cancer Array_Patient ID_ 16082_BL [GSM829003]

source_name: Primary Breast Tumor_Patient ID_16082_BL


title: Breast Cancer Array_Patient ID_ 16075_M

source_name: Primary Breast Tumor_Patient ID_ 16075_M


title: Breast Cancer Array_Patient ID_ 16064_S

source_name: Primary Breast Tumor_Patient ID_ 16064_S


title: Breast Cancer Array_Patient ID_ 16041_S

source_name: Primary Breast Tumor_Patient ID_ 16041_S


title: Breast Cancer Array_Patient ID_ 16069_S

source_name: Primary Breast Tumor_Patient ID_ 16069_S


title: Breast Cancer Array_Patient ID_ 16062_S

source_name: Primary Breast Tumor_Patient ID_ 16062_S


title: Breast Cancer Array_Patient ID_ 16075_S

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 16075_S


title: Breast Cancer Array_Patient ID_ 16031_S

source_name: Primary Breast Tumor_Patient ID_ 16031_S


title: Breast Cancer Array_Patient ID_ 16063_S

source_name: Primary Breast Tumor_Patient ID_ 16063_S


title: Breast Cancer Array_Patient ID_ 16075_BL

source_name: Primary Breast Tumor_Patient ID_ 16075_BL


title: Breast Cancer Array_Patient ID_ 16040_BL

source_name: Primary Breast Tumor_Patient ID_ 16040_BL


title: Breast Cancer Array_Patient ID_ 16067_S

source_name: Primary Breast Tumor_Patient ID_ 16067_S


title: Breast Cancer Array_Patient ID_ 15985_M_Subtype Redo

source_name: Primary Breast Tumor_Patient ID_ 15985_M_Subtype Redo


title: Breast Cancer Array_Patient ID_ 16042_S_Redo

source_name: Primary Breast Tumor_Patient ID_ 16042_S_Redo


title: Breast Cancer Array_Patient ID_ 16033_S

source_name: Primary Breast Tumor_Patient ID_ 16033_S


title: Breast Cancer Array_Patient ID_ 16021_BL [GSM828991]

source_name: Primary Breast Tumor_Patient ID_16021_BL


title: Breast Cancer Array_Patient ID_ 16025_S

source_name: Primary Breast Tumor_Patient ID_ 16025_S


title: Breast Cancer Array_Patient ID_ 15995_S

source_name: Primary Breast Tumor_Patient ID_ 15995_S


title: Breast Cancer Array_Patient ID_ 16026_BL_Subtype Redo

source_name: Primary Breast Tumor_Patient ID_ 16026_BL_Subtype Redo


title: Breast Cancer Array_Patient ID_ 16016_S

source_name: Primary Breast Tumor_Patient ID_ 16016_S


title: Breast Cancer Array_Patient ID_ 16010_S

source_name: Primary Breast Tumor_Patient ID_ 16010_S


title: Breast Cancer Array_Patient ID_ 16020_S

source_name: Primary Breast Tumor_Patient ID_ 16020_S


title: Breast Cancer Array_Patient ID_ 15978_S

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 15978_S


title: Breast Cancer Array_Patient ID_ 15992_BL

source_name: Primary Breast Tumor_Patient ID_ 15992_BL


title: Breast Cancer Array_Patient ID_ 15998_S

source_name: Primary Breast Tumor_Patient ID_ 15998_S


title: Breast Cancer Array_Patient ID_ 16009_BL

source_name: Primary Breast Tumor_Patient ID_ 16009_BL


title: Breast Cancer Array_Patient ID_ 15978_BL [GSM828988]

source_name: Primary Breast Tumor_Patient ID_15978_BL


title: Breast Cancer Array_Patient ID_ 15977_S

source_name: Primary Breast Tumor_Patient ID_ 15977_S


title: Breast Cancer Array_Patient ID_ 15983_S

source_name: Primary Breast Tumor_Patient ID_ 15983_S


title: Breast Cancer Array_Patient ID_ 16021_S

source_name: Primary Breast Tumor_Patient ID_ 16021_S


title: Breast Cancer Array_Patient ID_ 16030_S

source_name: Primary Breast Tumor_Patient ID_ 16030_S


title: Breast Cancer Array_Patient ID_ 15931_S

source_name: Primary Breast Tumor_Patient ID_ 15931_S


title: Breast Cancer Array_Patient ID_ 15934_BL

source_name: Primary Breast Tumor_Patient ID_ 15934_BL


title: Breast Cancer Array_Patient ID_ 15975_S

source_name: Primary Breast Tumor_Patient ID_ 15975_S


title: Breast Cancer Array_Patient ID_ 15945_S

source_name: Primary Breast Tumor_Patient ID_ 15945_S


title: Breast Cancer Array_Patient ID_ 15928_BL [GSM828982]

source_name: Primary Breast Tumor_Patient ID_15928_BL


title: Breast Cancer Array_Patient ID_ 15973_S

source_name: Primary Breast Tumor_Patient ID_ 15973_S


title: Breast Cancer Array_Patient ID_ 15941_S

source_name: Primary Breast Tumor_Patient ID_ 15941_S


title: Breast Cancer Array_Patient ID_ 15967_BL

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 15967_BL


title: Breast Cancer Array_Patient ID_ 15968_BL [GSM828985]

source_name: Primary Breast Tumor_Patient ID_15968_BL


title: Breast Cancer Array_Patient ID_ 15919_S

source_name: Primary Breast Tumor_Patient ID_ 15919_S


title: Breast Cancer Array_Patient ID_ 15959_S

source_name: Primary Breast Tumor_Patient ID_ 15959_S


title: Breast Cancer Array_Patient ID_ 15909_BL

source_name: Primary Breast Tumor_Patient ID_ 15909_BL


title: Breast Cancer Array_Patient ID_ 15930_BL

source_name: Primary Breast Tumor_Patient ID_ 15930_BL


title: Breast Cancer Array_Patient ID_ 15970_S

source_name: Primary Breast Tumor_Patient ID_ 15970_S


title: Breast Cancer Array_Patient ID_ 15903_BL

source_name: Primary Breast Tumor_Patient ID_ 15903_BL


title: Breast Cancer Array_Patient ID_ 15901_S

source_name: Primary Breast Tumor_Patient ID_ 15901_S


title: Breast Cancer Array_Patient ID_ 15906_S

source_name: Primary Breast Tumor_Patient ID_ 15906_S


title: Breast Cancer Array_Patient ID_ 15919_BL [GSM828980]

source_name: Primary Breast Tumor_Patient ID_15919_BL


title: Breast Cancer Array_Patient ID_ 15954_BL

source_name: Primary Breast Tumor_Patient ID_ 15954_BL


title: Breast Cancer Array_Patient ID_ 15897_BL [GSM828976]

source_name: Primary Breast Tumor_Patient ID_15897_BL


title: Breast Cancer Array_Patient ID_ 15897_S

source_name: Primary Breast Tumor_Patient ID_ 15897_S


title: Breast Cancer Array_Patient ID_ 15932_BL

source_name: Primary Breast Tumor_Patient ID_ 15932_BL


title: Breast Cancer Array_Patient ID_ 15932_S

source_name: Primary Breast Tumor_Patient ID_ 15932_S


title: Breast Cancer Array_Patient ID_ 16026_S

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 16026_S


title: Breast Cancer Array_Patient ID_ 15906_BL_Redo

source_name: Primary Breast Tumor_Patient ID_ 15906_BL_Redo


title: Breast Cancer Array_Patient ID_ 15928_S

source_name: Primary Breast Tumor_Patient ID_ 15928_S


title: Breast Cancer Array_Patient ID_ 15917_S

source_name: Primary Breast Tumor_Patient ID_ 15917_S


title: Breast Cancer Array_Patient ID_ 15899_BL [GSM828977]

source_name: Primary Breast Tumor_Patient ID_15899_BL


title: Breast Cancer Array_Patient ID_ 15903_S

source_name: Primary Breast Tumor_Patient ID_ 15903_S


title: Breast Cancer Array_Patient ID_ 15881_S

source_name: Primary Breast Tumor_Patient ID_ 15881_S


title: Breast Cancer Array_Patient ID_ 15887_S

source_name: Primary Breast Tumor_Patient ID_ 15887_S


title: Breast Cancer Array_Patient ID_ 15875_BL

source_name: Primary Breast Tumor_Patient ID_ 15875_BL


title: Breast Cancer Array_Patient ID_ 15894_S

source_name: Primary Breast Tumor_Patient ID_ 15894_S


title: Breast Cancer Array_Patient ID_ 15867_S Redo

source_name: Primary Breast Tumor_Patient ID_ 15867_S Redo


title: Breast Cancer Array_Patient ID_ 15892_S

source_name: Primary Breast Tumor_Patient ID_ 15892_S


title: Breast Cancer Array_Patient ID_ 15897_M

source_name: Primary Breast Tumor_Patient ID_ 15897_M


title: Breast Cancer Array_Patient ID_ 15868_S

source_name: Primary Breast Tumor_Patient ID_ 15868_S


title: Breast Cancer Array_Patient ID_ 15879_S

source_name: Primary Breast Tumor_Patient ID_ 15879_S


title: Breast Cancer Array_Patient ID_ 15880_BL [GSM828972]

source_name: Primary Breast Tumor_Patient ID_15880_BL


title: Breast Cancer Array_Patient ID_ 15881_BL [GSM828973]

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_15881_BL


title: Breast Cancer Array_Patient ID_ 15849_S

source_name: Primary Breast Tumor_Patient ID_ 15849_S


title: Breast Cancer Array_Patient ID_ 15849_M

source_name: Primary Breast Tumor_Patient ID_ 15849_M


title: Breast Cancer Array_Patient ID_ 15868_BL [GSM828971]

source_name: Primary Breast Tumor_Patient ID_15868_BL


title: Breast Cancer Array_Patient ID_ 15860_BL

source_name: Primary Breast Tumor_Patient ID_ 15860_BL


title: Breast Cancer Array_Patient ID_ 15843_S

source_name: Primary Breast Tumor_Patient ID_ 15843_S


title: Breast Cancer Array_Patient ID_ 15856_BL

source_name: Primary Breast Tumor_Patient ID_ 15856_BL


title: Breast Cancer Array_Patient ID_ 15849_BL

source_name: Primary Breast Tumor_Patient ID_ 15849_BL


title: Breast Cancer Array_Patient ID_ 15843_BL

source_name: Primary Breast Tumor_Patient ID_ 15843_BL


title: Breast Cancer Array_Patient ID_ 15840_S

source_name: Primary Breast Tumor_Patient ID_ 15840_S


title: Breast Cancer Array_Patient ID_ 15830_S

source_name: Primary Breast Tumor_Patient ID_ 15830_S


title: Breast Cancer Array_Patient ID_ 15835_BL [GSM828965]

source_name: Primary Breast Tumor_Patient ID_15835_BL


title: Breast Cancer Array_Patient ID_ 15838_S_Redo

source_name: Primary Breast Tumor_Patient ID_ 15838_S_Redo


title: Breast Cancer Array_Patient ID_ 15840_BL [GSM828967]

source_name: Primary Breast Tumor_Patient ID_15840_BL


title: Breast Cancer Array_Patient ID_ 15819_S

source_name: Primary Breast Tumor_Patient ID_ 15819_S


title: Breast Cancer Array_Patient ID_ 15829_S

source_name: Primary Breast Tumor_Patient ID_ 15829_S


title: Breast Cancer Array_Patient ID_ 15826_BL [GSM828961]

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_15826_BL


title: Breast Cancer Array_Patient ID_ 15819_BL

source_name: Primary Breast Tumor_Patient ID_ 15819_BL


title: Breast Cancer Array_Patient ID_ 15812_BL [GSM828959]

source_name: Primary Breast Tumor_Patient ID_15812_BL


title: Breast Cancer Array_Patient ID_ 15809_BL

source_name: Primary Breast Tumor_Patient ID_ 15809_BL


title: Breast Cancer Array_Patient ID_ 15804_BL

source_name: Primary Breast Tumor_Patient ID_ 15804_BL


title: Breast Cancer Array_Patient ID_ 15804_S

source_name: Primary Breast Tumor_Patient ID_ 15804_S


title: Breast Cancer Array_Patient ID_ 15800_S

source_name: Primary Breast Tumor_Patient ID_ 15800_S


title: Breast Cancer Array_Patient ID_ 15799_S

source_name: Primary Breast Tumor_Patient ID_ 15799_S


title: Breast Cancer Array_Patient ID_ 15765_BL [GSM828954]

source_name: Primary Breast Tumor_Patient ID_15765_BL


title: Breast Cancer Array_Patient ID_ 15780_S_Redo

source_name: Primary Breast Tumor_Patient ID_ 15780_S_Redo


title: Breast Cancer Array_Patient ID_ 15773_S

source_name: Primary Breast Tumor_Patient ID_ 15773_S


title: Breast Cancer Array_Patient ID_ 15800_BL [GSM828958]

source_name: Primary Breast Tumor_Patient ID_15800_BL


title: Breast Cancer Array_Patient ID_ 15790_S

source_name: Primary Breast Tumor_Patient ID_ 15790_S


title: Breast Cancer Array_Patient ID_ 15790_BL

source_name: Primary Breast Tumor_Patient ID_ 15790_BL


title: Breast Cancer Array_Patient ID_ 15797_S_Subtype Redo

source_name: Primary Breast Tumor_Patient ID_ 15797_S_Subtype Redo


title: Breast Cancer Array_Patient ID_ 15764_S

source_name: Primary Breast Tumor_Patient ID_ 15764_S


title: Breast Cancer Array_Patient ID_ 15776_S

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 15776_S


title: Breast Cancer Array_Patient ID_ 15750_S_Redo

source_name: Primary Breast Tumor_Patient ID_ 15750_S_Redo


title: Breast Cancer Array_Patient ID_ 15777_BL

source_name: Primary Breast Tumor_Patient ID_ 15777_BL


title: Breast Cancer Array_Patient ID_ 15765_S

source_name: Primary Breast Tumor_Patient ID_ 15765_S


title: Breast Cancer Array_Patient ID_ 15750_BL [GSM828952]

source_name: Primary Breast Tumor_Patient ID_15750_BL


title: Breast Cancer Array_Patient ID_ 15715_S

source_name: Primary Breast Tumor_Patient ID_ 15715_S


title: Breast Cancer Array_Patient ID_ 15721_BL

source_name: Primary Breast Tumor_Patient ID_ 15721_BL


title: Breast Cancer Array_Patient ID_ 15816_S

source_name: Primary Breast Tumor_Patient ID_ 15816_S


title: Breast Cancer Array_Patient ID_ 15710_BL [GSM828950]

source_name: Primary Breast Tumor_Patient ID_15710_BL


title: Breast Cancer Array_Patient ID_ 15703_BL [GSM828948]

source_name: Primary Breast Tumor_Patient ID_15703_BL


title: Breast Cancer Array_Patient ID_ 15714_Subtype_Redo_S

source_name: Primary Breast Tumor_Patient ID_ 15714_Subtype_Redo_S


title: Breast Cancer Array_Patient ID_ 15703_S_Subtype Redo

source_name: Primary Breast Tumor_Patient ID_ 15703_S_Subtype Redo


title: Breast Cancer Array_Patient ID_ 15696_BL [GSM828947]

source_name: Primary Breast Tumor_Patient ID_15696_BL


title: Breast Cancer Array_Patient ID_ 15687_S

source_name: Primary Breast Tumor_Patient ID_ 15687_S


title: Breast Cancer Array_Patient ID_ 15770_S

source_name: Primary Breast Tumor_Patient ID_ 15770_S


title: Breast Cancer Array_Patient ID_ 15690_S

source_name: Primary Breast Tumor_Patient ID_ 15690_S


title: Breast Cancer Array_Patient ID_ 15709_S

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 15709_S


title: Breast Cancer Array_Patient ID_ 15687_M

source_name: Primary Breast Tumor_Patient ID_ 15687_M


title: Breast Cancer Array_Patient ID_ 15709_BL [GSM828949]

source_name: Primary Breast Tumor_Patient ID_15709_BL


title: Breast Cancer Array_Patient ID_ 15683_S

source_name: Primary Breast Tumor_Patient ID_ 15683_S


title: Breast Cancer Array_Patient ID_ 15682_S_REDO

source_name: Primary Breast Tumor_Patient ID_ 15682_S_REDO


title: Breast Cancer Array_Patient ID_ 15628_S

source_name: Primary Breast Tumor_Patient ID_ 15628_S


title: Breast Cancer Array_Patient ID_ 15682_BL_REDO [GSM828945]

source_name: Primary Breast Tumor_Patient ID_15682_BL_REDO


title: Breast Cancer Array_Patient ID_ 15669_S_Subtype REDO

source_name: Primary Breast Tumor_Patient ID_ 15669_S_Subtype REDO


title: Breast Cancer Array_Patient ID_ 15655_BL [GSM828940]

source_name: Primary Breast Tumor_Patient ID_15655_BL


title: Breast Cancer Array_Patient ID_ 15675_BL_REDO [GSM828943]

source_name: Primary Breast Tumor_Patient ID_15675_BL_REDO


title: Breast Cancer Array_Patient ID_ 15666_S

source_name: Primary Breast Tumor_Patient ID_ 15666_S


title: Breast Cancer Array_Patient ID_ 15653_BL_REDO

source_name: Primary Breast Tumor_Patient ID_ 15653_BL_REDO


title: Breast Cancer Array_Patient ID_ 15670_M

source_name: Primary Breast Tumor_Patient ID_ 15670_M


title: Breast Cancer Array_Patient ID_ 15619_S

source_name: Primary Breast Tumor_Patient ID_ 15619_S


title: Breast Cancer Array_Patient ID_ 15665_S

source_name: Primary Breast Tumor_Patient ID_ 15665_S


title: Breast Cancer Array_Patient ID_ 15676_S

source_name: Primary Breast Tumor_Patient ID_ 15676_S


title: Breast Cancer Array_Patient ID_ 15683_BL [GSM828946]

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_15683_BL


title: Breast Cancer Array_Patient ID_ 15619_BL

source_name: Primary Breast Tumor_Patient ID_ 15619_BL


title: Breast Cancer Array_Patient ID_ 15583_S_REDO

source_name: Primary Breast Tumor_Patient ID_ 15583_S_REDO


title: Breast Cancer Array_Patient ID_ 15613_BL

source_name: Primary Breast Tumor_Patient ID_ 15613_BL


title: Breast Cancer Array_Patient ID_ 15637_BL

source_name: Primary Breast Tumor_Patient ID_ 15637_BL


title: Breast Cancer Array_Patient ID_ 15675_S_REDO

source_name: Primary Breast Tumor_Patient ID_ 15675_S_REDO


title: Breast Cancer Array_Patient ID_ 15595_S

source_name: Primary Breast Tumor_Patient ID_ 15595_S


title: Breast Cancer Array_Patient ID_ 15601_S_REDO

source_name: Primary Breast Tumor_Patient ID_ 15601_S_REDO


title: Breast Cancer Array_Patient ID_ 15670_BL

source_name: Primary Breast Tumor_Patient ID_ 15670_BL


title: Breast Cancer Array_Patient ID_ 15578_S

source_name: Primary Breast Tumor_Patient ID_ 15578_S


title: Breast Cancer Array_Patient ID_ 15628_BL [GSM828938]

source_name: Primary Breast Tumor_Patient ID_15628_BL


title: Breast Cancer Array_Patient ID_ 15653_S_REDO

source_name: Primary Breast Tumor_Patient ID_ 15653_S_REDO


title: Breast Cancer Array_Patient ID_ 15577_BL [GSM828936]

source_name: Primary Breast Tumor_Patient ID_15577_BL


title: Breast Cancer Array_Patient ID_ 15574_S

source_name: Primary Breast Tumor_Patient ID_ 15574_S


title: Breast Cancer Array_Patient ID_ 15577_S

source_name: Primary Breast Tumor_Patient ID_ 15577_S


title: Breast Cancer Array_Patient ID_ 15571_S

source_name: Primary Breast Tumor_Patient ID_ 15571_S


title: Breast Cancer Array_Patient ID_ 15569_S

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 15569_S


title: Breast Cancer Array_Patient ID_ 15569_BL [GSM828933]

source_name: Primary Breast Tumor_Patient ID_15569_BL


title: Breast Cancer Array_Patient ID_ 15557_S

source_name: Primary Breast Tumor_Patient ID_ 15557_S


title: Breast Cancer Array_Patient ID_ 15530_BL [GSM828928]

source_name: Primary Breast Tumor_Patient ID_15530_BL


title: Breast Cancer Array_Patient ID_ 15547_S

source_name: Primary Breast Tumor_Patient ID_ 15547_S


title: Breast Cancer Array_Patient ID_ 15507_BL

source_name: Primary Breast Tumor_Patient ID_ 15507_BL


title: Breast Cancer Array_Patient ID_ 841_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 841_M


title: Breast Cancer Array_Patient ID_ 15521_BL [GSM828927]

source_name: Primary Breast Tumor_Patient ID_15521_BL


title: Breast Cancer Array_Patient ID_ 842_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 842_S


title: Breast Cancer Array_Patient ID_ 15536_BL [GSM828929]

source_name: Primary Breast Tumor_Patient ID_15536_BL


title: Breast Cancer Array_Patient ID_ 842_BL

description: POL

source_name: Primary Breast Tumor_Patient ID_ 842_BL


title: Breast Cancer Array_Patient ID_ 838_BL [GSM828920]

description: POL

source_name: Primary Breast Tumor_Patient ID_838_BL


title: Breast Cancer Array_Patient ID_ 15445_S

source_name: Primary Breast Tumor_Patient ID_ 15445_S


title: Breast Cancer Array_Patient ID_ 840_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 840_S


title: Breast Cancer Array_Patient ID_ 15510_BL [GSM828926]

source_name: Primary Breast Tumor_Patient ID_15510_BL


title: Breast Cancer Array_Patient ID_ 834_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 834_M


title: Breast Cancer Array_Patient ID_ 15477_S_Redo

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 15477_S_Redo


title: Breast Cancer Array_Patient ID_ 15478_BL

source_name: Primary Breast Tumor_Patient ID_ 15478_BL


title: Breast Cancer Array_Patient ID_ 830_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 830_S


title: Breast Cancer Array_Patient ID_ 15520_BL

source_name: Primary Breast Tumor_Patient ID_ 15520_BL


title: Breast Cancer Array_Patient ID_ 15462_S

source_name: Primary Breast Tumor_Patient ID_ 15462_S


title: Breast Cancer Array_Patient ID_ 842_M_Redo

description: POL

source_name: Primary Breast Tumor_Patient ID_ 842_M_Redo


title: Breast Cancer Array_Patient ID_ 830_M_Redo

description: POL

source_name: Primary Breast Tumor_Patient ID_ 830_M_Redo


title: Breast Cancer Array_Patient ID_ 837_M_Redo

description: POL

source_name: Primary Breast Tumor_Patient ID_ 837_M_Redo


title: Breast Cancer Array_Patient ID_ 834_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 834_S


title: Breast Cancer Array_Patient ID_ 15547_M

source_name: Primary Breast Tumor_Patient ID_ 15547_M


title: Breast Cancer Array_Patient ID_ 835_M_Redo

description: POL

source_name: Primary Breast Tumor_Patient ID_ 835_M_Redo


title: Breast Cancer Array_Patient ID_ 833_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 833_M


title: Breast Cancer Array_Patient ID_ 838_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 838_M


title: Breast Cancer Array_Patient ID_ 830_BL [GSM828918]

description: POL

source_name: Primary Breast Tumor_Patient ID_830_BL


title: Breast Cancer Array_Patient ID_ 826_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 826_M


title: Breast Cancer Array_Patient ID_ 823_M_Redo

description: POL

source_name: Primary Breast Tumor_Patient ID_ 823_M_Redo


title: Breast Cancer Array_Patient ID_ 821_S

description: POL

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 821_S


title: Breast Cancer Array_Patient ID_ 829_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 829_S


title: Breast Cancer Array_Patient ID_ 827_BL [GSM828916]

description: POL

source_name: Primary Breast Tumor_Patient ID_827_BL


title: Breast Cancer Array_Patient ID_ 821_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 821_M


title: Breast Cancer Array_Patient ID_ 824_BL [GSM828914]

description: POL

source_name: Primary Breast Tumor_Patient ID_824_BL


title: Breast Cancer Array_Patient ID_ 824_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 824_M


title: Breast Cancer Array_Patient ID_ 821_BL

description: POL

source_name: Primary Breast Tumor_Patient ID_ 821_BL


title: Breast Cancer Array_Patient ID_ 819_BL

description: POL

source_name: Primary Breast Tumor_Patient ID_ 819_BL


title: Breast Cancer Array_Patient ID_ 820_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 820_S


title: Breast Cancer Array_Patient ID_ 822_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 822_M


title: Breast Cancer Array_Patient ID_ 819_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 819_M


title: Breast Cancer Array_Patient ID_ 824_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 824_S


title: Breast Cancer Array_Patient ID_ 816_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 816_M


title: Breast Cancer Array_Patient ID_ 812_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 812_M


title: Breast Cancer Array_Patient ID_ 15565_S

source_name: Primary Breast Tumor_Patient ID_ 15565_S


title: Breast Cancer Array_Patient ID_ 818_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 818_M


title: Breast Cancer Array_Patient ID_ 816_BL [GSM828910]

description: POL

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_816_BL


title: Breast Cancer Array_Patient ID_ 815_BL

description: POL

source_name: Primary Breast Tumor_Patient ID_ 815_BL


title: Breast Cancer Array_Patient ID_ 813_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 813_M


title: Breast Cancer Array_Patient ID_ 828_M_Redo

description: POL

source_name: Primary Breast Tumor_Patient ID_ 828_M_Redo


title: Breast Cancer Array_Patient ID_ 813_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 813_S


title: Breast Cancer Array_Patient ID_ 829_M_Redo

description: POL

source_name: Primary Breast Tumor_Patient ID_ 829_M_Redo


title: Breast Cancer Array_Patient ID_ 814_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 814_M


title: Breast Cancer Array_Patient ID_ 817_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 817_M


title: Breast Cancer Array_Patient ID_ 814_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 814_S


title: Breast Cancer Array_Patient ID_ 817_BL [GSM828911]

description: POL

source_name: Primary Breast Tumor_Patient ID_817_BL


title: Breast Cancer Array_Patient ID_ 811_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 811_M


title: Breast Cancer Array_Patient ID_ 810_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 810_M


title: Breast Cancer Array_Patient ID_ 810_BL [GSM828909]

description: POL

source_name: Primary Breast Tumor_Patient ID_810_BL


title: Breast Cancer Array_Patient ID_ 808_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 808_M


title: Breast Cancer Array_Patient ID_ 802_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 802_M


title: Breast Cancer Array_Patient ID_ 801_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 801_M


title: Breast Cancer Array_Patient ID_ 702_S

description: POL

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 702_S


title: Breast Cancer Array_Patient ID_ 804_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 804_M


title: Breast Cancer Array_Patient ID_ 802_BL

description: POL

source_name: Primary Breast Tumor_Patient ID_ 802_BL


title: Breast Cancer Array_Patient ID_ 807_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 807_M


title: Breast Cancer Array_Patient ID_ 803_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 803_S


title: Breast Cancer Array_Patient ID_ 703_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 703_M


title: Breast Cancer Array_Patient ID_ 805_BL [GSM828907]

description: POL

source_name: Primary Breast Tumor_Patient ID_805_BL


title: Breast Cancer Array_Patient ID_ 511_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 511_S


title: Breast Cancer Array_Patient ID_ 506_BL Subtype Redo

description: POL

source_name: Primary Breast Tumor_Patient ID_ 506_BL Subtype Redo


title: Breast Cancer Array_Patient ID_ 805_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 805_M


title: Breast Cancer Array_Patient ID_ 702_BL [GSM828904]

description: POL

source_name: Primary Breast Tumor_Patient ID_702_BL


title: Breast Cancer Array_Patient ID_ 802_OS

description: POL

source_name: Primary Breast Tumor_Patient ID_ 802_OS


title: Breast Cancer Array_Patient ID_ 507_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 507_M


title: Breast Cancer Array_Patient ID_ 502_BL

description: POL

source_name: Primary Breast Tumor_Patient ID_ 502_BL


title: Breast Cancer Array_Patient ID_ 703_BL [GSM828905]

description: POL

source_name: Primary Breast Tumor_Patient ID_703_BL


title: Breast Cancer Array_Patient ID_ 509_M_Redo

description: POL

source_name: Primary Breast Tumor_Patient ID_ 509_M_Redo


title: Breast Cancer Array_Patient ID_ 508_M

description: POL

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 508_M


title: Breast Cancer Array_Patient ID_ 502_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 502_M


title: Breast Cancer Array_Patient ID_ 415_BL [GSM828901]

description: POL

source_name: Primary Breast Tumor_Patient ID_415_BL


title: Breast Cancer Array_Patient ID_ 413_BL

description: POL

source_name: Primary Breast Tumor_Patient ID_ 413_BL


title: Breast Cancer Array_Patient ID_ 412_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 412_M


title: Breast Cancer Array_Patient ID_ 413_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 413_M


title: Breast Cancer Array_Patient ID_ 511_BL

description: POL

source_name: Primary Breast Tumor_Patient ID_ 511_BL


title: Breast Cancer Array_Patient ID_ 411_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 411_M


title: Breast Cancer Array_Patient ID_ 409_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 409_S


title: Breast Cancer Array_Patient ID_ 409_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 409_M


title: Breast Cancer Array_Patient ID_ 507_BL [GSM828902]

description: POL

source_name: Primary Breast Tumor_Patient ID_507_BL


title: Breast Cancer Array_Patient ID_ 406_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 406_M


title: Breast Cancer Array_Patient ID_ 406_BL

description: POL

source_name: Primary Breast Tumor_Patient ID_ 406_BL


title: Breast Cancer Array_Patient ID_ 402_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 402_S


title: Breast Cancer Array_Patient ID_ 305_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 305_S


title: Breast Cancer Array_Patient ID_ 15460_S

source_name: Primary Breast Tumor_Patient ID_ 15460_S


title: Breast Cancer Array_Patient ID_ 308_M

description: POL

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 308_M


title: Breast Cancer Array_Patient ID_ 309_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 309_M


title: Breast Cancer Array_Patient ID_ 305_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 305_M


title: Breast Cancer Array_Patient ID_ 302_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 302_S


title: Breast Cancer Array_Patient ID_ 306_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 306_S


title: Breast Cancer Array_Patient ID_ 401_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 401_S


title: Breast Cancer Array_Patient ID_ 303_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 303_M


title: Breast Cancer Array_Patient ID_ 205_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 205_M


title: Breast Cancer Array_Patient ID_ 208_BL [GSM828894]

description: POL

source_name: Primary Breast Tumor_Patient ID_208_BL


title: Breast Cancer Array_Patient ID_ 201_M_32870

description: POL

source_name: Primary Breast Tumor_Patient ID_ 201_M_32870


title: Breast Cancer Array_Patient ID_ 402_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 402_M


title: Breast Cancer Array_Patient ID_ 305_BL

description: POL

source_name: Primary Breast Tumor_Patient ID_ 305_BL


title: Breast Cancer Array_Patient ID_ 307_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 307_M


title: Breast Cancer Array_Patient ID_ 207_BL

description: POL

source_name: Primary Breast Tumor_Patient ID_ 207_BL


title: Breast Cancer Array_Patient ID_ 123_BL [GSM828892]

description: POL

source_name: Primary Breast Tumor_Patient ID_123_BL


title: Breast Cancer Array_Patient ID_ 123_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 123_S


title: Breast Cancer Array_Patient ID_ 302_M

description: POL

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 302_M


title: Breast Cancer Array_Patient ID_ 302_BL [GSM828895]

description: POL

source_name: Primary Breast Tumor_Patient ID_302_BL


title: Breast Cancer Array_Patient ID_ 125_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 125_M


title: Breast Cancer Array_Patient ID_ 203_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 203_M


title: Breast Cancer Array_Patient ID_ 303_BL [GSM828896]

description: POL

source_name: Primary Breast Tumor_Patient ID_303_BL


title: Breast Cancer Array_Patient ID_ 124_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 124_M


title: Breast Cancer Array_Patient ID_ 124_BL

description: POL

source_name: Primary Breast Tumor_Patient ID_ 124_BL


title: Breast Cancer Array_Patient ID_ 201_M_32868

description: POL

source_name: Primary Breast Tumor_Patient ID_ 201_M_32868


title: Breast Cancer Array_Patient ID_ 120_BL [GSM828889]

description: POL

source_name: Primary Breast Tumor_Patient ID_120_BL


title: Breast Cancer Array_Patient ID_ 123_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 123_M


title: Breast Cancer Array_Patient ID_ 121_BL [GSM828890]

description: POL

source_name: Primary Breast Tumor_Patient ID_121_BL


title: Breast Cancer Array_Patient ID_ 118_BL [GSM828887]

description: POL

source_name: Primary Breast Tumor_Patient ID_118_BL


title: Breast Cancer Array_Patient ID_ 118_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 118_S


title: Breast Cancer Array_Patient ID_ 115_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 115_M


title: Breast Cancer Array_Patient ID_ 119_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 119_S


title: Breast Cancer Array_Patient ID_ 119_BL [GSM828888]

description: POL

source_name: Primary Breast Tumor_Patient ID_119_BL


title: Breast Cancer Array_Patient ID_ 112_M

description: POL

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 112_M


title: Breast Cancer Array_Patient ID_ 117_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 117_S


title: Breast Cancer Array_Patient ID_ 114_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 114_S


title: Breast Cancer Array_Patient ID_ 111_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 111_S


title: Breast Cancer Array_Patient ID_ 117_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 117_M


title: Breast Cancer Array_Patient ID_ 122_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 122_S


title: Breast Cancer Array_Patient ID_ 114_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 114_M


title: Breast Cancer Array_Patient ID_ 114_BL [GSM828884]

description: POL

source_name: Primary Breast Tumor_Patient ID_114_BL


title: Breast Cancer Array_Patient ID_ 104_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 104_M


title: cMELAS.EC.2

status: Public on Oct 29 2019

data_processing:
Reads with adapters were trimmed by using Trimmomatic (v0.38) software retaining the reads with >= 30 bases length after trimming.
Clean reads were then mapped to reference genome (hg19) using STAR (v2.6.1a) with default parameters.
Gene expression quantification was done by using HTSeq-count (v0.11.0) in strand-specific mode to obtain raw read counts for each gene.
Differential gene expression analysis was performed by using DESeq2 (v1.22.2) starting from the raw read counts by comparing the samples from MELAS EC to cMELAS EC after collapsing the three samples within each group as replicates.
Genes that are not expressed (total read counts <= 1 across all the samples) were removed from the analysis.
Genome_build: hg19
Supplementary_files_format_and_content: The processed data file includes raw read counts, normalized read counts, DESeq2 output with statistics and the final list of differentially expressed genes included in the paper. DESeq2 analysis was done together with H9 EC samples, which were then removed from the further analyses. From the DESeq2 output, DE genes with p-value <0.05 (contrast = MELAS vs cMELAS) were selected and uploaded to DAVID database for GO enrichment analysis. A list of significantly relevant GO terms were selected and the associated genes were used to generate the heatmap in the paper.

source_name: cMELAS EC

growth_protocol: Cells were grown in endothelial growth media-2 (Lonza, U.S. A)

tag: subject status

value: control

value: Human iPSC derived endothelial cells


title: MELAS.EC.3

source_name: MELAS EC

value: Mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes (MELAS) patient


title: Breast Cancer Array_Patient ID_ 110_S_Redo

description: POL

source_name: Primary Breast Tumor_Patient ID_ 110_S_Redo


title: Breast Cancer Array_Patient ID_ 111_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 111_M


title: Breast Cancer Array_Patient ID_ 109_BL

description: POL

source_name: Primary Breast Tumor_Patient ID_ 109_BL


title: MELAS.EC.1


title: Breast Cancer Array_Patient ID_ 105_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 105_S


title: Breast Cancer Array_Patient ID_ 107_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 107_M


title: Breast Cancer Array_Patient ID_ 103_S

description: POL

source_name: Stratagene Human Universal Reference spiked with MCF7 and  ME16C mRNA

source_name: Primary Breast Tumor_Patient ID_ 103_S


title: Breast Cancer Array_Patient ID_ 108_BL

description: POL

source_name: Primary Breast Tumor_Patient ID_ 108_BL


title: Breast Cancer Array_Patient ID_ 112_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 112_S


title: cMELAS.EC.3


title: MELAS.EC.2


title: Breast Cancer Array_Patient ID_ 119_M

description: POL

source_name: Primary Breast Tumor_Patient ID_ 119_M


title: Control P11

status: Public on Oct 08 2019

city: Bethesda

first: Gabriela

middle: A

last: Ferreyra

state: MD

address: 9000 Rockville Pike - Building 10 room 4D03

department: CCMD

institute: Clinical Center

description: PBMC Gene expression data from Healthy Volunteer

hyb_protocol: 2,3 ug of fragmented biotin labeled cRNA was used on hybridization cocktails on GeneChip Human Gene 1.0 ST Array (Affymetrix) following manufacturer protocols.

scan_protocol: Affymetrix GeneChip Human Gene 1.0 ST Array chips were scanned using the Affymetrix GeneChip Scanner 7G.

data_processing: Raw signal intensity values (mas 5 algorithm) are provided in the matrix file.

label: Biotin

source_name: PBMC

label_protocol: Affymetrix GeneChip WT Expression kit  was used for the synthesis of cDNA and cRNA an biotin-labeled cRNA. 150 ng of tRNA was utilized as starting material following manufacturer protocol.

growth_protocol: PBMCs were isolated from whole blood using BD Vacutainer CPT cell preparation tubes. Following PBMC isolation, citospined samples were used to confirm sample purity manually (> 97% lymphocytes and monocytes).

extract_protocol: Purified PBMCs were lysed in buffer RLT and, passed through Qiashredder columns.  Total RNA was purified using RNeasy mini kits and quantified with a NanoDrop spectrophotometer. Quality of total RNA was evaluated using RNA 6000 Nano LabChip

tag: gender

value: female


title: Breast Cancer Array_Patient ID_ 107_S

description: POL

source_name: Primary Breast Tumor_Patient ID_ 107_S


title: Control P14


title: Control P12


title: PAH P13

description: PBMC Gene expression data from CTD-PAH patient (Lupus/Scleroderma)


title: PAH P12

description: PBMC Gene expression data from CTD-PAH patient (CREST/Scledoderma)


title: Control P13


title: Control P9


title: PAH P8

description: PBMC Gene expression data from IPAH patient


title: Fetal liver HSPC,infected with MLLT3-OE vector sample6

status: Public on Mar 06 2019

city: Los Angeles

first: Vincenzo

last: Calvanese

address: 615 Charles E Young Dr S

institute: UCLA

description:
FL4w_Mlo_4
MLLT3OE4w_6s_d0_3s_exoRpkmSt.txt
diffOE4w_6s_paired_edgeR.txt
MLLT3_OE_4w_HSPC_6

data_processing:
Alignment: TopHat v2.0.14. parameters --no-coverage-search --library-type fr-firststrand -o
Coverage file: Genomecov, Bedtools, parameters -bg -split –ibam
Tags: Maketagdirectory
RPKM: analyzeRepeats.pl. parameters -rna hg19 -noadj or -rpkm -strand - -count exons -condenseGenes
DGE: getDiffExpression.pl
Genome_build: hg19
Supplementary_files_format_and_content: txt containing RPKM and DGE

source_name: human FL CD34+CD38-/lowCD90+GFP+

growth_protocol: Fetal Liver is mechanically disrupted. CD34+ cells cells are magnetically separated. The indicated phenotype are facs sorted.

extract_protocol:
Cells are FACS sorted in RLT and RNA is extracted using RNeasy Mini kit (Qiagen)
KAPA RNA HyperPrep Kit with RiboErase (HMR)

treatment_protocol: Cells are infected with CTR or MLLT3-OE virus and cultured on OP9M2 stroma

value: FL-HSPC

tag: genotype/variation

value: MLLT3 overexpression

tag: time


title: Fetal liver HSPC,infected with CTR FUGW vector sample5

description:
FL4w_FU_3
MLLT3OE4w_6s_d0_3s_exoRpkmSt.txt
diffOE4w_6s_paired_edgeR.txt
CTR_4w_HSPC_5


title: PAH P9

description: PBMC Gene expression data from CTD-PAH patient (mixed connective tissue disease)


title: Fetal liver HSPC,infected with CTR FUGW vector sample6

description:
FL4w_FU_4
MLLT3OE4w_6s_d0_3s_exoRpkmSt.txt
diffOE4w_6s_paired_edgeR.txt
CTR_4w_HSPC_6


title: cMELAS.EC.1


title: D17-8511: ATF6f/XBP1s 39C, Rep3

status: Public on Sep 10 2018

city: Cambridge

first: Matthew

middle: D

last: Shoulders

state: MA

address: 77 Massachusetts Avenue

department: Chemistry

institute: Massachusetts Institute of Technology

description: Sample 18 ATF6f/XBP1s 39C, Rep3

data_processing:
Illumina Offline BaseCaller1.9.3  software used for basecalling.
Quality control: Reads were aligned against hg19 (Feb. 2009) using bwa mem v. 0.7.12-r1039 with flags –t 16 –f and mapping rates, fraction of multiply-mapping reads, number of unique 20-mers at the 5’ end of the reads, insert size distributions and fraction of ribosomal RNAs were calculated using dedicated perl scripts and bedtools v. 2.25.0.64 In addition, each resulting bam file was randomly down-sampled to a million reads, which were aligned against hg19 and read density across genomic features were estimated for RNA-Seq-specific quality control metrics.
RNA-Seq mapping and quantitation: Reads were aligned against hg38 / ENSEMBL 89 annotation using STAR v. 2.5.3a with flags --runThreadN 8 --runMode alignReads  --outFilterType BySJout --outFilterMultimapNmax 20 --alignSJoverhangMin 8 --alignSJDBoverhangMin 1 --outFilterMismatchNmax 999 --alignIntronMin 10 --alignIntronMax 1000000 --alignMatesGapMax 1000000 --outFileNamePrefix D17-188001 --outSAMtype BAM SortedByCoordinate --quantMode TranscriptomeSAM   with --genomeDir pointing to a 75nt-junction hg38 STAR suffix array.
Gene expression was quantitated using RSEM v. 1.3.0 with the following flags for all libraries: rsem-calculate-expression --calc-pme --alignments -p 8  --forward-prob 0 against an annotation matching the STAR SA reference. Posterior mean estimates (pme) of counts and estimated RPKM were retrieved.
Genome_build: hg38
Supplementary_files_format_and_content: Tab-delimited text file containing log2-transformed RPKM values for all hg38 annotated genes (ENSEMBL 89) in each sample (RSEM pme_RPKM output).

source_name: Human Embryonic Kidney (HEK) 293T-Rex Cells

growth_protocol: Low passage cells were plated at a density of 750,000 cells/well in 12 well plates.

extract_protocol:
Cells were trypsinized and RNA was extracted using the Qiagen RNeasy Plus Mini Kit and QIAshredder homogenization columns.
For RNAseq, RNA integrity and concentration were checked on a Fragment Analyzer (Advanced Analytical) and libraries were prepared using the Kapa HyperPrep RNAseq kit (Roche). Libraries were quantified using the Fragment Analyzer (Advanced Analytical) and qPCR before being loaded for single-end sequencing using the Illumina HiSeq 2500 for 40 nucleotides.
polyA-based mRNA capture using Kapa Hyperprep strand-specific strategy.

treatment_protocol: At the time of plating, cells were treated with either 0.01% DMSO, 1 ug/mL Doxycycline, or 1 ug/mL Doxycycline + 1 uM TMP, at both 37C and 39C (24 hour treatment).

tag: tissue

value: Adult-derived epithelial cell line

value: Human Embryonic Kidney (HEK) 293T-Rex

value: Clonal; stably expressing DHFR.ATF6, Tet-XBP1s, and the tetracycline repressor

tag: condition

value: 24h 0.1 ug/mL doxycycline + 1 uM trimethoprim, 39C


title: D17-8510: ATF6f/XBP1s 39C, Rep2

description: Sample 17 ATF6f/XBP1s 39C, Rep2


title: PAH P7

description: PBMC Gene expression data from CHD-PAH patient (ASD)


title: PAH P6


title: Control P8


title: PAH P14


title: D17-188015: XBP1s 39C, Rep3

description: Sample 15 XBP1s 39C, Rep3

value: 24h 0.1 ug/mL doxycycline, 39C


title: Control P7


title: PAH P4


title: Control P6


title: Fetal liver HSPC,infected with MLLT3-OE vector sample5

description:
FL4w_Mlo_3
MLLT3OE4w_6s_d0_3s_exoRpkmSt.txt
diffOE4w_6s_paired_edgeR.txt
MLLT3_OE_4w_HSPC_5


title: D17-188012: Basal 39C, Rep3

description: Sample 12 Basal 39C, Rep3

value: 24h 0.01% DMSO treatment, 39C


title: D17-8509: ATF6f/XBP1s 39C, Rep1

description: Sample 16 ATF6f/XBP1s 39C, Rep1


title: D17-188014: XBP1s 39C, Rep2

description: Sample 14 XBP1s 39C, Rep2


title: D17-188013: XBP1s 39C, Rep1

description: Sample 13 XBP1s 39C, Rep1


title: Breast Cancer Array_Patient ID_ 103_BL [GSM828879]

description: POL

source_name: Primary Breast Tumor_Patient ID_103_BL


title: D17-188008: ATF6f/XBP1s 37C, Rep2

description: Sample 8 ATF6f/XBP1s 37C, Rep2

value: 24h 0.1 ug/mL doxycycline + 1 uM trimethoprim, 37C


title: D17-188005: XBP1s 37C, Rep2

description: Sample 5 XBP1s 37C, Rep2

value: 24h 0.1 ug/mL doxycycline, 37C


title: D17-188004: XBP1s 37C, Rep1

description: Sample 4 XBP1s 37C, Rep1


title: D17-188006: XBP1s 37C, Rep3

description: Sample 6 XBP1s 37C, Rep3


title: D17-188011: Basal 39C, Rep2

description: Sample 11 Basal 39C, Rep2


title: D17-188003: Basal 37C, Rep3

description: Sample 3 Basal 37C, Rep3

value: 24h 0.01% DMSO treatment, 37C


title: Control P4


title: D17-188007: ATF6f/XBP1s 37C, Rep1

description: Sample 7 ATF6f/XBP1s 37C, Rep1


title: D17-188010: Basal 39C, Rep1

description: Sample 10 Basal 39C, Rep1