title: SP_m265

description:
experiment9
counts_LPS_KO.txt


title: SP_m263

status: Public on Jan 08 2024

type: SRA

city: Chicago

first: Michihiro

last: Takahama

state: Illinois

department: Pritzker School of Molecular Engineering

country: USA

institute: University of Chicago

description:
experiment9
counts_LPS_KO.txt

library_source: transcriptomic

data_processing:
We used the RNA-seq pipeline in the bcbio-nextgen project version 1.1.5 (https://bcbio-nextgen.readthedocs.io/en/latest/).
Reads were aligned to the mouse mm10 transcriptomes with RapMap.
Transcripts were counted with fasttagcount in umis (https://github.com/vals/umis).
Quality control metrics were compiled with a combination of FastQC (http:bioinformatics.babraham.ac.uk/projects/fastqc/) and MultiQC (https://github.com/ewels/MultiQC).
Assembly: mm10
Supplementary files format and content: counts_LPS_timecourse.txt: counts matrix from experiment1
Supplementary files format and content: counts_CLP.txt: counts matrix from experiment2
Supplementary files format and content: counts_Cytokine_combo.txt: counts matrix from experiment3
Supplementary files format and content: counts_Cytokine_combo2.txt: counts matrix from experiment4
Supplementary files format and content: counts_LPS_LPA.txt: counts matrix from experiment5
Supplementary files format and content: counts_LPS_antiPla2g5.txt: counts matrix from experiment6
Supplementary files format and content: counts_LPS_Plasma.txt: counts matrix from experiment7
Supplementary files format and content: counts_LPS_DEX.txt: counts matrix from experiment8
Supplementary files format and content: counts_LPS_KO.txt: counts matrix from experiment9
Supplementary files format and content: counts_LPS_KO2.txt: counts matrix from experiment10

molecule: polyA RNA

organism: Mus musculus

source_name: Lung

extract_protocol:
Whole-tissue RNA extraction was performed as described previously (Surya et al., 2020). Briefly, tissues stored in RNA-preserving solution were thawed and transferred to 2 mL tubes containing 700-1500 µL (depending on tissue) of PureZOL (Bio-Rad, 7326890) or homemade Trizol-like solution (38% phenol, 0.8 M guanidine thiocyanate, 0.4 M ammonium thiocyanate, 0.1 M sodium acetate, 5% glycerol). Tissues were lysed by adding 2.8-mm ceramic beads (OMNI International, 19-646) and running 1-3 cycles of 5-45 s at 3500 rpm on the PowerLyzer 24 (QIAGEN). For liver, brain, and small intestine samples, tissues were lysed with 3-5 mL using M tubes (Miltenyi biotec, 130-096-335) and running 1-4 cycles of the RNA_02.01 program on the gentleMACS Octo Dissociator (Miltenyi biotec). Next, lysates were processed in deep 96-well plates (USA Scientific 1896-2000) by adding chloroform for phase separation by centrifugation, followed by precipitation of total RNA in the aqueous phase using magnetic beads coated with silane (Dynabeads MyOne Silane; TermoFisher Scientific 37002D), buffer RLT (QIAGEN 79216), and ethanol. Genomic DNA contamination was removed by on-bead DNase I (ThermoFisher Scientific AM2239) treatment at 37 °C for 20 min. After washing steps with 80% ethanol, RNA was eluted from beads. This RNA extraction protocol was performed on the Bravo Automated Liquid Handling Platform (Agilent). Sample concentrations were measured using a Nanodrop One (Termo Scientific). RNA quality was confirmed using a Tapestation 4200 (Agilent Technologies).
For each tissue sample, full-length cDNA was synthesized in 20 µl final reaction volume containing the following: (1) 10 µl of 10 ng/µl RNA; (2) 1 µl containing 2 pmoles of a custom RT primer biotinylated in 5’ and containing sequences from 5’ to 3’ for the Illumina read 1 primer, a 6-bp sample barcode (up to 384), a 10-bp unique molecular identifier (UMI), and an anchored oligo(dT)30 for priming; and (3) 9 µl of RT mix containing 4 µl of 5X RT buffer, 1 µl of 10 mM dNTPs, 2 pmoles of template switching oligo (TSO), and 0.25 µl of Maxima H Minus Reverse Trascriptase (Thermo Scientific, EP0753). First, barcoded RT primers were added to RNA, which were then denatured at 72°C for 1 min and snap cooled on ice. Second, the RT mix was added, and plates were incubated at 42°C for 120 min. For each library, double stranded cDNA from up to 384 samples were pooled using DNA Clean & Concentrator-5 columns (Zymo Research, D4013), and residual RT primers were removed using exonuclease I (New England Biolabs, M0293). Full-length cDNAs were amplified with 5 to 8 cycles of single-primer PCR using the Advantage 2 PCR Kit (clontech 639206) and cleaned up using SPRIselect magnetic beads (Beckman Coulter B23318). cDNA was quantified with a Qubit dsDNA High Sensitivity Assay Kit (ThermoFisher Scientific 32851) and 50 ng of cDNA per pool of samples was tagmented using the Tagment DNA Enzyme I (Illumina 20034197) and amplified using the NEBNext Ultra II Q5 Master Mix (NEW ENGLAND BioLabs M0544L). Libraries were gel purified using 2% E-Gel EX Agarose Gels (ThermoFisher Scientific G402002), quantified with a Qubit dsDNA High Sensitivity Assay Kit (ThermoFisher Scientific Q32851) and a Tapestation 4200 (Agilent Technologies), and sequenced on the NextSeq 550 platform (Illumina).

tag: tissue

value: Spleen

tag: genotype

value: TNF KO

tag: treatment


title: TH_m274

description:
experiment9
counts_LPS_KO.txt

source_name: Spleen

value: Thymus

value: IRF1 KO


title: SP_m258

description:
experiment9
counts_LPS_KO.txt

source_name: Liver

value: Wild type


title: LU_m273

description:
experiment9
counts_LPS_KO.txt

value: Lung


title: SP_m261

description:
experiment9
counts_LPS_KO.txt


title: LU_m261

description:
experiment9
counts_LPS_KO.txt

source_name: Kidney


title: SP_m262

description:
experiment9
counts_LPS_KO.txt


title: LU_m263

description:
experiment9
counts_LPS_KO.txt


title: LU_m271

description:
experiment9
counts_LPS_KO.txt


title: LU_m259

description:
experiment9
counts_LPS_KO.txt


title: SP_m255

description:
experiment9
counts_LPS_KO.txt


title: SP_m260

description:
experiment9
counts_LPS_KO.txt


title: LU_m258

description:
experiment9
counts_LPS_KO.txt


title: LU_m274

description:
experiment9
counts_LPS_KO.txt


title: SP_m259

description:
experiment9
counts_LPS_KO.txt


title: LU_m262

description:
experiment9
counts_LPS_KO.txt


title: LU_m260

description:
experiment9
counts_LPS_KO.txt


title: LI_m273

description:
experiment9
counts_LPS_KO.txt

value: Liver


title: LI_m274

description:
experiment9
counts_LPS_KO.txt


title: LU_m255

description:
experiment9
counts_LPS_KO.txt


title: LI_m271

description:
experiment9
counts_LPS_KO.txt


title: SP_m271

description:
experiment9
counts_LPS_KO.txt


title: TH_m259

description:
experiment9
counts_LPS_KO.txt


title: TH_m255

description:
experiment9
counts_LPS_KO.txt


title: LI_m262

description:
experiment9
counts_LPS_KO.txt

source_name: Inguinal lymph node


title: LI_m263

description:
experiment9
counts_LPS_KO.txt


title: LI_m264

description:
experiment9
counts_LPS_KO.txt


title: LI_m261

description:
experiment9
counts_LPS_KO.txt


title: LU_m265

description:
experiment9
counts_LPS_KO.txt


title: LU_m264

description:
experiment9
counts_LPS_KO.txt


title: LI_m260

description:
experiment9
counts_LPS_KO.txt


title: LI_m255

description:
experiment9
counts_LPS_KO.txt


title: LI_m258

description:
experiment9
counts_LPS_KO.txt


title: KI_m274

description:
experiment9
counts_LPS_KO.txt

value: Kidney


title: KI_m273

description:
experiment9
counts_LPS_KO.txt


title: KI_m271

description:
experiment9
counts_LPS_KO.txt


title: KI_m265

description:
experiment9
counts_LPS_KO.txt


title: KI_m262

description:
experiment9
counts_LPS_KO.txt

source_name: Heart


title: KI_m261

description:
experiment9
counts_LPS_KO.txt


title: KI_m263

description:
experiment9
counts_LPS_KO.txt


title: KI_m260

description:
experiment9
counts_LPS_KO.txt


title: KI_m259

description:
experiment9
counts_LPS_KO.txt


title: iLN_m273

description:
experiment9
counts_LPS_KO.txt

value: Inguinal lymph node


title: KI_m255

description:
experiment9
counts_LPS_KO.txt


title: KI_m258

description:
experiment9
counts_LPS_KO.txt


title: LI_m265

description:
experiment9
counts_LPS_KO.txt


title: iLN_m271

description:
experiment9
counts_LPS_KO.txt


title: iLN_m274

description:
experiment9
counts_LPS_KO.txt


title: iLN_m260

description:
experiment9
counts_LPS_KO.txt

source_name: Bone marrow


title: iLN_m265

description:
experiment9
counts_LPS_KO.txt


title: iLN_m264

description:
experiment9
counts_LPS_KO.txt


title: iLN_m263

description:
experiment9
counts_LPS_KO.txt


title: iLN_m261

description:
experiment9
counts_LPS_KO.txt


title: iLN_m259

description:
experiment9
counts_LPS_KO.txt


title: iLN_m258

description:
experiment9
counts_LPS_KO.txt


title: iLN_m262

description:
experiment9
counts_LPS_KO.txt


title: iLN_m255

description:
experiment9
counts_LPS_KO.txt


title: HE_m274

description:
experiment9
counts_LPS_KO.txt

value: Heart


title: HE_m273

description:
experiment9
counts_LPS_KO.txt


title: HE_m265

description:
experiment9
counts_LPS_KO.txt


title: HE_m264

description:
experiment9
counts_LPS_KO.txt


title: HE_m271

description:
experiment9
counts_LPS_KO.txt


title: HE_m261

description:
experiment8
counts_LPS_DEX.txt

source_name: Thymus


title: HE_m260

description:
experiment8
counts_LPS_DEX.txt


title: HE_m262

description:
experiment8
counts_LPS_DEX.txt


title: HE_m259

description:
experiment8
counts_LPS_DEX.txt


title: BM_m265

description:
experiment8
counts_LPS_DEX.txt

value: Bone marrow


title: BM_m273

description:
experiment8
counts_LPS_DEX.txt


title: BM_m263

description:
experiment8
counts_LPS_DEX.txt


title: BM_m262

description:
experiment8
counts_LPS_DEX.txt

source_name: Skin


title: BM_m264

description:
experiment8
counts_LPS_DEX.txt


title: TH_m245

description:
experiment8
counts_LPS_DEX.txt

source_name: Small intestine


title: TH_m243

description:
experiment8
counts_LPS_DEX.txt


title: BM_m260

description:
experiment8
counts_LPS_DEX.txt


title: TH_m242

description:
experiment8
counts_LPS_DEX.txt


title: BM_m258

description:
experiment8
counts_LPS_DEX.txt


title: TH_m246

description:
experiment8
counts_LPS_DEX.txt


title: BM_m255

description:
experiment8
counts_LPS_DEX.txt


title: TH_m239

description:
experiment8
counts_LPS_DEX.txt


title: HE_m263

description:
experiment9
counts_LPS_KO.txt


title: TH_m244

description:
experiment8
counts_LPS_DEX.txt


title: HE_m255

description:
experiment8
counts_LPS_DEX.txt


title: LI_m259

description:
experiment9
counts_LPS_KO.txt


title: BM_m274

description:
experiment8
counts_LPS_DEX.txt


title: SP_m244

description:
experiment8
counts_LPS_DEX.txt


title: SP_m245

description:
experiment8
counts_LPS_DEX.txt


title: SP_m246

description:
experiment8
counts_LPS_DEX.txt


title: TH_m240

description:
experiment8
counts_LPS_DEX.txt


title: SP_m243

description:
experiment8
counts_LPS_DEX.txt


title: BM_m272

description:
experiment8
counts_LPS_DEX.txt


title: SP_m241

description:
experiment8
counts_LPS_DEX.txt


title: BM_m261

description:
experiment8
counts_LPS_DEX.txt


title: SP_m242

description:
experiment8
counts_LPS_DEX.txt


title: SP_m240

description:
experiment8
counts_LPS_DEX.txt


title: TH_m241

description:
experiment8
counts_LPS_DEX.txt


title: SK_m244

description:
experiment8
counts_LPS_DEX.txt

value: Skin


title: SK_m242

description:
experiment8
counts_LPS_DEX.txt


title: SP_m239

description:
experiment8
counts_LPS_DEX.txt


title: SI_m246

description:
experiment8
counts_LPS_DEX.txt

value: Small intestine


title: SK_m240

description:
experiment8
counts_LPS_DEX.txt


title: SK_m239

description:
experiment8
counts_LPS_DEX.txt


title: SK_m246

description:
experiment8
counts_LPS_DEX.txt


title: SK_m245

description:
experiment8
counts_LPS_DEX.txt


title: SK_m241

description:
experiment8
counts_LPS_DEX.txt


title: SK_m243

description:
experiment8
counts_LPS_DEX.txt


title: SI_m241

description:
experiment8
counts_LPS_DEX.txt


title: SI_m243

description:
experiment8
counts_LPS_DEX.txt


title: SI_m239

description:
experiment8
counts_LPS_DEX.txt


title: LU_m245

description:
experiment8
counts_LPS_DEX.txt


title: LU_m244

description:
experiment8
counts_LPS_DEX.txt


title: SI_m245

description:
experiment8
counts_LPS_DEX.txt


title: LI_m244

description:
experiment8
counts_LPS_DEX.txt


title: SI_m244

description:
experiment8
counts_LPS_DEX.txt


title: SI_m242

description:
experiment8
counts_LPS_DEX.txt


title: LI_m240

description:
experiment8
counts_LPS_DEX.txt


title: LI_m242

description:
experiment8
counts_LPS_DEX.txt


title: LU_m246

description:
experiment8
counts_LPS_DEX.txt


title: LI_m241

description:
experiment8
counts_LPS_DEX.txt


title: LU_m241

description:
experiment8
counts_LPS_DEX.txt


title: KI_m245

description:
experiment8
counts_LPS_DEX.txt

source_name: Colon


title: SI_m240

description:
experiment8
counts_LPS_DEX.txt


title: LU_m243

description:
experiment8
counts_LPS_DEX.txt


title: KI_m243

description:
experiment8
counts_LPS_DEX.txt


title: LU_m239

description:
experiment8
counts_LPS_DEX.txt


title: LI_m246

description:
experiment8
counts_LPS_DEX.txt


title: KI_m242

description:
experiment8
counts_LPS_DEX.txt


title: iLN_m246

description:
experiment8
counts_LPS_DEX.txt

source_name: Brain


title: LU_m240

description:
experiment8
counts_LPS_DEX.txt


title: iLN_m244

description:
experiment8
counts_LPS_DEX.txt


title: LI_m243

description:
experiment8
counts_LPS_DEX.txt


title: LI_m245

description:
experiment8
counts_LPS_DEX.txt


title: KI_m240

description:
experiment8
counts_LPS_DEX.txt


title: iLN_m243

description:
experiment8
counts_LPS_DEX.txt


title: KI_m244

description:
experiment8
counts_LPS_DEX.txt


title: LI_m239

description:
experiment8
counts_LPS_DEX.txt


title: KI_m239

description:
experiment8
counts_LPS_DEX.txt


title: iLN_m245

description:
experiment8
counts_LPS_DEX.txt


title: iLN_m239

description:
experiment8
counts_LPS_DEX.txt


title: iLN_m241

description:
experiment8
counts_LPS_DEX.txt


title: iLN_m240

description:
experiment8
counts_LPS_DEX.txt


title: HE_m245

description:
experiment8
counts_LPS_DEX.txt


title: iLN_m242

description:
experiment8
counts_LPS_DEX.txt


title: HE_m246

description:
experiment8
counts_LPS_DEX.txt


title: HE_m244

description:
experiment8
counts_LPS_DEX.txt


title: HE_m241

description:
experiment8
counts_LPS_DEX.txt


title: CO_m244

description:
experiment7
counts_LPS_Plasma.txt

value: Colon


title: HE_m240

description:
experiment8
counts_LPS_DEX.txt


title: CO_m245

description:
experiment7
counts_LPS_Plasma.txt


title: CO_m242

description:
experiment7
counts_LPS_Plasma.txt


title: CO_m246

description:
experiment7
counts_LPS_Plasma.txt


title: CO_m240

description:
experiment7
counts_LPS_Plasma.txt


title: HE_m239

description:
experiment8
counts_LPS_DEX.txt


title: CO_m243

description:
experiment7
counts_LPS_Plasma.txt


title: CO_m239

description:
experiment7
counts_LPS_Plasma.txt


title: BR_m245

description:
experiment7
counts_LPS_Plasma.txt

value: Brain


title: CO_m241

description:
experiment7
counts_LPS_Plasma.txt


title: BR_m244

description:
experiment7
counts_LPS_Plasma.txt


title: BR_m243

description:
experiment7
counts_LPS_Plasma.txt


title: BR_m241

description:
experiment7
counts_LPS_Plasma.txt


title: BR_m242

description:
experiment7
counts_LPS_Plasma.txt


title: BR_m240

description:
experiment7
counts_LPS_Plasma.txt


title: BR_m239

description:
experiment7
counts_LPS_Plasma.txt


title: HE_m243

description:
experiment8
counts_LPS_DEX.txt


title: BM_m246

description:
experiment7
counts_LPS_Plasma.txt


title: BM_m245

description:
experiment7
counts_LPS_Plasma.txt


title: HE_m242

description:
experiment8
counts_LPS_DEX.txt


title: BM_m242

description:
experiment7
counts_LPS_Plasma.txt


title: HE_m258

description:
experiment8
counts_LPS_DEX.txt


title: BM_m243

description:
experiment7
counts_LPS_Plasma.txt


title: BR_m246

description:
experiment7
counts_LPS_Plasma.txt


title: TH_m233

description:
experiment7
counts_LPS_Plasma.txt


title: BM_m241

description:
experiment7
counts_LPS_Plasma.txt


title: TH_m231

description:
experiment7
counts_LPS_Plasma.txt


title: TH_m230

description:
experiment7
counts_LPS_Plasma.txt


title: TH_m232

description:
experiment7
counts_LPS_Plasma.txt


title: TH_m229

description:
experiment7
counts_LPS_Plasma.txt


title: TH_m234

description:
experiment7
counts_LPS_Plasma.txt


title: BM_m240

description:
experiment7
counts_LPS_Plasma.txt


title: TH_m228

description:
experiment7
counts_LPS_Plasma.txt


title: TH_m226

description:
experiment7
counts_LPS_Plasma.txt


title: TH_m227

description:
experiment7
counts_LPS_Plasma.txt


title: TH_m225

description:
experiment7
counts_LPS_Plasma.txt


title: SP_m233

description:
experiment7
counts_LPS_Plasma.txt


title: LU_m242

description:
experiment8
counts_LPS_DEX.txt


title: SP_m231

description:
experiment7
counts_LPS_Plasma.txt


title: SP_m232

description:
experiment7
counts_LPS_Plasma.txt


title: SP_m230

description:
experiment7
counts_LPS_Plasma.txt


title: BM_m244

description:
experiment7
counts_LPS_Plasma.txt


title: SP_m227

description:
experiment7
counts_LPS_Plasma.txt


title: SP_m229

description:
experiment7
counts_LPS_Plasma.txt


title: KI_m241

description:
experiment8
counts_LPS_DEX.txt


title: SP_m234

description:
experiment7
counts_LPS_Plasma.txt


title: LU_m233

description:
experiment7
counts_LPS_Plasma.txt


title: SP_m225

description:
experiment7
counts_LPS_Plasma.txt


title: LU_m226

description:
experiment7
counts_LPS_Plasma.txt


title: SP_m226

description:
experiment7
counts_LPS_Plasma.txt


title: LU_m227

description:
experiment7
counts_LPS_Plasma.txt


title: LI_m234

description:
experiment7
counts_LPS_Plasma.txt


title: LU_m234

description:
experiment7
counts_LPS_Plasma.txt


title: BM_m239

description:
experiment7
counts_LPS_Plasma.txt


title: LI_m231

description:
experiment7
counts_LPS_Plasma.txt


title: KI_m246

description:
experiment8
counts_LPS_DEX.txt


title: LI_m233

description:
experiment7
counts_LPS_Plasma.txt


title: LI_m228

description:
experiment7
counts_LPS_Plasma.txt


title: LU_m232

description:
experiment7
counts_LPS_Plasma.txt


title: LU_m231

description:
experiment7
counts_LPS_Plasma.txt


title: KI_m232

description:
experiment7
counts_LPS_Plasma.txt


title: KI_m231

description:
experiment7
counts_LPS_Plasma.txt


title: LU_m229

description:
experiment7
counts_LPS_Plasma.txt


title: LU_m228

description:
experiment7
counts_LPS_Plasma.txt


title: LU_m230

description:
experiment7
counts_LPS_Plasma.txt


title: LI_m226

description:
experiment7
counts_LPS_Plasma.txt


title: LU_m225

description:
experiment7
counts_LPS_Plasma.txt


title: LI_m232

description:
experiment7
counts_LPS_Plasma.txt


title: LI_m229

description:
experiment7
counts_LPS_Plasma.txt


title: KI_m226

description:
experiment7
counts_LPS_Plasma.txt


title: LI_m225

description:
experiment7
counts_LPS_Plasma.txt


title: KI_m227

description:
experiment7
counts_LPS_Plasma.txt


title: KI_m228

description:
experiment7
counts_LPS_Plasma.txt


title: iLN_m233

description:
experiment7
counts_LPS_Plasma.txt


title: LI_m230

description:
experiment7
counts_LPS_Plasma.txt


title: KI_m234

description:
experiment7
counts_LPS_Plasma.txt


title: SP_m228

description:
experiment7
counts_LPS_Plasma.txt


title: KI_m233

description:
experiment7
counts_LPS_Plasma.txt


title: iLN_m231

description:
experiment7
counts_LPS_Plasma.txt


title: iLN_m232

description:
experiment7
counts_LPS_Plasma.txt


title: iLN_m229

description:
experiment7
counts_LPS_Plasma.txt


title: KI_m230

description:
experiment7
counts_LPS_Plasma.txt


title: iLN_m230

description:
experiment7
counts_LPS_Plasma.txt


title: iLN_m228

description:
experiment7
counts_LPS_Plasma.txt


title: HE_m231

description:
experiment7
counts_LPS_Plasma.txt


title: KI_m229

description:
experiment7
counts_LPS_Plasma.txt


title: iLN_m227

description:
experiment7
counts_LPS_Plasma.txt


title: LI_m227

description:
experiment7
counts_LPS_Plasma.txt


title: iLN_m225

description:
experiment7
counts_LPS_Plasma.txt


title: iLN_m226

description:
experiment7
counts_LPS_Plasma.txt


title: HE_m233

description:
experiment7
counts_LPS_Plasma.txt


title: HE_m234

description:
experiment7
counts_LPS_Plasma.txt


title: iLN_m234

description:
experiment7
counts_LPS_Plasma.txt


title: HE_m232

description:
experiment7
counts_LPS_Plasma.txt


title: CO_m234

description:
experiment6
counts_LPS_antiPla2g5.txt


title: CO_m233

description:
experiment6
counts_LPS_antiPla2g5.txt


title: HE_m229

description:
experiment7
counts_LPS_Plasma.txt


title: HE_m230

description:
experiment7
counts_LPS_Plasma.txt


title: HE_m227

description:
experiment6
counts_LPS_antiPla2g5.txt


title: CO_m229

description:
experiment6
counts_LPS_antiPla2g5.txt


title: CO_m230

description:
experiment6
counts_LPS_antiPla2g5.txt


title: CO_m228

description:
experiment6
counts_LPS_antiPla2g5.txt


title: CO_m227

description:
experiment6
counts_LPS_antiPla2g5.txt


title: HE_m228

description:
experiment6
counts_LPS_antiPla2g5.txt


title: HE_m226

description:
experiment6
counts_LPS_antiPla2g5.txt


title: KI_m225

description:
experiment7
counts_LPS_Plasma.txt


title: CO_m226

description:
experiment6
counts_LPS_antiPla2g5.txt


title: CO_m231

description:
experiment6
counts_LPS_antiPla2g5.txt


title: CO_m232

description:
experiment6
counts_LPS_antiPla2g5.txt


title: BM_m232

description:
experiment6
counts_LPS_antiPla2g5.txt


title: BM_m228

description:
experiment6
counts_LPS_antiPla2g5.txt


title: BM_m229

description:
experiment6
counts_LPS_antiPla2g5.txt


title: TH_m223

description:
experiment6
counts_LPS_antiPla2g5.txt


title: CO_m225

description:
experiment6
counts_LPS_antiPla2g5.txt


title: BM_m234

description:
experiment6
counts_LPS_antiPla2g5.txt


title: BM_m227

description:
experiment6
counts_LPS_antiPla2g5.txt


title: BM_m225

description:
experiment6
counts_LPS_antiPla2g5.txt


title: TH_m224

description:
experiment6
counts_LPS_antiPla2g5.txt


title: TH_m219

description:
experiment6
counts_LPS_antiPla2g5.txt


title: TH_m220

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SP_m220

description:
experiment6
counts_LPS_antiPla2g5.txt


title: BM_m226

description:
experiment6
counts_LPS_antiPla2g5.txt


title: BM_m231

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SP_m224

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SP_m223

description:
experiment6
counts_LPS_antiPla2g5.txt


title: TH_m218

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SP_m221

description:
experiment6
counts_LPS_antiPla2g5.txt


title: TH_m222

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SK_m224

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SP_m222

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SP_m218

description:
experiment6
counts_LPS_antiPla2g5.txt


title: BM_m233

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SK_m222

description:
experiment6
counts_LPS_antiPla2g5.txt


title: BM_m230

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SK_m223

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SK_m220

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SK_m221

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SK_m218

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SK_m219

description:
experiment6
counts_LPS_antiPla2g5.txt


title: TH_m221

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SK_m217

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SI_m224

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SI_m223

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SI_m222

description:
experiment6
counts_LPS_antiPla2g5.txt


title: HE_m225

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SI_m221

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SI_m220

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SP_m219

description:
experiment6
counts_LPS_antiPla2g5.txt


title: LU_m224

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SI_m219

description:
experiment6
counts_LPS_antiPla2g5.txt


title: LU_m223

description:
experiment6
counts_LPS_antiPla2g5.txt


title: LI_m222

description:
experiment6
counts_LPS_antiPla2g5.txt


title: LI_m221

description:
experiment6
counts_LPS_antiPla2g5.txt


title: LI_m223

description:
experiment6
counts_LPS_antiPla2g5.txt


title: LU_m219

description:
experiment6
counts_LPS_antiPla2g5.txt


title: LU_m218

description:
experiment6
counts_LPS_antiPla2g5.txt


title: LI_m224

description:
experiment6
counts_LPS_antiPla2g5.txt


title: LU_m220

description:
experiment6
counts_LPS_antiPla2g5.txt


title: LI_m220

description:
experiment6
counts_LPS_antiPla2g5.txt


title: LI_m219

description:
experiment6
counts_LPS_antiPla2g5.txt


title: LU_m221

description:
experiment6
counts_LPS_antiPla2g5.txt


title: LI_m217

description:
experiment6
counts_LPS_antiPla2g5.txt


title: KI_m224

description:
experiment6
counts_LPS_antiPla2g5.txt


title: KI_m223

description:
experiment6
counts_LPS_antiPla2g5.txt


title: LI_m218

description:
experiment6
counts_LPS_antiPla2g5.txt


title: KI_m221

description:
experiment6
counts_LPS_antiPla2g5.txt


title: KI_m222

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SI_m218

description:
experiment6
counts_LPS_antiPla2g5.txt


title: KI_m220

description:
experiment6
counts_LPS_antiPla2g5.txt


title: KI_m218

description:
experiment6
counts_LPS_antiPla2g5.txt


title: SI_m217

description:
experiment6
counts_LPS_antiPla2g5.txt


title: LU_m222

description:
experiment6
counts_LPS_antiPla2g5.txt


title: iLN_m223

description:
experiment6
counts_LPS_antiPla2g5.txt


title: iLN_m224

description:
experiment6
counts_LPS_antiPla2g5.txt


title: KI_m219

description:
experiment6
counts_LPS_antiPla2g5.txt


title: iLN_m221

description:
experiment6
counts_LPS_antiPla2g5.txt


title: iLN_m222

description:
experiment6
counts_LPS_antiPla2g5.txt


title: iLN_m220

description:
experiment6
counts_LPS_antiPla2g5.txt


title: HE_m224

description:
experiment6
counts_LPS_antiPla2g5.txt


title: iLN_m219

description:
experiment6
counts_LPS_antiPla2g5.txt


title: HE_m221

description:
experiment6
counts_LPS_antiPla2g5.txt


title: HE_m220

description:
experiment6
counts_LPS_antiPla2g5.txt


title: HE_m222

description:
experiment6
counts_LPS_antiPla2g5.txt


title: HE_m219

description:
experiment6
counts_LPS_antiPla2g5.txt


title: CO_m224

description:
experiment5
counts_LPS_LPA_full.txt


title: HE_m218

description:
experiment6
counts_LPS_antiPla2g5.txt


title: iLN_m218

description:
experiment6
counts_LPS_antiPla2g5.txt


title: CO_m222

description:
experiment5
counts_LPS_LPA_full.txt


title: CO_m223

description:
experiment5
counts_LPS_LPA_full.txt


title: CO_m219

description:
experiment5
counts_LPS_LPA_full.txt


title: CO_m220

description:
experiment5
counts_LPS_LPA_full.txt


title: CO_m218

description:
experiment5
counts_LPS_LPA_full.txt


title: BR_m223

description:
experiment5
counts_LPS_LPA_full.txt


title: BR_m224

description:
experiment5
counts_LPS_LPA_full.txt


title: BR_m221

description:
experiment5
counts_LPS_LPA_full.txt


title: BR_m222

description:
experiment5
counts_LPS_LPA_full.txt


title: BR_m219

description:
experiment5
counts_LPS_LPA_full.txt


title: BM_m223

description:
experiment5
counts_LPS_LPA_full.txt


title: BR_m220

description:
experiment5
counts_LPS_LPA_full.txt


title: BR_m218

description:
experiment5
counts_LPS_LPA_full.txt


title: BM_m224

description:
experiment5
counts_LPS_LPA_full.txt


title: HE_m223

description:
experiment6
counts_LPS_antiPla2g5.txt


title: HE_m217

description:
experiment6
counts_LPS_antiPla2g5.txt


title: BM_m219

description:
experiment5
counts_LPS_LPA_full.txt


title: BM_m218

description:
experiment5
counts_LPS_LPA_full.txt


title: BM_m217

description:
experiment5
counts_LPS_LPA_full.txt


title: TH_m215

description:
experiment5
counts_LPS_LPA_full.txt


title: BM_m221

description:
experiment5
counts_LPS_LPA_full.txt


title: TH_m216

description:
experiment5
counts_LPS_LPA_full.txt


title: BM_m220

description:
experiment5
counts_LPS_LPA_full.txt


title: CO_m221

description:
experiment5
counts_LPS_LPA_full.txt


title: TH_m183

description:
experiment5
counts_LPS_LPA_full.txt


title: SP_m215

description:
experiment5
counts_LPS_LPA_full.txt


title: SP_m214

description:
experiment5
counts_LPS_LPA_full.txt


title: TH_m184

description:
experiment5
counts_LPS_LPA_full.txt


title: TH_m213

description:
experiment5
counts_LPS_LPA_full.txt


title: TH_m182

description:
experiment5
counts_LPS_LPA_full.txt


title: SP_m213

description:
experiment5
counts_LPS_LPA_full.txt


title: SP_m184

description:
experiment5
counts_LPS_LPA_full.txt


title: SP_m216

description:
experiment5
counts_LPS_LPA_full.txt


title: TH_m181

description:
experiment5
counts_LPS_LPA_full.txt


title: BR_m217

description:
experiment5
counts_LPS_LPA_full.txt


title: SP_m182

description:
experiment5
counts_LPS_LPA_full.txt


title: SP_m183

description:
experiment5
counts_LPS_LPA_full.txt


title: BM_m222

description:
experiment5
counts_LPS_LPA_full.txt


title: LU_m213

description:
experiment5
counts_LPS_LPA_full.txt


title: SP_m181

description:
experiment5
counts_LPS_LPA_full.txt


title: LU_m216

description:
experiment5
counts_LPS_LPA_full.txt


title: LU_m215

description:
experiment5
counts_LPS_LPA_full.txt


title: LU_m182

description:
experiment5
counts_LPS_LPA_full.txt


title: LU_m214

description:
experiment5
counts_LPS_LPA_full.txt


title: LU_m183

description:
experiment5
counts_LPS_LPA_full.txt


title: TH_m214

description:
experiment5
counts_LPS_LPA_full.txt


title: LI_m216

description:
experiment5
counts_LPS_LPA_full.txt


title: LI_m214

description:
experiment5
counts_LPS_LPA_full.txt


title: LI_m184

description:
experiment5
counts_LPS_LPA_full.txt


title: LU_m181

description:
experiment5
counts_LPS_LPA_full.txt


title: LU_m184

description:
experiment5
counts_LPS_LPA_full.txt


title: LI_m215

description:
experiment5
counts_LPS_LPA_full.txt


title: LI_m183

description:
experiment5
counts_LPS_LPA_full.txt


title: LI_m182

description:
experiment5
counts_LPS_LPA_full.txt


title: KI_m214

description:
experiment5
counts_LPS_LPA_full.txt


title: KI_m184

description:
experiment5
counts_LPS_LPA_full.txt


title: KI_m183

description:
experiment5
counts_LPS_LPA_full.txt


title: KI_m213

description:
experiment5
counts_LPS_LPA_full.txt


title: KI_m182

description:
experiment5
counts_LPS_LPA_full.txt


title: KI_m181

description:
experiment5
counts_LPS_LPA_full.txt


title: KI_m215

description:
experiment5
counts_LPS_LPA_full.txt


title: HE_m216

description:
experiment4
counts_Cytokine_combo2.txt


title: HE_m213

description:
experiment4
counts_Cytokine_combo2.txt


title: HE_m215

description:
experiment4
counts_Cytokine_combo2.txt


title: HE_m214

description:
experiment4
counts_Cytokine_combo2.txt


title: HE_m184

description:
experiment4
counts_Cytokine_combo2.txt


title: HE_m183

description:
experiment4
counts_Cytokine_combo2.txt


title: LI_m213

description:
experiment5
counts_LPS_LPA_full.txt


title: CO_m216

description:
experiment4
counts_Cytokine_combo2.txt


title: HE_m182

description:
experiment4
counts_Cytokine_combo2.txt


title: HE_m181

description:
experiment4
counts_Cytokine_combo2.txt


title: CO_m183

description:
experiment4
counts_Cytokine_combo2.txt


title: CO_m214

description:
experiment4
counts_Cytokine_combo2.txt


title: CO_m184

description:
experiment4
counts_Cytokine_combo2.txt


title: CO_m213

description:
experiment4
counts_Cytokine_combo2.txt


title: CO_m181

description:
experiment4
counts_Cytokine_combo2.txt


title: BM_m215

description:
experiment4
counts_Cytokine_combo2.txt


title: BM_m214

description:
experiment4
counts_Cytokine_combo2.txt


title: LI_m181

description:
experiment5
counts_LPS_LPA_full.txt


title: BM_m183

description:
experiment4
counts_Cytokine_combo2.txt


title: TH_m144

description:
experiment4
counts_Cytokine_combo2.txt


title: TH_m143

description:
experiment4
counts_Cytokine_combo2.txt


title: BM_m181

description:
experiment4
counts_Cytokine_combo2.txt


title: TH_m142

description:
experiment4
counts_Cytokine_combo2.txt


title: TH_m141

description:
experiment4
counts_Cytokine_combo2.txt


title: TH_m138

description:
experiment4
counts_Cytokine_combo2.txt


title: TH_m137

description:
experiment4
counts_Cytokine_combo2.txt


title: TH_m140

description:
experiment4
counts_Cytokine_combo2.txt


title: TH_m139

description:
experiment4
counts_Cytokine_combo2.txt


title: CO_m215

description:
experiment4
counts_Cytokine_combo2.txt


title: CO_m182

description:
experiment4
counts_Cytokine_combo2.txt


title: SP_m141

description:
experiment4
counts_Cytokine_combo2.txt


title: SP_m143

description:
experiment4
counts_Cytokine_combo2.txt


title: SP_m140

description:
experiment4
counts_Cytokine_combo2.txt


title: SP_m142

description:
experiment4
counts_Cytokine_combo2.txt


title: SP_m144

description:
experiment4
counts_Cytokine_combo2.txt


title: SP_m137

description:
experiment4
counts_Cytokine_combo2.txt


title: LU_m141

description:
experiment4
counts_Cytokine_combo2.txt


title: BM_m184

description:
experiment4
counts_Cytokine_combo2.txt


title: LU_m139

description:
experiment4
counts_Cytokine_combo2.txt


title: BM_m213

description:
experiment4
counts_Cytokine_combo2.txt


title: LU_m142

description:
experiment4
counts_Cytokine_combo2.txt


title: LU_m140

description:
experiment4
counts_Cytokine_combo2.txt


title: BM_m216

description:
experiment4
counts_Cytokine_combo2.txt


title: LU_m143

description:
experiment4
counts_Cytokine_combo2.txt


title: LU_m144

description:
experiment4
counts_Cytokine_combo2.txt


title: BM_m182

description:
experiment4
counts_Cytokine_combo2.txt


title: LU_m138

description:
experiment4
counts_Cytokine_combo2.txt


title: LI_m143

description:
experiment4
counts_Cytokine_combo2.txt


title: LI_m142

description:
experiment4
counts_Cytokine_combo2.txt


title: LI_m141

description:
experiment4
counts_Cytokine_combo2.txt


title: LU_m137

description:
experiment4
counts_Cytokine_combo2.txt


title: LI_m140

description:
experiment4
counts_Cytokine_combo2.txt


title: LI_m139

description:
experiment4
counts_Cytokine_combo2.txt


title: SP_m138

description:
experiment4
counts_Cytokine_combo2.txt


title: LI_m144

description:
experiment4
counts_Cytokine_combo2.txt


title: LI_m138

description:
experiment4
counts_Cytokine_combo2.txt


title: KI_m143

description:
experiment4
counts_Cytokine_combo2.txt


title: KI_m142

description:
experiment4
counts_Cytokine_combo2.txt


title: KI_m139

description:
experiment4
counts_Cytokine_combo2.txt


title: KI_m138

description:
experiment4
counts_Cytokine_combo2.txt


title: KI_m144

description:
experiment4
counts_Cytokine_combo2.txt


title: iLN_m144

description:
experiment4
counts_Cytokine_combo2.txt


title: iLN_m141

description:
experiment4
counts_Cytokine_combo2.txt


title: iLN_m137

description:
experiment4
counts_Cytokine_combo2.txt


title: iLN_m139

description:
experiment4
counts_Cytokine_combo2.txt


title: iLN_m140

description:
experiment4
counts_Cytokine_combo2.txt


title: KI_m141

description:
experiment4
counts_Cytokine_combo2.txt


title: HE_m143

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m142

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m144

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m137

description:
experiment4
counts_Cytokine_combo2.txt


title: iLN_m138

description:
experiment4
counts_Cytokine_combo2.txt


title: iLN_m143

description:
experiment4
counts_Cytokine_combo2.txt


title: LI_m137

description:
experiment4
counts_Cytokine_combo2.txt


title: iLN_m142

description:
experiment4
counts_Cytokine_combo2.txt


title: HE_m141

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m139

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m140

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m137

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m144

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m143

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m141

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m140

description:
experiment4
counts_Cytokine_combo2.txt


title: CO_m142

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m138

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m140

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m137

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m144

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m139

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m143

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m140

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m141

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m139

description:
experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
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experiment3
counts_Cytokine_combo.txt


title: LI_m87

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m89

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m90

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m109

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m106

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m85

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m88

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m82

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m83

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m80

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m78

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m84

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m77

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m79

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m94

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m75

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m81

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m76

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m73

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m70

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m72

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m71

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m68

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m74

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m65

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m86

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m62

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m64

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m63

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m67

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m66

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m61

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m60

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m57

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m56

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m55

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m54

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m135

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m53

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m136

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m131

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m133

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m130

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m69

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m126

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m129

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m134

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m127

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m128

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m125

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m122

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m124

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m120

description:
experiment3
counts_Cytokine_combo.txt


title: LU_m79

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m121

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m118

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m119

description:
experiment3
counts_Cytokine_combo.txt


title: LI_m59

description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


title: KI_m117

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m116

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m115

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m113

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m112

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m111

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m108

description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


title: KI_m109

description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


title: KI_m105

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m103

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m123

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m106

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m107

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m100

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m101

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m99

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m98

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m102

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m94

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m97

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m93

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m96

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m95

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m92

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m91

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m90

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m110

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m85

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m86

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m87

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m84

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m89

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m88

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m80

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m79

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m76

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m81

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m82

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m72

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m70

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m75

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m73

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m78

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m69

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m68

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m65

description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


title: KI_m71

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m63

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m67

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m66

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m64

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m83

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m62

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m59

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m61

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m60

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m58

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m57

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m56

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m55

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m77

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m134

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m53

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m136

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m126

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m129

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m127

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m135

description:
experiment3
counts_Cytokine_combo.txt


title: KI_m54

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m130

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m124

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m132

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m123

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m125

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m128

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m120

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m121

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m118

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m117

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m116

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m115

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m133

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m113

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m112

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m114

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m110

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m111

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m109

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m107

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m106

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m103

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m108

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m104

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m101

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m105

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m122

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m100

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m98

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m95

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m99

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m94

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m119

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m92

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m96

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m102

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m93

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m90

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m89

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m88

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m87

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m86

description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m84

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m83

description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m77

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m80

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m81

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m79

description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m70

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m73

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m91

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m67

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m75

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m69

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m72

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m63

description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m68

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m64

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m62

description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m61

description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m59

description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


title: iLN_m56

description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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experiment3
counts_Cytokine_combo.txt


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description:
experiment3
counts_Cytokine_combo.txt


title: HE_m71

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m74

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m89

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m72

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m70

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m69

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m82

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m79

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m81

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m76

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m77

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m83

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m80

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m68

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m65

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m73

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m64

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m63

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m78

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m67

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m62

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m61

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m86

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m60

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m66

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m59

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m56

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m55

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m127

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m134

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m53

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m135

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m132

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m136

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m124

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m133

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m130

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m122

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m129

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m123

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m120

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m121

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m126

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m125

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m54

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m117

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m128

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m116

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m119

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m118

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m114

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m58

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m115

description:
experiment3
counts_Cytokine_combo.txt


title: HE_m57

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m113

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m110

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m111

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m109

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m107

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m102

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m106

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m105

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m101

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m98

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m108

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m93

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m91

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m90

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m87

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m100

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m85

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m89

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m95

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m97

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m92

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m94

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m84

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m112

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m86

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m83

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m82

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m81

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m99

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m103

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m104

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m96

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m79

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m78

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m80

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m88

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m70

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m77

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m75

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m67

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m74

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m57

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m61

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m69

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m62

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m63

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m76

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m71

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m64

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m59

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m68

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m60

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m66

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m65

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m58

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m56

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m55

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m53

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m54

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m136

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m135

description:
experiment3
counts_Cytokine_combo.txt


title: CO_m73

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m133

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m134

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m132

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m130

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m118

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m116

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m119

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m115

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m120

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m124

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m114

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m113

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m125

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m123

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m121

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m108

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m111

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m128

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m122

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m106

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m112

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m104

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m105

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m107

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m103

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m129

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m102

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m101

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m109

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m110

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m100

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m126

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m117

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m127

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m93

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m99

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m94

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m95

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m98

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m91

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m92

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m83

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m90

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m86

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m84

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m96

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m89

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m85

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m81

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m87

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m80

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m76

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m88

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m78

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m75

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m74

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m82

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m73

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m77

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m72

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m97

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m71

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m70

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m68

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m69

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m67

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m79

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m64

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m66

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m62

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m63

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m56

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m65

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m57

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m59

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m60

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m58

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m54

description:
experiment3
counts_Cytokine_combo.txt


title: TH_m41

description:
experiment2
counts_CLP.txt


title: TH_m40

description:
experiment2
counts_CLP.txt


title: TH_m42

description:
experiment2
counts_CLP.txt


title: TH_m37

description:
experiment2
counts_CLP.txt


title: TH_m39

description:
experiment2
counts_CLP.txt


title: BM_m55

description:
experiment3
counts_Cytokine_combo.txt


title: BM_m53

description:
experiment3
counts_Cytokine_combo.txt


title: TH_m35

description:
experiment2
counts_CLP.txt


title: SP_m42

description:
experiment2
counts_CLP.txt


title: SP_m41

description:
experiment2
counts_CLP.txt


title: TH_m33

description:
experiment2
counts_CLP.txt


title: BM_m61

description:
experiment3
counts_Cytokine_combo.txt


title: TH_m36

description:
experiment2
counts_CLP.txt


title: SP_m37

description:
experiment2
counts_CLP.txt


title: SP_m38

description:
experiment2
counts_CLP.txt


title: TH_m34

description:
experiment2
counts_CLP.txt


title: SP_m39

description:
experiment2
counts_CLP.txt


title: SP_m36

description:
experiment2
counts_CLP.txt


title: TH_m38

description:
experiment2
counts_CLP.txt


title: SP_m35

description:
experiment2
counts_CLP.txt


title: SP_m34

description:
experiment2
counts_CLP.txt


title: SP_m33

description:
experiment2
counts_CLP.txt


title: LU_m40

description:
experiment2
counts_CLP.txt


title: LU_m42

description:
experiment2
counts_CLP.txt


title: LU_m36

description:
experiment2
counts_CLP.txt


title: LU_m35

description:
experiment2
counts_CLP.txt


title: LU_m38

description:
experiment2
counts_CLP.txt


title: LU_m39

description:
experiment2
counts_CLP.txt


title: LI_m40

description:
experiment2
counts_CLP.txt


title: LU_m37

description:
experiment2
counts_CLP.txt


title: LU_m41

description:
experiment2
counts_CLP.txt


title: LI_m41

description:
experiment2
counts_CLP.txt


title: LU_m33

description:
experiment2
counts_CLP.txt


title: LI_m39

description:
experiment2
counts_CLP.txt


title: LI_m38

description:
experiment2
counts_CLP.txt


title: LI_m42

description:
experiment2
counts_CLP.txt


title: LI_m36

description:
experiment2
counts_CLP.txt


title: LI_m37

description:
experiment2
counts_CLP.txt


title: LI_m35

description:
experiment2
counts_CLP.txt


title: SP_m40

description:
experiment2
counts_CLP.txt


title: LI_m33

description:
experiment2
counts_CLP.txt


title: LI_m34

description:
experiment2
counts_CLP.txt


title: KI_m42

description:
experiment2
counts_CLP.txt


title: ventral FeBO mat 4

city: Utrecht

first: Delilah

last: Hendriks

address: Uppsalalaan 8

country: Netherlands

institute: Hubrecht Institute

data_processing:
Quality control on the sequence reads from the raw FASTQ files was done with FastQC.
TrimGalore was used to trim reads based on quality and adapter presence after which FastQC was again used to check the resulting quality.
rRNA reads were filtered out using SortMeRNA after which the resulting reads were aligned to the reference genome fasta (genome.fa) using the STAR aligner.
Followup QC on the mapped (bam) files was done using Sambamba, RSeQC and PreSeq.
Read counts were then generated using the Subread FeatureCounts module with the Homo_sapiens.GRCh37.74.gtf file as annotation
Assembly: Genome Reference Consortium Human Build 37
Supplementary files format and content: CSV files containing DESeq2 normalized transcript counts

molecule: total RNA

organism: Homo sapiens

source_name: human fetal ventral forebrain organoids

extract_protocol:
total RNA was isolated using TRIzol Reagent (Thermo Fisher)
RNA libraries were prepared using TruSeq Stranded mRNA polyA kit (Illumina)

value: human fetal ventral forebrain organoids

value: wild type

value: maturation


title: KI_m41

description:
experiment2
counts_CLP.txt


title: ventral FeBO mat 3


title: ventral FeBO mat 2


title: KI_m40

description:
experiment2
counts_CLP.txt


title: ventral FeBO mat 1


title: ventral FeBO exp 11

value: expansion


title: ventral FeBO exp 10


title: KI_m38

description:
experiment2
counts_CLP.txt


title: ventral FeBO exp 12


title: ventral FeBO exp 9


title: KI_m37

description:
experiment2
counts_CLP.txt


title: LU_m34

description:
experiment2
counts_CLP.txt


title: KI_m34

description:
experiment2
counts_CLP.txt


title: ventral FeBO exp 8


title: KI_m35

description:
experiment2
counts_CLP.txt


title: ventral FeBO exp 7


title: ventral FeBO exp 6


title: ventral FeBO exp 5


title: ventral FeBO exp 4


title: iLN_m41

description:
experiment2
counts_CLP.txt


title: ventral FeBO exp 3


title: iLN_m40

description:
experiment2
counts_CLP.txt


title: iLN_m39

description:
experiment2
counts_CLP.txt


title: ventral FeBO exp 1


title: ventral FeBO exp 2


title: KI_m39

description:
experiment2
counts_CLP.txt


title: iLN_m38

description:
experiment2
counts_CLP.txt


title: iLN_m36

description:
experiment2
counts_CLP.txt


title: dorsal FeBO mat 5

source_name: human fetal dorsal forebrain organoids

value: human fetal dorsal forebrain organoids


title: dorsal FeBO mat 4


title: iLN_m37

description:
experiment2
counts_CLP.txt


title: dorsal FeBO mat 3


title: KI_m33

description:
experiment2
counts_CLP.txt


title: HE_m42

description:
experiment2
counts_CLP.txt


title: KI_m36

description:
experiment2
counts_CLP.txt


title: dorsal FeBO mat 1


title: iLN_m34

description:
experiment2
counts_CLP.txt


title: dorsal FeBO mat 2


title: iLN_m42

description:
experiment2
counts_CLP.txt


title: dorsal FeBO mat 6


title: HE_m41

description:
experiment2
counts_CLP.txt


title: dorsal FeBO exp 12


title: HE_m39

description:
experiment2
counts_CLP.txt


title: HE_m40

description:
experiment2
counts_CLP.txt


title: dorsal FeBO exp 11


title: dorsal FeBO exp 10


title: HE_m38

description:
experiment2
counts_CLP.txt


title: HE_m37

description:
experiment2
counts_CLP.txt


title: dorsal FeBO exp 9


title: dorsal FeBO exp 8


title: iLN_m35

description:
experiment2
counts_CLP.txt


title: HE_m36

description:
experiment2
counts_CLP.txt


title: HE_m35

description:
experiment2
counts_CLP.txt


title: dorsal FeBO exp 7


title: HE_m34

description:
experiment2
counts_CLP.txt


title: HE_m33

description:
experiment2
counts_CLP.txt


title: dorsal FeBO exp 13


title: CO_m42

description:
experiment2
counts_CLP.txt


title: iLN_m33

description:
experiment2
counts_CLP.txt


title: dorsal FeBO exp 2


title: dorsal FeBO exp 3


title: dorsal FeBO exp 1


title: PSC-cortical spheroid BMP Wnt 2

source_name: human H1 PSC-cortical spheroids

value: human H1 PSC-cortical spheroids

value: BMP4+CHIR (BMP+Wnt)


title: CO_m41

description:
experiment2
counts_CLP.txt

value: Wild type


title: CO_m39

description:
experiment2
counts_CLP.txt


title: CO_m37

description:
experiment2
counts_CLP.txt


title: CO_m40

description:
experiment2
counts_CLP.txt


title: CO_m38

description:
experiment2
counts_CLP.txt


title: PSC-cortical spheroid control 2

value: control


title: CO_m36

description:
experiment2
counts_CLP.txt


title: CO_m35

description:
experiment2
counts_CLP.txt


title: PSC-cortical spheroid control 1


title: PSC-unguided brain organoid BMP Wnt 2

source_name: human H1 PSC-unguided brain organoids

value: human H1 PSC-unguided brain organoids


title: CO_m34

description:
experiment2
counts_CLP.txt


title: CO_m33

description:
experiment2
counts_CLP.txt


title: PSC-unguided brain organoid BMP Wnt 1


title: dorsal FeBO exp 6


title: PSC-unguided brain organoid control 2


title: dorsal FeBO exp 5


title: BM_m42

description:
experiment2
counts_CLP.txt


title: BM_m41

description:
experiment2
counts_CLP.txt


title: PSC-unguided brain organoid control 1


title: dorsal FeBO exp 4


title: ventral FeBO BMP Wnt 2


title: ventral FeBO BMP Wnt 1


title: BM_m39

description:
experiment2
counts_CLP.txt


title: ventral FeBO control 2


title: PSC-cortical spheroid BMP Wnt 1


title: dorsal FeBO BMP Wnt 2


title: dorsal FeBO BMP Wnt 3


title: BM_m38

description:
experiment2
counts_CLP.txt


title: BM_m35

description:
experiment2
counts_CLP.txt


title: ventral FeBO control 1


title: dorsal FeBO control 3


title: BM_m36

description:
experiment2
counts_CLP.txt


title: BM_m37

description:
experiment2
counts_CLP.txt


title: dorsal FeBO control 2


title: BM_m33

description:
experiment2
counts_CLP.txt


title: dorsal FeBO control 1


title: dorsal FeBO BMP Wnt 1


title: BM_m34

description:
experiment2
counts_CLP.txt


title: TH_m27

description:
experiment1
counts_LPS_timecourse.txt

value: Thymus


title: TH_m28

description:
experiment1
counts_LPS_timecourse.txt


title: TH_m26

description:
experiment1
counts_LPS_timecourse.txt


title: TH_m369

data_processing:
We used the RNA-seq pipeline in the bcbio-nextgen project version 1.1.5 (https://bcbio-nextgen.readthedocs.io/en/latest/).
Reads were aligned to the mouse mm10 transcriptomes with RapMap.
Transcripts were counted with fasttagcount in umis (https://github.com/vals/umis).
Quality control metrics were compiled with a combination of FastQC (http:bioinformatics.babraham.ac.uk/projects/fastqc/) and MultiQC (https://github.com/ewels/MultiQC).
Assembly: mm10
Supplementary files format and content: 1_counts_LPS_timecourse.txt: counts matrix from experiment1
Supplementary files format and content: 2_counts_CLP_timecourse.txt: counts matrix from experiment2
Supplementary files format and content: 3_counts_Cytokine_combo.txt: counts matrix from experiment3
Supplementary files format and content: 4_counts_Cytokine_combo2.txt: counts matrix from experiment4
Supplementary files format and content: 5_counts_LPS_LPA.txt: counts matrix from experiment5
Supplementary files format and content: 6_counts_LPS_antiPla2g5: counts matrix from experiment6
Supplementary files format and content: 7_counts_LPS_Plasma.txt: counts matrix from experiment7
Supplementary files format and content: 8_counts_LPS_DEX.txt: counts matrix from experiment8
Supplementary files format and content: 9_counts_LPS_KO.txt: counts matrix from experiment9
Supplementary files format and content: 10_counts_LPS_KO2.txt: counts matrix from experiment10
Supplementary files format and content: 11_counts_CLP_timecourse2.txt: counts matrix from experiment11
Supplementary files format and content: 12_counts_CLP_CytoBlock.txt: counts matrix from experiment12
Supplementary files format and content: 13_counts_CLP_CytoBlock2.txt: counts matrix from experiment13
Supplementary files format and content: 14_counts_CLP_antiTNF.txt: counts matrix from experiment14


title: TH_m25

description:
experiment1
counts_LPS_timecourse.txt


title: BM_m40

description:
experiment2
counts_CLP.txt


title: TH_m367


title: TH_m23

description:
experiment1
counts_LPS_timecourse.txt


title: TH_m24

description:
experiment1
counts_LPS_timecourse.txt


title: TH_m22

description:
experiment1
counts_LPS_timecourse.txt


title: TH_m366


title: TH_m368


title: TH_m365


title: TH_m20

description:
experiment1
counts_LPS_timecourse.txt


title: TH_m363


title: TH_m19

description:
experiment1
counts_LPS_timecourse.txt


title: TH_m364


title: TH_m361


title: TH_m17

description:
experiment1
counts_LPS_timecourse.txt


title: TH_m16

description:
experiment1
counts_LPS_timecourse.txt


title: TH_m362


title: TH_m360


title: TH_m15

description:
experiment1
counts_LPS_timecourse.txt


title: TH_m358

value: TNF KO


title: TH_m357


title: TH_m13

description:
experiment1
counts_LPS_timecourse.txt


title: TH_m356


title: TH_m14

description:
experiment1
counts_LPS_timecourse.txt


title: TH_m12

description:
experiment1
counts_LPS_timecourse.txt


title: TH_m11

description:
experiment1
counts_LPS_timecourse.txt


title: SP_m369

value: Spleen


title: TH_m10

description:
experiment1
counts_LPS_timecourse.txt


title: SP_m368


title: SP_m367


title: TH_m9

description:
experiment1
counts_LPS_timecourse.txt


title: TH_m8

description:
experiment1
counts_LPS_timecourse.txt


title: SP_m366


title: TH_m21

description:
experiment1
counts_LPS_timecourse.txt


title: SP_m365


title: TH_m7

description:
experiment1
counts_LPS_timecourse.txt


title: TH_m18

description:
experiment1
counts_LPS_timecourse.txt


title: SP_m364


title: TH_m6

description:
experiment1
counts_LPS_timecourse.txt


title: SP_m363


title: SP_m362


title: TH_m359


title: SP_m360


title: TH_m3

description:
experiment1
counts_LPS_timecourse.txt


title: SP_m359


title: SP_m28

description:
experiment1
counts_LPS_timecourse.txt


title: SP_m357


title: SP_m358


title: SP_m27

description:
experiment1
counts_LPS_timecourse.txt


title: SP_m356


title: LU_m369

value: Lung


title: SP_m25

description:
experiment1
counts_LPS_timecourse.txt


title: LU_m367


title: SP_m24

description:
experiment1
counts_LPS_timecourse.txt


title: SP_m22

description:
experiment1
counts_LPS_timecourse.txt


title: SP_m26

description:
experiment1
counts_LPS_timecourse.txt


title: SP_m23

description:
experiment1
counts_LPS_timecourse.txt


title: LU_m368


title: TH_m5

description:
experiment1
counts_LPS_timecourse.txt