title: C2PL8V2

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: 24h proteinuria


title: C1PL14V1

status: Public on Jan 02 2022

type: RNA

city: Seattle,

first: Stephanie

last: Osmond

state: WA

address: 1201 9th Ave

country: USA

institute: Benaroya Research Institute

hyb_protocol: 750 ng of amplified labeled RNA were hybridized overnight to Illumina HT12 V4 beadchips (Illumina, San Diego, CA)

scan_protocol: Following hybridization each chip was washed, blocked, stained, and scanned on an Illumina BeadStation 500 following the manufacturer’s protocols.

data_processing: Illumina GenomeStudio software was used for each sample to subtract background and scale average signal intensity to the global average signal intensity for all samples.

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: Whole Blood

label_protocol: 250 ng of RNA from all samples passing quality control were then amplified and labeled using the Illumina TotalPrep-96 RNA amplification kit (Ambion, Austin, TX)

extract_protocol: RNA was isolated using the MagMAX™-96 Blood RNA Isolation Kit (Applied Biosystems/Ambion, Austin, TX, USA) according to the manufacturer's instructions

tag: group

value: SLE

tag: sle group 1 2 3

tag: collection date

tag: condition

value: SLE-mildModerateFlare

tag: years since dx

tag: age

tag: gender

value: F

tag: race

value: Caucasian

tag: country of origin

value: North Africa

tag: sledai

tag: skin

value: Y

tag: joints

value: N

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: serum creatinin

tag: acuterenfail


title: C2PL33V2

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

value: SLE-SevereFlare

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

value: France

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: class kb

value: III

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: chronickd


title: C2PL11V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

value: SLE-NoFlare

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: serum creatinin

tag: acuterenfail

tag: 24h proteinuria


title: C1PL9V4

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: haematuria


title: C1PL3V1

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: serum creatinin

tag: acuterenfail

tag: 24h proteinuria

tag: leukocyturia

tag: uriry casts

tag: protid

tag: albumin

tag: nephrotic sd


title: C2PL20V3

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

value: M

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: low c3

tag: low c4

tag: arnp

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: haematuria


title: C2PL14V2

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: serum creatinin

tag: acuterenfail

tag: 24h proteinuria

tag: leukocyturia

tag: uriry casts

tag: protid

tag: nephrotic sd


title: C2PL2V3

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: haematuria

tag: albumin


title: C1PL10V2

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: serum creatinin

tag: acuterenfail

tag: 24h proteinuria


title: C2PL26V2

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: haematuria

tag: leukocyturia

tag: uriry casts

tag: protid

tag: albumin

tag: nephrotic sd


title: C2PL41V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: class kb

value: IV

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: serum creatinin

tag: acuterenfail


title: C2PL10V4

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: asm

tag: assa

tag: assb

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: 24h proteinuria

tag: haematuria

tag: leukocyturia

tag: uriry casts

tag: protid

tag: albumin

tag: nephrotic sd


title: C1PL12V3

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: serum creatinin

tag: acuterenfail


title: C2PL5V2

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: assa

tag: assb

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: 24h proteinuria

tag: haematuria


title: C2PL36V5

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

value: Black

tag: country of origin

value: Cuba

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: serum creatinin

tag: acuterenfail


title: C2PL10V3

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: 24h proteinuria


title: C2PL21V2

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

value: Zaire

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: serum creatinin

tag: acuterenfail


title: C2PL12V2

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: 24h proteinuria

tag: haematuria


title: C2PL32V3

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: serum creatinin

tag: acuterenfail


title: C2PL3V3

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: 24h proteinuria

tag: haematuria


title: C1PL2V2

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: serum creatinin

tag: acuterenfail


title: C1PL1V2

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: 24h proteinuria

tag: haematuria

tag: leukocyturia

tag: uriry casts

tag: protid

tag: albumin

tag: nephrotic sd


title: C1PL6V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: serum creatinin

tag: acuterenfail


title: C2PL20V1

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: 24h proteinuria

tag: haematuria


title: C2PL30V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: serum creatinin

tag: acuterenfail

tag: leukocyturia

tag: uriry casts

tag: protid

tag: albumin


title: C2PL33V3

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: 24h proteinuria

tag: haematuria


title: C2PL43V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: class kb

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: serum creatinin

tag: acuterenfail

tag: leukocyturia

tag: uriry casts

tag: protid

tag: albumin

tag: nephrotic sd

tag: crp

tag: ldh


title: C2PL20V5

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: 24h proteinuria

tag: haematuria


title: C2PL29V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: serum creatinin

tag: acuterenfail


title: C2PL10V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: 24h proteinuria


title: C2PL16V3

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: serum creatinin

tag: acuterenfail

tag: haematuria


title: C2PL6V4

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: 24h proteinuria


title: C2PL26V3

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: serum creatinin

tag: acuterenfail

tag: haematuria


title: C2PL5V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: class kb

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: chronickd

tag: 24h proteinuria

tag: leukocyturia

tag: uriry casts

tag: protid

tag: albumin

tag: nephrotic sd

tag: cpk

tag: ldh


title: C2PL6V2

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: serum creatinin

tag: acuterenfail

tag: haematuria


title: C1PL1V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: class kb

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: chronickd


title: C2PL13V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: serum creatinin

tag: acuterenfail

tag: 24h proteinuria


title: C2PL45V2

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: chronickd

tag: haematuria

tag: leukocyturia

tag: uriry casts

tag: protid

tag: nephrotic sd


title: C2PL35V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: class kb

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: serum creatinin

tag: acuterenfail

tag: 24h proteinuria


title: C2PL28V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: chronickd


title: C2PL5V3

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: serum creatinin

tag: acuterenfail

tag: 24h proteinuria

tag: haematuria


title: C2PL19V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: class kb

value: V

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: chronickd


title: C2PL16V1

tag: group

value: SLE

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: serum creatinin

tag: acuterenfail

tag: 24h proteinuria


title: C2PL12V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: chronickd


title: C2PL38V2

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: serum creatinin

tag: acuterenfail

tag: 24h proteinuria

tag: haematuria

tag: leukocyturia

tag: uriry casts

tag: protid

tag: albumin

tag: nephrotic sd


title: C2PL33V5

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: chronickd


title: C2PL13V3

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: serum creatinin

tag: acuterenfail

tag: 24h proteinuria

tag: haematuria


title: C2PL8V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: chronickd


title: C2PL9V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: class kb

value: II

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: serum creatinin

tag: acuterenfail


title: C2PL26V4

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

value: F

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: chronickd

tag: 24h proteinuria

tag: haematuria


title: C2PL1V3

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

value: SLE-mildModerateFlare

tag: years since dx

tag: age

tag: gender

tag: race

value: Caucasian

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: class kb

value: C

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: serum creatinin

tag: acuterenfail

tag: leukocyturia

tag: uriry casts

tag: protid

tag: albumin

tag: nephrotic sd

tag: apsyndrome


title: C1PL9V2

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

value: Y

tag: joints

value: N

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: 24h proteinuria

tag: haematuria


title: C2PL2V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

value: SLE-SevereFlare

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

value: North Africa

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: class kb

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: serum creatinin

tag: acuterenfail


title: C2PL26V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

value: SLE-NoFlare

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

value: France

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: 24h proteinuria


title: C2PL32V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: class kb

value: IV

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: serum creatinin

tag: acuterenfail


title: C2PL24V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: chronickd

tag: 24h proteinuria


title: C2PL20V6

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

value: M

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: hb below 12

tag: serum creatinin

tag: acuterenfail

tag: haematuria

tag: leukocyturia

tag: uriry casts

tag: protid

tag: albumin

tag: nephrotic sd

tag: cpk

tag: ldh

tag: asat

tag: alat

tag: bilirubin

tag: alk phos

tag: cholesterol

tag: hdl

tag: ldl

tag: triglycerides

tag: apsyndrome


title: C1PL7V2

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

value: Black

tag: country of origin

value: New Caledonia

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: serum creatinin

tag: acuterenfail

tag: chronickd

tag: 24h proteinuria

tag: haematuria


title: C2PL9V3

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent


title: C2PL13V2

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: serum creatinin

tag: acuterenfail

tag: chronickd

tag: 24h proteinuria

tag: haematuria


title: C2PL32V4

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: low c3

tag: low c4

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: leukocyturia

tag: uriry casts

tag: protid

tag: albumin

tag: nephrotic sd

tag: crp


title: C2PL36V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

value: Cuba

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: class kb

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: serum creatinin

tag: acuterenfail

tag: chronickd

tag: 24h proteinuria

tag: haematuria


title: C1PL4V3

tag: group

value: SLE

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: leukocyturia

tag: uriry casts

tag: protid

tag: albumin

tag: nephrotic sd


title: C2PL33V6

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: serum creatinin

tag: acuterenfail

tag: chronickd

tag: 24h proteinuria

tag: haematuria


title: C1PL16V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: neutro percent

tag: lympho


title: C2PL46V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: class kb

value: II

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: serum creatinin

tag: acuterenfail

tag: chronickd

tag: 24h proteinuria

tag: haematuria

tag: leukocyturia

tag: uriry casts

tag: protid

tag: albumin

tag: nephrotic sd

tag: crp

tag: cpk


title: C2PL9V4

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent


title: C2PL1V1

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

value: F

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: class kb

value: III

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: serum creatinin

tag: acuterenfail

tag: chronickd


title: C2PL17V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

value: Caucasian

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: 24h proteinuria

tag: haematuria

tag: leukocyturia


title: C1PL16V2

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: serum creatinin

tag: acuterenfail

tag: chronickd

tag: uriry casts

tag: protid

tag: albumin

tag: nephrotic sd


title: C2PL9V5

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: 24h proteinuria

tag: haematuria


title: C2PL15V3

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: serum creatinin

tag: acuterenfail

tag: chronickd

tag: leukocyturia

tag: uriry casts

tag: protid

tag: albumin

tag: nephrotic sd

tag: ldh

tag: asat

tag: alat

tag: bilirubin

tag: alk phos

tag: cholesterol

tag: apsyndrome


title: C2PL42V3

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

value: Asian

tag: country of origin

value: Vietnam

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: 24h proteinuria

tag: haematuria


title: C2PL17V2

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

value: N

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

value: Y

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: serum creatinin

tag: acuterenfail

tag: chronickd

tag: leukocyturia

tag: uriry casts

tag: protid

tag: albumin

tag: nephrotic sd


title: C2PL12V3

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: 24h proteinuria

tag: haematuria


title: C2PL45V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

value: SLE-SevereFlare

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

value: North Africa

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: class kb

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: serum creatinin

tag: acuterenfail

tag: chronickd

tag: leukocyturia

tag: uriry casts


title: C2PL2V2

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: 24h proteinuria

tag: haematuria

tag: protid

tag: albumin

tag: nephrotic sd


title: C2PL39V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

value: SLE-NoFlare

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: class kb

value: C

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: serum creatinin

tag: acuterenfail

tag: chronickd

tag: leukocyturia

tag: uriry casts

tag: apsyndrome


title: C2PL45V3

tag: group

tag: collection date

tag: condition

value: SLE-mildModerateFlare

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: 24h proteinuria

tag: haematuria

tag: protid

tag: albumin

tag: nephrotic sd


title: C1PL9V5

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

value: France

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: serum creatinin

tag: acuterenfail

tag: chronickd


title: C1PL2V3

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

value: M

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: 24h proteinuria

tag: haematuria


title: C2PL29V3

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: serum creatinin

tag: acuterenfail

tag: chronickd


title: C2PL19V2

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: 24h proteinuria

tag: haematuria


title: C2PL40V1

tag: group

tag: sle group 1 2 3

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: class kb

value: IV

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: serum creatinin

tag: acuterenfail

tag: chronickd

tag: leukocyturia

tag: uriry casts


title: C1PL11V2

tag: group

value: SLE

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: eosino

tag: eosino percent

tag: 24h proteinuria

tag: haematuria


title: C2PL27V2

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: low c3

tag: low c4

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: serum creatinin

tag: acuterenfail

tag: chronickd

tag: leukocyturia

tag: uriry casts

tag: protid

tag: albumin

tag: nephrotic sd

tag: apsyndrome


title: C1PL1V3

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: arnp

tag: asm

tag: assa

tag: assb

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: 24h proteinuria

tag: haematuria


title: C3VS6

tag: group

value: Healthy control of SLE

tag: collection date

tag: condition

tag: age

tag: gender

tag: race

tag: country of origin


title: C3VS29

value: Healthy control of ITP

value: F


title: C3VS14

value: Caucasian


title: C3VS2


title: C2PL14V1

tag: sle group 1 2 3

tag: years since dx

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: serum creatinin

tag: acuterenfail

tag: chronickd


title: C2PL28V2

tag: group

tag: collection date

tag: condition

tag: years since dx

tag: age

tag: gender

tag: race

tag: country of origin

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: eosino

tag: eosino percent

tag: 24h proteinuria

tag: haematuria


title: C3VS20

tag: group

tag: collection date

tag: condition

tag: age

tag: gender

tag: race

tag: country of origin


title: C2PL9V2

tag: years since dx

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: cd4 tcells

tag: cd4 percent

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: serum creatinin

tag: acuterenfail

tag: chronickd


title: C3VS5

tag: group

tag: collection date

tag: condition

tag: age

tag: gender

tag: race

tag: country of origin


title: C2PL20V2

tag: years since dx

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: eosino

tag: eosino percent

tag: 24h proteinuria

tag: haematuria


title: C3VS4

tag: group

tag: collection date

tag: condition

tag: age

tag: gender

tag: race

tag: country of origin


title: C3VS18


title: C2PL33V1

tag: years since dx

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: cd8 t cells

tag: cd8 percent

tag: b cells

tag: b cell percent

tag: nk cells

tag: nk cell percent

tag: serum creatinin

tag: acuterenfail

tag: chronickd


title: C3VS10

tag: group

tag: collection date

tag: condition

tag: age

tag: gender

tag: race

tag: country of origin


title: P63-BD-1686

value: Healthy control of sepsis and kidney disease


title: C3VS19


title: C3VS9


title: C3VS12


title: C3VS11


title: C3VS15

value: Black

value: French West Indies


title: C3VS1


title: C3VS8


title: C3VS3


title: C3VS16


title: C2PL33V4

tag: years since dx

tag: sledai

tag: skin

value: N

tag: joints

tag: hemato

tag: renal

value: Y

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: neutro percent

tag: lympho

tag: lympho percent

tag: cd4 tcells

tag: cd4 percent

tag: eosino

tag: eosino percent

tag: 24h proteinuria

tag: haematuria


title: 9908125-035

tag: group


title: C3VS13

tag: collection date

tag: condition

tag: age

tag: gender

tag: race

tag: country of origin

value: North Africa


title: C3VS7


title: C1PL4V4

tag: years since dx

tag: sledai

tag: skin

tag: joints

tag: hemato

tag: renal

tag: kidney biopsy

tag: ever renal

tag: cyp

tag: aza

tag: mmf

tag: csa

tag: iv cs

tag: oral cs

tag: cs daily dose

tag: cs mgkg

tag: hcq

tag: hcq mg

tag: nsaid

tag: a-dsdna antibodies

tag: a-dsd

tag: low c3

tag: low c4

tag: arnp

tag: asm

tag: assa

tag: assb

tag: hb below 12

tag: hb

tag: platelets

tag: leukocytes

tag: leukopenia <3000

tag: neutro

tag: serum creatinin

tag: acuterenfail

tag: chronickd

tag: leukocyturia

tag: uriry casts

tag: protid

tag: nephrotic sd


title: P63-BD-2485

tag: group


title: P63-BD-1148


title: P63-BD-1386


title: 9908098-003


title: 9908103-013


title: 9908126-031


title: 9908096-002


title: P63-BD-1021


title: P63-BD-2490


title: P63-BD-1607


title: P63-BD-1887


title: P63-BD-1384


title: 9908102-017


title: C2T54

value: Control Kidney Disease

tag: collection date

tag: condition

value: IgA nephropathy

tag: age

tag: gender

tag: race

tag: country of origin


title: P63-BD-2812


title: 9908136-043


title: C2T40

value: Membranous  GN


title: C2T14.1

value: ANCA associated vasculitis

value: France


title: 9908092-024


title: 9908108-022


title: C2T26

value: M


title: C2T50


title: C2T37


title: P63-BD-1692


title: P63-BD-1749


title: C2T34

value: Minimal Change Disease


title: C2T25

value: FSGS (primary)


title: C2T19


title: C2T16

value: French West INAies


title: C2T47

value: F


title: C2T21

value: Caucasian


title: C2T53


title: C2T35


title: C2T14.2


title: C2T20


title: C2T31


title: C2T1


title: C2T48


title: C2T39


title: C2T22


title: C2T17


title: C2T29


title: C1T35

value: Control ICU_sepsis

value: documented bacterial pneumonia


title: C2T41


title: C2T27

value: FSGS (hereditary)


title: C1T30


title: C1T31


title: C1T18


title: ND388.Day20_Continuous [scRNA-seq]

status: Public on Dec 06 2021

type: SRA

city: Philadelphia

first: Gregory

last: Donahue

state: PA

address: 3400 Civic Center Blvd, Bldg 421

department: Cell & Developmental Biology

institute: The University of Pennsylvania

library_source: transcriptomic

data_processing:
Alignment: 10X v2 sequencing data were aligned to the GRCh38 genome, filtered, and then barcodes and unique molecular identifiers were counted using the Cell Ranger v3.1.0 command cellranger count.
Genome_build: GRCh38
Supplementary_files_format_and_content: We include cloupe files (the output of cellranger count) which can be loaded in the Loupe Browser to see the expression level of genes in each cell.

molecule: polyA RNA

source_name: M5CAR T cells (PBMCs)

growth_protocol: Primary human CD4+ T and CD8+ T cells from normal donors were provided by University of Pennsylvania Human Immunology Core. CAR T cells were generated as previously described (Carpenito et al., 2009). Briefly, CD4+ and CD8+ T at 1:1 ratio at 1 x 10e6 cells/ml were activated with Dynabeads CD3/CD28 CTSTM (Gibco, Life Technologies) at a 3:1 bead-to-cell ratio. Approximately after 24 hours, T cells were transduced at a multiplicity of infection (MOI) of 5. At day 5 beads were removed from cultures. T cell cultures were maintained at 8 x 10e5 cells/ml. Cell number and volume were monitored daily using Multisizer 4 Coulter Counter (Beckmanwaslter). Transduced T cells were cryopreserved when reached the resting state, as determined by cell size.

extract_protocol:
For flow cytometry and sorting assays of CAE, M5 CAR T cells were stained in fluorescence-activated cell sorting (FACS) buffer consisting of PBS (Gibco), 0.5% bovine serum albumin (BSA) (GEMINI), 2 mM EDTA (Invitrogen), and 100ug/ml DNase (Roche). CountBrightTM Absolute Counting Beads, (ThermoFisher) were used as an internal standard according to the manufacturer's instructions to calculate absolute cell counts in cell suspensions.  Antibodies specific for human CD45 (ref 304032, clone HI30), CD3 (317322, OKT3), CD4 (357412, A161A1 / 317440), CD56 (304608, MEM-188), EpCAM (324226/324238, 9C4), CD94 (305520, DX22), KLRB1 (339918, HP-3G10), TIGIT (372716, A15153G), TCR Va24-Ja18 (342922, 6B11), PD-1 (329928, EH12.2H7) were purchased from BioLegend. Antibodies specific for human CD8 (560179, SK1) was purchased from BD Pharmingen. Antibodies specific for human NKG2A (FAB1059P, 131411) and Methothelin (FAB32652P, 420411) were purchased from R&D Systems. Antibodies specific for human CTLA-4 (12-1529-42, 14D3) was purchased from eBioscience. Antibody specific for human NKG2C (130-103-636, REA205) was purchased from Miltenyi.  M5 CAR expression was assessed using biotinylated goat anti-human IgG F(ab’)2 (Jackson ImmunoResearch, 109-066-006) followed by streptavidin (FITC or APC) (BioLegend) or using an anti-idiotype antibody provided by Novartis Pharmaceuticals. Live/dead staining was performed using a Live/Dead Fixable Aqua Dead Cell Stain Kit (Life Technologies following manufacturer’s protocol followed by cell surface staining for 20 minutes at room temperature in the dark. Intracellular staining was performed with the Foxp3/Transcription Factor Staining Buffer set (Thermo Fisher) according to the manufacturer’s instructions. Samples were acquired on an LSRII Fortessa Cytometer (BD Bioscience) and analyzed with FlowJo v10 software (FlowJo, LLC). Sorting assays were performed using a FACS Aria Cytometer (BD Bioscience).    Donor ND388: scRNA-seq libraries were generated using a Chromium Single Cell 3’ Library and Gel Bead Kit v3 (10x Genomics) according to the manufacturer’s protocol. Briefly, 16,000 CD8+ T cells were sorted by flow cytometry and washed with ice cold PBS + 0.04% BSA. After washing, cells were used to generate single cell gel beads in emulsion. Following reverse transcription, gel beads in emulsion were disrupted and barcoded complementary DNA was isolated and amplified by PCR for 12 cycles. After fragmentation, end repair, and poly A tailing, samples indexes were added and amplified following the manufacturer’s protocol.    Donors ND150 and ND538: scRNA-seq libraries were generated using Chromium Single Cell 5’ Library and Gel Bead Kit and TCR libraries were generated using Chromium Single Cell V(D)J Reagent Kits (10x Genomics) according to the manufacturer’s protocol. Followed same brief protocol as above except amplified cDNA by PCR for 13 cycles.  Two uL of post amplified cDNA was used to generate TCR libraries and 50ng of cDNA were used to generate 5’ gene expression libraries. After fragmentation, end repair and poly A tailing, samples indexes were added and amplified following manufacturer’s protocol.
Donor ND388: the final libraries were quality control checked and sequenced on an Illumina NextSeq 500 with a 150 cycle kit with parameters Read 1: 28, Read 2: 130, Index 1: 8, Index 2: 0. One sample was sequenced per flow cell. Donors ND150 and ND538: the libraries were sequenced on an Illumina NextSeq 500 with a 150 cycle kit with parameters Read 1: 26, Read 2: 130, Index 1: 8, Index 2: 0. One RNA library and one TCR library (8:1 ratio) were pooled and sequenced on one flow cell.

treatment_protocol: AsPC-1 cells were routinely seeded in 6-well plates at 1 x 10e6 cells/well the day preceding T cell seeding. M5 CAR T cells (30 - 50% of transduction efficiency) were thawed and rested at 1 x 10e6 cells/ml in T75 flasks with R10 media. After 24 hours, the T cell number (CD45+EpCAM-) was calculated and 2.5 x 10e5 T cells/well were transferred to the AsPC-1 plates. After 3 - 4 days, the cocultures were thoroughly suspended by frequent pipetting and 300 - 400µl of the cell suspension was used for T cell counting assessment and flow cytometry staining. The remaining cell suspension was spun down and the supernatant (conditioned media) was collected and filtered with a 0.45µm filter (Corning). The cells were resuspended in media containing equal amounts of conditioned and fresh R10. The resulting T cell suspension was transferred into AsPC-1-coated plates cells (2.5 x 10e5 T cells/well) for continuous co-culture. This process was repeated for 20-35 days.

tag: donor

tag: antigen exposure

value: Continuous


title: ND538.Day28_Continuous [scRNA-seq]


title: ND538.Day0_Control [scRNA-seq]

value: Control


title: C1T26


title: C1T15


title: ND388.Day0_Control [scRNA-seq]


title: ND150.Day28_Continuous [scRNA-seq]


title: C1T16


title: ND150.Day0_Control [scRNA-seq]


title: C1T9


title: C1T7

value: North Africa


title: C1T17


title: CD8 iNKT cells from PBMC replicate 3 [PBMC_iNKT_CD8_3]

status: Public on Dec 01 2021

city: Los Angeles

first: Feiyang

last: Ma

state: CA

address: 610, Charles Young Dr East, TLSB 3000C

department: Molecular Biology Institute

institute: UCLA

data_processing:
Libraries were sequenced with 50bp single end reads on an Illumina HiSeq3000.
The reads were mapped with STAR 2.5.3a to the human genome (hg38).
The counts for each gene were obtained using --quantMode GeneCounts in STAR commands, and the other parameters during alignment were set to default.
Genome_build: hg38
Supplementary_files_format_and_content: Matrix table with raw gene counts for each sample

source_name: CD8 iNKT cells from PBMC

growth_protocol: All samples were isolated from human healthy donor peripheral nlood monunuclear cells provided by UCLA Virology Core

extract_protocol:
All samples were stored in RNA later stabilization solution and subsequently total RNA was extracted using RNA mini Kit (7326830, BioRad). cDNA was synthesized by using iScript cDNA Synthesis Kit (1708890, BioRad) and qPCR performed.
For RNA-sequencing, libraries were prepared by the Technology Center for Genomics & Bioinformatics at UCLA using Illumina TruSeq Stranded Total RNA Sample Prep kit and sequenced with 50bp single end reads on an Illumina HiSeq3000.

treatment_protocol: All samples were sorted using MACS microbeads or FACS flow sorting performed by UCLA FACS Core

tag: cell type

value: human NKT cells

tag: cell subtype

value: CD8 iNKT cells from PBMC


title: C1T19


title: C1T22


title: C1T27


title: C1T14


title: CD8 iNKT cells from PBMC replicate 2 [PBMC_iNKT_CD8_2]


title: CD8 iNKT cells from PBMC replicate 1 [PBMC_iNKT_CD8_1]


title: NK cells replicated 2 [NK_2]

source_name: NK cells

value: human NK cells

value: NK cells


title: Activated CD8 T cells replicate 6 [Activate_T_CD8_6]

source_name: Activated CD8 T cells

value: human T cells

value: Activated CD8 T cells


title: Activated CD8 T cells replicate 5 [Activate_T_CD8_5]


title: Activated CD8 T cells replicate 4 [Activate_T_CD8_4]


title: C1T28

value: France


title: NC_mono_3

status: Public on Nov 19 2021

city: Verona

first: Francisco

middle: Miguel Angel

last: Bianchetto-Aguilera

state: VR

address: Strade le Grazie, 8

department: Department of Medicine

country: Italy

institute: University of Verona

data_processing:
Reads were quality-filtered according the Illumina pipeline,
Adapters and base quality trimming were performed using Trim Galore script with parameters -length 50, then to improve the quality of the mapping, reads were further trimmed at the 3’ to a length of 72bp using fastx_trimmer from the FASTX-toolkit
reads were mapped onto the Ensembl human transcriptome (version 84) and quantified at the transcript level using Salmon (--validateMappings flag)
transcripts were combined to gene level using tximport packages
Gene counts were normalized among various samples using DESeq2 package
Gene abundance was indicated as FPKM, and genes with FPKM equal or higher than 1 in at least one sample were considered as expressed and further analyzed
Differentially expressed genes were identified using DESeq2, by using as selection parameter an adjusted p-values (padj) lower than 0.01
Genome_build: Ensembl human transcriptome (version 84)
Supplementary_files_format_and_content: Excel file includes FPKM values for each sample

source_name: Blood

extract_protocol:
Total RNA was extracted after cell lysis by the RNeasy Mini Kit (Qiagen, Venlo, Limburg, Netherlands). To completely remove any possible contaminating DNA, an on-column DNase digestion with the RNase-free DNase set (Qiagen) was performed during total RNA isolation.
Libraries for transcriptome analysis were prepared using Smart-seq2 protocol (PMID: 24056875)

tag: treatment

value: Freshly isolated cells

tag: tissue

value: blood

value: "non-classical" (NC) CD14dim/-CD16++ monocytes


title: Activated CD8 T cells replicate 7 [Activate_T_CD8_7]


title: Activated CD8 T cells replicate 3 [Activate_T_CD8_3]


title: NC_mono_2


title: INT_mono_3

value: "intermediate" (INT) CD14++CD16+ monocytes


title: NC_mono_1


title: INT_mono_2


title: INT_mono_1


title: CL_mono_3

value: "classical" (CL) CD14++CD16- monocytes


title: CL_mono_2


title: NK cells replicated 1 [NK_1]


title: CL_mono_1


title: lib36321

status: Public on Jul 28 2021

data_processing:
Base-calling was performed automatically by Illumina real time analysis software and demultiplexing was performed on Illumina BaseSpace.
Hard trimming was performed in Galaxy; 1 3'-end base was removed from all reads using the FASTQ Trimmer tool (v1.0.0)
Quality-based trimming was performed in Galaxy; reads were trimmed from both ends using the FASTQ Quality Trimmer tool (v1.0.0) until minimum base quality for each read was >= 30.
Reads were aligned in Galaxy using the STAR aligner (v2.4.2a)
Read counts per Ensembl gene ID were determined in Galaxy using htseq-count
Sequencing, alignment, and quantitation metrics were obtained for FASTQ, BAM/SAM, and count files in Galaxy using FastQC, Picard, TopHat, Samtools, and htseq-count.
Genome_build: GRCm38
Supplementary_files_format_and_content: raw_counts_P220-1.txt is a tab-delimited matrix. The first column ("geneName") contains Ensembl gene IDs The remaining columns include raw read counts assigned for each library. Counts have not been filtered or normalized.

organism: Mus musculus

source_name: Sorted Cells

growth_protocol:
TCM  100 ml 5x DMEM  5 ml 1M HEPES  5 ml 100x MEM Vitamins 5 ml Glutamax   24.7 ml 7.5% NaHCO3                  5 ml 100x NEAA   5 ml 100x Asn/Arg/Folic 2.5 ml 100x Pen/Strep  345 ml H2O                                  500 ul b-ME  pH to 7.2-7.3                                  50 ml FCS  += 547.7 mL
D0: 96-well Tissue Culture Plate with 100uL anti-murine CD3 and CD28 @ 1 ng/mL store in fridge overnight
D1: Isolate CD4+ and CD62L+ Naïve splenocytes and plate in TCM with treatment
D3: Feed Cells with 100uL of TCM with 20 ng/mL IL2 and respective compounds
D4: Split resuspended cells in half and feed them another 100uL of TCM with 10 ng/mL IL2

extract_protocol:
Cells were sorted directly into 4.7ul Smart-Seq (V4) lysis buffer (Clontech).
Following sorting of cells into Smart-Seq (V4) lysis buffer to prepare amplified cDNA, Illumina NexteraXT libraries were prepared following manufacturer's instructions (Illumina).

tag: cell number

tag: mouse code

tag: Sex

value: M

tag: time point

value: 2 day

tag: sort population

value: GFP+ CD4+

value: DCA + 2 ng/mL TGFB

tag: stimulation


title: lib36331

value: 4 day

tag: collection date


title: lib36333


title: lib36332


title: lib36323


title: lib36329

value: 10 ng/mL TGFB


title: lib36327


title: lib36325


title: lib36328


title: lib36330


title: lib36326


title: lib36316

value: GFP- CD4+

value: 2 ng/mL TGFB


title: lib36317


title: lib36319


title: lib36315


title: lib36314


title: lib36313


title: lib36312


title: lib36301

value: naive

value: CD62L+ GFP- CD4+


title: lib36311


title: lib36299


title: lib36310


title: lib36300


title: HuGene2_062121H_RM2_miR1908-5p miR control D2

status: Public on Jul 14 2021

city: Ottawa

first: Ruth

last: McPherson

state: Ontario

address: 40 Ruskin

country: Canada

institute: UOHI

description:
Expression console values
Mimic ctl repeat 2

hyb_protocol: Samples were hybridized with HuGene-2_0-st  arrays (Affymetrix) and scanned at the Centre for Applied Genomics (TCAG), Toronto

scan_protocol: Array scanning was performed according to the manufacturer's instruction (Affymetrix)

data_processing: Relative expression changes assessed by Expression Console

label: Biotin

source_name: Human primary hepatocytes

label_protocol: Standard Affymetrix protocol

growth_protocol: Cryopreserved human hepatocytes (MTOXH1000 (lot LHuf17912; 32 YO, BMI 23; Sigma) and HMCPMS (lot HU8360; 37 YO, BMI 32 (ThermoFisher Scientific)) were thawed in thawing media and then plated in plating media (Sigma) for 6 hours in 8 wells of 12-well plates pre-coated with collagen I.  Media changed to culture medium (MED-HHCM; Sigma) which was replaced every 24 h.

extract_protocol: Cells were lysed with TriPure Isolation Reagent (Roche) and the total RNA was isolated using the Direct-zol RNA Miniprep Plus Kit (Zymo Research)

treatment_protocol: Hepatocytes were transfected for 72 h with hsa-miR-1908-5p miRIDIAN microRNA  Mimic or its control (Dharmacon) to a final concentration of 9 nM using Lipofectamine® RNAiMAX Reagent.  Repeat 1 and 2 were from MTOXH1000 and repeat 3 from HMCPMS.

value: Human primary hepatocytes

value: control miRNA


title: lib36298


title: 155-1 [lib37367]

status: Public on Apr 01 2021

description:
lib37367
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv

data_processing:
Base-calling was performed using CASAVA v.1.8.2.
FASTQ reads were trimmed using fastq-mcf (ea-utils, v.1.1.2) to remove SMARTer adapter sequences.
Reads were aligned in Galaxy using STAR aligner; duplicate alignments were marked and removed using Picard MarkDuplicates.
Read counts per Ensembl gene ID were estimated in Galaxy using htseq-count (htseq-count tool, v.0.4.1).
Sequencing, alignment, and quantitation metrics were obtained for FASTQ, BAM/SAM, and count files in Galaxy using FastQC, Picard, STAR, Samtools, and htseq-count.
Genome_build: GRCh38 release 91
Supplementary_files_format_and_content: P216-2_CD3JAANXX_190311_combined_counts.csv is a comma-separated value file. The first column contains Ensembl gene IDs. The remaining columns include raw read counts assigned for each library.

source_name: Nasal Brush Epithelial Cell

extract_protocol:
Cells were provided in RLT/1%BME; Dual RNA and DNA extraction (AllPrep Kit).
Reverse transcription was performed followed by PCR amplification to generate full length amplified cDNA. Sequencing libraries were constructed using the NexteraXT DNA sample preparation kit (Illumina) to generate Illumina-compatible barcoded libraries. Libraries were pooled and quantified using a Qubit® Fluorometer (Life Technologies).

value: Nasal brush epithelial cells

tag: age

value: 11 years

value: Female

tag: site

tag: atopy

value: Atopic

value: LW-HA

value: No

tag: total number of cells counted

tag: number of ciliated epithelial cells

tag: percent ciliated epithelial cells

tag: number of non-ciliated epithelial cells

tag: percent non-ciliated epithelial cells

tag: number of leukocytes

tag: percent leukocytes


title: 116-6 [lib37368]

description:
lib37368
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv

tag: cell type

value: Male

value: HW-HA-LF

value: Yes


title: HuGene2_062121H_RM2_miR1908-5p miR control D1

description:
Expression console values
Mimic ctl repeat 1

tag: treatment


title: HuGene2_062121H_RM1_miR1908-5p mimic C2

description:
Expression console values
Mimic repeat 2

value: miR1908-5p mimic


title: HuGene2_062121H_RM1_miR1908-5p mimic C1

description:
Expression console values
Mimic repeat 1


title: BoC237_K1_untreated control

status: Public on May 21 2021

city: Bochum

first: Stephan

middle: A

last: Hahn

address: Universitaetsstrasse 150

department: MGO

country: Germany

institute: Ruhr-University Bochum

hyb_protocol: Samples were hybridized using Agilent 10x blocking agent and 25x fragmentation buffer, and 2xGEx hybridization buffer according to the manufacturer's instructions  for 17 hours at 65C.

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2505B ) using standard settings

data_processing: The scanned images were analyzed with Feature Extraction Software 10.7.3.1 (Agilent) using default parameters (protocol GE2_107_Sep09 and Grid: 026652_D_F_20100430) to obtain background subtracted and spatially detrended Processed Processed Signal intensities.  Features flagged in Feature Extraction as Feature Non-uniform outliers were excluded.

source_name: untreated control

label_protocol: 100 ng of total RNA were labeled using the QuickAmp Labeling Kit (Agilent) according to the manufacturer's instructions, using T7 priming and MMLV-RT to generate cDNA. cRNA is then prepared using T7 RNA Polymerase according to the manufacturer's instructions, and labeled with  cyanine-5-CTP (Cy5)

growth_protocol: Three 1-3 mm tumor pieces of early passage xenograft tumor Bo63 soaked in matrigel were implanted via standard technology subcutaneously on the dorsal flanks of nude mice (two implantation sites per mouse; nu/nu NMRI) to establish treatment and control tumor cohorts.

extract_protocol: Total RNA isolation from 25-30 (20mm) frozen xenograft tumor sections were isolates using the mirVana™ PARIS™ Kit (Applied Biosystems) according to the manufacture`s protocol. RNA integrity was analysed using standard RNA-gel electrophoresis. Total-RNA concentration and purity of total-RNA samples was measured with the NanoDrop 1000 spectrophotometer (NanoDrop Technologies/Thermo Scientific).

treatment_protocol: Nude mice were treated with cetuximab (Merck Serono) by intra peritoneal (i.p.) injection twice per week and dosed at 25mg/kg, treatment was imitated when tumor size reached approc. 100-200 mm³

tag: tissue

value: patient derived colon cancer xenograft tissue

tag: response

value: partial response


title: BoC209_C5_1_cetux-secondary resistant

source_name: cetux-secondary resistant

value: stable disease


title: BoC237_C1_1_cetux-secondary resistant


title: BoC237_K2_untreated control


title: BoC60_5dC3_5_days_cetux_treatment

source_name: cetux treatment


title: BoC237_5dC1_5_days_cetux_treatment


title: BoC237_C5_2_cetux-secondary resistant


title: BoC209_C4_2_cetux-secondary resistant


title: BoC237_C2_2_cetux-secondary resistant


title: BoC60_5dC4_5_days_cetux_treatment


title: BoC60_5dC2_5_days_cetux_treatment


title: 135-2 [lib37366]

description:
lib37366
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv

tag: Sex

tag: fev1/fvc percent


title: 148-9 [lib37365]

description:
lib37365
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv

value: MW-LA


title: BoC209_K1_untreated control


title: BoC209_5dC2_5_days_cetux_treatment


title: BoC237_5dC2_5_days_cetux_treatment


title: BoC209_C4_1_cetux-secondary resistant


title: 132-3 [lib37363]

description:
lib37363
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 143-6 [lib37364]

description:
lib37364
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv

value: LW-LA


title: BoC209_K2_untreated control


title: BoC209_C6_2_cetux-secondary resistant


title: BoC237_C2_1_cetux-secondary resistant


title: HuGene2_062121H_RM2_miR1908-5p miR control D3

description:
Expression console values
Mimic ctl repeat 3

value: Human primary hepatocytes


title: BoC209_5dC1_5_days_cetux_treatment


title: BoC209_C5_2_cetux-secondary resistant


title: BoC237_C5_1_cetux-secondary resistant


title: BoC209_C6_1_cetux-secondary resistant


title: BoC237_C1_2_cetux-secondary resistant


title: HuGene2_062121H_RM1_miR1908-5p mimic C3

description:
Expression console values
Mimic repeat 3


title: 103-8 [lib37361]

description:
lib37361
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 084-7 [lib37360]

description:
lib37360
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 174-5 [lib37358]

description:
lib37358
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 177-8 [lib37354]

description:
lib37354
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv

value: Non-atopic


title: 085-2 [lib37355]

description:
lib37355
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv

value: Nasal brush epithelial cells


title: 178-4 [lib37356]

description:
lib37356
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv

value: 11 years


title: 082-3 [lib37359]

description:
lib37359
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv

value: Female


title: 165-9 [lib37352]

description:
lib37352
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 161-6 [lib37349]

description:
lib37349
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv

value: Atopic

value: TW-LA


title: 168-5 [lib37348]

description:
lib37348
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv

value: No


title: 173-2 [lib37353]

description:
lib37353
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 159-4 [lib37351]

description:
lib37351
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv

value: Male


title: 076-5 [lib37347]

description:
lib37347
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv

value: HW-HA-LF


title: 163-7 [lib37350]

description:
lib37350
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 092-1 [lib37362]

description:
lib37362
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 149-1 [lib37339]

description:
lib37339
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 151-8 [lib37344]

description:
lib37344
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 055-5 [lib37340]

description:
lib37340
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 060-4 [lib37342]

description:
lib37342
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 170-9 [lib37343]

description:
lib37343
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 160-0 [lib37345]

description:
lib37345
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 119-4 [lib37337]

description:
lib37337
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv

value: LW-HA


title: 113-9 [lib37336]

description:
lib37336
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 102-8 [lib37335]

description:
lib37335
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv

value: Yes


title: 147-2 [lib37332]

description:
lib37332
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 110-2 [lib37333]

description:
lib37333
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 080-5 [lib37334]

description:
lib37334
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 042-8 [lib37331]

description:
lib37331
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 120-5 [lib37328]

description:
lib37328
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 136-5 [lib37327]

description:
lib37327
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 158-7 [lib37341]

description:
lib37341
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 154-6 [lib37317]

description:
lib37317
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 074-3 [lib37321]

description:
lib37321
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 176-6 [lib37357]

description:
lib37357
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 144-0 [lib37326]

description:
lib37326
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 141-7 [lib37324]

description:
lib37324
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 165-3 [lib37318]

description:
lib37318
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 152-2 [lib37316]

description:
lib37316
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 084-0 [lib37313]

description:
lib37313
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 089-3 [lib37312]

description:
lib37312
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 045-0 [lib37303]

description:
lib37303
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 064-9 [lib37309]

description:
lib37309
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 061-2 [lib37305]

description:
lib37305
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 059-9 [lib37311]

description:
lib37311
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 044-5 [lib37302]

description:
lib37302
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 082-9 [lib37308]

description:
lib37308
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 139-6 [lib37329]

description:
lib37329
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 133-1 [lib37325]

description:
lib37325
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 166-9 [lib37319]

description:
lib37319
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 053-4 [lib37304]

description:
lib37304
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 051-9 [lib37282]

description:
lib37282
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 019-3 [lib37288]

description:
lib37288
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 093-5 [lib37300]

description:
lib37300
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 034-5 [lib37296]

description:
lib37296
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 029-9 [lib37292]

description:
lib37292
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv

value: HW-HA


title: 048-5 [lib37286]

description:
lib37286
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 035-0 [lib37294]

description:
lib37294
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 031-3 [lib37295]

description:
lib37295
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 023-4 [lib37290]

description:
lib37290
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 057-4 [lib37287]

description:
lib37287
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 055-7 [lib37283]

description:
lib37283
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 027-5 [lib37291]

description:
lib37291
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 048-4 [lib37299]

description:
lib37299
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 054-7 [lib37301]

description:
lib37301
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 045-9 [lib37279]

description:
lib37279
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 036-6 [lib37297]

description:
lib37297
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 046-3 [lib37281]

description:
lib37281
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 040-0 [lib37278]

description:
lib37278
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 030-9 [lib37293]

description:
lib37293
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 030-7 [lib37276]

description:
lib37276
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 038-2 [lib37277]

description:
lib37277
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 019-1 [lib37275]

description:
lib37275
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 023-2 [lib37274]

description:
lib37274
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 153-9 [lib37273]

description:
lib37273
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 024-7 [lib37289]

description:
lib37289
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 145-8 [lib37272]

description:
lib37272
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 054-2 [lib37285]

description:
lib37285
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 058-8 [lib37284]

description:
lib37284
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 150-2 [lib37271]

description:
lib37271
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 047-1 [lib37280]

description:
lib37280
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 138-1 [lib37269]

description:
lib37269
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv


title: 140-4 [lib37268]

description:
lib37268
PolyA RNA
processed data file: P216-2_CD3JAANXX_190311_combined_counts.csv